BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780496|ref|YP_003064909.1| integration host factor
subunit alpha [Candidatus Liberibacter asiaticus str. psy62]
         (114 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780496|ref|YP_003064909.1| integration host factor subunit alpha [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040173|gb|ACT56969.1| integration host factor subunit alpha [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 114

 Score =  229 bits (585), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG
Sbjct: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY 114
           SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY
Sbjct: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY 114


>gi|315122317|ref|YP_004062806.1| integration host factor subunit alpha [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495719|gb|ADR52318.1| integration host factor subunit alpha [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 110

 Score =  163 bits (413), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 81/107 (75%), Positives = 93/107 (86%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           M+KTITRSDL KSISK FGLSRKDST FVTT+FNEICDSA RGEAIKISSFATF V++KG
Sbjct: 1   MNKTITRSDLAKSISKNFGLSRKDSTFFVTTVFNEICDSAARGEAIKISSFATFRVRKKG 60

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
            RVGRNLQTNQEV I  RRV+VFKAS +LKKRIMD++   +C ++D+
Sbjct: 61  PRVGRNLQTNQEVMIGSRRVMVFKASDVLKKRIMDELDNLECKEEDL 107


>gi|110633500|ref|YP_673708.1| integration host factor subunit alpha [Mesorhizobium sp. BNC1]
 gi|123058057|sp|Q11J82|IHFA_MESSB RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|110284484|gb|ABG62543.1| integration host factor, alpha subunit [Chelativorans sp. BNC1]
          Length = 111

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/107 (49%), Positives = 78/107 (72%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +++ ++ GLSR +S + V  +  E+CD+ VRGE +K+SSFATF V++K  R
Sbjct: 4   KTVTRADLAEAVYRKVGLSRTESAQIVEMVLQEVCDAIVRGETVKLSSFATFQVREKNER 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
           VGRN +T +EV I PRRV+ FKAS++LK RI+   + RK +K+   S
Sbjct: 64  VGRNPKTGEEVPISPRRVMTFKASNVLKSRILRAHQTRKPSKEATAS 110


>gi|49475535|ref|YP_033576.1| integration host factor subunit alpha [Bartonella henselae str.
           Houston-1]
 gi|81647942|sp|Q6G3K3|IHFA_BARHE RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|49238341|emb|CAF27565.1| Integration host factor alpha-subunit [Bartonella henselae str.
           Houston-1]
          Length = 108

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 73/100 (73%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           SKT+TR+DL   + ++ GLS  +S   V  + NEIC+S VRGEA+K+SSFATF V++K  
Sbjct: 3   SKTVTRADLASVVCRKVGLSHTESAALVELVLNEICNSLVRGEAVKLSSFATFQVRKKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           RVGRN +T  E  I PRRVV FKA+++LK+RI+D  R R+
Sbjct: 63  RVGRNPKTGVEAPILPRRVVTFKAANVLKQRILDSHRARQ 102


>gi|240850682|ref|YP_002972082.1| integration host factor subunit alpha [Bartonella grahamii as4aup]
 gi|240267805|gb|ACS51393.1| integration host factor subunit alpha [Bartonella grahamii as4aup]
          Length = 104

 Score =  114 bits (286), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 71/100 (71%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           SKT+TR+DL   + K  GLS  +S   V  + +EIC+S VRGEA+K+SSFATF V+ K  
Sbjct: 3   SKTVTRADLASVVCKRVGLSHTESAALVELVLDEICNSLVRGEAVKLSSFATFQVRSKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           RVGRN +T  E  I PRRVV FKA+++LK+RI+D  R R+
Sbjct: 63  RVGRNPKTGVEAPIPPRRVVTFKAANVLKQRILDSHRARQ 102


>gi|49474169|ref|YP_032211.1| integration host factor subunit alpha [Bartonella quintana str.
           Toulouse]
 gi|81647096|sp|Q6FZZ9|IHFA_BARQU RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|49239673|emb|CAF26044.1| Integration host factor alpha-subunit [Bartonella quintana str.
           Toulouse]
          Length = 104

 Score =  114 bits (285), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/100 (52%), Positives = 72/100 (72%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           SKT+TR+DL   + ++ GLS  +S   V  + NEIC+S VRGEA+K+SSFATF V+ K  
Sbjct: 3   SKTVTRADLASVVCRKVGLSHTESAALVELVLNEICNSLVRGEAVKLSSFATFQVRNKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           R+GRN +T  E  I PRRVV FKA+++LK+RI++  R R+
Sbjct: 63  RIGRNPKTGVEAPISPRRVVTFKAANVLKQRILNSHRARQ 102


>gi|15964977|ref|NP_385330.1| integration host factor subunit alpha [Sinorhizobium meliloti 1021]
 gi|150396054|ref|YP_001326521.1| integration host factor subunit alpha [Sinorhizobium medicae
           WSM419]
 gi|307301048|ref|ZP_07580817.1| integration host factor, alpha subunit [Sinorhizobium meliloti
           BL225C]
 gi|307317782|ref|ZP_07597220.1| integration host factor, alpha subunit [Sinorhizobium meliloti
           AK83]
 gi|21362610|sp|Q92QT3|IHFA_RHIME RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|166918530|sp|A6U7Q6|IHFA_SINMW RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|15074156|emb|CAC45803.1| Probable integration host factor alpha-subunit [Sinorhizobium
           meliloti 1021]
 gi|150027569|gb|ABR59686.1| integration host factor, alpha subunit [Sinorhizobium medicae
           WSM419]
 gi|306896544|gb|EFN27292.1| integration host factor, alpha subunit [Sinorhizobium meliloti
           AK83]
 gi|306904003|gb|EFN34589.1| integration host factor, alpha subunit [Sinorhizobium meliloti
           BL225C]
          Length = 112

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 54/110 (49%), Positives = 82/110 (74%), Gaps = 1/110 (0%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +S+ ++ GLSR +S   V T+ +EIC++ VRGE++K+SSFATF V+ K  R
Sbjct: 4   KTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGESVKLSSFATFQVRDKNER 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSG 112
           +GRN +T +EV I PRRV+ FKAS++LK+R++     RK +K   ++P+G
Sbjct: 64  IGRNPKTGEEVPISPRRVMTFKASNVLKQRVLKAHLSRK-SKLKPSNPAG 112


>gi|163868458|ref|YP_001609667.1| integration host factor subunit alpha [Bartonella tribocorum CIP
           105476]
 gi|189044693|sp|A9IVB2|IHFA_BART1 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|161018114|emb|CAK01672.1| integration host factor alpha subunit [Bartonella tribocorum CIP
           105476]
          Length = 107

 Score =  113 bits (283), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 53/100 (53%), Positives = 72/100 (72%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           SKT+TR+DL   + K+ GLS  +S   V  + +EIC+S VRGEA+K+SSFATF V+ K  
Sbjct: 3   SKTVTRADLASVVCKKVGLSHTESAALVELVLDEICNSLVRGEAVKLSSFATFQVRSKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           R+GRN +T  E  I PRRVV FKA++ILK+RI+D  R ++
Sbjct: 63  RIGRNPKTGVEAPIPPRRVVTFKAANILKQRILDSHRAKQ 102


>gi|319898983|ref|YP_004159076.1| integration host factor alpha subunit [Bartonella clarridgeiae 73]
 gi|319402947|emb|CBI76498.1| integration host factor alpha subunit [Bartonella clarridgeiae 73]
          Length = 103

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/100 (52%), Positives = 72/100 (72%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           SKT+TR+DL  ++ ++ GLS  +S   V  + NEIC+S V+GE +K+SSFATF V+ K  
Sbjct: 3   SKTVTRADLAGAVCRKVGLSHTESADLVELVLNEICNSLVKGEMVKLSSFATFQVRNKSE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           R+GRN +T  E  I PRRVV FKA+++LKKRI+D  R +K
Sbjct: 63  RIGRNPKTGVEASIPPRRVVTFKAANVLKKRILDTHRAKK 102


>gi|159184652|ref|NP_354199.2| integration host factor subunit alpha [Agrobacterium tumefaciens
           str. C58]
 gi|23821752|sp|Q8UG61|IHFA_AGRT5 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|159139950|gb|AAK86984.2| integration host factor alpha subunit [Agrobacterium tumefaciens
           str. C58]
          Length = 112

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 75/102 (73%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +S+ ++ GLSR +S   V T+ +EIC++  RGE +K+SSFATF +++K  R
Sbjct: 4   KTVTRADLAESVFRKVGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREKNER 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           +GRN +T +EV I PRRV+ FKAS++LK+RI+     RK  +
Sbjct: 64  IGRNPKTGEEVPISPRRVMTFKASNVLKQRILKAHTARKAKQ 105


>gi|222148217|ref|YP_002549174.1| integration host factor subunit alpha [Agrobacterium vitis S4]
 gi|254803508|sp|B9JV88|IHFA_AGRVS RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|221735205|gb|ACM36168.1| integration host factor alpha subunit [Agrobacterium vitis S4]
          Length = 112

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/110 (48%), Positives = 78/110 (70%), Gaps = 1/110 (0%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +S+ ++ GLSR +S   V T+ +EIC++ VRGE +K+SSFATF V+ K  R
Sbjct: 4   KTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGEMVKLSSFATFQVRAKNER 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSG 112
           +GRN +T +EV I PR+V+ FKAS++LK+RI+     RK  K    +P+ 
Sbjct: 64  IGRNPKTGEEVPISPRKVMTFKASNVLKQRILRSHLARKA-KQKPANPAA 112


>gi|222085523|ref|YP_002544053.1| integration host factor, alpha subunit [Agrobacterium radiobacter
           K84]
 gi|254803507|sp|B9JCZ0|IHFA_AGRRK RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|221722971|gb|ACM26127.1| integration host factor, alpha subunit [Agrobacterium radiobacter
           K84]
          Length = 112

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/100 (52%), Positives = 73/100 (73%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +S+ ++ GLSR +S   V T+ +EIC++ VRGE +K+SSFATF V+ K  R
Sbjct: 4   KTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNER 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           +GRN +T +EV I PRRV+ FKAS++LK RI+     RK 
Sbjct: 64  IGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHASRKA 103


>gi|325292554|ref|YP_004278418.1| integration host factor subunit alpha [Agrobacterium sp. H13-3]
 gi|325060407|gb|ADY64098.1| integration host factor subunit alpha [Agrobacterium sp. H13-3]
          Length = 112

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 74/99 (74%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +S+ ++ GLSR +S   V T+ +EIC++  RGE +K+SSFATF +++K  R
Sbjct: 4   KTVTRADLAESVFRKVGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREKNER 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           +GRN +T +EV I PRRV+ FKAS++LK+RI+     RK
Sbjct: 64  IGRNPKTGEEVPISPRRVMTFKASNVLKQRILKAHTARK 102


>gi|116251406|ref|YP_767244.1| integration host factor subunit alpha [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|123081976|sp|Q1MIS5|IHFA_RHIL3 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|115256054|emb|CAK07135.1| putative integration host factor alpha-subunit [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 112

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 73/99 (73%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +S+ ++ GLSR +S   V T+ +EIC++ VRGE +K+SSFATF V+ K  R
Sbjct: 4   KTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNER 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           +GRN +T +EV I PRRV+ FKAS++LK RI+     RK
Sbjct: 64  IGRNPKTGEEVPISPRRVMTFKASNVLKTRILKSHVARK 102


>gi|241204022|ref|YP_002975118.1| integration host factor subunit alpha [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857912|gb|ACS55579.1| integration host factor, alpha subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 112

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 73/99 (73%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +S+ ++ GLSR +S   V T+ +EIC++ VRGE +K+SSFATF V+ K  R
Sbjct: 4   KTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNER 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           +GRN +T +EV I PRRV+ FKAS++LK RI+     RK
Sbjct: 64  IGRNPKTGEEVPISPRRVMTFKASNVLKTRILKSHVARK 102


>gi|319404309|emb|CBI77902.1| integration host factor alpha subunit [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 103

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/100 (53%), Positives = 72/100 (72%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           SKT+TR+DL  ++ ++ GLS  +S   V  + +EIC+S VRGE +K+SSFATF V+ K  
Sbjct: 3   SKTVTRADLAGAVCRKVGLSHTESADLVELVLDEICNSLVRGEMVKLSSFATFQVRDKSE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           RVGRN +T  E  I PRRVV FKA+++LKKRI+D  R +K
Sbjct: 63  RVGRNPKTGVEASIPPRRVVTFKAANVLKKRILDTHRAKK 102


>gi|227821546|ref|YP_002825516.1| integration host factor subunit alpha [Sinorhizobium fredii NGR234]
 gi|254803519|sp|C3M9J7|IHFA_RHISN RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|227340545|gb|ACP24763.1| integration host factor, alpha subunit [Sinorhizobium fredii
           NGR234]
          Length = 112

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/109 (46%), Positives = 78/109 (71%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +S+ ++ GLSR +S   V T+ +EIC++ VRGE++K+SSFATF V+ K  R
Sbjct: 4   KTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGESVKLSSFATFQVRDKNER 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111
           +GRN +T +EV I PRRV+ FKAS++LK+R++     R+  +    + S
Sbjct: 64  IGRNPKTGEEVPISPRRVMTFKASNVLKQRVLKAHLSRRAKQKQTGTAS 112


>gi|327189794|gb|EGE56935.1| integration host factor protein, alpha subunit [Rhizobium etli
           CNPAF512]
          Length = 117

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/100 (52%), Positives = 73/100 (73%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +S+ ++ GLSR +S   V T+ +EIC++ VRGE +K+SSFATF V+ K  R
Sbjct: 9   KTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNER 68

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           +GRN +T +EV I PRRV+ FKAS++LK RI+     RK 
Sbjct: 69  IGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVSRKV 108


>gi|190891218|ref|YP_001977760.1| integration host factor protein, alpha subunit [Rhizobium etli CIAT
           652]
 gi|218515089|ref|ZP_03511929.1| integration host factor subunit alpha [Rhizobium etli 8C-3]
 gi|226709742|sp|B3PVE1|IHFA_RHIE6 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|190696497|gb|ACE90582.1| integration host factor protein, alpha subunit [Rhizobium etli CIAT
           652]
          Length = 112

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 73/99 (73%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +S+ ++ GLSR +S   V T+ +EIC++ VRGE +K+SSFATF V+ K  R
Sbjct: 4   KTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNER 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           +GRN +T +EV I PRRV+ FKAS++LK RI+     RK
Sbjct: 64  IGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVSRK 102


>gi|319407314|emb|CBI80955.1| integration host factor alpha subunit [Bartonella sp. 1-1C]
          Length = 103

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/100 (52%), Positives = 72/100 (72%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           SKT+TR+DL  ++ ++ GLS  +S   V  + +EIC+S VRGE +K+SSFATF V+ K  
Sbjct: 3   SKTVTRADLAGAVCRKVGLSHTESADLVELVLDEICNSLVRGEMVKLSSFATFQVRDKSE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           RVGRN +T  E  I PRRV+ FKA+++LKKRI+D  R +K
Sbjct: 63  RVGRNPKTGVEASIPPRRVITFKAANVLKKRILDTHRAKK 102


>gi|209548801|ref|YP_002280718.1| integration host factor subunit alpha [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|226709743|sp|B5ZXV9|IHFA_RHILW RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|209534557|gb|ACI54492.1| integration host factor, alpha subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 112

 Score =  111 bits (277), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 73/99 (73%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +S+ ++ GLSR +S   V T+ +E+C++ VRGE +K+SSFATF V+ K  R
Sbjct: 4   KTVTRADLAESVFRKVGLSRTESAELVETVIDEVCNAIVRGETVKLSSFATFQVRDKNER 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           +GRN +T +EV I PRRV+ FKAS++LK RI+     RK
Sbjct: 64  IGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVARK 102


>gi|218459471|ref|ZP_03499562.1| integration host factor subunit alpha [Rhizobium etli Kim 5]
 gi|218662580|ref|ZP_03518510.1| integration host factor subunit alpha [Rhizobium etli IE4771]
          Length = 112

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 52/100 (52%), Positives = 73/100 (73%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +S+ ++ GLSR +S   V T+ +EIC++ VRGE +K+SSFATF V+ K  R
Sbjct: 4   KTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNER 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           +GRN +T +EV I PRRV+ FKAS++LK RI+     RK 
Sbjct: 64  IGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVSRKV 103


>gi|86357171|ref|YP_469063.1| integration host factor subunit alpha [Rhizobium etli CFN 42]
 gi|123738362|sp|Q2KA00|IHFA_RHIEC RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|86281273|gb|ABC90336.1| integration host factor alpha-subunit protein [Rhizobium etli CFN
           42]
          Length = 112

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 52/100 (52%), Positives = 73/100 (73%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +S+ ++ GLSR +S   V T+ +EIC++ VRGE +K+SSFATF V+ K  R
Sbjct: 4   KTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNER 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           +GRN +T +EV I PRRV+ FKAS++LK RI+     RK 
Sbjct: 64  IGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVTRKV 103


>gi|218682312|ref|ZP_03529913.1| integration host factor subunit alpha [Rhizobium etli CIAT 894]
          Length = 112

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 73/99 (73%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +S+ ++ GLSR +S   V T+ +E+C++ VRGE +K+SSFATF V+ K  R
Sbjct: 4   KTVTRADLAESVFRKVGLSRTESAELVETVIDEVCNAIVRGETVKLSSFATFQVRDKNER 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           +GRN +T +EV I PRRV+ FKAS++LK RI+     RK
Sbjct: 64  IGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVSRK 102


>gi|163843049|ref|YP_001627453.1| integration host factor subunit alpha [Brucella suis ATCC 23445]
 gi|189044695|sp|B0CLA3|IHFA_BRUSI RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|163673772|gb|ABY37883.1| integration host factor, alpha subunit [Brucella suis ATCC 23445]
          Length = 107

 Score =  110 bits (276), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 75/99 (75%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DLV+++ ++ GLSR +S   V  + +E+CD+ V GE +K+SSFATF V+ K  R
Sbjct: 4   KTVTRADLVEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNER 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           +GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+
Sbjct: 64  IGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQ 102


>gi|319405751|emb|CBI79374.1| integration host factor alpha subunit [Bartonella sp. AR 15-3]
          Length = 103

 Score =  110 bits (275), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 52/100 (52%), Positives = 71/100 (71%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           SKT+TR+DL  ++ ++ GLS  +S   V  +  EIC+S V+GE +K+SSFATF V+ K  
Sbjct: 3   SKTVTRADLAGAVCRKVGLSHTESADLVELVLGEICNSLVKGEMVKLSSFATFQVRDKSE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           RVGRN +T  E  I PRRVV FKA+++LKKRI+D  R +K
Sbjct: 63  RVGRNPKTGVEASIPPRRVVTFKAANVLKKRILDTHRAKK 102


>gi|13476953|ref|NP_108523.1| integration host factor subunit alpha [Mesorhizobium loti
          MAFF303099]
 gi|260460934|ref|ZP_05809184.1| integration host factor, alpha subunit [Mesorhizobium
          opportunistum WSM2075]
 gi|21362612|sp|Q982Z7|IHFA_RHILO RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|14027716|dbj|BAB54309.1| integration host factor alpha subunit [Mesorhizobium loti
          MAFF303099]
 gi|259033511|gb|EEW34772.1| integration host factor, alpha subunit [Mesorhizobium
          opportunistum WSM2075]
          Length = 107

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 71/92 (77%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR+DL +++ ++ GLSR +S   V  + +EIC++ VRGE +K+SSFATFHV+ K  R
Sbjct: 4  KTLTRADLAEAVYRKVGLSRTESAELVEAVLDEICEAIVRGETVKLSSFATFHVRSKNER 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +GRN +T +EV I PRRV+ FK+S++LK RI+
Sbjct: 64 IGRNPKTGEEVPILPRRVMTFKSSNVLKNRIL 95


>gi|319784144|ref|YP_004143620.1| integration host factor subunit alpha [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
 gi|317170032|gb|ADV13570.1| integration host factor, alpha subunit [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
          Length = 107

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 71/92 (77%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR+DL +++ ++ GLSR +S   V  + +EIC++ VRGE +K+SSFATFHV+ K  R
Sbjct: 4  KTLTRADLAEAVYRKVGLSRTESAELVEAVLDEICEAIVRGETVKLSSFATFHVRSKNER 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +GRN +T +EV I PRRV+ FK+S++LK RI+
Sbjct: 64 IGRNPKTGEEVPILPRRVMTFKSSNVLKSRIL 95


>gi|304391930|ref|ZP_07373872.1| integration host factor, alpha subunit [Ahrensia sp. R2A130]
 gi|303296159|gb|EFL90517.1| integration host factor, alpha subunit [Ahrensia sp. R2A130]
          Length = 106

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/98 (52%), Positives = 73/98 (74%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +++ ++ GLSR +S++ V  +  EIC +AV GE+IK+SSF TF V+ K  R
Sbjct: 4   KTLTRADLAEAVYRKVGLSRLESSKLVEAVLEEICQAAVDGESIKLSSFGTFAVRSKNER 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           VGRN +T +EV I  RRV+VFK S+ILK R++DD + R
Sbjct: 64  VGRNPKTGEEVPITSRRVMVFKPSNILKSRVLDDHKAR 101


>gi|17987462|ref|NP_540096.1| integration host factor subunit alpha [Brucella melitensis bv. 1
           str. 16M]
 gi|17983157|gb|AAL52360.1| integration host factor alpha-subunit [Brucella melitensis bv. 1
           str. 16M]
          Length = 128

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 74/99 (74%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +++ ++ GLSR +S   V  + +E+CD+ V GE +K+SSFATF V+ K  R
Sbjct: 25  KTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNER 84

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           +GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+
Sbjct: 85  IGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQ 123


>gi|225627276|ref|ZP_03785313.1| integration host factor, alpha subunit [Brucella ceti str. Cudo]
 gi|237815217|ref|ZP_04594215.1| integration host factor, alpha subunit [Brucella abortus str. 2308
           A]
 gi|297248134|ref|ZP_06931852.1| integration host factor subunit alpha [Brucella abortus bv. 5 str.
           B3196]
 gi|306841978|ref|ZP_07474652.1| integration host factor, alpha subunit [Brucella sp. BO2]
 gi|225617281|gb|EEH14326.1| integration host factor, alpha subunit [Brucella ceti str. Cudo]
 gi|237790054|gb|EEP64264.1| integration host factor, alpha subunit [Brucella abortus str. 2308
           A]
 gi|297175303|gb|EFH34650.1| integration host factor subunit alpha [Brucella abortus bv. 5 str.
           B3196]
 gi|306287906|gb|EFM59323.1| integration host factor, alpha subunit [Brucella sp. BO2]
          Length = 128

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 74/99 (74%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +++ ++ GLSR +S   V  + +E+CD+ V GE +K+SSFATF V+ K  R
Sbjct: 25  KTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNER 84

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           +GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+
Sbjct: 85  IGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQ 123


>gi|148559603|ref|YP_001258756.1| integration host factor subunit alpha [Brucella ovis ATCC 25840]
 gi|148370860|gb|ABQ60839.1| integration host factor, alpha subunit [Brucella ovis ATCC 25840]
          Length = 128

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 74/99 (74%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +++ ++ GLSR +S   V  + +E+CD+ V GE +K+SSFATF V+ K  R
Sbjct: 25  KTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNER 84

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           +GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+
Sbjct: 85  IGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQ 123


>gi|153009845|ref|YP_001371060.1| integration host factor subunit alpha [Ochrobactrum anthropi ATCC
           49188]
 gi|166918512|sp|A6X1X7|IHFA_OCHA4 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|151561733|gb|ABS15231.1| integration host factor, alpha subunit [Ochrobactrum anthropi ATCC
           49188]
          Length = 107

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 74/99 (74%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +++ ++ GLSR +S   V  + +E+CD+ V GE +K+SSFATF V+ K  R
Sbjct: 4   KTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNER 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           +GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+
Sbjct: 64  IGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRE 102


>gi|23501665|ref|NP_697792.1| integration host factor subunit alpha [Brucella suis 1330]
 gi|62289729|ref|YP_221522.1| integration host factor subunit alpha [Brucella abortus bv. 1 str.
           9-941]
 gi|82699658|ref|YP_414232.1| integration host factor subunit alpha [Brucella melitensis biovar
           Abortus 2308]
 gi|161618744|ref|YP_001592631.1| integration host factor subunit alpha [Brucella canis ATCC 23365]
 gi|189023978|ref|YP_001934746.1| integration host factor subunit alpha [Brucella abortus S19]
 gi|225852293|ref|YP_002732526.1| integration host factor subunit alpha [Brucella melitensis ATCC
           23457]
 gi|254689038|ref|ZP_05152292.1| integration host factor subunit alpha [Brucella abortus bv. 6 str.
           870]
 gi|254693521|ref|ZP_05155349.1| integration host factor subunit alpha [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697173|ref|ZP_05159001.1| integration host factor subunit alpha [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254701551|ref|ZP_05163379.1| integration host factor subunit alpha [Brucella suis bv. 5 str.
           513]
 gi|254704099|ref|ZP_05165927.1| integration host factor subunit alpha [Brucella suis bv. 3 str.
           686]
 gi|254707000|ref|ZP_05168828.1| integration host factor subunit alpha [Brucella pinnipedialis
           M163/99/10]
 gi|254709891|ref|ZP_05171702.1| integration host factor subunit alpha [Brucella pinnipedialis
           B2/94]
 gi|254713892|ref|ZP_05175703.1| integration host factor subunit alpha [Brucella ceti M644/93/1]
 gi|254717051|ref|ZP_05178862.1| integration host factor subunit alpha [Brucella ceti M13/05/1]
 gi|254718895|ref|ZP_05180706.1| integration host factor subunit alpha [Brucella sp. 83/13]
 gi|254730069|ref|ZP_05188647.1| integration host factor subunit alpha [Brucella abortus bv. 4 str.
           292]
 gi|256031384|ref|ZP_05444998.1| integration host factor subunit alpha [Brucella pinnipedialis
           M292/94/1]
 gi|256044463|ref|ZP_05447367.1| integration host factor subunit alpha [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256113307|ref|ZP_05454175.1| integration host factor subunit alpha [Brucella melitensis bv. 3
           str. Ether]
 gi|256159505|ref|ZP_05457273.1| integration host factor subunit alpha [Brucella ceti M490/95/1]
 gi|256254791|ref|ZP_05460327.1| integration host factor subunit alpha [Brucella ceti B1/94]
 gi|256257288|ref|ZP_05462824.1| integration host factor subunit alpha [Brucella abortus bv. 9 str.
           C68]
 gi|256264202|ref|ZP_05466734.1| integration host factor subunit alpha [Brucella melitensis bv. 2
           str. 63/9]
 gi|256369210|ref|YP_003106718.1| integration host factor alpha subunit [Brucella microti CCM 4915]
 gi|260168517|ref|ZP_05755328.1| integration host factor subunit alpha [Brucella sp. F5/99]
 gi|260545518|ref|ZP_05821259.1| integration host factor subunit alpha [Brucella abortus NCTC 8038]
 gi|260563814|ref|ZP_05834300.1| integration host factor subunit alpha [Brucella melitensis bv. 1
           str. 16M]
 gi|260566653|ref|ZP_05837123.1| integration host factor subunit alpha [Brucella suis bv. 4 str. 40]
 gi|260754533|ref|ZP_05866881.1| integration host factor subunit alpha [Brucella abortus bv. 6 str.
           870]
 gi|260757754|ref|ZP_05870102.1| integration host factor subunit alpha [Brucella abortus bv. 4 str.
           292]
 gi|260761579|ref|ZP_05873922.1| integration host factor subunit alpha [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883561|ref|ZP_05895175.1| integration host factor subunit alpha [Brucella abortus bv. 9 str.
           C68]
 gi|261213781|ref|ZP_05928062.1| integration host factor subunit alpha [Brucella abortus bv. 3 str.
           Tulya]
 gi|261218861|ref|ZP_05933142.1| integration host factor subunit alpha [Brucella ceti M13/05/1]
 gi|261221971|ref|ZP_05936252.1| integration host factor subunit alpha [Brucella ceti B1/94]
 gi|261314467|ref|ZP_05953664.1| integration host factor subunit alpha [Brucella pinnipedialis
           M163/99/10]
 gi|261317433|ref|ZP_05956630.1| integration host factor subunit alpha [Brucella pinnipedialis
           B2/94]
 gi|261321640|ref|ZP_05960837.1| integration host factor subunit alpha [Brucella ceti M644/93/1]
 gi|261752100|ref|ZP_05995809.1| integration host factor subunit alpha [Brucella suis bv. 5 str.
           513]
 gi|261754759|ref|ZP_05998468.1| integration host factor subunit alpha [Brucella suis bv. 3 str.
           686]
 gi|261757987|ref|ZP_06001696.1| integration host factor subunit alpha [Brucella sp. F5/99]
 gi|265983880|ref|ZP_06096615.1| integration host factor subunit alpha [Brucella sp. 83/13]
 gi|265988470|ref|ZP_06101027.1| integration host factor subunit alpha [Brucella pinnipedialis
           M292/94/1]
 gi|265990884|ref|ZP_06103441.1| integration host factor subunit alpha [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265994720|ref|ZP_06107277.1| integration host factor subunit alpha [Brucella melitensis bv. 3
           str. Ether]
 gi|265997934|ref|ZP_06110491.1| integration host factor subunit alpha [Brucella ceti M490/95/1]
 gi|294852138|ref|ZP_06792811.1| integration host factor [Brucella sp. NVSL 07-0026]
 gi|306838205|ref|ZP_07471059.1| integration host factor, alpha subunit [Brucella sp. NF 2653]
 gi|306843721|ref|ZP_07476321.1| integration host factor, alpha subunit [Brucella sp. BO1]
 gi|54037412|sp|P64391|IHFA_BRUSU RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|54041367|sp|P64390|IHFA_BRUME RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|75505311|sp|Q57DX3|IHFA_BRUAB RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|123740908|sp|Q2YNB8|IHFA_BRUA2 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|189044694|sp|A9MAF7|IHFA_BRUC2 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|226707370|sp|B2S525|IHFA_BRUA1 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|254803510|sp|C0RIB4|IHFA_BRUMB RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|23347586|gb|AAN29707.1| integration host factor, alpha subunit [Brucella suis 1330]
 gi|62195861|gb|AAX74161.1| HimA, integration host factor, alpha subunit [Brucella abortus bv.
           1 str. 9-941]
 gi|82615759|emb|CAJ10755.1| Histone-like bacterial DNA-binding protein:Integration host factor,
           alpha subunit [Brucella melitensis biovar Abortus 2308]
 gi|161335555|gb|ABX61860.1| integration host factor, alpha subunit [Brucella canis ATCC 23365]
 gi|189019550|gb|ACD72272.1| Integration host factor, alpha subunit [Brucella abortus S19]
 gi|225640658|gb|ACO00572.1| integration host factor, alpha subunit [Brucella melitensis ATCC
           23457]
 gi|255999370|gb|ACU47769.1| integration host factor alpha subunit [Brucella microti CCM 4915]
 gi|260096925|gb|EEW80800.1| integration host factor subunit alpha [Brucella abortus NCTC 8038]
 gi|260153830|gb|EEW88922.1| integration host factor subunit alpha [Brucella melitensis bv. 1
           str. 16M]
 gi|260156171|gb|EEW91251.1| integration host factor subunit alpha [Brucella suis bv. 4 str. 40]
 gi|260668072|gb|EEX55012.1| integration host factor subunit alpha [Brucella abortus bv. 4 str.
           292]
 gi|260672011|gb|EEX58832.1| integration host factor subunit alpha [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260674641|gb|EEX61462.1| integration host factor subunit alpha [Brucella abortus bv. 6 str.
           870]
 gi|260873089|gb|EEX80158.1| integration host factor subunit alpha [Brucella abortus bv. 9 str.
           C68]
 gi|260915388|gb|EEX82249.1| integration host factor subunit alpha [Brucella abortus bv. 3 str.
           Tulya]
 gi|260920555|gb|EEX87208.1| integration host factor subunit alpha [Brucella ceti B1/94]
 gi|260923950|gb|EEX90518.1| integration host factor subunit alpha [Brucella ceti M13/05/1]
 gi|261294330|gb|EEX97826.1| integration host factor subunit alpha [Brucella ceti M644/93/1]
 gi|261296656|gb|EEY00153.1| integration host factor subunit alpha [Brucella pinnipedialis
           B2/94]
 gi|261303493|gb|EEY06990.1| integration host factor subunit alpha [Brucella pinnipedialis
           M163/99/10]
 gi|261737971|gb|EEY25967.1| integration host factor subunit alpha [Brucella sp. F5/99]
 gi|261741853|gb|EEY29779.1| integration host factor subunit alpha [Brucella suis bv. 5 str.
           513]
 gi|261744512|gb|EEY32438.1| integration host factor subunit alpha [Brucella suis bv. 3 str.
           686]
 gi|262552402|gb|EEZ08392.1| integration host factor subunit alpha [Brucella ceti M490/95/1]
 gi|262765833|gb|EEZ11622.1| integration host factor subunit alpha [Brucella melitensis bv. 3
           str. Ether]
 gi|263001668|gb|EEZ14243.1| integration host factor subunit alpha [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263094446|gb|EEZ18268.1| integration host factor subunit alpha [Brucella melitensis bv. 2
           str. 63/9]
 gi|264660667|gb|EEZ30928.1| integration host factor subunit alpha [Brucella pinnipedialis
           M292/94/1]
 gi|264662472|gb|EEZ32733.1| integration host factor subunit alpha [Brucella sp. 83/13]
 gi|294820727|gb|EFG37726.1| integration host factor [Brucella sp. NVSL 07-0026]
 gi|306276031|gb|EFM57740.1| integration host factor, alpha subunit [Brucella sp. BO1]
 gi|306406714|gb|EFM62939.1| integration host factor, alpha subunit [Brucella sp. NF 2653]
          Length = 107

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 74/99 (74%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +++ ++ GLSR +S   V  + +E+CD+ V GE +K+SSFATF V+ K  R
Sbjct: 4   KTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNER 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           +GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+
Sbjct: 64  IGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQ 102


>gi|239831603|ref|ZP_04679932.1| integration host factor, alpha subunit [Ochrobactrum intermedium
           LMG 3301]
 gi|239823870|gb|EEQ95438.1| integration host factor, alpha subunit [Ochrobactrum intermedium
           LMG 3301]
          Length = 132

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 74/99 (74%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +++ ++ GLSR +S   V  + +E+CD+ V GE +K+SSFATF V+ K  R
Sbjct: 29  KTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNER 88

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           +GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+
Sbjct: 89  IGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRE 127


>gi|256060895|ref|ZP_05451053.1| integration host factor subunit alpha [Brucella neotomae 5K33]
 gi|261324891|ref|ZP_05964088.1| integration host factor subunit alpha [Brucella neotomae 5K33]
 gi|261300871|gb|EEY04368.1| integration host factor subunit alpha [Brucella neotomae 5K33]
          Length = 107

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 74/99 (74%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +++ ++ GLSR +S   +  + +E+CD+ V GE +K+SSFATF V+ K  R
Sbjct: 4   KTVTRADLAEAVYRKVGLSRTESAALIEMILDEVCDAIVNGETVKLSSFATFQVRDKNER 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           +GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+
Sbjct: 64  IGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQ 102


>gi|288957866|ref|YP_003448207.1| integration host factor subunit alpha [Azospirillum sp. B510]
 gi|288910174|dbj|BAI71663.1| integration host factor subunit alpha [Azospirillum sp. B510]
          Length = 111

 Score =  107 bits (267), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 50/96 (52%), Positives = 69/96 (71%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+TR+ L +++ +E GLSR +S   V T+ +EI D+  RGE +KISSF +F V+QKG RV
Sbjct: 5   TVTRAQLSEAVYQEVGLSRNESADLVETVLDEISDALARGEMVKISSFGSFQVRQKGERV 64

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           GRN +T +EV I PRRV+VF+AS +LK RI +   G
Sbjct: 65  GRNPKTGEEVPILPRRVLVFRASHVLKHRINEVQEG 100


>gi|163759219|ref|ZP_02166305.1| integration host factor alpha subunit [Hoeflea phototrophica
           DFL-43]
 gi|162283623|gb|EDQ33908.1| integration host factor alpha subunit [Hoeflea phototrophica
           DFL-43]
          Length = 107

 Score =  107 bits (266), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 72/99 (72%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KTITR+DL +++ ++ GLSR +S   V  +  E+ +S VRGE++K+SSFATF V++K  R
Sbjct: 4   KTITRADLAEAVFRKVGLSRTESAELVEMVLEEVSNSIVRGESVKLSSFATFQVREKKER 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           +GRN +T +EV I PRRV+ FKAS++LK R++     RK
Sbjct: 64  IGRNPKTGEEVPISPRRVMTFKASNVLKNRVLKGHLARK 102


>gi|319408456|emb|CBI82111.1| integration host factor alpha subunit [Bartonella schoenbuchensis
           R1]
          Length = 103

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 71/99 (71%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL  ++ ++ GLS  +S+  V  + +EIC+S V+ E +K+SSFATF V+ K  R
Sbjct: 4   KTVTRADLASAVCRKVGLSYTESSALVELILDEICNSLVKDEVVKLSSFATFQVRSKSER 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           +GRN +T  E  I PRRVV FKA++ILKKRI+D  R ++
Sbjct: 64  IGRNPKTGIEAPIPPRRVVTFKAANILKKRILDAHRAKQ 102


>gi|154248306|ref|YP_001419264.1| integration host factor subunit alpha [Xanthobacter autotrophicus
          Py2]
 gi|226709760|sp|A7INL3|IHFA_XANP2 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|154162391|gb|ABS69607.1| integration host factor, alpha subunit [Xanthobacter
          autotrophicus Py2]
          Length = 105

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 68/92 (73%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +T+TR+DL +++ ++ GLSR +S + V  +  EI D   RGE +K+SSF +F V++KG 
Sbjct: 3  GRTVTRADLCEAVYQQVGLSRTESAQLVEMVLKEIADCLARGETVKLSSFGSFVVREKGE 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RVGRN +T +EV I+PRRV+VFK SSILK RI
Sbjct: 63 RVGRNPKTGEEVPIEPRRVMVFKPSSILKHRI 94


>gi|115524833|ref|YP_781744.1| integration host factor, alpha subunit [Rhodopseudomonas palustris
           BisA53]
 gi|122295977|sp|Q07MS0|IHFA_RHOP5 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|115518780|gb|ABJ06764.1| integration host factor, alpha subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 113

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 70/103 (67%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR DL +++ ++ GLSR +S+ FV  +  EI D   +GE +K+SSF +F V+QKG R
Sbjct: 6   KTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRQKGQR 65

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           +GRN +T  EV I PRRV+VFK S+ILK+RI     G   N D
Sbjct: 66  IGRNPKTGTEVPISPRRVMVFKPSAILKQRINGQANGSMSNSD 108


>gi|298291651|ref|YP_003693590.1| integration host factor, subunit alpha [Starkeya novella DSM 506]
 gi|296928162|gb|ADH88971.1| integration host factor, alpha subunit [Starkeya novella DSM 506]
          Length = 101

 Score =  104 bits (259), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 68/91 (74%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +TITR+DL +++ +  GLSR +S   V T+ +EI D   RGE +K+SSF +F V+QKG R
Sbjct: 4  RTITRADLCEAVYQRVGLSRTESAALVETVLSEIADCVARGETVKLSSFGSFVVRQKGER 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +GRN +T +EV I PRRV+VFK S+ILK++I
Sbjct: 64 IGRNPKTGEEVPIAPRRVMVFKPSNILKQQI 94


>gi|307945252|ref|ZP_07660588.1| integration host factor subunit alpha [Roseibium sp. TrichSKD4]
 gi|307771125|gb|EFO30350.1| integration host factor subunit alpha [Roseibium sp. TrichSKD4]
          Length = 104

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 48/98 (48%), Positives = 72/98 (73%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +TITR+DL +++ ++ GLSR +S+  V  +  EI D  V GE++K+SSF +F V+ KG R
Sbjct: 4   RTITRADLCEAVYQKVGLSRTESSELVERVLAEISDCLVTGESVKLSSFGSFVVRSKGER 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           +GRN +T +EV I PRRV+VFK S++LK+RI D + G+
Sbjct: 64  IGRNPKTGEEVPISPRRVMVFKPSNVLKQRINDSLTGK 101


>gi|146341332|ref|YP_001206380.1| integration host factor subunit alpha [Bradyrhizobium sp. ORS278]
 gi|166918500|sp|A4YW83|IHFA_BRASO RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|146194138|emb|CAL78159.1| integration host factor alpha-subunit (IHF-alpha) [Bradyrhizobium
           sp. ORS278]
          Length = 119

 Score =  103 bits (257), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 51/107 (47%), Positives = 71/107 (66%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR DL +++ ++ GLSR +S+ FV  +  EI D   RGE +K+SSF +F V++KG R
Sbjct: 6   KTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVRKKGQR 65

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
           +GRN +T  EV I PRRV+VFK S+ILK+RI       K N +   S
Sbjct: 66  IGRNPKTGTEVPISPRRVMVFKPSAILKQRINGQQANGKMNGESAPS 112


>gi|83593003|ref|YP_426755.1| integration host factor, subunit alpha [Rhodospirillum rubrum ATCC
           11170]
 gi|123739530|sp|Q2RTS7|IHFA_RHORT RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|83575917|gb|ABC22468.1| Integration host factor, alpha subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 105

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 70/101 (69%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KTITR+ L +++ +E GLSR +S   +  + NE+ ++ V G+ +KISSF +F V++KG R
Sbjct: 4   KTITRAQLSEAVYQEVGLSRNESADLLEMVLNEMSEALVEGDTVKISSFGSFSVREKGER 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           VGRN +T +EV I PRRV+VF+ S +LK RI D   G + N
Sbjct: 64  VGRNPKTGEEVPILPRRVLVFRPSQLLKARINDGAVGSQIN 104


>gi|89069686|ref|ZP_01157023.1| integration host factor, alpha subunit [Oceanicola granulosus
          HTCC2516]
 gi|89044766|gb|EAR50872.1| integration host factor, alpha subunit [Oceanicola granulosus
          HTCC2516]
          Length = 101

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 65/92 (70%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +KT+TR DL +++  E GLSR DS   V ++   + D+ VRGE +KISSF TF V++K +
Sbjct: 3  NKTLTRMDLAEAVHAEVGLSRNDSAELVESILTHVSDALVRGETVKISSFGTFSVREKAA 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RVGRN +T +EV I PRRV+ F+ S ++K R+
Sbjct: 63 RVGRNPKTGEEVPIHPRRVLTFRPSHLMKDRV 94


>gi|328543549|ref|YP_004303658.1| integration host factor subunit alpha [polymorphum gilvum
          SL003B-26A1]
 gi|326413293|gb|ADZ70356.1| Integration host factor subunit alpha [Polymorphum gilvum
          SL003B-26A1]
          Length = 104

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 72/96 (75%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          S+TITR+DL +++ ++ GLSR +S+  V  + +EI D  V GE++K+SSF +F V+ KG 
Sbjct: 3  SRTITRADLCEAVYQKVGLSRTESSELVERVLSEISDCLVTGESVKLSSFGSFVVRSKGE 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          R+GRN +T +EV I PRRV+VFK S+ILK+RI + +
Sbjct: 63 RIGRNPKTGEEVPISPRRVMVFKPSNILKQRINESL 98


>gi|316934097|ref|YP_004109079.1| integration host factor subunit alpha [Rhodopseudomonas palustris
          DX-1]
 gi|315601811|gb|ADU44346.1| integration host factor, alpha subunit [Rhodopseudomonas
          palustris DX-1]
          Length = 118

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 67/91 (73%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T+TR DL +++ ++ GLSR +S+ FV  +  EI D   RGE +K+SSF +F V+QKG R
Sbjct: 4  RTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFLVRQKGER 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          VGRN +T  EV I PRRV+VFK S+ILK+RI
Sbjct: 64 VGRNPKTGTEVPISPRRVMVFKPSAILKQRI 94


>gi|209964628|ref|YP_002297543.1| integration host factor subunit alpha [Rhodospirillum centenum
          SW]
 gi|209958094|gb|ACI98730.1| integration host factor, alpha subunit [Rhodospirillum centenum
          SW]
          Length = 106

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 70/97 (72%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+ T+TR+ L +++ +E GLSR +S   V ++ +EI D+  RG+ +KISSF +F V+ KG
Sbjct: 1  MANTVTRAQLSEAVYQEVGLSRNESADLVESVLDEISDALARGDMVKISSFGSFSVRAKG 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           R+GRN +T +EV I PRRV+VF+AS +LK RI + +
Sbjct: 61 QRIGRNPKTGEEVPILPRRVLVFRASHVLKNRINEGL 97


>gi|158423917|ref|YP_001525209.1| integration host factor subunit alpha [Azorhizobium caulinodans
          ORS 571]
 gi|172047953|sp|A8I5K8|IHFA_AZOC5 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|158330806|dbj|BAF88291.1| integration host factor alpha subunit [Azorhizobium caulinodans
          ORS 571]
          Length = 105

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 66/92 (71%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +TITR+DL +++ ++ GLSR +S   V  +  EI D   +GE +K+SSF +F V+ KG 
Sbjct: 3  GRTITRADLCEAVYQQVGLSRTESAALVEMVLREIADCLAKGETVKLSSFGSFVVRDKGQ 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RVGRN +T +EV I+PRRV+VFK SSILK RI
Sbjct: 63 RVGRNPKTGEEVPIEPRRVMVFKPSSILKNRI 94


>gi|114704822|ref|ZP_01437730.1| integration host factor alpha subunit [Fulvimarina pelagi HTCC2506]
 gi|114539607|gb|EAU42727.1| integration host factor alpha subunit [Fulvimarina pelagi HTCC2506]
          Length = 119

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 75/110 (68%), Gaps = 1/110 (0%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +++ ++ GLSR +S   V  +  E+C++   GEA+KISSF +F V+ K  R
Sbjct: 4   KTLTRADLSEAVFRKIGLSRTESATLVEMVLEEVCETISSGEAVKISSFGSFLVRDKNER 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD-DMRGRKCNKDDVTSPS 111
           VGRN +T +EV I PR+V VFK S++LK+RI++   R  + + DD   P+
Sbjct: 64  VGRNPKTGEEVPISPRKVTVFKPSNVLKERILEAHSRKNRADNDDTYVPA 113


>gi|39935809|ref|NP_948085.1| integration host factor subunit alpha [Rhodopseudomonas palustris
          CGA009]
 gi|192291397|ref|YP_001992002.1| integration host factor subunit alpha [Rhodopseudomonas palustris
          TIE-1]
 gi|81698181|sp|Q6N676|IHFA_RHOPA RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709744|sp|B3QJM1|IHFA_RHOPT RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|39649662|emb|CAE28184.1| integration host factor alpha subunit [Rhodopseudomonas palustris
          CGA009]
 gi|192285146|gb|ACF01527.1| integration host factor, alpha subunit [Rhodopseudomonas
          palustris TIE-1]
          Length = 118

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 67/91 (73%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T+TR DL +++ ++ GLSR +S+ FV  +  EI D   RGE +K+SSF +F V+QKG R
Sbjct: 4  RTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFLVRQKGQR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +GRN +T  EV I PRRV+VFK S+ILK+RI
Sbjct: 64 IGRNPKTGTEVPISPRRVMVFKPSAILKQRI 94


>gi|85716272|ref|ZP_01047246.1| integration host factor, alpha subunit [Nitrobacter sp. Nb-311A]
 gi|85696944|gb|EAQ34828.1| integration host factor, alpha subunit [Nitrobacter sp. Nb-311A]
          Length = 106

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 70/100 (70%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR DL +++ K+ GLSR +S+ FV  +  EI D   +GE +K+SSF +F V++KG 
Sbjct: 5   GKTVTRVDLCEAVYKKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQ 64

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           R+GRN +T  EV I PRRV+VFK S+ILK+RI  +  G K
Sbjct: 65  RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINSNGAGAK 104


>gi|75675600|ref|YP_318021.1| integration host factor, alpha subunit [Nitrobacter winogradskyi
           Nb-255]
 gi|123773269|sp|Q3SSS2|IHFA_NITWN RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|74420470|gb|ABA04669.1| integration host factor, alpha subunit [Nitrobacter winogradskyi
           Nb-255]
          Length = 106

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 70/100 (70%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR DL +++ K+ GLSR +S+ FV  +  EI D   +GE +K+SSF +F V++KG 
Sbjct: 5   GKTVTRVDLCEAVYKKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQ 64

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           R+GRN +T  EV I PRRV+VFK S+ILK+RI  +  G K
Sbjct: 65  RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINSNGAGGK 104


>gi|148255979|ref|YP_001240564.1| integration host factor subunit alpha [Bradyrhizobium sp. BTAi1]
 gi|166918499|sp|A5EKG4|IHFA_BRASB RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|146408152|gb|ABQ36658.1| integration host factor alpha-subunit (IHF-alpha) [Bradyrhizobium
           sp. BTAi1]
          Length = 119

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 70/104 (67%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR DL +++ ++ GLSR +S+ FV  +  EI D   RGE +K+SSF +F V++KG 
Sbjct: 5   GKTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVRKKGQ 64

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           R+GRN +T  EV I PRRV+VFK S+ILK+RI       K N +
Sbjct: 65  RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINGQQGSGKMNGE 108


>gi|92117139|ref|YP_576868.1| integration host factor subunit alpha [Nitrobacter hamburgensis
           X14]
 gi|123265314|sp|Q1QMY9|IHFA_NITHX RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|91800033|gb|ABE62408.1| integration host factor, alpha subunit [Nitrobacter hamburgensis
           X14]
          Length = 110

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 69/98 (70%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR DL +++ K+ GLSR +S+ FV  +  EI D   +GE +K+SSF +F V++KG 
Sbjct: 5   GKTVTRVDLCEAVYKKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQ 64

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           R+GRN +T  EV I PRRV+VFK S+ILK+RI  +  G
Sbjct: 65  RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINGNSNG 102


>gi|27380130|ref|NP_771659.1| integration host factor subunit alpha [Bradyrhizobium japonicum
           USDA 110]
 gi|27353284|dbj|BAC50284.1| integration host factor alpha subunit [Bradyrhizobium japonicum
           USDA 110]
          Length = 119

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 68/92 (73%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           SKT+TR DL +++ ++ GLSR +S+ FV  +  EI D   +GE +K+SSF +F V++KG 
Sbjct: 11  SKTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQ 70

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R+GRN +T  EV I PRRV+VFK S+ILK+RI
Sbjct: 71  RIGRNPKTGTEVPISPRRVMVFKPSAILKQRI 102


>gi|56697343|ref|YP_167711.1| integration host factor subunit alpha [Ruegeria pomeroyi DSS-3]
 gi|81676195|sp|Q5LQJ4|IHFA_SILPO RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|56679080|gb|AAV95746.1| integration host factor, alpha subunit [Ruegeria pomeroyi DSS-3]
          Length = 100

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 67/91 (73%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++ +E GLSR +S + V ++ N + D+ VRGE +KISSF TF V+ K +R
Sbjct: 4  KTLTRMDLSEAVFREVGLSRNESAQLVESMLNHMSDALVRGEQVKISSFGTFSVRDKSAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          VGRN +T +EV I PRRV+ F+ S ++K+R+
Sbjct: 64 VGRNPKTGEEVPIQPRRVLTFRPSHLMKERV 94


>gi|83311454|ref|YP_421718.1| integration host factor subunit alpha [Magnetospirillum magneticum
           AMB-1]
 gi|123740482|sp|Q2W4R6|IHFA_MAGMM RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|82946295|dbj|BAE51159.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum
           AMB-1]
          Length = 106

 Score =  101 bits (251), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 70/99 (70%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KTITR+ L +++ +E GLSR +S   +  + +EI  +  +G+A+KISSF +F V+ KG R
Sbjct: 4   KTITRAQLSEAVYQEVGLSRNESADLLEAVLDEISGALAKGDAVKISSFGSFSVRSKGQR 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           +GRN +T +EV I PRRV+VF+ S +LKK+I D M  ++
Sbjct: 64  IGRNPKTGEEVPITPRRVLVFRPSQLLKKKINDGMAAKR 102


>gi|163739611|ref|ZP_02147020.1| integration host factor, alpha subunit [Phaeobacter gallaeciensis
          BS107]
 gi|161387070|gb|EDQ11430.1| integration host factor, alpha subunit [Phaeobacter gallaeciensis
          BS107]
          Length = 100

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 67/96 (69%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++ +E GLSR +S + V +L   + D+ VRGE +KISSF TF V+ K +R
Sbjct: 4  KTLTRMDLSEAVFREVGLSRNESAQLVESLLQHMSDALVRGEQVKISSFGTFSVRDKSAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          VGRN +T +EV I PRRV+ F+ S ++K R+ D  R
Sbjct: 64 VGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVADGNR 99


>gi|259419005|ref|ZP_05742922.1| integration host factor, alpha subunit [Silicibacter sp. TrichCH4B]
 gi|259345227|gb|EEW57081.1| integration host factor, alpha subunit [Silicibacter sp. TrichCH4B]
          Length = 109

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 66/93 (70%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KTITR DL +++ +E GLSR +S + V ++   + D+ VRGE +KISSF TF V+ K +R
Sbjct: 13  KTITRMDLSEAVFREVGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDKSAR 72

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           VGRN +T +EV I PRRV+ F+ S ++K R+ D
Sbjct: 73  VGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVAD 105


>gi|99080754|ref|YP_612908.1| integration host factor subunit alpha [Ruegeria sp. TM1040]
 gi|123379018|sp|Q1GI70|IHFA_SILST RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|99037034|gb|ABF63646.1| integration host factor alpha subunit [Ruegeria sp. TM1040]
          Length = 100

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 66/93 (70%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KTITR DL +++ +E GLSR +S + V ++   + D+ VRGE +KISSF TF V+ K +R
Sbjct: 4  KTITRMDLSEAVFREVGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDKSAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          VGRN +T +EV I PRRV+ F+ S ++K R+ D
Sbjct: 64 VGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVAD 96


>gi|149202720|ref|ZP_01879692.1| integration host factor, alpha subunit [Roseovarius sp. TM1035]
 gi|149144002|gb|EDM32036.1| integration host factor, alpha subunit [Roseovarius sp. TM1035]
          Length = 100

 Score =  100 bits (250), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 67/93 (72%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL ++I +E GLSR D+ + V ++   + D+ VRGE +KISSF TF V+ K +R
Sbjct: 4  KTLTRMDLSEAIFREVGLSRNDAAQLVESVLGHMSDALVRGEQVKISSFGTFSVRDKTAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          VGRN +T +EV I+PRRV+ F+ S ++K R+ D
Sbjct: 64 VGRNPKTGEEVPINPRRVLTFRPSHLMKDRVAD 96


>gi|220926815|ref|YP_002502117.1| integration host factor subunit alpha [Methylobacterium nodulans
          ORS 2060]
 gi|219951422|gb|ACL61814.1| integration host factor, alpha subunit [Methylobacterium nodulans
          ORS 2060]
          Length = 105

 Score =  100 bits (249), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 65/91 (71%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR+DL +++ +  GLSR +S   V T+ +EIC     GE +K+SSF +F V+ KG R
Sbjct: 4  KTVTRADLTEAVYQRVGLSRTESAALVETVLSEICTCLASGETVKLSSFGSFVVRDKGKR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          VGRN +T  EV I+PRRV+VFK S++LK RI
Sbjct: 64 VGRNPKTGVEVAIEPRRVMVFKPSNVLKARI 94


>gi|86749768|ref|YP_486264.1| integration host factor subunit alpha [Rhodopseudomonas palustris
          HaA2]
 gi|123004139|sp|Q2IWQ7|IHFA_RHOP2 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|86572796|gb|ABD07353.1| integration host factor, alpha subunit [Rhodopseudomonas
          palustris HaA2]
          Length = 123

 Score =  100 bits (249), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 67/91 (73%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T+TR DL +++ ++ GLSR +S+ FV  +  EI D   +GE +K+SSF +F V+QKG R
Sbjct: 6  RTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVRQKGQR 65

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +GRN +T  EV I PRRV+VFK S+ILK+RI
Sbjct: 66 IGRNPKTGTEVPISPRRVMVFKPSAILKQRI 96


>gi|85703262|ref|ZP_01034366.1| integration host factor, alpha subunit [Roseovarius sp. 217]
 gi|85672190|gb|EAQ27047.1| integration host factor, alpha subunit [Roseovarius sp. 217]
          Length = 121

 Score =  100 bits (249), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 68/93 (73%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR DL +++ +E GLSR D+ + V ++ + + D+ VRGE +KISSF TF V+ K +R
Sbjct: 25  KTLTRMDLSEAVFREVGLSRNDAAQLVESVLDHMSDALVRGEQVKISSFGTFSVRDKTAR 84

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           VGRN +T +EV I+PRRV+ F+ S ++K R+ D
Sbjct: 85  VGRNPKTGEEVPINPRRVLTFRPSHLMKDRVAD 117


>gi|170744277|ref|YP_001772932.1| integration host factor subunit alpha [Methylobacterium sp. 4-46]
 gi|226709735|sp|B0UR46|IHFA_METS4 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|168198551|gb|ACA20498.1| integration host factor, alpha subunit [Methylobacterium sp.
          4-46]
          Length = 104

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 65/91 (71%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR+DL +++ +  GLSR +S   V T+ +EIC     GE +K+SSF +F V+ KG R
Sbjct: 4  KTVTRADLTEAVYQRVGLSRTESAALVETVLSEICTCLASGETVKLSSFGSFVVRDKGKR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          VGRN +T  EV I+PRRV+VFK S++LK RI
Sbjct: 64 VGRNPKTGVEVAIEPRRVMVFKPSNVLKARI 94


>gi|84687534|ref|ZP_01015410.1| Histone-like DNA-binding protein (IHF) [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664443|gb|EAQ10931.1| Histone-like DNA-binding protein (IHF) [Rhodobacterales bacterium
           HTCC2654]
          Length = 110

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 66/91 (72%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR DL +++ +E GLSR +S + V ++   + D+ V+GE +KISSF TF V+ K +R
Sbjct: 14  KTLTRMDLSEAVFREVGLSRNESAQLVESVLGHVSDALVKGETVKISSFGTFSVRDKAAR 73

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           VGRN +T QEV I PRRV+ F+ S I+K+R+
Sbjct: 74  VGRNPKTGQEVPISPRRVLTFRPSQIMKERV 104


>gi|254465016|ref|ZP_05078427.1| integration host factor, alpha subunit [Rhodobacterales bacterium
          Y4I]
 gi|206685924|gb|EDZ46406.1| integration host factor, alpha subunit [Rhodobacterales bacterium
          Y4I]
          Length = 100

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 67/96 (69%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++ +E GLSR +S + V ++   + D+ VRGE +KISSF TF V+ K +R
Sbjct: 4  KTLTRMDLSEAVFREVGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDKSAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          VGRN +T +EV I PRRV+ F+ S ++K R+ D  R
Sbjct: 64 VGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVADGNR 99


>gi|126739445|ref|ZP_01755138.1| integration host factor, alpha subunit [Roseobacter sp.
          SK209-2-6]
 gi|254477557|ref|ZP_05090943.1| integration host factor, alpha subunit [Ruegeria sp. R11]
 gi|126719545|gb|EBA16254.1| integration host factor, alpha subunit [Roseobacter sp.
          SK209-2-6]
 gi|214031800|gb|EEB72635.1| integration host factor, alpha subunit [Ruegeria sp. R11]
          Length = 100

 Score =  100 bits (249), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 67/96 (69%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++ +E GLSR +S + V ++   + D+ VRGE +KISSF TF V+ K +R
Sbjct: 4  KTLTRMDLSEAVFREVGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDKSAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          VGRN +T +EV I PRRV+ F+ S ++K R+ D  R
Sbjct: 64 VGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVADGNR 99


>gi|90424175|ref|YP_532545.1| integration host factor subunit alpha [Rhodopseudomonas palustris
          BisB18]
 gi|123089633|sp|Q214G0|IHFA_RHOPB RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|90106189|gb|ABD88226.1| integration host factor, alpha subunit [Rhodopseudomonas
          palustris BisB18]
          Length = 108

 Score =  100 bits (248), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 67/91 (73%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++ ++ GLSR +S+ FV  +  EI D   +GE +K+SSF +F V++KG R
Sbjct: 6  KTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQR 65

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +GRN +T  EV I PRRV+VFK S+ILK+RI
Sbjct: 66 IGRNPKTGTEVPISPRRVMVFKPSAILKQRI 96


>gi|209885010|ref|YP_002288867.1| integration host factor, alpha subunit [Oligotropha carboxidovorans
           OM5]
 gi|226709737|sp|B6JGR8|IHFA_OLICO RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|209873206|gb|ACI93002.1| integration host factor, alpha subunit [Oligotropha carboxidovorans
           OM5]
          Length = 114

 Score =  100 bits (248), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 71/104 (68%), Gaps = 1/104 (0%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR DL +++ ++ GLSR +S  FV  +  EI D   +GE +K+SSF +F V++KG 
Sbjct: 5   GKTVTRVDLCEAVYQKVGLSRTESAAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGE 64

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           R+GRN +T  EV I PRRV+VFK S+ILK+RI ++    K N D
Sbjct: 65  RIGRNPKTGTEVPISPRRVMVFKPSAILKQRI-NNGAAAKTNGD 107


>gi|91977158|ref|YP_569817.1| integration host factor subunit alpha [Rhodopseudomonas palustris
          BisB5]
 gi|123735393|sp|Q136S3|IHFA_RHOPS RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|91683614|gb|ABE39916.1| integration host factor, alpha subunit [Rhodopseudomonas
          palustris BisB5]
          Length = 123

 Score =  100 bits (248), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 67/91 (73%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T+TR DL +++ ++ GLSR +S+ FV  +  EI D   +GE +K+SSF +F V+QKG R
Sbjct: 6  RTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVRQKGQR 65

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +GRN +T  EV I PRRV+VFK S+ILK+RI
Sbjct: 66 IGRNPKTGTEVPISPRRVMVFKPSAILKQRI 96


>gi|299135072|ref|ZP_07028263.1| integration host factor, alpha subunit [Afipia sp. 1NLS2]
 gi|298590049|gb|EFI50253.1| integration host factor, alpha subunit [Afipia sp. 1NLS2]
          Length = 114

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 66/91 (72%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++ ++ GLSR +S  FV  +  EI D   +GE +K+SSF +F V++KG R
Sbjct: 6  KTVTRVDLCEAVYQKVGLSRTESAAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGER 65

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +GRN +T  EV I PRRV+VFK S+ILK+RI
Sbjct: 66 IGRNPKTGTEVPISPRRVMVFKPSAILKQRI 96


>gi|254486218|ref|ZP_05099423.1| integration host factor, alpha subunit [Roseobacter sp. GAI101]
 gi|214043087|gb|EEB83725.1| integration host factor, alpha subunit [Roseobacter sp. GAI101]
          Length = 110

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 69/93 (74%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR DL +++ +E GLSR +S + V ++ + + D+ V+GE +KISSF TF V++K +R
Sbjct: 14  KTLTRMDLSEAVFREVGLSRNESAQLVESVLDHMSDALVQGEQVKISSFGTFSVREKSAR 73

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           VGRN +T +EV I+PRRV+ F+ S ++K R+ D
Sbjct: 74  VGRNPKTGEEVPINPRRVLTFRPSHLMKDRVAD 106


>gi|332186955|ref|ZP_08388696.1| integration host factor, alpha subunit [Sphingomonas sp. S17]
 gi|332012965|gb|EGI55029.1| integration host factor, alpha subunit [Sphingomonas sp. S17]
          Length = 99

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 65/91 (71%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+DL +S+ +E GLSR DS + V  +  E+CD+  RGE +KIS F TF ++ KG RV
Sbjct: 6  TLTRADLAESLHQEVGLSRSDSAQVVEQILVEMCDALSRGENVKISGFGTFVLRDKGERV 65

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  EV I PRRV+ F+AS +++ RI+
Sbjct: 66 GRNPKTGVEVPIAPRRVLTFRASQMMRDRIV 96


>gi|159044270|ref|YP_001533064.1| integration host factor subunit alpha [Dinoroseobacter shibae DFL
           12]
 gi|189044700|sp|A8LLT5|IHFA_DINSH RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|157912030|gb|ABV93463.1| integration host factor subunit alpha [Dinoroseobacter shibae DFL
           12]
          Length = 101

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 69/98 (70%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR DL  ++ +E GLSR +S + V ++   + D+ VRGE++KISSF TF V+ K +R
Sbjct: 4   KTLTRMDLSDAVFREVGLSRNESAQLVESILTHMSDALVRGESVKISSFGTFSVRDKSAR 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           +GRN +T +EV I PRRV+ F+ S ++K+R+ +  R R
Sbjct: 64  IGRNPKTGEEVPIHPRRVLTFRPSHLMKERVANGNRNR 101


>gi|188581269|ref|YP_001924714.1| histone family protein DNA-binding protein [Methylobacterium
          populi BJ001]
 gi|226709733|sp|B1ZKI7|IHFA_METPB RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|179344767|gb|ACB80179.1| histone family protein DNA-binding protein [Methylobacterium
          populi BJ001]
          Length = 108

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 67/92 (72%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           KT+TR+DL +++ ++ GLSR +S   V T+  EIC+    GE +K+SSF +F V+ KG 
Sbjct: 3  GKTVTRADLSEAVYQQVGLSRAESAALVETVLGEICNCLSSGETVKLSSFGSFVVRSKGK 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R+GRN +T  EV+I+PR+V+VFK S++LK RI
Sbjct: 63 RIGRNPKTGVEVEIEPRQVMVFKPSNVLKARI 94


>gi|121602866|ref|YP_988943.1| integration host factor subunit alpha [Bartonella bacilliformis
          KC583]
 gi|166918498|sp|A1USJ0|IHFA_BARBK RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|120615043|gb|ABM45644.1| integration host factor, alpha subunit [Bartonella bacilliformis
          KC583]
          Length = 103

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 66/93 (70%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T+TR+DL  ++ ++ GLS  +S   V  + +EI DS V+GE +K+S FATF V+ K  R
Sbjct: 4  RTVTRADLASAVCRKVGLSYTESAALVELILSEISDSLVKGEMVKLSCFATFQVRSKSRR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +GRN +T  E  I PRRVV FKA++ILK+RI+D
Sbjct: 64 IGRNPKTGIEAPIPPRRVVTFKAANILKQRILD 96


>gi|84500953|ref|ZP_00999188.1| integration host factor, alpha subunit [Oceanicola batsensis
          HTCC2597]
 gi|84391020|gb|EAQ03438.1| integration host factor, alpha subunit [Oceanicola batsensis
          HTCC2597]
          Length = 100

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 66/95 (69%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR DL +++ +E GLSR DS + V ++   + D+ VRGE +KISSF TF V+ K +RV
Sbjct: 5  TLTRLDLSEAVFREVGLSRNDSAQLVESVLTHMSDALVRGEQVKISSFGTFSVRDKAARV 64

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +EV I PRRV+ F+ S ++K R+ D  R
Sbjct: 65 GRNPKTGEEVPISPRRVLTFRPSHLMKDRVADGNR 99


>gi|260433446|ref|ZP_05787417.1| integration host factor, alpha subunit [Silicibacter
          lacuscaerulensis ITI-1157]
 gi|260417274|gb|EEX10533.1| integration host factor, alpha subunit [Silicibacter
          lacuscaerulensis ITI-1157]
          Length = 100

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 66/91 (72%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++ +E GLSR +S + V ++ N + D+ VRGE +KISSF TF V+ K +R
Sbjct: 4  KTLTRMDLSEAVFREVGLSRNESAQLVESILNHMSDALVRGEQVKISSFGTFSVRDKSAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +GRN +T +EV I PRRV+ F+ S ++K R+
Sbjct: 64 IGRNPKTGEEVPIQPRRVLTFRPSHLMKDRV 94


>gi|144899188|emb|CAM76052.1| Histone-like bacterial DNA-binding protein [Magnetospirillum
          gryphiswaldense MSR-1]
          Length = 104

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 67/92 (72%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TITR+ L +++ +E GLSR +S+  +  +  E+ ++  +GEA+KISSF +F V+ KG R+
Sbjct: 5  TITRAQLSEAVYQEVGLSRNESSDLLEAVLEEVAEALAQGEAVKISSFGSFAVRSKGQRI 64

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +EV I PRRV+VF+ S +LKK+I D
Sbjct: 65 GRNPKTGEEVPILPRRVLVFRPSQLLKKKIND 96


>gi|23014673|ref|ZP_00054478.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magnetotacticum MS-1]
          Length = 106

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 68/95 (71%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KTITR+ L +++ +E GLSR +S   +  + +EI  +  +G+A+KISSF +F V+ KG R
Sbjct: 4  KTITRAQLSEAVYQEVGLSRNESADLLEAVLDEISGALAKGDAVKISSFGSFSVRSKGQR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          +GRN +T +EV I PRRV+VF+ S +LKK+I D +
Sbjct: 64 IGRNPKTGEEVPITPRRVLVFRPSQLLKKKINDGV 98


>gi|170750364|ref|YP_001756624.1| histone family protein DNA-binding protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|226709734|sp|B1LZ99|IHFA_METRJ RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|170656886|gb|ACB25941.1| histone family protein DNA-binding protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 106

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 71/104 (68%), Gaps = 1/104 (0%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL +++  + GLSR +S   V T+ +EIC     GE +K+SSF +F V+ KG R
Sbjct: 4   KTVTRADLSEAVYHQVGLSRTESAALVETVLSEICSCLASGETVKLSSFGSFVVRSKGKR 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           VGRN +T  EV I+PR+V+VFK S++LK +I + + G   + DD
Sbjct: 64  VGRNPKTGVEVAIEPRQVMVFKPSNVLKAKI-NGLNGAGEHDDD 106


>gi|310815851|ref|YP_003963815.1| Histone-like DNA-binding protein (IHF) [Ketogulonicigenium
          vulgare Y25]
 gi|308754586|gb|ADO42515.1| Histone-like DNA-binding protein (IHF) [Ketogulonicigenium
          vulgare Y25]
          Length = 99

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 66/91 (72%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++  + GLSR DS   V T+   I D+ V GE++KISSF TF V++K +R
Sbjct: 4  KTLTRMDLAEAVHNKVGLSRNDSATLVETVLQHISDALVAGESVKISSFGTFSVREKSAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          VGRN +T  EV I+PRRV+ F++S ++K+R+
Sbjct: 64 VGRNPKTGIEVPINPRRVLTFRSSHLMKERV 94


>gi|254469379|ref|ZP_05082784.1| integration host factor, alpha subunit [Pseudovibrio sp. JE062]
 gi|211961214|gb|EEA96409.1| integration host factor, alpha subunit [Pseudovibrio sp. JE062]
          Length = 103

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 68/96 (70%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          S T+TR+DL +++ ++ GLSR +S   V  +  EI  S   GE++K+SSF +F V+ KG 
Sbjct: 3  SHTVTRADLCEAVYQKVGLSRTESAELVEQVLAEISASLENGESVKLSSFGSFVVRSKGE 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          R+GRN +T +EV I PRRV+VFK S++LK+RI D +
Sbjct: 63 RIGRNPKTGEEVPISPRRVMVFKPSNVLKQRINDAL 98


>gi|254510042|ref|ZP_05122109.1| integration host factor, alpha subunit [Rhodobacteraceae
          bacterium KLH11]
 gi|221533753|gb|EEE36741.1| integration host factor, alpha subunit [Rhodobacteraceae
          bacterium KLH11]
          Length = 100

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 66/91 (72%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++ +E GLSR +S + V ++ N + D+ VRGE +KISSF TF V+ K +R
Sbjct: 4  KTLTRMDLSEAVFREVGLSRNESAQLVESVLNHMSDALVRGEQVKISSFGTFSVRDKTAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +GRN +T +EV I PRRV+ F+ S ++K R+
Sbjct: 64 IGRNPKTGEEVPIQPRRVLTFRPSHLMKDRV 94


>gi|255263450|ref|ZP_05342792.1| integration host factor, alpha subunit [Thalassiobium sp. R2A62]
 gi|255105785|gb|EET48459.1| integration host factor, alpha subunit [Thalassiobium sp. R2A62]
          Length = 100

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 65/91 (71%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++  E GLSR DS + V ++   + D+ V+GE +KISSF TF V++K +R
Sbjct: 4  KTLTRMDLSEAVFNEVGLSRNDSAQLVESVLGHMSDALVKGEQVKISSFGTFAVREKAAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          VGRN +T +EV I PRRV+ F+ S ++K R+
Sbjct: 64 VGRNPKTGEEVPIHPRRVLTFRPSHLMKDRV 94


>gi|154253364|ref|YP_001414188.1| integration host factor subunit alpha [Parvibaculum
          lavamentivorans DS-1]
 gi|154157314|gb|ABS64531.1| integration host factor, alpha subunit [Parvibaculum
          lavamentivorans DS-1]
          Length = 105

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 66/93 (70%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M +T+TR+ L +++ +E GLSR +S   V  +  EI D   RG+ +K+SSF +F V++KG
Sbjct: 1  MGETVTRAQLSEAVYQEVGLSRNESAELVELVLAEISDCLARGDTVKLSSFGSFSVRKKG 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R+GRN +T +EV I PRRV+VF+ S +LK+RI
Sbjct: 61 GRMGRNPKTGEEVPIKPRRVLVFRPSHVLKERI 93


>gi|83942553|ref|ZP_00955014.1| integration host factor, alpha subunit [Sulfitobacter sp. EE-36]
 gi|83953774|ref|ZP_00962495.1| integration host factor, alpha subunit [Sulfitobacter sp.
          NAS-14.1]
 gi|83841719|gb|EAP80888.1| integration host factor, alpha subunit [Sulfitobacter sp.
          NAS-14.1]
 gi|83846646|gb|EAP84522.1| integration host factor, alpha subunit [Sulfitobacter sp. EE-36]
          Length = 100

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 66/93 (70%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++ +E GLSR +S + V  +   + D+ V+GE +KISSF TF V+ K +R
Sbjct: 4  KTLTRMDLSEAVFREVGLSRNESAQLVEAVLEHMSDALVKGEQVKISSFGTFSVRDKSAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          VGRN +T +EV I+PRRV+ F+ S ++K R+ D
Sbjct: 64 VGRNPKTGEEVPINPRRVLTFRPSHLMKDRVAD 96


>gi|163851479|ref|YP_001639522.1| histone family protein DNA-binding protein [Methylobacterium
          extorquens PA1]
 gi|218530287|ref|YP_002421103.1| histone family protein DNA-binding protein [Methylobacterium
          chloromethanicum CM4]
 gi|240138644|ref|YP_002963116.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Methylobacterium extorquens AM1]
 gi|254561242|ref|YP_003068337.1| integration host factor [Methylobacterium extorquens DM4]
 gi|226709732|sp|A9W4E5|IHFA_METEP RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|254803518|sp|B7KYG6|IHFA_METC4 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|163663084|gb|ABY30451.1| histone family protein DNA-binding protein [Methylobacterium
          extorquens PA1]
 gi|218522590|gb|ACK83175.1| histone family protein DNA-binding protein [Methylobacterium
          chloromethanicum CM4]
 gi|240008613|gb|ACS39839.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Methylobacterium extorquens AM1]
 gi|254268520|emb|CAX24477.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Methylobacterium extorquens DM4]
          Length = 108

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 66/91 (72%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR+DL +++ ++ GLSR +S   V T+  EIC     GE +K+SSF +F V+ KG R
Sbjct: 4  KTVTRADLSEAVYQQVGLSRAESAALVETVLAEICTCLSSGETVKLSSFGSFVVRSKGKR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +GRN +T  EV+I+PR+V+VFK S++LK RI
Sbjct: 64 IGRNPKTGVEVEIEPRQVMVFKPSNVLKARI 94


>gi|294677449|ref|YP_003578064.1| integration host factor subunit alpha [Rhodobacter capsulatus SB
          1003]
 gi|294476269|gb|ADE85657.1| integration host factor, alpha subunit [Rhodobacter capsulatus SB
          1003]
          Length = 100

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 66/93 (70%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++ +E GLSR +S + V T+   + D+ VRGE +KISSF TF V+ K SR
Sbjct: 4  KTLTRMDLSEAVFREVGLSRNESAQLVETVLQHMSDALVRGETVKISSFGTFSVRDKTSR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +GRN +T +EV I PRRV+ F+ S ++K R+ +
Sbjct: 64 MGRNPKTGEEVPISPRRVLSFRPSHLMKDRVAE 96


>gi|163735834|ref|ZP_02143263.1| integration host factor, alpha subunit [Roseobacter litoralis Och
          149]
 gi|161390920|gb|EDQ15260.1| integration host factor, alpha subunit [Roseobacter litoralis Och
          149]
          Length = 100

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 66/93 (70%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++ +E GLSR +S + V ++   + D+ V GE +KISSF TF V+ K +R
Sbjct: 4  KTLTRMDLSEAVFREVGLSRNESAQLVESVLEHLSDALVSGEQVKISSFGTFSVRDKSAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          VGRN +T +EV I+PRRV+ F+ S ++K R+ D
Sbjct: 64 VGRNPKTGEEVPINPRRVLTFRPSHLMKDRVAD 96


>gi|400045|sp|P30787|IHFA_RHOCA RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|151944|gb|AAA26128.1| integration host factor [Rhodobacter capsulatus]
          Length = 100

 Score = 97.4 bits (241), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 66/93 (70%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++ +E GLSR +S + V T+   + D+ VRGE +KISSF TF V+ K SR
Sbjct: 4  KTLTRMDLSEAVFREVGLSRNESAQLVETVLQHMSDALVRGETVKISSFGTFSVRDKTSR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +GRN +T +EV I PRRV+ F+ S ++K R+ +
Sbjct: 64 MGRNPKTGEEVPISPRRVLSFRPSHLMKDRVAE 96


>gi|90419421|ref|ZP_01227331.1| integration host factor [Aurantimonas manganoxydans SI85-9A1]
 gi|90336358|gb|EAS50099.1| integration host factor [Aurantimonas manganoxydans SI85-9A1]
          Length = 123

 Score = 97.4 bits (241), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/93 (46%), Positives = 69/93 (74%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T+TR+DL +++ ++ GLSR +S + V  + +E+C +   GE++KISSF +F V++K  R
Sbjct: 5  RTLTRADLSEAVFRKIGLSRTESAQLVEMVLDEMCSTIASGESVKISSFGSFLVREKNER 64

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +GRN +T +EV I PRRV VFK S++LK RI++
Sbjct: 65 IGRNPKTGEEVPILPRRVAVFKPSNVLKDRIVE 97


>gi|84516338|ref|ZP_01003698.1| Histone-like DNA-binding protein (IHF) [Loktanella vestfoldensis
          SKA53]
 gi|84510034|gb|EAQ06491.1| Histone-like DNA-binding protein (IHF) [Loktanella vestfoldensis
          SKA53]
          Length = 100

 Score = 97.4 bits (241), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 62/91 (68%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++  E GLSR DS   V ++   + DS V G+ +KISSF TF V+ K +R
Sbjct: 4  KTLTRMDLAEAVHNEVGLSRNDSADLVESVLTHVSDSLVAGDTVKISSFGTFAVRDKAAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          VGRN +T +EV I PRRV+ F+ S ++K R+
Sbjct: 64 VGRNPKTGEEVPIHPRRVLTFRPSHLMKDRV 94


>gi|126736415|ref|ZP_01752157.1| integration host factor, alpha subunit [Roseobacter sp. CCS2]
 gi|126714236|gb|EBA11105.1| integration host factor, alpha subunit [Roseobacter sp. CCS2]
          Length = 100

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 62/91 (68%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL  ++  + GLSR DS   V ++ + + DS V GE +KISSF TF V+ K +R
Sbjct: 4  KTLTRMDLADAVHSQVGLSRNDSADLVESVLSHVSDSLVSGETVKISSFGTFSVRDKAAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          VGRN +T +EV I PRRV+ F+ S ++K R+
Sbjct: 64 VGRNPKTGEEVPIHPRRVLTFRPSHLMKDRV 94


>gi|260428384|ref|ZP_05782363.1| integration host factor, alpha subunit [Citreicella sp. SE45]
 gi|260422876|gb|EEX16127.1| integration host factor, alpha subunit [Citreicella sp. SE45]
          Length = 149

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/97 (46%), Positives = 65/97 (67%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR DL +++ +E GLSR +S   V T+   + D+ V GE +KISSF TF V+ K +R
Sbjct: 53  KTLTRMDLSEAVFREVGLSRNESAELVETVLQHMSDALVEGEQVKISSFGTFSVRDKAAR 112

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           VGRN +T +EV I PRRV+ F+ S  +K+R+    +G
Sbjct: 113 VGRNPKTGEEVPIQPRRVLTFRPSHQMKERVAAGNKG 149


>gi|126729742|ref|ZP_01745555.1| integration host factor, alpha subunit [Sagittula stellata E-37]
 gi|126709861|gb|EBA08914.1| integration host factor, alpha subunit [Sagittula stellata E-37]
          Length = 100

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 63/91 (69%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++ +E GLSR +S   V  +   + D+ V GE +KISSF TF V++K +R
Sbjct: 4  KTLTRMDLSEAVFREVGLSRNESAELVEAVLQHMSDALVEGEQVKISSFGTFSVREKAAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          VGRN +T +EV I PRRV+ F+ S ++K R+
Sbjct: 64 VGRNPKTGEEVPIQPRRVLTFRPSHLMKDRV 94


>gi|110680344|ref|YP_683351.1| integration host factor subunit alpha [Roseobacter denitrificans
           OCh 114]
 gi|109456460|gb|ABG32665.1| integration host factor, alpha subunit [Roseobacter denitrificans
           OCh 114]
          Length = 112

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/93 (46%), Positives = 66/93 (70%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR DL +++ +E GLSR +S + V ++   + D+ V GE +KISSF TF V+ K +R
Sbjct: 16  KTLTRMDLSEAVFREVGLSRNESAQLVESVLEHLSDALVNGEQVKISSFGTFSVRDKSAR 75

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           VGRN +T +EV I+PRRV+ F+ S ++K R+ +
Sbjct: 76  VGRNPKTGEEVPINPRRVLTFRPSHLMKDRVAN 108


>gi|83952159|ref|ZP_00960891.1| integration host factor, alpha subunit [Roseovarius nubinhibens
          ISM]
 gi|83837165|gb|EAP76462.1| integration host factor, alpha subunit [Roseovarius nubinhibens
          ISM]
          Length = 92

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 63/85 (74%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DL ++I +E GLSR DS + V ++ + + D+ VRGE +KISSF TF V+QK +R+GRN +
Sbjct: 2  DLSEAIFREVGLSRNDSAQLVESVLDHMSDALVRGEQVKISSFGTFSVRQKSARMGRNPK 61

Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93
          T  EV IDPRRV+ F+ S ++K+R+
Sbjct: 62 TGTEVPIDPRRVLTFRPSHLMKERV 86


>gi|83858237|ref|ZP_00951759.1| integration host factor, alpha subunit [Oceanicaulis alexandrii
          HTCC2633]
 gi|83853060|gb|EAP90912.1| integration host factor, alpha subunit [Oceanicaulis alexandrii
          HTCC2633]
          Length = 100

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 64/92 (69%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          S T+TR+DL  ++ +E GLSR +S   V  + + I D  V GE++K+SSF +F ++ K  
Sbjct: 3  SNTVTRADLSDAVHREVGLSRHESAELVEAVLDMISDKLVGGESVKLSSFGSFLLRDKTG 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RVGRN +T +EV I+PRRV+VFK S +LK R+
Sbjct: 63 RVGRNPKTGEEVPIEPRRVLVFKPSQVLKDRV 94


>gi|220924844|ref|YP_002500146.1| histone family protein DNA-binding protein [Methylobacterium
          nodulans ORS 2060]
 gi|219949451|gb|ACL59843.1| histone family protein DNA-binding protein [Methylobacterium
          nodulans ORS 2060]
          Length = 105

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 62/92 (67%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           KTITR+DL +++ +  GLSR +S   V T+ +EIC     GE +K+SSF +F V+ +G 
Sbjct: 3  GKTITRADLTEAVHQRVGLSRAESAALVETVLSEICTCLASGEGVKLSSFGSFVVRDRGK 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RVGRN  T  EV I PRRV+VFK S++LK  +
Sbjct: 63 RVGRNPTTRVEVAIAPRRVMVFKPSNLLKAHV 94


>gi|119384600|ref|YP_915656.1| integration host factor, alpha subunit [Paracoccus denitrificans
          PD1222]
 gi|166918513|sp|A1B366|IHFA_PARDP RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|119374367|gb|ABL69960.1| integration host factor, alpha subunit [Paracoccus denitrificans
          PD1222]
          Length = 102

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 63/90 (70%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR DL +++ +E GLSR +S + V ++   I D+ VRGE +KISSF TF V+ K  R+
Sbjct: 5  TLTRMDLAEAVFREVGLSRHESAQLVESVLGHISDALVRGEQVKISSFGTFSVRDKNERI 64

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +EV I PRRV+ F+ S ++K R+
Sbjct: 65 GRNPKTGEEVPITPRRVLSFRPSHLMKDRV 94


>gi|163793229|ref|ZP_02187205.1| Integration host factor, alpha subunit [alpha proteobacterium
          BAL199]
 gi|159181875|gb|EDP66387.1| Integration host factor, alpha subunit [alpha proteobacterium
          BAL199]
          Length = 106

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 64/90 (71%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+ L +S+ +E GLSR +S   V ++ +E+  +  RGE +KISSF +F V+QKG RV
Sbjct: 9  TVTRAQLSESVYEEVGLSRNESAELVESVLDEMIAALARGEMVKISSFGSFSVRQKGRRV 68

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  EV I PR+V+VF+ S +LK +I
Sbjct: 69 GRNPKTGDEVPILPRKVLVFRPSHVLKNQI 98


>gi|260575262|ref|ZP_05843262.1| integration host factor, alpha subunit [Rhodobacter sp. SW2]
 gi|259022522|gb|EEW25818.1| integration host factor, alpha subunit [Rhodobacter sp. SW2]
          Length = 100

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 62/91 (68%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++ +E GLSR DS + V  +   + D+ V GE +KISSF TF V+ K +R
Sbjct: 4  KTLTRMDLSEAVFREVGLSRNDSAQLVEAVLQHMSDALVGGETVKISSFGTFSVRDKSAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          VGRN +T  EV I PRRV+ F+ S ++K R+
Sbjct: 64 VGRNPKTGDEVPISPRRVMTFRPSHLMKDRV 94


>gi|300022815|ref|YP_003755426.1| integration host factor, subunit alpha [Hyphomicrobium
          denitrificans ATCC 51888]
 gi|299524636|gb|ADJ23105.1| integration host factor, alpha subunit [Hyphomicrobium
          denitrificans ATCC 51888]
          Length = 101

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 43/93 (46%), Positives = 64/93 (68%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          + KT+TR+DL +++  + GL R +S   V  +  EI  S   G+ +K+SSF +F ++QKG
Sbjct: 2  VGKTLTRADLAEAVVSKVGLPRNESQDLVERVLEEISGSLADGDPVKLSSFGSFGIRQKG 61

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RVGRN +T +EV I PRRV+VF+ S+I+K RI
Sbjct: 62 ERVGRNPKTGEEVPITPRRVLVFRPSNIMKDRI 94


>gi|114771803|ref|ZP_01449196.1| integration host factor, alpha subunit [alpha proteobacterium
          HTCC2255]
 gi|114547619|gb|EAU50510.1| integration host factor, alpha subunit [alpha proteobacterium
          HTCC2255]
          Length = 99

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 66/92 (71%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          ++T+TR DL +++ +E GLSR +S   V ++   I D+ VRGE +KISSF TF+++ K +
Sbjct: 3  NETLTRMDLAEAVFEEVGLSRNESADLVESVLQHISDALVRGENVKISSFGTFNIRDKNA 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R+GRN +T +EV I+PRRV+ F+ S  +K ++
Sbjct: 63 RIGRNPKTGEEVPINPRRVLSFRPSHTMKDKV 94


>gi|149914952|ref|ZP_01903481.1| integration host factor, alpha subunit [Roseobacter sp. AzwK-3b]
 gi|149811140|gb|EDM70977.1| integration host factor, alpha subunit [Roseobacter sp. AzwK-3b]
          Length = 92

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 62/87 (71%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DL +++ +E GLSR DS   V ++   + D+ VRGE +KISSF TF V++K +RVGRN +
Sbjct: 2  DLSEAVFREVGLSRNDSAELVESVLAHMSDALVRGEQVKISSFGTFSVREKSARVGRNPK 61

Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMD 95
          T +EV I+PRRV+ F+ S ++K R+ D
Sbjct: 62 TGEEVPINPRRVLTFRPSHLMKDRVSD 88


>gi|163741403|ref|ZP_02148794.1| integration host factor, alpha subunit [Phaeobacter gallaeciensis
          2.10]
 gi|161385137|gb|EDQ09515.1| integration host factor, alpha subunit [Phaeobacter gallaeciensis
          2.10]
          Length = 92

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 62/90 (68%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DL +++ +E GLSR +S + V +L   + D+ VRGE +KISSF TF V+ K +RVGRN +
Sbjct: 2  DLSEAVFREVGLSRNESAQLVESLLQHMSDALVRGEQVKISSFGTFSVRDKSARVGRNPK 61

Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          T +EV I PRRV+ F+ S ++K R+ D  R
Sbjct: 62 TGEEVPIQPRRVLTFRPSHLMKDRVADGNR 91


>gi|312114064|ref|YP_004011660.1| integration host factor, subunit alpha [Rhodomicrobium vannielii
          ATCC 17100]
 gi|311219193|gb|ADP70561.1| integration host factor, alpha subunit [Rhodomicrobium vannielii
          ATCC 17100]
          Length = 233

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 64/91 (70%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR+DL +++ ++ GL R ++   V  +  +I  +  RGE IK+SSF +F ++QK  R
Sbjct: 6  KTLTRADLAEAVFEKVGLPRNEAAELVELVLKQIVYALERGEPIKLSSFGSFGLRQKSER 65

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          VGRN +T + V I PRRV+VFKAS+I+K RI
Sbjct: 66 VGRNPKTGEIVPITPRRVIVFKASNIMKDRI 96


>gi|148556459|ref|YP_001264041.1| integration host factor subunit alpha [Sphingomonas wittichii
          RW1]
 gi|166918531|sp|A5VC87|IHFA_SPHWW RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|148501649|gb|ABQ69903.1| integration host factor, alpha subunit [Sphingomonas wittichii
          RW1]
          Length = 100

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 62/91 (68%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+DL + + +E GLSR DS   V  +   +C +  RGE +KIS F +F +++KG R+
Sbjct: 7  TLTRADLSEEVHREIGLSRADSAAVVEQVLEHMCLALARGENVKISGFGSFILREKGQRI 66

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  EV I PRRV+ F+AS +L+ RI+
Sbjct: 67 GRNPKTGVEVPIAPRRVLTFRASQMLRDRIV 97


>gi|87200378|ref|YP_497635.1| integration host factor, alpha subunit [Novosphingobium
          aromaticivorans DSM 12444]
 gi|87136059|gb|ABD26801.1| integration host factor, alpha subunit [Novosphingobium
          aromaticivorans DSM 12444]
          Length = 98

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 61/90 (67%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+DL +SI++  GLSR DS   V ++   +CD+   G+ +KIS F TF ++ K  R+
Sbjct: 6  TLTRADLAESINRRVGLSRADSLEMVESILQHMCDALADGQNVKISGFGTFLLRDKAERI 65

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  EV I PRRV+ F+AS +LK RI
Sbjct: 66 GRNPKTGIEVPITPRRVLSFRASQMLKDRI 95


>gi|326386988|ref|ZP_08208598.1| integration host factor, alpha subunit [Novosphingobium
          nitrogenifigens DSM 19370]
 gi|326208169|gb|EGD58976.1| integration host factor, alpha subunit [Novosphingobium
          nitrogenifigens DSM 19370]
          Length = 93

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 61/89 (68%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +TR+DL +SI++  GLSR +S   V  + +++CD+   GE +KIS F TF ++ K  R+G
Sbjct: 1  MTRADLAESINRRVGLSRAESLEMVEAILSQMCDALAEGENVKISGFGTFLLRDKAERIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  EV I PRRV+ F+AS +LK RI
Sbjct: 61 RNPKTGVEVPITPRRVLTFRASQMLKDRI 89


>gi|126726952|ref|ZP_01742791.1| Histone-like DNA-binding protein (IHF) [Rhodobacterales bacterium
          HTCC2150]
 gi|126703910|gb|EBA03004.1| Histone-like DNA-binding protein (IHF) [Rhodobacterales bacterium
          HTCC2150]
          Length = 100

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 63/91 (69%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL ++I  E GLSR +S   V ++   + D+ V GE +KISSF TF ++ K +R
Sbjct: 4  KTLTRVDLSEAIFNEVGLSRNESAALVQSVLQHMSDALVSGENVKISSFGTFSLRDKNAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          VGRN +T +EV I PRRV+ F+ S+++K R+
Sbjct: 64 VGRNPKTGEEVPISPRRVLTFRPSNLMKDRV 94


>gi|221639022|ref|YP_002525284.1| integration host factor subunit alpha [Rhodobacter sphaeroides
          KD131]
 gi|221159803|gb|ACM00783.1| Integration host factor subunit alpha [Rhodobacter sphaeroides
          KD131]
          Length = 101

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 63/91 (69%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++ +E GLSR +S + V ++   + D+   GE +KISSF TF V+ K +R
Sbjct: 5  KTLTRMDLSEAVFREVGLSRNESAQLVESVLQHVSDALASGETVKISSFGTFTVRDKSAR 64

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +GRN +T  EV I PRRV+ F+ S ++K+R+
Sbjct: 65 IGRNPKTGDEVPISPRRVLTFRPSHLMKERV 95


>gi|77463165|ref|YP_352669.1| integration host factor subunit alpha [Rhodobacter sphaeroides
          2.4.1]
 gi|126462037|ref|YP_001043151.1| integration host factor subunit alpha [Rhodobacter sphaeroides
          ATCC 17029]
 gi|146277950|ref|YP_001168109.1| integration host factor subunit alpha [Rhodobacter sphaeroides
          ATCC 17025]
 gi|332558039|ref|ZP_08412361.1| integration host factor subunit alpha [Rhodobacter sphaeroides
          WS8N]
 gi|123592159|sp|Q3J366|IHFA_RHOS4 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|166918520|sp|A3PJ63|IHFA_RHOS1 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|166918521|sp|A4WTU0|IHFA_RHOS5 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|77387583|gb|ABA78768.1| Histone-like DNA-binding protein (IHF) [Rhodobacter sphaeroides
          2.4.1]
 gi|126103701|gb|ABN76379.1| integration host factor, alpha subunit [Rhodobacter sphaeroides
          ATCC 17029]
 gi|145556191|gb|ABP70804.1| integration host factor, alpha subunit [Rhodobacter sphaeroides
          ATCC 17025]
 gi|332275751|gb|EGJ21066.1| integration host factor subunit alpha [Rhodobacter sphaeroides
          WS8N]
          Length = 100

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 63/91 (69%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++ +E GLSR +S + V ++   + D+   GE +KISSF TF V+ K +R
Sbjct: 4  KTLTRMDLSEAVFREVGLSRNESAQLVESVLQHVSDALASGETVKISSFGTFTVRDKSAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +GRN +T  EV I PRRV+ F+ S ++K+R+
Sbjct: 64 IGRNPKTGDEVPISPRRVLTFRPSHLMKERV 94


>gi|296445655|ref|ZP_06887610.1| histone family protein DNA-binding protein [Methylosinus
           trichosporium OB3b]
 gi|296256900|gb|EFH03972.1| histone family protein DNA-binding protein [Methylosinus
           trichosporium OB3b]
          Length = 131

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 63/93 (67%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           +S T+TR+DL  ++ +  GLSR +S  FV  + +EI  + V G+ +K+SSF +FH++ K 
Sbjct: 29  LSHTVTRADLADAVHQRIGLSRTESAEFVEMVLSEIFQAIVAGDDVKLSSFGSFHIRWKN 88

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            RVGRN +T     I  RRVV+FKAS++L+ RI
Sbjct: 89  ERVGRNPKTGAAAPISARRVVMFKASNVLRARI 121


>gi|304319842|ref|YP_003853485.1| integration host factor subunit alpha [Parvularcula bermudensis
          HTCC2503]
 gi|303298745|gb|ADM08344.1| integration host factor alpha subunit [Parvularcula bermudensis
          HTCC2503]
          Length = 112

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 65/99 (65%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+KT TR+DL  ++ +  GLSR++    + ++  +I      GE +K+SSF TF +++K 
Sbjct: 1  MTKTHTRADLCDTVYENVGLSRQECGELIESVLEKIAQHLEEGEQVKLSSFGTFQIREKN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           R+GRN +T ++V I PRRV+ F+AS +LK R+ D  +G
Sbjct: 61 ERIGRNPKTGEQVAITPRRVLTFRASHVLKDRVDDGHKG 99


>gi|217976838|ref|YP_002360985.1| integration host factor, alpha subunit [Methylocella silvestris
           BL2]
 gi|217502214|gb|ACK49623.1| integration host factor, alpha subunit [Methylocella silvestris
           BL2]
          Length = 112

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 62/91 (68%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+TR DL +S+ +  GLSRK+S   V  + NE+ D+   GE +K+SSF +F V+ K  R
Sbjct: 13  RTVTRVDLAESVYRCVGLSRKESAALVQMVLNELSDALAEGETVKLSSFGSFVVRSKSER 72

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           +GRN +T  EV I  RRV+VFK SS+LK R+
Sbjct: 73  IGRNPKTGIEVPITQRRVLVFKPSSVLKARV 103


>gi|222101973|ref|YP_002546563.1| integration host factor alpha-subunit protein [Agrobacterium
           radiobacter K84]
 gi|221728090|gb|ACM31099.1| integration host factor alpha-subunit protein [Agrobacterium
           radiobacter K84]
          Length = 117

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 65/99 (65%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+D+  SI ++ GLSR +S   V T+  EIC + +RGE + +SSFA F+V++K  R
Sbjct: 4   KTLTRADITHSIIRQIGLSRTESAELVDTILEEICSALIRGENVGLSSFAAFNVREKSRR 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
            GRN +T ++ +I  RRV+ F AS  +K +I     GRK
Sbjct: 64  PGRNPKTGEDYQIAARRVISFTASDAVKTQIQKAHVGRK 102


>gi|254454267|ref|ZP_05067704.1| integration host factor, alpha subunit [Octadecabacter antarcticus
           238]
 gi|198268673|gb|EDY92943.1| integration host factor, alpha subunit [Octadecabacter antarcticus
           238]
          Length = 100

 Score = 91.3 bits (225), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 65/97 (67%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR DL  ++ +E GLSR +S   V ++  ++ D+   G+++KISSF TF ++ K +R
Sbjct: 4   KTLTRMDLADAVHEEVGLSRNESADLVESVLTQMSDALAGGDSVKISSFGTFSIRDKAAR 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           +GRN +T +EV I PRRV+ F+ S ++K R+    +G
Sbjct: 64  IGRNPKTGEEVPITPRRVLSFRPSHLMKDRVAAGNKG 100


>gi|114570072|ref|YP_756752.1| integration host factor subunit alpha [Maricaulis maris MCS10]
 gi|122315995|sp|Q0APH3|IHFA_MARMM RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|114340534|gb|ABI65814.1| integration host factor, alpha subunit [Maricaulis maris MCS10]
          Length = 101

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 65/91 (71%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR+DL +S+ +E GLSR++S   V ++   + D+   G+++K+SSF +F ++ K  R
Sbjct: 4  KTLTRADLAESVYREVGLSRQESADLVQSVLAMVSDNLAAGQSVKLSSFGSFLLRDKRGR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          VGRN +T  EV ID RRV+VFK S +LK+R+
Sbjct: 64 VGRNPKTGVEVPIDARRVLVFKPSQVLKERV 94


>gi|294083743|ref|YP_003550500.1| integration host factor subunit alpha [Candidatus
          Puniceispirillum marinum IMCC1322]
 gi|292663315|gb|ADE38416.1| integration host factor, alpha subunit [Candidatus
          Puniceispirillum marinum IMCC1322]
          Length = 97

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 60/93 (64%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSKT+TR+DL +++ +  GLSR +S+  V  +  EIC      E +K+SSF TF V+ K 
Sbjct: 1  MSKTLTRADLTEAVYRSVGLSRNESSDLVEAVIEEICSCLESNEEVKLSSFGTFSVQSKT 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RVGRN +T  E  I PRRV+ FK S ILK R+
Sbjct: 61 ERVGRNPKTGVEAVITPRRVLSFKPSHILKNRV 93


>gi|89054274|ref|YP_509725.1| integration host factor subunit alpha [Jannaschia sp. CCS1]
 gi|123094287|sp|Q28RG2|IHFA_JANSC RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|88863823|gb|ABD54700.1| integration host factor alpha subunit [Jannaschia sp. CCS1]
          Length = 100

 Score = 90.5 bits (223), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 63/91 (69%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++ +E GLSR +S+  V  +   + D+ V GE +K+SSF TF V+ K +R
Sbjct: 4  KTLTRMDLSEAVFREVGLSRNESSELVERVLQLMSDALVDGEQVKVSSFGTFSVRSKTAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          VGRN +T +EV I PRRV+ F+ S ++K R+
Sbjct: 64 VGRNPKTGEEVPISPRRVLTFRPSHLMKDRV 94


>gi|86138658|ref|ZP_01057231.1| integration host factor, alpha subunit [Roseobacter sp. MED193]
 gi|85824718|gb|EAQ44920.1| integration host factor, alpha subunit [Roseobacter sp. MED193]
          Length = 92

 Score = 90.5 bits (223), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 62/90 (68%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DL +++ +E GLSR +S + V ++   + D+ V+GE +KISSF TF V+ K +R+GRN +
Sbjct: 2  DLSEAVFREVGLSRNESAQLVESMLQHMSDALVQGEQVKISSFGTFSVRDKSARIGRNPK 61

Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          T +EV I PRRV+ F+ S ++K R+ D  R
Sbjct: 62 TGEEVPIQPRRVLTFRPSHLMKDRVADGNR 91


>gi|254501752|ref|ZP_05113903.1| DNA-binding protein HU [Labrenzia alexandrii DFL-11]
 gi|222437823|gb|EEE44502.1| DNA-binding protein HU [Labrenzia alexandrii DFL-11]
          Length = 83

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 59/82 (71%)

Query: 18 FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDP 77
           GLSR +S+  V  + +EI D  V GE++K+SSF +F V+ KG R+GRN +T +EV I P
Sbjct: 1  MGLSRTESSELVERVLSEISDCLVTGESVKLSSFGSFVVRSKGERIGRNPKTGEEVPISP 60

Query: 78 RRVVVFKASSILKKRIMDDMRG 99
          RRV+VFK S++LK+RI D + G
Sbjct: 61 RRVMVFKPSNVLKQRINDALTG 82


>gi|149186061|ref|ZP_01864375.1| integration host factor alpha-subunit [Erythrobacter sp. SD-21]
 gi|148830092|gb|EDL48529.1| integration host factor alpha-subunit [Erythrobacter sp. SD-21]
          Length = 102

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 63/90 (70%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+DL ++I+++ GLSR +S   V  +  ++ D+  RGE +KIS F +F ++ K  RV
Sbjct: 9  TLTRADLAETINRKMGLSRAESLDLVEEILGKMSDALARGENVKISGFGSFVLRDKKERV 68

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  EV I PRRV+ F+AS +LK+RI
Sbjct: 69 GRNPKTGVEVPITPRRVMTFRASQLLKERI 98


>gi|254461470|ref|ZP_05074886.1| integration host factor, alpha subunit [Rhodobacterales bacterium
          HTCC2083]
 gi|206678059|gb|EDZ42546.1| integration host factor, alpha subunit [Rhodobacteraceae
          bacterium HTCC2083]
          Length = 92

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 58/85 (68%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DL +++ +E GLSR +S   V  +   + D+ V GE +KISSF TF V+ K +RVGRN +
Sbjct: 2  DLSEAVFREVGLSRNESAELVENILTHLSDALVEGEQVKISSFGTFSVRDKAARVGRNPK 61

Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93
          T QEV I+PRRV+ F+ S ++K R+
Sbjct: 62 TGQEVPINPRRVLTFRPSHLMKDRV 86


>gi|114762844|ref|ZP_01442276.1| integration host factor, alpha subunit [Pelagibaca bermudensis
          HTCC2601]
 gi|114544454|gb|EAU47461.1| integration host factor, alpha subunit [Roseovarius sp. HTCC2601]
          Length = 92

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 61/87 (70%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DL +++ +E GLSR +S   V ++   + D+ VRGE +KISSF TF V+ K +RVGRN +
Sbjct: 2  DLSEAVFREVGLSRNESAELVESVLQHMSDALVRGEQVKISSFGTFSVRDKAARVGRNPK 61

Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMD 95
          T +EV I PRRV+ F+ S ++K+++ +
Sbjct: 62 TGEEVPIQPRRVLTFRPSHLMKEQVAE 88


>gi|222102284|ref|YP_002546874.1| integration host factor, alpha subunit [Agrobacterium radiobacter
           K84]
 gi|221728401|gb|ACM31410.1| integration host factor, alpha subunit [Agrobacterium radiobacter
           K84]
          Length = 114

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 63/100 (63%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+DL  ++ ++ GLSR +S+  V  +  EI D+ VRGE I +SSFA+  V  K  R
Sbjct: 4   KTVTRADLAYAVFQKIGLSRTESSDLVEVVLGEIGDALVRGEPIGLSSFASLQVNAKTHR 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
            GRN +T +EV I  RRVV F AS ++K RI    + RK 
Sbjct: 64  PGRNPRTGEEVLISARRVVKFTASDVMKSRIQKAHKTRKA 103


>gi|94495938|ref|ZP_01302517.1| integration host factor, alpha subunit [Sphingomonas sp. SKA58]
 gi|94424630|gb|EAT09652.1| integration host factor, alpha subunit [Sphingomonas sp. SKA58]
          Length = 96

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 63/90 (70%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+DL +S+++  GLSR ++   V ++ + + D+  RGE +KISSF TF ++ K  R+
Sbjct: 6  TLTRADLAESLNRHVGLSRAEAAALVESILDHMSDALERGENVKISSFGTFVLRDKTQRM 65

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  EV I+PRRV+ F+AS  ++ R+
Sbjct: 66 GRNPKTGVEVPIEPRRVLTFRASQTMRDRV 95


>gi|182680278|ref|YP_001834424.1| integration host factor, alpha subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636161|gb|ACB96935.1| integration host factor, alpha subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 125

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 65/92 (70%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S+T+TR +L +++ +  GLSRK+S   V  + +E+ D+ V+GE +K+SSF +F ++ K  
Sbjct: 24  SQTLTRVNLAEAVYRSVGLSRKESAALVQMVLSELSDTLVKGETVKLSSFGSFIIRSKAE 83

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R+GRN +T  EV I  RRV+VFK S++LK ++
Sbjct: 84  RIGRNPKTGIEVPITQRRVLVFKPSNVLKAKV 115


>gi|296282450|ref|ZP_06860448.1| integration host factor subunit alpha [Citromicrobium
          bathyomarinum JL354]
          Length = 100

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 61/92 (66%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+DL ++I+++ G SR +S   V ++   +CDS   GE +KIS F +F ++ K  RV
Sbjct: 7  TLTRADLAETINRKLGFSRAESLALVESILAHMCDSLKDGENVKISGFGSFVLRDKKERV 66

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T  EV I PRRV+ F+AS  L+ RI D
Sbjct: 67 GRNPKTGVEVPITPRRVMTFRASQTLRDRIAD 98


>gi|163746487|ref|ZP_02153845.1| integration host factor, alpha subunit [Oceanibulbus indolifex
          HEL-45]
 gi|161380372|gb|EDQ04783.1| integration host factor, alpha subunit [Oceanibulbus indolifex
          HEL-45]
          Length = 92

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 60/87 (68%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DL +++ +E GLSR +S + V  +   + D+ V GE +KISSF TF V+ K +RVGRN +
Sbjct: 2  DLSEAVFREVGLSRNESAQLVEAVLEHMSDALVEGEQVKISSFGTFSVRDKTARVGRNPK 61

Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMD 95
          T +EV I+PRRV+ F+ S ++K R+ +
Sbjct: 62 TGEEVPINPRRVLTFRPSHLMKDRVAE 88


>gi|258542774|ref|YP_003188207.1| integration host factor DNA-binding subunit alpha [Acetobacter
           pasteurianus IFO 3283-01]
 gi|329114627|ref|ZP_08243386.1| Integration host factor subunit alpha [Acetobacter pomorum DM001]
 gi|256633852|dbj|BAH99827.1| integration host factor DNA-binding alpha subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636911|dbj|BAI02880.1| integration host factor DNA-binding alpha subunit [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639964|dbj|BAI05926.1| integration host factor DNA-binding alpha subunit [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256643020|dbj|BAI08975.1| integration host factor DNA-binding alpha subunit [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256646075|dbj|BAI12023.1| integration host factor DNA-binding alpha subunit [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256649128|dbj|BAI15069.1| integration host factor DNA-binding alpha subunit [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256652115|dbj|BAI18049.1| integration host factor DNA-binding alpha subunit [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256655172|dbj|BAI21099.1| integration host factor DNA-binding alpha subunit [Acetobacter
           pasteurianus IFO 3283-12]
 gi|326696107|gb|EGE47789.1| Integration host factor subunit alpha [Acetobacter pomorum DM001]
          Length = 106

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+TR+ L++ I ++ GLSRK+S+  +  +   + D+  RGE++KIS F TF V++KG R
Sbjct: 2   ETVTRASLIEQIYQQVGLSRKESSVLLEDVLETVMDALERGESVKISGFGTFSVRKKGQR 61

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
            GRN +T +EV I PR V+VF+ S +L+  +  +    +   D
Sbjct: 62  SGRNPKTGEEVPILPRSVLVFRPSQLLRAEVNHETLDAEAEHD 104


>gi|114327679|ref|YP_744836.1| integration host factor subunit alpha [Granulibacter bethesdensis
          CGDNIH1]
 gi|114315853|gb|ABI61913.1| integration host factor alpha-subunit [Granulibacter bethesdensis
          CGDNIH1]
          Length = 107

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 58/87 (66%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+ L ++I  + GLSR DS   + T+   +  +   GE++KIS F TF V+QKG R+
Sbjct: 3  TVTRAHLAETIYTQVGLSRNDSALLLETVLERMSSALEAGESVKISGFGTFSVRQKGRRI 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T  EV I PRRV+VF+ S +LK
Sbjct: 63 GRNPKTGIEVPIMPRRVLVFRPSQVLK 89


>gi|58038600|ref|YP_190564.1| integration host factor alpha-subunit [Gluconobacter oxydans
          621H]
 gi|58001014|gb|AAW59908.1| Integration host factor alpha-subunit [Gluconobacter oxydans
          621H]
          Length = 108

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 60/90 (66%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR++LV+ +    GLSR DS+  + +L   I D    GE++K+S F TF V+QKG R+
Sbjct: 3  TVTRANLVEHLYSRVGLSRHDSSMILESLLGVISDRLEAGESVKLSGFGTFSVRQKGERI 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  EV I PR V+VF+ S +L+ R+
Sbjct: 63 GRNPKTGVEVPILPRAVLVFRPSQLLRDRM 92


>gi|56552018|ref|YP_162857.1| integration host factor subunit alpha [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241761906|ref|ZP_04759991.1| integration host factor, alpha subunit [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260752446|ref|YP_003225339.1| integration host factor, subunit alpha [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|5834289|gb|AAD53893.1|AF176314_3 HimA [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543592|gb|AAV89746.1| integration host factor, alpha subunit [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241373586|gb|EER63158.1| integration host factor, alpha subunit [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258551809|gb|ACV74755.1| integration host factor, alpha subunit [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 113

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 60/91 (65%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+TR+D+   +  E GLSR DS + +  +   I D+  +GE +KIS F +F ++ K  RV
Sbjct: 20  TLTRADITDMLYHEVGLSRADSAKMIEQMLGHITDALKKGENVKISGFGSFILRDKNERV 79

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN +T  EV I PRRV+ F+AS ++++RI+
Sbjct: 80  GRNPKTGIEVPIAPRRVLTFRASQLMRQRII 110


>gi|148259288|ref|YP_001233415.1| integration host factor, alpha subunit [Acidiphilium cryptum
          JF-5]
 gi|326402443|ref|YP_004282524.1| integration host factor alpha subunit [Acidiphilium multivorum
          AIU301]
 gi|146400969|gb|ABQ29496.1| integration host factor, alpha subunit [Acidiphilium cryptum
          JF-5]
 gi|325049304|dbj|BAJ79642.1| integration host factor alpha subunit [Acidiphilium multivorum
          AIU301]
          Length = 104

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 58/87 (66%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+ L +SI    GLSR +S   +  + + +  +   GE+IKIS F TF V+QKG R+
Sbjct: 3  TLTRAGLAESIYAAVGLSRNESAALLEAVLDRMKQALAEGESIKISGFGTFSVRQKGRRI 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T +EV I PRRV+VF+ S IL+
Sbjct: 63 GRNPKTGREVPILPRRVLVFRPSQILR 89


>gi|197105121|ref|YP_002130498.1| integration host factor alpha-subunit [Phenylobacterium zucineum
          HLK1]
 gi|226709738|sp|B4RB18|IHFA_PHEZH RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|196478541|gb|ACG78069.1| integration host factor alpha-subunit [Phenylobacterium zucineum
          HLK1]
          Length = 100

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 60/90 (66%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+DL +++ ++ GL+R+D    V  +   +C +  RGE +K+S F  F V+ K +R+
Sbjct: 5  TVTRADLCEAVHEQVGLTRQDCAELVERVLELMCQALERGEQVKLSGFGVFQVRSKRARM 64

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +   I+PRRV+ F+AS ++K R+
Sbjct: 65 GRNPKTGEPAAIEPRRVIGFRASQVMKARV 94


>gi|14194876|sp|Q9RNZ5|IHFA_ZYMMO RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
          Length = 100

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 60/91 (65%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+D+   +  E GLSR DS + +  +   I D+  +GE +KIS F +F ++ K  RV
Sbjct: 7  TLTRADITDMLYHEVGLSRADSAKMIEQMLGHITDALKKGENVKISGFGSFILRDKNERV 66

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  EV I PRRV+ F+AS ++++RI+
Sbjct: 67 GRNPKTGIEVPIAPRRVLTFRASQLMRQRII 97


>gi|85709150|ref|ZP_01040216.1| integration host factor alpha-subunit [Erythrobacter sp. NAP1]
 gi|85690684|gb|EAQ30687.1| integration host factor alpha-subunit [Erythrobacter sp. NAP1]
          Length = 99

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 63/90 (70%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+DL ++I+++ GLSR +S   V ++  ++ D+   GE +KIS F +F ++ K  R+
Sbjct: 6  TLTRADLAETINRKMGLSRAESLDLVESILTKMSDALANGENVKISGFGSFVLRDKNERI 65

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  EV I PRRV+ F+AS +LK++I
Sbjct: 66 GRNPKTGVEVPITPRRVLTFRASQLLKEQI 95


>gi|182677372|ref|YP_001831518.1| histone family protein DNA-binding protein [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182633255|gb|ACB94029.1| histone family protein DNA-binding protein [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 171

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/93 (44%), Positives = 60/93 (64%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+TR DL  S+    G+SRKD+ R VT + +EI ++ VRGE ++++SF  F ++ K  R+
Sbjct: 71  TVTRKDLASSVYDCIGISRKDADRLVTEVLSEITEALVRGENVRLASFGNFEIRAKTQRI 130

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           GRN +T     I PRRV+ FKAS +L  R+  D
Sbjct: 131 GRNPRTGVAAVIPPRRVLKFKASKVLLDRLNGD 163


>gi|329850595|ref|ZP_08265440.1| integration host factor subunit alpha [Asticcacaulis biprosthecum
          C19]
 gi|328840910|gb|EGF90481.1| integration host factor subunit alpha [Asticcacaulis biprosthecum
          C19]
          Length = 100

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 60/92 (65%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          S+T+TR++L + +  E GL R++    V    + + D+  RGE +K+S F  F V++K +
Sbjct: 3  SQTLTRAELFEDVHNELGLPRQECAAIVERTLDLVVDALERGEMVKLSGFGVFQVREKNA 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RVGRN +T +   IDPR+V+ F+AS I+K R+
Sbjct: 63 RVGRNPKTGKPAAIDPRKVISFRASQIMKARV 94


>gi|85374549|ref|YP_458611.1| integration host factor subunit alpha [Erythrobacter litoralis
          HTCC2594]
 gi|123099506|sp|Q2N927|IHFA_ERYLH RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|84787632|gb|ABC63814.1| integration host factor alpha-subunit [Erythrobacter litoralis
          HTCC2594]
          Length = 100

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 61/90 (67%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+DL ++I+++ G SR +S   V  +   +C +  +GE +KIS F +F ++ K  R+
Sbjct: 7  TLTRADLAEAINRKMGFSRAESLDMVEAILEHMCGALRKGENVKISGFGSFVLRDKKERI 66

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  EV I PRRV+ F+AS +L++RI
Sbjct: 67 GRNPKTGVEVPITPRRVMTFRASQLLRERI 96


>gi|326408797|gb|ADZ65862.1| Integration host factor, alpha subunit [Brucella melitensis M28]
 gi|326538516|gb|ADZ86731.1| integration host factor, alpha subunit [Brucella melitensis M5-90]
          Length = 79

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 55/74 (74%)

Query: 28  FVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASS 87
            V  + +E+CD+ V GE +K+SSFATF V+ K  R+GRN +T +EV I PRRV+ FKAS+
Sbjct: 1   MVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERIGRNPKTGEEVPILPRRVMTFKASN 60

Query: 88  ILKKRIMDDMRGRK 101
           +LK+RI+ + + R+
Sbjct: 61  VLKQRILQEHQKRQ 74


>gi|254419022|ref|ZP_05032746.1| integration host factor, alpha subunit [Brevundimonas sp. BAL3]
 gi|196185199|gb|EDX80175.1| integration host factor, alpha subunit [Brevundimonas sp. BAL3]
          Length = 103

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 63/93 (67%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T+TR+DL +++ +E GLSR++ +  V      I +S  +G+ +K+S F  F V++K +R
Sbjct: 6  QTVTRADLCEAVHEEVGLSRQECSALVERTLELIVESLEQGDTVKLSGFGVFQVREKRAR 65

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +GRN +T +   I+PRRV+ F+AS I+K R+ D
Sbjct: 66 MGRNPKTGEPAAINPRRVISFRASQIMKSRVHD 98


>gi|307294086|ref|ZP_07573930.1| integration host factor, alpha subunit [Sphingobium
          chlorophenolicum L-1]
 gi|306880237|gb|EFN11454.1| integration host factor, alpha subunit [Sphingobium
          chlorophenolicum L-1]
          Length = 98

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 61/90 (67%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+DL +S+++  GLSR ++   + ++   +  +  RGE +KISSF TF ++ K  R+
Sbjct: 6  TLTRADLAESVNRHIGLSRAEAATLIESILEHMSAALERGENVKISSFGTFVLRDKTQRM 65

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  EV I+PRRV+ F+AS  ++ R+
Sbjct: 66 GRNPKTGVEVPIEPRRVLTFRASQTMRDRV 95


>gi|294013226|ref|YP_003546686.1| integration host factor alpha subunit [Sphingobium japonicum
          UT26S]
 gi|292676556|dbj|BAI98074.1| integration host factor alpha subunit [Sphingobium japonicum
          UT26S]
          Length = 98

 Score = 84.3 bits (207), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 61/90 (67%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+DL +S+++  GLSR ++   + ++   +  +  RGE +KISSF TF ++ K  R+
Sbjct: 6  TLTRADLAESVNRHIGLSRAEAATLIESILEHMSAALERGENVKISSFGTFVLRDKTQRM 65

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  EV I+PRRV+ F+AS  ++ R+
Sbjct: 66 GRNPKTGVEVPIEPRRVLTFRASQTMRDRV 95


>gi|315499913|ref|YP_004088716.1| histone family protein DNA-binding protein [Asticcacaulis
          excentricus CB 48]
 gi|315417925|gb|ADU14565.1| histone family protein DNA-binding protein [Asticcacaulis
          excentricus CB 48]
          Length = 100

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 60/92 (65%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + T+TR++L +++  E GL R++    V    + + DS  +GE +K+S F  F V++K +
Sbjct: 3  ATTLTRAELFEAVHNELGLPRQECAALVERTLDLVIDSLEKGETVKLSGFGVFQVREKNA 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RVGRN +T +   IDPR+V+ F+AS I+K R+
Sbjct: 63 RVGRNPKTGKPAAIDPRKVISFRASQIMKARV 94


>gi|296534243|ref|ZP_06896727.1| integration host factor [Roseomonas cervicalis ATCC 49957]
 gi|296265430|gb|EFH11571.1| integration host factor [Roseomonas cervicalis ATCC 49957]
          Length = 102

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 59/96 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TITR+ L ++I  + GLSR +S   +  +   I  +   G  +KIS+F TF V+QKG RV
Sbjct: 3  TITRAQLAEAIYAQVGLSRNESAALLEDVLERISAALEAGRPVKISAFGTFSVRQKGMRV 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T  EV I PRRV+ F+ S +LK R+  +  G
Sbjct: 63 GRNPKTGIEVPIMPRRVLSFRPSQVLKARLNGEPVG 98


>gi|302383009|ref|YP_003818832.1| integration host factor, subunit alpha [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193637|gb|ADL01209.1| integration host factor, alpha subunit [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 102

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 63/97 (64%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+TR+DL +++ +E GLSR++ +  V      I +S  +G+ +K+S F  F V++K +R
Sbjct: 5   QTLTRADLCEAVLEEVGLSRQECSSLVERTLELIVESLEQGQTVKLSGFGVFQVREKSAR 64

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           +GRN +T +   I+PRRV+ F+AS I+K R+     G
Sbjct: 65  MGRNPKTGEPAAINPRRVISFRASQIMKSRVHGATNG 101


>gi|254438095|ref|ZP_05051589.1| integration host factor, alpha subunit [Octadecabacter
          antarcticus 307]
 gi|198253541|gb|EDY77855.1| integration host factor, alpha subunit [Octadecabacter
          antarcticus 307]
          Length = 92

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 61/91 (67%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DL  ++ +E GLSR +S+  V ++  ++ D+   G+++KISSF TF ++ K +R+GRN +
Sbjct: 2  DLADAVHEEVGLSRNESSDLVESVLTQMSDALAGGDSVKISSFGTFSIRDKAARIGRNPK 61

Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          T +EV I PRRV+ F+ S ++K R+    +G
Sbjct: 62 TGEEVPITPRRVLSFRPSHLMKDRVAAGNKG 92


>gi|85858504|ref|YP_460706.1| DNA-binding protein HU [Syntrophus aciditrophicus SB]
 gi|85721595|gb|ABC76538.1| DNA-binding protein HU [Syntrophus aciditrophicus SB]
          Length = 91

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 62/91 (68%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ D+++ + ++ G S+KDS R V ++F+ I +S  RGE IKIS F  F VK+K SR G
Sbjct: 1  MTKIDIIQDVYEKLGFSKKDSARIVESVFDIIKESLGRGEKIKISGFGNFVVKEKKSRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT  E+ I  RRV+ FK+S +L+K + D
Sbjct: 61 RNPQTGDEISISARRVLTFKSSQVLRKALND 91


>gi|167646994|ref|YP_001684657.1| integration host factor subunit alpha [Caulobacter sp. K31]
 gi|189044696|sp|B0T0T0|IHFA_CAUSK RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|167349424|gb|ABZ72159.1| integration host factor, alpha subunit [Caulobacter sp. K31]
          Length = 100

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 61/90 (67%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+DL +++ +E GL+R+D    V    + + ++  +GE +K+S F  F V+ K +R+
Sbjct: 5  TLTRADLCEAVHEEVGLTRQDCAGLVERTLDLVAEALEKGETVKLSGFGVFQVRDKRARM 64

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +  +I+PRRV+ F+AS ++K RI
Sbjct: 65 GRNPKTGEPAEIEPRRVIGFRASQVMKARI 94


>gi|295689080|ref|YP_003592773.1| integration host factor subunit alpha [Caulobacter segnis ATCC
          21756]
 gi|295430983|gb|ADG10155.1| integration host factor, alpha subunit [Caulobacter segnis ATCC
          21756]
          Length = 100

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 61/90 (67%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+DL +++ +E GL+R+D    V    + + ++  +GE +K+S F  F V+ K +R+
Sbjct: 5  TLTRADLCEAVHEEVGLTRQDCAGLVERTLDLVAEALEKGETVKLSGFGVFQVRSKRARM 64

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +  +I+PRRV+ F+AS ++K RI
Sbjct: 65 GRNPKTGEPAEIEPRRVIGFRASQVMKARI 94


>gi|16125619|ref|NP_420183.1| integration host factor alpha-subunit [Caulobacter crescentus
          CB15]
 gi|221234370|ref|YP_002516806.1| integration host factor subunit alpha [Caulobacter crescentus
          NA1000]
 gi|81782690|sp|Q9A8I3|IHFA_CAUCR RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|254803513|sp|B8H546|IHFA_CAUCN RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|13422723|gb|AAK23351.1| integration host factor alpha-subunit [Caulobacter crescentus
          CB15]
 gi|220963542|gb|ACL94898.1| integration host factor alpha-subunit [Caulobacter crescentus
          NA1000]
          Length = 100

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 61/90 (67%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+DL +++ +E GL+R+D    V    + + ++  +GE +K+S F  F V+ K +R+
Sbjct: 5  TLTRADLCEAVHEEVGLTRQDCAGLVERTLDLVAEALEQGETVKLSGFGVFQVRAKRARM 64

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +  +I+PRRV+ F+AS ++K RI
Sbjct: 65 GRNPKTGEPAEIEPRRVIGFRASQVMKARI 94


>gi|153004748|ref|YP_001379073.1| integration host factor subunit alpha [Anaeromyxobacter sp.
          Fw109-5]
 gi|166918497|sp|A7HBJ3|IHFA_ANADF RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|152028321|gb|ABS26089.1| integration host factor, alpha subunit [Anaeromyxobacter sp.
          Fw109-5]
          Length = 99

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 65/94 (69%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+++S+ ++ G S+K++   V  +F+ I ++  RGE IKIS F  F V++K SRVG
Sbjct: 1  MTKADIIESVYEKVGFSKKEAAEIVEMVFDTIKETLERGEKIKISGFGNFIVREKKSRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI-MDDM 97
          RN QT +E++I  RRV+ F+ S +LK  + + DM
Sbjct: 61 RNPQTGEEIEISARRVLTFRPSQVLKNALNLSDM 94


>gi|237747673|ref|ZP_04578153.1| integration host factor subunit alpha [Oxalobacter formigenes
           OXCC13]
 gi|229379035|gb|EEO29126.1| integration host factor subunit alpha [Oxalobacter formigenes
           OXCC13]
          Length = 129

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 58/90 (64%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L + + ++ GL+++++   V T F EIC +  RGEA+K+S F  F ++ K  R 
Sbjct: 32  TLTKAELTELLYEQVGLNKREAKEMVETFFEEICGALERGEAVKLSGFGNFQLRDKPQRP 91

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN +T +E+ I  RRVV F AS  LK  +
Sbjct: 92  GRNPRTGEEIPITARRVVTFHASQKLKSMV 121


>gi|291287116|ref|YP_003503932.1| histone family protein DNA-binding protein [Denitrovibrio
          acetiphilus DSM 12809]
 gi|290884276|gb|ADD67976.1| histone family protein DNA-binding protein [Denitrovibrio
          acetiphilus DSM 12809]
          Length = 91

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 59/91 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I ++ GL++KD  + V  LFNE+ D  +    +KIS F  F VK++G R+G
Sbjct: 1  MTKADIVELIHEKLGLTKKDIAKVVDELFNEVRDQILGKNNVKISGFGNFEVKKRGRRIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T  E  I+PR VVVF+ S I K  + D
Sbjct: 61 RNPKTGVETVIEPRTVVVFRPSQIFKDEVND 91


>gi|254293751|ref|YP_003059774.1| histone family protein DNA-binding protein [Hirschia baltica ATCC
          49814]
 gi|254042282|gb|ACT59077.1| histone family protein DNA-binding protein [Hirschia baltica ATCC
          49814]
          Length = 103

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 61/91 (67%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KTITR+D+V  +  E GL+R+DS+ ++  +   +C+  V   ++K++ F  F V++K +R
Sbjct: 4  KTITRADIVDKLVSEVGLTRQDSSDYLERVLEMVCEELVADNSVKLARFGNFVVRRKNAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          VGRN +T +E  I  RRVV FK S ++++R+
Sbjct: 64 VGRNPKTGKEAPITARRVVTFKPSPLMRRRV 94


>gi|103486903|ref|YP_616464.1| integration host factor, alpha subunit [Sphingopyxis alaskensis
          RB2256]
 gi|122985051|sp|Q1GT91|IHFA_SPHAL RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|98976980|gb|ABF53131.1| integration host factor, alpha subunit [Sphingopyxis alaskensis
          RB2256]
          Length = 97

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 60/92 (65%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + T+TR+D+   I+++ GLSR +S   V ++ + + D+   G+ +KIS F TF ++ K  
Sbjct: 3  AGTLTRADIASRINQQIGLSRNESAAIVESILDHMSDALAAGQNVKISGFGTFVLRDKAQ 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R+GRN +T  EV I PRRV+ F+AS  ++ R+
Sbjct: 63 RIGRNPKTGVEVPILPRRVMTFRASQSMRARV 94


>gi|323137735|ref|ZP_08072811.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC
           49242]
 gi|322397032|gb|EFX99557.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC
           49242]
          Length = 128

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 55/92 (59%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            +T+TR+DL  +I K  GL R DS  +V  +  EI D  V  E +K+SSF  F V+ K  
Sbjct: 22  GRTVTRADLADAIHKRLGLPRADSANYVEMVLEEIFDRIVSREDVKLSSFGAFLVRSKKE 81

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R+GRN +T    KI  R VV FK S+IL+ RI
Sbjct: 82  RLGRNPKTGAGAKITARLVVTFKPSNILRSRI 113


>gi|115375494|ref|ZP_01462754.1| integration host factor, alpha subunit [Stigmatella aurantiaca
          DW4/3-1]
 gi|310821386|ref|YP_003953744.1| integration host factor subunit alpha [Stigmatella aurantiaca
          DW4/3-1]
 gi|115367537|gb|EAU66512.1| integration host factor, alpha subunit [Stigmatella aurantiaca
          DW4/3-1]
 gi|309394458|gb|ADO71917.1| Integration host factor subunit alpha [Stigmatella aurantiaca
          DW4/3-1]
          Length = 134

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 60/86 (69%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+++ + ++ G S+K+S   V  +F+ + ++  RG+ IKIS F  F V+QK +RVG
Sbjct: 1  MTKADIIEGVYEKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I  RRV+ F+ S +LK
Sbjct: 61 RNPQTGKEIEISARRVLTFRPSQVLK 86


>gi|108759809|ref|YP_631785.1| integration host factor subunit alpha [Myxococcus xanthus DK
          1622]
 gi|14194862|sp|Q9K4Q3|IHFA_MYXXA RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123247723|sp|Q1D6D8|IHFA_MYXXD RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|9663772|emb|CAC01236.1| integration host factor alpha subunit [Myxococcus xanthus]
 gi|108463689|gb|ABF88874.1| integration host factor, alpha subunit [Myxococcus xanthus DK
          1622]
          Length = 129

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 60/86 (69%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+++ + ++ G S+K+S   V  +F+ + ++  RG+ IKIS F  F V+QK +RVG
Sbjct: 1  MTKADIIEGVYEKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I  RRV+ F+ S +LK
Sbjct: 61 RNPQTGKEIEISARRVLTFRPSQVLK 86


>gi|189424977|ref|YP_001952154.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
 gi|189421236|gb|ACD95634.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
          Length = 92

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 60/89 (67%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +L K + +E G+ +K++  +V  L + I ++  +GE +KIS F  F V++K +R G
Sbjct: 1  MTKIELAKQLHQELGIRQKEAADYVEALLDLIKETLEKGENVKISGFGIFEVREKNARRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I+PRRV+ FK S+ILK+ I
Sbjct: 61 RNPQTGEAITIEPRRVLTFKPSAILKESI 89


>gi|197122315|ref|YP_002134266.1| integration host factor subunit alpha [Anaeromyxobacter sp. K]
 gi|220917097|ref|YP_002492401.1| integration host factor, alpha subunit [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|226707369|sp|B4UAP1|IHFA_ANASK RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|254803509|sp|B8J836|IHFA_ANAD2 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|196172164|gb|ACG73137.1| integration host factor, alpha subunit [Anaeromyxobacter sp. K]
 gi|219954951|gb|ACL65335.1| integration host factor, alpha subunit [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 113

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 60/86 (69%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+++S+ ++ G S+K++   V  +F+ I ++  RGE IKIS F  F V+ K SRVG
Sbjct: 1  MTKADIIESVYEKVGFSKKEAAEIVEMVFDTIKETLERGEKIKISGFGNFIVRDKKSRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I  RRV+ F+ S +LK
Sbjct: 61 RNPQTGEEIEISARRVLTFRPSQVLK 86


>gi|301166555|emb|CBW26131.1| integration host factor alpha-subunit (IHF-alpha) [Bacteriovorax
          marinus SJ]
          Length = 137

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 59/90 (65%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++T++D+V+ + KE G S+K++   V  +F  I D+  RGE +KIS F  F ++ K +RV
Sbjct: 2  SLTKADIVERVYKEAGFSKKEAADLVDLVFKVIKDTLARGEKVKISGFGNFSIRDKATRV 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QT   ++I  RRV+ FK S +LK+ +
Sbjct: 62 GRNPQTGSAMEISARRVLTFKPSQVLKEDV 91


>gi|86158392|ref|YP_465177.1| integration host factor subunit alpha [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|123723043|sp|Q2IJA7|IHFA_ANADE RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|85774903|gb|ABC81740.1| integration host factor, alpha subunit [Anaeromyxobacter
          dehalogenans 2CP-C]
          Length = 113

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 60/86 (69%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+++S+ ++ G S+K++   V  +F+ I ++  RGE IKIS F  F V+ K SRVG
Sbjct: 1  MTKADIIESVYEKVGFSKKEAAEIVEMVFDTIKETLERGEKIKISGFGNFIVRDKKSRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I  RRV+ F+ S +LK
Sbjct: 61 RNPQTGEEIEISARRVLTFRPSQVLK 86


>gi|94265743|ref|ZP_01289479.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|94271834|ref|ZP_01292021.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|93450327|gb|EAT01564.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|93453718|gb|EAT04096.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
          Length = 94

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 62/93 (66%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+++LV+ I ++  LSR+++   V    +   D+  RGE + +S F  F+V+QK +R 
Sbjct: 2  TLTKAELVRRIHQQHDLSREEAVAVVDNFLDIAKDTLGRGEDLLLSGFGKFNVRQKKARR 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN QT +E+ + PR+V+ FKAS IL++RI  D
Sbjct: 62 GRNPQTGEELTLSPRKVITFKASGILRQRINGD 94


>gi|258544542|ref|ZP_05704776.1| integration host factor subunit alpha [Cardiobacterium hominis
          ATCC 15826]
 gi|258520173|gb|EEV89032.1| integration host factor subunit alpha [Cardiobacterium hominis
          ATCC 15826]
          Length = 98

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 56/90 (62%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++D+V+SI  + G+ R D+ + V  LF E+      GEA+K+S F  F ++ K  R 
Sbjct: 2  TLTKADIVESIIAQIGIPRPDARQMVDDLFEEVRACLATGEAVKLSGFGNFELRDKKQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV FKA   LK R+
Sbjct: 62 GRNPKTGEEIPITARRVVSFKAGQKLKARV 91


>gi|71906960|ref|YP_284547.1| integration host factor, alpha subunit [Dechloromonas aromatica
          RCB]
 gi|71846581|gb|AAZ46077.1| Integration host factor, alpha subunit [Dechloromonas aromatica
          RCB]
          Length = 113

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 54/92 (58%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          S TIT++DL + +S E G + +++   V   F E+ D   RGE IK++ F  F ++ K  
Sbjct: 8  SMTITKADLAEHLSNEIGFNNREAKEVVEAFFKELSDCLERGEEIKLAGFGVFSMRNKPE 67

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R GRN +T +E+ I  RRVV F AS  LK  +
Sbjct: 68 RPGRNPKTGEEIPITARRVVTFHASGCLKSAV 99


>gi|237745476|ref|ZP_04575956.1| integration host factor subunit alpha [Oxalobacter formigenes
           HOxBLS]
 gi|229376827|gb|EEO26918.1| integration host factor subunit alpha [Oxalobacter formigenes
           HOxBLS]
          Length = 125

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 57/90 (63%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L + + ++ GL+++++   V T F EIC +  RGE +K+S F  F ++ K  R 
Sbjct: 32  TLTKAELTELLYEQVGLNKREAKEMVETFFEEICCALERGEMVKLSGFGNFQLRDKPQRP 91

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN +T +E+ I  RRVV F AS  LK  +
Sbjct: 92  GRNPRTGEEIPITARRVVTFHASQKLKSMV 121


>gi|117923410|ref|YP_864027.1| integration host factor, subunit alpha [Magnetococcus sp. MC-1]
 gi|117607166|gb|ABK42621.1| integration host factor, alpha subunit [Magnetococcus sp. MC-1]
          Length = 96

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 60/90 (66%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++D+V+++ +  GLS+K+S   V ++F  I +    G+ +KIS F  F +++K  R 
Sbjct: 2  TMTKADIVQTVYQRLGLSKKESADIVESVFELIRNQLENGDPVKISGFGNFTMREKNPRQ 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +EV+I  RRVV FKAS IL  ++
Sbjct: 62 GRNPKTGEEVEISARRVVTFKASQILLNKV 91


>gi|332975691|gb|EGK12576.1| integration host factor subunit alpha [Psychrobacter sp.
          1501(2011)]
          Length = 105

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 59/91 (64%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T+T++D++  +  +FG +R+     V + F+EI D+ V G  +K+S F  F +K K SR
Sbjct: 6  ETLTKADIIDHLVSKFGFTRQQGRMLVDSFFDEIYDNLVEGRDVKLSGFGNFILKDKKSR 65

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN +T +EV+I  RRVV FKA   L++++
Sbjct: 66 PGRNPKTGEEVQISARRVVTFKAGQKLRRQV 96


>gi|126215723|sp|Q47GF4|IHFA1_DECAR RecName: Full=Integration host factor subunit alpha 1;
          Short=IHF-alpha 1
          Length = 105

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT++DL + +S E G + +++   V   F E+ D   RGE IK++ F  F ++ K  R 
Sbjct: 2  TITKADLAEHLSNEIGFNNREAKEVVEAFFKELSDCLERGEEIKLAGFGVFSMRNKPERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F AS  LK  +
Sbjct: 62 GRNPKTGEEIPITARRVVTFHASGCLKSAV 91


>gi|162148845|ref|YP_001603306.1| integration host factor alpha-subunit [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209545407|ref|YP_002277636.1| integration host factor subunit alpha [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|161787422|emb|CAP57017.1| putative integration host factor alpha-subunit [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209533084|gb|ACI53021.1| integration host factor, alpha subunit [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 105

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+ L + I  + GLSR +S   +  +   +      G  +KIS F TF V+QKG R 
Sbjct: 3  TVTRASLAEHIYSQVGLSRNESADLLEHVLERVAKELESGNTVKISGFGTFSVRQKGRRT 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  EV I PR V+VF+ S +L+ R+
Sbjct: 63 GRNPKTGVEVPILPRSVLVFRPSQLLRARV 92


>gi|329889489|ref|ZP_08267832.1| integration host factor subunit alpha [Brevundimonas diminuta
          ATCC 11568]
 gi|328844790|gb|EGF94354.1| integration host factor subunit alpha [Brevundimonas diminuta
          ATCC 11568]
          Length = 91

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 57/86 (66%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          + +++ +E GLSR++ +  V    + I DS  +GE +K+S F  F V++K +R+GRN +T
Sbjct: 1  MCEAVHEEVGLSRQECSGLVERTLDLIVDSLEQGETVKLSGFGVFQVREKRARMGRNPKT 60

Query: 70 NQEVKIDPRRVVVFKASSILKKRIMD 95
           +   I+PRRV+ F+AS I+K R+ D
Sbjct: 61 GEPAAINPRRVISFRASQIMKSRVHD 86


>gi|296116566|ref|ZP_06835176.1| integration host factor, alpha subunit [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976778|gb|EFG83546.1| integration host factor, alpha subunit [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 105

 Score = 77.0 bits (188), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 1/103 (0%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+TR+ L + I  + GLSR +S   +  +  ++  +   G+ +KIS F TF V++KG R 
Sbjct: 3   TVTRATLAEQIYSQVGLSRHESADILEHVLEKVAHALEAGDTVKISGFGTFSVRKKGRRT 62

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN +T  EV I PR V+VF+ S +L+  +  D  G    +DD
Sbjct: 63  GRNPKTGVEVPILPRSVLVFRPSQLLRAHVNGDT-GHMNAEDD 104


>gi|148654111|ref|YP_001281204.1| histone family protein DNA-binding protein [Psychrobacter sp.
          PRwf-1]
 gi|148573195|gb|ABQ95254.1| histone family protein DNA-binding protein [Psychrobacter sp.
          PRwf-1]
          Length = 106

 Score = 77.0 bits (188), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 61/92 (66%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          ++T+T++D++  +  +FG +R+     V + F+EI D+ V G+ +K+S F  F +K K S
Sbjct: 8  TQTLTKADIIDHLVVKFGFTRQQGRMLVDSFFDEIYDNLVGGKDVKLSGFGNFILKDKKS 67

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R GRN +T +EV+I  RRVV FKA   L++++
Sbjct: 68 RPGRNPKTGEEVEISARRVVTFKAGQKLRRQV 99


>gi|329895713|ref|ZP_08271117.1| Integration host factor alpha subunit [gamma proteobacterium
          IMCC3088]
 gi|328922189|gb|EGG29544.1| Integration host factor alpha subunit [gamma proteobacterium
          IMCC3088]
          Length = 99

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+SD+   + +E GL+++++   V   F EI  S    E +K+S F  F ++ KG R 
Sbjct: 3  ALTKSDMADMLFEELGLNKREAKEIVEMFFEEIRASLESNEQVKLSGFGNFELRDKGERP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I PRRVV FK    LK R+
Sbjct: 63 GRNPKTGEEIPISPRRVVTFKPGQKLKARV 92


>gi|300311300|ref|YP_003775392.1| integration host factor alpha-subunit [Herbaspirillum seropedicae
          SmR1]
 gi|300074085|gb|ADJ63484.1| integration host factor alpha-subunit protein [Herbaspirillum
          seropedicae SmR1]
          Length = 104

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 60/90 (66%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+++L + + ++ GL+++++   V T F+EI ++  RGEA+K+S F  F ++ K  R 
Sbjct: 3  TLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F AS  LK+ +
Sbjct: 63 GRNPKTGEEIPITARRVVTFHASQKLKEMV 92


>gi|297568841|ref|YP_003690185.1| histone family protein DNA-binding protein [Desulfurivibrio
          alkaliphilus AHT2]
 gi|296924756|gb|ADH85566.1| histone family protein DNA-binding protein [Desulfurivibrio
          alkaliphilus AHT2]
          Length = 95

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 56/90 (62%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++DL++ + +   LS+  +T  V    +   DS   GE + +S F  F VKQK SR 
Sbjct: 2  TLTKADLIQEVYQRHNLSKSQATEVVEIFLSVAKDSLQEGEDLLLSGFGKFSVKQKNSRR 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QT +E+ + PRRV+ FK S +L++R+
Sbjct: 62 GRNPQTGEELMLAPRRVITFKPSGLLRQRV 91


>gi|152980190|ref|YP_001353183.1| integration host factor alpha-subunit [Janthinobacterium sp.
           Marseille]
 gi|151280267|gb|ABR88677.1| integration host factor alpha-subunit [Janthinobacterium sp.
           Marseille]
          Length = 165

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 60/92 (65%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L + + ++ GL+++++   V T F+EI ++  RGE++K+S F  F ++ K  R 
Sbjct: 64  TLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGESVKLSGFGNFQLRDKPQRP 123

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           GRN +T +E+ I  RRVV F AS  LK  + D
Sbjct: 124 GRNPKTGEEIPITARRVVTFHASQKLKGMVED 155


>gi|257455759|ref|ZP_05620985.1| integration host factor subunit alpha [Enhydrobacter aerosaccus
           SK60]
 gi|257446773|gb|EEV21790.1| integration host factor subunit alpha [Enhydrobacter aerosaccus
           SK60]
          Length = 105

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 58/96 (60%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+T+ +++  + +  G++R+DS  FV   F+E+ ++  +G  +K+S F  F +K K  
Sbjct: 7   GKTLTKLEMINHLMENLGMTRQDSRAFVENFFSELSETLTKGHQVKLSGFGNFEIKDKSQ 66

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           R GRN +T + V +  RRVV FKA   +++ I D +
Sbjct: 67  RPGRNPKTGEMVHVTARRVVTFKAGQKMRRSIEDKL 102


>gi|330994019|ref|ZP_08317949.1| Integration host factor subunit alpha [Gluconacetobacter sp.
           SXCC-1]
 gi|329758965|gb|EGG75479.1| Integration host factor subunit alpha [Gluconacetobacter sp.
           SXCC-1]
          Length = 109

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 57/103 (55%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+TR+ L + I  + GLSR +S   +  +   +  +   G+ +KIS F TF V+QKG R 
Sbjct: 5   TVTRATLAEQIYDQVGLSRHESADILEDILERMVRTLETGDTLKISGFGTFSVRQKGQRT 64

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN +T  EV I PR V+VF+ S +L+  +     G    + D
Sbjct: 65  GRNPKTGVEVPILPRSVLVFRPSQLLRAHVNGQAGGENLPEGD 107


>gi|329907561|ref|ZP_08274684.1| Integration host factor alpha subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546938|gb|EGF31844.1| Integration host factor alpha subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 137

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 60/93 (64%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L + + ++ GL+++++   V T F+EI D+  RGE +K+S F  F ++ K  R 
Sbjct: 36  TLTKAELAELLFEQVGLNKREAKDMVETFFDEIRDALERGELVKLSGFGNFQLRDKPQRP 95

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           GRN +T +E+ I  RRVV F AS  LK  + ++
Sbjct: 96  GRNPKTGEEIPITARRVVTFHASQKLKSMVENE 128


>gi|146328691|ref|YP_001209944.1| integration host factor, alpha subunit [Dichelobacter nodosus
          VCS1703A]
 gi|189044699|sp|A5EXT4|IHFA_DICNV RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|146232161|gb|ABQ13139.1| integration host factor, alpha subunit [Dichelobacter nodosus
          VCS1703A]
          Length = 98

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 55/92 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++D+V++I  + G+ R ++   V  LF EI      GE +K+S F  F ++ K  R 
Sbjct: 2  TLTKADIVEAIIAQIGIPRPEAREIVDDLFEEIRSCLATGEPVKLSGFGNFELRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +E+ I  RRVV FKA   LK R+ +
Sbjct: 62 GRNPKTGEEIPITARRVVSFKAGQKLKARVAE 93


>gi|78486002|ref|YP_391927.1| integration host factor, alpha subunit [Thiomicrospira crunogena
          XCL-2]
 gi|123755188|sp|Q31F20|IHFA_THICR RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|78364288|gb|ABB42253.1| Histone-like DNA-binding protein [Thiomicrospira crunogena XCL-2]
          Length = 97

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 58/90 (64%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ +++S +FG ++++S   V   ++E+ +  V+GE IK+S F  F +K K +R 
Sbjct: 2  ALTKADIAETLSDKFGFNKRESKELVEQFYDEMSEVLVKGEQIKLSGFGNFELKDKSARP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++V I  RRVV FK    L+ +I
Sbjct: 62 GRNPRTGEDVPISARRVVTFKPGQKLRAQI 91


>gi|323136968|ref|ZP_08072048.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC
           49242]
 gi|322397729|gb|EFY00251.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC
           49242]
          Length = 179

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 61/97 (62%), Gaps = 7/97 (7%)

Query: 4   TITRSDLVKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           T+TR+ L +++   +G    LSR ++ + +   F EI D+ +RGE++K+ SF TF+V+ K
Sbjct: 80  TLTRAALREAV---YGCCPSLSRAEARKILDATFEEISDALLRGESVKLRSFGTFNVRSK 136

Query: 60  GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
             RVGRN +T  E  I PRRV+ FKAS +L   +  D
Sbjct: 137 RERVGRNPKTGVEATITPRRVLTFKASPVLVAHVNGD 173


>gi|134095000|ref|YP_001100075.1| integration host factor subunit alpha [Herminiimonas
           arsenicoxydans]
 gi|133738903|emb|CAL61950.1| Integration host factor subunit alpha (IHF-alpha) [Herminiimonas
           arsenicoxydans]
          Length = 151

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 59/90 (65%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L + + ++ GL+++++   V T F+EI ++  RGEA+K+S F  F ++ K  R 
Sbjct: 50  TLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRP 109

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN +T +E+ I  RRVV F AS  LK  +
Sbjct: 110 GRNPKTGEEIPITARRVVTFHASQKLKSMV 139


>gi|262277180|ref|ZP_06054973.1| integration host factor subunit alpha (IHF-alpha) [alpha
          proteobacterium HIMB114]
 gi|262224283|gb|EEY74742.1| integration host factor subunit alpha (IHF-alpha) [alpha
          proteobacterium HIMB114]
          Length = 95

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 55/93 (59%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS  +TR DL     KE G+S+ +  +FV  +F  I  +   G  +K+S F +F VK K 
Sbjct: 1  MSNNVTRQDLYDLTYKELGISKNECIKFVDLVFESILKNFEEGNKVKVSLFGSFDVKDKK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +R+GRN +T +E +I  RRVV FK S  L K+I
Sbjct: 61 ARIGRNPKTKEEKEISSRRVVTFKPSKFLSKKI 93


>gi|95930290|ref|ZP_01313028.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM
          684]
 gi|95133753|gb|EAT15414.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM
          684]
          Length = 93

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 59/89 (66%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV+++  + G S+K+S   V T+F  + D+   G+ IKI+ F  F VKQK +R G
Sbjct: 1  MTKADLVENVYFKTGFSKKESAEIVETVFELMKDTLEDGDKIKIAGFGNFVVKQKATRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I  R+++ FK S +LK  I
Sbjct: 61 RNPQTGEEIEISSRKILTFKPSQVLKTAI 89


>gi|77164655|ref|YP_343180.1| integration host factor subunit alpha [Nitrosococcus oceani ATCC
          19707]
 gi|254434600|ref|ZP_05048108.1| integration host factor, alpha subunit [Nitrosococcus oceani
          AFC27]
 gi|123594551|sp|Q3JBZ6|IHFA_NITOC RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|76882969|gb|ABA57650.1| Integration host factor, alpha subunit [Nitrosococcus oceani ATCC
          19707]
 gi|207090933|gb|EDZ68204.1| integration host factor, alpha subunit [Nitrosococcus oceani
          AFC27]
          Length = 99

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 57/90 (63%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ +++ +E GL+++++   V   F +I  +  +GEA+K+S F  F ++ KG R 
Sbjct: 2  ALTKADMTETLYQELGLNKREAKEIVEMFFEDIRCALEQGEAVKLSGFGNFELRDKGERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEEIPITARRVVTFRPGQKLKARV 91


>gi|319943681|ref|ZP_08017962.1| integration host factor subunit alpha [Lautropia mirabilis ATCC
           51599]
 gi|319742914|gb|EFV95320.1| integration host factor subunit alpha [Lautropia mirabilis ATCC
           51599]
          Length = 141

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 57/95 (60%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T++ L   + +  GL+++++   V T F EI  + +RGE++K+S F  F ++ K  R 
Sbjct: 29  TLTKAALADMLFERVGLNKREAKDMVETFFEEISAALIRGESVKLSGFGNFQLRDKQQRP 88

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           GRN +T +E+ I  RRVV F AS  LK +I    R
Sbjct: 89  GRNPKTGEEIPISARRVVTFHASQKLKAQIEAPHR 123


>gi|189424947|ref|YP_001952124.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
 gi|189421206|gb|ACD95604.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
          Length = 93

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 57/92 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I ++ GLS+K+S   V  +F  + ++   GE IKI+ F  F VKQK  R G
Sbjct: 1  MTKADIVERIHQKIGLSKKESAEMVEMVFGIMKNTLESGEKIKIAGFGNFVVKQKADRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN QT   + I  RR++ FK S +LK  I D+
Sbjct: 61 RNPQTGDAITISARRILTFKPSQVLKSGINDE 92


>gi|117924608|ref|YP_865225.1| integration host factor, subunit alpha [Magnetococcus sp. MC-1]
 gi|117926119|ref|YP_866736.1| integration host factor, subunit alpha [Magnetococcus sp. MC-1]
 gi|117608364|gb|ABK43819.1| integration host factor, alpha subunit [Magnetococcus sp. MC-1]
 gi|117609875|gb|ABK45330.1| integration host factor, alpha subunit [Magnetococcus sp. MC-1]
          Length = 96

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 57/90 (63%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++D+V+++    GLS+K+S   V ++F  I      GE +KIS F  F ++ K  R 
Sbjct: 2  TMTKADIVQTVYHRLGLSKKESADVVESVFELIRSQLESGEPVKISGFGGFSIRDKKPRQ 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++V+I  RRVV FKAS IL  R+
Sbjct: 62 GRNPKTGEDVEISARRVVTFKASQILLDRV 91


>gi|238653880|emb|CAV30823.1| Integration host factor, alpha subunit [magnetite-containing
          magnetic vibrio]
          Length = 104

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 57/92 (61%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +K +TR  L ++I KE GLSR +S   + T    I +S V G+ +KISSF  F V+ K  
Sbjct: 3  NKCLTRLQLSEAIYKEVGLSRTESAEILQTALKIISESLVSGDYVKISSFGCFSVRAKKK 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R+GRN +T ++  I PR ++ F+ SS LK RI
Sbjct: 63 RMGRNPKTGEQAIILPRNILTFRPSSTLKLRI 94


>gi|292493201|ref|YP_003528640.1| integration host factor, subunit alpha [Nitrosococcus halophilus
          Nc4]
 gi|291581796|gb|ADE16253.1| integration host factor, alpha subunit [Nitrosococcus halophilus
          Nc4]
          Length = 100

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 56/90 (62%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ +++ +E GL+++++   V   F +I  +  RGE +K+S F  F ++ KG R 
Sbjct: 2  ALTKADMTETLYQELGLNKREAKEIVEMFFEDIRCALERGETVKLSGFGNFELRDKGERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEEIPITARRVVTFRPGQKLKARV 91


>gi|87122323|ref|ZP_01078205.1| Integration host factor alpha subunit [Marinomonas sp. MED121]
 gi|86162466|gb|EAQ63749.1| Integration host factor alpha subunit [Marinomonas sp. MED121]
          Length = 98

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 60/95 (63%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ +++  E GLS+KDS   V + F+ I ++ ++GE +K+S F  F V++K  R 
Sbjct: 3  ALTKADIAENLVDEVGLSKKDSKDLVESFFDVIRETLIQGEQVKLSGFGNFEVREKSQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +E+ I  R VV F+    LK ++ + M+
Sbjct: 63 GRNPKTGEEIPITARTVVTFRPGQKLKSKVENYMQ 97


>gi|319779416|ref|YP_004130329.1| Integration host factor alpha subunit [Taylorella equigenitalis
           MCE9]
 gi|317109440|gb|ADU92186.1| Integration host factor alpha subunit [Taylorella equigenitalis
           MCE9]
          Length = 124

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 58/92 (63%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +KT+T+++L + + +  GL+++++   V   FN+I D+   GE +K+S F  F V+ K +
Sbjct: 30  TKTLTKAELAEMLFESVGLNKREAKEIVDQFFNQIRDALANGEHVKLSGFGNFQVRDKAA 89

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I+ RRVV F AS  LK  +
Sbjct: 90  RPGRNPKTGEVIPIEARRVVTFHASQKLKNAV 121


>gi|42523141|ref|NP_968521.1| integration host factor, alpha subunit [Bdellovibrio
          bacteriovorus HD100]
 gi|39575346|emb|CAE79514.1| integration host factor, alpha subunit [Bdellovibrio
          bacteriovorus HD100]
          Length = 123

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 58/87 (66%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++D+V+++ ++ G S+K+++  V  +F+ +      GE +KIS F  F V+ K  R+
Sbjct: 13 TVTKADIVENVYQKIGFSKKEASELVELVFDTLKTVLQDGEKVKISGFGNFVVRGKNERI 72

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN QT +++KI  RRV+ F+ S +LK
Sbjct: 73 GRNPQTGEQIKISARRVLTFRPSQVLK 99


>gi|118580717|ref|YP_901967.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
 gi|118503427|gb|ABK99909.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
          Length = 97

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 56/89 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I ++ G S+K+S   V T+F+ I  +   GE IKI+ F  F VKQK  R G
Sbjct: 1  MTKADIVERIHQKIGFSKKESAEMVETVFSIIKSTLETGEKIKIAGFGNFVVKQKADRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I  RR++ FK S +LK  I
Sbjct: 61 RNPQTGETITIAARRILTFKPSQVLKNAI 89


>gi|291279581|ref|YP_003496416.1| integration host factor, subunit alpha [Deferribacter
          desulfuricans SSM1]
 gi|290754283|dbj|BAI80660.1| integration host factor, alpha subunit [Deferribacter
          desulfuricans SSM1]
          Length = 91

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 57/89 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I  + G+++KD    V  +F  + +  + G ++K+S F  F VK +G RVG
Sbjct: 1  MTKADIVEKIYNQLGITKKDIANVVDMVFTTMREEILSGNSVKVSGFGNFEVKVRGRRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +EV I PR VV FK S++ K+ +
Sbjct: 61 RNPKTGEEVIIPPRYVVSFKPSNLFKEEV 89


>gi|119945141|ref|YP_942821.1| integration host factor, alpha subunit [Psychromonas ingrahamii
          37]
 gi|166918519|sp|A1SUQ7|IHFA_PSYIN RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|119863745|gb|ABM03222.1| integration host factor, alpha subunit [Psychromonas ingrahamii
          37]
          Length = 100

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 58/94 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++   +S + GLS++++  FV + F EI  +   GEA+KIS F  F +K K  R 
Sbjct: 2  ALTKAEIAADLSVKIGLSKREAKEFVESFFEEIKATLENGEAVKISGFGGFELKDKSERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T +++ I  RRVV F+A   LK+ +  +M
Sbjct: 62 GRNPKTGEDIPIAARRVVTFRAGQKLKELVEKNM 95


>gi|289208103|ref|YP_003460169.1| integration host factor, subunit alpha [Thioalkalivibrio sp.
          K90mix]
 gi|288943734|gb|ADC71433.1| integration host factor, alpha subunit [Thioalkalivibrio sp.
          K90mix]
          Length = 99

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 56/90 (62%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL  ++++E GL+++++  FV   F E+  S   GE +K+S F  F ++ K  R 
Sbjct: 3  AVTKADLAATLNEELGLNKREAKEFVEMFFEEMRQSLEDGEGVKLSGFGNFILRDKNQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ +  RRVV F+    L++R+
Sbjct: 63 GRNPKTGEEIPVSARRVVTFRPGQKLRERV 92


>gi|189425415|ref|YP_001952592.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
 gi|189421674|gb|ACD96072.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
          Length = 94

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 58/89 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV+ I    GLSRKD+   + ++F+ + +S   GE IKIS F +F V +K +R G
Sbjct: 1  MTKTDLVEKIQASIGLSRKDAAVMLESVFSIMKESLEAGETIKISGFGSFVVSRKAARRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I+ R+V+ FK  S+L+  I
Sbjct: 61 RNPQTGEAITIEARKVLTFKPGSVLRDAI 89


>gi|29654618|ref|NP_820310.1| integration host factor subunit alpha [Coxiella burnetii RSA 493]
 gi|153207449|ref|ZP_01946149.1| integration host factor, alpha subunit [Coxiella burnetii 'MSU
          Goat Q177']
 gi|154706871|ref|YP_001424757.1| integration host factor subunit alpha [Coxiella burnetii Dugway
          5J108-111]
 gi|161831262|ref|YP_001597169.1| integration host factor subunit alpha [Coxiella burnetii RSA 331]
 gi|165924056|ref|ZP_02219888.1| integration host factor, alpha subunit [Coxiella burnetii RSA
          334]
 gi|212212299|ref|YP_002303235.1| integration host factor subunit alpha [Coxiella burnetii
          CbuG_Q212]
 gi|212218732|ref|YP_002305519.1| integration host factor subunit alpha [Coxiella burnetii
          CbuK_Q154]
 gi|81722530|sp|Q83C16|IHFA_COXBU RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|189044697|sp|A9KGB5|IHFA_COXBN RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|189044698|sp|A9N8J9|IHFA_COXBR RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226707371|sp|B6J7X5|IHFA_COXB1 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226707372|sp|B6IZG2|IHFA_COXB2 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|29541886|gb|AAO90824.1| integration host factor alpha-subunit [Coxiella burnetii RSA 493]
 gi|120576580|gb|EAX33204.1| integration host factor, alpha subunit [Coxiella burnetii 'MSU
          Goat Q177']
 gi|154356157|gb|ABS77619.1| integration host factor alpha-subunit [Coxiella burnetii Dugway
          5J108-111]
 gi|161763129|gb|ABX78771.1| integration host factor, alpha subunit [Coxiella burnetii RSA
          331]
 gi|165916488|gb|EDR35092.1| integration host factor, alpha subunit [Coxiella burnetii RSA
          334]
 gi|212010709|gb|ACJ18090.1| integration host factor alpha-subunit [Coxiella burnetii
          CbuG_Q212]
 gi|212012994|gb|ACJ20374.1| integration host factor alpha-subunit [Coxiella burnetii
          CbuK_Q154]
          Length = 103

 Score = 74.7 bits (182), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 58/95 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL + +    GL+++++   V   F EI  S  RGE +K+S F  F+++ KG R 
Sbjct: 2  ALTKADLSEHLFNVVGLNKREAKDLVELFFKEISLSLERGEPVKLSGFGNFNLRDKGERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +E+ I  RRVV F+A   LK R+  +++
Sbjct: 62 GRNPKTGEEIPITARRVVTFRAGHKLKSRVEKNVK 96


>gi|160900042|ref|YP_001565624.1| integration host factor subunit alpha [Delftia acidovorans SPH-1]
 gi|226707373|sp|A9C3C8|IHFA_DELAS RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|160365626|gb|ABX37239.1| integration host factor, alpha subunit [Delftia acidovorans SPH-1]
          Length = 110

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 56/98 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S  +T++ L   +  E GL++++S   V   F  I  S V GE +K+S F  F ++ K  
Sbjct: 10  SPALTKAQLADLLFDEIGLNKRESKEMVDAFFELISQSLVTGEDVKLSGFGNFQIRTKAP 69

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           R GRN +T + + I+ RRVV F ASS LK++I +   G
Sbjct: 70  RPGRNPRTGEAIPIEARRVVTFHASSKLKEQIQEGTTG 107


>gi|312126573|ref|YP_003991447.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311776592|gb|ADQ06078.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          hydrothermalis 108]
          Length = 92

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 61/92 (66%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++ +L+K++S++ GL++KDS + +  L   I ++  +GE I++  F +F V+Q+  R G
Sbjct: 1  MSKEELIKAMSQKSGLTKKDSEKALNALIESIQEALSKGEKIQLVGFGSFEVRQRAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN QT +E+ I   +V VFKA  +LK+ ++ D
Sbjct: 61 RNPQTKEEIIIPATKVPVFKAGKMLKRAVIAD 92


>gi|148264666|ref|YP_001231372.1| histone family protein DNA-binding protein [Geobacter
          uraniireducens Rf4]
 gi|146398166|gb|ABQ26799.1| histone family protein DNA-binding protein [Geobacter
          uraniireducens Rf4]
          Length = 92

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 58/89 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I ++ G S+K+S   V T+F+ I ++   G+ IKI+ F  F VK+K  R G
Sbjct: 1  MTKADIVERIYEKVGFSKKESAELVETVFDLIKNTLEDGDKIKIAGFGNFVVKEKADRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I  R+++ FK S +LK  I
Sbjct: 61 RNPQTGEEITISARKILTFKPSQVLKAAI 89


>gi|206889442|ref|YP_002249053.1| integration host factor alpha-subunit [Thermodesulfovibrio
          yellowstonii DSM 11347]
 gi|206741380|gb|ACI20437.1| integration host factor alpha-subunit [Thermodesulfovibrio
          yellowstonii DSM 11347]
          Length = 94

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 59/93 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  I +  GL R +  + V T+F  + ++    E +KIS F  F V++KGSR+G
Sbjct: 1  MTKADLVNFIFERVGLPRTEIHKIVETVFETMKEALQEEEVVKISGFGVFTVRRKGSRIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          RN +T Q V+I PR+VV F+ S  LK+ I  ++
Sbjct: 61 RNPKTMQIVEIKPRKVVTFRPSEQLKQSIQKNI 93


>gi|300114468|ref|YP_003761043.1| integration host factor subunit alpha [Nitrosococcus watsonii
          C-113]
 gi|299540405|gb|ADJ28722.1| integration host factor, alpha subunit [Nitrosococcus watsonii
          C-113]
          Length = 99

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 56/90 (62%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + + +E GL+++++   V   F +I  +  +GEA+K+S F  F ++ KG R 
Sbjct: 2  ALTKADMTEILYQELGLNKREAKEIVEMFFEDIRCALEQGEAVKLSGFGNFELRDKGERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEEIPITARRVVTFRPGQKLKARV 91


>gi|222056441|ref|YP_002538803.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32]
 gi|221565730|gb|ACM21702.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32]
          Length = 92

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 57/89 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I ++ G S+K+S   V T+F+ I  +   G+ IKI+ F  F VK+K  R G
Sbjct: 1  MTKADIVERIYEKVGFSKKESAELVETVFDLIKSTLEEGDKIKIAGFGNFVVKEKADRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I  R+++ FK S +LK  I
Sbjct: 61 RNPQTGEEITISARKILTFKPSQVLKAAI 89


>gi|209695216|ref|YP_002263145.1| integration host factor subunit alpha [Aliivibrio salmonicida
          LFI1238]
 gi|226707367|sp|B6EN06|IHFA_ALISL RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|208009168|emb|CAQ79416.1| integration host factor alpha-subunit (IHF-alpha) [Aliivibrio
          salmonicida LFI1238]
          Length = 98

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 56/92 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ ++ GLS++D+   V   F EI  +   GE +K+S F  F +++K  R 
Sbjct: 2  ALTKADLAETLFEKVGLSKRDAKETVEVFFEEIKQALESGEQVKLSGFGNFDLREKSERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV FK    LK R+ D
Sbjct: 62 GRNPKTGEDIPISARRVVTFKPGQKLKARVED 93


>gi|114776313|ref|ZP_01451358.1| integration host factor, alpha subunit [Mariprofundus
          ferrooxydans PV-1]
 gi|114553143|gb|EAU55541.1| integration host factor, alpha subunit [Mariprofundus
          ferrooxydans PV-1]
          Length = 94

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 61/91 (67%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++ + + +  GL++K+S   V ++ + I DS  RGE +K+S F  F V++K +R G
Sbjct: 1  MTKAEIARIVHERVGLTKKESAEIVESVLDVIRDSLERGENVKVSGFGHFMVREKHARRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T  ++ I+PR VV F+AS +LK ++ +
Sbjct: 61 RNPKTGTDITIEPRSVVTFRASPLLKDKLAE 91


>gi|90406951|ref|ZP_01215142.1| integration host factor alpha subunit [Psychromonas sp. CNPT3]
 gi|90311993|gb|EAS40087.1| integration host factor alpha subunit [Psychromonas sp. CNPT3]
          Length = 102

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 58/94 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++   +S   GLS++++  FV + F EI  +   GEA+KIS F  F +K KG R 
Sbjct: 2  ALTKAEISIHLSDTIGLSKREAKEFVESFFEEIKATLESGEAVKISGFGGFELKDKGERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T +++ I  RRVV F+A   LK+ +  ++
Sbjct: 62 GRNPKTGEDIPIAARRVVTFRAGQKLKELVETNL 95


>gi|262196926|ref|YP_003268135.1| integration host factor, subunit alpha [Haliangium ochraceum DSM
          14365]
 gi|262080273|gb|ACY16242.1| integration host factor, alpha subunit [Haliangium ochraceum DSM
          14365]
          Length = 100

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 59/87 (67%), Gaps = 1/87 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T++D++ ++ ++ G  S+K++   V T+F+ I  +  +GE IKIS F  F V++K +R+
Sbjct: 4  MTKADIIDAVYEKVGGFSKKEAAEIVETVFDTIKQTLEQGEKIKISGFGNFVVREKKARI 63

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN QT +E+ I  RRV+ FK S +LK
Sbjct: 64 GRNPQTGEEITISARRVLTFKPSQVLK 90


>gi|39996621|ref|NP_952572.1| integration host factor subunit alpha [Geobacter sulfurreducens
          PCA]
 gi|39983502|gb|AAR34895.1| integration host factor, alpha subunit [Geobacter sulfurreducens
          PCA]
 gi|298505634|gb|ADI84357.1| integration host factor, alpha subunit [Geobacter sulfurreducens
          KN400]
          Length = 91

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 55/89 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I ++ G S+K+S   V  +F  I ++  RGE IKI+ F  F VK K  R G
Sbjct: 1  MTKADIVEQIYEKIGFSKKESAELVERVFGLIKETLERGEKIKIAGFGNFVVKDKADRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E+ I  R+++ FK S +LK  I
Sbjct: 61 RNPQTGDEIIISARKILTFKPSQVLKSSI 89


>gi|77919025|ref|YP_356840.1| integration host factor subunit alpha [Pelobacter carbinolicus
          DSM 2380]
 gi|77545108|gb|ABA88670.1| integration host factor, alpha subunit [Pelobacter carbinolicus
          DSM 2380]
          Length = 93

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 59/89 (66%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV+ +  + G S+K+S+  V  +F+ + ++  +GE IK++ F  F VKQK +R G
Sbjct: 1  MTKADLVEKVYLKTGFSKKESSDIVEMVFDLMKNTLEKGEKIKLAGFGNFVVKQKATRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I  R ++ FK S +LK  I
Sbjct: 61 RNPQTGEEIEISSRNILTFKPSQVLKAAI 89


>gi|78222629|ref|YP_384376.1| histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
 gi|78193884|gb|ABB31651.1| Histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
          Length = 91

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 55/89 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I ++ G S+K+S   V  +F  I ++   GE IKI+ F  F VK+K  R G
Sbjct: 1  MTKADIVEQIYEKVGFSKKESAELVERVFGLIKETLENGEKIKIAGFGNFVVKEKADRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E+ I  RR++ FK S +LK  I
Sbjct: 61 RNPQTGDEIIISARRILTFKPSQVLKSSI 89


>gi|327398825|ref|YP_004339694.1| histone family protein DNA-binding protein [Hippea maritima DSM
           10411]
 gi|327181454|gb|AEA33635.1| histone family protein DNA-binding protein [Hippea maritima DSM
           10411]
          Length = 404

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 58/91 (63%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+S+LV++I+++ G S K +  FV    + + ++   G+++ I+ F  F+V Q+G R G
Sbjct: 314 MTKSELVEAIARKMGSSVKGANAFVNAFVDVVSEALKSGKSVSITGFGKFYVSQRGERTG 373

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN QT + +KI P ++  FKA  +LK+ I D
Sbjct: 374 RNPQTGEVIKIKPHKIPAFKAGQVLKQTIND 404


>gi|33593555|ref|NP_881199.1| integration host factor subunit alpha [Bordetella pertussis
          Tohama I]
 gi|81713302|sp|Q7VVR6|IHFA_BORPE RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|33572911|emb|CAE42847.1| integration host factor alpha-subunit [Bordetella pertussis
          Tohama I]
 gi|332382962|gb|AEE67809.1| integration host factor subunit alpha [Bordetella pertussis CS]
          Length = 113

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 56/89 (62%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +T+T+++L + + +  GL+++++   V T F EI D+  RG+++K+S F  F V+ K  
Sbjct: 9  PRTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPP 68

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          R GRN +T + + I  RRVV F AS  LK
Sbjct: 69 RPGRNPKTGETIPIAARRVVTFHASQKLK 97


>gi|33597181|ref|NP_884824.1| integration host factor subunit alpha [Bordetella parapertussis
          12822]
 gi|33601025|ref|NP_888585.1| integration host factor subunit alpha [Bordetella bronchiseptica
          RB50]
 gi|81713742|sp|Q7W7C5|IHFA_BORPA RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|81714215|sp|Q7WKR3|IHFA_BORBR RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|33573608|emb|CAE37892.1| integration host factor alpha-subunit [Bordetella parapertussis]
 gi|33575460|emb|CAE32538.1| integration host factor alpha-subunit [Bordetella bronchiseptica
          RB50]
          Length = 113

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 56/89 (62%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +T+T+++L + + +  GL+++++   V T F EI D+  RG+++K+S F  F V+ K  
Sbjct: 9  PRTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPP 68

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          R GRN +T + + I  RRVV F AS  LK
Sbjct: 69 RPGRNPKTGETIPIAARRVVTFHASQKLK 97


>gi|317403230|gb|EFV83749.1| integration host factor subunit alpha [Achromobacter xylosoxidans
          C54]
          Length = 112

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 56/89 (62%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +T+T+++L + + +  GL+++++   V T F EI D+  RG+++K+S F  F V+ K  
Sbjct: 9  PRTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPP 68

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          R GRN +T + + I  RRVV F AS  LK
Sbjct: 69 RPGRNPKTGETIPIAARRVVTFHASQKLK 97


>gi|39997218|ref|NP_953169.1| integration host factor subunit alpha [Geobacter sulfurreducens
          PCA]
 gi|39984108|gb|AAR35496.1| integration host factor, alpha subunit [Geobacter sulfurreducens
          PCA]
          Length = 91

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 57/89 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ +S   G+S+KDS   V  +F+ + ++   GE IKIS F  F +K K +R G
Sbjct: 1  MTKADIVERVSDRCGISKKDSIEMVELVFSILKNTLEIGEDIKISGFGKFEIKNKHARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   + I+ RR++ FK S+ILK  I
Sbjct: 61 RNPQTGDAITIEARRILTFKPSTILKNNI 89


>gi|197118378|ref|YP_002138805.1| integration host factor subunit alpha [Geobacter bemidjiensis
          Bem]
 gi|253700842|ref|YP_003022031.1| histone family protein DNA-binding protein [Geobacter sp. M21]
 gi|197087738|gb|ACH39009.1| integration host factor, alpha subunit [Geobacter bemidjiensis
          Bem]
 gi|251775692|gb|ACT18273.1| histone family protein DNA-binding protein [Geobacter sp. M21]
          Length = 92

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 57/89 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I ++ G S+K+S   V T+F+ I  +   G+ IKI+ F  F VK+K  R G
Sbjct: 1  MTKADIVEKIYEKVGFSKKESAELVETVFDLIKTTLEEGDKIKIAGFGNFVVKEKADRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I  R+++ FK S +LK  I
Sbjct: 61 RNPQTGEEITIVARKILTFKPSQVLKSAI 89


>gi|293604706|ref|ZP_06687106.1| integration host factor subunit alpha [Achromobacter piechaudii
          ATCC 43553]
 gi|292816875|gb|EFF75956.1| integration host factor subunit alpha [Achromobacter piechaudii
          ATCC 43553]
          Length = 113

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 56/89 (62%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +T+T+++L + + +  GL+++++   V T F EI D+  RG+++K+S F  F V+ K  
Sbjct: 10 PRTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPP 69

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          R GRN +T + + I  RRVV F AS  LK
Sbjct: 70 RPGRNPKTGETIPIAARRVVTFHASQKLK 98


>gi|121997236|ref|YP_001002023.1| integration host factor subunit alpha [Halorhodospira halophila
          SL1]
 gi|166918508|sp|A1WU59|IHFA_HALHL RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|121588641|gb|ABM61221.1| integration host factor, alpha subunit [Halorhodospira halophila
          SL1]
          Length = 101

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++T++D+ + + +E GL+++++   V   F EI  +   GE +K+SSF  F ++ K  R 
Sbjct: 2  SLTKADMAERLFEEVGLNKREAKELVELFFEEIRTALENGEPVKLSSFGNFELRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEEIPISARRVVTFRPGQKLKSRV 91


>gi|163856951|ref|YP_001631249.1| integration host factor subunit alpha [Bordetella petrii DSM
          12804]
 gi|163260679|emb|CAP42981.1| integration host factor alpha-subunit [Bordetella petrii]
          Length = 107

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 56/89 (62%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +T+T+++L + + +  GL+++++   V T F EI D+  RG+++K+S F  F V+ K  
Sbjct: 5  PRTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRNKPP 64

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          R GRN +T + + I  RRVV F AS  LK
Sbjct: 65 RPGRNPKTGETIPIAARRVVTFHASQKLK 93


>gi|311105461|ref|YP_003978314.1| integration host factor subunit alpha [Achromobacter xylosoxidans
          A8]
 gi|310760150|gb|ADP15599.1| integration host factor, alpha subunit [Achromobacter
          xylosoxidans A8]
          Length = 112

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 56/89 (62%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +T+T+++L + + +  GL+++++   V T F EI D+  RG+++K+S F  F V+ K  
Sbjct: 6  PRTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPP 65

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          R GRN +T + + I  RRVV F AS  LK
Sbjct: 66 RPGRNPKTGETIPIAARRVVTFHASQKLK 94


>gi|288940721|ref|YP_003442961.1| integration host factor subunit alpha [Allochromatium vinosum DSM
          180]
 gi|288896093|gb|ADC61929.1| integration host factor, alpha subunit [Allochromatium vinosum
          DSM 180]
          Length = 99

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + + +E GL+++++   V   F EI  +  RGE +K+S F  F +++K  R 
Sbjct: 2  ALTKADMAEHLFEELGLNKREAKDIVEMFFEEIRAALERGEQVKLSGFGNFDLREKKERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEEIPITARRVVTFRPGQKLKSRV 91


>gi|256822926|ref|YP_003146889.1| integration host factor subunit alpha [Kangiella koreensis DSM
          16069]
 gi|256796465|gb|ACV27121.1| integration host factor, alpha subunit [Kangiella koreensis DSM
          16069]
          Length = 100

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 54/92 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + + +E GL++++S   V   F +I D+   G  +K+S F  F ++ K  R 
Sbjct: 2  ALTKADMAERLYEELGLNKRESKEIVEAFFEQIRDALEDGYNVKLSGFGNFELRDKAQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +EV I  RRVV FK    L+ ++ D
Sbjct: 62 GRNPKTGEEVPISARRVVTFKPGQKLRGKVAD 93


>gi|90021230|ref|YP_527057.1| integration host factor subunit alpha [Saccharophagus degradans
          2-40]
 gi|123396256|sp|Q21KD4|IHFA_SACD2 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|89950830|gb|ABD80845.1| integration host factor, alpha subunit [Saccharophagus degradans
          2-40]
          Length = 101

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 55/93 (59%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS ++T++DL + + +E G +++++   V   F EI +S    E +K+S F  F ++ K 
Sbjct: 1  MSTSLTKADLAEKLYEELGFNKREAKELVEHFFEEIRNSLEDNEQVKLSGFGNFDLRDKK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T +E+ I  RRVV F+    LK R+
Sbjct: 61 QRPGRNPKTGEEIPITARRVVTFRPGQKLKARV 93


>gi|307822734|ref|ZP_07652965.1| integration host factor, alpha subunit [Methylobacter
          tundripaludum SV96]
 gi|307736338|gb|EFO07184.1| integration host factor, alpha subunit [Methylobacter
          tundripaludum SV96]
          Length = 98

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D  + +  E GL+++++   V   F EI  S   GE +KIS F  F ++ K SR 
Sbjct: 2  ALTKADFAERLFDELGLNKREAKDMVEMFFEEIKGSLEHGEQVKISGFGKFELRDKSSRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F++   LK R+
Sbjct: 62 GRNPKTGEEIPITARRVVTFRSGQKLKARV 91


>gi|89900136|ref|YP_522607.1| integration host factor subunit alpha [Rhodoferax ferrireducens
          T118]
 gi|123091398|sp|Q21YS7|IHFA_RHOFD RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|89344873|gb|ABD69076.1| integration host factor, alpha subunit [Rhodoferax ferrireducens
          T118]
          Length = 102

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 56/92 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++ L + + ++ GL++++S   V   F+ + DS ++GE +KIS F  F ++ K  R 
Sbjct: 3  ALTKAQLAELLFEKIGLNKRESKDMVDAFFDLVADSLLKGEDVKISGFGNFQIRTKAPRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + + I  RRVV F A   LK++I D
Sbjct: 63 GRNPRTGETIPIQARRVVTFHAGYKLKEQIQD 94


>gi|118577357|ref|YP_899597.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
 gi|118504862|gb|ABL01344.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
          Length = 101

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 56/89 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+ + +S   G+ ++++   V T+ + + D+   GE IKIS F  F+VKQK  R G
Sbjct: 1  MTKADITEKVSNTIGVPKREAADLVETVLSIMKDTLASGERIKISGFGCFNVKQKTDRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I  RRV+ FK SSIL+  I
Sbjct: 61 RNPQTGERLTISARRVLTFKPSSILRDAI 89


>gi|59711844|ref|YP_204620.1| integration host factor subunit alpha [Vibrio fischeri ES114]
 gi|197336165|ref|YP_002156041.1| integration host factor, alpha subunit [Vibrio fischeri MJ11]
 gi|75507023|sp|Q5E5G4|IHFA_VIBF1 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709758|sp|B5FDX6|IHFA_VIBFM RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|59479945|gb|AAW85732.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Vibrio fischeri ES114]
 gi|197317655|gb|ACH67102.1| integration host factor, alpha subunit [Vibrio fischeri MJ11]
          Length = 98

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ ++ GLS++D+   V   F EI  +   GE +K+S F  F +++K  R 
Sbjct: 2  ALTKADLAETLFEKVGLSKRDAKETVEVFFEEIKQALESGEQVKLSGFGNFDLREKSERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV FK    LK R+
Sbjct: 62 GRNPKTGEDIPISARRVVTFKPGQKLKARV 91


>gi|126215724|sp|Q6MMJ0|IHFA_BDEBA RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
          Length = 110

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 57/86 (66%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+++ ++ G S+K+++  V  +F+ +      GE +KIS F  F V+ K  R+G
Sbjct: 1  MTKADIVENVYQKIGFSKKEASELVELVFDTLKTVLQDGEKVKISGFGNFVVRGKNERIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +++KI  RRV+ F+ S +LK
Sbjct: 61 RNPQTGEQIKISARRVLTFRPSQVLK 86


>gi|313672997|ref|YP_004051108.1| histone family protein DNA-binding protein [Calditerrivibrio
          nitroreducens DSM 19672]
 gi|312939753|gb|ADR18945.1| histone family protein DNA-binding protein [Calditerrivibrio
          nitroreducens DSM 19672]
          Length = 92

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 58/89 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I +  G+S+KD  + V ++FN+I D  +    +KIS F +F VK +G R+G
Sbjct: 1  MTKADIVDIIYETLGISKKDIYKVVDSVFNKIKDEILSKNNVKISGFGSFEVKTRGRRIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E  I+ R VV FK S +LK+ +
Sbjct: 61 RNPKTGEEKVIEARTVVSFKPSRLLKEEV 89


>gi|322419725|ref|YP_004198948.1| histone family protein DNA-binding protein [Geobacter sp. M18]
 gi|320126112|gb|ADW13672.1| histone family protein DNA-binding protein [Geobacter sp. M18]
          Length = 92

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 57/89 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I ++ G S+K+S   V T+F+ I  +   G+ IKI+ F  F VK+K  R G
Sbjct: 1  MTKADIVEKIYEKVGFSKKESAELVETVFDLIKSTLEDGDKIKIAGFGNFVVKEKSDRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I  R+++ FK S +LK  I
Sbjct: 61 RNPQTGEEITIVARKILTFKPSQVLKSAI 89


>gi|253998435|ref|YP_003050498.1| integration host factor subunit alpha [Methylovorus sp. SIP3-4]
 gi|313200510|ref|YP_004039168.1| integration host factor subunit alpha [Methylovorus sp. MP688]
 gi|253985114|gb|ACT49971.1| integration host factor, alpha subunit [Methylovorus sp. SIP3-4]
 gi|312439826|gb|ADQ83932.1| integration host factor, alpha subunit [Methylovorus sp. MP688]
          Length = 100

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 59/99 (59%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T++DL   + ++ GL+++++   V   F EI  +   G+++K+S F  F ++QK  R 
Sbjct: 2   TLTKADLADLLFEQVGLNKREAKDMVEAFFEEIRTALESGDSVKLSGFGNFELRQKSERP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           GRN +T +E+ I  RRVV F AS  LK ++ +   G + 
Sbjct: 62  GRNPKTGEEIPITARRVVTFHASQKLKLKVEEAYAGDRA 100


>gi|118580291|ref|YP_901541.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
 gi|118503001|gb|ABK99483.1| bacterial nucleoid protein Hbs [Pelobacter propionicus DSM 2379]
          Length = 94

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+ + +S   G ++K+S   V  +F+ I  +   GE IKI+ F  F VKQK  R G
Sbjct: 1  MTKADIFEKVSSNLGYTKKESAELVEAVFSLIKSTLESGEKIKIAGFGNFEVKQKADRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN Q  + + I+ RR++ FK S +LK  I
Sbjct: 61 RNPQNGETITIEARRILTFKPSGVLKTAI 89


>gi|91776349|ref|YP_546105.1| integration host factor subunit alpha [Methylobacillus
          flagellatus KT]
 gi|123254152|sp|Q1GZS3|IHFA_METFK RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|91710336|gb|ABE50264.1| integration host factor, alpha subunit [Methylobacillus
          flagellatus KT]
          Length = 100

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 58/96 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++DL   + ++ GL+++++   V   F EI  +   G+++K+S F  F ++QK  R 
Sbjct: 2  TLTKADLADLLFEQVGLNKREAKDMVEAFFEEIRMALEAGDSVKLSGFGNFELRQKSERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T +E+ I  RRVV F AS  LK ++ +   G
Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKSKVEEAYAG 97


>gi|222530470|ref|YP_002574352.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          bescii DSM 6725]
 gi|222457317|gb|ACM61579.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          bescii DSM 6725]
          Length = 92

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 60/90 (66%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++ +L+K++S++ GL++KDS + +  L   I ++  +GE I++  F +F V+Q+  R G
Sbjct: 1  MSKEELIKAMSQKSGLTKKDSEKALNALIESIQEALSKGEKIQLVGFGSFEVRQRAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V VFKA  +LK+ ++
Sbjct: 61 RNPQTREEIIIPATKVPVFKAGKMLKQAVV 90


>gi|302039381|ref|YP_003799703.1| integration host factor subunit alpha [Candidatus Nitrospira
          defluvii]
 gi|300607445|emb|CBK43778.1| Integration host factor, alpha subunit [Candidatus Nitrospira
          defluvii]
          Length = 91

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 54/87 (62%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          ++D+   I K+ G+S+ D+   V  + N +     +G+A+KI+ F  F V+ KG+R GRN
Sbjct: 3  KADIANEIFKQVGVSKNDAADIVELVLNLLKGVLQKGDAVKIAGFGNFVVRSKGARKGRN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           +T +E+ I PRRVV F+ S + KK +
Sbjct: 63 PRTGEEIGITPRRVVTFRPSQVFKKYV 89


>gi|117618302|ref|YP_856844.1| integration host factor, alpha subunit [Aeromonas hydrophila
          subsp. hydrophila ATCC 7966]
 gi|330829620|ref|YP_004392572.1| integration host factor subunit alpha [Aeromonas veronii B565]
 gi|166918496|sp|A0KKP3|IHFA_AERHH RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|117559709|gb|ABK36657.1| integration host factor, alpha subunit [Aeromonas hydrophila
          subsp. hydrophila ATCC 7966]
 gi|328804756|gb|AEB49955.1| Integration host factor subunit alpha [Aeromonas veronii B565]
          Length = 98

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + +  + G+S++++   V   F EI  +  RGE +KIS F  F +++K  R 
Sbjct: 2  ALTKADIAEHLFTQLGMSKREAKDMVEAFFEEIRQALERGEQVKISGFGNFDLREKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91


>gi|332290335|ref|YP_004421187.1| integration host factor subunit alpha [Gallibacterium anatis
          UMN179]
 gi|330433231|gb|AEC18290.1| integration host factor subunit alpha [Gallibacterium anatis
          UMN179]
          Length = 98

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ +L +++ ++F L++ D+   V + F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  TLTKVELAENLIEKFNLNKNDAKELVESFFEEIRQALESGEEVKLSGFGNFELRDKTPRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V I  RRVVVFKA   L+ R+
Sbjct: 62 GRNPKTGEYVPITARRVVVFKAGQKLRARV 91


>gi|284108794|ref|ZP_06386459.1| Histone-like bacterial DNA-binding protein [Candidatus
          Poribacteria sp. WGA-A3]
 gi|283829868|gb|EFC34159.1| Histone-like bacterial DNA-binding protein [Candidatus
          Poribacteria sp. WGA-A3]
          Length = 91

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 53/85 (62%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          ++D+   I ++ G+S+ ++   V  +   + D   +GEA+KI+ F  F V+ KG R GRN
Sbjct: 3  KADIANYICEQVGVSKTEAMGLVEYVLQCMKDVLRKGEAVKIAGFGNFMVRNKGERKGRN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKK 91
           +T +E+ I PRRVV F+AS I K+
Sbjct: 63 PRTGEEIAITPRRVVTFRASQIFKR 87


>gi|160900157|ref|YP_001565739.1| integration host factor subunit beta [Delftia acidovorans SPH-1]
 gi|160365741|gb|ABX37354.1| integration host factor, beta subunit [Delftia acidovorans SPH-1]
          Length = 113

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 4/111 (3%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +TRSDLV+ ++  FG LS++D+ + V T+ + + D+ VRG  I+I  F +F V  +  R+
Sbjct: 1   MTRSDLVEELAARFGQLSQRDAEQAVKTILDAVSDALVRGHRIEIRGFGSFSVNHRPPRM 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR-GRKCNKDDVTSPSGS 113
           GRN ++ + V I  +RV  FK    L++ +  D+R G   + D+  S +GS
Sbjct: 61  GRNPRSGEAVHIPSKRVPHFKPGKALREAV--DLRPGVAIDTDNTGSGTGS 109


>gi|187478558|ref|YP_786582.1| integration host factor subunit alpha [Bordetella avium 197N]
 gi|123752290|sp|Q2KZM3|IHFA_BORA1 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|115423144|emb|CAJ49675.1| integration host factor alpha-subunit [Bordetella avium 197N]
          Length = 116

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 57/92 (61%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            +T+T+++L + + +  GL+++++   V T F EI ++  RG+++K+S F  F V+ K  
Sbjct: 9   PRTLTKAELAELLFERVGLNKREAKDIVDTFFEEIREALARGDSVKLSGFGNFQVRDKPP 68

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 69  RPGRNPKTGETIPIAARRVVTFHASQKLKSTV 100


>gi|117925356|ref|YP_865973.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
 gi|117609112|gb|ABK44567.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
          Length = 96

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++D+V+++    GLS+K+S   V ++F  I      GE +KI  F  F +  K  R 
Sbjct: 2  TMTKADIVQTVYHRLGLSKKESADVVESVFEIIRSQLESGEPVKIYGFGGFSMLDKKPRQ 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++V+I  RRVV FKAS IL  R+
Sbjct: 62 GRNPKTGEDVEISARRVVTFKASQILLDRV 91


>gi|189423310|ref|YP_001950487.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
 gi|189419569|gb|ACD93967.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
          Length = 91

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 57/89 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I    G+++K+S   V  +F+ +  +   GE +KIS F +F VKQK  R G
Sbjct: 1  MTKADIVEKIHTNTGMTQKESAEMVEAVFSIMKSTLETGETLKISGFGSFVVKQKNDRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I+ RR++ FK S++L+  I
Sbjct: 61 RNPQTGEAITIEARRILTFKPSTVLRDAI 89


>gi|146296237|ref|YP_001180008.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          saccharolyticus DSM 8903]
 gi|302871272|ref|YP_003839908.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          obsidiansis OB47]
 gi|312128213|ref|YP_003993087.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          hydrothermalis 108]
 gi|312134569|ref|YP_004001907.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          owensensis OL]
 gi|312623028|ref|YP_004024641.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          kronotskyensis 2002]
 gi|312792841|ref|YP_004025764.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312876107|ref|ZP_07736095.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          lactoaceticus 6A]
 gi|145409813|gb|ABP66817.1| bacterial nucleoid protein Hbs [Caldicellulosiruptor
          saccharolyticus DSM 8903]
 gi|302574131|gb|ADL41922.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          obsidiansis OB47]
 gi|311774620|gb|ADQ04107.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          owensensis OL]
 gi|311778232|gb|ADQ07718.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311797093|gb|EFR13434.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          lactoaceticus 6A]
 gi|312179981|gb|ADQ40151.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312203495|gb|ADQ46822.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          kronotskyensis 2002]
          Length = 91

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 58/86 (67%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++ GL++KD+ + +    + + ++  +GE +++  F +F V+++  RVG
Sbjct: 1  MNKTDLISAMAEKSGLTKKDAEKALNAFVDAVTEALSKGEKVQLVGFGSFEVRERAERVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+KI   +V VFKA  +LK
Sbjct: 61 RNPQTQEEIKIPATKVPVFKAGKMLK 86


>gi|118578624|ref|YP_899874.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
 gi|118501334|gb|ABK97816.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
          Length = 91

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 58/86 (67%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I    G+++K+S   + T+F+ +  +   GE +KIS F +F VKQK +R G
Sbjct: 1  MTKADIVERIHAGTGMTQKESAEMMETVFSIMKSTLETGETLKISGFGSFVVKQKNARRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + + I+ RRV+ FK S++L+
Sbjct: 61 RNPQTGETITIEARRVLSFKPSTVLR 86


>gi|220934628|ref|YP_002513527.1| integration host factor, alpha subunit [Thioalkalivibrio sp.
          HL-EbGR7]
 gi|254803522|sp|B8GRI6|IHFA_THISH RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|219995938|gb|ACL72540.1| integration host factor, alpha subunit [Thioalkalivibrio sp.
          HL-EbGR7]
          Length = 99

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + + +E GL+++++   V   F E+  +  RGE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADMSERLFEELGLNKREAKELVEMFFEEVRMALERGEQVKLSGFGNFTLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEEIPISARRVVTFRPGQKLKARV 91


>gi|182678712|ref|YP_001832858.1| histone family protein DNA-binding protein [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182634595|gb|ACB95369.1| histone family protein DNA-binding protein [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 122

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 3/89 (3%)

Query: 3   KTITRSDLVKSI--SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           KT TR+DL+ +I  S  F LSR  +         EI ++ +RGE +K+ SF  F V+ K 
Sbjct: 18  KTATRADLLDAIYTSCSF-LSRAQTREIFEMALEEISEALLRGETVKLRSFGLFSVRAKR 76

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSIL 89
            R+GRN +T  EV I PRRV+ FKAS +L
Sbjct: 77  ERIGRNPRTGVEVPIKPRRVLTFKASPVL 105


>gi|254491603|ref|ZP_05104782.1| integration host factor, alpha subunit [Methylophaga thiooxidans
          DMS010]
 gi|224463081|gb|EEF79351.1| integration host factor, alpha subunit [Methylophaga thiooxydans
          DMS010]
          Length = 98

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 51/90 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + +  E G +++++   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADMTEQLYDELGFNKREAKELVEMFFEEIRSALENGEQVKLSGFGNFELRDKSERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEEIPISARRVVTFRPGQKLKARV 91


>gi|227510316|ref|ZP_03940365.1| DNA-binding protein HU [Lactobacillus brevis subsp. gravesensis
          ATCC 27305]
 gi|227513323|ref|ZP_03943372.1| DNA-binding protein HU [Lactobacillus buchneri ATCC 11577]
 gi|227524467|ref|ZP_03954516.1| DNA-binding protein HU [Lactobacillus hilgardii ATCC 8290]
 gi|227083196|gb|EEI18508.1| DNA-binding protein HU [Lactobacillus buchneri ATCC 11577]
 gi|227088337|gb|EEI23649.1| DNA-binding protein HU [Lactobacillus hilgardii ATCC 8290]
 gi|227189968|gb|EEI70035.1| DNA-binding protein HU [Lactobacillus brevis subsp. gravesensis
          ATCC 27305]
          Length = 91

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 53/84 (63%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV +++ E GL++KD+T  V  +F+ I  S  +GE +++  F  F V+Q+ +R GRN
Sbjct: 4  KAELVTNVATETGLTKKDATAAVDAVFDSIQASLAKGEKVQLIGFGNFEVRQRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT QE++I   +V  FK    LK
Sbjct: 64 PQTGQEIQIPASKVPAFKPGKALK 87


>gi|91787981|ref|YP_548933.1| integration host factor subunit alpha [Polaromonas sp. JS666]
 gi|123059944|sp|Q12BQ7|IHFA_POLSJ RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|91697206|gb|ABE44035.1| integration host factor, alpha subunit [Polaromonas sp. JS666]
          Length = 111

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 55/95 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +  +T++ L + + ++ GL++++S   +   F+ I DS V G  +KIS F  F ++ K  
Sbjct: 10  TPALTKAHLAELLFEQIGLNKRESKDMIDAFFDLISDSLVDGNDVKISGFGNFQIRTKAP 69

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS  LK +I  D
Sbjct: 70  RPGRNPRTGEAIPIQARRVVTFHASHKLKDQIQGD 104


>gi|320354295|ref|YP_004195634.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
 gi|320122797|gb|ADW18343.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
          Length = 95

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 55/94 (58%), Gaps = 1/94 (1%)

Query: 4  TITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T+T++DLV+ + K    L++  ST  V T       S + GE + +S F  F++K K SR
Sbjct: 2  TLTKADLVQQVYKTHPNLTKSQSTESVETFLALSKSSLITGEDLLLSGFGKFNIKDKKSR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           GRN QT  E+ +D RRVV FK S IL+ RI  D
Sbjct: 62 RGRNPQTGNELTLDARRVVTFKPSGILRSRINSD 95


>gi|89094709|ref|ZP_01167645.1| integration host factor, alpha subunit [Oceanospirillum sp.
          MED92]
 gi|89081055|gb|EAR60291.1| integration host factor, alpha subunit [Oceanospirillum sp.
          MED92]
          Length = 101

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++T++D+ + +++E GL+++++   V + F+EI       E +K+S F  F ++ K  R 
Sbjct: 3  SLTKADMAERLNEELGLNKREAKEMVESFFDEIRACLAANEQVKLSGFGNFDLRDKRQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +EV I  RRVV F+    LK R+
Sbjct: 63 GRNPKTGEEVPISARRVVTFRPGQKLKDRV 92


>gi|303258448|ref|ZP_07344451.1| integration host factor subunit alpha [Burkholderiales bacterium
           1_1_47]
 gi|330999748|ref|ZP_08323456.1| putative integration host factor, alpha subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|302858894|gb|EFL81982.1| integration host factor subunit alpha [Burkholderiales bacterium
           1_1_47]
 gi|329573910|gb|EGG55490.1| putative integration host factor, alpha subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 136

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 3/98 (3%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+S L   I ++FGL ++     V   F+E  +  VRGE +K+S+F  F +KQK  R 
Sbjct: 30  TLTKSHLADVIYEQFGLPKRFCKEIVDLFFDEALECLVRGEELKLSNFGVFSIKQKSERP 89

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN ++ +   I  R+VV F  S  L+K +++   GRK
Sbjct: 90  GRNPKSGESAIIKARQVVSFHPSGQLRKEVVE---GRK 124


>gi|237808480|ref|YP_002892920.1| integration host factor, alpha subunit [Tolumonas auensis DSM
          9187]
 gi|259491534|sp|C4LFG7|IHFA_TOLAT RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|237500741|gb|ACQ93334.1| integration host factor, alpha subunit [Tolumonas auensis DSM
          9187]
          Length = 106

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + +  E G+S++D+   V T F +I  +   GE +KIS F  F ++ K  R 
Sbjct: 2  ALTKADIAEHLFTELGISKRDAKELVETFFEDIRLALESGEQVKISGFGNFELRTKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|260893900|ref|YP_003239997.1| histone family protein DNA-binding protein [Ammonifex degensii
          KC4]
 gi|260866041|gb|ACX53147.1| histone family protein DNA-binding protein [Ammonifex degensii
          KC4]
          Length = 95

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 58/89 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDLV  ++++  +++KD+ + VT +F+ I ++  RG+ +++  F TF V+++ +R G
Sbjct: 1  MNKSDLVAQVAEKAEMTKKDAEKAVTAVFDAIAEALARGDKVQLVGFGTFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I   +V VF+A   LK  +
Sbjct: 61 RNPQTGAEIEIAACKVPVFRAGKALKAAV 89


>gi|261855913|ref|YP_003263196.1| integration host factor, subunit alpha [Halothiobacillus
          neapolitanus c2]
 gi|261836382|gb|ACX96149.1| integration host factor, alpha subunit [Halothiobacillus
          neapolitanus c2]
          Length = 100

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DLV+ +  E GL+++++  FV   F E+  +   GE IK+S F  F ++ K  R 
Sbjct: 2  ALTKADLVEKLHAELGLNKREAKDFVDIFFEELRATLESGEEIKLSGFGNFQLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + + +  RRVV F+A   LK  +
Sbjct: 62 GRNPRTGEMIPVSARRVVTFRAGQKLKAMV 91


>gi|23006898|ref|ZP_00049004.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magnetotacticum MS-1]
          Length = 80

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 47/68 (69%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR+DL +++ ++ GLSR +S   V T+  EIC+    GE +K+SSF +F V+ KG R
Sbjct: 4  KTVTRADLSEAVYQQVGLSRAESAALVETVLAEICNCLSSGETVKLSSFGSFVVRSKGKR 63

Query: 63 VGRNLQTN 70
          +GRN +T 
Sbjct: 64 IGRNPKTG 71


>gi|254785577|ref|YP_003073006.1| integration host factor subunit alpha [Teredinibacter turnerae
           T7901]
 gi|237683400|gb|ACR10664.1| integration host factor, alpha subunit [Teredinibacter turnerae
           T7901]
          Length = 107

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 55/91 (60%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +++T++DL +++ +E G +++++   V   F EI ++    E +K+S F  F ++ K  R
Sbjct: 10  ESLTKADLAENLYEELGFNKREAKELVEYFFEEIRNALENNEQVKLSGFGNFDLRDKKQR 69

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            GRN +T +E+ I  RRVV F+    LK R+
Sbjct: 70  PGRNPKTGEEIPITARRVVTFRPGQKLKARV 100


>gi|56475892|ref|YP_157481.1| integration host factor subunit alpha [Aromatoleum aromaticum
          EbN1]
 gi|81677575|sp|Q5P7Y1|IHFA_AZOSE RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|56311935|emb|CAI06580.1| integration host factor, alpha-subunit [Aromatoleum aromaticum
          EbN1]
          Length = 103

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 55/93 (59%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+ T+T+++L   + +  GL+++++   V   F EI  +  RGE +K+S F  F ++ K 
Sbjct: 1  MNVTLTKAELADLLFERVGLNKREAKDMVEGFFEEIRQALERGECVKLSGFGNFQLRDKP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T +E+ I  RRVV F AS  LK  +
Sbjct: 61 QRPGRNPKTGEEIPITARRVVTFHASQKLKAAV 93


>gi|54309334|ref|YP_130354.1| integration host factor subunit alpha [Photobacterium profundum
          SS9]
 gi|46913770|emb|CAG20552.1| putative integration host factor, alpha subunit [Photobacterium
          profundum SS9]
          Length = 103

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 54/93 (58%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          +S  +T++DL + + +  GLS++D+   V   F EI  +   GE +K+S F  F ++ K 
Sbjct: 4  LSMALTKADLAEDLFENVGLSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKN 63

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T +++ I  RRVV F+    LK R+
Sbjct: 64 ERPGRNPKTGEDIPISARRVVTFRPGQKLKARV 96


>gi|226954296|ref|ZP_03824760.1| integration host factor (IHF), alpha subunit, DNA-binding protein
          [Acinetobacter sp. ATCC 27244]
 gi|294649378|ref|ZP_06726809.1| integration host factor subunit alpha [Acinetobacter haemolyticus
          ATCC 19194]
 gi|226834967|gb|EEH67350.1| integration host factor (IHF), alpha subunit, DNA-binding protein
          [Acinetobacter sp. ATCC 27244]
 gi|292824748|gb|EFF83520.1| integration host factor subunit alpha [Acinetobacter haemolyticus
          ATCC 19194]
          Length = 98

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 57/93 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+   +S+   L+R+++ + V   F+EI  + + GE +K+S F  F ++ K  R 
Sbjct: 3  ALTKADMADHLSELTSLNRREAKQMVELFFDEISQALISGEQVKLSGFGNFELRDKRERP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +E+ I  RRVV F+A    ++R+ ++
Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95


>gi|257092831|ref|YP_003166472.1| integration host factor subunit alpha [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
 gi|257045355|gb|ACV34543.1| integration host factor, alpha subunit [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
          Length = 100

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+++L   + ++ GL+++++   V   F EI ++  RG+ +K+S F  F ++ K  R 
Sbjct: 2  TLTKAELADLLFEKVGLNKREAKDMVEAFFEEIRNALERGDGVKLSGFGNFQLRDKPQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F AS  LK  +
Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKGEV 91


>gi|169634330|ref|YP_001708066.1| integration host factor subunit alpha [Acinetobacter baumannii
          SDF]
 gi|169797146|ref|YP_001714939.1| integration host factor subunit alpha [Acinetobacter baumannii
          AYE]
 gi|184156927|ref|YP_001845266.1| integration host factor subunit alpha [Acinetobacter baumannii
          ACICU]
 gi|213156063|ref|YP_002318108.1| integration host factor, alpha subunit [Acinetobacter baumannii
          AB0057]
 gi|215484609|ref|YP_002326844.1| integration host factor, alpha subunit [Acinetobacter baumannii
          AB307-0294]
 gi|239500688|ref|ZP_04659998.1| integration host factor subunit alpha [Acinetobacter baumannii
          AB900]
 gi|260551930|ref|ZP_05825792.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624]
 gi|260556048|ref|ZP_05828267.1| integration host factor, alpha subunit [Acinetobacter baumannii
          ATCC 19606]
 gi|262281021|ref|ZP_06058804.1| integration host factor alpha subunit [Acinetobacter
          calcoaceticus RUH2202]
 gi|293610417|ref|ZP_06692718.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|299771523|ref|YP_003733549.1| integration host factor subunit alpha [Acinetobacter sp. DR1]
 gi|301347474|ref|ZP_07228215.1| integration host factor subunit alpha [Acinetobacter baumannii
          AB056]
 gi|301510732|ref|ZP_07235969.1| integration host factor subunit alpha [Acinetobacter baumannii
          AB058]
 gi|301596052|ref|ZP_07241060.1| integration host factor subunit alpha [Acinetobacter baumannii
          AB059]
 gi|332856885|ref|ZP_08436294.1| integration host factor, alpha subunit [Acinetobacter baumannii
          6013150]
 gi|332867212|ref|ZP_08437477.1| integration host factor, alpha subunit [Acinetobacter baumannii
          6013113]
 gi|332873996|ref|ZP_08441931.1| integration host factor, alpha subunit [Acinetobacter baumannii
          6014059]
 gi|226707360|sp|B7GZZ4|IHFA_ACIB3 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226707361|sp|B7I698|IHFA_ACIB5 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226707362|sp|B2HTI2|IHFA_ACIBC RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226707363|sp|B0VV83|IHFA_ACIBS RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226707364|sp|B0V5Q4|IHFA_ACIBY RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226707551|sp|A3M2B0|IHFA_ACIBT RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|169150073|emb|CAM87967.1| integration host factor (IHF), alpha subunit, DNA-binding
          protein, DNA replication [Acinetobacter baumannii AYE]
 gi|169153122|emb|CAP02196.1| integration host factor (IHF), alpha subunit, DNA-binding
          protein, DNA replication [Acinetobacter baumannii]
 gi|183208521|gb|ACC55919.1| Bacterial nucleoid DNA-binding protein [Acinetobacter baumannii
          ACICU]
 gi|193076387|gb|ABO11054.2| integration host factor alpha subunit [Acinetobacter baumannii
          ATCC 17978]
 gi|213055223|gb|ACJ40125.1| integration host factor, alpha subunit [Acinetobacter baumannii
          AB0057]
 gi|213987020|gb|ACJ57319.1| integration host factor, alpha subunit [Acinetobacter baumannii
          AB307-0294]
 gi|260405333|gb|EEW98828.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624]
 gi|260410103|gb|EEX03402.1| integration host factor, alpha subunit [Acinetobacter baumannii
          ATCC 19606]
 gi|262257921|gb|EEY76656.1| integration host factor alpha subunit [Acinetobacter
          calcoaceticus RUH2202]
 gi|292827649|gb|EFF86013.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|298701611|gb|ADI92176.1| integration host factor subunit alpha [Acinetobacter sp. DR1]
 gi|322506823|gb|ADX02277.1| ihfA [Acinetobacter baumannii 1656-2]
 gi|323516692|gb|ADX91073.1| integration host factor subunit alpha [Acinetobacter baumannii
          TCDC-AB0715]
 gi|325124572|gb|ADY84095.1| integration host factor (IHF), alpha subunit, DNA-binding
          protein, DNA replication [Acinetobacter calcoaceticus
          PHEA-2]
 gi|332726939|gb|EGJ58444.1| integration host factor, alpha subunit [Acinetobacter baumannii
          6013150]
 gi|332734151|gb|EGJ65283.1| integration host factor, alpha subunit [Acinetobacter baumannii
          6013113]
 gi|332737737|gb|EGJ68629.1| integration host factor, alpha subunit [Acinetobacter baumannii
          6014059]
          Length = 98

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 57/93 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+   +S+   L+R+++ + V   F+EI  + + GE +K+S F  F ++ K  R 
Sbjct: 3  ALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRERP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +E+ I  RRVV F+A    ++R+ ++
Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95


>gi|294340016|emb|CAZ88380.1| integration host factor (IHF), alpha subunit [Thiomonas sp. 3As]
          Length = 115

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 57/92 (61%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + + +  GL++++S   V   F+ + D+  RGE +K+S F  F +++K  
Sbjct: 11  TPTLTKAELAEQLYERIGLNKRESKDMVDAFFDRVRDALGRGEDVKLSGFGHFQLREKAQ 70

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV+F AS   K ++
Sbjct: 71  RPGRNPRTGEIIPIAARRVVIFHASHKFKHQL 102


>gi|260779041|ref|ZP_05887933.1| integration host factor alpha subunit [Vibrio coralliilyticus
          ATCC BAA-450]
 gi|260605205|gb|EEX31500.1| integration host factor alpha subunit [Vibrio coralliilyticus
          ATCC BAA-450]
          Length = 98

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ ++ G S++D+   V   F EI  +   GE +K+S F  F +++K  R 
Sbjct: 2  ALTKADLAENLFEKLGYSKRDAKETVEAFFEEIRKALESGEQVKLSGFGNFDLREKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91


>gi|296135851|ref|YP_003643093.1| integration host factor, alpha subunit [Thiomonas intermedia K12]
 gi|295795973|gb|ADG30763.1| integration host factor, alpha subunit [Thiomonas intermedia K12]
          Length = 115

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 57/92 (61%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + + +  GL++++S   V   F+ + D+  RGE +K+S F  F +++K  
Sbjct: 11  TPTLTKAELAEQLYERIGLNKRESKDMVDAFFDRVRDALGRGEDVKLSGFGHFQLREKAQ 70

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV+F AS   K ++
Sbjct: 71  RPGRNPRTGEIIPIAARRVVIFHASHKFKHQL 102


>gi|90417317|ref|ZP_01225243.1| integration host factor, alpha subunit [marine gamma
          proteobacterium HTCC2207]
 gi|90330902|gb|EAS46165.1| integration host factor, alpha subunit [marine gamma
          proteobacterium HTCC2207]
          Length = 99

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL + + +E GL+++++   V   ++EI  +    +++K+S F  F ++ K SR 
Sbjct: 3  ALTKADLAEMLFEELGLNKREAKEIVEMFYSEISLALENNDSVKLSGFGNFELRDKKSRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV FK    LK R+
Sbjct: 63 GRNPKTGEEIPISARRVVTFKPGQKLKARV 92


>gi|253996949|ref|YP_003049013.1| integration host factor subunit alpha [Methylotenera mobilis
          JLW8]
 gi|253983628|gb|ACT48486.1| integration host factor, alpha subunit [Methylotenera mobilis
          JLW8]
          Length = 97

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 56/90 (62%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+++L   + ++ GL+++++   V   F E+  +   G+++K+S F  F ++QK  R 
Sbjct: 2  TLTKAELADLLYEQVGLNKREAKDMVEAFFEEVRTALEAGDSVKLSGFGNFELRQKSERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F AS  LK ++
Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKSKV 91


>gi|319763191|ref|YP_004127128.1| integration host factor, alpha subunit [Alicycliphilus
           denitrificans BC]
 gi|330825385|ref|YP_004388688.1| integration host factor subunit alpha [Alicycliphilus denitrificans
           K601]
 gi|317117752|gb|ADV00241.1| integration host factor, alpha subunit [Alicycliphilus
           denitrificans BC]
 gi|329310757|gb|AEB85172.1| integration host factor, alpha subunit [Alicycliphilus
           denitrificans K601]
          Length = 117

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 55/92 (59%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S  +T++ L   + +  GL++++S   V   F+ I  S V G+ +K+S F  F ++ K  
Sbjct: 19  SPALTKAQLADLLFEHIGLNKRESKDMVDAFFDLIVQSLVDGQDVKLSGFGNFQIRTKAP 78

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I+ RRVV F ASS LK++I
Sbjct: 79  RPGRNPRTGETIPIEARRVVTFHASSKLKEQI 110


>gi|312621747|ref|YP_004023360.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          kronotskyensis 2002]
 gi|312202214|gb|ADQ45541.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          kronotskyensis 2002]
          Length = 95

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 58/89 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++ +L+KSI+++ GL++KDS + +  L   I ++  +G+ +++  F TF VK++  R G
Sbjct: 1  MSKEELIKSIAEKSGLTKKDSEKALNVLLECIQEALSKGDKVQLVGFGTFEVKERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I    V VFKA  +LK+ +
Sbjct: 61 RNPQTGEEILIPATVVPVFKAGKVLKEAV 89


>gi|93007121|ref|YP_581558.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis
          K5]
 gi|123264368|sp|Q1Q8C9|IHFA_PSYCK RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|92394799|gb|ABE76074.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis
          K5]
          Length = 99

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+SD+++ +     L+R++    V   F+E+ +S + G+ +K+S F  F +K K SR 
Sbjct: 3  TLTKSDMIEHLMNHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKNSRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  RRVV FK     ++++
Sbjct: 63 GRNPKTGEPVAVSARRVVTFKTGQKFRQQV 92


>gi|332284513|ref|YP_004416424.1| integration host factor beta-subunit [Pusillimonas sp. T7-7]
 gi|330428466|gb|AEC19800.1| integration host factor beta-subunit [Pusillimonas sp. T7-7]
          Length = 106

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 53/88 (60%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T+T+++L + +    GL+++++   V T F EI DS  RG  +K+S F  F V+ K  R
Sbjct: 5  RTLTKAELAELLFDRVGLNKREAKDIVDTFFEEIRDSLARGVEVKLSGFGNFQVRDKPPR 64

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN +T + + I  RRVV F AS  LK
Sbjct: 65 PGRNPKTGEVIPIAARRVVTFHASQKLK 92


>gi|323144511|ref|ZP_08079112.1| integration host factor subunit alpha [Succinatimonas hippei YIT
          12066]
 gi|322415724|gb|EFY06457.1| integration host factor subunit alpha [Succinatimonas hippei YIT
          12066]
          Length = 94

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +TR+++ + +  ++   +  +  FV   F  I  S  RGE +K++ F  F +K K +R G
Sbjct: 3  LTRAEITERLVTKYNFPKFRAQSFVDDFFESIAKSLERGEFVKLTGFGNFELKMKTARPG 62

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T QEV I PRRV  FKA   L+ RI
Sbjct: 63 RNPKTGQEVTIAPRRVTTFKAGQKLRDRI 91


>gi|50086053|ref|YP_047563.1| integration host factor subunit alpha [Acinetobacter sp. ADP1]
 gi|81695762|sp|Q6F874|IHFA_ACIAD RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|49532029|emb|CAG69741.1| integration host factor (IHF), alpha subunit, DNA-binding
          protein, DNA replication [Acinetobacter sp. ADP1]
          Length = 97

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+   +S+   L+R+++ + V   F+EI  + + GE +K+S F  F ++ K  R 
Sbjct: 3  ALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+A    ++R+
Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRV 92


>gi|83647266|ref|YP_435701.1| integration host factor subunit alpha [Hahella chejuensis KCTC
          2396]
 gi|123753568|sp|Q2SDJ8|IHFA_HAHCH RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|83635309|gb|ABC31276.1| integration host factor, alpha subunit [Hahella chejuensis KCTC
          2396]
          Length = 100

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + + +E GL+++++   V   F+E+ D+    E +K+S F  F ++ K  R 
Sbjct: 3  ALTKADMAERLYQEVGLNKREAKEMVEAFFDEVRDALSHNEQVKLSGFGNFDLRDKKQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK ++
Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKAKV 92


>gi|192361986|ref|YP_001982984.1| integration host factor subunit alpha [Cellvibrio japonicus
          Ueda107]
 gi|190688151|gb|ACE85829.1| integration host factor, alpha subunit [Cellvibrio japonicus
          Ueda107]
          Length = 102

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL + + ++ GL+++++   V   F EI  +    E +K+S F  F ++ K  R 
Sbjct: 5  ALTKADLAEKLYEDLGLNKREAKELVELFFEEIRQALENNEEVKLSGFGNFELRDKSQRP 64

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK R+
Sbjct: 65 GRNPKTGEEIPISARRVVTFRPGQKLKARV 94


>gi|171058434|ref|YP_001790783.1| integration host factor subunit alpha [Leptothrix cholodnii SP-6]
 gi|170775879|gb|ACB34018.1| integration host factor, alpha subunit [Leptothrix cholodnii SP-6]
          Length = 113

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 11/113 (9%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + + +  GL++++S   V   F+ I ++ VRGE +K+S F  F V++K  
Sbjct: 11  TPTLTKAELAELLFERLGLNKRESKDMVEAYFDFIHEALVRGEDVKLSGFGNFQVRRKAP 70

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY 114
           R GRN +T + + I  R VV F AS  LK  +  +           T P G +
Sbjct: 71  RPGRNPRTGEAIPIRARNVVTFHASHKLKAIVQGE-----------TPPPGEF 112


>gi|149191095|ref|ZP_01869355.1| integration host factor subunit alpha [Vibrio shilonii AK1]
 gi|148835123|gb|EDL52100.1| integration host factor subunit alpha [Vibrio shilonii AK1]
          Length = 97

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ ++ G S++D+   V   F EI  S   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAENLFEKLGFSKRDAKETVEVFFEEIRKSLESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91


>gi|73666740|ref|YP_302756.1| histone-like DNA-binding protein [Ehrlichia canis str. Jake]
 gi|72393881|gb|AAZ68158.1| Histone-like bacterial DNA-binding protein [Ehrlichia canis str.
          Jake]
          Length = 100

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 61/96 (63%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++T+T+S + + I+K+ GLSR+D+   V  + +E+ ++ VR   +KISSF TF   +K 
Sbjct: 1  MTQTLTKSKIAEVINKDVGLSREDAASIVGEVLDEMINALVRDHILKISSFGTFKSYKKK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          +R+GRN +T++   I  R  V F  S ++K  I +D
Sbjct: 61 ARMGRNPKTSEAFVIKERNTVSFYPSILVKHSINND 96


>gi|71066548|ref|YP_265275.1| integration host factor subunit alpha [Psychrobacter arcticus
          273-4]
 gi|123775561|sp|Q4FQ67|IHFA_PSYA2 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|71039533|gb|AAZ19841.1| histone-like bacterial DNA-binding protein [Psychrobacter
          arcticus 273-4]
          Length = 99

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+SD+++ +     L+R++    V   F+E+ +S + G+ +K+S F  F +K K SR 
Sbjct: 3  TLTKSDMIEHLMSHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKNSRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  RRVV FK     ++++
Sbjct: 63 GRNPKTGEPVAVSARRVVTFKTGQKFRQQV 92


>gi|56416375|ref|YP_153449.1| hypothetical protein AM006 [Anaplasma marginale str. St. Maries]
 gi|222474746|ref|YP_002563161.1| presumptive integration host factor alpha-subunit (ihfA)
          [Anaplasma marginale str. Florida]
 gi|254994605|ref|ZP_05276795.1| presumptive integration host factor alpha-subunit (ihfA)
          [Anaplasma marginale str. Mississippi]
 gi|255002715|ref|ZP_05277679.1| presumptive integration host factor alpha-subunit (ihfA)
          [Anaplasma marginale str. Puerto Rico]
 gi|255003844|ref|ZP_05278645.1| presumptive integration host factor alpha-subunit (ihfA)
          [Anaplasma marginale str. Virginia]
 gi|56387607|gb|AAV86194.1| hypothetical protein AM006 [Anaplasma marginale str. St. Maries]
 gi|222418882|gb|ACM48905.1| presumptive integration host factor alpha-subunit (ihfA)
          [Anaplasma marginale str. Florida]
          Length = 98

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 57/93 (61%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++T+TR+ L   I++E G+SR+D+   V  + +E+  S VRG  +KISSF TF V +K 
Sbjct: 1  MAQTLTRARLADEINREIGISREDALVLVGEILDEMVSSLVRGGLLKISSFGTFKVIRKK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R+GRN +T ++  +     V F  S  +K+ I
Sbjct: 61 ERIGRNPKTLEQFIVKEHNTVTFCPSVTMKRLI 93


>gi|121605741|ref|YP_983070.1| integration host factor subunit alpha [Polaromonas
           naphthalenivorans CJ2]
 gi|166918514|sp|A1VR71|IHFA_POLNA RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|120594710|gb|ABM38149.1| integration host factor, alpha subunit [Polaromonas
           naphthalenivorans CJ2]
          Length = 123

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 55/92 (59%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +  +T++ L + + ++ GL++++S   +   F  I D  V G+ +KIS F  F ++ K  
Sbjct: 10  TPALTKAHLAELLFEQIGLNKRESKEMIDAFFELISDRLVEGKDVKISGFGNFQIRTKAP 69

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I+ RRVV F AS  LK++I
Sbjct: 70  RPGRNPRTGEAIPIESRRVVTFHASHKLKEQI 101


>gi|315126233|ref|YP_004068236.1| integration host factor (IHF), alpha subunit, DNA-bending
          protein, DNA replication [Pseudoalteromonas sp. SM9913]
 gi|315014747|gb|ADT68085.1| integration host factor (IHF), alpha subunit, DNA-bending
          protein, DNA replication [Pseudoalteromonas sp. SM9913]
          Length = 98

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + + ++ G+++KD+   V   F EI  +  +GE IK+S F  F ++ K  R 
Sbjct: 2  ALTKADIAEHLFEKLGINKKDAKDLVEAFFEEIRSALEKGEQIKLSGFGNFDLRDKKERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRV 91


>gi|222528663|ref|YP_002572545.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          bescii DSM 6725]
 gi|222455510|gb|ACM59772.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          bescii DSM 6725]
          Length = 91

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 58/86 (67%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++ GL++KD+ + +    + + ++  +GE +++  F +F V+++  RVG
Sbjct: 1  MNKTELISAMAEKSGLTKKDAEKALNAFVDAVTEALSKGEKVQLVGFGSFEVRERAERVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+KI   +V VFKA  +LK
Sbjct: 61 RNPQTQEEIKIPATKVPVFKAGKMLK 86


>gi|169827490|ref|YP_001697648.1| DNA-binding protein HU [Lysinibacillus sphaericus C3-41]
 gi|168991978|gb|ACA39518.1| DNA-binding protein HU (DNA-binding protein II) (HB)
          [Lysinibacillus sphaericus C3-41]
          Length = 93

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 56/86 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV S+++  GLS+KD+++ V  +F+ I D+  +G+ +++  F  F V+++ +R G
Sbjct: 4  VNKTELVNSVAEAAGLSKKDASKAVEAVFDTIQDALAKGDKVQLIGFGNFEVRERAARKG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I   +V  FK    LK
Sbjct: 64 RNPQTGKEIEIAASKVPAFKPGKALK 89


>gi|77360840|ref|YP_340415.1| integration host factor (IHF), alpha subunit, DNA-bending
          protein, DNA replication [Pseudoalteromonas
          haloplanktis TAC125]
 gi|123588704|sp|Q3IIL3|IHFA_PSEHT RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|76875751|emb|CAI86972.1| integration host factor (IHF), alpha subunit, DNA-bending
          protein, DNA replication [Pseudoalteromonas
          haloplanktis TAC125]
          Length = 99

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + + ++ G+++KD+   V   F EI  +  +GE IK+S F  F ++ K  R 
Sbjct: 2  ALTKADIAEHLFEKLGINKKDAKDLVEAFFEEIRSALEKGEQIKLSGFGNFDLRDKKERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRV 91


>gi|323137325|ref|ZP_08072403.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC
           49242]
 gi|322397312|gb|EFX99835.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC
           49242]
          Length = 157

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 56/87 (64%), Gaps = 1/87 (1%)

Query: 5   ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +TR D+  +I +   G+SR+++ R V  + +E+  + V GE++K+  F +F V++K  R 
Sbjct: 27  LTRQDIALAIHRRIEGVSRREAKRIVDCVIDEMVSTLVSGESLKLHDFGSFLVREKEERS 86

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN +T   V I+ RRVVVFKAS  +K
Sbjct: 87  GRNPRTGAPVPIEARRVVVFKASPNMK 113


>gi|121610039|ref|YP_997846.1| integration host factor subunit alpha [Verminephrobacter eiseniae
           EF01-2]
 gi|121554679|gb|ABM58828.1| histone family protein DNA-binding protein [Verminephrobacter
           eiseniae EF01-2]
          Length = 108

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 57/92 (61%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +  +T++ L + +  + GL++++S   +  +F+ I  S V G+ +K+S F  F ++ K  
Sbjct: 11  TPALTKAQLAELLFDQIGLNKRESKDMIDAVFDLIAQSLVDGKDVKLSGFGNFQIRTKAP 70

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV+F ASS LK++I
Sbjct: 71  RPGRNPRTGEAIPIQARRVVIFHASSKLKEQI 102


>gi|109898808|ref|YP_662063.1| integration host factor, alpha subunit [Pseudoalteromonas
          atlantica T6c]
 gi|332306904|ref|YP_004434755.1| integration host factor, alpha subunit [Glaciecola agarilytica
          4H-3-7+YE-5]
 gi|122971862|sp|Q15SX9|IHFA_PSEA6 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|109701089|gb|ABG41009.1| integration host factor, alpha subunit [Pseudoalteromonas
          atlantica T6c]
 gi|332174233|gb|AEE23487.1| integration host factor, alpha subunit [Glaciecola agarilytica
          4H-3-7+YE-5]
          Length = 98

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ G++++D+   V   F E+ ++   GE +K+S F  F ++QK  R 
Sbjct: 2  ALTKAEMAEHLFEKLGMNKRDAKDLVEAFFEEVREALESGEQVKLSGFGNFDLRQKSERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPIKARRVVTFRPGQKLKSRV 91


>gi|120554972|ref|YP_959323.1| integration host factor subunit alpha [Marinobacter aquaeolei
          VT8]
 gi|166918510|sp|A1U2B7|IHFA_MARAV RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|120324821|gb|ABM19136.1| integration host factor, alpha subunit [Marinobacter aquaeolei
          VT8]
          Length = 100

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + + +E GL+++++   V   F+EI  +    E +K+S F  F ++ K  R 
Sbjct: 3  ALTKADMAERLYEELGLNKREAKEMVEAFFDEIRGALSHNEQVKLSGFGNFDLRDKKQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK+++
Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKQKV 92


>gi|56460501|ref|YP_155782.1| nucleoid DNA-binding protein, IHF alpha subunit [Idiomarina
          loihiensis L2TR]
 gi|81678356|sp|Q5QXL9|IHFA_IDILO RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|56179511|gb|AAV82233.1| Bacterial nucleoid DNA-binding protein, IHF alpha subunit
          [Idiomarina loihiensis L2TR]
          Length = 98

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L + +  ++G+S++D+   V   F EI  +  RGE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAELAEVLFDKYGVSKQDAKVLVEDFFEEIRVALERGEQVKLSGFGNFELRTKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV FK     K R+
Sbjct: 62 GRNPKTGEEIPISARRVVTFKPGQKFKSRV 91


>gi|330445805|ref|ZP_08309457.1| integration host factor, alpha subunit [Photobacterium leiognathi
          subsp. mandapamensis svers.1.1.]
 gi|328489996|dbj|GAA03954.1| integration host factor, alpha subunit [Photobacterium leiognathi
          subsp. mandapamensis svers.1.1.]
          Length = 98

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ +  GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAENLFENVGLSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91


>gi|308050479|ref|YP_003914045.1| histone family protein DNA-binding protein [Ferrimonas balearica
          DSM 9799]
 gi|307632669|gb|ADN76971.1| histone family protein DNA-binding protein [Ferrimonas balearica
          DSM 9799]
          Length = 96

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 50/90 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++T++DL   +     L   D+   V T F EI  +  +GE +K+S F  FH++ K  R 
Sbjct: 2  SLTKADLTAHLVDHLHLKVTDAKVLVDTFFEEIRHTLEKGEEVKLSGFGVFHLRDKNPRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E +I  RRVV F A   LK R+
Sbjct: 62 GRNPKTGEEHEITARRVVTFAAGGKLKGRV 91


>gi|323493296|ref|ZP_08098420.1| Integration host factor, alpha subunit [Vibrio brasiliensis LMG
          20546]
 gi|323312459|gb|EGA65599.1| Integration host factor, alpha subunit [Vibrio brasiliensis LMG
          20546]
          Length = 98

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ ++ G S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAENLFEKLGYSKRDAKETVEAFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91


>gi|261252635|ref|ZP_05945208.1| integration host factor alpha subunit [Vibrio orientalis CIP
          102891]
 gi|260936026|gb|EEX92015.1| integration host factor alpha subunit [Vibrio orientalis CIP
          102891]
          Length = 98

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ ++ G S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAENLFEKLGYSKRDAKETVEAFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91


>gi|15837345|ref|NP_298033.1| integration host factor subunit alpha [Xylella fastidiosa 9a5c]
 gi|14194874|sp|Q9PFD5|IHFA_XYLFA RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|9105633|gb|AAF83553.1|AE003916_7 integration host factor, alpha subunit [Xylella fastidiosa 9a5c]
          Length = 99

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 57/90 (63%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++V+ +  E GL+++++  FV T F+ + D+  +G  IK+S F  F ++ K  R 
Sbjct: 2  ALTKAEMVERLFDEVGLNKREAKEFVDTFFDLLRDALEQGRQIKLSGFGNFELRCKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  R VV F++   LK+R+
Sbjct: 62 GRNPKTGEEIPISARTVVTFRSGQKLKERV 91


>gi|312884548|ref|ZP_07744252.1| integration host factor subunit alpha [Vibrio caribbenthicus ATCC
          BAA-2122]
 gi|309367860|gb|EFP95408.1| integration host factor subunit alpha [Vibrio caribbenthicus ATCC
          BAA-2122]
          Length = 97

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ ++ G S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAENLFEKLGYSKRDAKETVEMFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91


>gi|330814088|ref|YP_004358327.1| integration host factor alpha subunit [Candidatus Pelagibacter
          sp. IMCC9063]
 gi|327487183|gb|AEA81588.1| integration host factor alpha subunit [Candidatus Pelagibacter
          sp. IMCC9063]
          Length = 100

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 57/95 (60%), Gaps = 2/95 (2%)

Query: 1  MSKT--ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          MSK   ITR  L   + +E GLS+   + FV TLF+ +  +  + + +KI+ F TF  K 
Sbjct: 1  MSKVENITRQKLYDLVFQELGLSKISCSAFVDTLFDSLIANLKKDKKVKIALFGTFSKKN 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          K SRVGRN +T +E  I  R VV FKAS +L K+I
Sbjct: 61 KKSRVGRNPKTKEEKTISSRNVVTFKASKLLIKKI 95


>gi|119472475|ref|ZP_01614574.1| integration host factor (IHF), alpha subunit, DNA-bending
          protein, DNA replication [Alteromonadales bacterium
          TW-7]
 gi|332534256|ref|ZP_08410101.1| integration host factor alpha subunit [Pseudoalteromonas
          haloplanktis ANT/505]
 gi|119444912|gb|EAW26211.1| integration host factor (IHF), alpha subunit, DNA-bending
          protein, DNA replication [Alteromonadales bacterium
          TW-7]
 gi|332036336|gb|EGI72807.1| integration host factor alpha subunit [Pseudoalteromonas
          haloplanktis ANT/505]
          Length = 99

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + + ++ G+++KD+   V   F EI  +  +GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADIAEHLFEKLGINKKDAKDLVEAFFEEIRSALEKGEQVKLSGFGNFDLRDKKERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRV 91


>gi|119897376|ref|YP_932589.1| integration host factor subunit alpha [Azoarcus sp. BH72]
 gi|189044692|sp|A1K4E7|IHFA_AZOSB RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|119669789|emb|CAL93702.1| integration host factor alpha-subunit [Azoarcus sp. BH72]
          Length = 103

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 56/93 (60%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+ T+T+++L   + +  GL+++++   V   F EI  +  RG+++K+S F  F ++ K 
Sbjct: 1  MNVTLTKAELADLLFERVGLNKREAKDMVEGFFEEIRTALERGDSVKLSGFGNFQLRDKP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T +E+ I  RRVV F AS  LK  +
Sbjct: 61 QRPGRNPKTGEEIPITARRVVTFHASQKLKAAV 93


>gi|126653367|ref|ZP_01725471.1| DNA-binding protein HU (DNA-binding protein II) [Bacillus sp.
          B14905]
 gi|299538558|ref|ZP_07051841.1| DNA-binding protein HU [Lysinibacillus fusiformis ZC1]
 gi|126589883|gb|EAZ84014.1| DNA-binding protein HU (DNA-binding protein II) [Bacillus sp.
          B14905]
 gi|298726145|gb|EFI66737.1| DNA-binding protein HU [Lysinibacillus fusiformis ZC1]
 gi|327440783|dbj|BAK17148.1| bacterial nucleoid DNA-binding protein [Solibacillus silvestris
          StLB046]
          Length = 90

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 56/86 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV S+++  GLS+KD+++ V  +F+ I D+  +G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTELVNSVAEAAGLSKKDASKAVEAVFDTIQDALAKGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I   +V  FK    LK
Sbjct: 61 RNPQTGKEIEIAASKVPAFKPGKALK 86


>gi|86136033|ref|ZP_01054612.1| integration host factor beta subunit [Roseobacter sp. MED193]
 gi|85826907|gb|EAQ47103.1| integration host factor beta subunit [Roseobacter sp. MED193]
          Length = 94

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ E   L ++D  R V T+F E+ D+  RG+ +++  F  F VKQ+ SRV
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMSRGDRVELRGFGAFSVKQRDSRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V+++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGETVQVEEKHVPFFKTGKLLRDRL 90


>gi|68171301|ref|ZP_00544701.1| Histone-like bacterial DNA-binding protein [Ehrlichia chaffeensis
          str. Sapulpa]
 gi|88657660|ref|YP_506989.1| integration host factor, alpha subunit [Ehrlichia chaffeensis
          str. Arkansas]
 gi|67999282|gb|EAM85931.1| Histone-like bacterial DNA-binding protein [Ehrlichia chaffeensis
          str. Sapulpa]
 gi|88599117|gb|ABD44586.1| integration host factor, alpha subunit [Ehrlichia chaffeensis
          str. Arkansas]
          Length = 100

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 62/96 (64%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++T+T+S + + I+++ GLSR+D++  V  + +E+ ++ V+   +KISSF TF   +K 
Sbjct: 1  MTQTLTKSKIAEVINRDVGLSREDASSVVGEILDEMLNALVKDRILKISSFGTFKSYKKK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          +R+GRN +T++E  I  R  V F  S ++K  I  D
Sbjct: 61 ARMGRNPKTSEEFVIKERYTVSFYPSILIKHSINSD 96


>gi|90410619|ref|ZP_01218635.1| integration host factor alpha subunit [Photobacterium profundum
          3TCK]
 gi|90328860|gb|EAS45144.1| integration host factor alpha subunit [Photobacterium profundum
          3TCK]
          Length = 98

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL + + +  GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAEDLFENVGLSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91


>gi|92113928|ref|YP_573856.1| integration host factor, alpha subunit [Chromohalobacter
          salexigens DSM 3043]
 gi|123387450|sp|Q1QWK1|IHFA_CHRSD RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|91797018|gb|ABE59157.1| integration host factor, alpha subunit [Chromohalobacter
          salexigens DSM 3043]
          Length = 102

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 50/92 (54%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL + +  E G S++++   V   F EI       E +K+S F  F ++ K  R 
Sbjct: 3  ALTKADLAEHLHAELGFSKREAKSMVEAFFEEIRSCLRENEQVKLSGFGNFDLRDKRERP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +E+ I  RRVV F+    LK R+ D
Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKARVED 94


>gi|260219592|emb|CBA26437.1| Integration host factor subunit alpha [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 118

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 55/95 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +  +T++ L   + ++ GL++++S   +   F+ I  S V G  +KIS F  F ++ K  
Sbjct: 19  TPALTKAQLSDLLFEQIGLNKRESKDMIDAFFDLIASSLVDGTDVKISGFGNFQIRTKAP 78

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS  LK++I D+
Sbjct: 79  RPGRNPRTGEAIPIQARRVVTFHASHKLKEQIQDE 113


>gi|259503208|ref|ZP_05746110.1| DNA-binding protein HU [Lactobacillus antri DSM 16041]
 gi|312869155|ref|ZP_07729329.1| DNA-binding protein HU [Lactobacillus oris PB013-T2-3]
 gi|259168865|gb|EEW53360.1| DNA-binding protein HU [Lactobacillus antri DSM 16041]
 gi|311095401|gb|EFQ53671.1| DNA-binding protein HU [Lactobacillus oris PB013-T2-3]
          Length = 91

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 52/84 (61%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV +++   GL++KD+T  V  +F+ I  S  +GE +++  F  F V+Q+ +R GRN
Sbjct: 4  KAELVSNVANATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT QE++I   +V  FK    LK
Sbjct: 64 PQTGQEIQIPASKVPAFKPGKALK 87


>gi|146296415|ref|YP_001180186.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          saccharolyticus DSM 8903]
 gi|145409991|gb|ABP66995.1| bacterial nucleoid protein Hbs [Caldicellulosiruptor
          saccharolyticus DSM 8903]
          Length = 95

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 57/89 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++ +LVKSI+++ GL++KDS R +  L   I ++  +G+ +++  F TF VK++  R G
Sbjct: 1  MSKEELVKSIAEKSGLTKKDSERALNVLLECIQEALSKGDKVQLVGFGTFEVKERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I    V +FKA   LK+ +
Sbjct: 61 RNPQTGEEILIPATVVPIFKAGKGLKEAV 89


>gi|262275830|ref|ZP_06053639.1| integration host factor alpha subunit [Grimontia hollisae CIP
          101886]
 gi|262219638|gb|EEY70954.1| integration host factor alpha subunit [Grimontia hollisae CIP
          101886]
          Length = 98

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ +  G+S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAENLFENVGMSKRDAKETVEAFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARV 91


>gi|74317031|ref|YP_314771.1| integration host factor subunit alpha [Thiobacillus denitrificans
          ATCC 25259]
 gi|123731845|sp|Q3SK28|IHFA_THIDA RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|74056526|gb|AAZ96966.1| integration host factor, alpha subunit [Thiobacillus
          denitrificans ATCC 25259]
          Length = 103

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 58/90 (64%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++DL + + ++ GL+++++   V + F+EI  +  +G+ +K+S F  F  ++K  R 
Sbjct: 3  TLTKADLAELLFEKVGLNKREAKDVVESFFDEIRLALEKGDIVKLSGFGNFQCREKPQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F AS  LK ++
Sbjct: 63 GRNPKTGEEMPISARRVVTFHASQKLKSQV 92


>gi|262374865|ref|ZP_06068099.1| integration host factor, alpha subunit [Acinetobacter lwoffii
          SH145]
 gi|262309878|gb|EEY91007.1| integration host factor, alpha subunit [Acinetobacter lwoffii
          SH145]
          Length = 98

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 57/93 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++   +S+   L+R+++ + V   F+EI  + + GE +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEMADHLSELTSLNRREAKQMVELFFDEISQALISGEQVKLSGFGNFELRDKRQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +E+ I  RRVV F+A    ++R+ ++
Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95


>gi|255320840|ref|ZP_05362014.1| integration host factor, alpha subunit [Acinetobacter
          radioresistens SK82]
 gi|262380267|ref|ZP_06073422.1| integration host factor, alpha subunit [Acinetobacter
          radioresistens SH164]
 gi|255302009|gb|EET81252.1| integration host factor, alpha subunit [Acinetobacter
          radioresistens SK82]
 gi|262298461|gb|EEY86375.1| integration host factor, alpha subunit [Acinetobacter
          radioresistens SH164]
          Length = 98

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 57/93 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++   +S+   L+R+++ + V   F+EI  + + GE +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEMADHLSELTSLNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +E+ I  RRVV F+A    ++R+ ++
Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95


>gi|237653680|ref|YP_002889994.1| integration host factor subunit alpha [Thauera sp. MZ1T]
 gi|237624927|gb|ACR01617.1| integration host factor, alpha subunit [Thauera sp. MZ1T]
          Length = 101

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+++L   + ++ GL+++++   V   F EI  +  RG+++K+S F  F ++ K  R 
Sbjct: 2  TLTKAELADLLFEQVGLNKREAKDMVEGFFEEIRTALERGDSVKLSGFGNFQLRDKPQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F AS  LK  +
Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKAAV 91


>gi|89074399|ref|ZP_01160881.1| integration host factor alpha subunit [Photobacterium sp. SKA34]
 gi|90579644|ref|ZP_01235453.1| integration host factor alpha subunit [Vibrio angustum S14]
 gi|89049886|gb|EAR55427.1| integration host factor alpha subunit [Photobacterium sp. SKA34]
 gi|90439218|gb|EAS64400.1| integration host factor alpha subunit [Vibrio angustum S14]
          Length = 98

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ +  GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAENLFENVGLSKRDAKDTVEVFFEEVRKALENGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91


>gi|121594735|ref|YP_986631.1| integration host factor subunit alpha [Acidovorax sp. JS42]
 gi|222110652|ref|YP_002552916.1| integration host factor subunit alpha [Acidovorax ebreus TPSY]
 gi|120606815|gb|ABM42555.1| histone family protein DNA-binding protein [Acidovorax sp. JS42]
 gi|221730096|gb|ACM32916.1| histone family protein DNA-binding protein [Acidovorax ebreus TPSY]
          Length = 116

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 54/92 (58%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S  +T++ L   + +  GL++++S   V   F+ I  S V G+ +K+S F  F ++ K  
Sbjct: 19  SPALTKAQLADLLFEHIGLNKRESKDMVDAFFDLIVQSLVDGQDVKLSGFGNFQIRTKAP 78

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS+ LK++I
Sbjct: 79  RPGRNPRTGEAIPIKARRVVTFHASTKLKEQI 110


>gi|256847159|ref|ZP_05552605.1| integration host factor, alpha subunit [Lactobacillus
          coleohominis 101-4-CHN]
 gi|256715823|gb|EEU30798.1| integration host factor, alpha subunit [Lactobacillus
          coleohominis 101-4-CHN]
          Length = 91

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 52/84 (61%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV +++   GL++KD+T  V  +F+ I  S  +GE +++  F  F V+Q+ +R GRN
Sbjct: 4  KAELVSNVASATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT QE++I   +V  FK    LK
Sbjct: 64 PQTGQEIQIPASKVPAFKPGKALK 87


>gi|323495666|ref|ZP_08100737.1| integration host factor subunit alpha [Vibrio sinaloensis DSM
          21326]
 gi|323319301|gb|EGA72241.1| integration host factor subunit alpha [Vibrio sinaloensis DSM
          21326]
          Length = 98

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ ++ G S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAENLFEKHGFSKRDAKETVEAFFEEIRKALEGGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91


>gi|221066200|ref|ZP_03542305.1| integration host factor, alpha subunit [Comamonas testosteroni
           KF-1]
 gi|220711223|gb|EED66591.1| integration host factor, alpha subunit [Comamonas testosteroni
           KF-1]
          Length = 108

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 54/98 (55%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S  +T++ L   +  E GL+++++   V   F+ I    V GE +K+S F  F ++ K  
Sbjct: 10  SPALTKAQLADLLFDEIGLNKREAKDMVDAFFDLISQKLVEGEDVKLSGFGNFQIRTKAP 69

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           R GRN +T + + I  RRVV F ASS LK+ I  +  G
Sbjct: 70  RPGRNPRTGELIPIAARRVVTFHASSKLKELIQGESSG 107


>gi|84387194|ref|ZP_00990216.1| integration host factor alpha subunit [Vibrio splendidus 12B01]
 gi|86146820|ref|ZP_01065140.1| integration host factor alpha subunit [Vibrio sp. MED222]
 gi|148975883|ref|ZP_01812672.1| integration host factor subunit alpha [Vibrionales bacterium
          SWAT-3]
 gi|218709710|ref|YP_002417331.1| Integration host factor, alpha subunit [Vibrio splendidus LGP32]
 gi|254803524|sp|B7VPF6|IHFA_VIBSL RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|84378055|gb|EAP94916.1| integration host factor alpha subunit [Vibrio splendidus 12B01]
 gi|85835470|gb|EAQ53608.1| integration host factor alpha subunit [Vibrio sp. MED222]
 gi|145964628|gb|EDK29881.1| integration host factor subunit alpha [Vibrionales bacterium
          SWAT-3]
 gi|218322729|emb|CAV18905.1| Integration host factor, alpha subunit [Vibrio splendidus LGP32]
          Length = 98

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ +  G S++D+   V   F E+  +   GE +K+S F  F +++K  R 
Sbjct: 2  ALTKADLAENLFETLGYSKRDAKETVEVFFEEVRKALENGEQVKLSGFGNFDLREKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91


>gi|262369831|ref|ZP_06063158.1| integration host factor alpha subunit [Acinetobacter johnsonii
          SH046]
 gi|262314870|gb|EEY95910.1| integration host factor alpha subunit [Acinetobacter johnsonii
          SH046]
          Length = 98

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 57/93 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++   +S+   L+R+++ + V   F+EI  + + GE +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEMADHLSELTSLNRREAKQMVELFFDEISQALISGEQVKLSGFGNFELRDKRQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +E+ I  RRVV F+A    ++R+ ++
Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95


>gi|149911612|ref|ZP_01900224.1| integration host factor alpha subunit [Moritella sp. PE36]
 gi|149805333|gb|EDM65346.1| integration host factor alpha subunit [Moritella sp. PE36]
          Length = 97

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ +++  + GLS+++S   V   F EI  S    E +KIS F  F ++ KG R 
Sbjct: 2  ALTKADIAETLFNDVGLSKRESKEMVEAFFEEIRLSLEVNEQVKISGFGNFDLRDKGERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV FK    LK ++
Sbjct: 62 GRNPKTGEDIPITARRVVTFKPGQKLKAKV 91


>gi|152996604|ref|YP_001341439.1| integration host factor subunit alpha [Marinomonas sp. MWYL1]
 gi|226709731|sp|A6VYH5|IHFA_MARMS RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|150837528|gb|ABR71504.1| integration host factor, alpha subunit [Marinomonas sp. MWYL1]
          Length = 98

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 56/95 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++T++DL +++    GLS+KD+   V   F+ +  S +  + +K+S F  F V++K  R 
Sbjct: 3  SLTKADLAENLVDSIGLSKKDAKDLVEGFFDVVRSSLIERQQVKLSGFGNFEVREKSQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +E+ I  R VV F+    LK ++ D M+
Sbjct: 63 GRNPKTGEEIPITARTVVTFRPGQKLKSKVEDYMQ 97


>gi|326795746|ref|YP_004313566.1| Integration host factor subunit alpha [Marinomonas mediterranea
          MMB-1]
 gi|326546510|gb|ADZ91730.1| Integration host factor subunit alpha [Marinomonas mediterranea
          MMB-1]
          Length = 98

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 57/95 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++T++DL +++ +  GL++KD+   V   F  I +S V  E +K+S F  F V++K  R 
Sbjct: 3  SLTKADLAENLVETIGLTKKDAKDLVEGFFQVIRESLVDREQVKLSGFGNFEVREKSQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +E+ I  R VV F+    LK ++ + M+
Sbjct: 63 GRNPKTGEEIPITARTVVTFRPGQKLKAKVENYMQ 97


>gi|262374319|ref|ZP_06067595.1| integration host factor, alpha subunit [Acinetobacter junii
          SH205]
 gi|262310877|gb|EEY91965.1| integration host factor, alpha subunit [Acinetobacter junii
          SH205]
          Length = 98

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 57/93 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++   +S+   L+R+++ + V   F+EI  + + GE +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEMADHLSELTSLNRREAKQMVELFFDEISQALIGGEQVKLSGFGNFELRDKRERP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +E+ I  RRVV F+A    ++R+ ++
Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95


>gi|264679160|ref|YP_003279067.1| integration host factor, subunit alpha [Comamonas testosteroni
           CNB-2]
 gi|262209673|gb|ACY33771.1| integration host factor, alpha subunit [Comamonas testosteroni
           CNB-2]
          Length = 108

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 54/98 (55%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S  +T++ L   +  E GL+++++   V   F+ I    V GE +K+S F  F ++ K  
Sbjct: 10  SPALTKAQLADLLFDEIGLNKREAKDMVDAFFDLISQKLVEGEDVKLSGFGNFQIRTKAP 69

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           R GRN +T + + I  RRVV F ASS LK+ I  +  G
Sbjct: 70  RPGRNPRTGELIPIAARRVVTFHASSKLKELIQGEGSG 107


>gi|260768664|ref|ZP_05877598.1| integration host factor alpha subunit [Vibrio furnissii CIP
          102972]
 gi|260616694|gb|EEX41879.1| integration host factor alpha subunit [Vibrio furnissii CIP
          102972]
 gi|315180366|gb|ADT87280.1| integration host factor subunit alpha [Vibrio furnissii NCTC
          11218]
          Length = 97

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ ++ G S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAENLFEKLGFSKRDAKETVEVFFEEIRKALEGGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARV 91


>gi|227529195|ref|ZP_03959244.1| DNA-binding protein HU [Lactobacillus vaginalis ATCC 49540]
 gi|227350920|gb|EEJ41211.1| DNA-binding protein HU [Lactobacillus vaginalis ATCC 49540]
          Length = 91

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 52/84 (61%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV +++   GL++KD+T  V  +F+ I  S  +GE +++  F  F V+Q+ +R GRN
Sbjct: 4  KAELVSNVATATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT QE++I   +V  FK    LK
Sbjct: 64 PQTGQEIQIPASKVPAFKPGKALK 87


>gi|157161173|ref|YP_001458491.1| integration host factor subunit alpha [Escherichia coli HS]
 gi|166918503|sp|A8A0Q4|IHFA_ECOHS RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|157066853|gb|ABV06108.1| integration host factor, alpha subunit [Escherichia coli HS]
          Length = 99

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  TLTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|221134660|ref|ZP_03560963.1| integration host factor, alpha subunit [Glaciecola sp. HTCC2999]
          Length = 99

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GL++KD+   V   F EI  S   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAEHLFEKVGLNKKDTKDLVEAFFEEIKVSLENGEQVKLSGFGNFDLRTKKERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV FK    LK R+
Sbjct: 62 GRNPKTGEDIPIKARRVVTFKPGQKLKSRV 91


>gi|312795978|ref|YP_004028900.1| integration host factor alpha-subunit [Burkholderia rhizoxinica HKI
           454]
 gi|312167753|emb|CBW74756.1| Integration host factor alpha-subunit [Burkholderia rhizoxinica HKI
           454]
          Length = 160

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 55/92 (59%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +  + GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 59  TPTLTKAELAELLFDQVGLNKREAKDMVEAFFEAIRDALENGESVKLSGFGNFQLRDKPQ 118

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK ++
Sbjct: 119 RPGRNPKTGEAIPIAARRVVTFHASQKLKAQV 150


>gi|27365694|ref|NP_761222.1| integration host factor subunit alpha [Vibrio vulnificus CMCP6]
 gi|37680150|ref|NP_934759.1| integration host factor subunit alpha [Vibrio vulnificus YJ016]
 gi|320156101|ref|YP_004188480.1| integration host factor subunit alpha [Vibrio vulnificus
          MO6-24/O]
 gi|33301286|sp|Q8DA35|IHFA_VIBVU RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|61213547|sp|Q7MK44|IHFA_VIBVY RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|27361843|gb|AAO10749.1| integration host factor, alpha subunit [Vibrio vulnificus CMCP6]
 gi|37198896|dbj|BAC94730.1| integration host factor, alpha subunit [Vibrio vulnificus YJ016]
 gi|319931413|gb|ADV86277.1| integration host factor alpha subunit [Vibrio vulnificus
          MO6-24/O]
          Length = 95

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ ++ G S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAENLFEKLGFSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARV 91


>gi|163739054|ref|ZP_02146467.1| integration host factor beta subunit [Phaeobacter gallaeciensis
          BS107]
 gi|163741705|ref|ZP_02149095.1| integration host factor subunit beta [Phaeobacter gallaeciensis
          2.10]
 gi|254476014|ref|ZP_05089400.1| integration host factor, beta subunit [Ruegeria sp. R11]
 gi|161384878|gb|EDQ09257.1| integration host factor subunit beta [Phaeobacter gallaeciensis
          2.10]
 gi|161387859|gb|EDQ12215.1| integration host factor beta subunit [Phaeobacter gallaeciensis
          BS107]
 gi|214030257|gb|EEB71092.1| integration host factor, beta subunit [Ruegeria sp. R11]
          Length = 94

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ E   L ++D  R V T+F E+ D+  RG+ +++  F  F VKQ+ +RV
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMARGDRVELRGFGAFSVKQRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRL 90


>gi|78188542|ref|YP_378880.1| histone-like DNA-binding protein [Chlorobium chlorochromatii
          CaD3]
 gi|78170741|gb|ABB27837.1| Histone-like DNA-binding protein [Chlorobium chlorochromatii
          CaD3]
          Length = 102

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 58/99 (58%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M  T T++DLV  I+ + GL++ ++   V  LF  I +S   G  I+I  F +F+++QK 
Sbjct: 1  MGNTTTKADLVAVIAHKTGLTKNETEAVVDGLFESIIESLKAGRRIEIRGFGSFNIRQKN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           R  RN +T + V++DP++V  FK S   K  + + ++G
Sbjct: 61 FRKARNPRTGESVEVDPKQVPAFKISKEFKLAVSESLKG 99


>gi|114319923|ref|YP_741606.1| integration host factor subunit alpha [Alkalilimnicola ehrlichii
          MLHE-1]
 gi|122312214|sp|Q0AAM1|IHFA_ALHEH RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|114226317|gb|ABI56116.1| integration host factor, alpha subunit [Alkalilimnicola ehrlichii
          MLHE-1]
          Length = 101

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + + +E GL+++++   V + F EI  +   G  +K+S F  F ++ K  R 
Sbjct: 2  ALTKADMAERLFEEVGLNKREAKELVESFFEEIRQALEDGVPVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEEIPISARRVVTFRPGQKLKSRV 91


>gi|323143441|ref|ZP_08078124.1| DNA-binding protein HU-beta [Succinatimonas hippei YIT 12066]
 gi|322416726|gb|EFY07377.1| DNA-binding protein HU-beta [Succinatimonas hippei YIT 12066]
          Length = 91

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S LV SI+K+ GLS KDS   +      + D+  +G++I +  F TF V+ + +RVG
Sbjct: 1  MNKSQLVSSIAKQSGLSLKDSNAALNAFLETVKDTLAKGDSISLVGFGTFLVRDRAARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +EVKI   +V  FKA    K ++
Sbjct: 61 RNPRTKEEVKIPAVKVPAFKAGKPFKDKV 89


>gi|23099247|ref|NP_692713.1| non-specific DNA-binding protein [Oceanobacillus iheyensis
          HTE831]
 gi|22777476|dbj|BAC13748.1| non-specific DNA-binding protein [Oceanobacillus iheyensis
          HTE831]
          Length = 90

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 54/86 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV +++++  LS+KD+T+ V  +F  + DS   GE +++  F  F V+++ +R G
Sbjct: 1  MNKTDLVNAVAEKSELSKKDATKAVDAVFESVMDSLKNGEKVQLIGFGNFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I   +V  FK    LK
Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALK 86


>gi|328912279|gb|AEB63875.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Bacillus
          amyloliquefaciens LL3]
          Length = 91

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 56/86 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + + V +++ E G+++K++T  V  +F  + ++  +GE+IKI    TF V+++ +R G
Sbjct: 1  MNKIEFVGAVANELGVTKKEATPNVEGVFKVLSETLAKGESIKIPGVGTFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN+QT +E++I   +VV FK +  LK
Sbjct: 61 RNIQTGEEIEIPASKVVKFKPAKALK 86


>gi|296444587|ref|ZP_06886551.1| histone family protein DNA-binding protein [Methylosinus
           trichosporium OB3b]
 gi|296257855|gb|EFH04918.1| histone family protein DNA-binding protein [Methylosinus
           trichosporium OB3b]
          Length = 141

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 57/88 (64%), Gaps = 1/88 (1%)

Query: 3   KTITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +T+TR+ L +++ S    LSR ++ + +   F EI D+ VRGE +K+ SF +F+V+ K  
Sbjct: 38  RTLTRAALREAVYSCCPTLSRAEARQILDATFEEISDALVRGEPVKLRSFGSFNVRAKRE 97

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSIL 89
           RVGRN +T  E  I  R+V+ FKAS +L
Sbjct: 98  RVGRNPKTGVEAPICSRKVLTFKASPVL 125


>gi|260772974|ref|ZP_05881890.1| integration host factor alpha subunit [Vibrio metschnikovii CIP
          69.14]
 gi|260612113|gb|EEX37316.1| integration host factor alpha subunit [Vibrio metschnikovii CIP
          69.14]
          Length = 98

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ ++ G S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAENLFEKLGFSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKSERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91


>gi|296133003|ref|YP_003640250.1| histone family protein DNA-binding protein [Thermincola sp. JR]
 gi|296031581|gb|ADG82349.1| histone family protein DNA-binding protein [Thermincola potens
          JR]
          Length = 94

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 1/87 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T++DLV  ++++   L +KD  + V  +F  I ++  RGE  +   F TF VKQ+ +R 
Sbjct: 1  MTKTDLVAQVAEKVSNLKKKDCEKAVNAVFQSIQEALARGEKAQFIGFGTFEVKQRKARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN QT +E+KI   +V VFKA   LK
Sbjct: 61 GRNPQTGKEIKIPASKVPVFKAGKALK 87


>gi|83588958|ref|YP_428967.1| nucleoid protein Hbs [Moorella thermoacetica ATCC 39073]
 gi|83571872|gb|ABC18424.1| bacterial nucleoid protein Hbs [Moorella thermoacetica ATCC
          39073]
          Length = 91

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 55/86 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+ S++++  L++KD+ + V  +   I ++  +GE +++  F TF +K++ +RVG
Sbjct: 1  MNKMDLIASVAEKTDLTKKDAEKVVNAVLASIEEALAQGEKVQLVGFGTFEIKERAARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E++I   R  VFKA   LK
Sbjct: 61 RNPRTGEEIQIAATRAPVFKAGKALK 86


>gi|28199777|ref|NP_780091.1| integration host factor subunit alpha [Xylella fastidiosa
          Temecula1]
 gi|71275161|ref|ZP_00651448.1| Integration host factor, alpha subunit [Xylella fastidiosa Dixon]
 gi|71898242|ref|ZP_00680416.1| Integration host factor, alpha subunit [Xylella fastidiosa Ann-1]
 gi|71901128|ref|ZP_00683234.1| Integration host factor, alpha subunit [Xylella fastidiosa Ann-1]
 gi|170731152|ref|YP_001776585.1| integration host factor subunit alpha [Xylella fastidiosa M12]
 gi|182682527|ref|YP_001830687.1| integration host factor subunit alpha [Xylella fastidiosa M23]
 gi|32129614|sp|Q87AB7|IHFA_XYLFT RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709761|sp|B2I9P2|IHFA_XYLF2 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709762|sp|B0U5D7|IHFA_XYLFM RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|28057898|gb|AAO29740.1| integration host factor, alpha subunit [Xylella fastidiosa
          Temecula1]
 gi|71163970|gb|EAO13685.1| Integration host factor, alpha subunit [Xylella fastidiosa Dixon]
 gi|71729092|gb|EAO31217.1| Integration host factor, alpha subunit [Xylella fastidiosa Ann-1]
 gi|71731981|gb|EAO34038.1| Integration host factor, alpha subunit [Xylella fastidiosa Ann-1]
 gi|167965945|gb|ACA12955.1| integration host factor, alpha subunit [Xylella fastidiosa M12]
 gi|182632637|gb|ACB93413.1| integration host factor, alpha subunit [Xylella fastidiosa M23]
 gi|307578805|gb|ADN62774.1| integration host factor subunit alpha [Xylella fastidiosa subsp.
          fastidiosa GB514]
          Length = 99

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 57/90 (63%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++V+ +  E GL+++++  FV   F+ + D+  +G+ IK+S F  F ++ K  R 
Sbjct: 2  ALTKAEMVERLFDEVGLNKREAKEFVDAFFDLLRDALEQGKEIKLSGFGNFELRCKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  R VV F++   LK+R+
Sbjct: 62 GRNPKTGEEIPISARTVVTFRSGQKLKERV 91


>gi|49075042|gb|AAT49447.1| PA2738 [synthetic construct]
          Length = 101

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ K + +E GL+++++   V   F EI  +    E +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEIAKRLYEELGLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK R+
Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARV 92


>gi|264677561|ref|YP_003277467.1| integration host factor subunit beta [Comamonas testosteroni
          CNB-2]
 gi|299532471|ref|ZP_07045862.1| integration host factor, beta subunit [Comamonas testosteroni
          S44]
 gi|262208073|gb|ACY32171.1| integration host factor, beta subunit [Comamonas testosteroni
          CNB-2]
 gi|298719556|gb|EFI60522.1| integration host factor, beta subunit [Comamonas testosteroni
          S44]
          Length = 106

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDLV+ ++ +FG L+++D+ + V T+ + + D+ VRG  I+I  F +F +  +  R+
Sbjct: 1  MTRSDLVEELAAQFGQLNQRDAEQAVKTILDAVSDALVRGHRIEIRGFGSFAINHRQPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V++  +RV  FK    L++ +
Sbjct: 61 GRNPRSGESVQVPSKRVPHFKPGKALREAV 90


>gi|94264269|ref|ZP_01288063.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|94266795|ref|ZP_01290460.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|94268979|ref|ZP_01291342.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|93451393|gb|EAT02249.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|93452538|gb|EAT03124.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|93455314|gb|EAT05521.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
          Length = 97

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 56/89 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +TR DL K+I+++ G S++ +   V  +F ++ D+ +  E IK+  F TF+V+ K  R G
Sbjct: 6  LTRKDLAKAINEQMGFSQRSAADLVDVVFEQLKDTLMAEEPIKLVQFGTFNVRHKSPRQG 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   ++I  R ++ F+ S I+++RI
Sbjct: 66 RNPRTGDPMEITKRSMISFRPSKIVRERI 94


>gi|57238839|ref|YP_179975.1| integration host factor alpha-subunit [Ehrlichia ruminantium str.
          Welgevonden]
 gi|58578769|ref|YP_196981.1| integration host factor alpha-subunit [Ehrlichia ruminantium str.
          Welgevonden]
 gi|58616828|ref|YP_196027.1| integration host factor alpha-subunit [Ehrlichia ruminantium str.
          Gardel]
 gi|57160918|emb|CAH57823.1| putative integration host factor alpha-subunit [Ehrlichia
          ruminantium str. Welgevonden]
 gi|58416440|emb|CAI27553.1| Integration host factor alpha-subunit [Ehrlichia ruminantium str.
          Gardel]
 gi|58417395|emb|CAI26599.1| Integration host factor alpha-subunit [Ehrlichia ruminantium str.
          Welgevonden]
          Length = 99

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++T+T+S + + I+++ GLSR+D+   V  + +E+ ++  +   +KISSF TF   +K 
Sbjct: 1  MTETLTKSKIAEVINRDIGLSREDAASIVGEILDEMINALAKDRILKISSFGTFKSYKKK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          +R+GRN +T +E  I     V F  S ++K  I DD
Sbjct: 61 ARIGRNPKTAEEFIIKEHNTVSFYPSILVKHSINDD 96


>gi|296112369|ref|YP_003626307.1| integration host factor subunit alpha [Moraxella catarrhalis RH4]
 gi|295920063|gb|ADG60414.1| integration host factor subunit alpha [Moraxella catarrhalis RH4]
 gi|326561877|gb|EGE12212.1| integration host factor subunit alpha [Moraxella catarrhalis
          7169]
 gi|326563312|gb|EGE13579.1| integration host factor subunit alpha [Moraxella catarrhalis
          46P47B1]
 gi|326563427|gb|EGE13692.1| integration host factor subunit alpha [Moraxella catarrhalis
          12P80B1]
 gi|326565966|gb|EGE16127.1| integration host factor subunit alpha [Moraxella catarrhalis
          103P14B1]
 gi|326568900|gb|EGE18969.1| integration host factor subunit alpha [Moraxella catarrhalis BC1]
 gi|326569200|gb|EGE19261.1| integration host factor subunit alpha [Moraxella catarrhalis BC7]
 gi|326571873|gb|EGE21878.1| integration host factor subunit alpha [Moraxella catarrhalis BC8]
 gi|326575385|gb|EGE25310.1| integration host factor subunit alpha [Moraxella catarrhalis
          101P30B1]
 gi|326576526|gb|EGE26434.1| integration host factor subunit alpha [Moraxella catarrhalis
          CO72]
 gi|326577997|gb|EGE27861.1| integration host factor subunit alpha [Moraxella catarrhalis
          O35E]
          Length = 98

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 50/90 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+V  ++    L+R+ + + V   F EI  S  +G  +K+S F  F +K K  R 
Sbjct: 3  ALTKADMVDELTIRLRLTRQQARKLVDGFFEEISQSLAQGHEVKLSGFGNFELKDKKPRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V I  RRVV FKA   L+  I
Sbjct: 63 GRNPKTGESVPIQARRVVTFKAGQKLRGWI 92


>gi|299533562|ref|ZP_07046938.1| integration host factor subunit alpha [Comamonas testosteroni S44]
 gi|298718468|gb|EFI59449.1| integration host factor subunit alpha [Comamonas testosteroni S44]
          Length = 108

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 54/98 (55%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S  +T++ L   +  E GL+++++   V   F+ I    V GE +K+S F  F ++ K  
Sbjct: 10  SPALTKAQLADLLFDEIGLNKREAKDMVDAFFDLISQKLVDGEDVKLSGFGNFQIRTKAP 69

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           R GRN +T + + I  RRVV F ASS LK+ I  +  G
Sbjct: 70  RPGRNPRTGELIPIAARRVVTFHASSKLKELIQGESSG 107


>gi|304310704|ref|YP_003810302.1| Integration host factor alpha subunit [gamma proteobacterium
          HdN1]
 gi|301796437|emb|CBL44645.1| Integration host factor alpha subunit [gamma proteobacterium
          HdN1]
          Length = 100

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL + + +E GL+++++   V   F+EI     + E +K+S F  F ++ K  R 
Sbjct: 3  ALTKADLAERLFEELGLNKREAKEMVELFFDEIRVCLEQNEHVKLSGFGNFDLRNKRERP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK+R+
Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKQRV 92


>gi|221068236|ref|ZP_03544341.1| integration host factor, beta subunit [Comamonas testosteroni
          KF-1]
 gi|220713259|gb|EED68627.1| integration host factor, beta subunit [Comamonas testosteroni
          KF-1]
          Length = 107

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDLV+ ++ +FG L+++D+ + V T+ + + D+ VRG  I+I  F +F +  +  R+
Sbjct: 1  MTRSDLVEELAAQFGQLNQRDAEQAVKTILDAVSDALVRGHRIEIRGFGSFAINHRQPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V++  +RV  FK    L++ +
Sbjct: 61 GRNPRSGESVQVPSKRVPHFKPGKALREAV 90


>gi|254509429|ref|ZP_05121509.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          16]
 gi|219547647|gb|EED24692.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          16]
          Length = 98

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ ++ G S++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAENLFEKHGFSKRDAKETVEAFFEEVRKALEGGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91


>gi|149374483|ref|ZP_01892257.1| integration host factor, alpha subunit [Marinobacter algicola
          DG893]
 gi|149361186|gb|EDM49636.1| integration host factor, alpha subunit [Marinobacter algicola
          DG893]
 gi|311693968|gb|ADP96841.1| integration host factor, alpha subunit [marine bacterium HP15]
          Length = 100

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +E GL+++++   V   F+EI  +    E +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEMAERLYEELGLNKREAKEMVEAFFDEIRGALSHNEQVKLSGFGNFDLRDKKQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK+++
Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKQKV 92


>gi|88799977|ref|ZP_01115548.1| integration host factor alpha subunit [Reinekea sp. MED297]
 gi|88777255|gb|EAR08459.1| integration host factor alpha subunit [Reinekea sp. MED297]
          Length = 100

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 51/87 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++   + +E GL+++++   V   F EI +S V  E +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMADRLYEELGLNKREAKEMVEIFFEEIRESLVHNEQVKLSGFGNFDLRDKRQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T +E+ I  RRVV F+    LK
Sbjct: 62 GRNPKTGEEIPISARRVVTFRPGQKLK 88


>gi|15641235|ref|NP_230867.1| integration host factor subunit alpha [Vibrio cholerae O1 biovar
          El Tor str. N16961]
 gi|121591560|ref|ZP_01678819.1| integration host factor, alpha subunit [Vibrio cholerae 2740-80]
 gi|147673436|ref|YP_001216792.1| integration host factor subunit alpha [Vibrio cholerae O395]
 gi|153801913|ref|ZP_01956499.1| integration host factor, alpha subunit [Vibrio cholerae MZO-3]
 gi|153831069|ref|ZP_01983736.1| integration host factor, alpha subunit [Vibrio cholerae 623-39]
 gi|227081394|ref|YP_002809945.1| integration host factor, alpha subunit [Vibrio cholerae M66-2]
 gi|229505185|ref|ZP_04394695.1| integration host factor alpha subunit [Vibrio cholerae BX 330286]
 gi|229511144|ref|ZP_04400623.1| integration host factor alpha subunit [Vibrio cholerae B33]
 gi|229515602|ref|ZP_04405061.1| integration host factor alpha subunit [Vibrio cholerae TMA 21]
 gi|229518262|ref|ZP_04407706.1| integration host factor alpha subunit [Vibrio cholerae RC9]
 gi|229521341|ref|ZP_04410760.1| integration host factor alpha subunit [Vibrio cholerae TM
          11079-80]
 gi|229525828|ref|ZP_04415233.1| integration host factor alpha subunit [Vibrio cholerae bv.
          albensis VL426]
 gi|229529691|ref|ZP_04419081.1| integration host factor alpha subunit [Vibrio cholerae 12129(1)]
 gi|229608205|ref|YP_002878853.1| integration host factor subunit alpha [Vibrio cholerae MJ-1236]
 gi|254848347|ref|ZP_05237697.1| integration host factor subunit alpha [Vibrio cholerae MO10]
 gi|255745625|ref|ZP_05419573.1| integration host factor alpha subunit [Vibrio cholera CIRS 101]
 gi|262159099|ref|ZP_06030211.1| integration host factor alpha subunit [Vibrio cholerae INDRE
          91/1]
 gi|262169457|ref|ZP_06037149.1| integration host factor alpha subunit [Vibrio cholerae RC27]
 gi|297578821|ref|ZP_06940749.1| integration host factor subunit alpha [Vibrio cholerae RC385]
 gi|298498680|ref|ZP_07008487.1| integration host factor, alpha subunit [Vibrio cholerae MAK 757]
 gi|14194867|sp|Q9KSN4|IHFA_VIBCH RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|172047387|sp|A5F1W7|IHFA_VIBC3 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|254803523|sp|C3LLR8|IHFA_VIBCM RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|9655703|gb|AAF94381.1| integration host factor, alpha subunit [Vibrio cholerae O1 biovar
          El Tor str. N16961]
 gi|121546587|gb|EAX56783.1| integration host factor, alpha subunit [Vibrio cholerae 2740-80]
 gi|124122558|gb|EAY41301.1| integration host factor, alpha subunit [Vibrio cholerae MZO-3]
 gi|146315319|gb|ABQ19858.1| integration host factor, alpha subunit [Vibrio cholerae O395]
 gi|148873450|gb|EDL71585.1| integration host factor, alpha subunit [Vibrio cholerae 623-39]
 gi|227009282|gb|ACP05494.1| integration host factor, alpha subunit [Vibrio cholerae M66-2]
 gi|227013139|gb|ACP09349.1| integration host factor, alpha subunit [Vibrio cholerae O395]
 gi|229333465|gb|EEN98951.1| integration host factor alpha subunit [Vibrio cholerae 12129(1)]
 gi|229339409|gb|EEO04426.1| integration host factor alpha subunit [Vibrio cholerae bv.
          albensis VL426]
 gi|229341439|gb|EEO06442.1| integration host factor alpha subunit [Vibrio cholerae TM
          11079-80]
 gi|229344977|gb|EEO09951.1| integration host factor alpha subunit [Vibrio cholerae RC9]
 gi|229347371|gb|EEO12331.1| integration host factor alpha subunit [Vibrio cholerae TMA 21]
 gi|229351109|gb|EEO16050.1| integration host factor alpha subunit [Vibrio cholerae B33]
 gi|229357408|gb|EEO22325.1| integration host factor alpha subunit [Vibrio cholerae BX 330286]
 gi|229370860|gb|ACQ61283.1| integration host factor alpha subunit [Vibrio cholerae MJ-1236]
 gi|254844052|gb|EET22466.1| integration host factor subunit alpha [Vibrio cholerae MO10]
 gi|255736700|gb|EET92097.1| integration host factor alpha subunit [Vibrio cholera CIRS 101]
 gi|262022270|gb|EEY40979.1| integration host factor alpha subunit [Vibrio cholerae RC27]
 gi|262029284|gb|EEY47936.1| integration host factor alpha subunit [Vibrio cholerae INDRE
          91/1]
 gi|297536415|gb|EFH75248.1| integration host factor subunit alpha [Vibrio cholerae RC385]
 gi|297543013|gb|EFH79063.1| integration host factor, alpha subunit [Vibrio cholerae MAK 757]
 gi|327483918|gb|AEA78325.1| Integration host factor alpha subunit [Vibrio cholerae LMA3894-4]
          Length = 98

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L +++ ++ G+S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAELAEALFEQLGMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARV 91


>gi|331007938|ref|ZP_08331000.1| Integration host factor alpha subunit [gamma proteobacterium
          IMCC1989]
 gi|330418251|gb|EGG92855.1| Integration host factor alpha subunit [gamma proteobacterium
          IMCC1989]
          Length = 106

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L + + +E G +++++   V   F EI ++    E +K+S F  F ++ K  R 
Sbjct: 9  ALTKAELAEKLYEELGFNKREAKELVELFFEEIRNALESNEQVKLSGFGNFDLRDKKQRP 68

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK R+
Sbjct: 69 GRNPKTGEEIPISARRVVTFRPGQKLKARV 98


>gi|199598701|ref|ZP_03212115.1| nucleoid DNA-binding protein [Lactobacillus rhamnosus HN001]
 gi|258508386|ref|YP_003171137.1| DNA-binding protein HU [Lactobacillus rhamnosus GG]
 gi|258539597|ref|YP_003174096.1| nucleoid, histone-like DNA-binding protein HU [Lactobacillus
          rhamnosus Lc 705]
 gi|199590389|gb|EDY98481.1| nucleoid DNA-binding protein [Lactobacillus rhamnosus HN001]
 gi|257148313|emb|CAR87286.1| DNA-binding protein HU [Lactobacillus rhamnosus GG]
 gi|257151273|emb|CAR90245.1| DNA-binding protein HU [Lactobacillus rhamnosus Lc 705]
 gi|259649700|dbj|BAI41862.1| DNA-binding protein [Lactobacillus rhamnosus GG]
 gi|328462383|gb|EGF34439.1| nucleoid, histone-like DNA-binding protein HU [Lactobacillus
          rhamnosus MTCC 5462]
          Length = 91

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 53/87 (60%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++L++S++   GL++KD+T  V  +F  I DS  +G+ +++  F  F V+++ +R GRN
Sbjct: 4  KAELIESVASATGLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT  E+KI   +V  FK    LK  +
Sbjct: 64 PQTGAEIKIPASKVPAFKPGKALKDAV 90


>gi|53805111|ref|YP_113209.1| integration host factor subunit alpha [Methylococcus capsulatus
          str. Bath]
 gi|81682701|sp|Q60AY8|IHFA_METCA RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|53758872|gb|AAU93163.1| integration host factor, alpha subunit [Methylococcus capsulatus
          str. Bath]
          Length = 110

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 51/87 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+V+ +  E GL+++D+   V   F  I  S   G ++K+S F  F ++ K  R 
Sbjct: 2  ALTKADMVERLFSELGLNKRDAKELVDQFFEVIKASLESGRSVKLSGFGNFDLRDKRQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T +E+ I  RRVV FKA   LK
Sbjct: 62 GRNPKTGEEIPITARRVVTFKAGQKLK 88


>gi|145220310|ref|YP_001131019.1| histone family protein DNA-binding protein [Prosthecochloris
          vibrioformis DSM 265]
 gi|145206474|gb|ABP37517.1| histone family protein DNA-binding protein [Chlorobium
          phaeovibrioides DSM 265]
          Length = 102

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 58/99 (58%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M  T T++DLV  I+   GL++ ++   V +LF  I DS   G+ I+I  F +F+++ K 
Sbjct: 1  MGNTTTKADLVNVIAHRTGLTKNETETVVDSLFESIIDSLKAGKRIEIRGFGSFNIRYKN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           R  RN +T ++V ++P+ V  FK S   K+ + + ++G
Sbjct: 61 LRQARNPRTGEKVTVEPKNVPTFKISKEFKQAVSESLKG 99


>gi|116494867|ref|YP_806601.1| nucleoid DNA-binding protein [Lactobacillus casei ATCC 334]
 gi|191638374|ref|YP_001987540.1| Histone-like DNA-binding protein HU [Lactobacillus casei BL23]
 gi|239631540|ref|ZP_04674571.1| bacterial nucleoid protein Hbs [Lactobacillus paracasei subsp.
          paracasei 8700:2]
 gi|116105017|gb|ABJ70159.1| bacterial nucleoid protein Hbs [Lactobacillus casei ATCC 334]
 gi|190712676|emb|CAQ66682.1| Histone-like DNA-binding protein HU [Lactobacillus casei BL23]
 gi|239526005|gb|EEQ65006.1| bacterial nucleoid protein Hbs [Lactobacillus paracasei subsp.
          paracasei 8700:2]
          Length = 91

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 53/87 (60%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++L++S++   GL++KD+T  V  +F  I DS  +G+ +++  F  F V+++ +R GRN
Sbjct: 4  KAELIESVATATGLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT  E+KI   +V  FK    LK  +
Sbjct: 64 PQTGAEIKIPASKVPAFKPGKALKDAV 90


>gi|71908284|ref|YP_285871.1| integration host factor subunit alpha [Dechloromonas aromatica
          RCB]
 gi|123774328|sp|Q47CN0|IHFA2_DECAR RecName: Full=Integration host factor subunit alpha 2;
          Short=IHF-alpha 2
 gi|71847905|gb|AAZ47401.1| Integration host factor, alpha subunit [Dechloromonas aromatica
          RCB]
          Length = 100

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 53/87 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+++L   + ++ GL+++++   V   F EI ++   G+ +K+S F  F ++ K  R 
Sbjct: 2  TLTKAELADLLFEKVGLNKREAKDMVEAFFEEIRNALEVGDGVKLSGFGNFQLRDKPQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T QE+ I  RRVV F AS  LK
Sbjct: 62 GRNPKTGQEIPITARRVVTFHASQKLK 88


>gi|119386494|ref|YP_917549.1| integration host factor subunit beta [Paracoccus denitrificans
          PD1222]
 gi|166918557|sp|A1B8K9|IHFB_PARDP RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|119377089|gb|ABL71853.1| integration host factor, beta subunit [Paracoccus denitrificans
          PD1222]
          Length = 95

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ IS+E   L ++D  R V T+F EI D+  RG+ +++  F  F VK++ +R 
Sbjct: 1  MIRSELIQKISEENPHLFQRDVERIVNTVFEEIIDAMARGDRVELRGFGAFSVKKRDARQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +D + V  FK   +L++R+
Sbjct: 61 GRNPRTGETVSVDEKHVPFFKTGKLLRERL 90


>gi|268592573|ref|ZP_06126794.1| integration host factor, alpha subunit [Providencia rettgeri DSM
          1131]
 gi|291311987|gb|EFE52440.1| integration host factor, alpha subunit [Providencia rettgeri DSM
          1131]
          Length = 98

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ +++ ++ G+S++D+   V T F E+  S   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSENLFEKLGVSKRDAKDLVETFFEEVRLSLENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|212711444|ref|ZP_03319572.1| hypothetical protein PROVALCAL_02517 [Providencia alcalifaciens
          DSM 30120]
 gi|212685900|gb|EEB45428.1| hypothetical protein PROVALCAL_02517 [Providencia alcalifaciens
          DSM 30120]
          Length = 98

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ +++ ++ G+S++D+   V T F E+  S   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSENLFEKLGVSKRDAKDLVETFFEEVRLSLENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|134104519|pdb|2IIE|A Chain A, Single Chain Integration Host Factor Protein (Scihf2) In
           Complex With Dna
          Length = 204

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 56/101 (55%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S  +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  
Sbjct: 44  SGGLTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQ 103

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           R GRN +T +++ I  RRVV F+    LK R+ +   G + 
Sbjct: 104 RPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENAGGGERI 144


>gi|261344010|ref|ZP_05971655.1| integration host factor, alpha subunit [Providencia rustigianii
          DSM 4541]
 gi|282568401|gb|EFB73936.1| integration host factor, alpha subunit [Providencia rustigianii
          DSM 4541]
          Length = 98

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ G+S++D+   V T F E+  S   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEKLFEKLGVSKRDAKDLVETFFEEVRLSLENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKNRV 91


>gi|297538932|ref|YP_003674701.1| integration host factor subunit alpha [Methylotenera sp. 301]
 gi|297258279|gb|ADI30124.1| integration host factor, alpha subunit [Methylotenera sp. 301]
          Length = 97

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 56/90 (62%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+++L   + ++ GL+++++   V   F E+  +   G+++K+S F  F +++K  R 
Sbjct: 2  TLTKAELADLLYEQVGLNKREAKDMVEAFFEEVRIALEAGDSVKLSGFGNFELRKKSERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F AS  LK ++
Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKSKV 91


>gi|84683356|ref|ZP_01011259.1| integration host factor, beta subunit [Maritimibacter
          alkaliphilus HTCC2654]
 gi|84668099|gb|EAQ14566.1| integration host factor, beta subunit [Rhodobacterales bacterium
          HTCC2654]
          Length = 93

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ E   L ++D  R V T+F EI ++  RG+ +++  F  F VKQ+ +RV
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTIFEEIIEAMARGDRVELRGFGAFSVKQRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGESVDVEEKHVPFFKTGKLLRDRL 90


>gi|302878344|ref|YP_003846908.1| integration host factor, alpha subunit [Gallionella
          capsiferriformans ES-2]
 gi|302581133|gb|ADL55144.1| integration host factor, alpha subunit [Gallionella
          capsiferriformans ES-2]
          Length = 103

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 55/99 (55%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M  T+T+++L   +  + GL+++++   V T F EI     +GE++K+S F  F ++ K 
Sbjct: 1  MITTLTKAELADLLFAKVGLNKREAKDMVETFFEEIRVQLEQGESVKLSGFGNFQLRDKP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           R GRN +T +E+ I  RRVV F  S  LK  +     G
Sbjct: 61 QRPGRNPKTGKEIPISARRVVTFHPSQKLKTLVEKSYHG 99


>gi|197284918|ref|YP_002150790.1| integration host factor subunit alpha [Proteus mirabilis HI4320]
 gi|227355321|ref|ZP_03839722.1| integration host factor alpha-subunit [Proteus mirabilis ATCC
          29906]
 gi|226709739|sp|B4ETL2|IHFA_PROMH RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|194682405|emb|CAR42265.1| integration host factor alpha-subunit [Proteus mirabilis HI4320]
 gi|227164545|gb|EEI49416.1| integration host factor alpha-subunit [Proteus mirabilis ATCC
          29906]
          Length = 98

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ +++ ++ G+S++D+   V   F E+  S   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAENLFEKLGVSKRDAKDLVEAFFEEVRRSLENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|239827506|ref|YP_002950130.1| histone family protein DNA-binding protein [Geobacillus sp.
          WCH70]
 gi|239807799|gb|ACS24864.1| histone family protein DNA-binding protein [Geobacillus sp.
          WCH70]
          Length = 90

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 55/86 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ ++++  GLS+KD+T+ V  +F  I ++  +G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAETSGLSKKDATKAVDAVFESITEALRKGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I   +V  FK    LK
Sbjct: 61 RNPQTGEEMEIPASKVPAFKPGKALK 86


>gi|94310111|ref|YP_583321.1| integration host factor subunit alpha [Cupriavidus metallidurans
           CH34]
 gi|93353963|gb|ABF08052.1| integration host factor, alpha subunit 1 (IHF-alpha 1) [Cupriavidus
           metallidurans CH34]
          Length = 136

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 56/90 (62%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L + +  + GL++++S   V   F+ I ++  RG+++K+S F  F ++ K  R 
Sbjct: 39  TLTKAELAEMLFDQVGLNKRESKDMVEAFFDVIREALERGDSVKLSGFGNFQLRDKAQRP 98

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN +T + + I  RRVV F AS  LK ++
Sbjct: 99  GRNPKTGEIIPITARRVVTFHASQKLKAQV 128


>gi|291614191|ref|YP_003524348.1| integration host factor, subunit alpha [Sideroxydans
          lithotrophicus ES-1]
 gi|291584303|gb|ADE11961.1| integration host factor, alpha subunit [Sideroxydans
          lithotrophicus ES-1]
          Length = 102

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 55/96 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+++L   + ++ GL+++++   V   F EI     +GE++K+S F  F ++ K  R 
Sbjct: 3  TLTKAELADLLFEKVGLNKREAKDMVEAFFEEIRMQLEQGESVKLSGFGNFQLRDKPQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T +E+ I  RRVV F  S  LK  +  +  G
Sbjct: 63 GRNPKTGEEIPITARRVVTFHPSQKLKSMVEKNYHG 98


>gi|146282706|ref|YP_001172859.1| integration host factor subunit alpha [Pseudomonas stutzeri
          A1501]
 gi|166918518|sp|A4VM16|IHFA_PSEU5 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|145570911|gb|ABP80017.1| integration host factor, alpha subunit [Pseudomonas stutzeri
          A1501]
 gi|327481045|gb|AEA84355.1| integration host factor subunit alpha [Pseudomonas stutzeri DSM
          4166]
          Length = 100

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +E GL+++++   V   F EI  +    E +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEMAERLYEELGLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK R+
Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARV 92


>gi|270291292|ref|ZP_06197514.1| DNA-binding protein HU-beta [Pediococcus acidilactici 7_4]
 gi|304385040|ref|ZP_07367386.1| DNA-binding protein HU [Pediococcus acidilactici DSM 20284]
 gi|270280138|gb|EFA25974.1| DNA-binding protein HU-beta [Pediococcus acidilactici 7_4]
 gi|304329234|gb|EFL96454.1| DNA-binding protein HU [Pediococcus acidilactici DSM 20284]
          Length = 91

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 54/84 (64%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV++++K+ GL++KD+T  V  +F  I D   +G+ +++  F TF V+ + +R GRN
Sbjct: 4  KAELVENVAKKTGLTKKDATAAVEAVFGSIQDDLKKGDKVQLIGFGTFEVRNRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E++I   +V  FK    LK
Sbjct: 64 PQTGKEIEIAASKVPAFKPGKALK 87


>gi|194335610|ref|YP_002017404.1| histone family protein DNA-binding protein [Pelodictyon
          phaeoclathratiforme BU-1]
 gi|194308087|gb|ACF42787.1| histone family protein DNA-binding protein [Pelodictyon
          phaeoclathratiforme BU-1]
          Length = 102

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 58/98 (59%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M KT T++DLV  I+ + GL++ ++   V +LF  I DS   G+ I+I  F +F+++ K 
Sbjct: 1  MGKTTTKADLVNVIAHKTGLTKNETESVVDSLFESIIDSLKTGKRIEIRGFGSFNIRHKN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           R  RN +T ++V ++P+ V  FK S   K  + + ++
Sbjct: 61 FRQARNPRTGEKVTVEPKNVPTFKISKEFKHAVSESLK 98


>gi|301066428|ref|YP_003788451.1| nucleoid DNA-binding protein [Lactobacillus casei str. Zhang]
 gi|300438835|gb|ADK18601.1| nucleoid DNA-binding protein [Lactobacillus casei str. Zhang]
 gi|327382402|gb|AEA53878.1| DNA-binding protein HU-beta-like protein [Lactobacillus casei
          LC2W]
 gi|327385603|gb|AEA57077.1| DNA-binding protein HU-beta-like protein [Lactobacillus casei
          BD-II]
          Length = 93

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 53/87 (60%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++L++S++   GL++KD+T  V  +F  I DS  +G+ +++  F  F V+++ +R GRN
Sbjct: 6  KAELIESVATATGLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKGRN 65

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT  E+KI   +V  FK    LK  +
Sbjct: 66 PQTGAEIKIPASKVPAFKPGKALKDAV 92


>gi|325118559|emb|CBZ54110.1| putative DNA-binding protein HU [Neospora caninum Liverpool]
          Length = 221

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 53/96 (55%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S+ +TR DLV S++ E  LSR D  R V  L   I  S  +G+ + IS F +F ++++G 
Sbjct: 103 SQVVTRKDLVASVAAELQLSRADVERTVGALLRHIAASLEQGQKVSISKFGSFGLRRRGE 162

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           RV RN +T + + +       F  S +LK ++ D M
Sbjct: 163 RVARNPRTGEPLNVPATTFPTFSFSKVLKDKVRDVM 198


>gi|290475541|ref|YP_003468429.1| integration host factor (IHF) subunit alpha, DNA-bending protein,
          DNA replication [Xenorhabdus bovienii SS-2004]
 gi|289174862|emb|CBJ81663.1| integration host factor (IHF), alpha subunit, DNA-bending
          protein, DNA replication [Xenorhabdus bovienii SS-2004]
          Length = 98

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ +++ ++ G+S++D+   V   F E+  S   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSENLFEKLGISKRDAKDLVEIFFEEVRHSLENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKNRV 91


>gi|229552183|ref|ZP_04440908.1| non-specific DNA-binding protein HBsu [Lactobacillus rhamnosus
           LMS2-1]
 gi|229314485|gb|EEN80458.1| non-specific DNA-binding protein HBsu [Lactobacillus rhamnosus
           LMS2-1]
          Length = 104

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 53/87 (60%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
           +++L++S++   GL++KD+T  V  +F  I DS  +G+ +++  F  F V+++ +R GRN
Sbjct: 17  KAELIESVASATGLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKGRN 76

Query: 67  LQTNQEVKIDPRRVVVFKASSILKKRI 93
            QT  E+KI   +V  FK    LK  +
Sbjct: 77  PQTGAEIKIPASKVPAFKPGKALKDAV 103


>gi|149926883|ref|ZP_01915142.1| Integration host factor, alpha subunit [Limnobacter sp. MED105]
 gi|149824435|gb|EDM83653.1| Integration host factor, alpha subunit [Limnobacter sp. MED105]
          Length = 122

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 54/89 (60%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S ++T+++L + +    GL+++++  FV   F+EI  +   G+++K+S F  F ++ K  
Sbjct: 30  SGSLTKAELAEMLFDSLGLNKREAKDFVDAFFDEIRTTLESGDSVKLSGFGNFQLRDKPQ 89

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
           R GRN +T +E+ I  RRVV F  S  LK
Sbjct: 90  RPGRNPKTGEEIPIAARRVVTFHPSQKLK 118


>gi|26989194|ref|NP_744619.1| integration host factor subunit alpha [Pseudomonas putida KT2440]
 gi|148548427|ref|YP_001268529.1| integration host factor subunit alpha [Pseudomonas putida F1]
 gi|167034471|ref|YP_001669702.1| integration host factor subunit alpha [Pseudomonas putida GB-1]
 gi|170721157|ref|YP_001748845.1| integration host factor subunit alpha [Pseudomonas putida W619]
 gi|325276804|ref|ZP_08142506.1| integration host factor subunit alpha [Pseudomonas sp. TJI-51]
 gi|60392431|sp|P0A126|IHFA_PSEPK RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|60392432|sp|P0A127|IHFA_PSEPU RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|166918517|sp|A5W5D5|IHFA_PSEP1 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|189044704|sp|B0KKR2|IHFA_PSEPG RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709741|sp|B1J6V0|IHFA_PSEPW RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|24984034|gb|AAN68083.1|AE016440_3 integration host factor, alpha subunit [Pseudomonas putida
          KT2440]
 gi|1435199|gb|AAB04060.1| IhfA [Pseudomonas putida]
 gi|148512485|gb|ABQ79345.1| integration host factor, alpha subunit [Pseudomonas putida F1]
 gi|166860959|gb|ABY99366.1| integration host factor, alpha subunit [Pseudomonas putida GB-1]
 gi|169759160|gb|ACA72476.1| integration host factor, alpha subunit [Pseudomonas putida W619]
 gi|324098064|gb|EGB96208.1| integration host factor subunit alpha [Pseudomonas sp. TJI-51]
          Length = 100

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +E GL+++++   V   F EI  +    E +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEMAERLYEELGLNKREAKELVELFFEEIRHALEENEQVKLSGFGNFDLRDKRQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK R+
Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARV 92


>gi|78358253|ref|YP_389702.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
 gi|78220658|gb|ABB40007.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
          Length = 91

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 58/89 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LVK++++++ LS+ ++   V T F+ + ++ V G+ ++I  F +F VK+    VG
Sbjct: 1  MNKSELVKTLAEDYNLSQDEAVAVVNTFFDSVREALVAGDRVEIRGFGSFKVKEYKGYVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   VK+ P+R+ VF+A   +K+ +
Sbjct: 61 RNPKTGDSVKVSPKRLPVFRAGKEMKELV 89


>gi|153212317|ref|ZP_01948105.1| integration host factor, alpha subunit [Vibrio cholerae 1587]
 gi|258620238|ref|ZP_05715277.1| integration host factor, alpha subunit [Vibrio mimicus VM573]
 gi|258624402|ref|ZP_05719349.1| integration host factor, alpha subunit [Vibrio mimicus VM603]
 gi|262171747|ref|ZP_06039425.1| integration host factor alpha subunit [Vibrio mimicus MB-451]
 gi|124116695|gb|EAY35515.1| integration host factor, alpha subunit [Vibrio cholerae 1587]
 gi|258583249|gb|EEW08051.1| integration host factor, alpha subunit [Vibrio mimicus VM603]
 gi|258587596|gb|EEW12306.1| integration host factor, alpha subunit [Vibrio mimicus VM573]
 gi|261892823|gb|EEY38809.1| integration host factor alpha subunit [Vibrio mimicus MB-451]
          Length = 98

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L +++ ++ G+S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAELAEALFEKLGMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARV 91


>gi|40288405|gb|AAR84227.1| integration host factor alpha subunit [Pantoea stewartii subsp.
          stewartii DC283]
          Length = 99

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+C +   GE +K+S F    +  K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVCRALENGEQVKLSGFGNSDLCDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPETGEDIPITARRVVTFRPGQKLKSRV 91


>gi|126736963|ref|ZP_01752698.1| integration host factor subunit beta [Roseobacter sp. SK209-2-6]
 gi|126721548|gb|EBA18251.1| integration host factor subunit beta [Roseobacter sp. SK209-2-6]
          Length = 94

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ E   L ++D  R V T+F E+ D+  RG+ +++  F  F VKQ+ +R 
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMARGDRVELRGFGAFSVKQRDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V+++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGETVEVEEKHVPFFKTGKLLRDRL 90


>gi|308049413|ref|YP_003912979.1| integration host factor, alpha subunit [Ferrimonas balearica DSM
          9799]
 gi|307631603|gb|ADN75905.1| integration host factor, alpha subunit [Ferrimonas balearica DSM
          9799]
          Length = 101

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 51/90 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + + +  GL ++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADMAEHLIETLGLHKRDAKDVVEAFFEEIRLALETGEQVKLSGFGNFELRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK RI
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKTRI 91


>gi|218891082|ref|YP_002439948.1| integration host factor subunit alpha [Pseudomonas aeruginosa
          LESB58]
 gi|226709740|sp|B7V312|IHFA_PSEA8 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|218771307|emb|CAW27072.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
          LESB58]
          Length = 100

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +E GL+++++   V   F EI  +  + E +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEIAERLYEELGLNKREAKELVELFFEEIRQALEQNEQVKLSGFGNFDLRDKRQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK R+
Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARV 92


>gi|226941667|ref|YP_002796741.1| integration host factor subunit alpha [Laribacter hongkongensis
          HLHK9]
 gi|226716594|gb|ACO75732.1| IhfA [Laribacter hongkongensis HLHK9]
          Length = 101

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 53/87 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+++L   +  + GLS+++S   V + F EI  +   G+++K+S F  F ++ K  R 
Sbjct: 2  TLTKAELADLLFDKVGLSKRESKDMVESFFEEIRVALEEGDSVKLSGFGNFQLRDKPQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T +E+ I  RRVV F AS  LK
Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLK 88


>gi|254447100|ref|ZP_05060567.1| integration host factor, alpha subunit [gamma proteobacterium
          HTCC5015]
 gi|198263239|gb|EDY87517.1| integration host factor, alpha subunit [gamma proteobacterium
          HTCC5015]
          Length = 92

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          + + +  E GL+++++   V   F+EI ++   GE +K+S F  F +++K  R GRN +T
Sbjct: 1  MAECLFDELGLNKREAKELVELFFDEIREALAEGEDVKLSGFGNFTLREKSQRPGRNPKT 60

Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93
           +E+ I  RRVV F+    LK R+
Sbjct: 61 GEEIPISARRVVTFRPGQKLKSRV 84


>gi|120611517|ref|YP_971195.1| integration host factor subunit alpha [Acidovorax citrulli AAC00-1]
 gi|120589981|gb|ABM33421.1| histone family protein DNA-binding protein [Acidovorax citrulli
           AAC00-1]
          Length = 122

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 54/92 (58%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +  +T++ L + +  + GL++++S   +   F+ I    V G+ +KIS F  F ++ K  
Sbjct: 23  TPALTKAQLAELLFDQIGLNKRESKDMIDAFFDLIAQRLVDGQDVKISGFGNFQIRTKAP 82

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS+ LK++I
Sbjct: 83  RPGRNPRTGEAIPIQARRVVTFHASTKLKEQI 114


>gi|269139156|ref|YP_003295857.1| integration host factor, alpha subunit [Edwardsiella tarda
          EIB202]
 gi|294636235|ref|ZP_06714648.1| integration host factor, alpha subunit [Edwardsiella tarda ATCC
          23685]
 gi|267984817|gb|ACY84646.1| integration host factor, alpha subunit [Edwardsiella tarda
          EIB202]
 gi|291090470|gb|EFE23031.1| integration host factor, alpha subunit [Edwardsiella tarda ATCC
          23685]
 gi|304559080|gb|ADM41744.1| Integration host factor alpha subunit [Edwardsiella tarda FL6-60]
          Length = 98

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|254429814|ref|ZP_05043521.1| integration host factor, alpha subunit [Alcanivorax sp. DG881]
 gi|196195983|gb|EDX90942.1| integration host factor, alpha subunit [Alcanivorax sp. DG881]
          Length = 100

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + + +E GL+++++   V   F EI  S      +K+S F  F ++ K  R 
Sbjct: 3  ALTKADMAERLFEELGLNKREAKEMVEMFFEEIRHSLENNIPVKLSGFGNFDLRDKSERP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK+R+
Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKQRV 92


>gi|261211051|ref|ZP_05925341.1| integration host factor alpha subunit [Vibrio sp. RC341]
 gi|262402428|ref|ZP_06078989.1| integration host factor alpha subunit [Vibrio sp. RC586]
 gi|260840026|gb|EEX66626.1| integration host factor alpha subunit [Vibrio sp. RC341]
 gi|262351210|gb|EEZ00343.1| integration host factor alpha subunit [Vibrio sp. RC586]
          Length = 98

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L +++ ++ G+S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAELAEALFEKLGMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARV 91


>gi|259908572|ref|YP_002648928.1| integration host factor subunit alpha [Erwinia pyrifoliae Ep1/96]
 gi|224964194|emb|CAX55701.1| Integration host factor alpha-subunit (IHF-alpha) [Erwinia
          pyrifoliae Ep1/96]
 gi|283478541|emb|CAY74457.1| Integration host factor subunit alpha (IHF-alpha) [Erwinia
          pyrifoliae DSM 12163]
 gi|310767528|gb|ADP12478.1| integration host factor subunit alpha [Erwinia sp. Ejp617]
          Length = 99

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|326317193|ref|YP_004234865.1| histone family protein DNA-binding protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323374029|gb|ADX46298.1| histone family protein DNA-binding protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 121

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 54/92 (58%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +  +T++ L + +  + GL++++S   +   F+ I    V G+ +KIS F  F ++ K  
Sbjct: 22  TPALTKAQLAELLFDQIGLNKRESKDMIDAFFDLIAQRLVDGQDVKISGFGNFQIRTKAP 81

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS+ LK++I
Sbjct: 82  RPGRNPRTGEAIPIQARRVVTFHASTKLKEQI 113


>gi|284006261|emb|CBA71497.1| integration host factor alpha-subunit [Arsenophonus nasoniae]
          Length = 98

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ +S+ ++ G+S++D+   V   F E+  S   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSESLFEKLGISKRDAKDLVELFFEEVRRSLENGEQVKLSGFGNFDLRDKSQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKGRV 91


>gi|291617253|ref|YP_003519995.1| IhfA [Pantoea ananatis LMG 20103]
 gi|291152283|gb|ADD76867.1| IhfA [Pantoea ananatis LMG 20103]
 gi|327393707|dbj|BAK11129.1| integration host factor alpha- subunit IhfA [Pantoea ananatis
          AJ13355]
          Length = 100

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|317047874|ref|YP_004115522.1| integration host factor subunit alpha [Pantoea sp. At-9b]
 gi|316949491|gb|ADU68966.1| integration host factor, alpha subunit [Pantoea sp. At-9b]
          Length = 100

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|325982719|ref|YP_004295121.1| integration host factor, alpha subunit [Nitrosomonas sp. AL212]
 gi|325532238|gb|ADZ26959.1| integration host factor, alpha subunit [Nitrosomonas sp. AL212]
          Length = 98

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 55/97 (56%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T+++L   + +  GL+++++   V + + E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAELADLLFENVGLNKREAKDMVESFYEEVRTALQNGEGVKLSGFGNFQLRSKPQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T +E+ I  RRVV F AS  LK  +  +  G+
Sbjct: 62  GRNPKTGEEIPITARRVVTFHASQKLKALVEKNYHGK 98


>gi|188533971|ref|YP_001907768.1| integration host factor subunit alpha [Erwinia tasmaniensis
          Et1/99]
 gi|292488135|ref|YP_003531012.1| integration host factor subunit alpha [Erwinia amylovora
          CFBP1430]
 gi|292899346|ref|YP_003538715.1| integration host factor alpha-subunit [Erwinia amylovora ATCC
          49946]
 gi|300716465|ref|YP_003741268.1| Integration host factor alpha-subunit (IHF-alpha) [Erwinia
          billingiae Eb661]
 gi|226709728|sp|B2VEL2|IHFA_ERWT9 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|188029013|emb|CAO96881.1| Integration host factor alpha-subunit (IHF-alpha) [Erwinia
          tasmaniensis Et1/99]
 gi|291199194|emb|CBJ46308.1| integration host factor alpha-subunit [Erwinia amylovora ATCC
          49946]
 gi|291553559|emb|CBA20604.1| Integration host factor subunit alpha (IHF-alpha) [Erwinia
          amylovora CFBP1430]
 gi|299062301|emb|CAX59418.1| Integration host factor alpha-subunit (IHF-alpha) [Erwinia
          billingiae Eb661]
 gi|312172267|emb|CBX80524.1| Integration host factor subunit alpha (IHF-alpha) [Erwinia
          amylovora ATCC BAA-2158]
          Length = 99

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|152970723|ref|YP_001335832.1| integration host factor subunit alpha [Klebsiella pneumoniae
          subsp. pneumoniae MGH 78578]
 gi|206579803|ref|YP_002237980.1| integration host factor, alpha subunit [Klebsiella pneumoniae
          342]
 gi|238895229|ref|YP_002919964.1| integration host factor subunit alpha [Klebsiella pneumoniae
          NTUH-K2044]
 gi|288934890|ref|YP_003438949.1| integration host factor, subunit alpha [Klebsiella variicola
          At-22]
 gi|290509032|ref|ZP_06548403.1| integration host factor, alpha subunit [Klebsiella sp. 1_1_55]
 gi|166918509|sp|A6TAI1|IHFA_KLEP7 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709730|sp|B5XQD2|IHFA_KLEP3 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|150955572|gb|ABR77602.1| integration host factor alpha subunit [Klebsiella pneumoniae
          subsp. pneumoniae MGH 78578]
 gi|206568861|gb|ACI10637.1| integration host factor, alpha subunit [Klebsiella pneumoniae
          342]
 gi|238547546|dbj|BAH63897.1| integration host factor alpha subunit [Klebsiella pneumoniae
          subsp. pneumoniae NTUH-K2044]
 gi|288889599|gb|ADC57917.1| integration host factor, alpha subunit [Klebsiella variicola
          At-22]
 gi|289778426|gb|EFD86423.1| integration host factor, alpha subunit [Klebsiella sp. 1_1_55]
          Length = 99

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|304397622|ref|ZP_07379499.1| integration host factor, alpha subunit [Pantoea sp. aB]
 gi|308186652|ref|YP_003930783.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea
          vagans C9-1]
 gi|304354794|gb|EFM19164.1| integration host factor, alpha subunit [Pantoea sp. aB]
 gi|308057162|gb|ADO09334.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea
          vagans C9-1]
          Length = 100

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|255659240|ref|ZP_05404649.1| DNA-binding protein HU [Mitsuokella multacida DSM 20544]
 gi|260848694|gb|EEX68701.1| DNA-binding protein HU [Mitsuokella multacida DSM 20544]
          Length = 91

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 55/86 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV S++++ GL++KD+ + V  +F  I  + V G+ +++  F TF VK++ +R G
Sbjct: 1  MNKNELVASVAEKAGLTKKDAEKAVGAIFESIQQALVEGDKVQVIGFGTFEVKERSARAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +TN+ ++I   +   FKA   LK
Sbjct: 61 RNPRTNETIQIPASKNPAFKAGKALK 86


>gi|332529089|ref|ZP_08405053.1| integration host factor subunit alpha [Hylemonella gracilis ATCC
           19624]
 gi|332041312|gb|EGI77674.1| integration host factor subunit alpha [Hylemonella gracilis ATCC
           19624]
          Length = 107

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 56/92 (60%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +  +T++ L + + ++ GL++++S   +   F+ I +    G+ +KIS F  F ++ K +
Sbjct: 10  TPALTKAHLAELLFEQIGLNKRESKDMIDAFFDLIAERLTEGQDVKISGFGNFQIRTKAA 69

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I+ R+VV F AS  LK++I
Sbjct: 70  RPGRNPRTGEAIPIEARKVVTFHASHKLKEQI 101


>gi|242239477|ref|YP_002987658.1| integration host factor subunit alpha [Dickeya dadantii Ech703]
 gi|242131534|gb|ACS85836.1| integration host factor, alpha subunit [Dickeya dadantii Ech703]
          Length = 99

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|227535136|ref|ZP_03965185.1| non-specific DNA-binding protein HBsu [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227187181|gb|EEI67248.1| non-specific DNA-binding protein HBsu [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 129

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 53/87 (60%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
           +++L++S++   GL++KD+T  V  +F  I DS  +G+ +++  F  F V+++ +R GRN
Sbjct: 42  KAELIESVATATGLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKGRN 101

Query: 67  LQTNQEVKIDPRRVVVFKASSILKKRI 93
            QT  E+KI   +V  FK    LK  +
Sbjct: 102 PQTGAEIKIPASKVPAFKPGKALKDAV 128


>gi|15802124|ref|NP_288146.1| integration host factor subunit alpha [Escherichia coli O157:H7
          EDL933]
 gi|15831673|ref|NP_310446.1| integration host factor subunit alpha [Escherichia coli O157:H7
          str. Sakai]
 gi|16129668|ref|NP_416227.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli str. K-12 substr. MG1655]
 gi|24112892|ref|NP_707402.1| integration host factor subunit alpha [Shigella flexneri 2a str.
          301]
 gi|26247964|ref|NP_754004.1| integration host factor subunit alpha [Escherichia coli CFT073]
 gi|30063021|ref|NP_837192.1| integration host factor subunit alpha [Shigella flexneri 2a str.
          2457T]
 gi|74311968|ref|YP_310387.1| integration host factor subunit alpha [Shigella sonnei Ss046]
 gi|82543885|ref|YP_407832.1| integration host factor subunit alpha [Shigella boydii Sb227]
 gi|82777060|ref|YP_403409.1| integration host factor subunit alpha [Shigella dysenteriae
          Sd197]
 gi|89108552|ref|AP_002332.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli str. K-12 substr. W3110]
 gi|91210926|ref|YP_540912.1| integration host factor subunit alpha [Escherichia coli UTI89]
 gi|110641834|ref|YP_669564.1| integration host factor subunit alpha [Escherichia coli 536]
 gi|110805478|ref|YP_688998.1| integration host factor subunit alpha [Shigella flexneri 5 str.
          8401]
 gi|157159273|ref|YP_001463009.1| integration host factor subunit alpha [Escherichia coli E24377A]
 gi|168749471|ref|ZP_02774493.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4113]
 gi|168756713|ref|ZP_02781720.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4401]
 gi|168762224|ref|ZP_02787231.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4501]
 gi|168770473|ref|ZP_02795480.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4486]
 gi|168774987|ref|ZP_02799994.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4196]
 gi|168782127|ref|ZP_02807134.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4076]
 gi|168788108|ref|ZP_02813115.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC869]
 gi|168800107|ref|ZP_02825114.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC508]
 gi|170019938|ref|YP_001724892.1| integration host factor subunit alpha [Escherichia coli ATCC
          8739]
 gi|170081371|ref|YP_001730691.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli str. K-12 substr. DH10B]
 gi|170681870|ref|YP_001743536.1| integration host factor subunit alpha [Escherichia coli SMS-3-5]
 gi|170768840|ref|ZP_02903293.1| integration host factor, alpha subunit [Escherichia albertii
          TW07627]
 gi|187732420|ref|YP_001880502.1| integration host factor subunit alpha [Shigella boydii CDC
          3083-94]
 gi|188496090|ref|ZP_03003360.1| integration host factor, alpha subunit [Escherichia coli 53638]
 gi|191167868|ref|ZP_03029673.1| integration host factor, alpha subunit [Escherichia coli B7A]
 gi|191171631|ref|ZP_03033178.1| integration host factor, alpha subunit [Escherichia coli F11]
 gi|193065297|ref|ZP_03046369.1| integration host factor, alpha subunit [Escherichia coli E22]
 gi|193068941|ref|ZP_03049900.1| integration host factor, alpha subunit [Escherichia coli E110019]
 gi|194428516|ref|ZP_03061055.1| integration host factor, alpha subunit [Escherichia coli B171]
 gi|194435140|ref|ZP_03067374.1| integration host factor, alpha subunit [Shigella dysenteriae
          1012]
 gi|194438513|ref|ZP_03070602.1| integration host factor, alpha subunit [Escherichia coli 101-1]
 gi|195937396|ref|ZP_03082778.1| integration host factor subunit alpha [Escherichia coli O157:H7
          str. EC4024]
 gi|208810559|ref|ZP_03252435.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4206]
 gi|208816579|ref|ZP_03257699.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4045]
 gi|208820964|ref|ZP_03261284.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4042]
 gi|209399095|ref|YP_002270782.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4115]
 gi|209919072|ref|YP_002293156.1| integration host factor subunit alpha [Escherichia coli SE11]
 gi|215486931|ref|YP_002329362.1| integration host factor subunit alpha [Escherichia coli O127:H6
          str. E2348/69]
 gi|217328779|ref|ZP_03444860.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. TW14588]
 gi|218548716|ref|YP_002382507.1| integration host factor subunit alpha [Escherichia fergusonii
          ATCC 35469]
 gi|218554280|ref|YP_002387193.1| integration host factor subunit alpha [Escherichia coli IAI1]
 gi|218558582|ref|YP_002391495.1| integration host factor subunit alpha [Escherichia coli S88]
 gi|218689657|ref|YP_002397869.1| integration host factor subunit alpha [Escherichia coli ED1a]
 gi|218695274|ref|YP_002402941.1| integration host factor subunit alpha [Escherichia coli 55989]
 gi|218699720|ref|YP_002407349.1| integration host factor subunit alpha [Escherichia coli IAI39]
 gi|218705212|ref|YP_002412731.1| integration host factor subunit alpha [Escherichia coli UMN026]
 gi|227885866|ref|ZP_04003671.1| integration host factor subunit alpha [Escherichia coli 83972]
 gi|237705660|ref|ZP_04536141.1| integration host factor subunit alpha [Escherichia sp. 3_2_53FAA]
 gi|238900927|ref|YP_002926723.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli BW2952]
 gi|253773333|ref|YP_003036164.1| integration host factor subunit alpha [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|254161772|ref|YP_003044880.1| integration host factor subunit alpha [Escherichia coli B str.
          REL606]
 gi|254793329|ref|YP_003078166.1| integration host factor subunit alpha [Escherichia coli O157:H7
          str. TW14359]
 gi|256018094|ref|ZP_05431959.1| integration host factor subunit alpha [Shigella sp. D9]
 gi|256022624|ref|ZP_05436489.1| integration host factor subunit alpha [Escherichia sp. 4_1_40B]
 gi|260844064|ref|YP_003221842.1| integration host factor, alpha subunit [Escherichia coli O103:H2
          str. 12009]
 gi|260855578|ref|YP_003229469.1| integration host factor, alpha subunit [Escherichia coli O26:H11
          str. 11368]
 gi|260868239|ref|YP_003234641.1| integration host factor, alpha subunit [Escherichia coli O111:H-
          str. 11128]
 gi|261227795|ref|ZP_05942076.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258040|ref|ZP_05950573.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. FRIK966]
 gi|283785064|ref|YP_003364929.1| Integration host factor alpha subunit [Citrobacter rodentium
          ICC168]
 gi|291282892|ref|YP_003499710.1| Integration host factor subunit alpha [Escherichia coli O55:H7
          str. CB9615]
 gi|293405211|ref|ZP_06649203.1| integration host factor subunit alpha [Escherichia coli FVEC1412]
 gi|293410028|ref|ZP_06653604.1| integration host factor [Escherichia coli B354]
 gi|293415031|ref|ZP_06657674.1| integration host factor [Escherichia coli B185]
 gi|293446087|ref|ZP_06662509.1| integration host factor [Escherichia coli B088]
 gi|297516677|ref|ZP_06935063.1| integration host factor subunit alpha [Escherichia coli OP50]
 gi|298380854|ref|ZP_06990453.1| integration host factor subunit alpha [Escherichia coli FVEC1302]
 gi|300818351|ref|ZP_07098561.1| integration host factor, alpha subunit [Escherichia coli MS
          107-1]
 gi|300821414|ref|ZP_07101561.1| integration host factor, alpha subunit [Escherichia coli MS
          119-7]
 gi|300898500|ref|ZP_07116837.1| integration host factor, alpha subunit [Escherichia coli MS
          198-1]
 gi|300904568|ref|ZP_07122405.1| integration host factor, alpha subunit [Escherichia coli MS 84-1]
 gi|300917726|ref|ZP_07134375.1| integration host factor, alpha subunit [Escherichia coli MS
          115-1]
 gi|300924754|ref|ZP_07140696.1| integration host factor, alpha subunit [Escherichia coli MS
          182-1]
 gi|300930812|ref|ZP_07146184.1| integration host factor, alpha subunit [Escherichia coli MS
          187-1]
 gi|300938954|ref|ZP_07153655.1| integration host factor, alpha subunit [Escherichia coli MS 21-1]
 gi|300951312|ref|ZP_07165156.1| integration host factor, alpha subunit [Escherichia coli MS
          116-1]
 gi|300958601|ref|ZP_07170726.1| integration host factor, alpha subunit [Escherichia coli MS
          175-1]
 gi|300987621|ref|ZP_07178293.1| integration host factor, alpha subunit [Escherichia coli MS
          200-1]
 gi|300994425|ref|ZP_07180930.1| integration host factor, alpha subunit [Escherichia coli MS 45-1]
 gi|301025263|ref|ZP_07188828.1| integration host factor, alpha subunit [Escherichia coli MS
          196-1]
 gi|301026993|ref|ZP_07190380.1| integration host factor, alpha subunit [Escherichia coli MS 69-1]
 gi|301050951|ref|ZP_07197800.1| integration host factor, alpha subunit [Escherichia coli MS
          185-1]
 gi|301306645|ref|ZP_07212704.1| integration host factor, alpha subunit [Escherichia coli MS
          124-1]
 gi|301327442|ref|ZP_07220677.1| integration host factor, alpha subunit [Escherichia coli MS 78-1]
 gi|301647903|ref|ZP_07247680.1| integration host factor, alpha subunit [Escherichia coli MS
          146-1]
 gi|306815034|ref|ZP_07449190.1| integration host factor subunit alpha [Escherichia coli NC101]
 gi|307138372|ref|ZP_07497728.1| integration host factor subunit alpha [Escherichia coli H736]
 gi|307310717|ref|ZP_07590363.1| integration host factor, alpha subunit [Escherichia coli W]
 gi|309788459|ref|ZP_07683063.1| integration host factor, alpha subunit [Shigella dysenteriae
          1617]
 gi|309793482|ref|ZP_07687909.1| integration host factor, alpha subunit [Escherichia coli MS
          145-7]
 gi|312966915|ref|ZP_07781133.1| integration host factor, alpha subunit [Escherichia coli 2362-75]
 gi|331642310|ref|ZP_08343445.1| integration host factor, alpha subunit [Escherichia coli H736]
 gi|331647204|ref|ZP_08348298.1| integration host factor, alpha subunit [Escherichia coli M605]
 gi|331653113|ref|ZP_08354118.1| integration host factor, alpha subunit [Escherichia coli M718]
 gi|331657693|ref|ZP_08358655.1| integration host factor, alpha subunit [Escherichia coli TA206]
 gi|331663192|ref|ZP_08364102.1| integration host factor, alpha subunit [Escherichia coli TA143]
 gi|331668398|ref|ZP_08369246.1| integration host factor, alpha subunit [Escherichia coli TA271]
 gi|331673265|ref|ZP_08374033.1| integration host factor, alpha subunit [Escherichia coli TA280]
 gi|331677586|ref|ZP_08378261.1| integration host factor, alpha subunit [Escherichia coli H591]
 gi|331683219|ref|ZP_08383820.1| integration host factor, alpha subunit [Escherichia coli H299]
 gi|332279137|ref|ZP_08391550.1| integration host factor subunit alpha [Shigella sp. D9]
 gi|67466106|sp|P0A6X7|IHFA_ECOLI RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|67466109|sp|P0A6X8|IHFA_ECOL6 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|67466110|sp|P0A6X9|IHFA_ECO57 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|67466111|sp|P0A6Y0|IHFA_SHIFL RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|122958311|sp|Q0THB6|IHFA_ECOL5 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123084460|sp|Q1RB83|IHFA_ECOUT RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123342866|sp|Q0T4S2|IHFA_SHIF8 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123742132|sp|Q32FI7|IHFA_SHIDS RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123769448|sp|Q321K4|IHFA_SHIBS RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123773516|sp|Q3Z260|IHFA_SHISS RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|166918502|sp|A7ZMI0|IHFA_ECO24 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|189044701|sp|B1IPL5|IHFA_ECOLC RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226707374|sp|B7MAS3|IHFA_ECO45 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226707854|sp|B5YQ00|IHFA_ECO5E RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709722|sp|B7NT64|IHFA_ECO7I RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709723|sp|B7M1C1|IHFA_ECO8A RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709724|sp|B1XG19|IHFA_ECODH RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709725|sp|B7N550|IHFA_ECOLU RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709726|sp|B6I8Q5|IHFA_ECOSE RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709727|sp|B1LE18|IHFA_ECOSM RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709729|sp|B7LQ77|IHFA_ESCF3 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709755|sp|B2U390|IHFA_SHIB3 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|254803514|sp|B7US95|IHFA_ECO27 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|254803515|sp|B7L6I5|IHFA_ECO55 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|254803516|sp|B7MVJ1|IHFA_ECO81 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|259491530|sp|C4ZYH4|IHFA_ECOBW RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|1942275|pdb|1IHF|A Chain A, Integration Host FactorDNA COMPLEX
 gi|34811459|pdb|1OUZ|A Chain A, Crystal Structure Of A Mutant Ihf (Betae44a) Complexed
          With A Variant H' Site (T44a)
 gi|34811464|pdb|1OWF|A Chain A, Crystal Structure Of A Mutant Ihf (Betae44a) Complexed
          With The Native H' Site
 gi|34811469|pdb|1OWG|A Chain A, Crystal Structure Of Wt Ihf Complexed With An Altered H'
          Site (T44a)
 gi|119389941|pdb|2HT0|A Chain A, Ihf Bound To Doubly Nicked Dna
 gi|12515723|gb|AAG56699.1|AE005394_8 integration host factor (IHF), alpha subunit; site specific
          recombination [Escherichia coli O157:H7 str. EDL933]
 gi|26108367|gb|AAN80569.1|AE016761_144 Integration host factor alpha-subunit [Escherichia coli CFT073]
 gi|43072|emb|CAA23566.1| unnamed protein product [Escherichia coli]
 gi|146347|gb|AAA51471.1| integration host factor alpha subunit [Escherichia coli]
 gi|1742792|dbj|BAA15480.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli str. K12 substr. W3110]
 gi|1788005|gb|AAC74782.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli str. K-12 substr. MG1655]
 gi|13361886|dbj|BAB35842.1| integration host factor IHF alpha subunit [Escherichia coli
          O157:H7 str. Sakai]
 gi|24051836|gb|AAN43109.1| integration host factor (IHF), alpha subunit [Shigella flexneri
          2a str. 301]
 gi|30041270|gb|AAP16999.1| integration host factor (IHF), alpha subunit [Shigella flexneri
          2a str. 2457T]
 gi|68304092|gb|AAY89704.1| IhfA [Escherichia coli LW1655F+]
 gi|73855445|gb|AAZ88152.1| integration host factor (IHF), alpha subunit [Shigella sonnei
          Ss046]
 gi|81241208|gb|ABB61918.1| integration host factor, alpha subunit [Shigella dysenteriae
          Sd197]
 gi|81245296|gb|ABB66004.1| integration host factor, alpha subunit [Shigella boydii Sb227]
 gi|91072500|gb|ABE07381.1| integration host factor (IHF), alpha subunit [Escherichia coli
          UTI89]
 gi|110343426|gb|ABG69663.1| integration host factor alpha-subunit [Escherichia coli 536]
 gi|110615026|gb|ABF03693.1| integration host factor alpha subunit [Shigella flexneri 5 str.
          8401]
 gi|157081303|gb|ABV21011.1| integration host factor, alpha subunit [Escherichia coli E24377A]
 gi|169754866|gb|ACA77565.1| integration host factor, alpha subunit [Escherichia coli ATCC
          8739]
 gi|169889206|gb|ACB02913.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli str. K-12 substr. DH10B]
 gi|170122388|gb|EDS91319.1| integration host factor, alpha subunit [Escherichia albertii
          TW07627]
 gi|170519588|gb|ACB17766.1| integration host factor, alpha subunit [Escherichia coli SMS-3-5]
 gi|187429412|gb|ACD08686.1| integration host factor, alpha subunit [Shigella boydii CDC
          3083-94]
 gi|187769469|gb|EDU33313.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4196]
 gi|188016292|gb|EDU54414.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4113]
 gi|188491289|gb|EDU66392.1| integration host factor, alpha subunit [Escherichia coli 53638]
 gi|189000264|gb|EDU69250.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4076]
 gi|189356221|gb|EDU74640.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4401]
 gi|189360623|gb|EDU79042.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4486]
 gi|189367513|gb|EDU85929.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4501]
 gi|189371962|gb|EDU90378.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC869]
 gi|189377579|gb|EDU95995.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC508]
 gi|190902127|gb|EDV61871.1| integration host factor, alpha subunit [Escherichia coli B7A]
 gi|190907961|gb|EDV67553.1| integration host factor, alpha subunit [Escherichia coli F11]
 gi|192927091|gb|EDV81713.1| integration host factor, alpha subunit [Escherichia coli E22]
 gi|192957736|gb|EDV88180.1| integration host factor, alpha subunit [Escherichia coli E110019]
 gi|194413394|gb|EDX29677.1| integration host factor, alpha subunit [Escherichia coli B171]
 gi|194416604|gb|EDX32739.1| integration host factor, alpha subunit [Shigella dysenteriae
          1012]
 gi|194422523|gb|EDX38521.1| integration host factor, alpha subunit [Escherichia coli 101-1]
 gi|195182902|dbj|BAG66472.1| alpha subunit of integration host factor [Escherichia coli
          O111:H-]
 gi|208725075|gb|EDZ74782.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4206]
 gi|208730922|gb|EDZ79611.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4045]
 gi|208741087|gb|EDZ88769.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4042]
 gi|209160495|gb|ACI37928.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4115]
 gi|209768898|gb|ACI82761.1| integration host factor IHF alpha subunit [Escherichia coli]
 gi|209768900|gb|ACI82762.1| integration host factor IHF alpha subunit [Escherichia coli]
 gi|209768902|gb|ACI82763.1| integration host factor IHF alpha subunit [Escherichia coli]
 gi|209768904|gb|ACI82764.1| integration host factor IHF alpha subunit [Escherichia coli]
 gi|209768906|gb|ACI82765.1| integration host factor IHF alpha subunit [Escherichia coli]
 gi|209912331|dbj|BAG77405.1| integration host factor alpha subunit [Escherichia coli SE11]
 gi|215265003|emb|CAS09389.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli O127:H6 str. E2348/69]
 gi|217318126|gb|EEC26553.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. TW14588]
 gi|218352006|emb|CAU97738.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli 55989]
 gi|218356257|emb|CAQ88874.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia fergusonii ATCC 35469]
 gi|218361048|emb|CAQ98625.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli IAI1]
 gi|218365351|emb|CAR03072.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli S88]
 gi|218369706|emb|CAR17475.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli IAI39]
 gi|218427221|emb|CAR08107.2| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli ED1a]
 gi|218432309|emb|CAR13199.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli UMN026]
 gi|222033468|emb|CAP76209.1| Integration host factor subunit alpha [Escherichia coli LF82]
 gi|226900417|gb|EEH86676.1| integration host factor subunit alpha [Escherichia sp. 3_2_53FAA]
 gi|227837439|gb|EEJ47905.1| integration host factor subunit alpha [Escherichia coli 83972]
 gi|238861521|gb|ACR63519.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli BW2952]
 gi|242377435|emb|CAQ32187.1| integration host factor (IHF), alpha subunit, subunit of IHF
          transcriptional dual regulator [Escherichia coli
          BL21(DE3)]
 gi|253324377|gb|ACT28979.1| integration host factor, alpha subunit [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253973673|gb|ACT39344.1| integration host factor subunit alpha [Escherichia coli B str.
          REL606]
 gi|253977867|gb|ACT43537.1| integration host factor subunit alpha [Escherichia coli
          BL21(DE3)]
 gi|254592729|gb|ACT72090.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli O157:H7 str. TW14359]
 gi|257754227|dbj|BAI25729.1| integration host factor, alpha subunit [Escherichia coli O26:H11
          str. 11368]
 gi|257759211|dbj|BAI30708.1| integration host factor, alpha subunit [Escherichia coli O103:H2
          str. 12009]
 gi|257764595|dbj|BAI36090.1| integration host factor, alpha subunit [Escherichia coli O111:H-
          str. 11128]
 gi|260449165|gb|ACX39587.1| integration host factor, alpha subunit [Escherichia coli DH1]
 gi|281178783|dbj|BAI55113.1| integration host factor alpha subunit [Escherichia coli SE15]
 gi|281600923|gb|ADA73907.1| Integration host factor subunit alpha [Shigella flexneri 2002017]
 gi|282948518|emb|CBG88107.1| Integration host factor alpha subunit [Citrobacter rodentium
          ICC168]
 gi|284921633|emb|CBG34705.1| Integration host factor alpha subunit [Escherichia coli 042]
 gi|290762765|gb|ADD56726.1| Integration host factor subunit alpha [Escherichia coli O55:H7
          str. CB9615]
 gi|291322917|gb|EFE62345.1| integration host factor [Escherichia coli B088]
 gi|291427419|gb|EFF00446.1| integration host factor subunit alpha [Escherichia coli FVEC1412]
 gi|291432679|gb|EFF05658.1| integration host factor [Escherichia coli B185]
 gi|291470496|gb|EFF12980.1| integration host factor [Escherichia coli B354]
 gi|294490672|gb|ADE89428.1| integration host factor, alpha subunit [Escherichia coli IHE3034]
 gi|298278296|gb|EFI19810.1| integration host factor subunit alpha [Escherichia coli FVEC1302]
 gi|299880128|gb|EFI88339.1| integration host factor, alpha subunit [Escherichia coli MS
          196-1]
 gi|300297405|gb|EFJ53790.1| integration host factor, alpha subunit [Escherichia coli MS
          185-1]
 gi|300306101|gb|EFJ60621.1| integration host factor, alpha subunit [Escherichia coli MS
          200-1]
 gi|300314726|gb|EFJ64510.1| integration host factor, alpha subunit [Escherichia coli MS
          175-1]
 gi|300357852|gb|EFJ73722.1| integration host factor, alpha subunit [Escherichia coli MS
          198-1]
 gi|300395233|gb|EFJ78771.1| integration host factor, alpha subunit [Escherichia coli MS 69-1]
 gi|300403481|gb|EFJ87019.1| integration host factor, alpha subunit [Escherichia coli MS 84-1]
 gi|300406271|gb|EFJ89809.1| integration host factor, alpha subunit [Escherichia coli MS 45-1]
 gi|300415127|gb|EFJ98437.1| integration host factor, alpha subunit [Escherichia coli MS
          115-1]
 gi|300419042|gb|EFK02353.1| integration host factor, alpha subunit [Escherichia coli MS
          182-1]
 gi|300449409|gb|EFK13029.1| integration host factor, alpha subunit [Escherichia coli MS
          116-1]
 gi|300456153|gb|EFK19646.1| integration host factor, alpha subunit [Escherichia coli MS 21-1]
 gi|300461370|gb|EFK24863.1| integration host factor, alpha subunit [Escherichia coli MS
          187-1]
 gi|300525917|gb|EFK46986.1| integration host factor, alpha subunit [Escherichia coli MS
          119-7]
 gi|300528991|gb|EFK50053.1| integration host factor, alpha subunit [Escherichia coli MS
          107-1]
 gi|300838107|gb|EFK65867.1| integration host factor, alpha subunit [Escherichia coli MS
          124-1]
 gi|300845954|gb|EFK73714.1| integration host factor, alpha subunit [Escherichia coli MS 78-1]
 gi|301073960|gb|EFK88766.1| integration host factor, alpha subunit [Escherichia coli MS
          146-1]
 gi|305851682|gb|EFM52135.1| integration host factor subunit alpha [Escherichia coli NC101]
 gi|306908895|gb|EFN39391.1| integration host factor, alpha subunit [Escherichia coli W]
 gi|307553734|gb|ADN46509.1| integration host factor [Escherichia coli ABU 83972]
 gi|307626801|gb|ADN71105.1| integration host factor subunit alpha [Escherichia coli UM146]
 gi|308123069|gb|EFO60331.1| integration host factor, alpha subunit [Escherichia coli MS
          145-7]
 gi|308923841|gb|EFP69344.1| integration host factor, alpha subunit [Shigella dysenteriae
          1617]
 gi|309701936|emb|CBJ01249.1| Integration host factor alpha subunit [Escherichia coli ETEC
          H10407]
 gi|312288379|gb|EFR16281.1| integration host factor, alpha subunit [Escherichia coli 2362-75]
 gi|312946313|gb|ADR27140.1| integration host factor subunit alpha [Escherichia coli O83:H1
          str. NRG 857C]
 gi|313649266|gb|EFS13700.1| integration host factor, alpha subunit [Shigella flexneri 2a str.
          2457T]
 gi|315061017|gb|ADT75344.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli W]
 gi|315136353|dbj|BAJ43512.1| integration host factor subunit alpha [Escherichia coli DH1]
 gi|315257483|gb|EFU37451.1| integration host factor, alpha subunit [Escherichia coli MS 85-1]
 gi|315286439|gb|EFU45874.1| integration host factor, alpha subunit [Escherichia coli MS
          110-3]
 gi|315290473|gb|EFU49847.1| integration host factor, alpha subunit [Escherichia coli MS
          153-1]
 gi|315299755|gb|EFU58995.1| integration host factor, alpha subunit [Escherichia coli MS 16-3]
 gi|315618909|gb|EFU99492.1| integration host factor, alpha subunit [Escherichia coli 3431]
 gi|320173204|gb|EFW48415.1| Integration host factor alpha subunit [Shigella dysenteriae CDC
          74-1112]
 gi|320181259|gb|EFW56178.1| Integration host factor alpha subunit [Shigella boydii ATCC 9905]
 gi|320185864|gb|EFW60615.1| Integration host factor alpha subunit [Shigella flexneri CDC
          796-83]
 gi|320188400|gb|EFW63062.1| Integration host factor alpha subunit [Escherichia coli O157:H7
          str. EC1212]
 gi|320194576|gb|EFW69207.1| Integration host factor alpha subunit [Escherichia coli
          WV_060327]
 gi|320197896|gb|EFW72504.1| Integration host factor alpha subunit [Escherichia coli EC4100B]
 gi|320641561|gb|EFX10949.1| integration host factor subunit alpha [Escherichia coli O157:H7
          str. G5101]
 gi|320646920|gb|EFX15753.1| integration host factor subunit alpha [Escherichia coli O157:H-
          str. 493-89]
 gi|320652202|gb|EFX20500.1| integration host factor subunit alpha [Escherichia coli O157:H-
          str. H 2687]
 gi|320657803|gb|EFX25565.1| integration host factor subunit alpha [Escherichia coli O55:H7
          str. 3256-97 TW 07815]
 gi|320658378|gb|EFX26072.1| integration host factor subunit alpha [Escherichia coli O55:H7
          str. USDA 5905]
 gi|320668275|gb|EFX35102.1| integration host factor subunit alpha [Escherichia coli O157:H7
          str. LSU-61]
 gi|323153050|gb|EFZ39319.1| integration host factor, alpha subunit [Escherichia coli EPECa14]
 gi|323158490|gb|EFZ44506.1| integration host factor, alpha subunit [Escherichia coli E128010]
 gi|323169347|gb|EFZ55023.1| integration host factor, alpha subunit [Shigella sonnei 53G]
 gi|323175219|gb|EFZ60833.1| integration host factor, alpha subunit [Escherichia coli LT-68]
 gi|323180491|gb|EFZ66036.1| integration host factor, alpha subunit [Escherichia coli 1180]
 gi|323186271|gb|EFZ71623.1| integration host factor, alpha subunit [Escherichia coli 1357]
 gi|323186894|gb|EFZ72212.1| integration host factor, alpha subunit [Escherichia coli RN587/1]
 gi|323378411|gb|ADX50679.1| integration host factor, alpha subunit [Escherichia coli KO11]
 gi|323937315|gb|EGB33594.1| integration host protein [Escherichia coli E1520]
 gi|323940621|gb|EGB36812.1| integration host protein [Escherichia coli E482]
 gi|323948097|gb|EGB44088.1| integration host protein [Escherichia coli H120]
 gi|323952220|gb|EGB48093.1| integration host protein [Escherichia coli H252]
 gi|323956614|gb|EGB52352.1| integration host protein [Escherichia coli H263]
 gi|323962096|gb|EGB57692.1| integration host protein [Escherichia coli H489]
 gi|323968482|gb|EGB63888.1| integration host protein [Escherichia coli M863]
 gi|323973907|gb|EGB69079.1| integration host protein [Escherichia coli TA007]
 gi|323978104|gb|EGB73190.1| integration host protein [Escherichia coli TW10509]
 gi|324007099|gb|EGB76318.1| integration host factor, alpha subunit [Escherichia coli MS 57-2]
 gi|324011508|gb|EGB80727.1| integration host factor, alpha subunit [Escherichia coli MS 60-1]
 gi|324016465|gb|EGB85684.1| integration host factor, alpha subunit [Escherichia coli MS
          117-3]
 gi|324113464|gb|EGC07439.1| integration host protein [Escherichia fergusonii B253]
 gi|324119198|gb|EGC13086.1| integration host protein [Escherichia coli E1167]
 gi|325497126|gb|EGC94985.1| integration host factor subunit alpha [Escherichia fergusonii
          ECD227]
 gi|326342080|gb|EGD65861.1| Integration host factor alpha subunit [Escherichia coli O157:H7
          str. 1044]
 gi|326343632|gb|EGD67394.1| Integration host factor alpha subunit [Escherichia coli O157:H7
          str. 1125]
 gi|327252829|gb|EGE64483.1| integration host factor, alpha subunit [Escherichia coli STEC_7v]
 gi|330911517|gb|EGH40027.1| integration host factor alpha subunit [Escherichia coli AA86]
 gi|331039108|gb|EGI11328.1| integration host factor, alpha subunit [Escherichia coli H736]
 gi|331043987|gb|EGI16123.1| integration host factor, alpha subunit [Escherichia coli M605]
 gi|331049211|gb|EGI21283.1| integration host factor, alpha subunit [Escherichia coli M718]
 gi|331055941|gb|EGI27950.1| integration host factor, alpha subunit [Escherichia coli TA206]
 gi|331058991|gb|EGI30968.1| integration host factor, alpha subunit [Escherichia coli TA143]
 gi|331063592|gb|EGI35503.1| integration host factor, alpha subunit [Escherichia coli TA271]
 gi|331069463|gb|EGI40850.1| integration host factor, alpha subunit [Escherichia coli TA280]
 gi|331074046|gb|EGI45366.1| integration host factor, alpha subunit [Escherichia coli H591]
 gi|331079434|gb|EGI50631.1| integration host factor, alpha subunit [Escherichia coli H299]
 gi|332090637|gb|EGI95732.1| integration host factor, alpha subunit [Shigella boydii 5216-82]
 gi|332093969|gb|EGI99022.1| integration host factor, alpha subunit [Shigella dysenteriae
          155-74]
 gi|332096357|gb|EGJ01358.1| integration host factor, alpha subunit [Shigella boydii 3594-74]
 gi|332101489|gb|EGJ04835.1| integration host factor subunit alpha [Shigella sp. D9]
 gi|332343431|gb|AEE56765.1| integration host factor, alpha subunit IhfA [Escherichia coli
          UMNK88]
 gi|332758619|gb|EGJ88938.1| integration host factor, alpha subunit [Shigella flexneri
          2747-71]
 gi|332762548|gb|EGJ92813.1| integration host factor, alpha subunit [Shigella flexneri
          4343-70]
 gi|332767225|gb|EGJ97420.1| integration host factor, alpha subunit [Shigella flexneri
          2930-71]
 gi|333003776|gb|EGK23312.1| integration host factor, alpha subunit [Shigella flexneri VA-6]
 gi|333004230|gb|EGK23761.1| integration host factor, alpha subunit [Shigella flexneri K-218]
 gi|333006576|gb|EGK26076.1| integration host factor, alpha subunit [Shigella flexneri K-272]
 gi|333018156|gb|EGK37458.1| integration host factor, alpha subunit [Shigella flexneri K-304]
 gi|333018795|gb|EGK38088.1| integration host factor, alpha subunit [Shigella flexneri K-227]
          Length = 99

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|251789564|ref|YP_003004285.1| integration host factor subunit alpha [Dickeya zeae Ech1591]
 gi|271500486|ref|YP_003333511.1| integration host factor subunit alpha [Dickeya dadantii Ech586]
 gi|307131171|ref|YP_003883187.1| integration host factor (IHF), DNA-binding protein, subunit alpha
          [Dickeya dadantii 3937]
 gi|585306|sp|P37982|IHFA_DICD3 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|399668|emb|CAA52768.1| integration host factor alpha subunit [Erwinia chrysanthemi]
 gi|247538185|gb|ACT06806.1| integration host factor, alpha subunit [Dickeya zeae Ech1591]
 gi|270344041|gb|ACZ76806.1| integration host factor, alpha subunit [Dickeya dadantii Ech586]
 gi|306528700|gb|ADM98630.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Dickeya dadantii 3937]
 gi|1093152|prf||2103145A integration host factor
          Length = 99

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|307545110|ref|YP_003897589.1| integration host factor subunit alpha [Halomonas elongata DSM 2581]
 gi|307217134|emb|CBV42404.1| integration host factor subunit alpha [Halomonas elongata DSM 2581]
          Length = 122

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 51/90 (56%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T+++L + +  E GLS++++   V + F EI       E +K+S F  F ++ K  R 
Sbjct: 25  ALTKAELAEHLHAELGLSKREAKSMVESFFEEIRGCLRENEQVKLSGFGNFDLRDKRERP 84

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN +T +E+ I  RRVV F+    LK ++
Sbjct: 85  GRNPKTGEEIPISARRVVTFRPGQKLKSQV 114


>gi|260597643|ref|YP_003210214.1| integration host factor subunit alpha [Cronobacter turicensis
          z3032]
 gi|260216820|emb|CBA30309.1| Integration host factor subunit alpha [Cronobacter turicensis
          z3032]
          Length = 99

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|184155358|ref|YP_001843698.1| DNA-binding protein [Lactobacillus fermentum IFO 3956]
 gi|227515172|ref|ZP_03945221.1| DNA-binding protein HU [Lactobacillus fermentum ATCC 14931]
 gi|260662129|ref|ZP_05863025.1| DNA-binding protein [Lactobacillus fermentum 28-3-CHN]
 gi|183226702|dbj|BAG27218.1| DNA-binding protein [Lactobacillus fermentum IFO 3956]
 gi|227086504|gb|EEI21816.1| DNA-binding protein HU [Lactobacillus fermentum ATCC 14931]
 gi|260553512|gb|EEX26404.1| DNA-binding protein [Lactobacillus fermentum 28-3-CHN]
          Length = 91

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 52/84 (61%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV +++   GL++KD+T  V  +F+ I  S  +GE +++  F  F V+++ +R GRN
Sbjct: 4  KAELVTNVATATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT QE++I   +V  FK    LK
Sbjct: 64 PQTGQEIQIPASKVPAFKPGKALK 87


>gi|29376113|ref|NP_815267.1| DNA-binding protein HU [Enterococcus faecalis V583]
 gi|227518741|ref|ZP_03948790.1| DNA-binding protein HU [Enterococcus faecalis TX0104]
 gi|227553351|ref|ZP_03983400.1| DNA-binding protein HU [Enterococcus faecalis HH22]
 gi|229545834|ref|ZP_04434559.1| DNA-binding protein HU [Enterococcus faecalis TX1322]
 gi|229550026|ref|ZP_04438751.1| DNA-binding protein HU [Enterococcus faecalis ATCC 29200]
 gi|255972807|ref|ZP_05423393.1| DNA-binding protein II [Enterococcus faecalis T1]
 gi|255975863|ref|ZP_05426449.1| DNA-binding protein II [Enterococcus faecalis T2]
 gi|256619053|ref|ZP_05475899.1| DNA-binding protein II [Enterococcus faecalis ATCC 4200]
 gi|256762479|ref|ZP_05503059.1| DNA-binding protein II [Enterococcus faecalis T3]
 gi|256853115|ref|ZP_05558485.1| DNA-binding protein HU [Enterococcus faecalis T8]
 gi|256958970|ref|ZP_05563141.1| DNA-binding protein II [Enterococcus faecalis DS5]
 gi|256961937|ref|ZP_05566108.1| DNA-binding protein II [Enterococcus faecalis Merz96]
 gi|256965135|ref|ZP_05569306.1| DNA-binding protein II [Enterococcus faecalis HIP11704]
 gi|257079001|ref|ZP_05573362.1| DNA-binding protein II [Enterococcus faecalis JH1]
 gi|257082560|ref|ZP_05576921.1| DNA-binding protein II [Enterococcus faecalis E1Sol]
 gi|257085193|ref|ZP_05579554.1| DNA-binding protein II [Enterococcus faecalis Fly1]
 gi|257086754|ref|ZP_05581115.1| DNA-binding protein II [Enterococcus faecalis D6]
 gi|257089875|ref|ZP_05584236.1| DNA-binding protein HU [Enterococcus faecalis CH188]
 gi|257416083|ref|ZP_05593077.1| DNA-binding protein II [Enterococcus faecalis AR01/DG]
 gi|257419286|ref|ZP_05596280.1| DNA-binding protein [Enterococcus faecalis T11]
 gi|257422629|ref|ZP_05599619.1| DNA-binding protein HU [Enterococcus faecalis X98]
 gi|293383005|ref|ZP_06628923.1| DNA-binding protein HU [Enterococcus faecalis R712]
 gi|293389506|ref|ZP_06633963.1| DNA-binding protein HU [Enterococcus faecalis S613]
 gi|294781353|ref|ZP_06746696.1| DNA-binding protein HU [Enterococcus faecalis PC1.1]
 gi|300860723|ref|ZP_07106810.1| DNA-binding protein HU [Enterococcus faecalis TUSoD Ef11]
 gi|307271028|ref|ZP_07552311.1| DNA-binding protein HU [Enterococcus faecalis TX4248]
 gi|307273235|ref|ZP_07554481.1| DNA-binding protein HU [Enterococcus faecalis TX0855]
 gi|307274972|ref|ZP_07556135.1| DNA-binding protein HU [Enterococcus faecalis TX2134]
 gi|307278084|ref|ZP_07559168.1| DNA-binding protein HU [Enterococcus faecalis TX0860]
 gi|307289095|ref|ZP_07569051.1| DNA-binding protein HU [Enterococcus faecalis TX0109]
 gi|307292006|ref|ZP_07571875.1| DNA-binding protein HU [Enterococcus faecalis TX0411]
 gi|312900750|ref|ZP_07760047.1| DNA-binding protein HU [Enterococcus faecalis TX0470]
 gi|312903297|ref|ZP_07762477.1| DNA-binding protein HU [Enterococcus faecalis TX0635]
 gi|312907524|ref|ZP_07766515.1| DNA-binding protein HU [Enterococcus faecalis DAPTO 512]
 gi|312910142|ref|ZP_07768989.1| DNA-binding protein HU [Enterococcus faecalis DAPTO 516]
 gi|312951483|ref|ZP_07770379.1| DNA-binding protein HU [Enterococcus faecalis TX0102]
 gi|29343575|gb|AAO81337.1| DNA-binding protein HU [Enterococcus faecalis V583]
 gi|227073822|gb|EEI11785.1| DNA-binding protein HU [Enterococcus faecalis TX0104]
 gi|227177520|gb|EEI58492.1| DNA-binding protein HU [Enterococcus faecalis HH22]
 gi|229304832|gb|EEN70828.1| DNA-binding protein HU [Enterococcus faecalis ATCC 29200]
 gi|229309033|gb|EEN75020.1| DNA-binding protein HU [Enterococcus faecalis TX1322]
 gi|255963825|gb|EET96301.1| DNA-binding protein II [Enterococcus faecalis T1]
 gi|255968735|gb|EET99357.1| DNA-binding protein II [Enterococcus faecalis T2]
 gi|256598580|gb|EEU17756.1| DNA-binding protein II [Enterococcus faecalis ATCC 4200]
 gi|256683730|gb|EEU23425.1| DNA-binding protein II [Enterococcus faecalis T3]
 gi|256711574|gb|EEU26612.1| DNA-binding protein HU [Enterococcus faecalis T8]
 gi|256949466|gb|EEU66098.1| DNA-binding protein II [Enterococcus faecalis DS5]
 gi|256952433|gb|EEU69065.1| DNA-binding protein II [Enterococcus faecalis Merz96]
 gi|256955631|gb|EEU72263.1| DNA-binding protein II [Enterococcus faecalis HIP11704]
 gi|256987031|gb|EEU74333.1| DNA-binding protein II [Enterococcus faecalis JH1]
 gi|256990590|gb|EEU77892.1| DNA-binding protein II [Enterococcus faecalis E1Sol]
 gi|256993223|gb|EEU80525.1| DNA-binding protein II [Enterococcus faecalis Fly1]
 gi|256994784|gb|EEU82086.1| DNA-binding protein II [Enterococcus faecalis D6]
 gi|256998687|gb|EEU85207.1| DNA-binding protein HU [Enterococcus faecalis CH188]
 gi|257157911|gb|EEU87871.1| DNA-binding protein II [Enterococcus faecalis ARO1/DG]
 gi|257161114|gb|EEU91074.1| DNA-binding protein [Enterococcus faecalis T11]
 gi|257164453|gb|EEU94413.1| DNA-binding protein HU [Enterococcus faecalis X98]
 gi|291079670|gb|EFE17034.1| DNA-binding protein HU [Enterococcus faecalis R712]
 gi|291081123|gb|EFE18086.1| DNA-binding protein HU [Enterococcus faecalis S613]
 gi|294451583|gb|EFG20042.1| DNA-binding protein HU [Enterococcus faecalis PC1.1]
 gi|295112974|emb|CBL31611.1| bacterial nucleoid protein Hbs [Enterococcus sp. 7L76]
 gi|300849762|gb|EFK77512.1| DNA-binding protein HU [Enterococcus faecalis TUSoD Ef11]
 gi|306497004|gb|EFM66552.1| DNA-binding protein HU [Enterococcus faecalis TX0411]
 gi|306499804|gb|EFM69165.1| DNA-binding protein HU [Enterococcus faecalis TX0109]
 gi|306505481|gb|EFM74667.1| DNA-binding protein HU [Enterococcus faecalis TX0860]
 gi|306508420|gb|EFM77527.1| DNA-binding protein HU [Enterococcus faecalis TX2134]
 gi|306510220|gb|EFM79244.1| DNA-binding protein HU [Enterococcus faecalis TX0855]
 gi|306512526|gb|EFM81175.1| DNA-binding protein HU [Enterococcus faecalis TX4248]
 gi|310626552|gb|EFQ09835.1| DNA-binding protein HU [Enterococcus faecalis DAPTO 512]
 gi|310630449|gb|EFQ13732.1| DNA-binding protein HU [Enterococcus faecalis TX0102]
 gi|310633173|gb|EFQ16456.1| DNA-binding protein HU [Enterococcus faecalis TX0635]
 gi|311289415|gb|EFQ67971.1| DNA-binding protein HU [Enterococcus faecalis DAPTO 516]
 gi|311292231|gb|EFQ70787.1| DNA-binding protein HU [Enterococcus faecalis TX0470]
 gi|315027276|gb|EFT39208.1| DNA-binding protein HU [Enterococcus faecalis TX2137]
 gi|315029395|gb|EFT41327.1| DNA-binding protein HU [Enterococcus faecalis TX4000]
 gi|315033959|gb|EFT45891.1| DNA-binding protein HU [Enterococcus faecalis TX0017]
 gi|315036968|gb|EFT48900.1| DNA-binding protein HU [Enterococcus faecalis TX0027]
 gi|315144427|gb|EFT88443.1| DNA-binding protein HU [Enterococcus faecalis TX2141]
 gi|315147254|gb|EFT91270.1| DNA-binding protein HU [Enterococcus faecalis TX4244]
 gi|315150547|gb|EFT94563.1| DNA-binding protein HU [Enterococcus faecalis TX0012]
 gi|315152494|gb|EFT96510.1| DNA-binding protein HU [Enterococcus faecalis TX0031]
 gi|315155772|gb|EFT99788.1| DNA-binding protein HU [Enterococcus faecalis TX0043]
 gi|315158061|gb|EFU02078.1| DNA-binding protein HU [Enterococcus faecalis TX0312]
 gi|315160455|gb|EFU04472.1| DNA-binding protein HU [Enterococcus faecalis TX0645]
 gi|315164004|gb|EFU08021.1| DNA-binding protein HU [Enterococcus faecalis TX1302]
 gi|315169045|gb|EFU13062.1| DNA-binding protein HU [Enterococcus faecalis TX1341]
 gi|315169717|gb|EFU13734.1| DNA-binding protein HU [Enterococcus faecalis TX1342]
 gi|315172322|gb|EFU16339.1| DNA-binding protein HU [Enterococcus faecalis TX1346]
 gi|315575877|gb|EFU88068.1| DNA-binding protein HU [Enterococcus faecalis TX0309B]
 gi|315577717|gb|EFU89908.1| DNA-binding protein HU [Enterococcus faecalis TX0630]
 gi|315580529|gb|EFU92720.1| DNA-binding protein HU [Enterococcus faecalis TX0309A]
 gi|323480713|gb|ADX80152.1| DNA-binding protein HU 1 [Enterococcus faecalis 62]
 gi|327535122|gb|AEA93956.1| DNA-binding protein HU [Enterococcus faecalis OG1RF]
 gi|329571713|gb|EGG53394.1| DNA-binding protein HU-beta [Enterococcus faecalis TX1467]
          Length = 91

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 54/84 (64%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++L+++++   GL++KD+T  V  +F+ I ++  +GE +++  F  F V+++ +R GRN
Sbjct: 4  KAELIENVASSTGLTKKDATAAVDAVFSTIQETLAKGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT QE++I   +V  FK    LK
Sbjct: 64 PQTGQEIQIAASKVPAFKPGKALK 87


>gi|50121344|ref|YP_050511.1| integration host factor subunit alpha [Pectobacterium
          atrosepticum SCRI1043]
 gi|227111539|ref|ZP_03825195.1| integration host factor subunit alpha [Pectobacterium carotovorum
          subsp. brasiliensis PBR1692]
 gi|227327039|ref|ZP_03831063.1| integration host factor subunit alpha [Pectobacterium carotovorum
          subsp. carotovorum WPP14]
 gi|253688281|ref|YP_003017471.1| integration host factor, alpha subunit [Pectobacterium
          carotovorum subsp. carotovorum PC1]
 gi|81693249|sp|Q6D4H4|IHFA_ERWCT RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|259491532|sp|C6DFZ2|IHFA_PECCP RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|49611870|emb|CAG75319.1| integration host factor alpha-subunit [Pectobacterium
          atrosepticum SCRI1043]
 gi|251754859|gb|ACT12935.1| integration host factor, alpha subunit [Pectobacterium
          carotovorum subsp. carotovorum PC1]
          Length = 98

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|16760555|ref|NP_456172.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Typhi str. CT18]
 gi|16764690|ref|NP_460305.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Typhimurium str. LT2]
 gi|29141684|ref|NP_805026.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Typhi str. Ty2]
 gi|56413674|ref|YP_150749.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. ATCC 9150]
 gi|62179928|ref|YP_216345.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. SC-B67]
 gi|157145985|ref|YP_001453304.1| integration host factor subunit alpha [Citrobacter koseri ATCC
          BAA-895]
 gi|161614253|ref|YP_001588218.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|167551702|ref|ZP_02345456.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Saintpaul str. SARA29]
 gi|167994355|ref|ZP_02575447.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168233523|ref|ZP_02658581.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Kentucky str. CDC 191]
 gi|168239546|ref|ZP_02664604.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168240842|ref|ZP_02665774.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Heidelberg str. SL486]
 gi|168263840|ref|ZP_02685813.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Hadar str. RI_05P066]
 gi|168463260|ref|ZP_02697191.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Newport str. SL317]
 gi|168822198|ref|ZP_02834198.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194443596|ref|YP_002040596.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194447585|ref|YP_002045346.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|194469176|ref|ZP_03075160.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Kentucky str. CVM29188]
 gi|194736601|ref|YP_002114356.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. CVM19633]
 gi|197249705|ref|YP_002146698.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|197265740|ref|ZP_03165814.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Saintpaul str. SARA23]
 gi|197362598|ref|YP_002142235.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. AKU_12601]
 gi|198244241|ref|YP_002215787.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|200390104|ref|ZP_03216715.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Virchow str. SL491]
 gi|204927937|ref|ZP_03219138.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205352938|ref|YP_002226739.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Gallinarum str. 287/91]
 gi|207857154|ref|YP_002243805.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Enteritidis str. P125109]
 gi|213022625|ref|ZP_03337072.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
 gi|213160963|ref|ZP_03346673.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Typhi str. E00-7866]
 gi|213421813|ref|ZP_03354879.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Typhi str. E01-6750]
 gi|213426326|ref|ZP_03359076.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Typhi str. E02-1180]
 gi|213586389|ref|ZP_03368215.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-0664]
 gi|213618534|ref|ZP_03372360.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-2068]
 gi|213857558|ref|ZP_03384529.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Typhi str. M223]
 gi|224584149|ref|YP_002637947.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Paratyphi C strain RKS4594]
 gi|238910845|ref|ZP_04654682.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Tennessee str. CDC07-0191]
 gi|289806332|ref|ZP_06536961.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Typhi str. AG3]
 gi|60392433|sp|P0A1S0|IHFA_SALTY RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|60392434|sp|P0A1S1|IHFA_SALTI RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|75505782|sp|Q57PU7|IHFA_SALCH RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|81677883|sp|Q5PH86|IHFA_SALPA RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|166918501|sp|A8AHA5|IHFA_CITK8 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|189044706|sp|A9N236|IHFA_SALPB RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709745|sp|B5F7F6|IHFA_SALA4 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709746|sp|B5FJA2|IHFA_SALDC RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709747|sp|B5QVW2|IHFA_SALEP RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709748|sp|B5RAW7|IHFA_SALG2 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709749|sp|B4TGH7|IHFA_SALHS RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709750|sp|B4T4N4|IHFA_SALNS RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709751|sp|B5BA36|IHFA_SALPK RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709752|sp|B4TUF6|IHFA_SALSV RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|254803520|sp|C0Q640|IHFA_SALPC RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|25294356|pir||AD0705 integration host factor alpha-chain [imported] - Salmonella
          enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16419858|gb|AAL20264.1| integration host factor (IHF), alpha subunit [Salmonella enterica
          subsp. enterica serovar Typhimurium str. LT2]
 gi|16502851|emb|CAD02013.1| integration host factor alpha-subunit [Salmonella enterica subsp.
          enterica serovar Typhi]
 gi|29137312|gb|AAO68875.1| integration host factor alpha-subunit [Salmonella enterica subsp.
          enterica serovar Typhi str. Ty2]
 gi|56127931|gb|AAV77437.1| integration host factor alpha-subunit [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. ATCC 9150]
 gi|62127561|gb|AAX65264.1| integration host factor (IHF), alpha subunit [Salmonella enterica
          subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|157083190|gb|ABV12868.1| hypothetical protein CKO_01739 [Citrobacter koseri ATCC BAA-895]
 gi|161363617|gb|ABX67385.1| hypothetical protein SPAB_01998 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|194402259|gb|ACF62481.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Newport str. SL254]
 gi|194405889|gb|ACF66108.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Heidelberg str. SL476]
 gi|194455540|gb|EDX44379.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Kentucky str. CVM29188]
 gi|194712103|gb|ACF91324.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195634129|gb|EDX52481.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Newport str. SL317]
 gi|197094075|emb|CAR59575.1| integration host factor alpha-subunit [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. AKU_12601]
 gi|197213408|gb|ACH50805.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Agona str. SL483]
 gi|197243995|gb|EDY26615.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Saintpaul str. SARA23]
 gi|197287774|gb|EDY27164.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Schwarzengrund str. SL480]
 gi|197938757|gb|ACH76090.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Dublin str. CT_02021853]
 gi|199602549|gb|EDZ01095.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Virchow str. SL491]
 gi|204323279|gb|EDZ08475.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205272719|emb|CAR37635.1| Integration host factor alpha-subunit [Salmonella enterica subsp.
          enterica serovar Gallinarum str. 287/91]
 gi|205323612|gb|EDZ11451.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Saintpaul str. SARA29]
 gi|205327760|gb|EDZ14524.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205332324|gb|EDZ19088.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Kentucky str. CDC 191]
 gi|205339460|gb|EDZ26224.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Heidelberg str. SL486]
 gi|205341281|gb|EDZ28045.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205347544|gb|EDZ34175.1| integration host factor, alpha subunit [Salmonella enterica
          subsp. enterica serovar Hadar str. RI_05P066]
 gi|206708957|emb|CAR33287.1| Integration host factor alpha-subunit [Salmonella enterica subsp.
          enterica serovar Enteritidis str. P125109]
 gi|224468676|gb|ACN46506.1| integration host factor alpha subunit [Salmonella enterica subsp.
          enterica serovar Paratyphi C strain RKS4594]
 gi|261246548|emb|CBG24358.1| integration host factor alpha-subunit [Salmonella enterica subsp.
          enterica serovar Typhimurium str. D23580]
 gi|267993220|gb|ACY88105.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Typhimurium str. 14028S]
 gi|301157876|emb|CBW17370.1| integration host factor alpha-subunit [Salmonella enterica subsp.
          enterica serovar Typhimurium str. SL1344]
 gi|312912324|dbj|BAJ36298.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Typhimurium str. T000240]
 gi|320086181|emb|CBY95955.1| Integration host factor subunit alpha IHF-alpha [Salmonella
          enterica subsp. enterica serovar Weltevreden str.
          2007-60-3289-1]
 gi|321223967|gb|EFX49030.1| Integration host factor alpha subunit [Salmonella enterica subsp.
          enterica serovar Typhimurium str. TN061786]
 gi|322616724|gb|EFY13633.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315996572]
 gi|322620017|gb|EFY16890.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-1]
 gi|322622327|gb|EFY19172.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-3]
 gi|322627851|gb|EFY24641.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-4]
 gi|322633051|gb|EFY29794.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-1]
 gi|322636703|gb|EFY33406.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-2]
 gi|322641271|gb|EFY37912.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. 531954]
 gi|322645260|gb|EFY41789.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650201|gb|EFY46615.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. OH_2009072675]
 gi|322655775|gb|EFY52077.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660101|gb|EFY56340.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. 19N]
 gi|322665332|gb|EFY61520.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. 81038-01]
 gi|322669590|gb|EFY65738.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673516|gb|EFY69618.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. 414877]
 gi|322677442|gb|EFY73506.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. 366867]
 gi|322679893|gb|EFY75932.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. 413180]
 gi|322687365|gb|EFY83337.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. 446600]
 gi|322714394|gb|EFZ05965.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. A50]
 gi|323129610|gb|ADX17040.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Typhimurium str. 4/74]
 gi|323192483|gb|EFZ77713.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609458-1]
 gi|323198662|gb|EFZ83763.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556150-1]
 gi|323204090|gb|EFZ89104.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609460]
 gi|323208709|gb|EFZ93647.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. 507440-20]
 gi|323210222|gb|EFZ95121.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556152]
 gi|323217685|gb|EGA02400.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB101509-0077]
 gi|323220078|gb|EGA04545.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB102109-0047]
 gi|323223495|gb|EGA07821.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB110209-0055]
 gi|323229487|gb|EGA13610.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB111609-0052]
 gi|323232710|gb|EGA16806.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009083312]
 gi|323240251|gb|EGA24295.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009085258]
 gi|323242761|gb|EGA26782.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315731156]
 gi|323249077|gb|EGA32996.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2009159199]
 gi|323252784|gb|EGA36621.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008282]
 gi|323255606|gb|EGA39362.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008283]
 gi|323260117|gb|EGA43742.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008284]
 gi|323267119|gb|EGA50604.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008285]
 gi|323271557|gb|EGA54978.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008287]
 gi|326623534|gb|EGE29879.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Dublin str. 3246]
 gi|326628011|gb|EGE34354.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Gallinarum str. 9]
 gi|332988227|gb|AEF07210.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Typhimurium str. UK-1]
          Length = 99

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|239814882|ref|YP_002943792.1| histone family protein DNA-binding protein [Variovorax paradoxus
           S110]
 gi|239801459|gb|ACS18526.1| histone family protein DNA-binding protein [Variovorax paradoxus
           S110]
          Length = 123

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 54/92 (58%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +  +T++ L   + ++ GL++++S   V   F+ I +S + G  +KIS F  F ++ K  
Sbjct: 13  TPALTKAHLADLLFEQIGLNKRESKDMVEAFFDLIANSLIEGTDVKISGFGNFQIRVKAP 72

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRV  F AS+ LK++I
Sbjct: 73  RPGRNPRTGEAIPIGERRVATFHASAKLKEQI 104


>gi|331701407|ref|YP_004398366.1| histone family protein DNA-binding protein [Lactobacillus
          buchneri NRRL B-30929]
 gi|329128750|gb|AEB73303.1| histone family protein DNA-binding protein [Lactobacillus
          buchneri NRRL B-30929]
          Length = 91

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV +++   GL++KD+T  V  +F  I  S  +G+ +++  F  F V+Q+ +R GRN
Sbjct: 4  KAELVTNVAAATGLTKKDATSAVDAVFESIQASLAKGDKVQLIGFGNFEVRQRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT QE++I   +V  FK    LK
Sbjct: 64 PQTGQEIQIPASKVPAFKPGKALK 87


>gi|312969741|ref|ZP_07783924.1| integration host factor, alpha subunit [Escherichia coli 1827-70]
 gi|310338026|gb|EFQ03115.1| integration host factor, alpha subunit [Escherichia coli 1827-70]
          Length = 99

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|311279402|ref|YP_003941633.1| integration host factor, alpha subunit [Enterobacter cloacae
          SCF1]
 gi|308748597|gb|ADO48349.1| integration host factor, alpha subunit [Enterobacter cloacae
          SCF1]
          Length = 99

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|229018912|ref|ZP_04175755.1| DNA-binding protein HU [Bacillus cereus AH1273]
 gi|229098192|ref|ZP_04229139.1| DNA-binding protein HU [Bacillus cereus Rock3-29]
 gi|229104286|ref|ZP_04234955.1| DNA-binding protein HU [Bacillus cereus Rock3-28]
 gi|229117210|ref|ZP_04246588.1| DNA-binding protein HU [Bacillus cereus Rock1-3]
 gi|228666110|gb|EEL21574.1| DNA-binding protein HU [Bacillus cereus Rock1-3]
 gi|228678984|gb|EEL33192.1| DNA-binding protein HU [Bacillus cereus Rock3-28]
 gi|228685090|gb|EEL39021.1| DNA-binding protein HU [Bacillus cereus Rock3-29]
 gi|228742355|gb|EEL92512.1| DNA-binding protein HU [Bacillus cereus AH1273]
          Length = 93

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 58/91 (63%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K + +++L+K++++   +S+K++T  V T+   I ++   GE +++  F TF V+++ +R
Sbjct: 2  KNMNKTELIKNVAQNAEISQKEATVVVQTVVESITNALAAGEKVQLIGFGTFEVRERAAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN QT +E++I   +V  FKA   LK+ +
Sbjct: 62 TGRNPQTGEEMQIAASKVPAFKAGKELKEAV 92


>gi|156934283|ref|YP_001438199.1| integration host factor subunit alpha [Cronobacter sakazakii ATCC
          BAA-894]
 gi|166918505|sp|A7MNY7|IHFA_ENTS8 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|156532537|gb|ABU77363.1| hypothetical protein ESA_02114 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 99

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|163734570|ref|ZP_02142009.1| integration host factor subunit beta [Roseobacter litoralis Och
          149]
 gi|161392063|gb|EDQ16393.1| integration host factor subunit beta [Roseobacter litoralis Och
          149]
          Length = 94

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ E   L ++D  R V T+F E+ D+  RG+ +++  F  F VK++ +RV
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTIFEEVTDAMARGDRVELRGFGAFSVKKRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRL 90


>gi|15597934|ref|NP_251428.1| integration host factor subunit alpha [Pseudomonas aeruginosa
          PAO1]
 gi|107102269|ref|ZP_01366187.1| hypothetical protein PaerPA_01003326 [Pseudomonas aeruginosa
          PACS2]
 gi|116050728|ref|YP_790451.1| integration host factor subunit alpha [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|152984628|ref|YP_001347876.1| integration host factor subunit alpha [Pseudomonas aeruginosa
          PA7]
 gi|254235716|ref|ZP_04929039.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
          C3719]
 gi|254241191|ref|ZP_04934513.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
          2192]
 gi|296388799|ref|ZP_06878274.1| integration host factor subunit alpha [Pseudomonas aeruginosa
          PAb1]
 gi|313107807|ref|ZP_07793981.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
          39016]
 gi|2495247|sp|Q51472|IHFA_PSEAE RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|122259853|sp|Q02NN5|IHFA_PSEAB RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|166918515|sp|A6V491|IHFA_PSEA7 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|9948816|gb|AAG06126.1|AE004702_3 integration host factor, alpha subunit [Pseudomonas aeruginosa
          PAO1]
 gi|535711|gb|AAA65949.1| integration host factor alpha-subunit [Pseudomonas aeruginosa]
 gi|115585949|gb|ABJ11964.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|126167647|gb|EAZ53158.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
          C3719]
 gi|126194569|gb|EAZ58632.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
          2192]
 gi|150959786|gb|ABR81811.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
          PA7]
 gi|310880483|gb|EFQ39077.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
          39016]
          Length = 100

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +E GL+++++   V   F EI  +    E +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEIAERLYEELGLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK R+
Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARV 92


>gi|145638882|ref|ZP_01794490.1| integration host factor alpha-subunit [Haemophilus influenzae
          PittII]
 gi|145271854|gb|EDK11763.1| integration host factor alpha-subunit [Haemophilus influenzae
          PittII]
 gi|301170051|emb|CBW29655.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Haemophilus influenzae 10810]
 gi|309750859|gb|ADO80843.1| Integration host factor, alpha subunit [Haemophilus influenzae
          R2866]
          Length = 96

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+ D+++ +S ++ LS++D+   V     EI  S   G+ +K+S F  F ++ K SR 
Sbjct: 3  TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRSSLESGQDVKLSGFGNFELRDKSSRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  RRVV FK    L+ R+
Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARV 92


>gi|237731275|ref|ZP_04561756.1| integration host factor subunit alpha [Citrobacter sp. 30_2]
 gi|283833385|ref|ZP_06353126.1| integration host factor, alpha subunit [Citrobacter youngae ATCC
          29220]
 gi|226906814|gb|EEH92732.1| integration host factor subunit alpha [Citrobacter sp. 30_2]
 gi|291071034|gb|EFE09143.1| integration host factor, alpha subunit [Citrobacter youngae ATCC
          29220]
          Length = 99

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|218961994|ref|YP_001741769.1| DNA-binding protein HU (DNA-binding protein II) (TL29)
          [Candidatus Cloacamonas acidaminovorans]
 gi|167730651|emb|CAO81563.1| DNA-binding protein HU (DNA-binding protein II) (TL29)
          [Candidatus Cloacamonas acidaminovorans]
          Length = 95

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 53/91 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLVK IS+  G+ RKD    V  L   I DS  +G  I+I  F TF +K +  RVG
Sbjct: 1  MTKADLVKIISENTGIIRKDVAVVVDALLYAIKDSMAKGNHIEIRGFGTFKLKTRKPRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T+Q+V +  R V  FK S   K  +++
Sbjct: 61 RNPKTDQKVPVPARTVPTFKFSREFKNAVVN 91


>gi|189426728|ref|YP_001953904.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
 gi|189422987|gb|ACD97384.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
          Length = 93

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 57/90 (63%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++ L++ ++++  ++ KD+   V  L   I  +   GE++KI+ F  F VK+K +R 
Sbjct: 2  ALTKNKLIQLVAEQQHITLKDAALLVEELITLIKATLESGESLKIAKFGLFEVKEKHARR 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QT + + I+PR+V+ FK S +L++ I
Sbjct: 62 GRNPQTGEAITIEPRKVISFKPSVLLRQAI 91


>gi|326316778|ref|YP_004234450.1| histone family protein DNA-binding protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323373614|gb|ADX45883.1| histone family protein DNA-binding protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 136

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 56/91 (61%), Gaps = 1/91 (1%)

Query: 4   TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            +TRSDLV+ ++  FG L+++D+   V T+ + + D+ VRG  I++  F +F V ++  R
Sbjct: 27  PMTRSDLVEELAARFGQLTQRDAEAAVKTILDAVGDALVRGHRIEVRGFGSFSVNRRPPR 86

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           +GRN ++ + V I  +RV  FK    L++ +
Sbjct: 87  MGRNPRSGEAVHIPEKRVPHFKPGKALREAV 117


>gi|261868043|ref|YP_003255965.1| integration host factor subunit alpha [Aggregatibacter
          actinomycetemcomitans D11S-1]
 gi|293389947|ref|ZP_06634281.1| integration host factor, alpha subunit [Aggregatibacter
          actinomycetemcomitans D7S-1]
 gi|261413375|gb|ACX82746.1| integration host factor, alpha subunit [Aggregatibacter
          actinomycetemcomitans D11S-1]
 gi|290950481|gb|EFE00600.1| integration host factor, alpha subunit [Aggregatibacter
          actinomycetemcomitans D7S-1]
          Length = 98

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ +L +++ ++F LS++++   V + F EI  +   G  +K+S F  F ++ K SR 
Sbjct: 2  TLTKVELAENLIEKFHLSKREAKDLVESFFEEIRVALETGNDVKLSGFGNFELRDKASRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  RRVVVFK    L+ R+
Sbjct: 62 GRNPKTGESVPVSARRVVVFKPGQKLRNRV 91


>gi|161503552|ref|YP_001570664.1| integration host factor subunit alpha [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189044705|sp|A9MFB7|IHFA_SALAR RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|160864899|gb|ABX21522.1| hypothetical protein SARI_01630 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
          Length = 99

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|146311386|ref|YP_001176460.1| integration host factor subunit alpha [Enterobacter sp. 638]
 gi|261339521|ref|ZP_05967379.1| integration host factor, alpha subunit [Enterobacter cancerogenus
          ATCC 35316]
 gi|166918504|sp|A4W9M9|IHFA_ENT38 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|145318262|gb|ABP60409.1| integration host factor, alpha subunit [Enterobacter sp. 638]
 gi|288318334|gb|EFC57272.1| integration host factor, alpha subunit [Enterobacter cancerogenus
          ATCC 35316]
 gi|295096105|emb|CBK85195.1| integration host factor, alpha subunit [Enterobacter cloacae
          subsp. cloacae NCTC 9394]
          Length = 99

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|262044127|ref|ZP_06017202.1| integration host factor subunit alpha [Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884]
 gi|259038526|gb|EEW39722.1| integration host factor subunit alpha [Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884]
          Length = 99

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|262165483|ref|ZP_06033220.1| integration host factor alpha subunit [Vibrio mimicus VM223]
 gi|262025199|gb|EEY43867.1| integration host factor alpha subunit [Vibrio mimicus VM223]
          Length = 98

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L + + ++ G+S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAELAEDLFEKLGMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARV 91


>gi|296102760|ref|YP_003612906.1| integration host factor subunit alpha [Enterobacter cloacae
          subsp. cloacae ATCC 13047]
 gi|295057219|gb|ADF61957.1| integration host factor subunit alpha [Enterobacter cloacae
          subsp. cloacae ATCC 13047]
          Length = 99

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|47705|emb|CAA34713.1| integration host factor (AA 1-99) [Salmonella enterica subsp.
          enterica serovar Typhimurium]
          Length = 99

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFGLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|52080788|ref|YP_079579.1| non-specific DNA-binding protein HBsu signal recognition
          particle-like (SRP) component [Bacillus licheniformis
          ATCC 14580]
 gi|52786158|ref|YP_091987.1| Hbs [Bacillus licheniformis ATCC 14580]
 gi|319645255|ref|ZP_07999488.1| DNA-binding protein HU 1 [Bacillus sp. BT1B_CT2]
 gi|52003999|gb|AAU23941.1| non-specific DNA-binding protein HBsu signal recognition
          particle-like (SRP) component [Bacillus licheniformis
          ATCC 14580]
 gi|52348660|gb|AAU41294.1| Hbs [Bacillus licheniformis ATCC 14580]
 gi|317393064|gb|EFV73858.1| DNA-binding protein HU 1 [Bacillus sp. BT1B_CT2]
          Length = 92

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 55/86 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   LS+KD+T+ V ++F+ I D+   GE I++  F  F V+++ +R G
Sbjct: 1  MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGEKIQLIGFGNFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I   +V  FK    LK
Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALK 86


>gi|304437105|ref|ZP_07397068.1| DNA-binding protein HU [Selenomonas sp. oral taxon 149 str.
          67H29BP]
 gi|304370056|gb|EFM23718.1| DNA-binding protein HU [Selenomonas sp. oral taxon 149 str.
          67H29BP]
          Length = 100

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 53/87 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+ + +LV +++++  L++KD+ + V  LF  I  +   G+ I++  F TF VK + +R 
Sbjct: 10 TLNKQELVANVAEQASLTKKDAEKAVNALFETIKGALSEGDKIQLIGFGTFEVKDRAARK 69

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN QT +E++I   R  VFKA   LK
Sbjct: 70 GRNPQTGKEIEIAASRNPVFKAGKALK 96


>gi|300722785|ref|YP_003712076.1| integration host factor (IHF) subunit alpha [Xenorhabdus
          nematophila ATCC 19061]
 gi|297629293|emb|CBJ89892.1| integration host factor (IHF), alpha subunit, DNA-bending
          protein, DNA replication [Xenorhabdus nematophila ATCC
          19061]
          Length = 98

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ +++ ++ G+S++D+   V   F E+  S   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSENLFEKLGISKRDAKDLVEIFFEEVRRSLENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKNRV 91


>gi|229168463|ref|ZP_04296186.1| DNA-binding protein HU [Bacillus cereus AH621]
 gi|228614869|gb|EEK71971.1| DNA-binding protein HU [Bacillus cereus AH621]
          Length = 93

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 58/91 (63%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K + +++L+K++++   +S+K++T  + T+   I +S   GE +++  F TF V+++ +R
Sbjct: 2  KNMNKTELIKNVAQNAEISQKEATVVLQTVVESITNSLAAGEKVQLIGFGTFEVRERAAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN QT +E++I   +V  FKA   LK+ +
Sbjct: 62 TGRNPQTGEEMQIAASKVPAFKAGKELKEAV 92


>gi|116492840|ref|YP_804575.1| nucleoid protein Hbs [Pediococcus pentosaceus ATCC 25745]
 gi|116102990|gb|ABJ68133.1| bacterial nucleoid protein Hbs [Pediococcus pentosaceus ATCC
          25745]
          Length = 91

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 53/84 (63%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV +++K  GL++KD+T  V  +F+ I D   +GE +++  F TF V+ + +R GRN
Sbjct: 4  KAELVDNVAKVTGLTKKDATAAVDAVFSSIQDDLKKGEKVQLIGFGTFEVRNRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E++I   +V  FK    LK
Sbjct: 64 PQTGKEIEIAASKVPAFKPGKALK 87


>gi|288555641|ref|YP_003427576.1| non-specific DNA-binding protein II (Hbsu-like protein) [Bacillus
          pseudofirmus OF4]
 gi|288546801|gb|ADC50684.1| non-specific DNA-binding protein II (Hbsu-like protein) [Bacillus
          pseudofirmus OF4]
          Length = 90

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 56/89 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ S+S++  LS+KD+++ V  +F+ I ++ V G  +++  F +F V+++ +R G
Sbjct: 1  MNKTDLINSVSEQADLSKKDASKAVDAVFDSITNALVEGGKVQLVGFGSFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT QE++I   +   FK    LK  +
Sbjct: 61 RNPQTGQEIEIPATKNPAFKPGKQLKDAV 89


>gi|194334586|ref|YP_002016446.1| histone family protein DNA-binding protein [Prosthecochloris
          aestuarii DSM 271]
 gi|194312404|gb|ACF46799.1| histone family protein DNA-binding protein [Prosthecochloris
          aestuarii DSM 271]
          Length = 103

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 57/98 (58%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSKT T++DLV +IS   GL++ ++   V  LF  I DS   G+ I+I  F +F+++ K 
Sbjct: 1  MSKTTTKADLVNTISHTTGLTKHETEAVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           R+ RN +T ++V ++ + V  FK S   K  +   ++
Sbjct: 61 ERLARNPRTGEKVSVEAKNVPTFKISKEFKHAVSQSLQ 98


>gi|296131726|ref|YP_003638973.1| histone family protein DNA-binding protein [Thermincola sp. JR]
 gi|296030304|gb|ADG81072.1| histone family protein DNA-binding protein [Thermincola potens
          JR]
          Length = 90

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 56/89 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLV S++++ GL++KD+ + V+ +F  I ++  +G+ +++  F TF V+++ +R G
Sbjct: 1  MNKQDLVSSVAEKAGLTKKDADKAVSAVFASIEEALAKGDKVQLVGFGTFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I   +V  FKA   LK  +
Sbjct: 61 RNPQTGAVIEIAAAKVPAFKAGKALKDAV 89


>gi|118478949|ref|YP_896100.1| HU family DNA-binding protein [Bacillus thuringiensis str. Al
          Hakam]
 gi|228902230|ref|ZP_04066390.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222]
 gi|228909551|ref|ZP_04073374.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
 gi|228916359|ref|ZP_04079928.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis
          BGSC 4CC1]
 gi|228935026|ref|ZP_04097856.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228940802|ref|ZP_04103362.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228947391|ref|ZP_04109682.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228954004|ref|ZP_04116033.1| DNA-binding protein HU [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
 gi|228959936|ref|ZP_04121601.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228966650|ref|ZP_04127696.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str.
          T04001]
 gi|228973722|ref|ZP_04134300.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228980278|ref|ZP_04140589.1| DNA-binding protein HU [Bacillus thuringiensis Bt407]
 gi|228986865|ref|ZP_04146992.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|229031353|ref|ZP_04187356.1| DNA-binding protein HU [Bacillus cereus AH1271]
 gi|229047408|ref|ZP_04193002.1| DNA-binding protein HU [Bacillus cereus AH676]
 gi|229071224|ref|ZP_04204448.1| DNA-binding protein HU [Bacillus cereus F65185]
 gi|229080981|ref|ZP_04213494.1| DNA-binding protein HU [Bacillus cereus Rock4-2]
 gi|229092762|ref|ZP_04223900.1| DNA-binding protein HU [Bacillus cereus Rock3-42]
 gi|229111199|ref|ZP_04240753.1| DNA-binding protein HU [Bacillus cereus Rock1-15]
 gi|229123244|ref|ZP_04252448.1| DNA-binding protein HU [Bacillus cereus 95/8201]
 gi|229129004|ref|ZP_04257977.1| DNA-binding protein HU [Bacillus cereus BDRD-Cer4]
 gi|229140371|ref|ZP_04268926.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26]
 gi|229146298|ref|ZP_04274670.1| DNA-binding protein HU [Bacillus cereus BDRD-ST24]
 gi|229151928|ref|ZP_04280124.1| DNA-binding protein HU [Bacillus cereus m1550]
 gi|229180004|ref|ZP_04307348.1| DNA-binding protein HU [Bacillus cereus 172560W]
 gi|229185956|ref|ZP_04313127.1| DNA-binding protein HU [Bacillus cereus BGSC 6E1]
 gi|229191850|ref|ZP_04318821.1| DNA-binding protein HU [Bacillus cereus ATCC 10876]
 gi|229197835|ref|ZP_04324551.1| DNA-binding protein HU [Bacillus cereus m1293]
 gi|118418174|gb|ABK86593.1| HU family DNA-binding protein [Bacillus thuringiensis str. Al
          Hakam]
 gi|228585553|gb|EEK43655.1| DNA-binding protein HU [Bacillus cereus m1293]
 gi|228591612|gb|EEK49460.1| DNA-binding protein HU [Bacillus cereus ATCC 10876]
 gi|228597508|gb|EEK55157.1| DNA-binding protein HU [Bacillus cereus BGSC 6E1]
 gi|228603213|gb|EEK60690.1| DNA-binding protein HU [Bacillus cereus 172560W]
 gi|228631483|gb|EEK88116.1| DNA-binding protein HU [Bacillus cereus m1550]
 gi|228637172|gb|EEK93630.1| DNA-binding protein HU [Bacillus cereus BDRD-ST24]
 gi|228642932|gb|EEK99208.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26]
 gi|228654241|gb|EEL10106.1| DNA-binding protein HU [Bacillus cereus BDRD-Cer4]
 gi|228660020|gb|EEL15656.1| DNA-binding protein HU [Bacillus cereus 95/8201]
 gi|228672193|gb|EEL27483.1| DNA-binding protein HU [Bacillus cereus Rock1-15]
 gi|228690560|gb|EEL44341.1| DNA-binding protein HU [Bacillus cereus Rock3-42]
 gi|228702295|gb|EEL54768.1| DNA-binding protein HU [Bacillus cereus Rock4-2]
 gi|228711845|gb|EEL63796.1| DNA-binding protein HU [Bacillus cereus F65185]
 gi|228723937|gb|EEL75288.1| DNA-binding protein HU [Bacillus cereus AH676]
 gi|228729963|gb|EEL80940.1| DNA-binding protein HU [Bacillus cereus AH1271]
 gi|228772814|gb|EEM21253.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228779383|gb|EEM27639.1| DNA-binding protein HU [Bacillus thuringiensis Bt407]
 gi|228785968|gb|EEM33969.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228793026|gb|EEM40582.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str.
          T04001]
 gi|228799679|gb|EEM46631.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228805570|gb|EEM52160.1| DNA-binding protein HU [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
 gi|228812244|gb|EEM58574.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228818816|gb|EEM64881.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228824596|gb|EEM70398.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228843269|gb|EEM88348.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis
          BGSC 4CC1]
 gi|228849840|gb|EEM94671.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
 gi|228857345|gb|EEN01845.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222]
          Length = 93

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 58/91 (63%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K + +++L+K++++   +S+K++T  V T+   I ++   GE +++  F TF V+++ +R
Sbjct: 2  KNMNKTELIKNVAQNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN QT +E++I   +V  FKA   LK+ +
Sbjct: 62 TGRNPQTGEEMQIAASKVPAFKAGKELKEAV 92


>gi|110834697|ref|YP_693556.1| integration host factor subunit alpha [Alcanivorax borkumensis
          SK2]
 gi|123345421|sp|Q0VNG4|IHFA_ALCBS RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|110647808|emb|CAL17284.1| Bacterial nucleoid DNA-binding protein [Alcanivorax borkumensis
          SK2]
          Length = 100

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + + +E GL+++++   V   F EI  S      +K+S F  F ++ K  R 
Sbjct: 3  ALTKADMAERLFEELGLNKREAKEMVEMFFEEIRHSLEDNIPVKLSGFGNFDLRDKSERP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK+R+
Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKQRV 92


>gi|300691321|ref|YP_003752316.1| integration host factor (IHF), alpha subunit [Ralstonia
           solanacearum PSI07]
 gi|299078381|emb|CBJ51031.1| integration host factor (IHF), alpha subunit [Ralstonia
           solanacearum PSI07]
          Length = 135

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 56/90 (62%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L + + ++ GL++++S   V   FN I ++  +G+++K+S F  F ++ K  R 
Sbjct: 34  TLTKAELAEMLFEQVGLNKRESKDMVEAFFNVIREALEQGDSVKLSGFGNFQLRDKPQRP 93

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN +T + + I  RRVV F AS  LK  +
Sbjct: 94  GRNPKTGEIIPITARRVVTFHASQKLKALV 123


>gi|319762546|ref|YP_004126483.1| integration host factor, beta subunit [Alicycliphilus
          denitrificans BC]
 gi|330824563|ref|YP_004387866.1| integration host factor subunit beta [Alicycliphilus
          denitrificans K601]
 gi|317117107|gb|ADU99595.1| integration host factor, beta subunit [Alicycliphilus
          denitrificans BC]
 gi|329309935|gb|AEB84350.1| integration host factor, beta subunit [Alicycliphilus
          denitrificans K601]
          Length = 100

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDLV+ ++  FG L+++D+   V T+ + + D+ VRG  I+I  F +F V  +  R+
Sbjct: 1  MTRSDLVEELAARFGQLTQRDAEYAVKTILDAVSDALVRGHRIEIRGFGSFSVSHRPPRM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V I  +RV  FK    L++ +
Sbjct: 61 GRNPRSGEAVHIPEKRVPHFKPGKALREAV 90


>gi|330009679|ref|ZP_08306553.1| integration host factor, alpha subunit [Klebsiella sp. MS 92-3]
 gi|328534767|gb|EGF61323.1| integration host factor, alpha subunit [Klebsiella sp. MS 92-3]
          Length = 94

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|31789462|gb|AAP58576.1| putative DNA-binding protein [uncultured Acidobacteria bacterium]
          Length = 116

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 56/89 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV+ +++   L++KD+ R V  +F  I ++  +GE I++  F +F V+++G+R G
Sbjct: 1  MTKAELVEDVAEAAELTKKDAERLVEIVFESIIETLNQGEKIELRGFGSFRVRERGARRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   V I  +RV  FK    LK+ I
Sbjct: 61 RNPKTGDPVSIPAKRVPYFKPGKELKELI 89


>gi|400046|sp|P23302|IHFA_SERMA RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
          Length = 99

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|51246635|ref|YP_066519.1| integration host factor, alpha-subunit [Desulfotalea psychrophila
          LSv54]
 gi|50877672|emb|CAG37512.1| probable integration host factor, alpha-subunit [Desulfotalea
          psychrophila LSv54]
          Length = 94

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 4  TITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T+T++DL++ + K+  GL++  +T  V        D+ + G  + +S F  F+VK K SR
Sbjct: 2  TLTKADLIQQVYKKHEGLTKAQATESVEAFLRISKDALISGSDLLLSGFGKFNVKDKSSR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN QT  E+ ++ RRVV FK S IL+ +I
Sbjct: 62 RGRNPQTGDELTLEARRVVTFKPSGILRDKI 92


>gi|21231892|ref|NP_637809.1| integration host factor subunit alpha [Xanthomonas campestris pv.
          campestris str. ATCC 33913]
 gi|21243319|ref|NP_642901.1| integration host factor subunit alpha [Xanthomonas axonopodis pv.
          citri str. 306]
 gi|58582804|ref|YP_201820.1| integration host factor subunit alpha [Xanthomonas oryzae pv.
          oryzae KACC10331]
 gi|66767980|ref|YP_242742.1| integration host factor subunit alpha [Xanthomonas campestris pv.
          campestris str. 8004]
 gi|78048345|ref|YP_364520.1| integration host factor subunit alpha [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|84624678|ref|YP_452050.1| integration host factor subunit alpha [Xanthomonas oryzae pv.
          oryzae MAFF 311018]
 gi|166711594|ref|ZP_02242801.1| integration host factor subunit alpha [Xanthomonas oryzae pv.
          oryzicola BLS256]
 gi|188991106|ref|YP_001903116.1| integration host factor subunit alpha [Xanthomonas campestris pv.
          campestris str. B100]
 gi|289661755|ref|ZP_06483336.1| integration host factor subunit alpha [Xanthomonas campestris pv.
          vasculorum NCPPB702]
 gi|289668707|ref|ZP_06489782.1| integration host factor subunit alpha [Xanthomonas campestris pv.
          musacearum NCPPB4381]
 gi|325919872|ref|ZP_08181862.1| integration host factor, alpha subunit [Xanthomonas gardneri ATCC
          19865]
 gi|325927163|ref|ZP_08188426.1| integration host factor, alpha subunit [Xanthomonas perforans
          91-118]
 gi|59799768|sp|P0A0T9|IHFA_XANCP RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|59799769|sp|P0A0U0|IHFA_XANAC RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|75508131|sp|Q5GXY6|IHFA_XANOR RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|81306043|sp|Q4UW51|IHFA_XANC8 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123730273|sp|Q3BRU3|IHFA_XANC5 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123739069|sp|Q2P101|IHFA_XANOM RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709759|sp|B0RRH5|IHFA_XANCB RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|1172091|gb|AAA86369.1| GumA [Xanthomonas campestris]
 gi|21108861|gb|AAM37437.1| integration host factor alpha subunit [Xanthomonas axonopodis pv.
          citri str. 306]
 gi|21113616|gb|AAM41733.1| integration host factor alpha chain [Xanthomonas campestris pv.
          campestris str. ATCC 33913]
 gi|58427398|gb|AAW76435.1| integration host factor alpha subunit [Xanthomonas oryzae pv.
          oryzae KACC10331]
 gi|66573312|gb|AAY48722.1| integration host factor alpha chain [Xanthomonas campestris pv.
          campestris str. 8004]
 gi|78036775|emb|CAJ24468.1| Integration host factor alpha subunit [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|84368618|dbj|BAE69776.1| Integration host factor alpha-subunit [Xanthomonas oryzae pv.
          oryzae MAFF 311018]
 gi|167732866|emb|CAP51060.1| integration host factor alpha chain [Xanthomonas campestris pv.
          campestris]
 gi|325542476|gb|EGD13955.1| integration host factor, alpha subunit [Xanthomonas perforans
          91-118]
 gi|325549656|gb|EGD20520.1| integration host factor, alpha subunit [Xanthomonas gardneri ATCC
          19865]
          Length = 99

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  E GL+++++  FV   F+ + D+  +G  +K+S F  F +++K  R 
Sbjct: 2  ALTKAEMAERLFDEVGLNKREAKEFVDAFFDVLRDALEQGRQVKLSGFGNFDLRRKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  R VV F+    LK+R+
Sbjct: 62 GRNPKTGEEIPISARTVVTFRPGQKLKERV 91


>gi|158521048|ref|YP_001528918.1| histone family protein DNA-binding protein [Desulfococcus
          oleovorans Hxd3]
 gi|158509874|gb|ABW66841.1| histone family protein DNA-binding protein [Desulfococcus
          oleovorans Hxd3]
          Length = 94

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+S ++ S+ +E GL RK     V  L   I ++   GE + +S F  F VK+K +R 
Sbjct: 2  TLTKSRIIDSVQEETGLPRKRCDELVEELLEIIKETLANGENLMVSGFGKFCVKEKKARK 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN  T  ++ +D R+VV FK S  L+++I
Sbjct: 62 GRNPATGDDLMLDERKVVTFKCSQGLREKI 91


>gi|255021995|ref|ZP_05294002.1| integration host factor, alpha subunit [Acidithiobacillus caldus
          ATCC 51756]
 gi|254968563|gb|EET26118.1| integration host factor, alpha subunit [Acidithiobacillus caldus
          ATCC 51756]
          Length = 101

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 50/87 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ DL   +    G  + ++   V   F+ I ++  RGE +K+S F  F ++ K +R 
Sbjct: 2  TVTKLDLTNHLYDTIGFKKAEAAELVDLFFDTIRETLARGEEVKLSGFGNFTLRDKRARP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T + V+I  RRVV F AS +LK
Sbjct: 62 GRNPRTRELVEISARRVVTFHASPVLK 88


>gi|152831|gb|AAA26558.1| integration host factor alpha-subunit [Serratia marcescens]
          Length = 98

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|78045062|ref|YP_359077.1| DNA-binding protein HU [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997177|gb|ABB16076.1| DNA-binding protein HU [Carboxydothermus hydrogenoformans Z-2901]
          Length = 89

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 58/89 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  I+++  +++KD+ + +  +   I ++  +GE +++  F TF V+++ +R G
Sbjct: 1  MNKAELVSVIAEKAEMTKKDAEKALNAVLAAIEEALKKGEKVQLVGFGTFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT QE++I   +V VFK   +LK++I
Sbjct: 61 RNPQTGQEIEIPASKVPVFKPGKLLKEKI 89


>gi|251792548|ref|YP_003007274.1| integration host factor subunit alpha [Aggregatibacter
          aphrophilus NJ8700]
 gi|247533941|gb|ACS97187.1| integration host factor, alpha subunit [Aggregatibacter
          aphrophilus NJ8700]
          Length = 98

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ +L +++ ++F LS++++   V + F EI  +   G  +K+S F  F ++ K SR 
Sbjct: 2  TLTKVELAENLIEKFHLSKREAKDLVESFFEEIRVALETGNDVKLSGFGNFELRDKASRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  RRVVVFK    L+ R+
Sbjct: 62 GRNPKTGESVPVSARRVVVFKPGQKLRSRV 91


>gi|153875700|ref|ZP_02003384.1| Histone-like bacterial DNA-binding protein [Beggiatoa sp. PS]
 gi|152067837|gb|EDN66617.1| Histone-like bacterial DNA-binding protein [Beggiatoa sp. PS]
          Length = 98

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 55/93 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++ + + +  E GL+++++   V   F E+  +  +GE++K+S F  F ++ K  R 
Sbjct: 2  ALTKAAMAEKLFDEVGLNKREAKDMVDRFFEEVRAALEKGESVKLSGFGNFDLRDKKQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T QE+ I  RRVV F+    L+ R+ ++
Sbjct: 62 GRNPKTGQEIPISARRVVTFRPGQKLRARVEEN 94


>gi|157370390|ref|YP_001478379.1| integration host factor subunit alpha [Serratia proteamaculans
          568]
 gi|270261563|ref|ZP_06189836.1| integration host factor, alpha subunit [Serratia odorifera 4Rx13]
 gi|293396364|ref|ZP_06640642.1| integration host factor subunit alpha [Serratia odorifera DSM
          4582]
 gi|166918522|sp|A8GDR1|IHFA_SERP5 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|157322154|gb|ABV41251.1| integration host factor, alpha subunit [Serratia proteamaculans
          568]
 gi|270045047|gb|EFA18138.1| integration host factor, alpha subunit [Serratia odorifera 4Rx13]
 gi|291421153|gb|EFE94404.1| integration host factor subunit alpha [Serratia odorifera DSM
          4582]
          Length = 98

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|104781112|ref|YP_607610.1| integration host factor subunit alpha [Pseudomonas entomophila
          L48]
 gi|123079215|sp|Q1IC09|IHFA_PSEE4 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|95110099|emb|CAK14804.1| integration host factor (IHF), alpha subunit, DNA-binding
          protein, DNA replication [Pseudomonas entomophila L48]
          Length = 100

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +E GL+++++   V   F EI  +    E +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEMAERLYEELGLNKREAKELVELFFEEIRHALEDNEQVKLSGFGNFDLRDKRQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK R+
Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARV 92


>gi|153833703|ref|ZP_01986370.1| integration host factor, alpha subunit [Vibrio harveyi HY01]
 gi|156974397|ref|YP_001445304.1| integration host factor subunit alpha [Vibrio harveyi ATCC
          BAA-1116]
 gi|269962174|ref|ZP_06176527.1| integration host factor, alpha subunit [Vibrio harveyi 1DA3]
 gi|166918532|sp|A7MVH4|IHFA_VIBHB RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|148869982|gb|EDL68942.1| integration host factor, alpha subunit [Vibrio harveyi HY01]
 gi|156525991|gb|ABU71077.1| hypothetical protein VIBHAR_02112 [Vibrio harveyi ATCC BAA-1116]
 gi|269833005|gb|EEZ87111.1| integration host factor, alpha subunit [Vibrio harveyi 1DA3]
          Length = 98

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L +++  + G S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAELAENLFDKLGFSKRDAKETVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARV 91


>gi|238753681|ref|ZP_04615043.1| Integration host factor subunit alpha [Yersinia ruckeri ATCC
          29473]
 gi|238708233|gb|EEQ00589.1| Integration host factor subunit alpha [Yersinia ruckeri ATCC
          29473]
          Length = 98

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|238783379|ref|ZP_04627402.1| Integration host factor subunit alpha [Yersinia bercovieri ATCC
          43970]
 gi|238791696|ref|ZP_04635333.1| Integration host factor subunit alpha [Yersinia intermedia ATCC
          29909]
 gi|238797375|ref|ZP_04640875.1| Integration host factor subunit alpha [Yersinia mollaretii ATCC
          43969]
 gi|238715624|gb|EEQ07613.1| Integration host factor subunit alpha [Yersinia bercovieri ATCC
          43970]
 gi|238718806|gb|EEQ10622.1| Integration host factor subunit alpha [Yersinia mollaretii ATCC
          43969]
 gi|238728800|gb|EEQ20317.1| Integration host factor subunit alpha [Yersinia intermedia ATCC
          29909]
          Length = 98

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|148543996|ref|YP_001271366.1| nucleoid protein Hbs [Lactobacillus reuteri DSM 20016]
 gi|184153390|ref|YP_001841731.1| DNA-binding protein HU [Lactobacillus reuteri JCM 1112]
 gi|194467924|ref|ZP_03073910.1| histone family protein DNA-binding protein [Lactobacillus reuteri
          100-23]
 gi|227364909|ref|ZP_03848954.1| DNA-binding protein HU [Lactobacillus reuteri MM2-3]
 gi|227543423|ref|ZP_03973472.1| DNA-binding protein HU [Lactobacillus reuteri CF48-3A]
 gi|300910089|ref|ZP_07127549.1| DNA-binding protein HU [Lactobacillus reuteri SD2112]
 gi|325682466|ref|ZP_08161983.1| DNA-binding protein HU [Lactobacillus reuteri MM4-1A]
 gi|133930435|gb|ABO43789.1| DNA-binding protein [Lactobacillus reuteri]
 gi|148531030|gb|ABQ83029.1| bacterial nucleoid protein Hbs [Lactobacillus reuteri DSM 20016]
 gi|183224734|dbj|BAG25251.1| DNA-binding protein HU [Lactobacillus reuteri JCM 1112]
 gi|194452777|gb|EDX41675.1| histone family protein DNA-binding protein [Lactobacillus reuteri
          100-23]
 gi|227070056|gb|EEI08434.1| DNA-binding protein HU [Lactobacillus reuteri MM2-3]
 gi|227186602|gb|EEI66673.1| DNA-binding protein HU [Lactobacillus reuteri CF48-3A]
 gi|300892737|gb|EFK86097.1| DNA-binding protein HU [Lactobacillus reuteri SD2112]
 gi|324978305|gb|EGC15255.1| DNA-binding protein HU [Lactobacillus reuteri MM4-1A]
          Length = 91

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV +++   GL++KD+T  V  +F+ I  S  +GE +++  F  F V+Q+ +R GRN
Sbjct: 4  KAELVSNVATATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E+ I   +V  FK    LK
Sbjct: 64 PQTGEEINIPASKVPAFKPGKALK 87


>gi|218667321|ref|YP_002425542.1| DNA-binding protein, HU family [Acidithiobacillus ferrooxidans
          ATCC 23270]
 gi|218519534|gb|ACK80120.1| DNA-binding protein, HU family [Acidithiobacillus ferrooxidans
          ATCC 23270]
          Length = 91

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 53/89 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+ DL + +S   GL+ K+    V  +F+ I  +   GE +K+S F  F + +K +R 
Sbjct: 2  TITKLDLTRHLSDTMGLTAKECAALVNAMFDTIRATLASGEDVKLSGFGNFILHEKRARP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +  +  +I  RRVV F+AS ++++R
Sbjct: 62 GRNPKNGEPFEIKARRVVTFRASQLVRER 90


>gi|56420750|ref|YP_148068.1| DNA-binding protein HU [Geobacillus kaustophilus HTA426]
 gi|138895793|ref|YP_001126246.1| DNA binding protein HU [Geobacillus thermodenitrificans NG80-2]
 gi|196248675|ref|ZP_03147375.1| histone family protein DNA-binding protein [Geobacillus sp.
          G11MC16]
 gi|261417947|ref|YP_003251629.1| histone family protein DNA-binding protein [Geobacillus sp.
          Y412MC61]
 gi|297529615|ref|YP_003670890.1| histone family protein DNA-binding protein [Geobacillus sp.
          C56-T3]
 gi|319767241|ref|YP_004132742.1| histone family protein DNA-binding protein [Geobacillus sp.
          Y412MC52]
 gi|61222554|sp|P0A3H0|DBH_BACST RecName: Full=DNA-binding protein HU; AltName: Full=DNA-binding
          protein II; AltName: Full=HB
 gi|61222555|sp|P0A3H1|DBH_BACCL RecName: Full=DNA-binding protein HU; AltName: Full=DNA-binding
          protein II; AltName: Full=HB
 gi|61222556|sp|P0A3H2|DBH_BACCA RecName: Full=DNA-binding protein HU; AltName: Full=DNA-binding
          protein II; AltName: Full=HB
 gi|1311345|pdb|1HUE|A Chain A, Histone-Like Protein
 gi|1311346|pdb|1HUE|B Chain B, Histone-Like Protein
 gi|4389195|pdb|1HUU|A Chain A, Dna-Binding Protein Hu From Bacillus Stearothermophilus
 gi|4389196|pdb|1HUU|B Chain B, Dna-Binding Protein Hu From Bacillus Stearothermophilus
 gi|4389197|pdb|1HUU|C Chain C, Dna-Binding Protein Hu From Bacillus Stearothermophilus
 gi|143065|gb|AAA22532.1| hubst [Geobacillus stearothermophilus]
 gi|143067|gb|AAA22533.1| hubcalx [Bacillus caldotenax]
 gi|143069|gb|AAA22534.1| hubcald [Bacillus caldolyticus]
 gi|1065992|dbj|BAA07273.1| DNA binding protein HU [Geobacillus stearothermophilus]
 gi|56380592|dbj|BAD76500.1| DNA-binding protein HU (DNA-binding protein II) [Geobacillus
          kaustophilus HTA426]
 gi|134267306|gb|ABO67501.1| DNA binding protein HU [Geobacillus thermodenitrificans NG80-2]
 gi|196211551|gb|EDY06310.1| histone family protein DNA-binding protein [Geobacillus sp.
          G11MC16]
 gi|261374404|gb|ACX77147.1| histone family protein DNA-binding protein [Geobacillus sp.
          Y412MC61]
 gi|297252867|gb|ADI26313.1| histone family protein DNA-binding protein [Geobacillus sp.
          C56-T3]
 gi|317112107|gb|ADU94599.1| histone family protein DNA-binding protein [Geobacillus sp.
          Y412MC52]
          Length = 90

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 56/86 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++  GLS+KD+T+ V  +F+ I ++  +G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTELINAVAETSGLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I   +V  FK    LK
Sbjct: 61 RNPQTGEEMEIPASKVPAFKPGKALK 86


>gi|28898068|ref|NP_797673.1| integration host factor subunit alpha [Vibrio parahaemolyticus
          RIMD 2210633]
 gi|153839847|ref|ZP_01992514.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          AQ3810]
 gi|260366369|ref|ZP_05778808.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          K5030]
 gi|260878417|ref|ZP_05890772.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          AN-5034]
 gi|260896996|ref|ZP_05905492.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          Peru-466]
 gi|260901794|ref|ZP_05910189.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          AQ4037]
 gi|33301264|sp|Q87Q56|IHFA_VIBPA RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|28806282|dbj|BAC59557.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          RIMD 2210633]
 gi|149746630|gb|EDM57618.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          AQ3810]
 gi|308087674|gb|EFO37369.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          Peru-466]
 gi|308091287|gb|EFO40982.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          AN-5034]
 gi|308108021|gb|EFO45561.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          AQ4037]
 gi|308113197|gb|EFO50737.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          K5030]
 gi|328472975|gb|EGF43823.1| integration host factor subunit alpha [Vibrio parahaemolyticus
          10329]
          Length = 98

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L +++  + G S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAELAENLFDKLGFSKRDAKETVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARV 91


>gi|329666305|pdb|3RHI|A Chain A, Dna-Binding Protein Hu From Bacillus Anthracis
 gi|329666306|pdb|3RHI|B Chain B, Dna-Binding Protein Hu From Bacillus Anthracis
 gi|329666307|pdb|3RHI|C Chain C, Dna-Binding Protein Hu From Bacillus Anthracis
 gi|329666308|pdb|3RHI|D Chain D, Dna-Binding Protein Hu From Bacillus Anthracis
          Length = 93

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 58/92 (63%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          S  + +++L+K++++   +S+K++T  V T+   I ++   GE +++  F TF V+++ +
Sbjct: 1  SNAMNKTELIKNVAQNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAA 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R GRN QT +E++I   +V  FKA   LK+ +
Sbjct: 61 RTGRNPQTGEEMQIAASKVPAFKAGKELKEAV 92


>gi|146307010|ref|YP_001187475.1| integration host factor subunit alpha [Pseudomonas mendocina ymp]
 gi|166918516|sp|A4XTS7|IHFA_PSEMY RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|145575211|gb|ABP84743.1| integration host factor, alpha subunit [Pseudomonas mendocina
          ymp]
          Length = 100

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +E GL+++++   V   F EI  +    E +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEMAERLYEELGLNKREAKELVELFFEEIRQALELNEQVKLSGFGNFDLRDKRQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK R+
Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARV 92


>gi|332141057|ref|YP_004426795.1| integration host factor subunit alpha [Alteromonas macleodii str.
          'Deep ecotype']
 gi|226707368|sp|B4RS41|IHFA_ALTMD RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|327551079|gb|AEA97797.1| integration host factor subunit alpha [Alteromonas macleodii str.
          'Deep ecotype']
          Length = 99

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ G++++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAEHLFEKLGINKRDAKDLVELFFEEIKGALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPIKARRVVTFRPGQKLKSRV 91


>gi|37526554|ref|NP_929898.1| integration host factor subunit alpha [Photorhabdus luminescens
          subsp. laumondii TTO1]
 gi|253989352|ref|YP_003040708.1| integration host factor subunit alpha [Photorhabdus asymbiotica
          subsp. asymbiotica ATCC 43949]
 gi|81707667|sp|Q7N3Q2|IHFA_PHOLL RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|36785985|emb|CAE15037.1| integration host factor alpha chain (IHF-alpha) [Photorhabdus
          luminescens subsp. laumondii TTO1]
 gi|253780802|emb|CAQ83964.1| integration host factor subunit alpha (ihf-alpha) [Photorhabdus
          asymbiotica]
          Length = 98

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ +++ ++ G+S++D+   V   F E+  S   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSENLFEKLGISKRDAKDLVELFFEEVRRSLENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|85059402|ref|YP_455104.1| integration host factor subunit alpha [Sodalis glossinidius str.
          'morsitans']
 gi|123725404|sp|Q2NT26|IHFA_SODGM RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|84779922|dbj|BAE74699.1| integration host factor alpha subunit [Sodalis glossinidius str.
          'morsitans']
          Length = 98

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKEIVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|81428626|ref|YP_395626.1| histone-like DNA-binding protein HU [Lactobacillus sakei subsp.
          sakei 23K]
 gi|78610268|emb|CAI55317.1| Histone-like DNA-binding protein HU [Lactobacillus sakei subsp.
          sakei 23K]
          Length = 91

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 53/84 (63%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          ++ L+++++ + GL++KD+T  V  +F  I D+  +G+ +++  F TF V+++ +R GRN
Sbjct: 4  KAQLIENVASKTGLTKKDATAAVDAVFGSIQDTLKQGDKVQLIGFGTFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT  E+KI   +V  FK    LK
Sbjct: 64 PQTGAEIKIPASKVPAFKPGKALK 87


>gi|22125804|ref|NP_669227.1| integration host factor subunit alpha [Yersinia pestis KIM 10]
 gi|45442004|ref|NP_993543.1| integration host factor subunit alpha [Yersinia pestis biovar
          Microtus str. 91001]
 gi|51596659|ref|YP_070850.1| integration host factor subunit alpha [Yersinia
          pseudotuberculosis IP 32953]
 gi|108807766|ref|YP_651682.1| integration host factor subunit alpha [Yersinia pestis Antiqua]
 gi|108812043|ref|YP_647810.1| integration host factor subunit alpha [Yersinia pestis Nepal516]
 gi|123442195|ref|YP_001006176.1| integration host factor subunit alpha [Yersinia enterocolitica
          subsp. enterocolitica 8081]
 gi|145598026|ref|YP_001162102.1| integration host factor subunit alpha [Yersinia pestis Pestoides
          F]
 gi|149365665|ref|ZP_01887700.1| integration host factor alpha-subunit [Yersinia pestis CA88-4125]
 gi|153948307|ref|YP_001400695.1| integration host factor subunit alpha [Yersinia
          pseudotuberculosis IP 31758]
 gi|162420689|ref|YP_001607026.1| integration host factor subunit alpha [Yersinia pestis Angola]
 gi|165927499|ref|ZP_02223331.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165939484|ref|ZP_02228030.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|166011822|ref|ZP_02232720.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166211124|ref|ZP_02237159.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|167400951|ref|ZP_02306457.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167422126|ref|ZP_02313879.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167424960|ref|ZP_02316713.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|170024065|ref|YP_001720570.1| integration host factor subunit alpha [Yersinia
          pseudotuberculosis YPIII]
 gi|186895716|ref|YP_001872828.1| integration host factor subunit alpha [Yersinia
          pseudotuberculosis PB1/+]
 gi|218929515|ref|YP_002347390.1| integration host factor subunit alpha [Yersinia pestis CO92]
 gi|229837952|ref|ZP_04458111.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229895112|ref|ZP_04510288.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Yersinia pestis Pestoides A]
 gi|229898513|ref|ZP_04513658.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Yersinia pestis biovar Orientalis str. India 195]
 gi|229902354|ref|ZP_04517474.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Yersinia pestis Nepal516]
 gi|238749476|ref|ZP_04610981.1| Integration host factor subunit alpha [Yersinia rohdei ATCC
          43380]
 gi|238765301|ref|ZP_04626228.1| Integration host factor subunit alpha [Yersinia kristensenii ATCC
          33638]
 gi|238787094|ref|ZP_04630894.1| Integration host factor subunit alpha [Yersinia frederiksenii
          ATCC 33641]
 gi|270490464|ref|ZP_06207538.1| integration host factor, alpha subunit [Yersinia pestis KIM D27]
 gi|332161617|ref|YP_004298194.1| integration host factor subunit alpha [Yersinia enterocolitica
          subsp. palearctica 105.5R(r)]
 gi|21362607|sp|Q8ZDX2|IHFA_YERPE RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|55977891|sp|Q9X9F6|IHFA_YERPS RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|122979583|sp|Q1C735|IHFA_YERPA RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123373196|sp|Q1CIH0|IHFA_YERPN RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|166918533|sp|A1JMM4|IHFA_YERE8 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|166918534|sp|A7FHG7|IHFA_YERP3 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|166918535|sp|A4TIL7|IHFA_YERPP RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709763|sp|B2K662|IHFA_YERPB RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709764|sp|A9R0A2|IHFA_YERPG RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709765|sp|B1JJ23|IHFA_YERPY RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|21958730|gb|AAM85478.1|AE013793_14 integration host factor (IHF), alpha subunit [Yersinia pestis KIM
          10]
 gi|45436867|gb|AAS62420.1| integration host factor alpha-subunit [Yersinia pestis biovar
          Microtus str. 91001]
 gi|51589941|emb|CAH21573.1| integration host factor alpha-subunit [Yersinia
          pseudotuberculosis IP 32953]
 gi|108775691|gb|ABG18210.1| integration host factor alpha-subunit [Yersinia pestis Nepal516]
 gi|108779679|gb|ABG13737.1| integration host factor alpha-subunit [Yersinia pestis Antiqua]
 gi|115348126|emb|CAL21054.1| integration host factor alpha-subunit [Yersinia pestis CO92]
 gi|122089156|emb|CAL11998.1| integration host factor alpha-subunit [Yersinia enterocolitica
          subsp. enterocolitica 8081]
 gi|145209722|gb|ABP39129.1| integration host factor alpha-subunit [Yersinia pestis Pestoides
          F]
 gi|149292078|gb|EDM42152.1| integration host factor alpha-subunit [Yersinia pestis CA88-4125]
 gi|152959802|gb|ABS47263.1| integration host factor, alpha subunit [Yersinia
          pseudotuberculosis IP 31758]
 gi|162353504|gb|ABX87452.1| integration host factor, alpha subunit [Yersinia pestis Angola]
 gi|165912533|gb|EDR31164.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|165920554|gb|EDR37831.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165989287|gb|EDR41588.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166208304|gb|EDR52784.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|166958938|gb|EDR55959.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167049804|gb|EDR61212.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167056147|gb|EDR65925.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|169750599|gb|ACA68117.1| integration host factor, alpha subunit [Yersinia
          pseudotuberculosis YPIII]
 gi|186698742|gb|ACC89371.1| integration host factor, alpha subunit [Yersinia
          pseudotuberculosis PB1/+]
 gi|229680689|gb|EEO76785.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Yersinia pestis Nepal516]
 gi|229688061|gb|EEO80132.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Yersinia pestis biovar Orientalis str. India 195]
 gi|229694318|gb|EEO84365.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701874|gb|EEO89897.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Yersinia pestis Pestoides A]
 gi|238696474|gb|EEP89264.1| Integration host factor subunit alpha [Yersinia kristensenii ATCC
          33638]
 gi|238712131|gb|EEQ04344.1| Integration host factor subunit alpha [Yersinia rohdei ATCC
          43380]
 gi|238724882|gb|EEQ16522.1| Integration host factor subunit alpha [Yersinia frederiksenii
          ATCC 33641]
 gi|270338968|gb|EFA49745.1| integration host factor, alpha subunit [Yersinia pestis KIM D27]
 gi|318605892|emb|CBY27390.1| integration host factor alpha subunit [Yersinia enterocolitica
          subsp. palearctica Y11]
 gi|320015082|gb|ADV98653.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Yersinia pestis biovar Medievalis str. Harbin 35]
 gi|325665847|gb|ADZ42491.1| integration host factor subunit alpha [Yersinia enterocolitica
          subsp. palearctica 105.5R(r)]
          Length = 98

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|317491936|ref|ZP_07950370.1| integration host protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|322833533|ref|YP_004213560.1| integration host factor, subunit alpha [Rahnella sp. Y9602]
 gi|316920057|gb|EFV41382.1| integration host protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|321168734|gb|ADW74433.1| integration host factor, alpha subunit [Rahnella sp. Y9602]
          Length = 98

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEHLFEKLGLSKRDAKDLVEIFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|126735022|ref|ZP_01750768.1| integration host factor, beta subunit [Roseobacter sp. CCS2]
 gi|126715577|gb|EBA12442.1| integration host factor, beta subunit [Roseobacter sp. CCS2]
          Length = 93

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ ++ E   L ++D  R V T+F EI ++  RG+ +++  F  F VK++  R+
Sbjct: 1  MIRSELIQKLADENPHLYQRDVERIVNTIFEEIIEAMARGDRVELRGFGAFSVKKRDQRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V++D + V  FK   +L+ R+
Sbjct: 61 GRNPRTGEAVEVDEKHVPFFKTGKLLRDRL 90


>gi|28869581|ref|NP_792200.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          tomato str. DC3000]
 gi|66045408|ref|YP_235249.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          syringae B728a]
 gi|70729487|ref|YP_259225.1| integration host factor subunit alpha [Pseudomonas fluorescens
          Pf-5]
 gi|71737728|ref|YP_274360.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|77458164|ref|YP_347669.1| integration host factor subunit alpha [Pseudomonas fluorescens
          Pf0-1]
 gi|213970489|ref|ZP_03398616.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          tomato T1]
 gi|229591573|ref|YP_002873692.1| integration host factor subunit alpha [Pseudomonas fluorescens
          SBW25]
 gi|237801009|ref|ZP_04589470.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          oryzae str. 1_6]
 gi|257486166|ref|ZP_05640207.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          tabaci ATCC 11528]
 gi|289623630|ref|ZP_06456584.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          aesculi str. NCPPB3681]
 gi|289647152|ref|ZP_06478495.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          aesculi str. 2250]
 gi|289673310|ref|ZP_06494200.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          syringae FF5]
 gi|298486707|ref|ZP_07004764.1| Integration host factor alpha subunit [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|301385321|ref|ZP_07233739.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          tomato Max13]
 gi|302062680|ref|ZP_07254221.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          tomato K40]
 gi|302132637|ref|ZP_07258627.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          tomato NCPPB 1108]
 gi|302187619|ref|ZP_07264292.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          syringae 642]
 gi|312961937|ref|ZP_07776434.1| integration host factor, alpha subunit [Pseudomonas fluorescens
          WH6]
 gi|38372323|sp|Q883H6|IHFA_PSESM RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|81308305|sp|Q4ZUG1|IHFA_PSEU2 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123605197|sp|Q3KEX6|IHFA_PSEPF RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123747651|sp|Q48JR7|IHFA_PSE14 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123748498|sp|Q4KEV8|IHFA_PSEF5 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|259491533|sp|C3JZN1|IHFA_PSEFS RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|28852823|gb|AAO55895.1| integration host factor, alpha subunit [Pseudomonas syringae pv.
          tomato str. DC3000]
 gi|63256115|gb|AAY37211.1| Integration host factor, alpha subunit [Pseudomonas syringae pv.
          syringae B728a]
 gi|68343786|gb|AAY91392.1| integration host factor, alpha subunit [Pseudomonas fluorescens
          Pf-5]
 gi|71558281|gb|AAZ37492.1| integration host factor, alpha subunit [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|77382167|gb|ABA73680.1| integration host factor alpha-subunit [Pseudomonas fluorescens
          Pf0-1]
 gi|213924660|gb|EEB58228.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          tomato T1]
 gi|229363439|emb|CAY50633.1| integration host factor alpha-subunit [Pseudomonas fluorescens
          SBW25]
 gi|298158790|gb|EFH99853.1| Integration host factor alpha subunit [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|311283747|gb|EFQ62331.1| integration host factor, alpha subunit [Pseudomonas fluorescens
          WH6]
 gi|320324308|gb|EFW80387.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          glycinea str. B076]
 gi|320328570|gb|EFW84572.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330867701|gb|EGH02410.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          aesculi str. 0893_23]
 gi|330876795|gb|EGH10944.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
 gi|330885570|gb|EGH19719.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330888323|gb|EGH20984.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          mori str. 301020]
 gi|330898072|gb|EGH29491.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          japonica str. M301072PT]
 gi|330943383|gb|EGH45746.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          pisi str. 1704B]
 gi|330951872|gb|EGH52132.1| integration host factor subunit alpha [Pseudomonas syringae Cit
          7]
 gi|330958893|gb|EGH59153.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          maculicola str. ES4326]
 gi|330967292|gb|EGH67552.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          actinidiae str. M302091]
 gi|330973946|gb|EGH74012.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          aceris str. M302273PT]
 gi|330977715|gb|EGH77618.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          aptata str. DSM 50252]
 gi|330989235|gb|EGH87338.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          lachrymans str. M301315]
 gi|331010496|gb|EGH90552.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          tabaci ATCC 11528]
 gi|331016133|gb|EGH96189.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
 gi|331023866|gb|EGI03923.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          oryzae str. 1_6]
          Length = 100

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +E GL+++++   V   F EI  +    E +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEMAERLYEELGLNKREAKELVELFFEEIRHALEDNEQVKLSGFGNFDLRDKRQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK R+
Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARV 92


>gi|332993560|gb|AEF03615.1| integration host factor subunit alpha [Alteromonas sp. SN2]
          Length = 99

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ G++++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAEHLFEKLGINKRDAKDLVELFFEEIKGALEAGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPIKARRVVTFRPGQKLKSRV 91


>gi|325917703|ref|ZP_08179894.1| integration host factor, alpha subunit [Xanthomonas vesicatoria
          ATCC 35937]
 gi|325536097|gb|EGD07902.1| integration host factor, alpha subunit [Xanthomonas vesicatoria
          ATCC 35937]
          Length = 99

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  E GL+++++  FV   F+ + D+  +G  +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAERLFDEVGLNKREAKEFVDAFFDVLRDALEQGRQVKLSGFGNFDLRPKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  R VV F+    LK+R+
Sbjct: 62 GRNPKTGEEIPISARTVVTFRPGQKLKERV 91


>gi|238757777|ref|ZP_04618960.1| Integration host factor subunit alpha [Yersinia aldovae ATCC
          35236]
 gi|238704020|gb|EEP96554.1| Integration host factor subunit alpha [Yersinia aldovae ATCC
          35236]
          Length = 98

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|114332285|ref|YP_748507.1| integration host factor subunit alpha [Nitrosomonas eutropha C91]
 gi|122313054|sp|Q0ADP0|IHFA_NITEC RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|114309299|gb|ABI60542.1| integration host factor, alpha subunit [Nitrosomonas eutropha
          C91]
          Length = 102

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 54/96 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L   + +  GL+++++   V   + E+  +   G+ +K+S F  F ++ K  R 
Sbjct: 2  ALTKAELTDLLFENIGLNKREAKEIVECFYEEMRTALQNGDGVKLSGFGNFQLRTKPQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T +E+ I  RRVV F AS  LK  +  + RG
Sbjct: 62 GRNPKTGEEIPISARRVVTFHASQKLKSMVEANYRG 97


>gi|21673134|ref|NP_661199.1| DNA-binding protein HU-alpha, putative [Chlorobium tepidum TLS]
 gi|21646210|gb|AAM71541.1| DNA-binding protein HU-alpha, putative [Chlorobium tepidum TLS]
          Length = 101

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 58/101 (57%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           M +T T++DLV  I++  GL++ ++   V  LF  I DS   G+ I+I  F +F+++ K 
Sbjct: 1   MGQTTTKADLVNVIAQRTGLTKNETESVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKN 60

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
            R  RN +T ++V ++P+ V  FK S   K  + + ++  K
Sbjct: 61  LRQARNPRTGEKVTVEPKNVPTFKISKEFKHAVSESLKANK 101


>gi|56963393|ref|YP_175124.1| DNA-binding protein HU [Bacillus clausii KSM-K16]
 gi|56909636|dbj|BAD64163.1| DNA-binding protein HU [Bacillus clausii KSM-K16]
          Length = 91

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 56/86 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ ++S++  +S+KD+++ V  +FN I +S V+G  +++  F +F V+++ +R G
Sbjct: 1  MNKTDLINAVSEQAEISKKDASKAVDAVFNGITESLVKGAKVQLVGFGSFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I   +   FK    LK
Sbjct: 61 RNPQTGEEIEIPATKNPAFKPGKQLK 86


>gi|315634292|ref|ZP_07889579.1| integration host factor subunit alpha [Aggregatibacter segnis
          ATCC 33393]
 gi|315476882|gb|EFU67627.1| integration host factor subunit alpha [Aggregatibacter segnis
          ATCC 33393]
          Length = 98

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ +L +++ ++F LS++++   V + F EI  +   G  +K+S F  F ++ K SR 
Sbjct: 2  TLTKVELAENLIEKFHLSKREAKDLVESFFEEIRIALETGNDVKLSGFGNFELRDKSSRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  RRVVVFK    L+ R+
Sbjct: 62 GRNPKTGESVPVSARRVVVFKPGQKLRNRV 91


>gi|91223955|ref|ZP_01259219.1| integration host factor alpha subunit [Vibrio alginolyticus
          12G01]
 gi|262394474|ref|YP_003286328.1| integration host factor subunit alpha [Vibrio sp. Ex25]
 gi|269966318|ref|ZP_06180405.1| integration host factor, alpha subunit [Vibrio alginolyticus 40B]
 gi|91191447|gb|EAS77712.1| integration host factor alpha subunit [Vibrio alginolyticus
          12G01]
 gi|262338068|gb|ACY51863.1| integration host factor alpha subunit [Vibrio sp. Ex25]
 gi|269829057|gb|EEZ83304.1| integration host factor, alpha subunit [Vibrio alginolyticus 40B]
          Length = 98

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L +++  + G S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAELAENLFDKLGFSKRDAKETVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARV 91


>gi|254481702|ref|ZP_05094945.1| integration host factor, alpha subunit [marine gamma
          proteobacterium HTCC2148]
 gi|214037831|gb|EEB78495.1| integration host factor, alpha subunit [marine gamma
          proteobacterium HTCC2148]
          Length = 102

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 52/92 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S++ + + +E GL+++++   V   F EI       E +K+S F  F ++ K  R 
Sbjct: 3  ALTKSEMAERLFEELGLNKREAKEIVELFFEEIRACLENNEQVKLSGFGNFDLRDKSQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +E+ I  RRVV F+    LK R+ +
Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKARVEE 94


>gi|134104523|pdb|2IIF|A Chain A, Single Chain Integration Host Factor Mutant Protein
           (Scihf2- K45ae) In Complex With Dna
          Length = 204

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 56/101 (55%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S  +T++++ + +  + GLS++D+   V   F EI  +   GE +++S F  F ++ K  
Sbjct: 44  SGGLTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVELSGFGNFDLRDKNQ 103

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           R GRN +T +++ I  RRVV F+    LK R+ +   G + 
Sbjct: 104 RPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENAGGGERI 144


>gi|30248955|ref|NP_841025.1| integration host factor subunit alpha [Nitrosomonas europaea ATCC
          19718]
 gi|81722208|sp|Q82VV7|IHFA_NITEU RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|30138572|emb|CAD84863.1| Bacterial histone-like DNA-binding protein [Nitrosomonas europaea
          ATCC 19718]
          Length = 102

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 54/96 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L   + +  GL+++++   V   + E+  +   G+ +K+S F  F ++ K  R 
Sbjct: 2  ALTKAELTDLLFENIGLNKREAKEIVECFYEEMRAALQNGDGVKLSGFGNFQLRTKPQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T +E+ I  RRVV F AS  LK  +  + RG
Sbjct: 62 GRNPKTGEEIPISARRVVTFHASQKLKSMVEANYRG 97


>gi|239996231|ref|ZP_04716755.1| integration host factor subunit alpha [Alteromonas macleodii ATCC
          27126]
          Length = 99

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ G++++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAEHLFEKLGINKRDAKDLVELFFEEIKGALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPIKARRVVTFRPGQKLKSRV 91


>gi|183598822|ref|ZP_02960315.1| hypothetical protein PROSTU_02254 [Providencia stuartii ATCC
          25827]
 gi|188021030|gb|EDU59070.1| hypothetical protein PROSTU_02254 [Providencia stuartii ATCC
          25827]
          Length = 98

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ +++ ++ G+S++D+   V + F E+  S   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSENLFEKLGVSKRDAKDLVESFFEEVRLSLENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|301059179|ref|ZP_07200119.1| integration host factor subunit alpha [delta proteobacterium
          NaphS2]
 gi|300446727|gb|EFK10552.1| integration host factor subunit alpha [delta proteobacterium
          NaphS2]
          Length = 94

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  ++ SI  + GLS+  S      L   I ++   GE + IS F  F VK+K SR 
Sbjct: 2  ALTKEKIIDSIYHQVGLSKSQSRAAAEGLLEIIKETLENGEDLLISGFGKFLVKEKASRR 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QT +++++  RRVVVFK S +L+ +I
Sbjct: 62 GRNPQTTEDLQLRARRVVVFKTSGVLRDKI 91


>gi|118595083|ref|ZP_01552430.1| integration host factor subunit alpha [Methylophilales bacterium
           HTCC2181]
 gi|118440861|gb|EAV47488.1| integration host factor subunit alpha [Methylophilales bacterium
           HTCC2181]
          Length = 100

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 57/99 (57%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L + +  + GL++ ++   V   F EI  +   G+++K+S F  F ++ K  R 
Sbjct: 2   TLTKAELSEILFDQVGLNKSEAKEMVEAFFEEIRSALENGDSVKLSGFGNFDLRTKAERP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           GRN +T +E+ I  RRVV F +S  LK  + +   G++ 
Sbjct: 62  GRNPKTGEEIPIKARRVVTFHSSQKLKTSVEEKTAGKQT 100


>gi|326202457|ref|ZP_08192326.1| histone family protein DNA-binding protein [Clostridium
          papyrosolvens DSM 2782]
 gi|325987575|gb|EGD48402.1| histone family protein DNA-binding protein [Clostridium
          papyrosolvens DSM 2782]
          Length = 91

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 55/89 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV  ++++ GLS+KDS + +  +   + ++   G+ +++  F +F VKQ+ +R G
Sbjct: 1  MNKSELVDKMAEKSGLSKKDSDKALNAMLESVEEALTSGDKVQLIGFGSFEVKQRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +  VFKA   LK+ I
Sbjct: 61 RNPQTMEEINIPESKAPVFKAGKDLKEMI 89


>gi|116747454|ref|YP_844141.1| histone family protein DNA-binding protein [Syntrophobacter
          fumaroxidans MPOB]
 gi|116696518|gb|ABK15706.1| histone family protein DNA-binding protein [Syntrophobacter
          fumaroxidans MPOB]
          Length = 95

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++ +V+++  +   ++ +S + + TLF  +  +   GE + IS F  F VK+K  R 
Sbjct: 2  TLTKAHIVENLFAKNIFTKTESAQIIETLFEIVKQTLEHGEDVLISGFGKFSVKEKNQRR 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QT   + + PR+VV FK S +L++RI
Sbjct: 62 GRNPQTGDPIMLSPRKVVTFKCSGVLRERI 91


>gi|261821457|ref|YP_003259563.1| integration host factor subunit alpha [Pectobacterium wasabiae
          WPP163]
 gi|261605470|gb|ACX87956.1| integration host factor, alpha subunit [Pectobacterium wasabiae
          WPP163]
          Length = 98

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|319776256|ref|YP_004138744.1| integration host factor (IHF), DNA-binding protein subunit alpha
          [Haemophilus influenzae F3047]
 gi|329123395|ref|ZP_08251959.1| integration host factor subunit alpha [Haemophilus aegyptius ATCC
          11116]
 gi|317450847|emb|CBY87071.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Haemophilus influenzae F3047]
 gi|327470977|gb|EGF16432.1| integration host factor subunit alpha [Haemophilus aegyptius ATCC
          11116]
          Length = 96

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+ D+V+ +S ++ LS++D+   V     EI  S   G+ +K+S F  F ++ K SR 
Sbjct: 3  TITKIDIVEYLSDKYHLSKQDTKNVVENFLEEIRLSLESGQDVKLSGFGNFELRDKSSRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  RRVV FK    L+ R+
Sbjct: 63 GRNPKTGDVVPVSARRVVAFKPGQKLRARV 92


>gi|52425144|ref|YP_088281.1| HimA protein [Mannheimia succiniciproducens MBEL55E]
 gi|81691393|sp|Q65TL4|IHFA_MANSM RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|52307196|gb|AAU37696.1| HimA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 98

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ +L  ++ ++ GL++ ++   V   F EI  +  +G  +K+S F  F +++K SR 
Sbjct: 2  TLTKVELADNLIEKHGLNKSEAKALVEDFFEEIRVALEKGNDVKLSGFGNFELREKASRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  RRVVVFK    L+ R+
Sbjct: 62 GRNPKTGESVPVSARRVVVFKPGQKLRARV 91


>gi|332686553|ref|YP_004456327.1| DNA-binding protein HBsu [Melissococcus plutonius ATCC 35311]
 gi|332370562|dbj|BAK21518.1| DNA-binding protein HBsu [Melissococcus plutonius ATCC 35311]
          Length = 91

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 53/87 (60%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++L+ +++   GLS+KD+T  V  +F  I +S  +GE +++  F  F V+++ +R GRN
Sbjct: 4  KAELIDNVASTTGLSKKDATSAVDAVFATIQESLAKGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT  E++I+  +V  FK    LK  +
Sbjct: 64 PQTGDEIQIEASKVPAFKPGKALKDAV 90


>gi|238919788|ref|YP_002933303.1| integration host factor subunit alpha [Edwardsiella ictaluri
          93-146]
 gi|259491531|sp|C5B852|IHFA_EDWI9 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|238869357|gb|ACR69068.1| integration host factor, alpha subunit, putative [Edwardsiella
          ictaluri 93-146]
          Length = 98

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKCRV 91


>gi|224826508|ref|ZP_03699609.1| integration host factor, alpha subunit [Lutiella nitroferrum
          2002]
 gi|224601109|gb|EEG07291.1| integration host factor, alpha subunit [Lutiella nitroferrum
          2002]
          Length = 98

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 53/87 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+++L   +  + GL+++++   V + F EI  +   G+++K+S F  F ++ K  R 
Sbjct: 2  TLTKAELADLLFDKVGLNKREAKDMVESFFEEIRQALESGDSVKLSGFGNFQLRDKPQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T +E+ I  RRVV F AS  LK
Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLK 88


>gi|121594811|ref|YP_986707.1| integration host factor subunit beta [Acidovorax sp. JS42]
 gi|222110590|ref|YP_002552854.1| integration host factor subunit beta [Acidovorax ebreus TPSY]
 gi|120606891|gb|ABM42631.1| integration host factor, beta subunit [Acidovorax sp. JS42]
 gi|221730034|gb|ACM32854.1| integration host factor, beta subunit [Acidovorax ebreus TPSY]
          Length = 103

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDLV+ ++  FG L+++D+   V T+ + + D+ VRG  I+I  F +F V ++  R+
Sbjct: 1  MTRSDLVEELAARFGQLTQRDAEYAVKTILDAVSDALVRGHRIEIRGFGSFSVNRRPPRM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V I  +RV  FK    L++ +
Sbjct: 61 GRNPRSGEAVHIPEKRVPHFKPGKALRETV 90


>gi|311030279|ref|ZP_07708369.1| DNA-binding protein HU [Bacillus sp. m3-13]
          Length = 90

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 55/89 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ ++++   LS+KD+T+ V  +F+ I D+   G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAEASELSKKDATKAVDAVFDTILDALKNGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FK    LK  +
Sbjct: 61 RNPQTGEEIEIAASKVPAFKPGKALKDAV 89


>gi|120611942|ref|YP_971620.1| histone family protein DNA-binding protein [Acidovorax citrulli
          AAC00-1]
 gi|120590406|gb|ABM33846.1| histone family protein DNA-binding protein [Acidovorax citrulli
          AAC00-1]
          Length = 109

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDLV+ ++  FG L+++D+   V T+ + + D+ VRG  I++  F +F V ++  R+
Sbjct: 1  MTRSDLVEELAARFGQLTQRDAEAAVKTILDAVGDALVRGHRIEVRGFGSFSVNRRPPRM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V I  +RV  FK    L++ +
Sbjct: 61 GRNPRSGEAVHIPEKRVPHFKPGKALREAV 90


>gi|124267071|ref|YP_001021075.1| integration host factor alpha-subunit [Methylibium petroleiphilum
           PM1]
 gi|124259846|gb|ABM94840.1| integration host factor alpha-subunit [Methylibium petroleiphilum
           PM1]
          Length = 113

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 54/96 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + + +  GL++++S   V   F  I    V G+ +K+S F  F +++K  
Sbjct: 11  TPTLTKAELAELLFERLGLNKRESKDMVEAFFELIHGQLVEGQDVKLSGFGNFQIRRKAP 70

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           R GRN +T + + I  R VV F AS  LK  +  D+
Sbjct: 71  RPGRNPRTGEAIPIKARNVVTFHASHKLKGVVQGDI 106


>gi|292669443|ref|ZP_06602869.1| DNA-binding protein HU-beta [Selenomonas noxia ATCC 43541]
 gi|292648896|gb|EFF66868.1| DNA-binding protein HU-beta [Selenomonas noxia ATCC 43541]
          Length = 111

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 54/87 (62%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+ + +LV +++++ GL++KD+ + V  +F  +  +  +G+ I++  F TF VK + +R 
Sbjct: 21  TLNKQELVANVAEQAGLTKKDAEKAVNAVFETVKGALSKGDKIQLIGFGTFEVKARKARK 80

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN QT +E+ I   +  VFKA   LK
Sbjct: 81  GRNPQTGKEINIPASKNPVFKAGKALK 107


>gi|114766575|ref|ZP_01445531.1| integration host factor beta subunit [Pelagibaca bermudensis
          HTCC2601]
 gi|114541191|gb|EAU44243.1| integration host factor beta subunit [Roseovarius sp. HTCC2601]
          Length = 93

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I++E   L ++D  R V T+F EI ++  RG+ +++  F  F VK++ +R+
Sbjct: 1  MIRSELIQKIAEENPHLYQRDVERIVNTIFEEITNAMARGDRVELRGFGAFSVKKRDARL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V+++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGEAVEVEEKHVPFFKTGKLLRDRL 90


>gi|88810671|ref|ZP_01125928.1| Integration host factor, alpha subunit [Nitrococcus mobilis
          Nb-231]
 gi|88792301|gb|EAR23411.1| Integration host factor, alpha subunit [Nitrococcus mobilis
          Nb-231]
          Length = 100

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  E GL+++++   V + F EI  +  +G  +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAERLFDELGLNKREAKELVESFFEEIRCALEQGTPVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEEIPICARRVVTFRPGQKLKARV 91


>gi|119356262|ref|YP_910906.1| histone family protein DNA-binding protein [Chlorobium
          phaeobacteroides DSM 266]
 gi|119353611|gb|ABL64482.1| histone family protein DNA-binding protein [Chlorobium
          phaeobacteroides DSM 266]
          Length = 102

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 55/98 (56%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M  T T++DLV  I+   GL++ ++   V  LF  I DS   G+ I+I  F +F+++ K 
Sbjct: 1  MGTTTTKADLVNVIAHRTGLTKNETEAVVDCLFESIIDSLKSGKRIEIRGFGSFNIRHKN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           R  RN +T ++V +DP+ V  FK S   K  + + ++
Sbjct: 61 LRQARNPRTGEKVTVDPKNVPTFKISKEFKHAVSESLK 98


>gi|329118112|ref|ZP_08246824.1| integration host factor subunit alpha [Neisseria bacilliformis
          ATCC BAA-1200]
 gi|327465772|gb|EGF12045.1| integration host factor subunit alpha [Neisseria bacilliformis
          ATCC BAA-1200]
          Length = 95

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          LV  +SK   +S+ D+   V   F EI  +  RGE IKIS F  F ++ K  R GRN +T
Sbjct: 5  LVDKVSK---VSKNDAKEIVELFFEEIRTTLARGEEIKISGFGNFQLRDKPQRPGRNPKT 61

Query: 70 NQEVKIDPRRVVVFKASSILK 90
           +EV I  RRVV F AS  LK
Sbjct: 62 GEEVPITARRVVTFHASQKLK 82


>gi|163801038|ref|ZP_02194938.1| integration host factor alpha subunit [Vibrio sp. AND4]
 gi|159175387|gb|EDP60184.1| integration host factor alpha subunit [Vibrio sp. AND4]
          Length = 98

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 51/90 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L + +  + G S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAELAEDLFDKLGFSKRDAKETVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARV 91


>gi|88859784|ref|ZP_01134424.1| integration host factor (IHF), alpha subunit, DNA-bending
          protein, DNA replication [Pseudoalteromonas tunicata
          D2]
 gi|88818801|gb|EAR28616.1| integration host factor (IHF), alpha subunit, DNA-bending
          protein, DNA replication [Pseudoalteromonas tunicata
          D2]
          Length = 99

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + +  + G+++KD+   V + F  I  +   GE IK+S F  F ++ K  R 
Sbjct: 2  ALTKADIAEHLFVKLGINKKDAKELVESFFENIRAALESGEQIKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRV 91


>gi|260431167|ref|ZP_05785138.1| integration host factor, beta subunit [Silicibacter
          lacuscaerulensis ITI-1157]
 gi|260414995|gb|EEX08254.1| integration host factor, beta subunit [Silicibacter
          lacuscaerulensis ITI-1157]
          Length = 94

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ E   L ++D  R V T+F EI D+  RG+ +++  F  F VK++ +RV
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTVFEEITDAMARGDRVELRGFGAFSVKKRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V+++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGETVQVEEKCVPFFKTGKLLRDRL 90


>gi|228900190|ref|ZP_04064422.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222]
 gi|228907242|ref|ZP_04071102.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
 gi|228914185|ref|ZP_04077801.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis
          BGSC 4CC1]
 gi|228926640|ref|ZP_04089709.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228945209|ref|ZP_04107565.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228964584|ref|ZP_04125693.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str.
          T04001]
 gi|228971603|ref|ZP_04132226.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228990624|ref|ZP_04150589.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442]
 gi|228996722|ref|ZP_04156359.1| DNA-binding protein HU [Bacillus mycoides Rock3-17]
 gi|229004383|ref|ZP_04162146.1| DNA-binding protein HU [Bacillus mycoides Rock1-4]
 gi|229010917|ref|ZP_04168113.1| DNA-binding protein HU [Bacillus mycoides DSM 2048]
 gi|229016866|ref|ZP_04173794.1| DNA-binding protein HU [Bacillus cereus AH1273]
 gi|229023072|ref|ZP_04179586.1| DNA-binding protein HU [Bacillus cereus AH1272]
 gi|229058245|ref|ZP_04196633.1| DNA-binding protein HU [Bacillus cereus AH603]
 gi|229069162|ref|ZP_04202453.1| DNA-binding protein HU [Bacillus cereus F65185]
 gi|229084613|ref|ZP_04216882.1| DNA-binding protein HU [Bacillus cereus Rock3-44]
 gi|229090571|ref|ZP_04221806.1| DNA-binding protein HU [Bacillus cereus Rock3-42]
 gi|229121152|ref|ZP_04250389.1| DNA-binding protein HU [Bacillus cereus 95/8201]
 gi|229126923|ref|ZP_04255934.1| DNA-binding protein HU [Bacillus cereus BDRD-Cer4]
 gi|229132417|ref|ZP_04261271.1| DNA-binding protein HU [Bacillus cereus BDRD-ST196]
 gi|229138303|ref|ZP_04266898.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26]
 gi|229155175|ref|ZP_04283287.1| DNA-binding protein HU [Bacillus cereus ATCC 4342]
 gi|229160560|ref|ZP_04288555.1| DNA-binding protein HU [Bacillus cereus R309803]
 gi|229172247|ref|ZP_04299811.1| DNA-binding protein HU [Bacillus cereus MM3]
 gi|229189691|ref|ZP_04316705.1| DNA-binding protein HU [Bacillus cereus ATCC 10876]
 gi|229195810|ref|ZP_04322570.1| DNA-binding protein HU [Bacillus cereus m1293]
 gi|228587707|gb|EEK45765.1| DNA-binding protein HU [Bacillus cereus m1293]
 gi|228593740|gb|EEK51545.1| DNA-binding protein HU [Bacillus cereus ATCC 10876]
 gi|228611235|gb|EEK68493.1| DNA-binding protein HU [Bacillus cereus MM3]
 gi|228622970|gb|EEK79801.1| DNA-binding protein HU [Bacillus cereus R309803]
 gi|228628302|gb|EEK85017.1| DNA-binding protein HU [Bacillus cereus ATCC 4342]
 gi|228645195|gb|EEL01432.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26]
 gi|228651123|gb|EEL07104.1| DNA-binding protein HU [Bacillus cereus BDRD-ST196]
 gi|228656523|gb|EEL12350.1| DNA-binding protein HU [Bacillus cereus BDRD-Cer4]
 gi|228662271|gb|EEL17874.1| DNA-binding protein HU [Bacillus cereus 95/8201]
 gi|228692774|gb|EEL46498.1| DNA-binding protein HU [Bacillus cereus Rock3-42]
 gi|228698689|gb|EEL51405.1| DNA-binding protein HU [Bacillus cereus Rock3-44]
 gi|228713914|gb|EEL65798.1| DNA-binding protein HU [Bacillus cereus F65185]
 gi|228720109|gb|EEL71693.1| DNA-binding protein HU [Bacillus cereus AH603]
 gi|228738218|gb|EEL88700.1| DNA-binding protein HU [Bacillus cereus AH1272]
 gi|228744427|gb|EEL94501.1| DNA-binding protein HU [Bacillus cereus AH1273]
 gi|228750317|gb|EEM00147.1| DNA-binding protein HU [Bacillus mycoides DSM 2048]
 gi|228756868|gb|EEM06150.1| DNA-binding protein HU [Bacillus mycoides Rock1-4]
 gi|228763041|gb|EEM11951.1| DNA-binding protein HU [Bacillus mycoides Rock3-17]
 gi|228769150|gb|EEM17748.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442]
 gi|228788126|gb|EEM36082.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228795118|gb|EEM42615.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str.
          T04001]
 gi|228814444|gb|EEM60709.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228833016|gb|EEM78584.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228845389|gb|EEM90424.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis
          BGSC 4CC1]
 gi|228852382|gb|EEM97176.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
 gi|228859460|gb|EEN03888.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222]
          Length = 93

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 56/89 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ ++++   LS+KD+T+ V  +F+ I ++  +G+ +++  F  F V+++ +R G
Sbjct: 4  MNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FK    LK  +
Sbjct: 64 RNPQTGEEIEIAASKVPAFKPGKALKDAV 92


>gi|320539031|ref|ZP_08038706.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Serratia symbiotica str. Tucson]
 gi|320030964|gb|EFW12968.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Serratia symbiotica str. Tucson]
          Length = 98

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKDLVELFFEEVRRALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F++   LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRSGQKLKSRV 91


>gi|257793014|ref|YP_003186413.1| histone family protein DNA-binding protein [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479706|gb|ACV60024.1| histone family protein DNA-binding protein [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 91

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL++  ++E GLS+KD    + TLF+ I  +   GE ++I  F TF ++++ +R  
Sbjct: 1  MNKRDLIRKTAEETGLSQKDCEAVINTLFDTIRKTVESGEKVQIIGFGTFELRERAARTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + V++  RRV  FK  + LK+ +
Sbjct: 61 RNPRTGEAVEVPARRVPAFKPGAELKQAV 89


>gi|229822881|ref|ZP_04448951.1| hypothetical protein GCWU000282_00171 [Catonella morbi ATCC
          51271]
 gi|229787694|gb|EEP23808.1| hypothetical protein GCWU000282_00171 [Catonella morbi ATCC
          51271]
          Length = 91

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 53/84 (63%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV+ ++ +  L++KD T  V  LF  I ++  +GE +++  F TF V+++ +R GRN
Sbjct: 4  KAELVEKVAAKTNLTKKDVTATVEALFETIQETLSKGEKVQVIGFGTFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E+KI   +V  FKA   LK
Sbjct: 64 PQTGKEIKIAASKVPGFKAGKALK 87


>gi|254282572|ref|ZP_04957540.1| integration host factor, alpha subunit [gamma proteobacterium
          NOR51-B]
 gi|219678775|gb|EED35124.1| integration host factor, alpha subunit [gamma proteobacterium
          NOR51-B]
          Length = 104

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 51/90 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S++ + + +E GL+++++   V   F EI       E +K+S F  F ++ K  R 
Sbjct: 3  ALTKSEMAEKLFEELGLNKREAKELVEQFFEEIRICLENNEQMKLSGFGNFDLRDKSQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK R+
Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKARV 92


>gi|241764284|ref|ZP_04762314.1| histone family protein DNA-binding protein [Acidovorax delafieldii
           2AN]
 gi|241366353|gb|EER60883.1| histone family protein DNA-binding protein [Acidovorax delafieldii
           2AN]
          Length = 116

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +  +T++ L   +  + GL++++S   +   F+ I    V G+ +K+S F  F ++ K  
Sbjct: 21  TPALTKAQLADLLFDQIGLNKRESKDMIDAFFDLIAQRLVDGKDVKLSGFGNFQIRTKAP 80

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F ASS LK++I
Sbjct: 81  RPGRNPRTGEAIPIQARRVVTFHASSKLKEQI 112


>gi|189345899|ref|YP_001942428.1| histone family protein DNA-binding protein [Chlorobium limicola
          DSM 245]
 gi|189340046|gb|ACD89449.1| histone family protein DNA-binding protein [Chlorobium limicola
          DSM 245]
          Length = 102

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 57/98 (58%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M  T T++DLV +I+ + G+++ ++   V  LF  I +S   G+ I+I  F +F+++ K 
Sbjct: 1  MGNTTTKADLVNAIAHKTGMTKNETEAVVDCLFESIIESLKAGKRIEIRGFGSFNIRHKN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           R  RN +T ++V +DP+ V  FK S   K  + + ++
Sbjct: 61 LRQARNPRTGEKVTVDPKNVPTFKISKEFKHAVSESLK 98


>gi|254467817|ref|ZP_05081223.1| integration host factor, alpha subunit [beta proteobacterium
          KB13]
 gi|207086627|gb|EDZ63910.1| integration host factor, alpha subunit [beta proteobacterium
          KB13]
          Length = 98

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+++L   + ++ GL++ +S   V   F +I  +   GE++K+S F  F ++ K  R 
Sbjct: 2  TLTKANLSNLLFEQVGLNKTESKEMVEAFFEQIKIALENGESVKLSGFGNFELRTKSERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +EV I  RRVV F +S  LK  +
Sbjct: 62 GRNPKTGEEVPIKARRVVTFHSSQKLKSSV 91


>gi|91792960|ref|YP_562611.1| integration host factor, alpha subunit [Shewanella denitrificans
           OS217]
 gi|123356864|sp|Q12NT8|IHFA_SHEDO RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|91714962|gb|ABE54888.1| integration host factor, alpha subunit [Shewanella denitrificans
           OS217]
          Length = 99

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 56/98 (57%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ + + +  GL+++ +   V + F EI ++   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAEMAEHLFETLGLNKRVAKEMVESFFEEIREALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +++ I  RRVV F+    LK R+     G+K
Sbjct: 62  GRNPKTGEDIPISARRVVTFRPGQKLKARVEAANSGKK 99


>gi|228994303|ref|ZP_04154194.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442]
 gi|228765453|gb|EEM14116.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442]
          Length = 93

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 60/91 (65%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K + +++L+KS+++   +S+K+++  V ++F+ I ++   G+ +++  F TF V+++ +R
Sbjct: 2  KKMNKTELIKSVAQTADISQKEASAAVQSVFDTIANALQTGDKVQLIGFGTFEVRERAAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN QT +E++I   +V  FKA   LK+ +
Sbjct: 62 TGRNPQTGEEIQIAAGKVPAFKAGKELKEAV 92


>gi|145633212|ref|ZP_01788943.1| translation initiation factor IF-3 [Haemophilus influenzae 3655]
 gi|145634922|ref|ZP_01790629.1| integration host factor alpha-subunit [Haemophilus influenzae
          PittAA]
 gi|229845127|ref|ZP_04465262.1| integration host factor alpha-subunit [Haemophilus influenzae
          6P18H1]
 gi|144986058|gb|EDJ92648.1| translation initiation factor IF-3 [Haemophilus influenzae 3655]
 gi|145267788|gb|EDK07785.1| integration host factor alpha-subunit [Haemophilus influenzae
          PittAA]
 gi|229811963|gb|EEP47657.1| integration host factor alpha-subunit [Haemophilus influenzae
          6P18H1]
          Length = 96

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+ D+++ +S ++ LS++D+   V     EI  S   G+ +K+S F  F ++ K SR 
Sbjct: 3  TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRLSLESGQDVKLSGFGNFELRDKSSRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  RRVV FK    L+ R+
Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARV 92


>gi|260914041|ref|ZP_05920514.1| integration host factor subunit alpha [Pasteurella dagmatis ATCC
          43325]
 gi|260631674|gb|EEX49852.1| integration host factor subunit alpha [Pasteurella dagmatis ATCC
          43325]
          Length = 98

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ +L +++ ++  L+++D+   V   F EI  +   GE +K+S F  F ++ K SR 
Sbjct: 2  TLTKVELAENLIEKLNLNKRDAKELVENFFEEIRVALETGEDVKLSGFGNFELRDKASRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  RRVV FK    L+ R+
Sbjct: 62 GRNPKTGESVPVSARRVVSFKPGQKLRTRV 91


>gi|110597798|ref|ZP_01386081.1| Histone-like bacterial DNA-binding protein [Chlorobium
          ferrooxidans DSM 13031]
 gi|110340523|gb|EAT59006.1| Histone-like bacterial DNA-binding protein [Chlorobium
          ferrooxidans DSM 13031]
          Length = 102

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 55/98 (56%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M  T T++DLV  I+   GL++ ++   V  LF  I DS   G+ I+I  F +F+++ K 
Sbjct: 1  MGNTTTKADLVNVIAHRTGLTKNETESVVDCLFESIIDSLKSGKRIEIRGFGSFNIRYKN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           R  RN +T ++V +DP+ V  FK S   K  + + ++
Sbjct: 61 LRQARNPRTGEKVTVDPKNVPTFKISKEFKHAVSESLK 98


>gi|89900357|ref|YP_522828.1| histone-like protein DNA-binding protein [Rhodoferax
          ferrireducens T118]
 gi|89345094|gb|ABD69297.1| histone-like DNA-binding protein [Rhodoferax ferrireducens T118]
          Length = 103

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDL++ ++  FG L+R+D+   V  + + I D+ VRG  I+I  F +F +  +  R+
Sbjct: 1  MTRSDLIEELAARFGQLTRRDAEFAVKAILDAINDALVRGHRIEIRGFGSFAINHRPPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +  + V I  +RV+ FK    L++ +
Sbjct: 61 GRNPRNGESVAIPEKRVLHFKPGKALREAV 90


>gi|189500914|ref|YP_001960384.1| histone family protein DNA-binding protein [Chlorobium
          phaeobacteroides BS1]
 gi|189496355|gb|ACE04903.1| histone family protein DNA-binding protein [Chlorobium
          phaeobacteroides BS1]
          Length = 99

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 56/98 (57%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M  T T++DLV +IS   GL++ ++   V  LF+ I DS   G+ I+I  F +F+++ K 
Sbjct: 1  MGNTTTKADLVNTISHRTGLTKHETESVVDCLFDSIIDSLKAGKRIEIRGFGSFNIRYKN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           R+ RN +T ++V +D + V  FK S   K  +   ++
Sbjct: 61 ERLARNPRTGEKVSVDAKNVPTFKISKEFKSAVSQSLK 98


>gi|269958260|ref|YP_003328047.1| integration host factor, alpha subunit [Anaplasma centrale str.
          Israel]
 gi|269848089|gb|ACZ48733.1| integration host factor, alpha subunit [Anaplasma centrale str.
          Israel]
          Length = 98

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 56/93 (60%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++T+TR+ L  +I++E G+SR+D+   V  + +E+  S VR   +KISSF TF V +K 
Sbjct: 1  MAQTLTRAQLADTINREIGISREDALVLVGEMLDEMVSSLVRDGLLKISSFGTFKVIRKK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RV RN +T ++  +     V F  S  +K+ I
Sbjct: 61 ERVCRNPKTLEQFIVKEHNTVTFCPSVTMKRLI 93


>gi|163940149|ref|YP_001645033.1| histone family protein DNA-binding protein [Bacillus
          weihenstephanensis KBAB4]
 gi|229011627|ref|ZP_04168810.1| DNA-binding protein HU 1 [Bacillus mycoides DSM 2048]
 gi|229060025|ref|ZP_04197396.1| DNA-binding protein HU 1 [Bacillus cereus AH603]
 gi|229133208|ref|ZP_04262040.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST196]
 gi|229167194|ref|ZP_04294935.1| DNA-binding protein HU 1 [Bacillus cereus AH621]
 gi|163862346|gb|ABY43405.1| histone family protein DNA-binding protein [Bacillus
          weihenstephanensis KBAB4]
 gi|228616232|gb|EEK73316.1| DNA-binding protein HU 1 [Bacillus cereus AH621]
 gi|228650227|gb|EEL06230.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST196]
 gi|228719244|gb|EEL70852.1| DNA-binding protein HU 1 [Bacillus cereus AH603]
 gi|228749585|gb|EEL99427.1| DNA-binding protein HU 1 [Bacillus mycoides DSM 2048]
          Length = 90

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 59/89 (66%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LVK++++   +S+KD++  V ++F+ I ++   G+ +++  F TF V+++ +R G
Sbjct: 1  MNKTELVKNVAQSADISQKDASAAVQSVFDTIANALQSGDKVQLIGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FKA   LK+ +
Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAV 89


>gi|88706038|ref|ZP_01103746.1| Integration host factor alpha-subunit [Congregibacter litoralis
          KT71]
 gi|254515023|ref|ZP_05127084.1| integration host factor, alpha subunit [gamma proteobacterium
          NOR5-3]
 gi|88699752|gb|EAQ96863.1| Integration host factor alpha-subunit [Congregibacter litoralis
          KT71]
 gi|219677266|gb|EED33631.1| integration host factor, alpha subunit [gamma proteobacterium
          NOR5-3]
          Length = 101

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 52/92 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S++ + + +E GL+++++   V   F EI       E +K+S F  F ++ K  R 
Sbjct: 3  ALTKSEMAERLFEELGLNKREAKEIVELFFEEIRVCLENNEQVKLSGFGNFDLRDKNQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +E+ I  RRVV F+    LK R+ +
Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKARVEE 94


>gi|16273225|ref|NP_439464.1| integration host factor subunit alpha [Haemophilus influenzae Rd
          KW20]
 gi|68249973|ref|YP_249085.1| integration host factor subunit alpha [Haemophilus influenzae
          86-028NP]
 gi|145630800|ref|ZP_01786578.1| predicted transporter [Haemophilus influenzae R3021]
 gi|145641673|ref|ZP_01797250.1| hypothetical protein CGSHiR3021_01942 [Haemophilus influenzae
          R3021]
 gi|260581340|ref|ZP_05849156.1| integration host factor, alpha subunit [Haemophilus influenzae
          RdAW]
 gi|260582472|ref|ZP_05850263.1| integration host factor, alpha subunit [Haemophilus influenzae
          NT127]
 gi|319897114|ref|YP_004135309.1| integration host factor (ihf), DNA-binding protein, alpha subunit
          [Haemophilus influenzae F3031]
 gi|1170524|sp|P43723|IHFA_HAEIN RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|81335603|sp|Q4QKM2|IHFA_HAEI8 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|1574771|gb|AAC22959.1| integration host factor, alpha-subunit (himA) [Haemophilus
          influenzae Rd KW20]
 gi|68058172|gb|AAX88425.1| integration host factor alpha-subunit [Haemophilus influenzae
          86-028NP]
 gi|144983682|gb|EDJ91142.1| predicted transporter [Haemophilus influenzae R3021]
 gi|145273720|gb|EDK13589.1| hypothetical protein CGSHiR3021_01942 [Haemophilus influenzae
          22.4-21]
 gi|260092007|gb|EEW75954.1| integration host factor, alpha subunit [Haemophilus influenzae
          RdAW]
 gi|260094452|gb|EEW78349.1| integration host factor, alpha subunit [Haemophilus influenzae
          NT127]
 gi|309973174|gb|ADO96375.1| Integration host factor, alpha subunit [Haemophilus influenzae
          R2846]
 gi|317432618|emb|CBY80979.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Haemophilus influenzae F3031]
          Length = 96

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+ D+++ +S ++ LS++D+   V     EI  S   G+ +K+S F  F ++ K SR 
Sbjct: 3  TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRLSLESGQDVKLSGFGNFELRDKSSRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  RRVV FK    L+ R+
Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARV 92


>gi|145589020|ref|YP_001155617.1| integration host factor, alpha subunit [Polynucleobacter
          necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047426|gb|ABP34053.1| integration host factor, alpha subunit [Polynucleobacter
          necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 107

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 53/89 (59%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          S T+T+++L +++  + GL+++++   +   F+ I  S   G  +KIS F  F ++ K +
Sbjct: 7  SDTVTKNELSEALFDQVGLNKREAKDMIDAFFDRIGQSLEAGTEVKISGFGNFQLRNKSA 66

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          R GRN +T Q + I  RRVV F AS  LK
Sbjct: 67 RPGRNPKTGQMIPIAARRVVTFHASQKLK 95


>gi|322381812|ref|ZP_08055766.1| non-specific DNA-binding protein Hbsu/signal recognition
          particle-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
 gi|321154200|gb|EFX46522.1| non-specific DNA-binding protein Hbsu/signal recognition
          particle-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
          Length = 90

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+  +++   LS+KD+T+ V  +F  I ++   G+ +++  F  F V+++ +R G
Sbjct: 1  MNKSDLIAKVAEASELSKKDATKAVDAVFEAIAEALKEGDKVQLVGFGNFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FK    LK+ I
Sbjct: 61 RNPQTGEEIEIAASKVPAFKPGKALKEGI 89


>gi|167816064|ref|ZP_02447744.1| integration host factor subunit alpha [Burkholderia pseudomallei
           91]
          Length = 134

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 33  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 93  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 124


>gi|34496809|ref|NP_901024.1| integration host factor subunit alpha [Chromobacterium violaceum
          ATCC 12472]
 gi|81711870|sp|Q7NYC0|IHFA_CHRVO RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|34102664|gb|AAQ59029.1| integration host factor alpha-subunit [Chromobacterium violaceum
          ATCC 12472]
          Length = 100

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 53/87 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+++L   +  + GL+++++   V + F EI  +   G+++K+S F  F ++ K  R 
Sbjct: 2  TLTKAELADLLFDQVGLNKREAKDMVESFFEEIRLALESGDSVKLSGFGNFQLRDKPQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T +E+ I  RRVV F AS  LK
Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLK 88


>gi|83720646|ref|YP_443105.1| integration host factor subunit alpha [Burkholderia thailandensis
           E264]
 gi|167582112|ref|ZP_02374986.1| integration host factor subunit alpha [Burkholderia thailandensis
           TXDOH]
 gi|167620270|ref|ZP_02388901.1| integration host factor subunit alpha [Burkholderia thailandensis
           Bt4]
 gi|257139334|ref|ZP_05587596.1| integration host factor subunit alpha [Burkholderia thailandensis
           E264]
 gi|83654471|gb|ABC38534.1| integration host factor, alpha subunit [Burkholderia thailandensis
           E264]
          Length = 134

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 33  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 93  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 124


>gi|167562961|ref|ZP_02355877.1| integration host factor subunit alpha [Burkholderia oklahomensis
           EO147]
 gi|167570150|ref|ZP_02363024.1| integration host factor subunit alpha [Burkholderia oklahomensis
           C6786]
          Length = 134

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 33  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 93  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 124


>gi|30261605|ref|NP_843982.1| DNA-binding protein HU [Bacillus anthracis str. Ames]
 gi|42780711|ref|NP_977958.1| DNA-binding protein HU [Bacillus cereus ATCC 10987]
 gi|47526805|ref|YP_018154.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184437|ref|YP_027689.1| DNA-binding protein HU [Bacillus anthracis str. Sterne]
 gi|49481024|ref|YP_035726.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian
          str. 97-27]
 gi|52143837|ref|YP_082990.1| DNA-binding protein HU [Bacillus cereus E33L]
 gi|152975033|ref|YP_001374550.1| histone family protein DNA-binding protein [Bacillus cereus
          subsp. cytotoxis NVH 391-98]
 gi|163939425|ref|YP_001644309.1| histone family protein DNA-binding protein [Bacillus
          weihenstephanensis KBAB4]
 gi|165869502|ref|ZP_02214161.1| DNA-binding protein HU [Bacillus anthracis str. A0488]
 gi|167633255|ref|ZP_02391580.1| DNA-binding protein HU [Bacillus anthracis str. A0442]
 gi|167639174|ref|ZP_02397447.1| DNA-binding protein HU [Bacillus anthracis str. A0193]
 gi|170686317|ref|ZP_02877539.1| DNA-binding protein HU [Bacillus anthracis str. A0465]
 gi|170706435|ref|ZP_02896895.1| DNA-binding protein HU [Bacillus anthracis str. A0389]
 gi|177650638|ref|ZP_02933605.1| DNA-binding protein HU [Bacillus anthracis str. A0174]
 gi|190568652|ref|ZP_03021557.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I]
 gi|196033321|ref|ZP_03100733.1| DNA-binding protein HU [Bacillus cereus W]
 gi|196039102|ref|ZP_03106409.1| DNA-binding protein HU [Bacillus cereus NVH0597-99]
 gi|196046571|ref|ZP_03113795.1| DNA-binding protein HU [Bacillus cereus 03BB108]
 gi|206970635|ref|ZP_03231587.1| DNA-binding protein HU [Bacillus cereus AH1134]
 gi|206975002|ref|ZP_03235917.1| DNA-binding protein HU [Bacillus cereus H3081.97]
 gi|217959087|ref|YP_002337635.1| DNA-binding protein HU [Bacillus cereus AH187]
 gi|218233805|ref|YP_002366291.1| DNA-binding protein HU [Bacillus cereus B4264]
 gi|218896539|ref|YP_002444950.1| DNA-binding protein HU [Bacillus cereus G9842]
 gi|218902721|ref|YP_002450555.1| DNA-binding protein HU [Bacillus cereus AH820]
 gi|222095239|ref|YP_002529299.1| DNA-binding protein hu [Bacillus cereus Q1]
 gi|225863473|ref|YP_002748851.1| DNA-binding protein HU [Bacillus cereus 03BB102]
 gi|227815643|ref|YP_002815652.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684]
 gi|228920320|ref|ZP_04083667.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228932897|ref|ZP_04095763.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|229029289|ref|ZP_04185379.1| DNA-binding protein HU [Bacillus cereus AH1271]
 gi|229166456|ref|ZP_04294212.1| DNA-binding protein HU [Bacillus cereus AH621]
 gi|229601774|ref|YP_002866013.1| DNA-binding protein HU [Bacillus anthracis str. A0248]
 gi|254683097|ref|ZP_05146958.1| DNA-binding protein HU [Bacillus anthracis str. CNEVA-9066]
 gi|254723685|ref|ZP_05185471.1| DNA-binding protein HU [Bacillus anthracis str. A1055]
 gi|254734446|ref|ZP_05192158.1| DNA-binding protein HU [Bacillus anthracis str. Western North
          America USA6153]
 gi|254740857|ref|ZP_05198545.1| DNA-binding protein HU [Bacillus anthracis str. Kruger B]
 gi|254755095|ref|ZP_05207129.1| DNA-binding protein HU [Bacillus anthracis str. Vollum]
 gi|254759632|ref|ZP_05211656.1| DNA-binding protein HU [Bacillus anthracis str. Australia 94]
 gi|296502179|ref|YP_003663879.1| DNA-binding protein HU [Bacillus thuringiensis BMB171]
 gi|300117462|ref|ZP_07055252.1| DNA-binding protein HU [Bacillus cereus SJ1]
 gi|301053147|ref|YP_003791358.1| DNA-binding protein HU [Bacillus anthracis CI]
 gi|30255459|gb|AAP25468.1| DNA-binding protein HU [Bacillus anthracis str. Ames]
 gi|42736631|gb|AAS40566.1| DNA-binding protein HU [Bacillus cereus ATCC 10987]
 gi|47501953|gb|AAT30629.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178364|gb|AAT53740.1| DNA-binding protein HU [Bacillus anthracis str. Sterne]
 gi|49332580|gb|AAT63226.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian
          str. 97-27]
 gi|51977306|gb|AAU18856.1| DNA-binding protein HU [Bacillus cereus E33L]
 gi|152023785|gb|ABS21555.1| histone family protein DNA-binding protein [Bacillus cytotoxicus
          NVH 391-98]
 gi|163861622|gb|ABY42681.1| histone family protein DNA-binding protein [Bacillus
          weihenstephanensis KBAB4]
 gi|164714942|gb|EDR20460.1| DNA-binding protein HU [Bacillus anthracis str. A0488]
 gi|167512964|gb|EDR88337.1| DNA-binding protein HU [Bacillus anthracis str. A0193]
 gi|167531293|gb|EDR93971.1| DNA-binding protein HU [Bacillus anthracis str. A0442]
 gi|170128533|gb|EDS97400.1| DNA-binding protein HU [Bacillus anthracis str. A0389]
 gi|170670014|gb|EDT20755.1| DNA-binding protein HU [Bacillus anthracis str. A0465]
 gi|172083782|gb|EDT68842.1| DNA-binding protein HU [Bacillus anthracis str. A0174]
 gi|190560252|gb|EDV14232.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I]
 gi|195993755|gb|EDX57711.1| DNA-binding protein HU [Bacillus cereus W]
 gi|196022504|gb|EDX61187.1| DNA-binding protein HU [Bacillus cereus 03BB108]
 gi|196030247|gb|EDX68847.1| DNA-binding protein HU [Bacillus cereus NVH0597-99]
 gi|206734271|gb|EDZ51441.1| DNA-binding protein HU [Bacillus cereus AH1134]
 gi|206747021|gb|EDZ58413.1| DNA-binding protein HU [Bacillus cereus H3081.97]
 gi|217064829|gb|ACJ79079.1| DNA-binding protein HU [Bacillus cereus AH187]
 gi|218161762|gb|ACK61754.1| DNA-binding protein HU [Bacillus cereus B4264]
 gi|218539449|gb|ACK91847.1| DNA-binding protein HU [Bacillus cereus AH820]
 gi|218542908|gb|ACK95302.1| DNA-binding protein HU [Bacillus cereus G9842]
 gi|221239297|gb|ACM12007.1| DNA-binding protein HU [Bacillus cereus Q1]
 gi|225788998|gb|ACO29215.1| DNA-binding protein HU [Bacillus cereus 03BB102]
 gi|227005725|gb|ACP15468.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684]
 gi|228617030|gb|EEK74099.1| DNA-binding protein HU [Bacillus cereus AH621]
 gi|228732037|gb|EEL82929.1| DNA-binding protein HU [Bacillus cereus AH1271]
 gi|228826763|gb|EEM72531.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228839343|gb|EEM84637.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|229266182|gb|ACQ47819.1| DNA-binding protein HU [Bacillus anthracis str. A0248]
 gi|296323231|gb|ADH06159.1| DNA-binding protein HU [Bacillus thuringiensis BMB171]
 gi|298725297|gb|EFI65949.1| DNA-binding protein HU [Bacillus cereus SJ1]
 gi|300375316|gb|ADK04220.1| DNA-binding protein HU [Bacillus cereus biovar anthracis str. CI]
 gi|324325626|gb|ADY20886.1| DNA-binding protein HU [Bacillus thuringiensis serovar finitimus
          YBT-020]
 gi|326939227|gb|AEA15123.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 90

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 56/89 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ ++++   LS+KD+T+ V  +F+ I ++  +G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FK    LK  +
Sbjct: 61 RNPQTGEEIEIAASKVPAFKPGKALKDAV 89


>gi|254466998|ref|ZP_05080409.1| integration host factor, beta subunit [Rhodobacterales bacterium
          Y4I]
 gi|206687906|gb|EDZ48388.1| integration host factor, beta subunit [Rhodobacterales bacterium
          Y4I]
          Length = 94

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ E   L ++D  R V T+F E+ ++  RG+ +++  F  F VK++ SRV
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTNAMARGDRVELRGFGAFSVKKRDSRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRL 90


>gi|162456892|ref|YP_001619259.1| integration host factor alpha-subunit [Sorangium cellulosum 'So
          ce 56']
 gi|161167474|emb|CAN98779.1| integration host factor alpha-subunit [Sorangium cellulosum 'So
          ce 56']
          Length = 101

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T++++V+++ S+  G S+K+S   V  +F  + ++  RGE IKIS F  F ++ K  R 
Sbjct: 1  MTKAEIVQAVYSRLGGFSKKESADLVDLVFETMKETLGRGEKIKISGFGNFVLRDKRQRQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QT   + I  RRV+ FKAS ILK+ +
Sbjct: 61 GRNPQTGDPILITERRVLNFKASQILKQAL 90


>gi|71278524|ref|YP_269693.1| integration host factor subunit alpha [Colwellia psychrerythraea
          34H]
 gi|123747380|sp|Q47ZS6|IHFA_COLP3 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|71144264|gb|AAZ24737.1| integration host factor, alpha subunit [Colwellia psychrerythraea
          34H]
          Length = 97

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 55/92 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F EI ++   G+ +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEVAEHLFEKVGLSKRDAKDMVEIFFEEIRETLESGDQVKLSGFGNFDLRLKSERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  R+VV F+    LK R+ D
Sbjct: 62 GRNPKTGEDIPISARKVVTFRPGQKLKSRVED 93


>gi|229174387|ref|ZP_04301919.1| DNA-binding protein HU [Bacillus cereus MM3]
 gi|228608947|gb|EEK66237.1| DNA-binding protein HU [Bacillus cereus MM3]
          Length = 93

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 58/91 (63%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K + +++L+K++++   +S+K++T  + T+   I ++   GE +++  F TF V+++ +R
Sbjct: 2  KNMNKTELIKNVAQNAEISQKEATVVLQTVVESITNTLAAGEKVQLIGFGTFEVRERAAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN QT +E++I   +V  FKA   LK+ +
Sbjct: 62 TGRNPQTGEEMQIAASKVPAFKAGKELKEAV 92


>gi|225076633|ref|ZP_03719832.1| hypothetical protein NEIFLAOT_01683 [Neisseria flavescens
          NRL30031/H210]
 gi|241758592|ref|ZP_04756707.1| integration host factor, alpha subunit [Neisseria flavescens
          SK114]
 gi|261379897|ref|ZP_05984470.1| integration host factor, alpha subunit [Neisseria subflava
          NJ9703]
 gi|319637854|ref|ZP_07992620.1| integration host factor subunit alpha [Neisseria mucosa C102]
 gi|224952039|gb|EEG33248.1| hypothetical protein NEIFLAOT_01683 [Neisseria flavescens
          NRL30031/H210]
 gi|241321244|gb|EER57416.1| integration host factor, alpha subunit [Neisseria flavescens
          SK114]
 gi|284797599|gb|EFC52946.1| integration host factor, alpha subunit [Neisseria subflava
          NJ9703]
 gi|317401009|gb|EFV81664.1| integration host factor subunit alpha [Neisseria mucosa C102]
          Length = 100

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 4  TITRSDLVK-SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T+T+++L    + K   +++ D+   V   F EI  +  RGE IKIS F  F ++ K  R
Sbjct: 2  TLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLARGEEIKISGFGNFQLRDKPQR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN +T +EV I  RRVV F AS  LK
Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLK 89


>gi|85711630|ref|ZP_01042687.1| Bacterial nucleoid DNA-binding protein, IHF alpha subunit
          [Idiomarina baltica OS145]
 gi|85694490|gb|EAQ32431.1| Bacterial nucleoid DNA-binding protein, IHF alpha subunit
          [Idiomarina baltica OS145]
          Length = 98

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 51/90 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L + +  ++G+S++D+   V   F EI      GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAELAEVLFDKYGVSKQDAKDLVEAFFEEIRSVLESGEMVKLSGFGNFELRTKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV FK     K R+
Sbjct: 62 GRNPKTGEDIPISARRVVSFKPGQKFKSRV 91


>gi|254178583|ref|ZP_04885238.1| integration host factor alpha subunit [Burkholderia mallei ATCC
           10399]
 gi|160699622|gb|EDP89592.1| integration host factor alpha subunit [Burkholderia mallei ATCC
           10399]
          Length = 115

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 14  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 73

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 74  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 105


>gi|53719552|ref|YP_108538.1| integration host factor subunit alpha [Burkholderia pseudomallei
           K96243]
 gi|81690335|sp|Q63TM8|IHFA_BURPS RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|52209966|emb|CAH35938.1| integration host factor alpha-subunit [Burkholderia pseudomallei
           K96243]
          Length = 115

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 14  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 73

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 74  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 105


>gi|53725309|ref|YP_102781.1| integration host factor subunit alpha [Burkholderia mallei ATCC
           23344]
 gi|121600745|ref|YP_992860.1| integration host factor subunit alpha [Burkholderia mallei SAVP1]
 gi|124384579|ref|YP_001026200.1| integration host factor subunit alpha [Burkholderia mallei NCTC
           10229]
 gi|126450691|ref|YP_001080530.1| integration host factor subunit alpha [Burkholderia mallei NCTC
           10247]
 gi|134282277|ref|ZP_01768982.1| integration host factor alpha subunit [Burkholderia pseudomallei
           305]
 gi|167003084|ref|ZP_02268874.1| integration host factor alpha subunit [Burkholderia mallei PRL-20]
 gi|167719842|ref|ZP_02403078.1| integration host factor subunit alpha [Burkholderia pseudomallei
           DM98]
 gi|167824439|ref|ZP_02455910.1| integration host factor subunit alpha [Burkholderia pseudomallei 9]
 gi|167902953|ref|ZP_02490158.1| integration host factor subunit alpha [Burkholderia pseudomallei
           NCTC 13177]
 gi|217423737|ref|ZP_03455238.1| integration host factor alpha subunit [Burkholderia pseudomallei
           576]
 gi|237812022|ref|YP_002896473.1| integration host factor, alpha subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238562599|ref|ZP_00440142.2| integration host factor, alpha subunit [Burkholderia mallei GB8
           horse 4]
 gi|254179998|ref|ZP_04886597.1| integration host factor alpha subunit [Burkholderia pseudomallei
           1655]
 gi|254197506|ref|ZP_04903928.1| integration host factor alpha subunit [Burkholderia pseudomallei
           S13]
 gi|254199733|ref|ZP_04906099.1| integration host factor alpha subunit [Burkholderia mallei FMH]
 gi|254206055|ref|ZP_04912407.1| integration host factor alpha subunit [Burkholderia mallei JHU]
 gi|254358426|ref|ZP_04974699.1| integration host factor alpha subunit [Burkholderia mallei
           2002721280]
 gi|52428732|gb|AAU49325.1| integration host factor, alpha subunit [Burkholderia mallei ATCC
           23344]
 gi|121229555|gb|ABM52073.1| integration host factor, alpha subunit [Burkholderia mallei SAVP1]
 gi|124292599|gb|ABN01868.1| integration host factor, alpha subunit [Burkholderia mallei NCTC
           10229]
 gi|126243561|gb|ABO06654.1| integration host factor alpha subunit [Burkholderia mallei NCTC
           10247]
 gi|134246315|gb|EBA46404.1| integration host factor alpha subunit [Burkholderia pseudomallei
           305]
 gi|147749329|gb|EDK56403.1| integration host factor alpha subunit [Burkholderia mallei FMH]
 gi|147753498|gb|EDK60563.1| integration host factor alpha subunit [Burkholderia mallei JHU]
 gi|148027553|gb|EDK85574.1| integration host factor alpha subunit [Burkholderia mallei
           2002721280]
 gi|169654247|gb|EDS86940.1| integration host factor alpha subunit [Burkholderia pseudomallei
           S13]
 gi|184210538|gb|EDU07581.1| integration host factor alpha subunit [Burkholderia pseudomallei
           1655]
 gi|217393595|gb|EEC33616.1| integration host factor alpha subunit [Burkholderia pseudomallei
           576]
 gi|237505242|gb|ACQ97560.1| integration host factor, alpha subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238522284|gb|EEP85729.1| integration host factor, alpha subunit [Burkholderia mallei GB8
           horse 4]
 gi|243061335|gb|EES43521.1| integration host factor alpha subunit [Burkholderia mallei PRL-20]
          Length = 134

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 33  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 93  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 124


>gi|255066467|ref|ZP_05318322.1| integration host factor, alpha subunit [Neisseria sicca ATCC
          29256]
 gi|261365588|ref|ZP_05978471.1| integration host factor, alpha subunit [Neisseria mucosa ATCC
          25996]
 gi|261377866|ref|ZP_05982439.1| integration host factor, alpha subunit [Neisseria cinerea ATCC
          14685]
 gi|261400410|ref|ZP_05986535.1| integration host factor, alpha subunit [Neisseria lactamica ATCC
          23970]
 gi|296314669|ref|ZP_06864610.1| integration host factor, alpha subunit [Neisseria polysaccharea
          ATCC 43768]
 gi|298369375|ref|ZP_06980693.1| integration host factor, alpha subunit [Neisseria sp. oral taxon
          014 str. F0314]
 gi|313668794|ref|YP_004049078.1| integration host factor alpha-subunit [Neisseria lactamica
          ST-640]
 gi|255049347|gb|EET44811.1| integration host factor, alpha subunit [Neisseria sicca ATCC
          29256]
 gi|269145715|gb|EEZ72133.1| integration host factor, alpha subunit [Neisseria cinerea ATCC
          14685]
 gi|269209855|gb|EEZ76310.1| integration host factor, alpha subunit [Neisseria lactamica ATCC
          23970]
 gi|288565913|gb|EFC87473.1| integration host factor, alpha subunit [Neisseria mucosa ATCC
          25996]
 gi|296838496|gb|EFH22434.1| integration host factor, alpha subunit [Neisseria polysaccharea
          ATCC 43768]
 gi|298283378|gb|EFI24865.1| integration host factor, alpha subunit [Neisseria sp. oral taxon
          014 str. F0314]
 gi|309378771|emb|CBX22597.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313006256|emb|CBN87718.1| putative integration host factor alpha-subunit [Neisseria
          lactamica 020-06]
          Length = 100

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 4  TITRSDLVK-SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T+T+++L    + K   +++ D+   V   F EI  +  RGE IKIS F  F ++ K  R
Sbjct: 2  TLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLARGEEIKISGFGNFQLRDKPQR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN +T +EV I  RRVV F AS  LK
Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLK 89


>gi|126454482|ref|YP_001066011.1| integration host factor subunit alpha [Burkholderia pseudomallei
           1106a]
 gi|167845972|ref|ZP_02471480.1| integration host factor subunit alpha [Burkholderia pseudomallei
           B7210]
 gi|242316112|ref|ZP_04815128.1| integration host factor alpha subunit [Burkholderia pseudomallei
           1106b]
 gi|126228124|gb|ABN91664.1| integration host factor alpha subunit [Burkholderia pseudomallei
           1106a]
 gi|242139351|gb|EES25753.1| integration host factor alpha subunit [Burkholderia pseudomallei
           1106b]
          Length = 134

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 33  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 93  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 124


>gi|76811001|ref|YP_333297.1| integration host factor subunit alpha [Burkholderia pseudomallei
           1710b]
 gi|167738844|ref|ZP_02411618.1| integration host factor subunit alpha [Burkholderia pseudomallei
           14]
 gi|167894550|ref|ZP_02481952.1| integration host factor subunit alpha [Burkholderia pseudomallei
           7894]
 gi|167911190|ref|ZP_02498281.1| integration host factor subunit alpha [Burkholderia pseudomallei
           112]
 gi|167919213|ref|ZP_02506304.1| integration host factor subunit alpha [Burkholderia pseudomallei
           BCC215]
 gi|254261246|ref|ZP_04952300.1| integration host factor alpha subunit [Burkholderia pseudomallei
           1710a]
 gi|254297833|ref|ZP_04965286.1| integration host factor alpha subunit [Burkholderia pseudomallei
           406e]
 gi|76580454|gb|ABA49929.1| integration host factor, alpha subunit [Burkholderia pseudomallei
           1710b]
 gi|157807473|gb|EDO84643.1| integration host factor alpha subunit [Burkholderia pseudomallei
           406e]
 gi|254219935|gb|EET09319.1| integration host factor alpha subunit [Burkholderia pseudomallei
           1710a]
          Length = 134

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 33  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 93  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 124


>gi|229025157|ref|ZP_04181581.1| DNA-binding protein HU [Bacillus cereus AH1272]
 gi|228736090|gb|EEL86661.1| DNA-binding protein HU [Bacillus cereus AH1272]
          Length = 90

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 57/89 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K++++   +S+K++T  V T+   I ++   GE +++  F TF V+++ +R G
Sbjct: 1  MNKTELIKNVAQNAEISQKEATVVVQTVVESITNALAAGEKVQLIGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FKA   LK+ +
Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKEAV 89


>gi|94971131|ref|YP_593179.1| nucleoid protein Hbs [Candidatus Koribacter versatilis Ellin345]
 gi|94553181|gb|ABF43105.1| bacterial nucleoid protein Hbs [Candidatus Koribacter versatilis
          Ellin345]
          Length = 110

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 54/91 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DL+  +S+   L+RKDS   V T+F+ I  S   G+ I+I  F +F  +Q+  RVG
Sbjct: 1  MTKADLIDEVSRLAELTRKDSEVIVETIFDSIVHSLRAGDKIEIRGFGSFRTRQRKPRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T   V++  +++  FK S  LK  + D
Sbjct: 61 RNPKTGDRVEVPAKKIPFFKPSKELKDMVND 91


>gi|226199688|ref|ZP_03795241.1| integration host factor alpha subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|225928274|gb|EEH24308.1| integration host factor alpha subunit [Burkholderia pseudomallei
           Pakistan 9]
          Length = 131

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 30  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 89

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 90  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 121


>gi|325528721|gb|EGD05791.1| integration host factor subunit alpha [Burkholderia sp. TJI49]
          Length = 131

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 35  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 94

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 95  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 126


>gi|254188588|ref|ZP_04895099.1| integration host factor alpha subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157936267|gb|EDO91937.1| integration host factor alpha subunit [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 134

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 33  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 93  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 124


>gi|30019658|ref|NP_831289.1| DNA-binding protein HU [Bacillus cereus ATCC 14579]
 gi|75764066|ref|ZP_00743668.1| DNA-binding protein HU [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|29895202|gb|AAP08490.1| DNA-binding protein HU [Bacillus cereus ATCC 14579]
 gi|74488445|gb|EAO52059.1| DNA-binding protein HU [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 114

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 56/89 (62%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++DL+ ++++   LS+KD+T+ V  +F+ I ++  +G+ +++  F  F V+++ +R G
Sbjct: 25  MNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKG 84

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN QT +E++I   +V  FK    LK  +
Sbjct: 85  RNPQTGEEIEIAASKVPAFKPGKALKDAV 113


>gi|167836846|ref|ZP_02463729.1| integration host factor subunit alpha [Burkholderia thailandensis
           MSMB43]
          Length = 134

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 33  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 93  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 124


>gi|118477063|ref|YP_894214.1| DNA-binding protein HU [Bacillus thuringiensis str. Al Hakam]
 gi|118416288|gb|ABK84707.1| bacterial nucleoid protein Hbs [Bacillus thuringiensis str. Al
           Hakam]
          Length = 117

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 56/89 (62%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++DL+ ++++   LS+KD+T+ V  +F+ I ++  +G+ +++  F  F V+++ +R G
Sbjct: 28  MNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKG 87

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN QT +E++I   +V  FK    LK  +
Sbjct: 88  RNPQTGEEIEIAASKVPAFKPGKALKDAV 116


>gi|238027725|ref|YP_002911956.1| integration host factor subunit alpha [Burkholderia glumae BGR1]
 gi|237876919|gb|ACR29252.1| Integration host factor alpha subunit [Burkholderia glumae BGR1]
          Length = 133

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 32  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 91

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 92  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 123


>gi|65318875|ref|ZP_00391834.1| COG0776: Bacterial nucleoid DNA-binding protein [Bacillus anthracis
           str. A2012]
 gi|228938721|ref|ZP_04101325.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228951986|ref|ZP_04114083.1| DNA-binding protein HU [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228957885|ref|ZP_04119625.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228978213|ref|ZP_04138590.1| DNA-binding protein HU [Bacillus thuringiensis Bt407]
 gi|228984688|ref|ZP_04144861.1| DNA-binding protein HU [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|229043354|ref|ZP_04191072.1| DNA-binding protein HU [Bacillus cereus AH676]
 gi|229078792|ref|ZP_04211345.1| DNA-binding protein HU [Bacillus cereus Rock4-2]
 gi|229096101|ref|ZP_04227074.1| DNA-binding protein HU [Bacillus cereus Rock3-29]
 gi|229102213|ref|ZP_04232922.1| DNA-binding protein HU [Bacillus cereus Rock3-28]
 gi|229109065|ref|ZP_04238665.1| DNA-binding protein HU [Bacillus cereus Rock1-15]
 gi|229115057|ref|ZP_04244467.1| DNA-binding protein HU [Bacillus cereus Rock1-3]
 gi|229144208|ref|ZP_04272622.1| DNA-binding protein HU [Bacillus cereus BDRD-ST24]
 gi|229149807|ref|ZP_04278036.1| DNA-binding protein HU [Bacillus cereus m1550]
 gi|229178017|ref|ZP_04305389.1| DNA-binding protein HU [Bacillus cereus 172560W]
 gi|229183804|ref|ZP_04311021.1| DNA-binding protein HU [Bacillus cereus BGSC 6E1]
 gi|228599653|gb|EEK57256.1| DNA-binding protein HU [Bacillus cereus BGSC 6E1]
 gi|228605505|gb|EEK62954.1| DNA-binding protein HU [Bacillus cereus 172560W]
 gi|228633671|gb|EEK90271.1| DNA-binding protein HU [Bacillus cereus m1550]
 gi|228639216|gb|EEK95632.1| DNA-binding protein HU [Bacillus cereus BDRD-ST24]
 gi|228668197|gb|EEL23629.1| DNA-binding protein HU [Bacillus cereus Rock1-3]
 gi|228674343|gb|EEL29587.1| DNA-binding protein HU [Bacillus cereus Rock1-15]
 gi|228681114|gb|EEL35282.1| DNA-binding protein HU [Bacillus cereus Rock3-28]
 gi|228687061|gb|EEL40966.1| DNA-binding protein HU [Bacillus cereus Rock3-29]
 gi|228704474|gb|EEL56907.1| DNA-binding protein HU [Bacillus cereus Rock4-2]
 gi|228726002|gb|EEL77241.1| DNA-binding protein HU [Bacillus cereus AH676]
 gi|228775082|gb|EEM23475.1| DNA-binding protein HU [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228781230|gb|EEM29431.1| DNA-binding protein HU [Bacillus thuringiensis Bt407]
 gi|228801801|gb|EEM48678.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228807711|gb|EEM54233.1| DNA-binding protein HU [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228820962|gb|EEM66983.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 104

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 56/89 (62%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++DL+ ++++   LS+KD+T+ V  +F+ I ++  +G+ +++  F  F V+++ +R G
Sbjct: 15  MNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKG 74

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN QT +E++I   +V  FK    LK  +
Sbjct: 75  RNPQTGEEIEIAASKVPAFKPGKALKDAV 103


>gi|255019929|ref|ZP_05292003.1| Integration host factor alpha subunit [Acidithiobacillus caldus
          ATCC 51756]
 gi|254970588|gb|EET28076.1| Integration host factor alpha subunit [Acidithiobacillus caldus
          ATCC 51756]
          Length = 99

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++V  +    GL+++++   V + F+ I ++  RGE +K+S F  F +++K  R G
Sbjct: 3  VTKAEIVDMLYDTMGLNKREAKGIVESFFDSIRETLARGEEVKLSGFGNFTLREKNPRPG 62

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  E+ I  RRVV F  S  LK  +
Sbjct: 63 RNPKTGVEITITARRVVTFHPSQKLKAYV 91


>gi|126438744|ref|YP_001058758.1| integration host factor subunit alpha [Burkholderia pseudomallei
           668]
 gi|126218237|gb|ABN81743.1| integration host factor alpha subunit [Burkholderia pseudomallei
           668]
          Length = 134

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 33  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 93  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 124


>gi|167587357|ref|ZP_02379745.1| integration host factor subunit alpha [Burkholderia ubonensis Bu]
          Length = 133

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 32  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 91

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 92  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 123


>gi|146319301|ref|YP_001199013.1| nucleoid DNA-binding protein [Streptococcus suis 05ZYH33]
 gi|146321504|ref|YP_001201215.1| nucleoid DNA-binding protein [Streptococcus suis 98HAH33]
 gi|223932925|ref|ZP_03624920.1| histone family protein DNA-binding protein [Streptococcus suis
          89/1591]
 gi|253752334|ref|YP_003025475.1| DNA-binding protein HU [Streptococcus suis SC84]
 gi|253754160|ref|YP_003027301.1| DNA-binding protein HU [Streptococcus suis P1/7]
 gi|253756094|ref|YP_003029234.1| DNA-binding protein HU [Streptococcus suis BM407]
 gi|330833271|ref|YP_004402096.1| nucleoid DNA-binding protein [Streptococcus suis ST3]
 gi|145690107|gb|ABP90613.1| nucleoid DNA-binding protein [Streptococcus suis 05ZYH33]
 gi|145692310|gb|ABP92815.1| nucleoid DNA-binding protein [Streptococcus suis 98HAH33]
 gi|223898371|gb|EEF64737.1| histone family protein DNA-binding protein [Streptococcus suis
          89/1591]
 gi|251816623|emb|CAZ52263.1| DNA-binding protein HU [Streptococcus suis SC84]
 gi|251818558|emb|CAZ56391.1| DNA-binding protein HU [Streptococcus suis BM407]
 gi|251820406|emb|CAR47035.1| DNA-binding protein HU [Streptococcus suis P1/7]
 gi|292558933|gb|ADE31934.1| Histone-like bacterial DNA-binding protein [Streptococcus suis
          GZ1]
 gi|329307494|gb|AEB81910.1| nucleoid DNA-binding protein [Streptococcus suis ST3]
          Length = 91

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 48/87 (55%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F  + D    GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATSLTKKDSAAAVDAVFGAVADYLAAGEKVQLIGFGNFEVRERSARTGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT  E+KI   +V  FKA   LK  +
Sbjct: 64 PQTGAEIKIAASKVPAFKAGKALKDAV 90


>gi|78066092|ref|YP_368861.1| integration host factor subunit alpha [Burkholderia sp. 383]
 gi|107022554|ref|YP_620881.1| integration host factor subunit alpha [Burkholderia cenocepacia AU
           1054]
 gi|116689503|ref|YP_835126.1| integration host factor subunit alpha [Burkholderia cenocepacia
           HI2424]
 gi|170732808|ref|YP_001764755.1| integration host factor subunit alpha [Burkholderia cenocepacia
           MC0-3]
 gi|206559853|ref|YP_002230617.1| integration host factor subunit alpha [Burkholderia cenocepacia
           J2315]
 gi|254245604|ref|ZP_04938925.1| Integration host factor alpha subunit [Burkholderia cenocepacia
           PC184]
 gi|254252552|ref|ZP_04945870.1| Integration host factor alpha subunit [Burkholderia dolosa AUO158]
 gi|77966837|gb|ABB08217.1| Integration host factor, alpha subunit [Burkholderia sp. 383]
 gi|105892743|gb|ABF75908.1| integration host factor, alpha subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647592|gb|ABK08233.1| integration host factor, alpha subunit [Burkholderia cenocepacia
           HI2424]
 gi|124870380|gb|EAY62096.1| Integration host factor alpha subunit [Burkholderia cenocepacia
           PC184]
 gi|124895161|gb|EAY69041.1| Integration host factor alpha subunit [Burkholderia dolosa AUO158]
 gi|169816050|gb|ACA90633.1| integration host factor, alpha subunit [Burkholderia cenocepacia
           MC0-3]
 gi|198035894|emb|CAR51786.1| integration host factor alpha-subunit [Burkholderia cenocepacia
           J2315]
          Length = 131

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 35  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 94

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 95  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 126


>gi|313884094|ref|ZP_07817860.1| DNA-binding protein HU [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620541|gb|EFR31964.1| DNA-binding protein HU [Eremococcus coleocola ACS-139-V-Col8]
          Length = 91

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 52/84 (61%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV+ ++ +  L++KD T  V  LF  I ++   GE +++  F TF V+++ +R GRN
Sbjct: 4  KAELVEQVAAKTNLTKKDVTATVEALFETIQETLANGEKVQVIGFGTFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E++I   +V  FKA   LK
Sbjct: 64 PQTGEEIEIAATKVPGFKAGKALK 87


>gi|16079336|ref|NP_390160.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|154686527|ref|YP_001421688.1| hypothetical protein RBAM_020950 [Bacillus amyloliquefaciens
          FZB42]
 gi|221310195|ref|ZP_03592042.1| hypothetical protein Bsubs1_12521 [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221314518|ref|ZP_03596323.1| hypothetical protein BsubsN3_12437 [Bacillus subtilis subsp.
          subtilis str. NCIB 3610]
 gi|221319440|ref|ZP_03600734.1| hypothetical protein BsubsJ_12363 [Bacillus subtilis subsp.
          subtilis str. JH642]
 gi|221323716|ref|ZP_03605010.1| hypothetical protein BsubsS_12492 [Bacillus subtilis subsp.
          subtilis str. SMY]
 gi|296332983|ref|ZP_06875440.1| hypothetical protein BSU6633_17908 [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305674913|ref|YP_003866585.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus subtilis subsp.
          spizizenii str. W23]
 gi|308174071|ref|YP_003920776.1| non-specific DNA-binding protein HBsu [Bacillus amyloliquefaciens
          DSM 7]
 gi|311068794|ref|YP_003973717.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus atrophaeus
          1942]
 gi|321311749|ref|YP_004204036.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus subtilis BSn5]
 gi|118263|sp|P08821|DBH1_BACSU RecName: Full=DNA-binding protein HU 1; AltName: Full=DNA-binding
          protein II; AltName: Full=HB
 gi|39936|emb|CAA36669.1| unnamed protein product [Bacillus subtilis subsp. subtilis str.
          JH642]
 gi|39938|emb|CAA47064.1| hbsu [Bacillus subtilis]
 gi|143071|gb|AAA22535.1| hubgl [Bacillus subtilis]
 gi|143073|gb|AAA22536.1| hubsub [Bacillus subtilis]
 gi|2634697|emb|CAB14195.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|154352378|gb|ABS74457.1| HupA [Bacillus amyloliquefaciens FZB42]
 gi|291484703|dbj|BAI85778.1| non-specific DNA-binding protein HBsu [Bacillus subtilis subsp.
          natto BEST195]
 gi|296149834|gb|EFG90726.1| hypothetical protein BSU6633_17908 [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305413157|gb|ADM38276.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus subtilis subsp.
          spizizenii str. W23]
 gi|307606935|emb|CBI43306.1| non-specific DNA-binding protein HBsu [Bacillus amyloliquefaciens
          DSM 7]
 gi|310869311|gb|ADP32786.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus atrophaeus
          1942]
 gi|320018023|gb|ADV93009.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus subtilis BSn5]
 gi|328552803|gb|AEB23295.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus
          amyloliquefaciens TA208]
 gi|328912401|gb|AEB63997.1| DNA-binding protein HU 1 [Bacillus amyloliquefaciens LL3]
 gi|383705|prf||1904151A DNA-binding protein HBsu
          Length = 92

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 56/89 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   LS+KD+T+ V ++F+ I D+   G+ I++  F  F V+++ +R G
Sbjct: 1  MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FK    LK  +
Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALKDAV 89


>gi|152976119|ref|YP_001375636.1| histone family protein DNA-binding protein [Bacillus cereus
          subsp. cytotoxis NVH 391-98]
 gi|152024871|gb|ABS22641.1| histone family protein DNA-binding protein [Bacillus cytotoxicus
          NVH 391-98]
          Length = 90

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 58/89 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+KS++++  +S+K++T  V ++   I ++   GE +++  F TF V+++ +R G
Sbjct: 1  MNKTELIKSVAQKAEISQKEATVVVQSVVESITNTLAAGEKVQLIGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FKA   LK+ +
Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKEAV 89


>gi|161524946|ref|YP_001579958.1| integration host factor subunit alpha [Burkholderia multivorans
           ATCC 17616]
 gi|160342375|gb|ABX15461.1| integration host factor, alpha subunit [Burkholderia multivorans
           ATCC 17616]
          Length = 136

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 35  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 94

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 95  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 126


>gi|56695706|ref|YP_166057.1| integration host factor subunit beta [Ruegeria pomeroyi DSS-3]
 gi|81676380|sp|Q5LV98|IHFB_SILPO RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|56677443|gb|AAV94109.1| integration host factor, beta subunit [Ruegeria pomeroyi DSS-3]
          Length = 94

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ E   L ++D  R V T+F E+ D+  RG+ +++  F  F VK++ +R+
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMARGDRVELRGFGAFSVKKRDARI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V ++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGDTVHVEEKHVPFFKTGKLLRDRL 90


>gi|147676456|ref|YP_001210671.1| nucleoid DNA-binding protein [Pelotomaculum thermopropionicum SI]
 gi|146272553|dbj|BAF58302.1| bacterial nucleoid DNA-binding protein [Pelotomaculum
          thermopropionicum SI]
          Length = 91

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 58/90 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  L++KD+ + ++   + + ++  RG+ +++  F TF ++++ +R G
Sbjct: 1  MNKAELISNVAEKTELTKKDAEKAISAFLDTVGEALARGDKVQLVGFGTFEIRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   RV VFKA   L+  ++
Sbjct: 61 RNPQTGEEINIAAARVPVFKAGKALRDAVL 90


>gi|225023835|ref|ZP_03713027.1| hypothetical protein EIKCOROL_00701 [Eikenella corrodens ATCC
          23834]
 gi|224943309|gb|EEG24518.1| hypothetical protein EIKCOROL_00701 [Eikenella corrodens ATCC
          23834]
          Length = 100

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 4  TITRSDLVK-SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T+T+++L    + K   +S+ D+   V   F EI  +  RGE IKIS F  F ++ K  R
Sbjct: 2  TLTKAELADILVEKVSNISKNDAKEIVELFFEEIRATLERGEEIKISGFGNFQLRDKPQR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN +T +EV I  RRVV F AS  LK
Sbjct: 62 PGRNPKTGKEVPITARRVVTFHASQKLK 89


>gi|115351418|ref|YP_773257.1| integration host factor subunit alpha [Burkholderia ambifaria AMMD]
 gi|172060457|ref|YP_001808109.1| integration host factor subunit alpha [Burkholderia ambifaria
           MC40-6]
 gi|115281406|gb|ABI86923.1| integration host factor, alpha subunit [Burkholderia ambifaria
           AMMD]
 gi|171992974|gb|ACB63893.1| integration host factor, alpha subunit [Burkholderia ambifaria
           MC40-6]
          Length = 131

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 35  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 94

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 95  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 126


>gi|30021822|ref|NP_833453.1| DNA-binding protein HU [Bacillus cereus ATCC 14579]
 gi|30263731|ref|NP_846108.1| DNA-binding protein HU [Bacillus anthracis str. Ames]
 gi|42782806|ref|NP_980053.1| DNA-binding protein HU [Bacillus cereus ATCC 10987]
 gi|47529146|ref|YP_020495.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor']
 gi|47568219|ref|ZP_00238922.1| DNA-binding protein HU [Bacillus cereus G9241]
 gi|49186575|ref|YP_029827.1| DNA-binding protein HU [Bacillus anthracis str. Sterne]
 gi|49479195|ref|YP_037793.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian
          str. 97-27]
 gi|52141761|ref|YP_085068.1| DNA-binding protein HU [Bacillus cereus E33L]
 gi|167636022|ref|ZP_02394328.1| DNA-binding protein HU [Bacillus anthracis str. A0442]
 gi|167639780|ref|ZP_02398049.1| DNA-binding protein HU [Bacillus anthracis str. A0193]
 gi|170706770|ref|ZP_02897228.1| DNA-binding protein HU [Bacillus anthracis str. A0389]
 gi|177652045|ref|ZP_02934591.1| DNA-binding protein HU [Bacillus anthracis str. A0174]
 gi|190568477|ref|ZP_03021384.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I]
 gi|196034180|ref|ZP_03101590.1| DNA-binding protein HU [Bacillus cereus W]
 gi|196038306|ref|ZP_03105615.1| DNA-binding protein HU [Bacillus cereus NVH0597-99]
 gi|196044455|ref|ZP_03111690.1| DNA-binding protein HU [Bacillus cereus 03BB108]
 gi|206968651|ref|ZP_03229606.1| DNA-binding protein HU [Bacillus cereus AH1134]
 gi|217961152|ref|YP_002339720.1| DNA-binding protein HU [Bacillus cereus AH187]
 gi|218235888|ref|YP_002368531.1| DNA-binding protein HU [Bacillus cereus B4264]
 gi|218898826|ref|YP_002447237.1| DNA-binding protein HU [Bacillus cereus G9842]
 gi|218904856|ref|YP_002452690.1| DNA-binding protein HU [Bacillus cereus AH820]
 gi|222097183|ref|YP_002531240.1| DNA-binding protein hu [Bacillus cereus Q1]
 gi|225865703|ref|YP_002751081.1| DNA-binding protein HU [Bacillus cereus 03BB102]
 gi|227813371|ref|YP_002813380.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684]
 gi|228922442|ref|ZP_04085744.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228928776|ref|ZP_04091810.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|229157305|ref|ZP_04285383.1| DNA-binding protein HU [Bacillus cereus ATCC 4342]
 gi|229162660|ref|ZP_04290617.1| DNA-binding protein HU [Bacillus cereus R309803]
 gi|229604479|ref|YP_002867967.1| DNA-binding protein HU [Bacillus anthracis str. A0248]
 gi|254683564|ref|ZP_05147424.1| HU family DNA-binding protein [Bacillus anthracis str.
          CNEVA-9066]
 gi|254721154|ref|ZP_05182945.1| HU family DNA-binding protein [Bacillus anthracis str. A1055]
 gi|254735764|ref|ZP_05193470.1| HU family DNA-binding protein [Bacillus anthracis str. Western
          North America USA6153]
 gi|254739537|ref|ZP_05197232.1| HU family DNA-binding protein [Bacillus anthracis str. Kruger B]
 gi|254751106|ref|ZP_05203145.1| HU family DNA-binding protein [Bacillus anthracis str. Vollum]
 gi|254759423|ref|ZP_05211448.1| HU family DNA-binding protein [Bacillus anthracis str. Australia
          94]
 gi|296504231|ref|YP_003665931.1| DNA-binding protein HU [Bacillus thuringiensis BMB171]
 gi|301055218|ref|YP_003793429.1| histone family protein DNA-binding protein [Bacillus anthracis
          CI]
 gi|29897378|gb|AAP10654.1| DNA-binding protein HU [Bacillus cereus ATCC 14579]
 gi|30258375|gb|AAP27594.1| DNA-binding protein HU [Bacillus anthracis str. Ames]
 gi|42738733|gb|AAS42661.1| DNA-binding protein HU [Bacillus cereus ATCC 10987]
 gi|47504294|gb|AAT32970.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor']
 gi|47555047|gb|EAL13395.1| DNA-binding protein HU [Bacillus cereus G9241]
 gi|49180502|gb|AAT55878.1| DNA-binding protein HU [Bacillus anthracis str. Sterne]
 gi|49330751|gb|AAT61397.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian
          str. 97-27]
 gi|51975230|gb|AAU16780.1| DNA-binding protein HU [Bacillus cereus E33L]
 gi|167512181|gb|EDR87558.1| DNA-binding protein HU [Bacillus anthracis str. A0193]
 gi|167528534|gb|EDR91296.1| DNA-binding protein HU [Bacillus anthracis str. A0442]
 gi|170128188|gb|EDS97057.1| DNA-binding protein HU [Bacillus anthracis str. A0389]
 gi|172082414|gb|EDT67479.1| DNA-binding protein HU [Bacillus anthracis str. A0174]
 gi|190560481|gb|EDV14459.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I]
 gi|195993254|gb|EDX57212.1| DNA-binding protein HU [Bacillus cereus W]
 gi|196024490|gb|EDX63162.1| DNA-binding protein HU [Bacillus cereus 03BB108]
 gi|196030714|gb|EDX69312.1| DNA-binding protein HU [Bacillus cereus NVH0597-99]
 gi|206735692|gb|EDZ52850.1| DNA-binding protein HU [Bacillus cereus AH1134]
 gi|217063322|gb|ACJ77572.1| DNA-binding protein HU [Bacillus cereus AH187]
 gi|218163845|gb|ACK63837.1| DNA-binding protein HU [Bacillus cereus B4264]
 gi|218538783|gb|ACK91181.1| DNA-binding protein HU [Bacillus cereus AH820]
 gi|218545282|gb|ACK97676.1| DNA-binding protein HU [Bacillus cereus G9842]
 gi|221241241|gb|ACM13951.1| DNA-binding protein HU [Bacillus cereus Q1]
 gi|225787211|gb|ACO27428.1| DNA-binding protein HU [Bacillus cereus 03BB102]
 gi|227004634|gb|ACP14377.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684]
 gi|228620542|gb|EEK77411.1| DNA-binding protein HU [Bacillus cereus R309803]
 gi|228626032|gb|EEK82781.1| DNA-binding protein HU [Bacillus cereus ATCC 4342]
 gi|228830861|gb|EEM76464.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228837156|gb|EEM82495.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|229268887|gb|ACQ50524.1| DNA-binding protein HU [Bacillus anthracis str. A0248]
 gi|296325283|gb|ADH08211.1| DNA-binding protein HU [Bacillus thuringiensis BMB171]
 gi|300377387|gb|ADK06291.1| histone family protein DNA-binding protein [Bacillus cereus
          biovar anthracis str. CI]
 gi|324327620|gb|ADY22880.1| HU family DNA-binding protein [Bacillus thuringiensis serovar
          finitimus YBT-020]
 gi|326941437|gb|AEA17333.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 90

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 57/89 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K++++   +S+K++T  V T+   I ++   GE +++  F TF V+++ +R G
Sbjct: 1  MNKTELIKNVAQNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FKA   LK+ +
Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKEAV 89


>gi|149183707|ref|ZP_01862118.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus sp. SG-1]
 gi|148848589|gb|EDL62828.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus sp. SG-1]
          Length = 90

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   LS+KD+T+ V  +F  I D+   G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTELINAVAEAAELSKKDATKAVDAVFESIQDALANGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FK    LK  +
Sbjct: 61 RNPQTGEEIEISASKVPAFKPGKALKDAV 89


>gi|149204022|ref|ZP_01880990.1| integration host factor subunit beta [Roseovarius sp. TM1035]
 gi|149142464|gb|EDM30509.1| integration host factor subunit beta [Roseovarius sp. TM1035]
          Length = 93

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ E   L ++D  R V T+FNEI D+   G  +++  F  F VK++ +R 
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTIFNEITDALAEGNRVELRGFGAFSVKKRDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGESVHVEEKNVPFFKTGKLLRDRL 90


>gi|190575245|ref|YP_001973090.1| integration host factor subunit alpha [Stenotrophomonas
          maltophilia K279a]
 gi|194366572|ref|YP_002029182.1| integration host factor subunit alpha [Stenotrophomonas
          maltophilia R551-3]
 gi|254522974|ref|ZP_05135029.1| integration host factor, alpha subunit [Stenotrophomonas sp.
          SKA14]
 gi|226709756|sp|B4SQG8|IHFA_STRM5 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709757|sp|B2FN73|IHFA_STRMK RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|190013167|emb|CAQ46800.1| putative Integration host factor alpha-subunit [Stenotrophomonas
          maltophilia K279a]
 gi|194349376|gb|ACF52499.1| integration host factor, alpha subunit [Stenotrophomonas
          maltophilia R551-3]
 gi|219720565|gb|EED39090.1| integration host factor, alpha subunit [Stenotrophomonas sp.
          SKA14]
          Length = 99

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  E GL+++++  FV   F+ + ++  +G  +K+S F  F +++K  R 
Sbjct: 2  ALTKAEMAEKLFDEVGLNKREAKEFVDAFFDVLREALEQGRQVKLSGFGNFDLRRKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  R VV F+    LK+R+
Sbjct: 62 GRNPKTGEEIPISARTVVTFRPGQKLKERV 91


>gi|330816675|ref|YP_004360380.1| Integration host factor alpha subunit [Burkholderia gladioli BSR3]
 gi|327369068|gb|AEA60424.1| Integration host factor alpha subunit [Burkholderia gladioli BSR3]
          Length = 133

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 32  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 91

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 92  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 123


>gi|134295553|ref|YP_001119288.1| integration host factor subunit alpha [Burkholderia vietnamiensis
           G4]
 gi|134138710|gb|ABO54453.1| integration host factor, alpha subunit [Burkholderia vietnamiensis
           G4]
          Length = 128

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 32  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 91

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 92  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 123


>gi|225181422|ref|ZP_03734865.1| histone family protein DNA-binding protein [Dethiobacter
          alkaliphilus AHT 1]
 gi|225167820|gb|EEG76628.1| histone family protein DNA-binding protein [Dethiobacter
          alkaliphilus AHT 1]
          Length = 90

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 54/86 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ ++++  GL++KD+ + V  +F+ I D+  +G+ +++  F TF V+++ +R G
Sbjct: 1  MNKSELISNVAENAGLTKKDTEKVVNAIFDTIGDALAKGDKVQVIGFGTFDVRERKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN  T   + I   +V VFKA   LK
Sbjct: 61 RNPATGDTITIPAVKVPVFKAGKALK 86


>gi|30020445|ref|NP_832076.1| DNA-binding protein HU [Bacillus cereus ATCC 14579]
 gi|75762127|ref|ZP_00742029.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
 gi|206971712|ref|ZP_03232662.1| DNA-binding protein HU [Bacillus cereus AH1134]
 gi|218232049|ref|YP_002367059.1| DNA-binding protein HU [Bacillus cereus B4264]
 gi|218897327|ref|YP_002445738.1| DNA-binding protein HU [Bacillus cereus G9842]
 gi|228900972|ref|ZP_04065185.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 4222]
 gi|228908124|ref|ZP_04071972.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 200]
 gi|228921073|ref|ZP_04084408.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228939512|ref|ZP_04102100.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228952694|ref|ZP_04114768.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
 gi|228958629|ref|ZP_04120347.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228965347|ref|ZP_04126439.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar sotto
          str. T04001]
 gi|228972365|ref|ZP_04132976.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228978978|ref|ZP_04139343.1| DNA-binding protein HU 1 [Bacillus thuringiensis Bt407]
 gi|229044105|ref|ZP_04191791.1| DNA-binding protein HU 1 [Bacillus cereus AH676]
 gi|229069884|ref|ZP_04203166.1| DNA-binding protein HU 1 [Bacillus cereus F65185]
 gi|229109797|ref|ZP_04239382.1| DNA-binding protein HU 1 [Bacillus cereus Rock1-15]
 gi|229127753|ref|ZP_04256742.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-Cer4]
 gi|229144952|ref|ZP_04273348.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST24]
 gi|229150577|ref|ZP_04278792.1| DNA-binding protein HU 1 [Bacillus cereus m1550]
 gi|229178719|ref|ZP_04306083.1| DNA-binding protein HU 1 [Bacillus cereus 172560W]
 gi|229190436|ref|ZP_04317436.1| DNA-binding protein HU 1 [Bacillus cereus ATCC 10876]
 gi|296502915|ref|YP_003664615.1| DNA-binding protein HU [Bacillus thuringiensis BMB171]
 gi|29895996|gb|AAP09277.1| DNA-binding protein HU [Bacillus cereus ATCC 14579]
 gi|74490387|gb|EAO53701.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
 gi|206733697|gb|EDZ50869.1| DNA-binding protein HU [Bacillus cereus AH1134]
 gi|218160006|gb|ACK59998.1| DNA-binding protein HU [Bacillus cereus B4264]
 gi|218543334|gb|ACK95728.1| DNA-binding protein HU [Bacillus cereus G9842]
 gi|228593049|gb|EEK50868.1| DNA-binding protein HU 1 [Bacillus cereus ATCC 10876]
 gi|228604877|gb|EEK62334.1| DNA-binding protein HU 1 [Bacillus cereus 172560W]
 gi|228632886|gb|EEK89500.1| DNA-binding protein HU 1 [Bacillus cereus m1550]
 gi|228638474|gb|EEK94908.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST24]
 gi|228655830|gb|EEL11679.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-Cer4]
 gi|228673642|gb|EEL28901.1| DNA-binding protein HU 1 [Bacillus cereus Rock1-15]
 gi|228713287|gb|EEL65180.1| DNA-binding protein HU 1 [Bacillus cereus F65185]
 gi|228725218|gb|EEL76489.1| DNA-binding protein HU 1 [Bacillus cereus AH676]
 gi|228780760|gb|EEM28973.1| DNA-binding protein HU 1 [Bacillus thuringiensis Bt407]
 gi|228787382|gb|EEM35350.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228794337|gb|EEM41851.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar sotto
          str. T04001]
 gi|228801050|gb|EEM47949.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228806970|gb|EEM53515.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
 gi|228820212|gb|EEM66249.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228838619|gb|EEM83925.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228851542|gb|EEM96348.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 200]
 gi|228858670|gb|EEN03117.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 4222]
 gi|296323967|gb|ADH06895.1| DNA-binding protein HU [Bacillus thuringiensis BMB171]
 gi|326940059|gb|AEA15955.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 90

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 59/89 (66%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K++++   +S+KD++  V ++F+ I ++   G+ +++  F TF V+++ +R G
Sbjct: 1  MNKTELIKNVAQSADISQKDASAAVQSVFDTIANALQSGDKVQLIGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FKA   LK+ +
Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAV 89


>gi|207999|gb|AAA72912.1| HBsu protein [synthetic construct]
          Length = 98

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 56/89 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   LS+KD+T+ V ++F+ I D+   G+ I++  F  F V+++ +R G
Sbjct: 7  MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKG 66

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FK    LK  +
Sbjct: 67 RNPQTGEEIEIPASKVPAFKPGKALKDAV 95


>gi|163941411|ref|YP_001646295.1| histone family protein DNA-binding protein [Bacillus
          weihenstephanensis KBAB4]
 gi|229012904|ref|ZP_04170069.1| DNA-binding protein HU [Bacillus mycoides DSM 2048]
 gi|229065846|ref|ZP_04201044.1| DNA-binding protein HU [Bacillus cereus AH603]
 gi|229134528|ref|ZP_04263339.1| DNA-binding protein HU [Bacillus cereus BDRD-ST196]
 gi|163863608|gb|ABY44667.1| histone family protein DNA-binding protein [Bacillus
          weihenstephanensis KBAB4]
 gi|228648921|gb|EEL04945.1| DNA-binding protein HU [Bacillus cereus BDRD-ST196]
 gi|228715422|gb|EEL67252.1| DNA-binding protein HU [Bacillus cereus AH603]
 gi|228748158|gb|EEL98018.1| DNA-binding protein HU [Bacillus mycoides DSM 2048]
          Length = 90

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 57/89 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K++++   +S+K++T  + T+   I +S   GE +++  F TF V+++ +R G
Sbjct: 1  MNKTELIKNVAQNAEISQKEATVVLQTVVESITNSLAAGEKVQLIGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FKA   LK+ +
Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKEAV 89


>gi|170701126|ref|ZP_02892100.1| integration host factor, alpha subunit [Burkholderia ambifaria
           IOP40-10]
 gi|171318448|ref|ZP_02907603.1| integration host factor, alpha subunit [Burkholderia ambifaria
           MEX-5]
 gi|170133948|gb|EDT02302.1| integration host factor, alpha subunit [Burkholderia ambifaria
           IOP40-10]
 gi|171096362|gb|EDT41264.1| integration host factor, alpha subunit [Burkholderia ambifaria
           MEX-5]
          Length = 128

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 32  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 91

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 92  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 123


>gi|82701627|ref|YP_411193.1| integration host factor subunit alpha [Nitrosospira multiformis
           ATCC 25196]
 gi|123727231|sp|Q2YBS0|IHFA_NITMU RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|82409692|gb|ABB73801.1| integration host factor, alpha subunit [Nitrosospira multiformis
           ATCC 25196]
          Length = 101

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 56/97 (57%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L   + ++ G +++++   V + + E+  +   G+ +K+S F  F ++ K  R 
Sbjct: 2   TLTKAELADLLFEKVGFNKREAKDMVESFYEEVRIALQNGDGVKLSGFGNFQLRDKPQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T +E+ I  RRVV F AS  LK  +  +  G+
Sbjct: 62  GRNPKTGEEIPITARRVVTFHASQKLKAMVEKNQHGK 98


>gi|260428004|ref|ZP_05781983.1| integration host factor, beta subunit [Citreicella sp. SE45]
 gi|260422496|gb|EEX15747.1| integration host factor, beta subunit [Citreicella sp. SE45]
          Length = 93

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I++E   L ++D  R V T+F EI ++  RG+ +++  F  F VK++ +R+
Sbjct: 1  MIRSELIQKIAEENPHLYQRDVERIVNTIFEEITNAMARGDRVELRGFGAFSVKKRDARM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V+++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGDAVEVEEKHVPFFKTGKLLRDRL 90


>gi|15602493|ref|NP_245565.1| hypothetical protein PM0628 [Pasteurella multocida subsp.
          multocida str. Pm70]
 gi|14194851|sp|Q9CN18|IHFA_PASMU RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|12720902|gb|AAK02712.1| HimA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 98

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ +L  ++ ++  L+++D+   V   F EI  +   GE +K+S F  F ++ K SR 
Sbjct: 2  TLTKVELADNLIEKLHLNKRDAKELVENFFEEIRVALETGEDVKLSGFGNFELRDKSSRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  RRVV FK    L+ R+
Sbjct: 62 GRNPKTGESVPVSARRVVAFKPGQKLRARV 91


>gi|189350306|ref|YP_001945934.1| integration host factor subunit alpha [Burkholderia multivorans
           ATCC 17616]
 gi|189334328|dbj|BAG43398.1| integration host factor alpha subunit [Burkholderia multivorans
           ATCC 17616]
          Length = 133

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 32  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 91

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 92  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 123


>gi|319794585|ref|YP_004156225.1| histone family protein DNA-binding protein [Variovorax paradoxus
           EPS]
 gi|315597048|gb|ADU38114.1| histone family protein DNA-binding protein [Variovorax paradoxus
           EPS]
          Length = 123

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 52/92 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +  +T++ L   + ++ GL++++S   V   F  +  S + G  +KIS F  F ++ K  
Sbjct: 13  TPALTKAHLADLLFEQIGLNKRESKDMVEAFFELVASSLIEGTDVKISGFGNFQIRVKAP 72

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRV  F AS+ LK++I
Sbjct: 73  RPGRNPRTGEAIPIGERRVATFHASAKLKEQI 104


>gi|221197740|ref|ZP_03570786.1| integration host factor, alpha subunit [Burkholderia multivorans
           CGD2M]
 gi|221204702|ref|ZP_03577719.1| integration host factor, alpha subunit [Burkholderia multivorans
           CGD2]
 gi|221214897|ref|ZP_03587865.1| integration host factor, alpha subunit [Burkholderia multivorans
           CGD1]
 gi|221165124|gb|EED97602.1| integration host factor, alpha subunit [Burkholderia multivorans
           CGD1]
 gi|221175559|gb|EEE07989.1| integration host factor, alpha subunit [Burkholderia multivorans
           CGD2]
 gi|221181672|gb|EEE14073.1| integration host factor, alpha subunit [Burkholderia multivorans
           CGD2M]
          Length = 114

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 52/89 (58%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 13  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 72

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
           R GRN +T + + I  RRVV F AS  LK
Sbjct: 73  RPGRNPKTGEAIPIAARRVVTFHASQKLK 101


>gi|239814620|ref|YP_002943530.1| integration host factor, subunit beta [Variovorax paradoxus S110]
 gi|239801197|gb|ACS18264.1| integration host factor, beta subunit [Variovorax paradoxus S110]
          Length = 104

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 60/104 (57%), Gaps = 6/104 (5%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +TRSDLV+ ++  F  L+ +D+   V T+ + + D+ VRG  I+I  F +F V ++  R+
Sbjct: 1   MTRSDLVEELAARFAQLTHRDAEYAVKTILDAMSDALVRGHRIEIRGFGSFSVTRRPPRI 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD-----DMRGRKC 102
           GRN ++ + V+I  +RV  FK    L++ +       D +GRK 
Sbjct: 61  GRNPRSGESVQIPEKRVPHFKPGKALREAVDAKTAELDAKGRKA 104


>gi|217976981|ref|YP_002361128.1| histone family protein DNA-binding protein [Methylocella silvestris
           BL2]
 gi|217502357|gb|ACK49766.1| histone family protein DNA-binding protein [Methylocella silvestris
           BL2]
          Length = 118

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 3   KTITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +T TR+ L+ ++ +    LSR  +         EI ++ VRG+ +K+ SF  F V+ K  
Sbjct: 16  RTATRAALLDAVYEACPNLSRAQARDIFEMALEEIAEALVRGDCVKLRSFGLFSVRAKRE 75

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSIL 89
           R+GRN +T  E  I PRRV+ FK S +L
Sbjct: 76  RIGRNPRTGVEAPIKPRRVLTFKPSPVL 103


>gi|300703884|ref|YP_003745486.1| integration host factor (ihf) subunit alpha [Ralstonia solanacearum
           CFBP2957]
 gi|299071547|emb|CBJ42871.1| integration host factor (IHF), alpha subunit [Ralstonia
           solanacearum CFBP2957]
          Length = 140

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 56/90 (62%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L + + ++ GL++++S   V   F+ I ++  +G+++K+S F  F ++ K  R 
Sbjct: 39  TLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRP 98

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN +T + + I  RRVV F AS  LK  +
Sbjct: 99  GRNPKTGEIIPITARRVVTFHASQKLKALV 128


>gi|148826992|ref|YP_001291745.1| integration host factor subunit alpha [Haemophilus influenzae
          PittGG]
 gi|166918507|sp|A5UF06|IHFA_HAEIG RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|148718234|gb|ABQ99361.1| 50S ribosomal protein L35 [Haemophilus influenzae PittGG]
          Length = 96

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+ D+++ +S ++ LS++D+   V     EI  S   G+ +K+S F  F ++ K SR 
Sbjct: 3  TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRLSLEFGQDVKLSGFGNFELRDKSSRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  RRVV FK    L+ R+
Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARV 92


>gi|207724057|ref|YP_002254455.1| integration host factor alpha-subunit (ihf-alpha) protein
           [Ralstonia solanacearum MolK2]
 gi|206589266|emb|CAQ36228.1| integration host factor alpha-subunit (ihf-alpha) protein
           [Ralstonia solanacearum MolK2]
          Length = 140

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 56/90 (62%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L + + ++ GL++++S   V   F+ I ++  +G+++K+S F  F ++ K  R 
Sbjct: 39  TLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRP 98

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN +T + + I  RRVV F AS  LK  +
Sbjct: 99  GRNPKTGEIIPITARRVVTFHASQKLKALV 128


>gi|299066592|emb|CBJ37782.1| integration host factor (IHF), alpha subunit [Ralstonia
           solanacearum CMR15]
          Length = 139

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 56/90 (62%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L + + ++ GL++++S   V   F+ I ++  +G+++K+S F  F ++ K  R 
Sbjct: 38  TLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRP 97

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN +T + + I  RRVV F AS  LK  +
Sbjct: 98  GRNPKTGEIIPITARRVVTFHASQKLKALV 127


>gi|187929051|ref|YP_001899538.1| integration host factor subunit alpha [Ralstonia pickettii 12J]
 gi|187725941|gb|ACD27106.1| integration host factor, alpha subunit [Ralstonia pickettii 12J]
          Length = 138

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 55/87 (63%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L + + ++ GL++++S   V   F+ I ++  +G+++K+S F  F ++ K  R 
Sbjct: 37  TLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRP 96

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN +T + + I  RRVV F AS  LK
Sbjct: 97  GRNPKTGEIIPITARRVVTFHASQKLK 123


>gi|295398952|ref|ZP_06808934.1| histone family protein DNA-binding protein [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|312110441|ref|YP_003988757.1| histone family protein DNA-binding protein [Geobacillus sp.
          Y4.1MC1]
 gi|294978418|gb|EFG54014.1| histone family protein DNA-binding protein [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|311215542|gb|ADP74146.1| histone family protein DNA-binding protein [Geobacillus sp.
          Y4.1MC1]
 gi|227370|prf||1702428A DNA binding protein HU
          Length = 90

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 55/86 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++  GLS+KD+T+ V  +F  I ++  +G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTELINTVAEISGLSKKDATKAVDAVFESITEALKKGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I   +V  FK    LK
Sbjct: 61 RNPQTGEEMEIPASKVPAFKPGKALK 86


>gi|207742952|ref|YP_002259344.1| integration host factor alpha-subunit (ihf-alpha) protein
           [Ralstonia solanacearum IPO1609]
 gi|206594347|emb|CAQ61274.1| probable integration host factor alpha-subunit (ihf-alpha) protein
           [Ralstonia solanacearum IPO1609]
          Length = 140

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 56/90 (62%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L + + ++ GL++++S   V   F+ I ++  +G+++K+S F  F ++ K  R 
Sbjct: 39  TLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRP 98

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN +T + + I  RRVV F AS  LK  +
Sbjct: 99  GRNPKTGEIIPITARRVVTFHASQKLKALV 128


>gi|238022788|ref|ZP_04603214.1| hypothetical protein GCWU000324_02699 [Kingella oralis ATCC 51147]
 gi|237865991|gb|EEP67127.1| hypothetical protein GCWU000324_02699 [Kingella oralis ATCC 51147]
          Length = 120

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 4   TITRSDLVK-SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           T+T+++L    + K   +S+ D+   V   F EI  +  RGE IKIS F  F ++ K  R
Sbjct: 24  TLTKAELADILVEKVSSISKHDAKEIVELFFEEIRTTLERGEEIKISGFGNFQLRDKPQR 83

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILK 90
            GRN +T +EV I  RRVV F AS  LK
Sbjct: 84  PGRNPKTGEEVAITARRVVTFHASQKLK 111


>gi|285017870|ref|YP_003375581.1| integration host factor alpha-subunit (ihf-alpha) protein
          [Xanthomonas albilineans GPE PC73]
 gi|283473088|emb|CBA15593.1| putative integration host factor alpha-subunit (ihf-alpha)
          protein [Xanthomonas albilineans]
          Length = 99

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  E GL+++++  FV   F+ + ++  +G  +K+S F  F +++K  R 
Sbjct: 2  ALTKAEMAERLFDEVGLNKREAKEFVDAFFDVLREALEQGRQVKLSGFGNFDLRRKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  R VV F+    LK+R+
Sbjct: 62 GRNPKTGEEIPISARTVVTFRPGQKLKERV 91


>gi|145636219|ref|ZP_01791889.1| predicted transporter [Haemophilus influenzae PittHH]
 gi|145270741|gb|EDK10674.1| predicted transporter [Haemophilus influenzae PittHH]
          Length = 96

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 50/90 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+ D+++ +S ++ LS+ D+   V     EI  S   G  +K+S F  F ++ K SR 
Sbjct: 3  TITKIDIIEYLSDKYQLSKYDTKNVVENFLEEIRSSLESGHDVKLSGFGNFELRDKSSRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  RRVV FK    L+ R+
Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARV 92


>gi|212638931|ref|YP_002315451.1| DNA-binding protein HU-alpha (histone-like protein) [Anoxybacillus
           flavithermus WK1]
 gi|212560411|gb|ACJ33466.1| DNA-binding protein HU-alpha (histone-like protein) [Anoxybacillus
           flavithermus WK1]
          Length = 101

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 56/89 (62%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L+ ++++  GLS+KD+++ V  +F+ I ++   G+ +++  F  F V+++ +R G
Sbjct: 12  MNKTELINAVAEASGLSKKDASKAVDAVFDAITEALKNGDKVQLIGFGNFEVRERAARKG 71

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN QT +E++I   +V  FK    LK  +
Sbjct: 72  RNPQTGEEIEIAASKVPAFKPGKALKDAV 100


>gi|229096853|ref|ZP_04227822.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-29]
 gi|229102961|ref|ZP_04233650.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-28]
 gi|229115841|ref|ZP_04245239.1| DNA-binding protein HU 1 [Bacillus cereus Rock1-3]
 gi|229161324|ref|ZP_04289309.1| DNA-binding protein HU 1 [Bacillus cereus R309803]
 gi|228622138|gb|EEK78979.1| DNA-binding protein HU 1 [Bacillus cereus R309803]
 gi|228667584|gb|EEL23028.1| DNA-binding protein HU 1 [Bacillus cereus Rock1-3]
 gi|228680376|gb|EEL34564.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-28]
 gi|228686463|gb|EEL40372.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-29]
          Length = 90

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 59/89 (66%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K++++   +S+KD++  V ++F+ I ++   G+ +++  F TF V+++ +R G
Sbjct: 1  MNKTELIKNVAQTADISQKDASAAVQSVFDTIANALQSGDKVQLIGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FKA   LK+ +
Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAV 89


>gi|254460326|ref|ZP_05073742.1| integration host factor, beta subunit [Rhodobacterales bacterium
          HTCC2083]
 gi|206676915|gb|EDZ41402.1| integration host factor, beta subunit [Rhodobacteraceae bacterium
          HTCC2083]
          Length = 93

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ ++ E   L ++D  R V T+F EI ++  RG+ +++  F  F VK++ +RV
Sbjct: 1  MIRSELIQKLADENPHLYQRDVERIVNTVFEEITETMARGDRVELRGFGAFSVKKRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGESVPVEEKHVPFFKTGKLLRDRL 90


>gi|90961862|ref|YP_535778.1| DNA-binding protein HU [Lactobacillus salivarius UCC118]
 gi|301299465|ref|ZP_07205740.1| DNA-binding protein HU [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|90821056|gb|ABD99695.1| DNA-binding protein HU [Lactobacillus salivarius UCC118]
 gi|300852928|gb|EFK80537.1| DNA-binding protein HU [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 91

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 53/84 (63%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          ++ L++ ++++ GL++KD+T  V  +F  I D+ V GE +++  F  F V+++ +R GRN
Sbjct: 4  KAALIERVAEKTGLTKKDATVAVDAVFETIQDALVDGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E++I   +V  FK    LK
Sbjct: 64 PQTGEEIEIPASKVPAFKPGKSLK 87


>gi|83748303|ref|ZP_00945328.1| Integration host factor alpha-subunit [Ralstonia solanacearum
           UW551]
 gi|83725035|gb|EAP72188.1| Integration host factor alpha-subunit [Ralstonia solanacearum
           UW551]
          Length = 175

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 56/91 (61%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            T+T+++L + + ++ GL++++S   V   F+ I ++  +G+++K+S F  F ++ K  R
Sbjct: 73  PTLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 132

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            GRN +T + + I  RRVV F AS  LK  +
Sbjct: 133 PGRNPKTGEIIPITARRVVTFHASQKLKALV 163


>gi|126731019|ref|ZP_01746827.1| integration host factor beta subunit [Sagittula stellata E-37]
 gi|126708321|gb|EBA07379.1| integration host factor beta subunit [Sagittula stellata E-37]
          Length = 93

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ E   L ++D  R V T+F EI ++  RG+ +++  F  F VK++ +R+
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTIFEEITNAMARGDRVELRGFGAFSVKKRDARI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V+++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGDSVEVEEKHVPFFKTGKLLRDRL 90


>gi|152975541|ref|YP_001375058.1| histone family protein DNA-binding protein [Bacillus cereus
          subsp. cytotoxis NVH 391-98]
 gi|152024293|gb|ABS22063.1| histone family protein DNA-binding protein [Bacillus cytotoxicus
          NVH 391-98]
          Length = 90

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 59/89 (66%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K++++   +S+KD++  V ++F+ I ++   G+ +++  F TF V+++ +R G
Sbjct: 1  MNKTELIKNVAQSADISQKDASVAVQSVFDTITNALQNGDKVQLIGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FKA   LK+ +
Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAV 89


>gi|309782533|ref|ZP_07677256.1| integration host factor, alpha subunit [Ralstonia sp. 5_7_47FAA]
 gi|308918624|gb|EFP64298.1| integration host factor, alpha subunit [Ralstonia sp. 5_7_47FAA]
          Length = 138

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 55/87 (63%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L + + ++ GL++++S   V   F+ I ++  +G+++K+S F  F ++ K  R 
Sbjct: 37  TLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRP 96

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN +T + + I  RRVV F AS  LK
Sbjct: 97  GRNPKTGEIIPITARRVVTFHASQKLK 123


>gi|73540975|ref|YP_295495.1| integration host factor subunit alpha [Ralstonia eutropha JMP134]
 gi|72118388|gb|AAZ60651.1| Integration host factor, alpha subunit [Ralstonia eutropha JMP134]
          Length = 138

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 54/87 (62%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L + +  + GL++++S   V   F+ I ++  +G+++K+S F  F ++ K  R 
Sbjct: 39  TLTKAELAEMLFDQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRP 98

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN +T + + I  RRVV F AS  LK
Sbjct: 99  GRNPKTGEVIPITARRVVTFHASQKLK 125


>gi|261367126|ref|ZP_05980009.1| DNA-binding protein HU [Subdoligranulum variabile DSM 15176]
 gi|282571249|gb|EFB76784.1| DNA-binding protein HU [Subdoligranulum variabile DSM 15176]
          Length = 90

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 52/86 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +L+ +++ E  L++KD+ + V T  N I ++   G+ + +  F TF V+++ +R G
Sbjct: 1  MTKVELIAAVANEANLTKKDAEQAVNTALNAITEALKNGDKVTLVGFGTFEVRERPARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT  E+ I+  ++  FKA   LK
Sbjct: 61 RNPQTGAEITIEASKLPAFKAGKALK 86


>gi|227890888|ref|ZP_04008693.1| non-specific DNA-binding protein HBsu [Lactobacillus salivarius
          ATCC 11741]
 gi|227867297|gb|EEJ74718.1| non-specific DNA-binding protein HBsu [Lactobacillus salivarius
          ATCC 11741]
          Length = 100

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 54/87 (62%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          ++ L++ ++++ GL++KD+T  V  +F  I D+ V GE +++  F  F V+++ +R GRN
Sbjct: 13 KAALIERVAEKTGLTKKDATVAVDAVFETIQDALVDGEKVQLIGFGNFEVRERAARKGRN 72

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT +E++I   +V  FK    LK  +
Sbjct: 73 PQTGEEIEIPASKVPAFKPGKSLKDAV 99


>gi|119476516|ref|ZP_01616867.1| integration host factor alpha subunit [marine gamma
          proteobacterium HTCC2143]
 gi|119450380|gb|EAW31615.1| integration host factor alpha subunit [marine gamma
          proteobacterium HTCC2143]
          Length = 102

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 51/90 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S + + + +E GL+++++   V   F EI  S    E +K+S F  F ++ K  R 
Sbjct: 3  ALTKSVMAEKLYEELGLNKREAKEVVEHFFEEIRYSLEDNEQVKLSGFGNFDLRDKSQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK R+
Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKVRV 92


>gi|17546302|ref|NP_519704.1| integration host factor subunit alpha [Ralstonia solanacearum
          GMI1000]
 gi|21362602|sp|Q8XZ23|IHFA_RALSO RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|17428599|emb|CAD15285.1| probable integration host factor alpha-subunit (ihf-alpha)
          protein [Ralstonia solanacearum GMI1000]
          Length = 104

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 55/87 (63%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+++L + + ++ GL++++S   V   F+ I ++  +G+++K+S F  F ++ K  R 
Sbjct: 3  TLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T + + I  RRVV F AS  LK
Sbjct: 63 GRNPKTGEIIPITARRVVTFHASQKLK 89


>gi|294670490|ref|ZP_06735370.1| hypothetical protein NEIELOOT_02208 [Neisseria elongata subsp.
          glycolytica ATCC 29315]
 gi|291307769|gb|EFE49012.1| hypothetical protein NEIELOOT_02208 [Neisseria elongata subsp.
          glycolytica ATCC 29315]
          Length = 102

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 4  TITRSDLVK-SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T+T+++L    + K   +++ D+   V   F EI  +  RGE IKIS F  F ++ K  R
Sbjct: 2  TLTKAELADILVEKVSSVTKNDAKEIVELFFEEIRTTLERGEEIKISGFGNFQLRDKPQR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN +T +EV I  RRVV F AS  LK
Sbjct: 62 PGRNPKTGEEVPISARRVVTFHASQKLK 89


>gi|261406040|ref|YP_003242281.1| histone family protein DNA-binding protein [Paenibacillus sp.
          Y412MC10]
 gi|315646418|ref|ZP_07899536.1| histone family protein DNA-binding protein [Paenibacillus vortex
          V453]
 gi|329929885|ref|ZP_08283561.1| DNA-binding protein HU-beta [Paenibacillus sp. HGF5]
 gi|261282503|gb|ACX64474.1| histone family protein DNA-binding protein [Paenibacillus sp.
          Y412MC10]
 gi|315278061|gb|EFU41381.1| histone family protein DNA-binding protein [Paenibacillus vortex
          V453]
 gi|328935863|gb|EGG32324.1| DNA-binding protein HU-beta [Paenibacillus sp. HGF5]
          Length = 90

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+  +++   LS+KD+T+ V  +F+ I ++   G+ +++  F  F V+++ +R G
Sbjct: 1  MNKSDLITQVAESTELSKKDATKAVDAVFDAISEALQSGDKVQLVGFGNFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   ++  FK    LK  I
Sbjct: 61 RNPQTGEEIEIPASKIPAFKPGKALKDGI 89


>gi|116333426|ref|YP_794953.1| nucleoid DNA-binding protein [Lactobacillus brevis ATCC 367]
 gi|116098773|gb|ABJ63922.1| bacterial nucleoid protein Hbs [Lactobacillus brevis ATCC 367]
          Length = 91

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 51/87 (58%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          ++ LV  ++   GL++KD+T  V  +F+ +  +  +GE +++  F  F V+++ +R GRN
Sbjct: 4  KAQLVSDVATATGLTKKDATAAVDAVFDSVQATLAKGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT QE++I   +V  FK    LK  +
Sbjct: 64 PQTGQEIQIPASKVPAFKPGKALKDAV 90


>gi|241663237|ref|YP_002981597.1| integration host factor subunit alpha [Ralstonia pickettii 12D]
 gi|240865264|gb|ACS62925.1| integration host factor, alpha subunit [Ralstonia pickettii 12D]
          Length = 138

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 55/87 (63%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L + + ++ GL++++S   V   F+ I ++  +G+++K+S F  F ++ K  R 
Sbjct: 37  TLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRP 96

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN +T + + I  RRVV F AS  LK
Sbjct: 97  GRNPKTGEIIPITARRVVTFHASQKLK 123


>gi|319792456|ref|YP_004154096.1| integration host factor, beta subunit [Variovorax paradoxus EPS]
 gi|315594919|gb|ADU35985.1| integration host factor, beta subunit [Variovorax paradoxus EPS]
          Length = 107

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDLV+ ++  F  L+ +D+   V T+ + + D+ VRG  I+I  F +F V ++  R+
Sbjct: 1  MTRSDLVEELAARFAQLTHRDAEYAVKTILDAMSDALVRGHRIEIRGFGSFSVNRRPPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V+I  +RV  FK    L++ +
Sbjct: 61 GRNPRSGESVQIPEKRVPHFKPGKALREAV 90


>gi|32472422|ref|NP_865416.1| DNA-binding protein HU [Rhodopirellula baltica SH 1]
 gi|32443658|emb|CAD73100.1| probable DNA-binding protein HU [Rhodopirellula baltica SH 1]
 gi|327538485|gb|EGF25149.1| DNA-binding protein HU [Rhodopirellula baltica WH47]
          Length = 139

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 56/89 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ ++V+ IS+E GL+++++   V   F+ I ++ VR   I++ +F  F VK + +R  
Sbjct: 1  MTKKEIVRVISEELGLTQQETKEVVQRTFDSIVETLVREGRIELRNFGVFEVKPRAARKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T Q+V +  + VV FK   ++++R+
Sbjct: 61 RNPKTGQQVDVPEKYVVTFKPGKVMEQRV 89


>gi|294497364|ref|YP_003561064.1| DNA-binding protein HU [Bacillus megaterium QM B1551]
 gi|295702737|ref|YP_003595812.1| DNA-binding protein HU [Bacillus megaterium DSM 319]
 gi|294347301|gb|ADE67630.1| DNA-binding protein HU [Bacillus megaterium QM B1551]
 gi|294800396|gb|ADF37462.1| DNA-binding protein HU [Bacillus megaterium DSM 319]
          Length = 90

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV +++ +  L++ D+++ V  L   I  +   GE I++  F TF V+++ +R G
Sbjct: 1  MNKTDLVNAVATKSELTKADASKAVDALLETISSTLGEGEKIQLIGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FKA   LK+ +
Sbjct: 61 RNPQTGEEMQIPASKVPAFKAGKELKEAV 89


>gi|194289389|ref|YP_002005296.1| integration host factor subunit alpha [Cupriavidus taiwanensis LMG
           19424]
 gi|193223224|emb|CAQ69229.1| integration host factor (IHF), alpha subunit [Cupriavidus
           taiwanensis LMG 19424]
          Length = 136

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 54/87 (62%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L + +  + GL++++S   V   F+ I ++  +G+++K+S F  F ++ K  R 
Sbjct: 39  TLTKAELAEMLFDQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRP 98

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN +T + + I  RRVV F AS  LK
Sbjct: 99  GRNPKTGEVIPITARRVVTFHASQKLK 125


>gi|326692493|ref|ZP_08229498.1| nucleoid DNA-binding protein [Leuconostoc argentinum KCTC 3773]
          Length = 91

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 51/87 (58%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +LV S++K  GL++KD+T  V  +F  I ++   GE +++  F  F V+ + +R GRN
Sbjct: 4  KQELVDSVAKATGLTKKDATAAVDAVFTSIEEALKNGEKVQLIGFGNFEVRDRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT  E++I   +V  FK    LK+ +
Sbjct: 64 PQTGAEIEIPASKVPAFKPGKALKEAV 90


>gi|114562885|ref|YP_750398.1| integration host factor, alpha subunit [Shewanella frigidimarina
           NCIMB 400]
 gi|122299977|sp|Q083K5|IHFA_SHEFN RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|114334178|gb|ABI71560.1| integration host factor, alpha subunit [Shewanella frigidimarina
           NCIMB 400]
          Length = 99

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 56/98 (57%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ + + +  G++++ +   V + F EI ++   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAEMAEHLFETLGINKRVAKEMVESFFEEIREALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +++ I  RRVV F+    LK R+     G+K
Sbjct: 62  GRNPKTGEDIPISARRVVTFRPGQKLKSRVEAANSGKK 99


>gi|260887856|ref|ZP_05899119.1| DNA-binding protein HU [Selenomonas sputigena ATCC 35185]
 gi|330838724|ref|YP_004413304.1| histone family protein DNA-binding protein [Selenomonas sputigena
          ATCC 35185]
 gi|260862362|gb|EEX76862.1| DNA-binding protein HU [Selenomonas sputigena ATCC 35185]
 gi|329746488|gb|AEB99844.1| histone family protein DNA-binding protein [Selenomonas sputigena
          ATCC 35185]
          Length = 92

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 54/86 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ GLS+K + + +  +   I ++ V G+ +++  F TF VK + +R G
Sbjct: 1  MNKTELVANVAEKAGLSKKVAEQALGAIIESIEEALVEGDKVQLIGFGTFEVKDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+KI   R  VFKA   LK
Sbjct: 61 RNPQTGKEIKIAASRNPVFKAGKALK 86


>gi|198284326|ref|YP_002220647.1| integration host factor subunit alpha [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218668129|ref|YP_002426987.1| integration host factor, alpha subunit [Acidithiobacillus
          ferrooxidans ATCC 23270]
 gi|198248847|gb|ACH84440.1| integration host factor, alpha subunit [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218520342|gb|ACK80928.1| integration host factor, alpha subunit [Acidithiobacillus
          ferrooxidans ATCC 23270]
          Length = 99

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++V  + +  GL+++++   V  LF+ I ++  +GE +K+S F  F ++ K  R 
Sbjct: 2  AVTKAEIVDMLFESMGLNKREAKGIVEALFDGIRENLAKGEEVKLSGFGNFTLRDKNPRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  E+ I  RRVV F  S  LK  +
Sbjct: 62 GRNPKTGVEITITARRVVTFHPSQKLKAYV 91


>gi|220930448|ref|YP_002507357.1| histone family protein DNA-binding protein [Clostridium
          cellulolyticum H10]
 gi|220000776|gb|ACL77377.1| histone family protein DNA-binding protein [Clostridium
          cellulolyticum H10]
          Length = 91

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 55/89 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  ++++ GL++KDS + +  +   + ++   G+ +++  F +F VKQ+ +R G
Sbjct: 1  MNKSELIDKMAEKSGLTKKDSDKALNAMLESVEEALTGGDKVQLIGFGSFEVKQRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +  VFKA   LK+ I
Sbjct: 61 RNPQTMEEINIPESKAPVFKAGKDLKEMI 89


>gi|88607772|ref|YP_505798.1| integration host factor, alpha subunit [Anaplasma phagocytophilum
           HZ]
 gi|88598835|gb|ABD44305.1| integration host factor, alpha subunit [Anaplasma phagocytophilum
           HZ]
          Length = 106

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 57/96 (59%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           M +T+T++ +   I++E GLSR+DS   V  + +E+  S VR  ++KISSF  F V +K 
Sbjct: 9   MVQTLTKARIASMINREIGLSREDSLAIVGEILDEMSSSLVRCGSLKISSFGIFKVIRKK 68

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
            RVGRN +T ++  ++    V F  S  +K+ I  D
Sbjct: 69  ERVGRNPKTLEKFVVEEHNTVTFCPSVTVKRFINGD 104


>gi|228997443|ref|ZP_04157062.1| DNA-binding protein HU [Bacillus mycoides Rock3-17]
 gi|229005088|ref|ZP_04162812.1| DNA-binding protein HU [Bacillus mycoides Rock1-4]
 gi|228756190|gb|EEM05511.1| DNA-binding protein HU [Bacillus mycoides Rock1-4]
 gi|228762319|gb|EEM11246.1| DNA-binding protein HU [Bacillus mycoides Rock3-17]
          Length = 93

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 60/91 (65%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K + +++L+K++++   +S+K+++  V ++F+ I ++   G+ +++  F TF V+++ +R
Sbjct: 2  KKMNKTELIKNVAQTADISQKEASAAVQSVFDTIANALQTGDKVQLIGFGTFEVRERAAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN QT +E++I   +V  FKA   LK+ +
Sbjct: 62 TGRNPQTGEEIQIAAGKVPAFKAGKELKEAV 92


>gi|163747513|ref|ZP_02154863.1| integration host factor subunit beta [Oceanibulbus indolifex
          HEL-45]
 gi|161379191|gb|EDQ03610.1| integration host factor subunit beta [Oceanibulbus indolifex
          HEL-45]
          Length = 94

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L ++D  R V T+F+EI  +  RG+ +++  F  F VK++ +RV
Sbjct: 1  MIRSELIQKIADDNPHLYQRDVERIVNTVFDEITGAMSRGDRVELRGFGAFSVKKRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +D + V  FK   +L+ R+
Sbjct: 61 GRNPRTGETVNVDEKHVPFFKTGKLLRDRL 90


>gi|113867363|ref|YP_725852.1| integration host factor subunit alpha [Ralstonia eutropha H16]
 gi|113526139|emb|CAJ92484.1| integration host factor alpha subunit [Ralstonia eutropha H16]
          Length = 128

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 54/87 (62%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L + +  + GL++++S   V   F+ I ++  +G+++K+S F  F ++ K  R 
Sbjct: 31  TLTKAELAEMLFDQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRP 90

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN +T + + I  RRVV F AS  LK
Sbjct: 91  GRNPKTGEVIPITARRVVTFHASQKLK 117


>gi|332967814|gb|EGK06913.1| integration host factor subunit alpha [Kingella kingae ATCC
          23330]
          Length = 102

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 4  TITRSDLVK-SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T+T+++L    + K   L + D+   V   F EI  +  +GE IKIS F  F ++ K  R
Sbjct: 2  TLTKAELADILVDKVSNLGKNDAKEIVELFFEEIRTTLAQGEEIKISGFGNFQLRDKPQR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN +T +EV I  RRVV F AS  LK
Sbjct: 62 PGRNPKTGEEVAITARRVVTFHASQKLK 89


>gi|319651353|ref|ZP_08005482.1| DNA-binding protein HU 1 [Bacillus sp. 2_A_57_CT2]
 gi|317396884|gb|EFV77593.1| DNA-binding protein HU 1 [Bacillus sp. 2_A_57_CT2]
          Length = 90

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 55/89 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   LS+KD+T+ V  +F+ I D+   G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTELINAVAEAGELSKKDATKAVDAVFDTILDALKNGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FK    LK  +
Sbjct: 61 RNPQTGEEIEIAASKVPAFKPGKALKDAV 89


>gi|254512178|ref|ZP_05124245.1| integration host factor, beta subunit [Rhodobacteraceae bacterium
          KLH11]
 gi|221535889|gb|EEE38877.1| integration host factor, beta subunit [Rhodobacteraceae bacterium
          KLH11]
          Length = 94

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ E   L ++D  R V T+F E+ D+  RG+ +++  F  F VK++ +RV
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMSRGDRVELRGFGAFSVKKRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V+++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGETVQVEEKCVPFFKTGKLLRDRL 90


>gi|126640672|ref|YP_001083656.1| integration host factor subunit alpha [Acinetobacter baumannii
          ATCC 17978]
          Length = 90

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 48/77 (62%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
          L+R+++ + V   F+EI  + + GE +K+S F  F ++ K  R GRN +T +E+ I  RR
Sbjct: 11 LNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRERPGRNPKTGEEIPISARR 70

Query: 80 VVVFKASSILKKRIMDD 96
          VV F+A    ++R+ ++
Sbjct: 71 VVTFRAGQKFRQRVGNE 87


>gi|58584918|ref|YP_198491.1| nucleoid DNA-binding protein [Wolbachia endosymbiont strain TRS
          of Brugia malayi]
 gi|58419234|gb|AAW71249.1| Bacterial nucleoid DNA-binding protein, HupA family [Wolbachia
          endosymbiont strain TRS of Brugia malayi]
          Length = 102

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 56/90 (62%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++ + + I++E GLS++DS   +  + +EI  S V+   +KISSF TF +K+K  R 
Sbjct: 10 TVTKATIAEDINQEIGLSKEDSAAIIDDILDEIKASLVKDGIVKISSFGTFLIKKKKERP 69

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          G    T+++V I  R  V F+ S ++KK I
Sbjct: 70 GNVPNTSKKVVIQARNSVSFRPSKVIKKLI 99


>gi|229085283|ref|ZP_04217525.1| DNA-binding protein HU [Bacillus cereus Rock3-44]
 gi|228698002|gb|EEL50745.1| DNA-binding protein HU [Bacillus cereus Rock3-44]
          Length = 90

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 59/89 (66%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K++++   +S+KD++  V ++F+ I ++   G+ +++  F TF V+++ +R G
Sbjct: 1  MNKTELIKNVAQTADISQKDASVAVQSVFDAITNALQTGDKVQLIGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FKA   LK+ +
Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAV 89


>gi|228918447|ref|ZP_04081894.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis
          BGSC 4CC1]
 gi|228841197|gb|EEM86392.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis
          BGSC 4CC1]
          Length = 93

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K I+++  L++KD+      L + I ++   GE ++I  F TF V++K +R G
Sbjct: 4  MNKTELTKVIAEKAELTQKDAAAATQALLDTITNALANGEKVQILGFGTFEVREKSARTG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +   FKA   LK+ +
Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKELKEAV 92


>gi|163752059|ref|ZP_02159267.1| integration host factor, alpha subunit [Shewanella benthica KT99]
 gi|161328059|gb|EDP99229.1| integration host factor, alpha subunit [Shewanella benthica KT99]
          Length = 98

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 53/92 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +  G++++ +   V T F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRQALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKSRVEE 93


>gi|229543995|ref|ZP_04433054.1| histone family protein DNA-binding protein [Bacillus coagulans
          36D1]
 gi|229325134|gb|EEN90810.1| histone family protein DNA-binding protein [Bacillus coagulans
          36D1]
          Length = 90

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ ++++   LS+KD+T+ V  +F+ I ++   G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAEATELSKKDTTKAVDAIFDTIQNALANGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  FK    LK  +
Sbjct: 61 RNPQTGEEIDIAASKVPAFKPGKALKDAV 89


>gi|251794085|ref|YP_003008816.1| histone family protein DNA-binding protein [Paenibacillus sp.
          JDR-2]
 gi|247541711|gb|ACS98729.1| histone family protein DNA-binding protein [Paenibacillus sp.
          JDR-2]
          Length = 90

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+ + GL+++D    +     E+ D+   G+ +++  F TF  +++  RVG
Sbjct: 1  MNKTDLINNIATKSGLTKRDVEAVLNGFLGEVTDALAGGDKVQLIGFGTFETRKRSGRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  FKA + LK  I
Sbjct: 61 RNPQTGKEISIPESKVPAFKAGNKLKDAI 89


>gi|126667906|ref|ZP_01738871.1| integration host factor subunit alpha [Marinobacter sp. ELB17]
 gi|126627566|gb|EAZ98198.1| integration host factor subunit alpha [Marinobacter sp. ELB17]
          Length = 100

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  E GL+++++   V   F+E+  +    E +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEMAERLYDELGLNKREAKEMVEAFFDEVRGALGHNEQVKLSGFGNFDLRDKKERP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+    LK ++
Sbjct: 63 GRNPKTGEEIPICARRVVTFRPGQKLKAKV 92


>gi|193213379|ref|YP_001999332.1| histone family protein DNA-binding protein [Chlorobaculum parvum
          NCIB 8327]
 gi|193086856|gb|ACF12132.1| histone family protein DNA-binding protein [Chlorobaculum parvum
          NCIB 8327]
          Length = 100

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 56/99 (56%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M +T T++DLV  I++  GL++ ++   V  LF  I DS   G+ I+I  F +F+++ K 
Sbjct: 1  MGQTTTKADLVNVIAQRTGLTKHETESVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           R  RN +T ++V + P+ V  FK S   K  + + ++ 
Sbjct: 61 LRQARNPRTGEKVTVGPKNVPTFKISKEFKHAVSESLKA 99


>gi|149916117|ref|ZP_01904639.1| integration host factor, beta subunit [Roseobacter sp. AzwK-3b]
 gi|149809972|gb|EDM69821.1| integration host factor, beta subunit [Roseobacter sp. AzwK-3b]
          Length = 94

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I++E   L ++D  R V T+FNEI ++   G  +++  F  F VK++ +R 
Sbjct: 1  MIRSELIQKIAEENPHLYQRDVERIVNTIFNEITNAMAEGNRVELRGFGAFSVKRRDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGEAVYVEEKHVPFFKTGKLLRDRL 90


>gi|157375731|ref|YP_001474331.1| integration host factor, alpha subunit [Shewanella sediminis
          HAW-EB3]
 gi|157962289|ref|YP_001502323.1| integration host factor subunit alpha [Shewanella pealeana ATCC
          700345]
 gi|167623744|ref|YP_001674038.1| integration host factor subunit alpha [Shewanella halifaxensis
          HAW-EB4]
 gi|212635793|ref|YP_002312318.1| integration host factor subunit alpha [Shewanella piezotolerans
          WP3]
 gi|189045030|sp|B0TQY4|IHFA_SHEHH RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|189045031|sp|A8H5F1|IHFA_SHEPA RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|189045032|sp|A8FWI0|IHFA_SHESH RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709753|sp|B8CR59|IHFA_SHEPW RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|157318105|gb|ABV37203.1| integration host factor, alpha subunit [Shewanella sediminis
          HAW-EB3]
 gi|157847289|gb|ABV87788.1| integration host factor, alpha subunit [Shewanella pealeana ATCC
          700345]
 gi|167353766|gb|ABZ76379.1| integration host factor, alpha subunit [Shewanella halifaxensis
          HAW-EB4]
 gi|212557277|gb|ACJ29731.1| Integration host factor, alpha subunit [Shewanella piezotolerans
          WP3]
          Length = 98

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 53/92 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +  G++++ +   V T F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRQALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKSRVEE 93


>gi|157692778|ref|YP_001487240.1| non-specific DNA-binding protein HBsu [Bacillus pumilus SAFR-032]
 gi|194016903|ref|ZP_03055516.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Bacillus
          pumilus ATCC 7061]
 gi|157681536|gb|ABV62680.1| non-specific DNA-binding protein HBsu [Bacillus pumilus SAFR-032]
 gi|194011509|gb|EDW21078.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Bacillus
          pumilus ATCC 7061]
          Length = 92

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 55/89 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   LS+KD+T+ V ++F+ I D+   G+ I++  F  F V+++ +R G
Sbjct: 1  MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I   +V  FK    LK  +
Sbjct: 61 RNPQTGAEIEIPASKVPAFKPGKALKDAV 89


>gi|126727662|ref|ZP_01743494.1| integration host factor beta subunit [Rhodobacterales bacterium
          HTCC2150]
 gi|126703078|gb|EBA02179.1| integration host factor beta subunit [Rhodobacterales bacterium
          HTCC2150]
          Length = 94

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+LV+ I+ E   L ++D  R V TLF EI ++   G+ +++  F  F VKQ+ +R+
Sbjct: 1  MIRSELVQKIADENPQLFQRDVERIVNTLFEEIINALADGDRVELRGFGAFSVKQRDARI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V+++ + V  FK   +L+ R+
Sbjct: 61 GRNPRSGESVEVEAKNVPFFKTGKLLRDRL 90


>gi|294141285|ref|YP_003557263.1| integration host factor subunit alpha [Shewanella violacea DSS12]
 gi|293327754|dbj|BAJ02485.1| integration host factor, alpha subunit [Shewanella violacea
          DSS12]
          Length = 98

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 53/92 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +  G++++ +   V T F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRQALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKSRVEE 93


>gi|83313103|ref|YP_423367.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1]
 gi|82947944|dbj|BAE52808.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magneticum AMB-1]
          Length = 99

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 58/92 (63%), Gaps = 1/92 (1%)

Query: 3  KTITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          K++T+S+L+  +++    L ++D  R VTT+F+EI  +  RG+ +++  F  F VK++  
Sbjct: 2  KSMTKSELIARLAEANPHLYQRDVERIVTTIFDEIASALARGDRVELRGFGAFSVKKRDP 61

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RVGRN +T + V +D + V  FK    L++++
Sbjct: 62 RVGRNPRTGETVSVDGKAVPFFKTGKQLREKL 93


>gi|89056076|ref|YP_511527.1| integration host factor subunit beta [Jannaschia sp. CCS1]
 gi|123400948|sp|Q28LB0|IHFB_JANSC RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|88865625|gb|ABD56502.1| integration host factor beta subunit [Jannaschia sp. CCS1]
          Length = 95

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ +S E   L ++D  R V ++F E+ D+   G+ +++  F  F VK++ +R+
Sbjct: 1  MIRSELIQKLSDENPHLYQRDVERIVNSIFEEVIDALAAGDRVELRGFGAFSVKKRDARI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FKA  +L+ R+
Sbjct: 61 GRNPRTGESVSVEEKHVPFFKAGKLLRDRL 90


>gi|78187578|ref|YP_375621.1| histone-like DNA-binding protein [Chlorobium luteolum DSM 273]
 gi|78167480|gb|ABB24578.1| Histone-like DNA-binding protein [Chlorobium luteolum DSM 273]
          Length = 102

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 55/98 (56%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M  T T++DLV  I+   GL++ ++   V  LF  I DS   G  I+I  F +F+++ K 
Sbjct: 1  MGTTTTKADLVNVIAHRTGLTKNETETVVDALFESIIDSLKAGRRIEIRGFGSFNIRYKN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           R  RN +T ++V ++P+ V  FK S   K+ + + ++
Sbjct: 61 LRQARNPRTGEKVTVEPKNVPTFKISKEFKQAVSESLK 98


>gi|144899229|emb|CAM76093.1| Histone-like bacterial DNA-binding protein [Magnetospirillum
          gryphiswaldense MSR-1]
          Length = 95

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  ++ K   L ++D  R VTT+F+EI ++  RG+ +++  F  F VK + +R 
Sbjct: 1  MTKSELIARLAEKNPHLYQRDVERIVTTIFDEIAEALARGDRVELRGFGAFSVKSRDARQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++V +D + V  FK    L++R+
Sbjct: 61 GRNPRTGEQVAVDGKVVPFFKTGKQLRERL 90


>gi|317486374|ref|ZP_07945202.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
 gi|316922363|gb|EFV43621.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
          Length = 91

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 56/89 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LVK+++ +  +S  ++T  V T  + + DS + G  ++I  F +F VK+ GS  G
Sbjct: 1  MNKSELVKALADQANISLDEATLVVNTFVDSMKDSLLEGGRVEIRGFGSFKVKEYGSYAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T ++V ++P+R+  F+A   LK+ +
Sbjct: 61 RNPRTGEKVAVEPKRLPFFRAGKELKEYL 89


>gi|289522945|ref|ZP_06439799.1| DNA-binding protein HU [Anaerobaculum hydrogeniformans ATCC
          BAA-1850]
 gi|289503488|gb|EFD24652.1| DNA-binding protein HU [Anaerobaculum hydrogeniformans ATCC
          BAA-1850]
          Length = 92

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+SD+V  ++K  G+S+KD+   V      + D+  +GE ++I  F TF V+ + +R G
Sbjct: 1  MTKSDIVSEVAKATGMSKKDAAVAVDAFIKSVVDALSKGEEVQIMGFGTFEVRNRAARKG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILK 90
          RN Q  +E ++I  + V  F+A  +LK
Sbjct: 61 RNPQNPEEIIEIPEKTVPAFRAGKMLK 87


>gi|30262382|ref|NP_844759.1| DNA-binding protein HU [Bacillus anthracis str. Ames]
 gi|42781470|ref|NP_978717.1| DNA-binding protein HU [Bacillus cereus ATCC 10987]
 gi|47527672|ref|YP_019021.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor']
 gi|47565733|ref|ZP_00236773.1| DNA-binding protein HU [Bacillus cereus G9241]
 gi|49185222|ref|YP_028474.1| DNA-binding protein HU [Bacillus anthracis str. Sterne]
 gi|49479951|ref|YP_036479.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian
          str. 97-27]
 gi|52143101|ref|YP_083727.1| DNA-binding protein HU [Bacillus cereus E33L]
 gi|65319674|ref|ZP_00392633.1| COG0776: Bacterial nucleoid DNA-binding protein [Bacillus
          anthracis str. A2012]
 gi|118477778|ref|YP_894929.1| HU family DNA-binding protein [Bacillus thuringiensis str. Al
          Hakam]
 gi|165870548|ref|ZP_02215202.1| DNA-binding protein HU [Bacillus anthracis str. A0488]
 gi|167633079|ref|ZP_02391405.1| DNA-binding protein HU [Bacillus anthracis str. A0442]
 gi|167639624|ref|ZP_02397894.1| DNA-binding protein HU [Bacillus anthracis str. A0193]
 gi|170686924|ref|ZP_02878143.1| DNA-binding protein HU [Bacillus anthracis str. A0465]
 gi|170706668|ref|ZP_02897127.1| DNA-binding protein HU [Bacillus anthracis str. A0389]
 gi|177649761|ref|ZP_02932763.1| DNA-binding protein HU [Bacillus anthracis str. A0174]
 gi|190565679|ref|ZP_03018599.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I]
 gi|196034013|ref|ZP_03101424.1| DNA-binding protein HU [Bacillus cereus W]
 gi|196039953|ref|ZP_03107256.1| DNA-binding protein HU [Bacillus cereus NVH0597-99]
 gi|196043718|ref|ZP_03110956.1| DNA-binding protein HU [Bacillus cereus 03BB108]
 gi|206973759|ref|ZP_03234677.1| DNA-binding protein HU [Bacillus cereus H3081.97]
 gi|217959874|ref|YP_002338430.1| DNA-binding protein HU [Bacillus cereus AH187]
 gi|218903511|ref|YP_002451345.1| DNA-binding protein HU [Bacillus cereus AH820]
 gi|222095963|ref|YP_002530020.1| DNA-binding protein hu [Bacillus cereus Q1]
 gi|225864340|ref|YP_002749718.1| DNA-binding protein HU [Bacillus cereus 03BB102]
 gi|227814812|ref|YP_002814821.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684]
 gi|228914965|ref|ZP_04078570.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228927433|ref|ZP_04090489.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228933667|ref|ZP_04096515.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228945981|ref|ZP_04108323.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228985463|ref|ZP_04145620.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|229030079|ref|ZP_04186143.1| DNA-binding protein HU 1 [Bacillus cereus AH1271]
 gi|229091352|ref|ZP_04222567.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-42]
 gi|229121924|ref|ZP_04251143.1| DNA-binding protein HU 1 [Bacillus cereus 95/8201]
 gi|229139067|ref|ZP_04267644.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST26]
 gi|229155954|ref|ZP_04284055.1| DNA-binding protein HU 1 [Bacillus cereus ATCC 4342]
 gi|229184586|ref|ZP_04311788.1| DNA-binding protein HU 1 [Bacillus cereus BGSC 6E1]
 gi|229196589|ref|ZP_04323333.1| DNA-binding protein HU 1 [Bacillus cereus m1293]
 gi|229602245|ref|YP_002866714.1| DNA-binding protein HU [Bacillus anthracis str. A0248]
 gi|254684954|ref|ZP_05148814.1| DNA-binding protein HU [Bacillus anthracis str. CNEVA-9066]
 gi|254722361|ref|ZP_05184149.1| DNA-binding protein HU [Bacillus anthracis str. A1055]
 gi|254737402|ref|ZP_05195106.1| DNA-binding protein HU [Bacillus anthracis str. Western North
          America USA6153]
 gi|254743414|ref|ZP_05201099.1| DNA-binding protein HU [Bacillus anthracis str. Kruger B]
 gi|254751717|ref|ZP_05203754.1| DNA-binding protein HU [Bacillus anthracis str. Vollum]
 gi|254760236|ref|ZP_05212260.1| DNA-binding protein HU [Bacillus anthracis str. Australia 94]
 gi|301053896|ref|YP_003792107.1| DNA-binding protein HU [Bacillus anthracis CI]
 gi|30257013|gb|AAP26245.1| DNA-binding protein HU [Bacillus anthracis str. Ames]
 gi|42737392|gb|AAS41325.1| DNA-binding protein HU [Bacillus cereus ATCC 10987]
 gi|47502820|gb|AAT31496.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor']
 gi|47557369|gb|EAL15697.1| DNA-binding protein HU [Bacillus cereus G9241]
 gi|49179149|gb|AAT54525.1| DNA-binding protein HU [Bacillus anthracis str. Sterne]
 gi|49331507|gb|AAT62153.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian
          str. 97-27]
 gi|51976570|gb|AAU18120.1| DNA-binding protein HU [Bacillus cereus E33L]
 gi|118417003|gb|ABK85422.1| HU family DNA-binding protein [Bacillus thuringiensis str. Al
          Hakam]
 gi|164713703|gb|EDR19226.1| DNA-binding protein HU [Bacillus anthracis str. A0488]
 gi|167512333|gb|EDR87709.1| DNA-binding protein HU [Bacillus anthracis str. A0193]
 gi|167531891|gb|EDR94556.1| DNA-binding protein HU [Bacillus anthracis str. A0442]
 gi|170128399|gb|EDS97267.1| DNA-binding protein HU [Bacillus anthracis str. A0389]
 gi|170668975|gb|EDT19719.1| DNA-binding protein HU [Bacillus anthracis str. A0465]
 gi|172084835|gb|EDT69893.1| DNA-binding protein HU [Bacillus anthracis str. A0174]
 gi|190563706|gb|EDV17671.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I]
 gi|195993693|gb|EDX57650.1| DNA-binding protein HU [Bacillus cereus W]
 gi|196026027|gb|EDX64696.1| DNA-binding protein HU [Bacillus cereus 03BB108]
 gi|196029212|gb|EDX67816.1| DNA-binding protein HU [Bacillus cereus NVH0597-99]
 gi|206747915|gb|EDZ59304.1| DNA-binding protein HU [Bacillus cereus H3081.97]
 gi|217067193|gb|ACJ81443.1| DNA-binding protein HU [Bacillus cereus AH187]
 gi|218535688|gb|ACK88086.1| DNA-binding protein HU [Bacillus cereus AH820]
 gi|221240021|gb|ACM12731.1| DNA-binding protein HU [Bacillus cereus Q1]
 gi|225788591|gb|ACO28808.1| DNA-binding protein HU [Bacillus cereus 03BB102]
 gi|227004414|gb|ACP14157.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684]
 gi|228586945|gb|EEK45019.1| DNA-binding protein HU 1 [Bacillus cereus m1293]
 gi|228598903|gb|EEK56521.1| DNA-binding protein HU 1 [Bacillus cereus BGSC 6E1]
 gi|228627561|gb|EEK84287.1| DNA-binding protein HU 1 [Bacillus cereus ATCC 4342]
 gi|228644422|gb|EEL00677.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST26]
 gi|228661573|gb|EEL17194.1| DNA-binding protein HU 1 [Bacillus cereus 95/8201]
 gi|228691981|gb|EEL45723.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-42]
 gi|228731249|gb|EEL82167.1| DNA-binding protein HU 1 [Bacillus cereus AH1271]
 gi|228774228|gb|EEM22637.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228813729|gb|EEM60008.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228825994|gb|EEM71779.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228832226|gb|EEM77807.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228844761|gb|EEM89807.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|229266653|gb|ACQ48290.1| DNA-binding protein HU [Bacillus anthracis str. A0248]
 gi|300376065|gb|ADK04969.1| DNA-binding protein HU [Bacillus cereus biovar anthracis str. CI]
 gi|324326392|gb|ADY21652.1| DNA-binding protein HU [Bacillus thuringiensis serovar finitimus
          YBT-020]
          Length = 90

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 58/89 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K++++   +S+KD++  V ++F+ I  +   G+ +++  F TF V+++ +R G
Sbjct: 1  MNKTELIKNVAQSADISQKDASAAVQSVFDTIATALQSGDKVQLIGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FKA   LK+ +
Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAV 89


>gi|94264784|ref|ZP_01288562.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|93454773|gb|EAT05028.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
          Length = 91

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV  ++ E  +++ D+ R V  +   + DS   GE I I  F TF V+++ ++ G
Sbjct: 1  MNKGELVDKVAAEGKITKADADRLVKVVLGSMTDSLTNGEKITIPGFGTFEVRERAAKQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT   V+I  R+ V FK    LK
Sbjct: 61 RNPQTGATVEIPARKAVAFKPGKTLK 86


>gi|114798281|ref|YP_759882.1| putative integration host factor subunit alpha [Hyphomonas
          neptunium ATCC 15444]
 gi|114738455|gb|ABI76580.1| putative integration host factor, alpha subunit [Hyphomonas
          neptunium ATCC 15444]
          Length = 98

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 57/94 (60%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T+TR+++  +I +E G++R++S   +    + I  +  + + +K++ F  F V+ K +R
Sbjct: 4  RTLTRAEVTDAIVREVGVTRQESADLLDRTLDLIGAALEQEQEVKLARFGNFVVRSKAAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           GRN +T +E  I  RRVV F+ S +LK ++  D
Sbjct: 64 EGRNPKTGEEAPIAARRVVTFRPSPMLKSQVGGD 97


>gi|119775086|ref|YP_927826.1| integration host factor subunit alpha [Shewanella amazonensis
          SB2B]
 gi|166918523|sp|A1S700|IHFA_SHEAM RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|119767586|gb|ABM00157.1| integration host factor, alpha subunit [Shewanella amazonensis
          SB2B]
          Length = 98

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +  G++++ +   V T F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRSALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKSRV 91


>gi|302878220|ref|YP_003846784.1| integration host factor, alpha subunit [Gallionella
          capsiferriformans ES-2]
 gi|302581009|gb|ADL55020.1| integration host factor, alpha subunit [Gallionella
          capsiferriformans ES-2]
          Length = 101

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 54/96 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+++L   + ++ GL+++++   V   F EI     + E +K+S F  F ++ K  R 
Sbjct: 2  TLTKAELADLLFEKVGLNKREAKDMVEAFFEEIRVKLEQSEEVKLSGFGNFQLRDKQQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T +E+ I  RRVV F  S+ LK  +  +  G
Sbjct: 62 GRNPKTGEEIPISARRVVTFHPSAKLKNLVEKNYHG 97


>gi|241764521|ref|ZP_04762541.1| histone family protein DNA-binding protein [Acidovorax
          delafieldii 2AN]
 gi|241366057|gb|EER60661.1| histone family protein DNA-binding protein [Acidovorax
          delafieldii 2AN]
          Length = 106

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 4  TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          ++TRSDLV+ ++  F  L+ +D+   V TL + + D+ VRG  I+I  F +F V ++  R
Sbjct: 5  SMTRSDLVEELAARFSQLTHRDAEFAVKTLLDAVGDALVRGHRIEIRGFGSFSVNRRPPR 64

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +GRN ++ + V I  +RV  FK    L++ +
Sbjct: 65 MGRNPRSGEAVAIPEKRVPHFKPGKALREAV 95


>gi|320355221|ref|YP_004196560.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
 gi|320123723|gb|ADW19269.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
          Length = 93

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+SDL+++++++  L  KD+   V T+   + D+   G  +++  F +F V++     G
Sbjct: 1  MTKSDLIQALAEQMNLPVKDAKSIVDTIIGTMVDALAEGRGVELRGFGSFQVREYEGYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +++K+ P+++  FK    L+ RI
Sbjct: 61 RNPKTGEQIKVAPKKLPFFKVGKDLRDRI 89


>gi|116491040|ref|YP_810584.1| nucleoid protein Hbs [Oenococcus oeni PSU-1]
 gi|290890520|ref|ZP_06553595.1| hypothetical protein AWRIB429_0985 [Oenococcus oeni AWRIB429]
 gi|116091765|gb|ABJ56919.1| bacterial nucleoid protein Hbs [Oenococcus oeni PSU-1]
 gi|290479916|gb|EFD88565.1| hypothetical protein AWRIB429_0985 [Oenococcus oeni AWRIB429]
          Length = 91

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 48/84 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +LV S++K   L++KD+T  V  +F+ I     +GE +++  F  F V+ + +R GRN
Sbjct: 4  KQELVDSVAKATDLTKKDATAAVDAVFDSIASYLKKGEKVQLIGFGNFEVRDRAARTGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT  E+KI   +V  FK    LK
Sbjct: 64 PQTGAEIKIPASKVPAFKPGKALK 87


>gi|15924463|ref|NP_371997.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927054|ref|NP_374587.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus N315]
 gi|21283091|ref|NP_646179.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus MW2]
 gi|27468078|ref|NP_764715.1| DNA-binding protein II [Staphylococcus epidermidis ATCC 12228]
 gi|49483660|ref|YP_040884.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          MRSA252]
 gi|49486312|ref|YP_043533.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          MSSA476]
 gi|57650428|ref|YP_186357.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus COL]
 gi|57866986|ref|YP_188618.1| DNA-binding protein HU [Staphylococcus epidermidis RP62A]
 gi|82751070|ref|YP_416811.1| DNA-binding protein II [Staphylococcus aureus RF122]
 gi|87160505|ref|YP_494059.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          USA300_FPR3757]
 gi|88195207|ref|YP_500008.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus NCTC
          8325]
 gi|148267957|ref|YP_001246900.1| histone family protein DNA-binding protein [Staphylococcus aureus
          subsp. aureus JH9]
 gi|150394021|ref|YP_001316696.1| histone family protein DNA-binding protein [Staphylococcus aureus
          subsp. aureus JH1]
 gi|151221594|ref|YP_001332416.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus str.
          Newman]
 gi|156979792|ref|YP_001442051.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509640|ref|YP_001575299.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          USA300_TCH1516]
 gi|221140960|ref|ZP_03565453.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus str.
          JKD6009]
 gi|239636854|ref|ZP_04677853.1| DNA-binding protein HU 1 [Staphylococcus warneri L37603]
 gi|242242752|ref|ZP_04797197.1| DNA-binding protein II [Staphylococcus epidermidis W23144]
 gi|242373780|ref|ZP_04819354.1| DNA-binding protein II [Staphylococcus epidermidis M23864:W1]
 gi|251810895|ref|ZP_04825368.1| DNA-binding protein II [Staphylococcus epidermidis BCM-HMP0060]
 gi|253315980|ref|ZP_04839193.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus str.
          CF-Marseille]
 gi|253732115|ref|ZP_04866280.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253733280|ref|ZP_04867445.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus
          TCH130]
 gi|255006259|ref|ZP_05144860.2| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          Mu50-omega]
 gi|257425537|ref|ZP_05601962.1| histone family protein DNA-binding protein [Staphylococcus aureus
          subsp. aureus 55/2053]
 gi|257428196|ref|ZP_05604594.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus
          65-1322]
 gi|257430826|ref|ZP_05607208.1| histone family protein DNA-binding protein [Staphylococcus aureus
          subsp. aureus 68-397]
 gi|257433585|ref|ZP_05609943.1| histone family protein DNA-binding protein [Staphylococcus aureus
          subsp. aureus E1410]
 gi|257436426|ref|ZP_05612473.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus M876]
 gi|257795472|ref|ZP_05644451.1| DNA-binding protein HU [Staphylococcus aureus A9781]
 gi|258413280|ref|ZP_05681556.1| DNA-binding protein HU [Staphylococcus aureus A9763]
 gi|258420613|ref|ZP_05683555.1| DNA-binding protein II [Staphylococcus aureus A9719]
 gi|258422496|ref|ZP_05685404.1| DNA-binding protein II [Staphylococcus aureus A9635]
 gi|258426808|ref|ZP_05688028.1| DNA-binding protein HU [Staphylococcus aureus A9299]
 gi|258444806|ref|ZP_05693135.1| DNA-binding protein II [Staphylococcus aureus A8115]
 gi|258447360|ref|ZP_05695504.1| DNA-binding protein HU [Staphylococcus aureus A6300]
 gi|258449755|ref|ZP_05697856.1| DNA-binding protein II [Staphylococcus aureus A6224]
 gi|258451131|ref|ZP_05699166.1| DNA-binding protein HU [Staphylococcus aureus A5948]
 gi|258454575|ref|ZP_05702539.1| histone family protein DNA-binding protein [Staphylococcus aureus
          A5937]
 gi|262048995|ref|ZP_06021874.1| DNA-binding protein II [Staphylococcus aureus D30]
 gi|262051642|ref|ZP_06023862.1| DNA-binding protein II [Staphylococcus aureus 930918-3]
 gi|269203098|ref|YP_003282367.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ED98]
 gi|282876095|ref|ZP_06284962.1| DNA-binding protein HU [Staphylococcus epidermidis SK135]
 gi|282892970|ref|ZP_06301205.1| DNA-binding protein HU-beta [Staphylococcus aureus A8117]
 gi|282904055|ref|ZP_06311943.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus C160]
 gi|282905819|ref|ZP_06313674.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
          Btn1260]
 gi|282908789|ref|ZP_06316607.1| integration host factor, beta subunit [Staphylococcus aureus
          subsp. aureus WW2703/97]
 gi|282911050|ref|ZP_06318852.1| integration host factor, beta subunit [Staphylococcus aureus
          subsp. aureus WBG10049]
 gi|282914263|ref|ZP_06322050.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus M899]
 gi|282916740|ref|ZP_06324498.1| DNA-binding protein HBsu [Staphylococcus aureus subsp. aureus
          D139]
 gi|282919186|ref|ZP_06326921.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
          C427]
 gi|282921720|ref|ZP_06329437.1| DNA-binding protein HU [Staphylococcus aureus A9765]
 gi|282924370|ref|ZP_06332044.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus C101]
 gi|282928001|ref|ZP_06335610.1| DNA-binding protein HU-beta [Staphylococcus aureus A10102]
 gi|283770545|ref|ZP_06343437.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
          H19]
 gi|283958237|ref|ZP_06375688.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|284024471|ref|ZP_06378869.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus 132]
 gi|293366560|ref|ZP_06613237.1| DNA-binding protein HU [Staphylococcus epidermidis
          M23864:W2(grey)]
 gi|293501288|ref|ZP_06667139.1| DNA-binding protein HBsu [Staphylococcus aureus subsp. aureus
          58-424]
 gi|293510250|ref|ZP_06668958.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus M809]
 gi|293526845|ref|ZP_06671529.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          M1015]
 gi|294848436|ref|ZP_06789182.1| DNA-binding protein HU [Staphylococcus aureus A9754]
 gi|295407222|ref|ZP_06817022.1| DNA-binding protein HU-beta [Staphylococcus aureus A8819]
 gi|295427981|ref|ZP_06820613.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          EMRSA16]
 gi|296275330|ref|ZP_06857837.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MR1]
 gi|297207868|ref|ZP_06924301.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ATCC
          51811]
 gi|297244646|ref|ZP_06928529.1| DNA-binding protein HU-beta [Staphylococcus aureus A8796]
 gi|297591049|ref|ZP_06949687.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MN8]
 gi|300911953|ref|ZP_07129396.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          TCH70]
 gi|304380944|ref|ZP_07363603.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ATCC
          BAA-39]
 gi|81694468|sp|Q5HFV0|DBH_STAAC RecName: Full=DNA-binding protein HU
 gi|81696318|sp|Q6G990|DBH_STAAS RecName: Full=DNA-binding protein HU
 gi|81696482|sp|Q6GGT8|DBH_STAAR RecName: Full=DNA-binding protein HU
 gi|81704412|sp|Q7A0U9|DBH_STAAW RecName: Full=DNA-binding protein HU
 gi|81705666|sp|Q7A5J1|DBH_STAAN RecName: Full=DNA-binding protein HU
 gi|81781570|sp|Q99U17|DBH_STAAM RecName: Full=DNA-binding protein HU
 gi|27315623|gb|AAO04757.1|AE016747_254 DNA-binding protein II [Staphylococcus epidermidis ATCC 12228]
 gi|13701272|dbj|BAB42566.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus N315]
 gi|14247244|dbj|BAB57635.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus Mu50]
 gi|21204531|dbj|BAB95227.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus MW2]
 gi|49241789|emb|CAG40480.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          MRSA252]
 gi|49244755|emb|CAG43191.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          MSSA476]
 gi|57284614|gb|AAW36708.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus COL]
 gi|57637644|gb|AAW54432.1| DNA-binding protein HU [Staphylococcus epidermidis RP62A]
 gi|82656601|emb|CAI81024.1| DNA-binding protein II [Staphylococcus aureus RF122]
 gi|87126479|gb|ABD20993.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          USA300_FPR3757]
 gi|87202765|gb|ABD30575.1| DNA-binding protein HU, putative [Staphylococcus aureus subsp.
          aureus NCTC 8325]
 gi|147741026|gb|ABQ49324.1| bacterial nucleoid protein Hbs [Staphylococcus aureus subsp.
          aureus JH9]
 gi|149946473|gb|ABR52409.1| histone family protein DNA-binding protein [Staphylococcus aureus
          subsp. aureus JH1]
 gi|150374394|dbj|BAF67654.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus str.
          Newman]
 gi|156721927|dbj|BAF78344.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368449|gb|ABX29420.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          USA300_TCH1516]
 gi|239597528|gb|EEQ80026.1| DNA-binding protein HU 1 [Staphylococcus warneri L37603]
 gi|242233888|gb|EES36200.1| DNA-binding protein II [Staphylococcus epidermidis W23144]
 gi|242348517|gb|EES40119.1| DNA-binding protein II [Staphylococcus epidermidis M23864:W1]
 gi|251805575|gb|EES58232.1| DNA-binding protein II [Staphylococcus epidermidis BCM-HMP0060]
 gi|253724162|gb|EES92891.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253728820|gb|EES97549.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus
          TCH130]
 gi|257271994|gb|EEV04132.1| histone family protein DNA-binding protein [Staphylococcus aureus
          subsp. aureus 55/2053]
 gi|257275037|gb|EEV06524.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus
          65-1322]
 gi|257278954|gb|EEV09573.1| histone family protein DNA-binding protein [Staphylococcus aureus
          subsp. aureus 68-397]
 gi|257281678|gb|EEV11815.1| histone family protein DNA-binding protein [Staphylococcus aureus
          subsp. aureus E1410]
 gi|257284708|gb|EEV14828.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus M876]
 gi|257789444|gb|EEV27784.1| DNA-binding protein HU [Staphylococcus aureus A9781]
 gi|257839844|gb|EEV64312.1| DNA-binding protein HU [Staphylococcus aureus A9763]
 gi|257843561|gb|EEV67968.1| DNA-binding protein II [Staphylococcus aureus A9719]
 gi|257847253|gb|EEV71259.1| DNA-binding protein II [Staphylococcus aureus A9635]
 gi|257849969|gb|EEV73927.1| DNA-binding protein HU [Staphylococcus aureus A9299]
 gi|257850299|gb|EEV74252.1| DNA-binding protein II [Staphylococcus aureus A8115]
 gi|257853551|gb|EEV76510.1| DNA-binding protein HU [Staphylococcus aureus A6300]
 gi|257857003|gb|EEV79903.1| DNA-binding protein II [Staphylococcus aureus A6224]
 gi|257861186|gb|EEV83999.1| DNA-binding protein HU [Staphylococcus aureus A5948]
 gi|257862958|gb|EEV85722.1| histone family protein DNA-binding protein [Staphylococcus aureus
          A5937]
 gi|259160483|gb|EEW45507.1| DNA-binding protein II [Staphylococcus aureus 930918-3]
 gi|259162927|gb|EEW47490.1| DNA-binding protein II [Staphylococcus aureus D30]
 gi|262075388|gb|ACY11361.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ED98]
 gi|269940964|emb|CBI49348.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus TW20]
 gi|281295120|gb|EFA87647.1| DNA-binding protein HU [Staphylococcus epidermidis SK135]
 gi|282313757|gb|EFB44150.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus C101]
 gi|282316996|gb|EFB47370.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
          C427]
 gi|282319227|gb|EFB49579.1| DNA-binding protein HBsu [Staphylococcus aureus subsp. aureus
          D139]
 gi|282322331|gb|EFB52655.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus M899]
 gi|282324745|gb|EFB55055.1| integration host factor, beta subunit [Staphylococcus aureus
          subsp. aureus WBG10049]
 gi|282327053|gb|EFB57348.1| integration host factor, beta subunit [Staphylococcus aureus
          subsp. aureus WW2703/97]
 gi|282331111|gb|EFB60625.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
          Btn1260]
 gi|282590298|gb|EFB95378.1| DNA-binding protein HU-beta [Staphylococcus aureus A10102]
 gi|282593982|gb|EFB98971.1| DNA-binding protein HU [Staphylococcus aureus A9765]
 gi|282595673|gb|EFC00637.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus C160]
 gi|282764967|gb|EFC05092.1| DNA-binding protein HU-beta [Staphylococcus aureus A8117]
 gi|283460692|gb|EFC07782.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
          H19]
 gi|283470684|emb|CAQ49895.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Staphylococcus aureus subsp. aureus ST398]
 gi|283790386|gb|EFC29203.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|285817153|gb|ADC37640.1| DNA-binding protein II HBsu [Staphylococcus aureus 04-02981]
 gi|290920403|gb|EFD97467.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          M1015]
 gi|291096293|gb|EFE26554.1| DNA-binding protein HBsu [Staphylococcus aureus subsp. aureus
          58-424]
 gi|291319329|gb|EFE59698.1| DNA-binding protein HU [Staphylococcus epidermidis
          M23864:W2(grey)]
 gi|291467194|gb|EFF09712.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus M809]
 gi|294824462|gb|EFG40885.1| DNA-binding protein HU [Staphylococcus aureus A9754]
 gi|294967935|gb|EFG43964.1| DNA-binding protein HU-beta [Staphylococcus aureus A8819]
 gi|295128339|gb|EFG57973.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          EMRSA16]
 gi|296887442|gb|EFH26342.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ATCC
          51811]
 gi|297178676|gb|EFH37922.1| DNA-binding protein HU-beta [Staphylococcus aureus A8796]
 gi|297575935|gb|EFH94651.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MN8]
 gi|298694762|gb|ADI97984.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus
          ED133]
 gi|300886199|gb|EFK81401.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          TCH70]
 gi|302333083|gb|ADL23276.1| histone family protein DNA-binding protein HU [Staphylococcus
          aureus subsp. aureus JKD6159]
 gi|302751303|gb|ADL65480.1| histone family protein DNA-binding protein HU [Staphylococcus
          aureus subsp. aureus str. JKD6008]
 gi|304340530|gb|EFM06465.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ATCC
          BAA-39]
 gi|312438124|gb|ADQ77195.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          TCH60]
 gi|312829863|emb|CBX34705.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129189|gb|EFT85184.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          CGS03]
 gi|315195370|gb|EFU25757.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          CGS00]
 gi|315197780|gb|EFU28114.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          CGS01]
 gi|319400822|gb|EFV89041.1| DNA-binding protein HU 1 [Staphylococcus epidermidis FRI909]
 gi|320140355|gb|EFW32211.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          MRSA131]
 gi|320142718|gb|EFW34521.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          MRSA177]
 gi|323439525|gb|EGA97246.1| DNA-binding protein II [Staphylococcus aureus O11]
 gi|323442236|gb|EGA99867.1| DNA-binding protein II [Staphylococcus aureus O46]
 gi|329314149|gb|AEB88562.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          T0131]
 gi|329723176|gb|EGG59707.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
          21189]
 gi|329725443|gb|EGG61926.1| DNA-binding protein HU-beta [Staphylococcus epidermidis VCU144]
 gi|329727498|gb|EGG63954.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
          21172]
 gi|329731360|gb|EGG67726.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
          21193]
 gi|329735377|gb|EGG71669.1| DNA-binding protein HU-beta [Staphylococcus epidermidis VCU045]
 gi|329737246|gb|EGG73500.1| DNA-binding protein HU-beta [Staphylococcus epidermidis VCU028]
 gi|330686039|gb|EGG97662.1| DNA-binding protein HU-beta [Staphylococcus epidermidis VCU121]
          Length = 90

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 53/86 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++  L++K++   V  +F  I +S  +GE +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQNSLAKGEKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+ I   +V  FKA   LK
Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALK 86


>gi|148244734|ref|YP_001219428.1| integration host factor, alpha subunit [Candidatus
          Vesicomyosocius okutanii HA]
 gi|146326561|dbj|BAF61704.1| integration host factor, alpha subunit [Candidatus
          Vesicomyosocius okutanii HA]
          Length = 109

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 52/87 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +IT+ D+   + K   ++   +       F++I  +   GE++K+SSF  F +++K SRV
Sbjct: 2  SITKKDIANVLVKSMDITHVQALSITHDFFDQIKQTLASGESVKLSSFGNFIIREKSSRV 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T + V+I  RRVVVFK+   LK
Sbjct: 62 GRNPKTGEMVEISARRVVVFKSGPKLK 88


>gi|253576405|ref|ZP_04853735.1| histone family protein DNA-binding protein [Paenibacillus sp.
          oral taxon 786 str. D14]
 gi|251844298|gb|EES72316.1| histone family protein DNA-binding protein [Paenibacillus sp.
          oral taxon 786 str. D14]
          Length = 90

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+  +++   LS+KD+T+ V  +F+ I  +   G+ +++  F  F V+++ +R G
Sbjct: 1  MNKSDLIAQVAESTELSKKDATKAVDAVFDAISTALQNGDKVQLVGFGNFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   ++  FK    LK  I
Sbjct: 61 RNPQTGEEIEIPASKIPAFKPGKALKDGI 89


>gi|99080043|ref|YP_612197.1| integration host factor subunit beta [Ruegeria sp. TM1040]
 gi|259415365|ref|ZP_05739286.1| integration host factor, beta subunit [Silicibacter sp.
          TrichCH4B]
 gi|122984465|sp|Q1GK81|IHFB_SILST RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|99036323|gb|ABF62935.1| integration host factor beta subunit [Ruegeria sp. TM1040]
 gi|259348595|gb|EEW60357.1| integration host factor, beta subunit [Silicibacter sp.
          TrichCH4B]
          Length = 95

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ E   L ++D  R V T+F E+ ++  RG+ +++  F  F VK++ +RV
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTNAMSRGDRVELRGFGAFSVKKRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRL 90


>gi|319786727|ref|YP_004146202.1| integration host factor subunit alpha [Pseudoxanthomonas
          suwonensis 11-1]
 gi|317465239|gb|ADV26971.1| integration host factor, alpha subunit [Pseudoxanthomonas
          suwonensis 11-1]
          Length = 101

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  E GL+++++  FV   F+ + ++   G  +K+S F  F +++K  R 
Sbjct: 2  ALTKAEMAERLFDEVGLNKREAKEFVDAFFDVLREALQDGRQVKLSGFGNFDLRRKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  R VV F+    LK+R+
Sbjct: 62 GRNPKTGEEIPISARTVVTFRPGQKLKERV 91


>gi|229086297|ref|ZP_04218475.1| DNA-binding protein HU [Bacillus cereus Rock3-44]
 gi|228696992|gb|EEL49799.1| DNA-binding protein HU [Bacillus cereus Rock3-44]
          Length = 90

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 58/89 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K++++   +S+K++T  V ++ + I ++   GE +++  F TF V+++ +R G
Sbjct: 1  MNKTELIKNVAQTAEISQKEATVVVQSVVDSITNTLAAGEKVQLIGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FKA   LK+ +
Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKEAV 89


>gi|170017043|ref|YP_001727962.1| nucleoid DNA-binding protein [Leuconostoc citreum KM20]
 gi|169803900|gb|ACA82518.1| Bacterial nucleoid DNA-binding protein [Leuconostoc citreum KM20]
          Length = 91

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 51/87 (58%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +LV S++K  GL++KD+T  V  +F  I ++   GE +++  F  F V+ + +R GRN
Sbjct: 4  KQELVDSVAKATGLTKKDATASVDAVFASIEEALKNGEKVQLIGFGNFEVRDRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT  E++I   +V  FK    LK+ +
Sbjct: 64 PQTGAEIEIPASKVPAFKPGKALKEAV 90


>gi|149919502|ref|ZP_01907982.1| integration host factor, alpha subunit [Plesiocystis pacifica
          SIR-1]
 gi|149819627|gb|EDM79054.1| integration host factor, alpha subunit [Plesiocystis pacifica
          SIR-1]
          Length = 94

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T++D+V  +    G  S+K++   V  +F+ +      GE IKIS F  F V+ K  R 
Sbjct: 1  MTKADIVDKVCDRVGGFSKKEAADLVDQVFDTMKQVLETGEKIKISGFGNFVVRDKKPRP 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN QT  E+ I+ RRV+ FK S++LK
Sbjct: 61 GRNPQTGDEITIEARRVLTFKPSNVLK 87


>gi|28378532|ref|NP_785424.1| DNA-binding protein II [Lactobacillus plantarum WCFS1]
 gi|254556746|ref|YP_003063163.1| DNA-binding protein II [Lactobacillus plantarum JDM1]
 gi|300767478|ref|ZP_07077390.1| DNA-binding protein HU [Lactobacillus plantarum subsp. plantarum
          ATCC 14917]
 gi|308180690|ref|YP_003924818.1| non-specific DNA-binding protein HBsu [Lactobacillus plantarum
          subsp. plantarum ST-III]
 gi|28271368|emb|CAD64273.1| DNA-binding protein II [Lactobacillus plantarum WCFS1]
 gi|254045673|gb|ACT62466.1| DNA-binding protein II [Lactobacillus plantarum JDM1]
 gi|300495297|gb|EFK30453.1| DNA-binding protein HU [Lactobacillus plantarum subsp. plantarum
          ATCC 14917]
 gi|308046181|gb|ADN98724.1| non-specific DNA-binding protein HBsu [Lactobacillus plantarum
          subsp. plantarum ST-III]
          Length = 91

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 51/87 (58%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV +++    L++KD+T  V  +F  I D+  +GE +++  F  F V+++ +R GRN
Sbjct: 4  KAELVNNVAAATNLTKKDATAAVDAVFASIQDTLAKGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT  E++I   +V  FK    LK  +
Sbjct: 64 PQTGDEIQIPASKVPAFKPGKALKDAV 90


>gi|116618389|ref|YP_818760.1| nucleoid protein Hbs [Leuconostoc mesenteroides subsp.
          mesenteroides ATCC 8293]
 gi|227431692|ref|ZP_03913722.1| non-specific DNA-binding protein HBsu [Leuconostoc mesenteroides
          subsp. cremoris ATCC 19254]
 gi|116097236|gb|ABJ62387.1| bacterial nucleoid protein Hbs [Leuconostoc mesenteroides subsp.
          mesenteroides ATCC 8293]
 gi|227352516|gb|EEJ42712.1| non-specific DNA-binding protein HBsu [Leuconostoc mesenteroides
          subsp. cremoris ATCC 19254]
          Length = 91

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 51/87 (58%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +LV S++K  GL++KD+T  V  +F  I ++   GE +++  F  F V+ + +R GRN
Sbjct: 4  KQELVDSVAKATGLTKKDATASVDAVFASIEEALKNGEKVQLIGFGNFEVRDRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT +E++I   +V  FK    LK  +
Sbjct: 64 PQTGEEIQIAASKVPAFKPGKALKDAV 90


>gi|308066881|ref|YP_003868486.1| DNA-binding protein HU (DNA-binding protein II) [Paenibacillus
          polymyxa E681]
 gi|310639519|ref|YP_003944277.1| DNA-binding protein hu-alpha (histone-like protein)
          [Paenibacillus polymyxa SC2]
 gi|305856160|gb|ADM67948.1| DNA-binding protein HU (DNA-binding protein II) [Paenibacillus
          polymyxa E681]
 gi|309244469|gb|ADO54036.1| DNA-binding protein HU-alpha (Histone-like protein)
          [Paenibacillus polymyxa SC2]
          Length = 90

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +IS + GLS++D    +  +  EI D+   G+ +++  F TF  +++ SR G
Sbjct: 1  MNKTDLINNISSKSGLSKRDVEAVLNGVLGEITDALASGDKVQLIGFGTFETRKRSSRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I    V  FKA + LK+ +
Sbjct: 61 RNPQTGNTIEIPESTVPAFKAGNKLKEAV 89


>gi|330720848|gb|EGG99044.1| Integration host factor alpha subunit [gamma proteobacterium
          IMCC2047]
          Length = 100

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 52/92 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++ + + +  E GL+++++   V   F E+  S +  + +K+S F  F ++ K  R 
Sbjct: 3  ALTKAAIAEKLFDELGLNKREAKEIVEMFFGEVRQSLINNDQVKLSGFGNFGLRDKKERP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK ++ D
Sbjct: 63 GRNPKTGEDIPISARRVVTFRPGQKLKAKVED 94


>gi|297584429|ref|YP_003700209.1| histone family protein DNA-binding protein [Bacillus
          selenitireducens MLS10]
 gi|297142886|gb|ADH99643.1| histone family protein DNA-binding protein [Bacillus
          selenitireducens MLS10]
          Length = 90

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   LS+KD+T  V  +F  I DS  +G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTELINAVAESADLSKKDATSAVDAVFEVITDSLKKGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I    V  FK    LK  +
Sbjct: 61 RNPQTGEEIEIPASNVPAFKPGKALKDAV 89


>gi|228476046|ref|ZP_04060754.1| DNA-binding protein HU 1 [Staphylococcus hominis SK119]
 gi|314936394|ref|ZP_07843741.1| DNA-binding protein HU [Staphylococcus hominis subsp. hominis
          C80]
 gi|228269869|gb|EEK11349.1| DNA-binding protein HU 1 [Staphylococcus hominis SK119]
 gi|313655013|gb|EFS18758.1| DNA-binding protein HU [Staphylococcus hominis subsp. hominis
          C80]
          Length = 90

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 54/86 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++  L++K++   V  +F  I +S  +GE +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQNSLSKGEKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I   +V  FKA   LK
Sbjct: 61 RNPQTGKEIEIPASKVPAFKAGKALK 86


>gi|47565972|ref|ZP_00237010.1| DNA-binding protein HU [Bacillus cereus G9241]
 gi|47556889|gb|EAL15219.1| DNA-binding protein HU [Bacillus cereus G9241]
          Length = 90

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 55/89 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ ++++   LS+KD+T+ V  +F+ I ++  +G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FK     K  +
Sbjct: 61 RNPQTGEEIEIAASKVPAFKPGKAFKDAV 89


>gi|110681046|ref|YP_684053.1| integration host factor subunit beta [Roseobacter denitrificans
          OCh 114]
 gi|122972521|sp|Q161H6|IHFB_ROSDO RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|109457162|gb|ABG33367.1| integration host factor, beta subunit [Roseobacter denitrificans
          OCh 114]
          Length = 94

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ E   L ++D  R V T+F E+  +  RG+ +++  F  F VK++ +R+
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTIFEEVTGAMARGDRVELRGFGAFSVKKRDARI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRL 90


>gi|118586877|ref|ZP_01544311.1| histone-like DNA-binding protein [Oenococcus oeni ATCC BAA-1163]
 gi|118432709|gb|EAV39441.1| histone-like DNA-binding protein [Oenococcus oeni ATCC BAA-1163]
          Length = 107

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 48/84 (57%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
           + +LV S++K   L++KD+T  V  +F+ I     +GE +++  F  F V+ + +R GRN
Sbjct: 20  KQELVDSVAKATDLTKKDATAAVDAVFDSIASYLKKGEKVQLIGFGNFEVRDRAARTGRN 79

Query: 67  LQTNQEVKIDPRRVVVFKASSILK 90
            QT  E+KI   +V  FK    LK
Sbjct: 80  PQTGAEIKIPASKVPAFKPGKALK 103


>gi|77465590|ref|YP_355093.1| integration host factor subunit beta [Rhodobacter sphaeroides
          2.4.1]
 gi|14194882|sp|Q9X4E2|IHFB_RHOS4 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|4761124|gb|AAD29258.1|AF107093_3 integration host factor beta-subunit [Rhodobacter sphaeroides]
 gi|77390008|gb|ABA81192.1| Integration host factor beta-subunit [Rhodobacter sphaeroides
          2.4.1]
          Length = 93

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ E   L+++   R V T+F EI ++  RG+ +++  F  F VK + +RV
Sbjct: 1  MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALARGDRVELRGFGAFSVKARDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V+++ ++V  FK   +L+ R+
Sbjct: 61 GRNPRTGEAVEVEDKKVPFFKTGKLLRDRL 90


>gi|78223040|ref|YP_384787.1| histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
 gi|78194295|gb|ABB32062.1| Histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
          Length = 93

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 55/89 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++++ E GL+ K +   V+ +F+ + D+ VR E I+I  F +F VK   +  G
Sbjct: 1  MNKSELIEALAAEKGLTYKKAEEIVSIVFDAMTDAMVRNERIEIRGFGSFVVKDYKAYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   +++ P+++  FK    LK+R+
Sbjct: 61 RNPKTGDPIEVKPKKLPFFKVGKELKERV 89


>gi|194336507|ref|YP_002018301.1| histone family protein DNA-binding protein [Pelodictyon
          phaeoclathratiforme BU-1]
 gi|194308984|gb|ACF43684.1| histone family protein DNA-binding protein [Pelodictyon
          phaeoclathratiforme BU-1]
          Length = 102

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 55/98 (56%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M  T T+ DLV  I+   GL++ ++   V +LF  I DS   G+ I+I  F +F+++ K 
Sbjct: 1  MGTTTTKVDLVNVIAHRTGLTKNETESVVNSLFESIIDSLKAGKRIEIRGFGSFNIRHKN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           R  RN +T ++V ++P+ V  FK S   K  + + ++
Sbjct: 61 LRQARNPRTGEKVTVEPKNVPAFKISKEFKLAVSESLK 98


>gi|146279885|ref|YP_001170043.1| integration host factor subunit beta [Rhodobacter sphaeroides
          ATCC 17025]
 gi|145558126|gb|ABP72738.1| hypothetical protein Rsph17025_3883 [Rhodobacter sphaeroides ATCC
          17025]
          Length = 93

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ E   L+++   R V T+F EI ++  RG+ +++  F  F VK + +RV
Sbjct: 1  MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALARGDRVELRGFGAFSVKSRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V+++ ++V  FK   +L+ R+
Sbjct: 61 GRNPRTGEAVEVEDKKVPFFKTGKLLRDRL 90


>gi|121605691|ref|YP_983020.1| integration host factor subunit beta [Polaromonas
          naphthalenivorans CJ2]
 gi|120594660|gb|ABM38099.1| integration host factor, beta subunit [Polaromonas
          naphthalenivorans CJ2]
          Length = 104

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDLV+ ++  F  L+ +D+   V TL + + D+ VRG  I+I  F +F + ++  R+
Sbjct: 1  MTRSDLVEELAARFSQLTHRDAEHAVKTLLDAMSDTLVRGNRIEIRGFGSFSINRRPPRM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V I  +RV  FK    L++ +
Sbjct: 61 GRNPRSGESVAIPEKRVPHFKPGKALREAV 90


>gi|126464029|ref|YP_001045142.1| integration host factor subunit beta [Rhodobacter sphaeroides
          ATCC 17029]
 gi|221369597|ref|YP_002520693.1| integration host factor subunit beta [Rhodobacter sphaeroides
          KD131]
 gi|332561262|ref|ZP_08415580.1| integration host factor subunit beta [Rhodobacter sphaeroides
          WS8N]
 gi|166975885|sp|A3PPV4|IHFB_RHOS1 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|254803538|sp|B9KU92|IHFB_RHOSK RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|126105840|gb|ABN78370.1| integration host factor, beta subunit [Rhodobacter sphaeroides
          ATCC 17029]
 gi|221162649|gb|ACM03620.1| Integration host factor subunit beta [Rhodobacter sphaeroides
          KD131]
 gi|332275060|gb|EGJ20376.1| integration host factor subunit beta [Rhodobacter sphaeroides
          WS8N]
          Length = 93

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ E   L+++   R V T+F EI ++  RG+ +++  F  F VK + +RV
Sbjct: 1  MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALARGDRVELRGFGAFSVKARDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V+++ ++V  FK   +L+ R+
Sbjct: 61 GRNPRTGEAVEVEDKKVPFFKTGKLLRDRL 90


>gi|83951656|ref|ZP_00960388.1| integration host factor, beta subunit [Roseovarius nubinhibens
          ISM]
 gi|83836662|gb|EAP75959.1| integration host factor, beta subunit [Roseovarius nubinhibens
          ISM]
          Length = 94

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ E   L ++D  + V T+FNEI D+  +G  +++  F  F VK++ +R 
Sbjct: 1  MIRSELIQKIADENPHLFQRDVEKIVNTIFNEITDAMAKGNRVELRGFGAFSVKKRDARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V+++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGETVEVEEKHVPFFKTGKLLRDRL 90


>gi|171463686|ref|YP_001797799.1| integration host factor, alpha subunit [Polynucleobacter
          necessarius subsp. necessarius STIR1]
 gi|171193224|gb|ACB44185.1| integration host factor, alpha subunit [Polynucleobacter
          necessarius subsp. necessarius STIR1]
          Length = 107

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 52/87 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+++L +++  + GL+++++   +   F+ I  S   G  +KIS F  F ++ K +R 
Sbjct: 9  TVTKNELSEALFDQVGLNKREAKDMIDAFFDRIGRSLEAGVEVKISGFGNFQLRNKSARP 68

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T Q + I  RRVV F AS  LK
Sbjct: 69 GRNPKTGQMIPIAARRVVTFHASQKLK 95


>gi|291544066|emb|CBL17175.1| Bacterial nucleoid DNA-binding protein [Ruminococcus sp. 18P13]
          Length = 91

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 54/86 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLVK++S++    +KD+   + T+ + I D+  +GE ++I  F TF V+++G +  
Sbjct: 1  MTKADLVKAVSEKANCPKKDAEMAINTVIDCITDAVAQGEKVQIVGFGTFEVRERGEKKC 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          +N +T +E+    ++  VFKA   LK
Sbjct: 61 KNPRTGEEMITPAKKAPVFKAGKALK 86


>gi|127513142|ref|YP_001094339.1| integration host factor, alpha subunit [Shewanella loihica PV-4]
 gi|166918526|sp|A3QF32|IHFA_SHELP RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|126638437|gb|ABO24080.1| integration host factor, alpha subunit [Shewanella loihica PV-4]
          Length = 98

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 54/97 (55%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ + + +  G++++ +   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAEMAEHLFETLGINKRVAKEMVEAFFEEIRQALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T +++ I  RRVV F+    LK R+ +   G+
Sbjct: 62  GRNPKTGEDIPISARRVVTFRPGQKLKSRVEEANAGK 98


>gi|121730318|ref|ZP_01682684.1| integration host factor, alpha subunit [Vibrio cholerae V52]
 gi|121627928|gb|EAX60500.1| integration host factor, alpha subunit [Vibrio cholerae V52]
          Length = 85

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 50/84 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L +++ ++ G+S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAELAEALFEQLGMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASS 87
          GRN +T +++ I  RRVV F+   
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQ 85


>gi|104774450|ref|YP_619430.1| histone-like DNA-binding protein [Lactobacillus delbrueckii
          subsp. bulgaricus ATCC 11842]
 gi|116514550|ref|YP_813456.1| nucleoid DNA-binding protein [Lactobacillus delbrueckii subsp.
          bulgaricus ATCC BAA-365]
 gi|300812638|ref|ZP_07093050.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp.
          bulgaricus PB2003/044-T3-4]
 gi|21633218|gb|AAM22481.1| HlbB [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103423531|emb|CAI98435.1| Histone-like DNA-binding protein [Lactobacillus delbrueckii
          subsp. bulgaricus ATCC 11842]
 gi|116093865|gb|ABJ59018.1| bacterial nucleoid protein Hbs [Lactobacillus delbrueckii subsp.
          bulgaricus ATCC BAA-365]
 gi|300496368|gb|EFK31478.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp.
          bulgaricus PB2003/044-T3-4]
 gi|325126261|gb|ADY85591.1| HlbB protein [Lactobacillus delbrueckii subsp. bulgaricus 2038]
 gi|325685672|gb|EGD27753.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp. lactis
          DSM 20072]
          Length = 90

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 52/86 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  +S++   S+K+S + V  LF  I ++  +GE +++  F TF V+++ +R G
Sbjct: 1  MNKTELVSVVSEKTEFSKKESAQIVDALFASIEEALAKGEKVQLIGFGTFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT  E++I   +V  FK    LK
Sbjct: 61 RNPQTGAEIEIPASKVPAFKPGKALK 86


>gi|152979083|ref|YP_001344712.1| integration host factor, alpha subunit [Actinobacillus
          succinogenes 130Z]
 gi|171704314|sp|A6VP80|IHFA_ACTSZ RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|150840806|gb|ABR74777.1| integration host factor, alpha subunit [Actinobacillus
          succinogenes 130Z]
          Length = 98

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ ++ ++++++  L++ ++   V + F EI  +   G  +K+S F  F ++ K SR 
Sbjct: 2  TLTKVEIAENLTRKLELNKTEAKAMVESFFEEIRATLADGHNVKLSGFGNFELRDKASRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + + +  RRVVVF+    L+ R+
Sbjct: 62 GRNPKTGENIPVSARRVVVFRPGQKLRARV 91


>gi|228988924|ref|ZP_04148973.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228770838|gb|EEM19354.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
          Length = 90

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 55/89 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K +++   L++KD++     + + I ++ + GE +++  F TF V+++ +R G
Sbjct: 1  MNKTELIKQVAENTELTQKDASAATQAVLDTITEALMNGEKVQLIGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FKA   LK  +
Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKAAV 89


>gi|258406020|ref|YP_003198762.1| histone family protein DNA-binding protein [Desulfohalobium
          retbaense DSM 5692]
 gi|257798247|gb|ACV69184.1| histone family protein DNA-binding protein [Desulfohalobium
          retbaense DSM 5692]
          Length = 90

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 53/86 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DL+  ++++ GL++ D+ R V      + D+ V+   + ++ F TF V+++ +R G
Sbjct: 1  MTKADLIGKVAEKSGLTKADAERAVNGFLESVEDTLVKEGKLTMTGFGTFSVEERKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT QE+ I   +VV F+   +LK
Sbjct: 61 RNPQTGQEITIPASKVVKFRPGKLLK 86


>gi|228994795|ref|ZP_04154593.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442]
 gi|228998490|ref|ZP_04158078.1| DNA-binding protein HU [Bacillus mycoides Rock3-17]
 gi|229005965|ref|ZP_04163656.1| DNA-binding protein HU [Bacillus mycoides Rock1-4]
 gi|228755282|gb|EEM04636.1| DNA-binding protein HU [Bacillus mycoides Rock1-4]
 gi|228761215|gb|EEM10173.1| DNA-binding protein HU [Bacillus mycoides Rock3-17]
 gi|228764903|gb|EEM13659.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442]
          Length = 90

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 57/89 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K++++   +S+K++T  V ++   I ++   GE +++  F TF V+++ +R G
Sbjct: 1  MNKTELIKNVAQTAEISQKEATVVVQSVVESITNTLAAGEKVQLIGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FKA   LK+ +
Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKEAV 89


>gi|225873248|ref|YP_002754707.1| DNA-binding protein HU 1 [Acidobacterium capsulatum ATCC 51196]
 gi|225792876|gb|ACO32966.1| DNA-binding protein HU 1 [Acidobacterium capsulatum ATCC 51196]
          Length = 107

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 53/86 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV+ ++K   L+R+D    V T+F+ +  +   G+ I+I  F +F V+Q+  RVG
Sbjct: 1  MTKADLVEELTKSGELTRRDGEVIVDTIFDSVIAALKSGDKIEIRGFGSFRVRQRNPRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T  +V +  ++V  FK S  L+
Sbjct: 61 RNPKTGAKVDVPAKKVPYFKPSKELR 86


>gi|328957353|ref|YP_004374739.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Carnobacterium sp. 17-4]
 gi|328673677|gb|AEB29723.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Carnobacterium sp. 17-4]
          Length = 91

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 51/87 (58%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++L+++++   GL++KD+T  V  +F  I  S   GE ++I  F  F V+ + +R GRN
Sbjct: 4  KAELIENVATSTGLTKKDATSAVDAVFESIQTSLSEGEKVQIIGFGNFEVRDRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT +E++I   +V  FK    LK  +
Sbjct: 64 PQTGEEIQIAASKVPAFKPGKALKDAV 90


>gi|209516669|ref|ZP_03265522.1| integration host factor, alpha subunit [Burkholderia sp. H160]
 gi|295677042|ref|YP_003605566.1| integration host factor, alpha subunit [Burkholderia sp. CCGE1002]
 gi|209502944|gb|EEA02947.1| integration host factor, alpha subunit [Burkholderia sp. H160]
 gi|295436885|gb|ADG16055.1| integration host factor, alpha subunit [Burkholderia sp. CCGE1002]
          Length = 136

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   G+++K+S F  F ++ K  
Sbjct: 35  TPTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQ 94

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 95  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 126


>gi|255263556|ref|ZP_05342898.1| integration host factor, beta subunit [Thalassiobium sp. R2A62]
 gi|255105891|gb|EET48565.1| integration host factor, beta subunit [Thalassiobium sp. R2A62]
          Length = 93

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+LV+ I+ E   L ++D  + V T+F+EI ++   G+ +++  F  F VK++ +R 
Sbjct: 1  MIRSELVQKIADENPHLYQRDVEKIVNTIFDEITEAMADGDRVELRGFGAFSVKRRDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FKA  +L+ R+
Sbjct: 61 GRNPRTGESVHVEEKHVPFFKAGKLLRDRL 90


>gi|213649077|ref|ZP_03379130.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Typhi str. J185]
          Length = 92

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 43/76 (56%)

Query: 18 FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDP 77
           GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R GRN +T +++ I  
Sbjct: 9  LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITA 68

Query: 78 RRVVVFKASSILKKRI 93
          RRVV F+    LK R+
Sbjct: 69 RRVVTFRPGQKLKSRV 84


>gi|134297994|ref|YP_001111490.1| histone family protein DNA-binding protein [Desulfotomaculum
          reducens MI-1]
 gi|134050694|gb|ABO48665.1| bacterial nucleoid protein Hbs [Desulfotomaculum reducens MI-1]
          Length = 95

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 56/91 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  LS+KD+ + V+ +   I ++  +G+ I++  F TF  K + +R G
Sbjct: 1  MNKAELISAVAEKTELSKKDAEKAVSAVLGSIEEALAKGDKIQLVGFGTFESKPRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT   ++I   RV VFKA  +LK  + +
Sbjct: 61 RNPQTGDTIQIPATRVPVFKAGKVLKDAVAN 91


>gi|332759234|gb|EGJ89543.1| integration host factor, alpha subunit [Shigella flexneri K-671]
          Length = 92

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 43/76 (56%)

Query: 18 FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDP 77
           GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R GRN +T +++ I  
Sbjct: 9  LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITA 68

Query: 78 RRVVVFKASSILKKRI 93
          RRVV F+    LK R+
Sbjct: 69 RRVVTFRPGQKLKSRV 84


>gi|56964681|ref|YP_176412.1| DNA-binding protein HU [Bacillus clausii KSM-K16]
 gi|56910924|dbj|BAD65451.1| DNA-binding protein HU [Bacillus clausii KSM-K16]
          Length = 90

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 55/86 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   LS+KD++  V ++F+ I +S  +GE++++  F  F V+++ +R G
Sbjct: 1  MNKTELINALAERTQLSKKDASAAVNSMFDLISESLGKGESVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+ I   +   FKA   LK
Sbjct: 61 RNPQTGEEIDIAATKTPAFKAGKQLK 86


>gi|297616318|ref|YP_003701477.1| histone family protein DNA-binding protein [Syntrophothermus
          lipocalidus DSM 12680]
 gi|297144155|gb|ADI00912.1| histone family protein DNA-binding protein [Syntrophothermus
          lipocalidus DSM 12680]
          Length = 90

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++ +  +++KD  + + TLF  I ++   G  +++  F TF V+++ +R G
Sbjct: 1  MNKTDLVAKVASKANMTKKDVEKVINTLFATIEEALKDGSKVQLVGFGTFEVRERQARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   R+  FKA   LK  ++
Sbjct: 61 RNPQTGEEIEIPAARIPAFKAGKALKDAVV 90


>gi|24379067|ref|NP_721022.1| putative DNA-binding protein [Streptococcus mutans UA159]
 gi|290580914|ref|YP_003485306.1| putative DNA-binding protein [Streptococcus mutans NN2025]
 gi|14194638|sp|Q9XB21|DBH_STRMU RecName: Full=DNA-binding protein HU
 gi|5209332|gb|AAD40810.1|L40355_1 histone-like DNA-binding protein [Streptococcus mutans]
 gi|24376965|gb|AAN58328.1|AE014903_4 putative DNA-binding protein [Streptococcus mutans UA159]
 gi|254997813|dbj|BAH88414.1| putative DNA-binding protein [Streptococcus mutans NN2025]
          Length = 91

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 49/84 (58%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F+ +     +GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E+KI   +V  FKA   LK
Sbjct: 64 PQTGEEIKIKASKVPAFKAGKALK 87


>gi|114328684|ref|YP_745841.1| integration host factor subunit beta [Granulibacter bethesdensis
          CGDNIH1]
 gi|122326362|sp|Q0BQI4|IHFB_GRABC RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|114316858|gb|ABI62918.1| integration host factor beta-subunit [Granulibacter bethesdensis
          CGDNIH1]
          Length = 107

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 59/95 (62%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ S+ +    L+ +D    V+T+F+EI ++  RG  +++  F  F +K++ +RV
Sbjct: 1  MTKSELIASLKADNPHLTERDVETIVSTIFDEISNALARGARVELRGFGAFTIKRRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T + V +D + V  FKA   L++R+ +  R
Sbjct: 61 GRNPRTGETVSVDEKVVPFFKAGKELRERVNNGTR 95


>gi|186476310|ref|YP_001857780.1| integration host factor subunit alpha [Burkholderia phymatum
           STM815]
 gi|184192769|gb|ACC70734.1| integration host factor, alpha subunit [Burkholderia phymatum
           STM815]
          Length = 117

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   G+++K+S F  F ++ K  
Sbjct: 16  APTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQ 75

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 76  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 107


>gi|269468801|gb|EEZ80405.1| DNA-binding protein HU [uncultured SUP05 cluster bacterium]
          Length = 90

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+   GLS+ D+ R +      I  +  +G+ ++I+ F +F V+ + +R G
Sbjct: 1  MNKSELIDAIASTSGLSKADAGRALNATTGAITSAMAKGDGVQITGFGSFVVRDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I   +V  FKA   LK+ +
Sbjct: 61 RNPQTGATIQIKASKVAAFKAGKALKEAV 89


>gi|325266870|ref|ZP_08133541.1| integration host factor subunit alpha [Kingella denitrificans
          ATCC 33394]
 gi|324981611|gb|EGC17252.1| integration host factor subunit alpha [Kingella denitrificans
          ATCC 33394]
          Length = 102

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 4  TITRSDLVK-SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T+T+++L    + K   +S+ ++   V   F EI     RGE IKIS F  F ++ K  R
Sbjct: 2  TLTKAELADILVEKVSSVSKTEAKEIVELFFEEIRSVLARGEEIKISGFGNFQLRNKPER 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN +T +EV I  RRVV F AS  LK
Sbjct: 62 PGRNPKTGKEVAISARRVVTFHASQKLK 89


>gi|91784422|ref|YP_559628.1| integration host factor subunit alpha [Burkholderia xenovorans
           LB400]
 gi|296163121|ref|ZP_06845892.1| integration host factor, alpha subunit [Burkholderia sp. Ch1-1]
 gi|91688376|gb|ABE31576.1| Integration host factor, alpha subunit [Burkholderia xenovorans
           LB400]
 gi|295886623|gb|EFG66470.1| integration host factor, alpha subunit [Burkholderia sp. Ch1-1]
          Length = 136

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   G+++K+S F  F ++ K  
Sbjct: 35  TPTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQ 94

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 95  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 126


>gi|170695990|ref|ZP_02887128.1| integration host factor, alpha subunit [Burkholderia graminis
           C4D1M]
 gi|307730396|ref|YP_003907620.1| integration host factor subunit alpha [Burkholderia sp. CCGE1003]
 gi|323526730|ref|YP_004228883.1| integration host factor subunit alpha [Burkholderia sp. CCGE1001]
 gi|170139070|gb|EDT07260.1| integration host factor, alpha subunit [Burkholderia graminis
           C4D1M]
 gi|307584931|gb|ADN58329.1| integration host factor, alpha subunit [Burkholderia sp. CCGE1003]
 gi|323383732|gb|ADX55823.1| integration host factor, alpha subunit [Burkholderia sp. CCGE1001]
          Length = 136

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   G+++K+S F  F ++ K  
Sbjct: 35  TPTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQ 94

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 95  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 126


>gi|120598987|ref|YP_963561.1| integration host factor subunit alpha [Shewanella sp. W3-18-1]
 gi|126174101|ref|YP_001050250.1| integration host factor subunit alpha [Shewanella baltica OS155]
 gi|146292928|ref|YP_001183352.1| integration host factor subunit alpha [Shewanella putrefaciens
          CN-32]
 gi|153000427|ref|YP_001366108.1| integration host factor subunit alpha [Shewanella baltica OS185]
 gi|160875024|ref|YP_001554340.1| integration host factor subunit alpha [Shewanella baltica OS195]
 gi|217973584|ref|YP_002358335.1| integration host factor subunit alpha [Shewanella baltica OS223]
 gi|304411359|ref|ZP_07392973.1| integration host factor, alpha subunit [Shewanella baltica OS183]
 gi|307305319|ref|ZP_07585067.1| integration host factor, alpha subunit [Shewanella baltica BA175]
 gi|166918524|sp|A3D3R8|IHFA_SHEB5 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|166918525|sp|A6WMK6|IHFA_SHEB8 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|166918527|sp|A4Y6H0|IHFA_SHEPC RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|166918529|sp|A1RK12|IHFA_SHESW RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|189045029|sp|A9KYZ2|IHFA_SHEB9 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|254803521|sp|B8E7F3|IHFA_SHEB2 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|120559080|gb|ABM25007.1| integration host factor, alpha subunit [Shewanella sp. W3-18-1]
 gi|125997306|gb|ABN61381.1| integration host factor, alpha subunit [Shewanella baltica OS155]
 gi|145564618|gb|ABP75553.1| integration host factor, alpha subunit [Shewanella putrefaciens
          CN-32]
 gi|151365045|gb|ABS08045.1| integration host factor, alpha subunit [Shewanella baltica OS185]
 gi|160860546|gb|ABX49080.1| integration host factor, alpha subunit [Shewanella baltica OS195]
 gi|217498719|gb|ACK46912.1| integration host factor, alpha subunit [Shewanella baltica OS223]
 gi|304350214|gb|EFM14618.1| integration host factor, alpha subunit [Shewanella baltica OS183]
 gi|306911622|gb|EFN42047.1| integration host factor, alpha subunit [Shewanella baltica BA175]
 gi|315267256|gb|ADT94109.1| integration host factor, alpha subunit [Shewanella baltica OS678]
 gi|319426543|gb|ADV54617.1| integration host factor, alpha subunit [Shewanella putrefaciens
          200]
          Length = 98

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +  G++++ +   V + F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAEHLFETLGMNKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRV 91


>gi|218777883|ref|YP_002429201.1| histone family protein DNA-binding protein [Desulfatibacillum
          alkenivorans AK-01]
 gi|218759267|gb|ACL01733.1| histone family protein DNA-binding protein [Desulfatibacillum
          alkenivorans AK-01]
          Length = 91

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV ++    G+S+ D+ + V   F+ + D+   GE ++I    +F VK+  S  G
Sbjct: 1  MNKLELVSTLKNRAGISKTDAAKIVQIFFDSMADALAEGERVEIRGLCSFFVKEYKSYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + VKI P+++  FK    LK+R+
Sbjct: 61 RNPKTGEPVKISPKKLPFFKCGKELKERV 89


>gi|154502285|ref|ZP_02039345.1| hypothetical protein RUMGNA_00096 [Ruminococcus gnavus ATCC
          29149]
 gi|153797164|gb|EDN79584.1| hypothetical protein RUMGNA_00096 [Ruminococcus gnavus ATCC
          29149]
          Length = 92

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDL+K+I+++  G++++ +   V    + I D+   G+ ++   F +F V+++  R 
Sbjct: 1  MTRSDLIKTIAEKVDGVTQEKAKEIVAVTLDSIADALTAGDKVQFVGFGSFEVRERAGRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN Q   E+ I+P + V FKA   LK ++
Sbjct: 61 GRNPQDGSEIYIEPSKNVKFKAGKELKDKV 90


>gi|187924726|ref|YP_001896368.1| integration host factor subunit alpha [Burkholderia phytofirmans
           PsJN]
 gi|187715920|gb|ACD17144.1| integration host factor, alpha subunit [Burkholderia phytofirmans
           PsJN]
          Length = 136

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 53/92 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   G+++K+S F  F ++ K  
Sbjct: 35  TPTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQ 94

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + + I  RRVV F AS  LK  +
Sbjct: 95  RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 126


>gi|70726439|ref|YP_253353.1| DNA-binding protein II [Staphylococcus haemolyticus JCSC1435]
 gi|68447163|dbj|BAE04747.1| DNA-binding protein II [Staphylococcus haemolyticus JCSC1435]
          Length = 90

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 53/86 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++  L++K++   V  +F  I  S  +GE +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQQSLSKGEKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I   +V  FKA   LK
Sbjct: 61 RNPQTGKEIEIPASKVPAFKAGKALK 86


>gi|291530746|emb|CBK96331.1| bacterial nucleoid protein Hbs [Eubacterium siraeum 70/3]
 gi|291557742|emb|CBL34859.1| bacterial nucleoid protein Hbs [Eubacterium siraeum V10Sc8a]
          Length = 91

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 55/86 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  ++++  L++KD+ + ++ L   I ++  +GE I++  F TF V+++ +R G
Sbjct: 1  MTKAELVTMVAEKADLTKKDAEKAISALVESISETLAKGEKIQLVGFGTFEVRERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N +T  ++KI   +V  FKA S LK
Sbjct: 61 VNPRTGDKIKIAASKVPAFKAGSALK 86


>gi|228949548|ref|ZP_04111797.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228810128|gb|EEM56500.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
          Length = 90

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 55/89 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  +S++  L++KD+T  V  + ++I  S  + E++++  F TF V+++ +R G
Sbjct: 1  MNKTELINQVSEKTSLTKKDATASVQAVLDQITQSLQKDESVQLIGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +   FKA   LK+ +
Sbjct: 61 RNPQTGEEMHIPGGKAPAFKAGKALKEAV 89


>gi|313124300|ref|YP_004034559.1| DNA-binding protein hu-alpha (histone-like protein)
          [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280863|gb|ADQ61582.1| DNA-binding protein HU-alpha (Histone-like protein)
          [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 90

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 52/86 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  +S++   S+K+S + V  LF  I ++  +GE +++  F TF ++++ +R G
Sbjct: 1  MNKTELVSVVSEKTEFSKKESAQIVDALFASIEEALAKGEKVQLIGFGTFEIRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT  E++I   +V  FK    LK
Sbjct: 61 RNPQTGAEIEIPASKVPAFKPGKALK 86


>gi|189424909|ref|YP_001952086.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
 gi|189421168|gb|ACD95566.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
          Length = 93

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 55/91 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++ + +  +S K +   V  +FN + ++   GE I+I    +F VK+ G+  G
Sbjct: 1  MNKSELIETFALQREISHKRAEEVVNMIFNSMSEAMTAGERIEIRGLGSFVVKEYGAYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + +++ P+++  FK    LK+RI+D
Sbjct: 61 RNPKTGEPIEVKPKKLPFFKVGKELKERILD 91


>gi|227551167|ref|ZP_03981216.1| DNA-binding protein II [Enterococcus faecium TX1330]
 gi|257877996|ref|ZP_05657649.1| DNA binding protein HU [Enterococcus faecium 1,230,933]
 gi|257881217|ref|ZP_05660870.1| DNA binding protein HU [Enterococcus faecium 1,231,502]
 gi|257884881|ref|ZP_05664534.1| DNA binding protein HU [Enterococcus faecium 1,231,501]
 gi|257887715|ref|ZP_05667368.1| DNA binding protein HU [Enterococcus faecium 1,141,733]
 gi|257889805|ref|ZP_05669458.1| DNA binding protein HU [Enterococcus faecium 1,231,410]
 gi|257892258|ref|ZP_05671911.1| DNA binding protein HU [Enterococcus faecium 1,231,408]
 gi|257896209|ref|ZP_05675862.1| DNA binding protein HU [Enterococcus faecium Com12]
 gi|257898847|ref|ZP_05678500.1| DNA binding protein HU [Enterococcus faecium Com15]
 gi|258616517|ref|ZP_05714287.1| DNA-binding protein HU [Enterococcus faecium DO]
 gi|260559047|ref|ZP_05831233.1| DNA binding protein HU [Enterococcus faecium C68]
 gi|261207581|ref|ZP_05922266.1| DNA binding protein HU [Enterococcus faecium TC 6]
 gi|289565093|ref|ZP_06445546.1| DNA-binding protein HU 1 [Enterococcus faecium D344SRF]
 gi|293379549|ref|ZP_06625691.1| DNA-binding protein HU [Enterococcus faecium PC4.1]
 gi|293556740|ref|ZP_06675303.1| DNA-binding protein HU [Enterococcus faecium E1039]
 gi|293563398|ref|ZP_06677847.1| DNA-binding protein HU 1 [Enterococcus faecium E1162]
 gi|293568056|ref|ZP_06679394.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Enterococcus faecium E1071]
 gi|293570250|ref|ZP_06681319.1| DNA-binding protein HU 1 [Enterococcus faecium E980]
 gi|294614845|ref|ZP_06694740.1| DNA-binding protein HU 1 [Enterococcus faecium E1636]
 gi|294618676|ref|ZP_06698210.1| DNA-binding protein HU 1 [Enterococcus faecium E1679]
 gi|294621938|ref|ZP_06701086.1| DNA-binding protein HU 1 [Enterococcus faecium U0317]
 gi|314938009|ref|ZP_07845319.1| DNA-binding protein HU [Enterococcus faecium TX0133a04]
 gi|314942005|ref|ZP_07848866.1| DNA-binding protein HU [Enterococcus faecium TX0133C]
 gi|314948742|ref|ZP_07852114.1| DNA-binding protein HU [Enterococcus faecium TX0082]
 gi|314951760|ref|ZP_07854799.1| DNA-binding protein HU [Enterococcus faecium TX0133A]
 gi|314991833|ref|ZP_07857291.1| DNA-binding protein HU [Enterococcus faecium TX0133B]
 gi|314995874|ref|ZP_07860961.1| DNA-binding protein HU [Enterococcus faecium TX0133a01]
 gi|227179729|gb|EEI60701.1| DNA-binding protein II [Enterococcus faecium TX1330]
 gi|257812224|gb|EEV40982.1| DNA binding protein HU [Enterococcus faecium 1,230,933]
 gi|257816875|gb|EEV44203.1| DNA binding protein HU [Enterococcus faecium 1,231,502]
 gi|257820719|gb|EEV47867.1| DNA binding protein HU [Enterococcus faecium 1,231,501]
 gi|257823769|gb|EEV50701.1| DNA binding protein HU [Enterococcus faecium 1,141,733]
 gi|257826165|gb|EEV52791.1| DNA binding protein HU [Enterococcus faecium 1,231,410]
 gi|257828637|gb|EEV55244.1| DNA binding protein HU [Enterococcus faecium 1,231,408]
 gi|257832774|gb|EEV59195.1| DNA binding protein HU [Enterococcus faecium Com12]
 gi|257836759|gb|EEV61833.1| DNA binding protein HU [Enterococcus faecium Com15]
 gi|260074804|gb|EEW63120.1| DNA binding protein HU [Enterococcus faecium C68]
 gi|260077964|gb|EEW65670.1| DNA binding protein HU [Enterococcus faecium TC 6]
 gi|289163100|gb|EFD10947.1| DNA-binding protein HU 1 [Enterococcus faecium D344SRF]
 gi|291589277|gb|EFF21087.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Enterococcus faecium E1071]
 gi|291592307|gb|EFF23921.1| DNA-binding protein HU 1 [Enterococcus faecium E1636]
 gi|291595059|gb|EFF26402.1| DNA-binding protein HU 1 [Enterococcus faecium E1679]
 gi|291598487|gb|EFF29556.1| DNA-binding protein HU 1 [Enterococcus faecium U0317]
 gi|291601072|gb|EFF31361.1| DNA-binding protein HU [Enterococcus faecium E1039]
 gi|291604659|gb|EFF34144.1| DNA-binding protein HU 1 [Enterococcus faecium E1162]
 gi|291609657|gb|EFF38918.1| DNA-binding protein HU 1 [Enterococcus faecium E980]
 gi|292641858|gb|EFF60026.1| DNA-binding protein HU [Enterococcus faecium PC4.1]
 gi|313589978|gb|EFR68823.1| DNA-binding protein HU [Enterococcus faecium TX0133a01]
 gi|313593644|gb|EFR72489.1| DNA-binding protein HU [Enterococcus faecium TX0133B]
 gi|313596039|gb|EFR74884.1| DNA-binding protein HU [Enterococcus faecium TX0133A]
 gi|313599257|gb|EFR78102.1| DNA-binding protein HU [Enterococcus faecium TX0133C]
 gi|313642584|gb|EFS07164.1| DNA-binding protein HU [Enterococcus faecium TX0133a04]
 gi|313644808|gb|EFS09388.1| DNA-binding protein HU [Enterococcus faecium TX0082]
          Length = 91

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 52/87 (59%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++L++ ++    L++KD+T  V  +F+ I D+   GE +++  F  F V+++ +R GRN
Sbjct: 4  KAELIEKVASATDLTKKDATAAVDAVFSTIQDALANGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT +E++I   +V  FK    LK  +
Sbjct: 64 PQTGEEIEIPASKVPAFKPGKALKDAV 90


>gi|167754539|ref|ZP_02426666.1| hypothetical protein CLORAM_00041 [Clostridium ramosum DSM 1402]
 gi|167705371|gb|EDS19950.1| hypothetical protein CLORAM_00041 [Clostridium ramosum DSM 1402]
          Length = 94

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 54/90 (60%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M   + + +LV+++SKE  L++KD+   V T+FN I  S V G+ + IS F TF V  + 
Sbjct: 1  MEVVMNKKELVETVSKERNLTKKDAEILVDTVFNTITRSVVEGDKVLISGFGTFKVNDRK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          +R G + +T +E+ I   + V FK S+ LK
Sbjct: 61 ARKGISPKTQEEMVIPASKTVTFKPSNRLK 90


>gi|59800752|ref|YP_207464.1| IfhA [Neisseria gonorrhoeae FA 1090]
 gi|194098031|ref|YP_002001079.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          NCCP11945]
 gi|239998494|ref|ZP_04718418.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          35/02]
 gi|240013619|ref|ZP_04720532.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          DGI18]
 gi|240016058|ref|ZP_04722598.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          FA6140]
 gi|240080200|ref|ZP_04724743.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          FA19]
 gi|240112413|ref|ZP_04726903.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          MS11]
 gi|240115153|ref|ZP_04729215.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          PID18]
 gi|240117437|ref|ZP_04731499.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          PID1]
 gi|240120689|ref|ZP_04733651.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          PID24-1]
 gi|240122993|ref|ZP_04735949.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          PID332]
 gi|240125245|ref|ZP_04738131.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          SK-92-679]
 gi|240127699|ref|ZP_04740360.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          SK-93-1035]
 gi|254493213|ref|ZP_05106384.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          1291]
 gi|260441029|ref|ZP_05794845.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          DGI2]
 gi|268594353|ref|ZP_06128520.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          35/02]
 gi|268596349|ref|ZP_06130516.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          FA19]
 gi|268598476|ref|ZP_06132643.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          MS11]
 gi|268600829|ref|ZP_06134996.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          PID18]
 gi|268603134|ref|ZP_06137301.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          PID1]
 gi|268681615|ref|ZP_06148477.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          PID332]
 gi|268683843|ref|ZP_06150705.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          SK-92-679]
 gi|268686084|ref|ZP_06152946.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          SK-93-1035]
 gi|291044361|ref|ZP_06570070.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          DGI2]
 gi|293399547|ref|ZP_06643700.1| integration host factor, alpha subunit [Neisseria gonorrhoeae
          F62]
 gi|75507418|sp|Q5F9T5|IHFA_NEIG1 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709736|sp|B4RJZ4|IHFA_NEIG2 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|59717647|gb|AAW89052.1| integration host factor alpha subunit [Neisseria gonorrhoeae FA
          1090]
 gi|193933321|gb|ACF29145.1| IfhA [Neisseria gonorrhoeae NCCP11945]
 gi|226512253|gb|EEH61598.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          1291]
 gi|268547742|gb|EEZ43160.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          35/02]
 gi|268550137|gb|EEZ45156.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          FA19]
 gi|268582607|gb|EEZ47283.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          MS11]
 gi|268584960|gb|EEZ49636.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          PID18]
 gi|268587265|gb|EEZ51941.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          PID1]
 gi|268621899|gb|EEZ54299.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          PID332]
 gi|268624127|gb|EEZ56527.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          SK-92-679]
 gi|268626368|gb|EEZ58768.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          SK-93-1035]
 gi|291011255|gb|EFE03251.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          DGI2]
 gi|291610116|gb|EFF39238.1| integration host factor, alpha subunit [Neisseria gonorrhoeae
          F62]
 gi|317163772|gb|ADV07313.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          TCDC-NG08107]
          Length = 100

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 4  TITRSDLVK-SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T+T+++L    + K   +++ D+   V   F EI  +   GE IKIS F  F ++ K  R
Sbjct: 2  TLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN +T +EV I  RRVV F AS  LK
Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLK 89


>gi|218289480|ref|ZP_03493708.1| histone family protein DNA-binding protein [Alicyclobacillus
          acidocaldarius LAA1]
 gi|218240348|gb|EED07530.1| histone family protein DNA-binding protein [Alicyclobacillus
          acidocaldarius LAA1]
          Length = 91

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL++  +++ GLS+KD    +  LF+ I  +   GE ++I  F TF ++++ +R  
Sbjct: 1  MNKRDLIRKTAEQTGLSQKDCEAVINALFDTIRKTVESGEKVQIIGFGTFELRERAARTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + V++  RRV  FK  + LK+ +
Sbjct: 61 RNPRTGEAVEVPARRVPAFKPGAELKQAV 89


>gi|325571136|ref|ZP_08146708.1| DNA-binding protein HU [Enterococcus casseliflavus ATCC 12755]
 gi|325156221|gb|EGC68407.1| DNA-binding protein HU [Enterococcus casseliflavus ATCC 12755]
          Length = 103

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 49/84 (58%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++L++ ++    L++KD+T  V  +F+ I D+   GE +++  F  F V+ +  R GRN
Sbjct: 16 KAELIEKVAAATDLTKKDATAAVDAVFSTIQDALANGEKVQLIGFGNFEVRSRAERKGRN 75

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E+KI   +V  FK    LK
Sbjct: 76 PQTGEEIKIPASKVPAFKPGKALK 99


>gi|84515231|ref|ZP_01002593.1| integration host factor beta subunit [Loktanella vestfoldensis
          SKA53]
 gi|84510514|gb|EAQ06969.1| integration host factor beta subunit [Loktanella vestfoldensis
          SKA53]
          Length = 93

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ E   L ++D  + V T+F+ I D+  +G  +++  F  F VK++  R+
Sbjct: 1  MIRSELIQKIADENPHLYQRDVEKIVNTIFDRITDAMAQGNRVELRGFGAFSVKKRDPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V++D + V  FK   +L+ R+
Sbjct: 61 GRNPRTGEAVEVDEKHVPFFKTGKLLRDRL 90


>gi|15676627|ref|NP_273771.1| integration host factor, alpha subunit [Neisseria meningitidis
          MC58]
 gi|121634526|ref|YP_974771.1| putative integration host factor alpha-subunit [Neisseria
          meningitidis FAM18]
 gi|161869670|ref|YP_001598837.1| integration host factor subunit alpha [Neisseria meningitidis
          053442]
 gi|218767850|ref|YP_002342362.1| integration host factor subunit alpha [Neisseria meningitidis
          Z2491]
 gi|254804610|ref|YP_003082831.1| integration host factor alpha-subunit [Neisseria meningitidis
          alpha14]
 gi|304387969|ref|ZP_07370141.1| integration host factor [Neisseria meningitidis ATCC 13091]
 gi|54037413|sp|P64393|IHFA_NEIMB RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|54041368|sp|P64392|IHFA_NEIMA RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|166918511|sp|A1KSZ1|IHFA_NEIMF RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|189044703|sp|A9M383|IHFA_NEIM0 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|7225956|gb|AAF41142.1| integration host factor, alpha subunit [Neisseria meningitidis
          MC58]
 gi|120866232|emb|CAM09972.1| putative integration host factor alpha-subunit [Neisseria
          meningitidis FAM18]
 gi|121051858|emb|CAM08164.1| putative integration host factor alpha-subunit [Neisseria
          meningitidis Z2491]
 gi|161595223|gb|ABX72883.1| integration host factor alpha-subunit [Neisseria meningitidis
          053442]
 gi|254668152|emb|CBA04795.1| integration host factor alpha-subunit [Neisseria meningitidis
          alpha14]
 gi|254669798|emb|CBA04109.1| integration host factor alpha-subunit [Neisseria meningitidis
          alpha153]
 gi|261392903|emb|CAX50484.1| integration host factor alpha-subunit (IHF-alpha) [Neisseria
          meningitidis 8013]
 gi|304337968|gb|EFM04106.1| integration host factor [Neisseria meningitidis ATCC 13091]
 gi|308388919|gb|ADO31239.1| putative integration host factor alpha-subunit [Neisseria
          meningitidis alpha710]
 gi|316983711|gb|EFV62692.1| integration host factor, alpha subunit [Neisseria meningitidis
          H44/76]
 gi|319410097|emb|CBY90433.1| integration host factor alpha-subunit (IHF-alpha) [Neisseria
          meningitidis WUE 2594]
 gi|325127847|gb|EGC50754.1| integration host factor, alpha subunit [Neisseria meningitidis
          N1568]
 gi|325129888|gb|EGC52691.1| integration host factor, alpha subunit [Neisseria meningitidis
          OX99.30304]
 gi|325131817|gb|EGC54517.1| integration host factor, alpha subunit [Neisseria meningitidis
          M6190]
 gi|325133756|gb|EGC56412.1| integration host factor, alpha subunit [Neisseria meningitidis
          M13399]
 gi|325136047|gb|EGC58657.1| integration host factor, alpha subunit [Neisseria meningitidis
          M0579]
 gi|325137867|gb|EGC60442.1| integration host factor, alpha subunit [Neisseria meningitidis
          ES14902]
 gi|325140115|gb|EGC62644.1| integration host factor, alpha subunit [Neisseria meningitidis
          CU385]
 gi|325144067|gb|EGC66375.1| integration host factor, alpha subunit [Neisseria meningitidis
          M01-240013]
 gi|325197949|gb|ADY93405.1| integration host factor, alpha subunit [Neisseria meningitidis
          G2136]
 gi|325200586|gb|ADY96041.1| integration host factor, alpha subunit [Neisseria meningitidis
          H44/76]
 gi|325202474|gb|ADY97928.1| integration host factor, alpha subunit [Neisseria meningitidis
          M01-240149]
 gi|325203816|gb|ADY99269.1| integration host factor, alpha subunit [Neisseria meningitidis
          M01-240355]
 gi|325206428|gb|ADZ01881.1| integration host factor, alpha subunit [Neisseria meningitidis
          M04-240196]
 gi|325207774|gb|ADZ03226.1| integration host factor, alpha subunit [Neisseria meningitidis
          NZ-05/33]
          Length = 100

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 4  TITRSDLVK-SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T+T+++L    + K   +++ D+   V   F EI  +   GE IKIS F  F ++ K  R
Sbjct: 2  TLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN +T +EV I  RRVV F AS  LK
Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLK 89


>gi|332637851|ref|ZP_08416714.1| DNA-binding protein HU [Weissella cibaria KACC 11862]
          Length = 91

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +LV  ++   GL++KD+T  V  +F  I D+  +G+ +++  F  F V+ + +R GRN
Sbjct: 4  KQELVNDVATTTGLTKKDATAAVDAVFASIQDTLAKGDKVQLIGFGNFEVRTRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT +E++I   ++  FK    LK  I
Sbjct: 64 PQTGEEIEIAASKIPAFKPGKALKDAI 90


>gi|229017681|ref|ZP_04174572.1| DNA-binding protein HU 1 [Bacillus cereus AH1273]
 gi|229023899|ref|ZP_04180382.1| DNA-binding protein HU 1 [Bacillus cereus AH1272]
 gi|229173057|ref|ZP_04300608.1| DNA-binding protein HU 1 [Bacillus cereus MM3]
 gi|228610390|gb|EEK67661.1| DNA-binding protein HU 1 [Bacillus cereus MM3]
 gi|228737412|gb|EEL87924.1| DNA-binding protein HU 1 [Bacillus cereus AH1272]
 gi|228743607|gb|EEL93716.1| DNA-binding protein HU 1 [Bacillus cereus AH1273]
          Length = 90

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 58/89 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LVK++++   +S+K+++  V ++F+ I  +   G+ +++  F TF V+++ +R G
Sbjct: 1  MNKTELVKNVAQSADISQKEASAAVQSVFDTIATALQSGDKVQLIGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FKA   LK+ +
Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAV 89


>gi|223043293|ref|ZP_03613340.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Staphylococcus capitis SK14]
 gi|314933655|ref|ZP_07841020.1| DNA-binding protein HU [Staphylococcus caprae C87]
 gi|222443504|gb|EEE49602.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Staphylococcus capitis SK14]
 gi|313653805|gb|EFS17562.1| DNA-binding protein HU [Staphylococcus caprae C87]
          Length = 90

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 52/86 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++  L++K++   V  +F  I  S  +GE +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQKSLAKGEKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+ I   +V  FKA   LK
Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALK 86


>gi|229918705|ref|YP_002887351.1| histone family protein DNA-binding protein [Exiguobacterium sp.
          AT1b]
 gi|229470134|gb|ACQ71906.1| histone family protein DNA-binding protein [Exiguobacterium sp.
          AT1b]
          Length = 90

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 56/86 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+++++++  +S+K++T+ V   F  I ++   GE I++  F TF V+++ +R G
Sbjct: 1  MNKTELIQAVTEKADVSKKEATKIVEATFESITEALQNGEKIQLIGFGTFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T ++++I   +V  FKA   LK
Sbjct: 61 RNPRTKEDIEIPASKVPAFKAGKALK 86


>gi|87312362|ref|ZP_01094454.1| probable DNA-binding protein HU [Blastopirellula marina DSM 3645]
 gi|87284927|gb|EAQ76869.1| probable DNA-binding protein HU [Blastopirellula marina DSM 3645]
          Length = 159

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 56/92 (60%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S+ +T+ ++VK+IS+E GL++  +   V   FN I D+ V    I++ +F  F VK++ +
Sbjct: 17  SRVVTKKEIVKTISEEIGLTQLKTKEIVQKTFNAIVDTLVEDGRIELRNFGVFEVKKRAA 76

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R  RN +T ++V +  + VV FK    +++R+
Sbjct: 77  RKARNPRTGEKVYVPSKFVVTFKPGKEMEERV 108


>gi|307709231|ref|ZP_07645690.1| DNA-binding protein [Streptococcus mitis SK564]
 gi|307620177|gb|EFN99294.1| DNA-binding protein [Streptococcus mitis SK564]
          Length = 91

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F+ + D    GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVEAVFSAVADYLAAGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E+ I   +V  FKA   LK
Sbjct: 64 PQTGKEITIAASKVPAFKAGKALK 87


>gi|194333137|ref|YP_002014997.1| histone family protein DNA-binding protein [Prosthecochloris
          aestuarii DSM 271]
 gi|194310955|gb|ACF45350.1| histone family protein DNA-binding protein [Prosthecochloris
          aestuarii DSM 271]
          Length = 94

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++++LV+ I+ + GL++ D+ R V +  + + DS   GE + +  F TF V ++  R G
Sbjct: 4  MSKAELVEKIASQAGLTKADAERAVNSFVSVVTDSLKAGEDVTLVGFGTFSVGERAERQG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I  R+ V FK    LK+ +
Sbjct: 64 RNPQTGETITIAARKAVKFKPGKALKEEV 92


>gi|292490922|ref|YP_003526361.1| histone family protein DNA-binding protein [Nitrosococcus
          halophilus Nc4]
 gi|291579517|gb|ADE13974.1| histone family protein DNA-binding protein [Nitrosococcus
          halophilus Nc4]
          Length = 90

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++S+++   L++  + R V ++   + D+  RG+ + I  F TF V+ + +R G
Sbjct: 1  MNKSELIESVAESGDLTKAAAARAVDSVIEAVTDALRRGDQVTIVGFGTFSVRDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI   ++  FKA   LK  +
Sbjct: 61 RNPQTGEEIKIKASKIPSFKAGKALKDAV 89


>gi|78224250|ref|YP_385997.1| histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
 gi|78195505|gb|ABB33272.1| Histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
          Length = 97

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DL   I +     +K++   V  +   + D+      +KIS F  F V+QK  R G
Sbjct: 1  MTKADLADKIQERISCQKKEAVELVELVMESLKDAIATEGLVKISGFGNFVVRQKTDRAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I  R+V+ FK S ILK RI
Sbjct: 61 RNPQTGETITISSRKVLTFKPSVILKNRI 89


>gi|294787803|ref|ZP_06753047.1| integration host factor, alpha subunit [Simonsiella muelleri ATCC
          29453]
 gi|294484096|gb|EFG31779.1| integration host factor, alpha subunit [Simonsiella muelleri ATCC
          29453]
          Length = 100

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 4  TITRSDLVK-SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T+T+++L    + K   +S+ D+   V   F EI  +   GE IKIS F  F ++ K  R
Sbjct: 2  TLTKAELADILVEKVSSVSKNDAKEIVELFFEEIRTTLESGEEIKISGFGNFQLRDKPQR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN +T +EV I  RRVV F AS  LK
Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLK 89


>gi|259046865|ref|ZP_05737266.1| DNA-binding protein HU [Granulicatella adiacens ATCC 49175]
 gi|259036488|gb|EEW37743.1| DNA-binding protein HU [Granulicatella adiacens ATCC 49175]
          Length = 92

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV  ++K+  L++KD +  V  LF  I ++   GE +++  F  F V+++ +R GRN
Sbjct: 4  KAELVDRVAKKTQLTKKDVSATVEALFETIQEALKAGEKVQVIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E+KI   +V  FKA   LK
Sbjct: 64 PQTGKEIKIKASKVPAFKAGKALK 87


>gi|257867662|ref|ZP_05647315.1| DNA binding protein HU [Enterococcus casseliflavus EC30]
 gi|257869557|ref|ZP_05649210.1| DNA binding protein HU [Enterococcus gallinarum EG2]
 gi|257873990|ref|ZP_05653643.1| DNA binding protein HU [Enterococcus casseliflavus EC10]
 gi|257876569|ref|ZP_05656222.1| DNA binding protein HU [Enterococcus casseliflavus EC20]
 gi|257801745|gb|EEV30648.1| DNA binding protein HU [Enterococcus casseliflavus EC30]
 gi|257803721|gb|EEV32543.1| DNA binding protein HU [Enterococcus gallinarum EG2]
 gi|257808154|gb|EEV36976.1| DNA binding protein HU [Enterococcus casseliflavus EC10]
 gi|257810735|gb|EEV39555.1| DNA binding protein HU [Enterococcus casseliflavus EC20]
          Length = 91

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++L++ ++    L++KD+T  V  +F+ I D+   GE +++  F  F V+ +  R GRN
Sbjct: 4  KAELIEKVAAATDLTKKDATAAVDAVFSTIQDALANGEKVQLIGFGNFEVRSRAERKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT +E+KI   +V  FK    LK  +
Sbjct: 64 PQTGEEIKIPASKVPAFKPGKALKDAV 90


>gi|226944153|ref|YP_002799226.1| integration host factor subunit alpha [Azotobacter vinelandii DJ]
 gi|226719080|gb|ACO78251.1| integration host factor, alpha subunit [Azotobacter vinelandii
          DJ]
          Length = 92

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          + + + +E GL+++++   V   F EI  +    E +K+S F  F ++ K  R GRN +T
Sbjct: 1  MAERLYEELGLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQRPGRNPKT 60

Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93
           +E+ I  RRVV F+    LK R+
Sbjct: 61 GEEIPITARRVVTFRPGQKLKARV 84


>gi|114770171|ref|ZP_01447709.1| integration host factor beta subunit [alpha proteobacterium
          HTCC2255]
 gi|114549008|gb|EAU51891.1| integration host factor beta subunit [alpha proteobacterium
          HTCC2255]
          Length = 93

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+LV+ I+ E   L ++D  R + T+F+EI D+   G  +++  F +F VKQ+ +R 
Sbjct: 1  MIRSELVEKIAAENPHLFQRDIERIIGTVFDEIIDAMSNGNRVELRGFGSFSVKQREARR 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V ++ + V  FK   +L+ R+ D
Sbjct: 61 GRNPRTGETVDVEEKHVPFFKTGKLLRDRLND 92


>gi|253576875|ref|ZP_04854200.1| histone family protein DNA-binding protein [Paenibacillus sp.
          oral taxon 786 str. D14]
 gi|251843742|gb|EES71765.1| histone family protein DNA-binding protein [Paenibacillus sp.
          oral taxon 786 str. D14]
          Length = 90

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +IS + GL++KD    +     EI D+   G+ +++  F TF  +++  R G
Sbjct: 1  MNKTDLINNISSKSGLTKKDVESVLNGFLGEITDALASGDKVQLIGFGTFETRKRSGRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I    V  FKA + LK+ +
Sbjct: 61 RNPQTGKTIEIPASTVPAFKAGNKLKEAV 89


>gi|170726421|ref|YP_001760447.1| integration host factor subunit alpha [Shewanella woodyi ATCC
          51908]
 gi|226709754|sp|B1KRE5|IHFA_SHEWM RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|169811768|gb|ACA86352.1| integration host factor, alpha subunit [Shewanella woodyi ATCC
          51908]
          Length = 97

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 52/92 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +  G++++ +   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAEHLFETLGINKRVAKEMVEAFFEEIRQALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKSRVEE 93


>gi|145298939|ref|YP_001141780.1| integration host factor alpha-subunit [Aeromonas salmonicida
          subsp. salmonicida A449]
 gi|142851711|gb|ABO90032.1| integration host factor alpha-subunit [Aeromonas salmonicida
          subsp. salmonicida A449]
          Length = 81

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
          +S++++   V   F EI  +  RGE +KIS F  F +++K  R GRN +T +++ I  RR
Sbjct: 1  MSKREAKDMVEAFFEEIRQALERGEQVKISGFGNFDLREKNQRPGRNPKTGEDIPISARR 60

Query: 80 VVVFKASSILKKRI 93
          VV F+    LK R+
Sbjct: 61 VVTFRPGQKLKARV 74


>gi|291460214|ref|ZP_06599604.1| DNA-binding protein HU [Oribacterium sp. oral taxon 078 str.
          F0262]
 gi|291417161|gb|EFE90880.1| DNA-binding protein HU [Oribacterium sp. oral taxon 078 str.
          F0262]
          Length = 95

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R DLV +++K+  LS+KD+   V  +F+ I +S  + E +++  F TF V ++ +R G
Sbjct: 6  MNRMDLVAAVAKKAELSKKDAEAAVKAVFDSISESLEKDEKVQLIGFGTFEVSKRAAREG 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + +KI   +   FKA   LK RI
Sbjct: 66 RNPRTGETMKIAESKAPRFKAGKALKDRI 94


>gi|117920310|ref|YP_869502.1| integration host factor subunit alpha [Shewanella sp. ANA-3]
 gi|166918528|sp|A0KWC7|IHFA_SHESA RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|117612642|gb|ABK48096.1| integration host factor, alpha subunit [Shewanella sp. ANA-3]
          Length = 98

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +  G++++ +   V + F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAEHLFETLGINKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRV 91


>gi|113970148|ref|YP_733941.1| integration host factor subunit alpha [Shewanella sp. MR-4]
 gi|114047662|ref|YP_738212.1| integration host factor subunit alpha [Shewanella sp. MR-7]
 gi|123029698|sp|Q0HJ83|IHFA_SHESM RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123030574|sp|Q0HUQ0|IHFA_SHESR RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|113884832|gb|ABI38884.1| integration host factor, alpha subunit [Shewanella sp. MR-4]
 gi|113889104|gb|ABI43155.1| integration host factor, alpha subunit [Shewanella sp. MR-7]
          Length = 98

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +  G++++ +   V + F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAEHLFETLGINKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRV 91


>gi|78222088|ref|YP_383835.1| histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
 gi|78193343|gb|ABB31110.1| Histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
          Length = 95

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV+ ++ K   L+RKDS   V  +F+ I D+  RGE ++I  F +F V+++G+R 
Sbjct: 1  MTKSELVEQLAEKNTWLTRKDSEMIVNLVFDSISDALKRGEKVEIRGFGSFTVRERGARE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN ++   VKI  ++   FK    L++R+
Sbjct: 61 ARNPKSGDVVKIPAKKTPFFKTGKELRERV 90


>gi|332525932|ref|ZP_08402073.1| integration host factor alpha-subunit [Rubrivivax benzoatilyticus
           JA2]
 gi|332109483|gb|EGJ10406.1| integration host factor alpha-subunit [Rubrivivax benzoatilyticus
           JA2]
          Length = 119

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 53/95 (55%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L   +    GL++++S   V   F  +  + V G+ +K+S F  F++++K  
Sbjct: 17  TPTLTKAELADLLFDRLGLNKRESKDMVEAFFEIVHGTLVEGDDVKLSGFGNFNIRRKAP 76

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  R VV F AS  LK  +  D
Sbjct: 77  RPGRNPRTGELIPIKARNVVTFHASHKLKAIVQGD 111


>gi|225851130|ref|YP_002731364.1| histone family protein DNA-binding protein [Persephonella marina
          EX-H1]
 gi|225645754|gb|ACO03940.1| histone family protein DNA-binding protein [Persephonella marina
          EX-H1]
          Length = 90

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  ++ E G+++  + R V      + ++  +GE + +     F+VK++ +R G
Sbjct: 1  MTKAELVAKVAAEAGVTKASAERCVNAFVKALTEALEKGERVALPGLGVFNVKERKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E+ I  R+VV F A+  LK+++
Sbjct: 61 RNPRTGEEITIPARKVVTFHAAKALKEKV 89


>gi|261403920|ref|YP_003240161.1| histone family protein DNA-binding protein [Paenibacillus sp.
          Y412MC10]
 gi|329925507|ref|ZP_08280381.1| DNA-binding protein HU-alpha [Paenibacillus sp. HGF5]
 gi|261280383|gb|ACX62354.1| histone family protein DNA-binding protein [Paenibacillus sp.
          Y412MC10]
 gi|328939790|gb|EGG36130.1| DNA-binding protein HU-alpha [Paenibacillus sp. HGF5]
          Length = 90

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +IS + GL++KD    +     EI ++   G+ +++  F TF  +++  R G
Sbjct: 1  MNKTDLINNISGKSGLTKKDVENVLNGFLGEITEALANGDKVQLIGFGTFETRKRAGRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I    V  FKA + LK+ +
Sbjct: 61 RNPQTGNTIEIPESNVPAFKAGNKLKEAV 89


>gi|167750745|ref|ZP_02422872.1| hypothetical protein EUBSIR_01723 [Eubacterium siraeum DSM 15702]
 gi|167656180|gb|EDS00310.1| hypothetical protein EUBSIR_01723 [Eubacterium siraeum DSM 15702]
          Length = 105

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 55/86 (63%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+++LV  ++++  L++KD+ + ++ L   I ++  +GE I++  F TF V+++ +R G
Sbjct: 15  MTKAELVTMVAEKADLTKKDAEKAISALVESISETLAKGEKIQLVGFGTFEVRERAAREG 74

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILK 90
            N +T  ++KI   +V  FKA S LK
Sbjct: 75  VNPRTGDKIKIAASKVPAFKAGSALK 100


>gi|317128573|ref|YP_004094855.1| histone family protein DNA-binding protein [Bacillus
          cellulosilyticus DSM 2522]
 gi|315473521|gb|ADU30124.1| histone family protein DNA-binding protein [Bacillus
          cellulosilyticus DSM 2522]
          Length = 90

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  LS+KD+T  V  +F+ I  S   GE +++  F  F V+++ +R G
Sbjct: 1  MNKTELINAVAEKSDLSKKDATSAVDAVFDVITGSLQNGEKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I    V  FK    LK  +
Sbjct: 61 RNPQTGEEIEIPASNVPAFKPGKALKDAV 89


>gi|24373647|ref|NP_717690.1| integration host factor, alpha subunit [Shewanella oneidensis
          MR-1]
 gi|81744784|sp|Q8EF98|IHFA_SHEON RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|24347991|gb|AAN55134.1|AE015650_4 integration host factor, alpha subunit [Shewanella oneidensis
          MR-1]
          Length = 98

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +  G++++ +   V + F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAEHLFETLGINKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRV 91


>gi|241896283|ref|ZP_04783579.1| DNA-binding protein HU [Weissella paramesenteroides ATCC 33313]
 gi|241870524|gb|EER74275.1| DNA-binding protein HU [Weissella paramesenteroides ATCC 33313]
          Length = 91

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +LV  ++   GL++KD+T  V  +F  I ++  +GE +++  F  F V+ + +R GRN
Sbjct: 4  KQELVTDVATATGLTKKDATAAVDAVFASIQETLAKGEKVQLIGFGNFEVRSRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT +E++I   ++  FK    LK  I
Sbjct: 64 PQTGEEIEIAASKIPAFKPGKALKDAI 90


>gi|313499440|gb|ADR60806.1| IhfA [Pseudomonas putida BIRD-1]
          Length = 92

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          + + + +E GL+++++   V   F EI  +    E +K+S F  F ++ K  R GRN +T
Sbjct: 1  MAERLYEELGLNKREAKELVELFFEEIRHALEENEQVKLSGFGNFDLRDKRQRPGRNPKT 60

Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93
           +E+ I  RRVV F+    LK R+
Sbjct: 61 GEEIPITARRVVTFRPGQKLKARV 84


>gi|296112017|ref|YP_003622399.1| DNA-binding protein II [Leuconostoc kimchii IMSNU 11154]
 gi|300173423|ref|YP_003772589.1| DNA-binding protein HU [Leuconostoc gasicomitatum LMG 18811]
 gi|295833549|gb|ADG41430.1| DNA-binding protein II [Leuconostoc kimchii IMSNU 11154]
 gi|299887802|emb|CBL91770.1| DNA-binding protein HU [Leuconostoc gasicomitatum LMG 18811]
          Length = 91

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 50/87 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +LV S++K  GL++KD+T  V  +F  I  +   GE +++  F  F V+ + +R GRN
Sbjct: 4  KQELVDSVAKATGLTKKDATASVDAVFASIEAALKNGEKVQLIGFGNFEVRDRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT  E++I   +V  FK    LK+ +
Sbjct: 64 PQTGAEIEIPASKVPAFKPGKALKEAV 90


>gi|85705352|ref|ZP_01036451.1| integration host factor, beta subunit [Roseovarius sp. 217]
 gi|85670225|gb|EAQ25087.1| integration host factor, beta subunit [Roseovarius sp. 217]
          Length = 93

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ E   L ++D  R V T+FN I D+   G  +++  F  F VK++ +R 
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTIFNAITDALAEGNRVELRGFGAFSVKKRDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGESVHVEEKYVPFFKTGKLLRDRL 90


>gi|23016137|ref|ZP_00055896.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magnetotacticum MS-1]
          Length = 99

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 3  KTITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          K++T+S+L+  +++    L ++D  R VTT+F+EI  +  RG+ +++  F  F VK++  
Sbjct: 2  KSMTKSELIARLAEANPHLYQRDVERIVTTIFDEIASALARGDRVELRGFGAFSVKKRDP 61

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R GRN +T + V +D + V  FK    L++++
Sbjct: 62 RTGRNPRTGETVSVDGKAVPFFKTGKQLREKL 93


>gi|228949928|ref|ZP_04112122.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|229060100|ref|ZP_04197470.1| DNA-binding protein HU [Bacillus cereus AH603]
 gi|229082875|ref|ZP_04215299.1| DNA-binding protein HU [Bacillus cereus Rock4-2]
 gi|228700413|gb|EEL52975.1| DNA-binding protein HU [Bacillus cereus Rock4-2]
 gi|228719140|gb|EEL70750.1| DNA-binding protein HU [Bacillus cereus AH603]
 gi|228809749|gb|EEM56176.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
          Length = 93

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K ++++  L++KD+      L + I ++   GE ++I  F TF V+++ +R G
Sbjct: 4  MNKTELTKVVAEKAELTQKDAAAATQALLDTITNALANGEKVQILGFGTFEVRERSARTG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +   FKA   LK+ +
Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKELKEAV 92


>gi|218280828|ref|ZP_03487461.1| hypothetical protein EUBIFOR_00019 [Eubacterium biforme DSM 3989]
 gi|218217859|gb|EEC91397.1| hypothetical protein EUBIFOR_00019 [Eubacterium biforme DSM 3989]
          Length = 94

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 53/93 (56%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS  I + DL + +++EFG S+KD+T +V  +F+ + D+      + +  F  F + ++ 
Sbjct: 1  MSNVINKKDLAEKLAEEFGCSKKDATAYVQFVFDTVADTLKDNGTVDVFGFGKFSISERA 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +R G N  T ++++I   + V FKAS  LK  +
Sbjct: 61 ARTGINPATKEKIEIAASKSVKFKASKALKDAV 93


>gi|198283417|ref|YP_002219738.1| histone family protein DNA-binding protein [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|198247938|gb|ACH83531.1| histone family protein DNA-binding protein [Acidithiobacillus
          ferrooxidans ATCC 53993]
          Length = 107

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+ DL   + +  G +   + +FV   F  +  + +    +K+S F  F V+ K SR 
Sbjct: 2  TITKKDLANHLWEVGGWTHPQAEQFVDAFFEHMRAAIITESELKLSGFGRFTVRAKSSRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T Q  +I  RRVV F AS++L+ +
Sbjct: 62 GRNPKTGQPYEIKARRVVTFSASALLRAK 90


>gi|319892463|ref|YP_004149338.1| DNA-binding protein HBsu [Staphylococcus pseudintermedius
          HKU10-03]
 gi|317162159|gb|ADV05702.1| DNA-binding protein HBsu [Staphylococcus pseudintermedius
          HKU10-03]
 gi|323464434|gb|ADX76587.1| DNA-binding protein HU [Staphylococcus pseudintermedius ED99]
          Length = 90

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 52/86 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++  L++K++   V  +F  I  S  +GE +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAEQADLTKKEAGLAVDAVFEAIQTSLAKGEKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+ I   +V  FKA   LK
Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALK 86


>gi|262276275|ref|ZP_06054084.1| DNA-binding protein HU-beta [Grimontia hollisae CIP 101886]
 gi|262220083|gb|EEY71399.1| DNA-binding protein HU-beta [Grimontia hollisae CIP 101886]
          Length = 93

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 48/88 (54%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K + +S L+  I++   LS+  + R +  L   + DS   GE + +  F TF V+++ +R
Sbjct: 2  KKVNKSQLIDKIAENADLSKAAAGRALDALIEAVSDSLKEGEQVALVGFGTFSVRERSAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN QT  E+KI   +V  FKA   LK
Sbjct: 62 TGRNPQTGAEIKIAAAKVPGFKAGKALK 89


>gi|163793688|ref|ZP_02187662.1| Bacterial nucleoid DNA-binding protein [alpha proteobacterium
          BAL199]
 gi|159180799|gb|EDP65316.1| Bacterial nucleoid DNA-binding protein [alpha proteobacterium
          BAL199]
          Length = 92

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  +++    L ++D  R V+T+F+EI ++  RG+ +++  F  F VKQ+ +RV
Sbjct: 1  MTKSELIARLAEANPHLFQRDVERIVSTIFDEISNALARGDRVELRGFGAFSVKQREARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + VK+  + V  FK   +L+ ++
Sbjct: 61 GRNPRTGEAVKVSSKFVPFFKTGKLLRDKL 90


>gi|283769425|ref|ZP_06342323.1| DNA-binding protein HU [Bulleidia extructa W1219]
 gi|283103950|gb|EFC05335.1| DNA-binding protein HU [Bulleidia extructa W1219]
          Length = 96

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 53/90 (58%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T+  L + I+ E+ +S+KD+   V  +F++I  +  +GE + I+ F  F V +K 
Sbjct: 1  MAEQVTKKTLAEGIAAEYEVSKKDANELVNFVFDQITTAIKKGEEVSINGFGKFVVVEKA 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          +R G N  T +++KI   +   FKAS  LK
Sbjct: 61 AREGLNPATGEKIKIKASKAPKFKASKTLK 90


>gi|188997447|ref|YP_001931698.1| histone family protein DNA-binding protein [Sulfurihydrogenibium
          sp. YO3AOP1]
 gi|188932514|gb|ACD67144.1| histone family protein DNA-binding protein [Sulfurihydrogenibium
          sp. YO3AOP1]
          Length = 92

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+  ++++ GL + ++ R V      + ++  +GE   I     F+VK++ +R G
Sbjct: 1  MTKSELIAKVAEKAGLKKSEAERAVNVAIEALVEALSKGERTAIPGLGVFNVKERKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E+KI  R+VV F A+  LK+ +
Sbjct: 61 RNPRTGKEIKIPKRKVVAFTAAKSLKEAV 89


>gi|294676676|ref|YP_003577291.1| integration host factor subunit beta [Rhodobacter capsulatus SB
          1003]
 gi|547714|sp|Q06607|IHFB_RHOCA RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|294661|gb|AAA03551.1| HIP [Rhodobacter capsulatus]
 gi|294475496|gb|ADE84884.1| integration host factor, beta subunit [Rhodobacter capsulatus SB
          1003]
          Length = 95

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L+  I++E   L ++D  + V T+F EI ++  RG+ +++  F  F VK++ +R 
Sbjct: 1  MIRSELIAKIAEENPHLFQRDVEKIVNTIFEEIIEAMARGDRVELRGFGAFSVKKRDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +D + V  FK   +L+ R+
Sbjct: 61 GRNPRTGTSVAVDEKHVPFFKTGKLLRDRL 90


>gi|310642570|ref|YP_003947328.1| DNA-binding protein hu-alpha (histone-like protein)
          [Paenibacillus polymyxa SC2]
 gi|309247520|gb|ADO57087.1| DNA-binding protein HU-alpha (Histone-like protein)
          [Paenibacillus polymyxa SC2]
          Length = 91

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  +S+   LS+KD T+ +  +F  I  +   G+ +++  F  F V+++ +R G
Sbjct: 2  LNKTDLINQVSESTELSKKDVTKAIDAVFEAIAGALQNGDKVQLVGFGNFEVRERSARKG 61

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   ++  FK    LK  I
Sbjct: 62 RNPQTGEEIEIPASKIPAFKPGKALKDGI 90


>gi|15615918|ref|NP_244222.1| non-specific DNA-binding protein II (HB) (HU) [Bacillus
          halodurans C-125]
 gi|14194648|sp|Q9K7K5|DBH2_BACHD RecName: Full=DNA-binding protein HU-1
 gi|10175979|dbj|BAB07075.1| non-specific DNA-binding protein II (HB) (HU) [Bacillus
          halodurans C-125]
          Length = 90

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 53/86 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  +++   +S+KD+   V T+F+ I +S  +G+++++  F  F V+++ +R G
Sbjct: 1  MNKTELIHQVAERTQMSKKDAGEVVNTVFDVIAESLAQGDSVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+ I   +   FKA   LK
Sbjct: 61 RNPQTGEEIDIAATKTPAFKAGKQLK 86


>gi|229170488|ref|ZP_04298139.1| DNA-binding protein HU [Bacillus cereus AH621]
 gi|228612958|gb|EEK70132.1| DNA-binding protein HU [Bacillus cereus AH621]
          Length = 90

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K ++++  L++KD+      L + I ++   GE ++I  F TF V+++ +R G
Sbjct: 1  MNKTELTKVVAEKAELTQKDAAAATQALLDTITNALANGEKVQILGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +   FKA   LK+ +
Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELKEAV 89


>gi|307704962|ref|ZP_07641850.1| DNA-binding protein HU [Streptococcus mitis SK597]
 gi|307621472|gb|EFO00521.1| DNA-binding protein HU [Streptococcus mitis SK597]
          Length = 91

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F+ + D    GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVEAVFSAVTDYLAAGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E+ I   +V  FKA   LK
Sbjct: 64 PQTGKEITIAASKVPAFKAGKALK 87


>gi|260574086|ref|ZP_05842091.1| integration host factor, beta subunit [Rhodobacter sp. SW2]
 gi|259023552|gb|EEW26843.1| integration host factor, beta subunit [Rhodobacter sp. SW2]
          Length = 93

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ E   L+++   R V T+F EI ++  +G+ +++  F  F VK + +RV
Sbjct: 1  MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALAKGDRVELRGFGAFSVKARDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V+++ ++V  FK   +L+ R+
Sbjct: 61 GRNPRTGEAVEVEDKKVPFFKTGKLLRDRL 90


>gi|256828814|ref|YP_003157542.1| histone family protein DNA-binding protein [Desulfomicrobium
          baculatum DSM 4028]
 gi|256577990|gb|ACU89126.1| histone family protein DNA-binding protein [Desulfomicrobium
          baculatum DSM 4028]
          Length = 91

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 60/95 (63%), Gaps = 4/95 (4%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++S++++  +S  +++  V + F+ + D+ +RG+ I+I  F +F +KQ    +G
Sbjct: 1  MNKSELIQSLAEKIKISNDEASTIVDSFFDSMRDALLRGDRIEIRGFGSFKIKQYEGYIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          RN +T + V++ P+++  FKA     K ++D + G
Sbjct: 61 RNPKTGESVQVKPKKMPFFKAG----KGLLDYLNG 91


>gi|190571140|ref|YP_001975498.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
          quinquefasciatus Pel]
 gi|213018544|ref|ZP_03334352.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
          quinquefasciatus JHB]
 gi|190357412|emb|CAQ54846.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
          quinquefasciatus Pel]
 gi|212995495|gb|EEB56135.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
          quinquefasciatus JHB]
          Length = 99

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++ + + I++E GLS++DS   +  + +EI  S  +   +KISSF TF VK K  R 
Sbjct: 7  TVTKATIAECINQEIGLSKEDSIAIIDDILDEIKTSLAKDGIVKISSFGTFLVKNKKERP 66

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          G   +T++ V I  R+ + F+ S ++KK I
Sbjct: 67 GNIPKTSERVVIKARKSISFRPSKMMKKLI 96


>gi|91787670|ref|YP_548622.1| integration host factor subunit beta [Polaromonas sp. JS666]
 gi|91696895|gb|ABE43724.1| integration host factor, beta subunit [Polaromonas sp. JS666]
          Length = 104

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDLV+ ++  F  L+ +D+   V T+ + + D+ VRG  I+I  F +F + ++  R+
Sbjct: 1  MTRSDLVEELAARFSQLTHRDAEYAVKTILDAMSDALVRGHRIEIRGFGSFSINRRPPRM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V I  +RV  FK    L++ +
Sbjct: 61 GRNPRSGESVAIPEKRVPHFKPGKALREAV 90


>gi|84500257|ref|ZP_00998523.1| integration host factor beta subunit [Oceanicola batsensis
          HTCC2597]
 gi|84392191|gb|EAQ04459.1| integration host factor beta subunit [Oceanicola batsensis
          HTCC2597]
          Length = 94

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ E   L ++D  + V  +F+EI ++  RG+ +++  F  F VK++ +R 
Sbjct: 1  MIRSELIQKIADENPHLYQRDVEKIVNVIFDEIIEAMARGDRVELRGFGAFSVKKRDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V+++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGEAVEVEEKHVPFFKTGKLLRDRL 90


>gi|205373831|ref|ZP_03226633.1| hypothetical protein Bcoam_11505 [Bacillus coahuilensis m4-4]
          Length = 90

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 53/86 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   LS+KD+T+ V  +F  I ++   G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTELINAVAEATELSKKDATKAVDAVFESIQNALANGDKVQLIGFGNFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I   +V  FK    LK
Sbjct: 61 RNPQTGEEIEIAASKVPAFKPGKALK 86


>gi|117925344|ref|YP_865961.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
 gi|117926106|ref|YP_866723.1| nucleoid protein Hbs [Magnetococcus sp. MC-1]
 gi|117609100|gb|ABK44555.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
 gi|117609862|gb|ABK45317.1| bacterial nucleoid protein Hbs [Magnetococcus sp. MC-1]
          Length = 91

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 51/86 (59%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          ++L K++++  GLS+ ++ + +   F  + D+   G+ + IS F  F + ++ +R GRN 
Sbjct: 4  TELKKAVAESSGLSQANADKAIKATFAAMTDALKGGDGVSISGFGAFQIDERAARTGRNP 63

Query: 68 QTNQEVKIDPRRVVVFKASSILKKRI 93
          +T QE+KI   + V FKA  +LK  +
Sbjct: 64 KTGQEIKIAASKNVKFKAGKVLKDAV 89


>gi|225849331|ref|YP_002729495.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644673|gb|ACN99723.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 94

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+  ++++ GL + ++ R V      + ++  +GE   I     F+V+++ +R G
Sbjct: 1  MTKSELIAKVAEKAGLKKAEAERAVNAAIEAVVEALSKGERTAIPGLGVFNVRERKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E+KI  R+VV F A+  LK+ +
Sbjct: 61 RNPRTGKEIKIPARKVVAFTAAKSLKEAL 89


>gi|40062781|gb|AAR37675.1| DNA-binding protein HU [uncultured marine bacterium 439]
          Length = 90

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDLV +I+   GL++ D+ R ++     I  +   G+ + I+ F +F V+ + +R G
Sbjct: 1  MNKSDLVAAIADGSGLTKADAARALSATTGAISGALASGDKVSITGFGSFLVRSRAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   + I   +V  FKA  +LK+ +
Sbjct: 61 RNPQTGATIHISASKVPAFKAGKLLKESV 89


>gi|258513573|ref|YP_003189795.1| histone family protein DNA-binding protein [Desulfotomaculum
          acetoxidans DSM 771]
 gi|257777278|gb|ACV61172.1| histone family protein DNA-binding protein [Desulfotomaculum
          acetoxidans DSM 771]
          Length = 96

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ S+++E  L++KD+ + V  +   I  +  +GE +++  F TF +K + +R G
Sbjct: 1  MNKADLISSVAEEAELTKKDAEKAVNGVLKCIEMALAKGEKVQLVGFGTFDIKYRKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I+   V VFKA   L+  +
Sbjct: 61 RNPQTGEEIDIEAANVPVFKAGKDLRDAV 89


>gi|323340746|ref|ZP_08080998.1| DNA-binding protein HU [Lactobacillus ruminis ATCC 25644]
 gi|323091869|gb|EFZ34489.1| DNA-binding protein HU [Lactobacillus ruminis ATCC 25644]
          Length = 91

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 52/84 (61%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          ++ L+++++++ GL++KD+T  V  +F  I D   +G+ +++  F  F V+++ +R GRN
Sbjct: 4  KAQLIETVAEKTGLTKKDATVAVDAVFGSIQDFLEKGDKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT  E++I   +V  FK    LK
Sbjct: 64 PQTGAEIEIPASKVPAFKPGKALK 87


>gi|251796413|ref|YP_003011144.1| histone family protein DNA-binding protein [Paenibacillus sp.
          JDR-2]
 gi|247544039|gb|ACT01058.1| histone family protein DNA-binding protein [Paenibacillus sp.
          JDR-2]
          Length = 103

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 52/88 (59%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K + ++DL+  +++   LS+KD+T+ V  +F  I D+   G+ +++  F  F V+++ +R
Sbjct: 11 KQMNKTDLINKVAELSDLSKKDATKAVDAVFEAISDALQSGDKVQLVGFGNFEVRERQAR 70

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN QT +E+ I   ++  FK    LK
Sbjct: 71 KGRNPQTGEEIDIAASKMPAFKPGKSLK 98


>gi|301629532|ref|XP_002943892.1| PREDICTED: integration host factor subunit beta-like [Xenopus
          (Silurana) tropicalis]
          Length = 99

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDLV++++  F  L+ +D+   V  + + + D+ VRG+ I+I  F +F + ++  R+
Sbjct: 1  MTRSDLVEALATRFRQLTHRDAEHAVRAILDAVGDALVRGQRIEIRGFGSFSITRRPPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V+I  +RV  FK    L++ +
Sbjct: 61 GRNPRSGEAVQIPEKRVPHFKPGKALRESV 90


>gi|188577593|ref|YP_001914522.1| integration host factor subunit alpha [Xanthomonas oryzae pv.
          oryzae PXO99A]
 gi|188522045|gb|ACD59990.1| integration host factor, alpha subunit [Xanthomonas oryzae pv.
          oryzae PXO99A]
          Length = 92

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 50/84 (59%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          + + +  E GL+++++  FV   F+ + D+  +G  +K+S F  F +++K  R GRN +T
Sbjct: 1  MAERLFDEVGLNKREAKEFVDAFFDVLRDALEQGRQVKLSGFGNFDLRRKNQRPGRNPKT 60

Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93
           +E+ I  R VV F+    LK+R+
Sbjct: 61 GEEIPISARTVVTFRPGQKLKERV 84


>gi|94499185|ref|ZP_01305723.1| integration host factor alpha subunit [Oceanobacter sp. RED65]
 gi|94428817|gb|EAT13789.1| integration host factor alpha subunit [Oceanobacter sp. RED65]
          Length = 104

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 50/90 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + +  E GL+++++   V   F EI       E +K+S F  F +++K  R 
Sbjct: 3  AVTKADMAEKLFDELGLNKREAKEMVDIFFEEIRHCLTEKEQVKLSGFGNFDLREKRQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  R VV F+    LK ++
Sbjct: 63 GRNPKTGEEIPISARCVVTFRPGQKLKVQV 92


>gi|237733822|ref|ZP_04564303.1| DNA-binding protein HU [Mollicutes bacterium D7]
 gi|229383160|gb|EEO33251.1| DNA-binding protein HU [Coprobacillus sp. D7]
          Length = 90

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 53/86 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV+++SKE  L++KD+   V T+FN I  S V G+ + IS F TF V  + +R G
Sbjct: 1  MNKKELVETVSKERNLTKKDAEILVDTVFNTITRSVVEGDKVLISGFGTFKVNDRKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           + +T +E+ I   + V FK S+ LK
Sbjct: 61 ISPKTQEEMVIPASKTVTFKPSNRLK 86


>gi|229177513|ref|ZP_04304892.1| DNA-binding protein HU [Bacillus cereus 172560W]
 gi|228605960|gb|EEK63402.1| DNA-binding protein HU [Bacillus cereus 172560W]
          Length = 93

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K ++++  L++KD+      L + I ++   GE ++I  F TF V+++ +R G
Sbjct: 4  MNKTELTKVVAEKAELTQKDAAAATQALLDTITNALATGEKVQILGFGTFEVRERSARTG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +   FKA   LK+ +
Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKELKEAV 92


>gi|320353542|ref|YP_004194881.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
 gi|320122044|gb|ADW17590.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
          Length = 96

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 57/91 (62%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K +TR +L  S++++ G+S++++   V T+F  +  + V GE+IK+  F T  V+ K  R
Sbjct: 4  KNVTRKELAISVNEKLGVSQRNAAEIVDTVFAIMKTTMVAGESIKLVQFGTLTVRDKSPR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN +T + + I  R++V F+ S  L++R+
Sbjct: 64 RGRNPRTGESMTITKRQMVSFRPSKRLRERL 94


>gi|77165249|ref|YP_343774.1| histone-like DNA-binding protein [Nitrosococcus oceani ATCC
          19707]
 gi|254433630|ref|ZP_05047138.1| DNA-binding protein HU [Nitrosococcus oceani AFC27]
 gi|300114007|ref|YP_003760582.1| histone family protein DNA-binding protein [Nitrosococcus
          watsonii C-113]
 gi|76883563|gb|ABA58244.1| Histone-like DNA-binding protein [Nitrosococcus oceani ATCC
          19707]
 gi|207089963|gb|EDZ67234.1| DNA-binding protein HU [Nitrosococcus oceani AFC27]
 gi|299539944|gb|ADJ28261.1| histone family protein DNA-binding protein [Nitrosococcus
          watsonii C-113]
          Length = 90

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++S++    L++  + R V ++   + D+  RG+ + I  F TF V+ + +R G
Sbjct: 1  MNKSELIESVADAGNLTKAAAARAVDSVIEAVTDALRRGDQVTIVGFGTFSVRDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI   ++  FKA   LK  +
Sbjct: 61 RNPQTGEEIKIKASKMPSFKAGKALKDAV 89


>gi|16801114|ref|NP_471382.1| hypothetical protein lin2048 [Listeria innocua Clip11262]
 gi|16803973|ref|NP_465458.1| hypothetical protein lmo1934 [Listeria monocytogenes EGD-e]
 gi|46908167|ref|YP_014556.1| DNA-binding protein HU [Listeria monocytogenes serotype 4b str.
          F2365]
 gi|47094458|ref|ZP_00232138.1| DNA-binding protein HU [Listeria monocytogenes str. 4b H7858]
 gi|47097574|ref|ZP_00235105.1| DNA-binding protein HU [Listeria monocytogenes str. 1/2a F6854]
 gi|116873376|ref|YP_850157.1| DNA-binding protein HU [Listeria welshimeri serovar 6b str.
          SLCC5334]
 gi|217963914|ref|YP_002349592.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Listeria
          monocytogenes HCC23]
 gi|224498616|ref|ZP_03666965.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Listeria
          monocytogenes Finland 1988]
 gi|224501267|ref|ZP_03669574.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Listeria
          monocytogenes FSL R2-561]
 gi|226224538|ref|YP_002758645.1| non-specific DNA-binding protein HU [Listeria monocytogenes
          Clip81459]
 gi|254825571|ref|ZP_05230572.1| DNA-binding protein HU [Listeria monocytogenes FSL J1-194]
 gi|254827181|ref|ZP_05231868.1| DNA-binding protein HU [Listeria monocytogenes FSL N3-165]
 gi|254831465|ref|ZP_05236120.1| non-specific DNA-binding protein HU [Listeria monocytogenes
          10403S]
 gi|254852837|ref|ZP_05242185.1| DNA-binding protein HU [Listeria monocytogenes FSL R2-503]
 gi|254899369|ref|ZP_05259293.1| non-specific DNA-binding protein HU [Listeria monocytogenes
          J0161]
 gi|254912492|ref|ZP_05262504.1| DNA-binding protein HU [Listeria monocytogenes J2818]
 gi|254931895|ref|ZP_05265254.1| DNA-binding protein HU [Listeria monocytogenes HPB2262]
 gi|254936819|ref|ZP_05268516.1| DNA-binding protein HU [Listeria monocytogenes F6900]
 gi|254993467|ref|ZP_05275657.1| non-specific DNA-binding protein HU [Listeria monocytogenes FSL
          J2-064]
 gi|255522325|ref|ZP_05389562.1| non-specific DNA-binding protein HU [Listeria monocytogenes FSL
          J1-175]
 gi|284802379|ref|YP_003414244.1| hypothetical protein LM5578_2135 [Listeria monocytogenes 08-5578]
 gi|284995521|ref|YP_003417289.1| hypothetical protein LM5923_2086 [Listeria monocytogenes 08-5923]
 gi|289435283|ref|YP_003465155.1| DNA-binding protein HU [Listeria seeligeri serovar 1/2b str.
          SLCC3954]
 gi|290892094|ref|ZP_06555090.1| DNA-binding protein HU [Listeria monocytogenes FSL J2-071]
 gi|300763756|ref|ZP_07073753.1| DNA-binding protein HU [Listeria monocytogenes FSL N1-017]
 gi|315282964|ref|ZP_07871256.1| DNA-binding protein HU [Listeria marthii FSL S4-120]
 gi|315303883|ref|ZP_07874360.1| DNA-binding protein HU [Listeria ivanovii FSL F6-596]
 gi|16411387|emb|CAD00012.1| hup [Listeria monocytogenes EGD-e]
 gi|16414549|emb|CAC97278.1| hup [Listeria innocua Clip11262]
 gi|46881437|gb|AAT04733.1| DNA-binding protein HU [Listeria monocytogenes serotype 4b str.
          F2365]
 gi|47014049|gb|EAL05051.1| DNA-binding protein HU [Listeria monocytogenes str. 1/2a F6854]
 gi|47017173|gb|EAL08026.1| DNA-binding protein HU [Listeria monocytogenes str. 4b H7858]
 gi|116742254|emb|CAK21378.1| DNA-binding protein HU [Listeria welshimeri serovar 6b str.
          SLCC5334]
 gi|217333184|gb|ACK38978.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Listeria
          monocytogenes HCC23]
 gi|225877000|emb|CAS05709.1| Putative non-specific DNA-binding protein HU [Listeria
          monocytogenes serotype 4b str. CLIP 80459]
 gi|258599564|gb|EEW12889.1| DNA-binding protein HU [Listeria monocytogenes FSL N3-165]
 gi|258606166|gb|EEW18774.1| DNA-binding protein HU [Listeria monocytogenes FSL R2-503]
 gi|258609414|gb|EEW22022.1| DNA-binding protein HU [Listeria monocytogenes F6900]
 gi|284057941|gb|ADB68882.1| hypothetical protein LM5578_2135 [Listeria monocytogenes 08-5578]
 gi|284060988|gb|ADB71927.1| hypothetical protein LM5923_2086 [Listeria monocytogenes 08-5923]
 gi|289171527|emb|CBH28071.1| DNA-binding protein HU [Listeria seeligeri serovar 1/2b str.
          SLCC3954]
 gi|290558217|gb|EFD91735.1| DNA-binding protein HU [Listeria monocytogenes FSL J2-071]
 gi|293583447|gb|EFF95479.1| DNA-binding protein HU [Listeria monocytogenes HPB2262]
 gi|293590474|gb|EFF98808.1| DNA-binding protein HU [Listeria monocytogenes J2818]
 gi|293594814|gb|EFG02575.1| DNA-binding protein HU [Listeria monocytogenes FSL J1-194]
 gi|300515492|gb|EFK42542.1| DNA-binding protein HU [Listeria monocytogenes FSL N1-017]
 gi|307571516|emb|CAR84695.1| DNA-binding protein [Listeria monocytogenes L99]
 gi|313607937|gb|EFR84075.1| DNA-binding protein HU [Listeria monocytogenes FSL F2-208]
 gi|313613391|gb|EFR87243.1| DNA-binding protein HU [Listeria marthii FSL S4-120]
 gi|313618142|gb|EFR90235.1| DNA-binding protein HU [Listeria innocua FSL S4-378]
 gi|313623144|gb|EFR93410.1| DNA-binding protein HU [Listeria innocua FSL J1-023]
 gi|313627747|gb|EFR96403.1| DNA-binding protein HU [Listeria ivanovii FSL F6-596]
 gi|313632625|gb|EFR99610.1| DNA-binding protein HU [Listeria seeligeri FSL N1-067]
 gi|313637161|gb|EFS02693.1| DNA-binding protein HU [Listeria seeligeri FSL S4-171]
 gi|328466283|gb|EGF37440.1| DNA-binding protein HU [Listeria monocytogenes 1816]
 gi|328472777|gb|EGF43626.1| DNA-binding protein HU [Listeria monocytogenes 220]
 gi|332312374|gb|EGJ25469.1| DNA-binding protein HU 1 [Listeria monocytogenes str. Scott A]
          Length = 91

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 52/87 (59%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          ++DLV S+++   LS+KD+ + V  +F  I  S  +GE +++  F  F V+++ +R GRN
Sbjct: 4  KTDLVNSVAELADLSKKDAAKAVEAVFETIQTSLSKGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           +T +E+ I   +V  FK    LK+ +
Sbjct: 64 PRTKEEIDIPASKVPAFKPGKALKEAV 90


>gi|301061080|ref|ZP_07201877.1| putative DNA-binding protein HRL53 [delta proteobacterium NaphS2]
 gi|300444874|gb|EFK08842.1| putative DNA-binding protein HRL53 [delta proteobacterium NaphS2]
          Length = 95

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 56/92 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT++ L+ ++ ++  L +K +T  V +LF  I  + V GE + IS F  F VK K  R 
Sbjct: 2  TITKNKLIDAVDEKTELPKKTATSAVESLFEIIKRTLVSGEDVLISGFGKFVVKDKKKRK 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + + +D RR+V FK S+ L+ ++ D
Sbjct: 62 GRNPETGKGLILDARRIVSFKCSNKLRDKMND 93


>gi|149920506|ref|ZP_01908974.1| DNA-binding protein HU [Plesiocystis pacifica SIR-1]
 gi|149818687|gb|EDM78132.1| DNA-binding protein HU [Plesiocystis pacifica SIR-1]
          Length = 128

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L++ +++E GL++  +   V T+F  +  + V G+ I+I  F +F V+Q  +  G
Sbjct: 1  MTKSELIERVAQESGLTKGRAEMVVNTIFESMTHALVAGDGIEIRGFGSFTVRQYKAYEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   V + P+R+  FK    L++R+
Sbjct: 61 RNPRTGDVVHVAPKRLPFFKVGKELRERV 89


>gi|294102069|ref|YP_003553927.1| histone family protein DNA-binding protein [Aminobacterium
          colombiense DSM 12261]
 gi|293617049|gb|ADE57203.1| histone family protein DNA-binding protein [Aminobacterium
          colombiense DSM 12261]
          Length = 91

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV +++K  GL+++++   V  +   I +S  +G+ +++  F TF V+++ +R G
Sbjct: 1  MTKTDLVNAVAKATGLNKREAGAAVGAVLQAIENSLAKGDKVQLVGFGTFEVRERAAREG 60

Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93
          RN Q  ++V KI  ++V VF+    LK+++
Sbjct: 61 RNPQDPKKVIKIPAKKVPVFRPGKALKEKV 90


>gi|269468958|gb|EEZ80539.1| histone family protein DNA-binding [uncultured SUP05 cluster
          bacterium]
          Length = 91

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDLV +I++  GL++ D+ R +      I  +   G+ + I+ F +F V+ + +R G
Sbjct: 1  MNKSDLVAAIAETSGLTKADAARALDATTGAITSALSGGDNVAITGFGSFLVRDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I   +V  FKA  +LK+ +
Sbjct: 61 RNPQTGASIQIKASKVPAFKAGKLLKESV 89


>gi|315658244|ref|ZP_07911116.1| DNA-binding protein HU [Staphylococcus lugdunensis M23590]
 gi|315496573|gb|EFU84896.1| DNA-binding protein HU [Staphylococcus lugdunensis M23590]
          Length = 105

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 53/89 (59%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++DL+ +++++  L++K +   V  +F  I  S  +GE +++  F  F V+++ +R G
Sbjct: 16  MNKTDLINAVAEQADLTKKQAGSAVDAVFESIQTSLSKGEKVQLIGFGNFEVRERAARKG 75

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN QT +E++I   +V  FKA   LK  +
Sbjct: 76  RNPQTGKEIEIPASKVPAFKAGKALKDAV 104


>gi|229070625|ref|ZP_04203863.1| DNA-binding protein HU [Bacillus cereus F65185]
 gi|228712530|gb|EEL64467.1| DNA-binding protein HU [Bacillus cereus F65185]
          Length = 93

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K ++++  L++KD+      L + + ++   GE ++I  F TF V+++ +R G
Sbjct: 4  MNKTELTKVVAEKAELTQKDAAAATQALLDTVTNALANGEKVQILGFGTFEVRERSARTG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +   FKA   LK+ +
Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKELKEAV 92


>gi|40062481|gb|AAR37433.1| integration host factor, beta subunit, putative [uncultured
          marine bacterium 105]
          Length = 115

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV+ +S+   L++K S   V T+F  I  +  RGE I++  F +F ++Q+  R G
Sbjct: 1  MTKAELVEEVSRVSELTKKHSEVIVDTVFKSIVTALHRGEKIELRGFGSFRLRQREPRKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   V + P++V  FK    LK+ I
Sbjct: 61 RNPKTGDRVDVPPKKVPYFKPGKDLKELI 89


>gi|260583468|ref|ZP_05851216.1| DNA-binding protein HU [Granulicatella elegans ATCC 700633]
 gi|260158094|gb|EEW93162.1| DNA-binding protein HU [Granulicatella elegans ATCC 700633]
          Length = 92

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 52/85 (61%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV  ++K+  L++KD +  V  LF  I ++   GE +++  F  F V+++ +R GR
Sbjct: 3  NKAELVDRVAKKTQLTKKDVSAAVDALFETIQEALQAGEKVQVIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90
          N Q+ +E++I+  +V  FKA   LK
Sbjct: 63 NPQSGEEIQIEASKVPAFKAGKALK 87


>gi|73662582|ref|YP_301363.1| nucleoid DNA-binding protein HU [Staphylococcus saprophyticus
          subsp. saprophyticus ATCC 15305]
 gi|72495097|dbj|BAE18418.1| bacterial nucleoid DNA-binding protein HU [Staphylococcus
          saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 90

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 52/86 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++  L++K++   V  +F  I  S  +GE +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAEQADLTKKEAGLAVDAVFESIQSSLSKGEKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+ I   +V  FKA   LK
Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALK 86


>gi|238927161|ref|ZP_04658921.1| DNA-binding protein HU [Selenomonas flueggei ATCC 43531]
 gi|238884943|gb|EEQ48581.1| DNA-binding protein HU [Selenomonas flueggei ATCC 43531]
          Length = 100

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 52/87 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+ + +LV +++++  L++KD+ + V  LF  I  +   G+ +++  F TF VK + +R 
Sbjct: 10 TLNKQELVANVAEQASLTKKDAEKAVNALFETIKGALSEGDKVQLIGFGTFEVKDRKARK 69

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN QT + ++I   R  VFKA   LK
Sbjct: 70 GRNPQTGKVIEIAASRNPVFKAGKALK 96


>gi|238898892|ref|YP_002924574.1| integration host factor (IHF), DNA-binding protein, alpha subunit
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229466652|gb|ACQ68426.1| integration host factor (IHF), DNA-binding protein, alpha subunit
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 107

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 60/105 (57%), Gaps = 8/105 (7%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA----IKISSFATFHVKQK 59
           TIT++D++  +S++FGL  K+S   +   F EI    + G+     +K S F  F+++ K
Sbjct: 2   TITKADILDDVSEKFGLEPKESKDLLELFFEEI--RCILGDEECSELKFSGFGNFNLRDK 59

Query: 60  GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
            +R GRN +T ++V I  RRVV F A   LK + + +    KC+K
Sbjct: 60  KARPGRNPKTGEDVLIKKRRVVTFHAG--LKLKTLIENGNEKCSK 102


>gi|169350831|ref|ZP_02867769.1| hypothetical protein CLOSPI_01605 [Clostridium spiroforme DSM
          1552]
 gi|169292417|gb|EDS74550.1| hypothetical protein CLOSPI_01605 [Clostridium spiroforme DSM
          1552]
          Length = 91

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV++I+    +++ D  + +T+    + D+ V+GE + +  F  F ++++G R G
Sbjct: 1  MNKTELVEAIASNTNMTKTDVDKVITSFIEVVTDALVKGEKVSLKGFGNFEIRERGERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I   +   FKASS LK  +
Sbjct: 61 RNPRTGETMTISASKAPAFKASSALKNAV 89


>gi|39996845|ref|NP_952796.1| integration host factor subunit beta [Geobacter sulfurreducens
          PCA]
 gi|39983733|gb|AAR35123.1| integration host factor, beta subunit [Geobacter sulfurreducens
          PCA]
 gi|298505860|gb|ADI84583.1| integration host factor, beta subunit [Geobacter sulfurreducens
          KN400]
          Length = 92

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++++ E GL+ K +   V  +F+ +  + +R E I+I  F +F VK   S  G
Sbjct: 1  MNKSELIEALAAEKGLTYKKAEEVVNIVFDSMSSAMIRNERIEIRGFGSFVVKDYKSYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + +++ P+++  FK    LK+R+
Sbjct: 61 RNPKTGEPIEVKPKKLPFFKVGKELKERV 89


>gi|330503833|ref|YP_004380702.1| integration host factor subunit alpha [Pseudomonas mendocina
          NK-01]
 gi|328918119|gb|AEB58950.1| integration host factor subunit alpha [Pseudomonas mendocina
          NK-01]
          Length = 92

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          + + + +E GL+++++   V   F EI  +    E +K+S F  F ++ K  R GRN +T
Sbjct: 1  MAERLYEELGLNKREAKELVELFFEEIRQALELNEQVKLSGFGNFDLRDKRQRPGRNPKT 60

Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93
           +E+ I  RRVV F+    LK R+
Sbjct: 61 GEEIPITARRVVTFRPGQKLKARV 84


>gi|89099134|ref|ZP_01172013.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus sp. NRRL
          B-14911]
 gi|89086264|gb|EAR65386.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus sp. NRRL
          B-14911]
          Length = 90

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   LS+KD+T+ V  +F+ I ++   G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTELINAVAEAGELSKKDATKAVDAVFDTILNALKNGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I   +V  FK    LK  +
Sbjct: 61 RNPQTGDEIEIAASKVPAFKPGKALKDAV 89


>gi|301156331|emb|CBW15802.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Haemophilus parainfluenzae T3T1]
          Length = 99

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+ D+ + +  ++ L + ++   V   F EI  S   G  +K+S F  F ++ K SR 
Sbjct: 3  TITKIDITEYLLDKYQLQKAEAKALVEDFFEEIRLSLESGGEVKLSGFGNFELRNKASRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + + +  RRVV FK    L+ R+
Sbjct: 63 GRNPKTGESIPVSARRVVAFKPGQKLRARV 92


>gi|289550748|ref|YP_003471652.1| DNA-binding protein HBsu [Staphylococcus lugdunensis HKU09-01]
 gi|289180280|gb|ADC87525.1| DNA-binding protein HBsu [Staphylococcus lugdunensis HKU09-01]
          Length = 90

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 52/86 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++  L++K +   V  +F  I  S  +GE +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAEQADLTKKQAGSAVDAVFESIQTSLSKGEKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I   +V  FKA   LK
Sbjct: 61 RNPQTGKEIEIPASKVPAFKAGKALK 86


>gi|83591632|ref|YP_425384.1| integration host factor, subunit beta [Rhodospirillum rubrum ATCC
          11170]
 gi|123726093|sp|Q2RXP8|IHFB_RHORT RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|83574546|gb|ABC21097.1| Integration host factor, beta subunit [Rhodospirillum rubrum ATCC
          11170]
          Length = 100

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 55/88 (62%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  I+ +   L ++D  R V+T+F+EI D+  RG+ +++  F  F VK++ +R+
Sbjct: 1  MTKSELIARIAERNPHLYQRDVERIVSTIFDEIADALARGDRVELRGFGAFSVKRRDARM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
          GRN +T + V +D +    FK    L++
Sbjct: 61 GRNPRTGETVDVDAKVAPYFKTGKQLRE 88


>gi|302876598|ref|YP_003845231.1| histone family protein DNA-binding protein [Clostridium
          cellulovorans 743B]
 gi|307687272|ref|ZP_07629718.1| histone family protein DNA-binding protein [Clostridium
          cellulovorans 743B]
 gi|302579455|gb|ADL53467.1| histone family protein DNA-binding protein [Clostridium
          cellulovorans 743B]
          Length = 91

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ SI+++ GL++KD+   +      I ++  + E +++  F TF VK++  R G
Sbjct: 1  MNKTELISSIAEKSGLTKKDAEAALKGFMESIQEALEKKEKVQLVGFGTFEVKERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E+KI    V  FKA   LK R+
Sbjct: 61 RNPRTKEEIKIPASSVPSFKAGKELKDRV 89


>gi|227873321|ref|ZP_03991583.1| DNA-binding protein HU [Oribacterium sinus F0268]
 gi|227840836|gb|EEJ51204.1| DNA-binding protein HU [Oribacterium sinus F0268]
          Length = 90

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLV +++K+  LS+KD+   V  +F+ I ++  +G+ +++  F TF V ++ +R G
Sbjct: 1  MNKVDLVSAVAKQAELSKKDAGLAVEAVFDAISEALEKGDKVQLIGFGTFDVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + +KI   +   FKA   LK R+
Sbjct: 61 RNPRTGETMKIAASKAPRFKAGKALKDRV 89


>gi|330810587|ref|YP_004355049.1| transcription factor, unclassified [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327378695|gb|AEA70045.1| putative Transcription factor, unclassified [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 92

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          + + + +E GL+++++   V   F EI  +    E +K+S F  F ++ K  R GRN +T
Sbjct: 1  MAERLYEELGLNKREAKELVELFFEEIRHALEDNEQVKLSGFGNFDLRDKRQRPGRNPKT 60

Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93
           +E+ I  RRVV F+    LK R+
Sbjct: 61 GEEIPITARRVVTFRPGQKLKARV 84


>gi|325578436|ref|ZP_08148571.1| integration host factor subunit alpha [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160172|gb|EGC72301.1| integration host factor subunit alpha [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 110

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           TIT+ D+ + +  ++ L + ++   V   F EI  S   G  +K+S F  F ++ K SR 
Sbjct: 14  TITKIDITEYLLDKYQLQKAEAKALVEDFFEEIRLSLESGGEVKLSGFGNFELRNKASRP 73

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN +T + + +  RRVV FK    L+ R+
Sbjct: 74  GRNPKTGESIPVSARRVVAFKPGQKLRARV 103


>gi|14194639|sp|Q9XB22|DBH_STRDO RecName: Full=DNA-binding protein HU
 gi|5209330|gb|AAD40809.1|L38959_1 histone-like DNA-binding protein [Streptococcus sobrinus]
          Length = 91

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 49/84 (58%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V T+F+ I     +GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVDTVFSSIEGFLSKGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT  E+KI   +V  FKA   LK
Sbjct: 64 PQTGAEIKIAASKVPAFKAGKALK 87


>gi|253996481|ref|YP_003048545.1| histone family protein DNA-binding protein [Methylotenera mobilis
          JLW8]
 gi|253983160|gb|ACT48018.1| histone family protein DNA-binding protein [Methylotenera mobilis
          JLW8]
          Length = 90

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV  ++ E G+++ D+ R +  + N + ++   G+ + +  F TF V +K +R G
Sbjct: 1  MNKSELVAKVAAEAGVTQADTNRVLDAIINTVGEALKAGDNVALVGFGTFQVTKKAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T   ++I  R   VFKA   LK ++
Sbjct: 61 RNPSTGATIQIAARNAPVFKAGKTLKDKV 89


>gi|319789111|ref|YP_004150744.1| histone family protein DNA-binding protein [Thermovibrio
          ammonificans HB-1]
 gi|317113613|gb|ADU96103.1| histone family protein DNA-binding protein [Thermovibrio
          ammonificans HB-1]
          Length = 99

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 56/94 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+LV +I+++ G+ +KD+   +      + ++  +GE ++I  F TF +K++  RV 
Sbjct: 1  MTKSELVAAIAEKAGIRKKDAEAALNAFIAVVTEALKKGEKVEIRGFGTFLMKERAQRVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T ++V + P+ V  FK    LK+    +++
Sbjct: 61 RNPKTGEKVTVPPKLVPAFKPGKDLKEATEQELK 94


>gi|290968877|ref|ZP_06560414.1| putative integration host factor, beta subunit [Megasphaera
          genomosp. type_1 str. 28L]
 gi|290781173|gb|EFD93764.1| putative integration host factor, beta subunit [Megasphaera
          genomosp. type_1 str. 28L]
          Length = 92

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 54/86 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ +  L++KD+ + V  +F  I +S  +G+ ++I  F TF V+Q+ +R G
Sbjct: 1  MNKTELIANVATKSDLTKKDAEKAVKAVFESISESLTKGDKVQIIGFGTFEVRQRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN + N+ ++I+  +   FKA   LK
Sbjct: 61 RNPRNNEPIQIEASKTPAFKAGKQLK 86


>gi|315661119|gb|ADU54569.1| histone-like DNA binding protein [Lactobacillus agilis]
          Length = 101

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 51/85 (60%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           ++ L+++++++ GL++KD+T  V  +F  I D    GE +++  F  F V+++ +R GR
Sbjct: 13 NKAQLIENVAEKTGLTKKDATVAVDAVFGSIQDFLKDGEKVQLIGFGNFEVRERAARKGR 72

Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90
          N QT  E++I   +V  FK    LK
Sbjct: 73 NPQTGAEIEIPASKVPAFKPGKALK 97


>gi|224476592|ref|YP_002634198.1| DNA-binding protein HU [Staphylococcus carnosus subsp. carnosus
          TM300]
 gi|222421199|emb|CAL28013.1| DNA-binding protein HU [Staphylococcus carnosus subsp. carnosus
          TM300]
          Length = 90

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 52/86 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++  L++K++   V  +F  I  S  +GE +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAEQAELTKKEAGLAVDAVFESIQSSLSKGEKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+ I   +V  FKA   LK
Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALK 86


>gi|9630187|ref|NP_046614.1| histone-like prokaryotic DNA-binding protein family [Bacillus
          phage SPBc2]
 gi|16079164|ref|NP_389988.1| HU-related DNA-binding protein; phage SPbeta [Bacillus subtilis
          subsp. subtilis str. 168]
 gi|221310012|ref|ZP_03591859.1| hypothetical protein Bsubs1_11596 [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221314334|ref|ZP_03596139.1| hypothetical protein BsubsN3_11517 [Bacillus subtilis subsp.
          subtilis str. NCIB 3610]
 gi|221319256|ref|ZP_03600550.1| hypothetical protein BsubsJ_11443 [Bacillus subtilis subsp.
          subtilis str. JH642]
 gi|221323532|ref|ZP_03604826.1| hypothetical protein BsubsS_11572 [Bacillus subtilis subsp.
          subtilis str. SMY]
 gi|56405013|sp|P68573|DBH2_BACSU RecName: Full=SPBc2 prophage-derived DNA-binding protein HU 2
 gi|56405014|sp|P68574|DBH2_BPSPC RecName: Full=DNA-binding protein HU 2
 gi|2634525|emb|CAB14023.1| putative HU-related DNA-binding protein; phage SPbeta [Bacillus
          subtilis subsp. subtilis str. 168]
 gi|3025540|gb|AAC13035.1| histone-like prokaryotic DNA-binding protein family [Bacillus
          phage SPbeta]
          Length = 92

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 51/86 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G+S+K+    V  +F+ I ++   GE + I  F TF V+++ +R G
Sbjct: 1  MNKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+ I   +   FK +  LK
Sbjct: 61 RNPQTGEEIDIPATKAPAFKPAKALK 86


>gi|284043331|ref|YP_003393671.1| histone family protein DNA-binding protein [Conexibacter woesei
          DSM 14684]
 gi|283947552|gb|ADB50296.1| histone family protein DNA-binding protein [Conexibacter woesei
          DSM 14684]
          Length = 91

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+ V  ++   GLS+KD+   V  +   I ++  RG  +  S F  FHV ++G+R G
Sbjct: 1  MTKSEFVDQVAANSGLSKKDAGDAVDAVLQTIEEALKRGSEVTFSGFGKFHVAERGAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T ++++I   RV  F   S LK+ +
Sbjct: 61 RNPSTGEKIQIAASRVPRFTPGSGLKRAV 89


>gi|228925137|ref|ZP_04088247.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228834476|gb|EEM80005.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 93

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K I+++  L++KD+      + + I ++   GE ++I  F TF V+++ +R G
Sbjct: 4  MNKTELTKVIAEKAELTQKDAAAATQAVLDTITNALANGEKVQILGFGTFEVRERSARTG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +   FKA   LK+ +
Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKELKEAV 92


>gi|308069517|ref|YP_003871122.1| DNA-binding protein HU 1 (DNA-binding protein II) [Paenibacillus
          polymyxa E681]
 gi|305858796|gb|ADM70584.1| DNA-binding protein HU 1 (DNA-binding protein II) [Paenibacillus
          polymyxa E681]
          Length = 90

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  +S+   LS+KD T+ +  +F  I  +   G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINQVSESTELSKKDVTKAIDAVFEAISGALQSGDKVQLVGFGNFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   ++  FK    LK  I
Sbjct: 61 RNPQTGEEIEIPASKIPAFKPGKALKDGI 89


>gi|257455234|ref|ZP_05620469.1| DNA-binding protein HU-beta [Enhydrobacter aerosaccus SK60]
 gi|257447196|gb|EEV22204.1| DNA-binding protein HU-beta [Enhydrobacter aerosaccus SK60]
          Length = 90

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV SI+K+ GLS+  ST  +      I ++    + + +  F TF VK++ +R G
Sbjct: 1  MNKSELVDSIAKKSGLSKAQSTEALNAFIATIGEAMKANDTVSLVGFGTFSVKERQARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I   +V  FKA   LK
Sbjct: 61 RNPQTKEEIQIPASKVPSFKAGKSLK 86


>gi|326943503|gb|AEA19396.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 90

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K I+++  L++KD+      + + I ++   GE ++I  F TF V+++ +R G
Sbjct: 1  MNKTELTKVIAEKAELTQKDAAAATQAVLDTITNALANGEKVQILGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +   FKA   LK+ +
Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELKEAV 89


>gi|311068519|ref|YP_003973442.1| putative HU-related DNA-binding protein; phage SPbeta [Bacillus
          atrophaeus 1942]
 gi|310869036|gb|ADP32511.1| putative HU-related DNA-binding protein; phage SPbeta [Bacillus
          atrophaeus 1942]
          Length = 91

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 50/71 (70%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ G+++K++T  V  +F  + ++  +GE IK+S F TF V+++ +R G
Sbjct: 1  MNKAELVGAVAEKLGVTKKEATPKVEAVFEVLAETLSKGEEIKVSGFGTFEVRERAARKG 60

Query: 65 RNLQTNQEVKI 75
          RN Q+ +E+ I
Sbjct: 61 RNPQSGEEIDI 71


>gi|42519971|ref|NP_965886.1| HU family DNA-binding protein [Wolbachia endosymbiont of
          Drosophila melanogaster]
 gi|225677276|ref|ZP_03788259.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
          Muscidifurax uniraptor]
 gi|42409708|gb|AAS13820.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
          Drosophila melanogaster]
 gi|225590696|gb|EEH11940.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
          Muscidifurax uniraptor]
          Length = 101

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 49/80 (61%)

Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV 73
          I++E GLS++DS   +  + +EI  S V+   +KISSF TF VK+K  R G    T+++V
Sbjct: 20 INQEIGLSKEDSVSIIDDILDEIKTSLVKDGIVKISSFGTFLVKKKKERPGNIPNTSEKV 79

Query: 74 KIDPRRVVVFKASSILKKRI 93
           I  R  V F+ S I+KK I
Sbjct: 80 MIQARNSVSFRPSKIIKKSI 99


>gi|241889358|ref|ZP_04776659.1| DNA-binding protein HU [Gemella haemolysans ATCC 10379]
 gi|317496555|ref|ZP_07954904.1| DNA-binding protein [Gemella moribillum M424]
 gi|329767598|ref|ZP_08259119.1| DNA-binding protein HU [Gemella haemolysans M341]
 gi|329768861|ref|ZP_08260289.1| DNA-binding protein HU [Gemella sanguinis M325]
 gi|241863901|gb|EER68282.1| DNA-binding protein HU [Gemella haemolysans ATCC 10379]
 gi|316913358|gb|EFV34855.1| DNA-binding protein [Gemella moribillum M424]
 gi|328837224|gb|EGF86861.1| DNA-binding protein HU [Gemella sanguinis M325]
 gi|328839225|gb|EGF88809.1| DNA-binding protein HU [Gemella haemolysans M341]
          Length = 90

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 51/86 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  ++++ GL +K +T  +      + ++  +GE I+I  F  F V+++ +R G
Sbjct: 1  MNKSELISKVAEKSGLQKKQATAAIEAFVETVEETLAKGEKIQIIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QTN+ ++I   +V  FKA   LK
Sbjct: 61 RNPQTNEVIEIAASKVPAFKAGKALK 86


>gi|228899754|ref|ZP_04064001.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222]
 gi|228912379|ref|ZP_04076069.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
 gi|228847234|gb|EEM92198.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
 gi|228859868|gb|EEN04281.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222]
          Length = 90

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 56/89 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  +S++  L++K++T  V  + ++I  S  + E++++  F TF V+++ +R G
Sbjct: 1  MNKTELINQVSEKTSLTKKEATASVQAILDQITQSLQKEESVQLIGFGTFEVRKRSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  FKA   LK+ +
Sbjct: 61 RNPQTGEEMHIPGGKVPGFKAGKALKEAV 89


>gi|209965767|ref|YP_002298682.1| integration host factor, beta subunit [Rhodospirillum centenum
          SW]
 gi|226709803|sp|B6IUP4|IHFB_RHOCS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|209959233|gb|ACI99869.1| integration host factor, beta subunit [Rhodospirillum centenum
          SW]
          Length = 93

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 59/93 (63%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  ++ +   L ++D  + VTT+F+EI D+  RG+ +++  F  F VK++ +R+
Sbjct: 1  MTKSELILRLAERNPHLYQRDVEKIVTTIFDEITDALARGDRVELRGFGAFSVKKRDARL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V ++ + +  FK    L++R+  D
Sbjct: 61 GRNPRTGETVDVNQKFIPFFKTGKQLRERLNTD 93


>gi|154498745|ref|ZP_02037123.1| hypothetical protein BACCAP_02736 [Bacteroides capillosus ATCC
          29799]
 gi|150272135|gb|EDM99339.1| hypothetical protein BACCAP_02736 [Bacteroides capillosus ATCC
          29799]
          Length = 91

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 51/86 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ + +++ GLS+KD+   +    + I  +   G+ I++  F +F VK + +R+G
Sbjct: 1  MNKAELINAAAEKAGLSKKDTENALNAALDVIAAALAEGDKIQLVGFGSFEVKSRAARIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E+ I   +V VFK    LK
Sbjct: 61 RNPKTKEEITIPASKVPVFKPGKALK 86


>gi|148244747|ref|YP_001219441.1| DNA-binding protein HU-beta [Candidatus Vesicomyosocius okutanii
          HA]
 gi|146326574|dbj|BAF61717.1| DNA-binding protein HU-beta [Candidatus Vesicomyosocius okutanii
          HA]
          Length = 91

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDLV  IS+   L++ DS R +  +   I  +   G+ + I+ F +F V+ + +R G
Sbjct: 1  MNKSDLVAVISQISNLTKADSARALDAMTGAITSALTSGDNVAITGFGSFVVRDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I   +V  FKA  +LK+ +
Sbjct: 61 RNPQTGEAIQIKASKVPAFKAGKLLKESV 89


>gi|269468323|gb|EEZ79999.1| bacterial nucleoid DNA-binding protein [uncultured SUP05 cluster
          bacterium]
          Length = 95

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 49/87 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++T+ D+V ++ +   +S   +       F+ I  +   GE +K+S F  F+++QK +R 
Sbjct: 2  SVTKKDIVDALVERLSMSHNQALVVTNEFFDSIKQTLALGEDVKLSGFGNFNIRQKSARP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T + V I  R+VV FKA   LK
Sbjct: 62 GRNPKTGETVTISARKVVTFKAGPKLK 88


>gi|288575052|ref|ZP_06393409.1| histone family protein DNA-binding protein [Dethiosulfovibrio
          peptidovorans DSM 11002]
 gi|288570793|gb|EFC92350.1| histone family protein DNA-binding protein [Dethiosulfovibrio
          peptidovorans DSM 11002]
          Length = 91

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L+++++K   LS+K +   V+ +   + ++ V+GE +++  F TF V+++ +R G
Sbjct: 1  MTKTELIEAVAKSAELSKKAAGEAVSAVLESVEEALVKGEKVQLVGFGTFEVRERAARTG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRI 93
          RN Q  ++ ++I  ++V VF+    LK R+
Sbjct: 61 RNPQDPEKTIEIPAKKVPVFRPGKALKDRV 90


>gi|148260716|ref|YP_001234843.1| integration host factor, beta subunit [Acidiphilium cryptum JF-5]
 gi|326403912|ref|YP_004283994.1| integration host factor beta subunit [Acidiphilium multivorum
          AIU301]
 gi|146402397|gb|ABQ30924.1| integration host factor, beta subunit [Acidiphilium cryptum JF-5]
 gi|325050774|dbj|BAJ81112.1| integration host factor beta subunit [Acidiphilium multivorum
          AIU301]
          Length = 113

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 56/95 (58%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRS+L+ +++ +   L+  D  R VT +F+E+  +   G  +++  F  F VKQ+ +R 
Sbjct: 1  MTRSELIAALAADHPHLTLADVERIVTAMFDEMTATLAAGGRVELRGFGAFSVKQRQARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T + VK+D + V  F+A   L++ +   M+
Sbjct: 61 GRNPRTGETVKVDEKTVPFFRAGRELREMVNAGMK 95


>gi|295424943|ref|ZP_06817655.1| DNA-binding protein HU [Lactobacillus amylolyticus DSM 11664]
 gi|295065382|gb|EFG56278.1| DNA-binding protein HU [Lactobacillus amylolyticus DSM 11664]
          Length = 94

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ +++LVK I+++  + +KD+   + ++ + I D  V+G  +++  F TF V+ + +R 
Sbjct: 3  SVNKAELVKEIAEKTEMKKKDAEAVLESVISTIQDELVKGNKVQLIGFGTFEVRHRAARK 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QT +E+ I   +V  FK    LK+ +
Sbjct: 63 GRNPQTGKEITIPATQVPAFKPGKALKESV 92


>gi|187729724|ref|YP_001837313.1| integration host factor subunit A-like protein [Acidithiobacillus
          caldus]
 gi|167782109|gb|ACA00180.1| integration host factor subunit A-like protein [Acidithiobacillus
          caldus]
          Length = 112

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 49/87 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR DL   ++   G +  ++   V   F++I  +  +GE +K+S F  F ++ K +R 
Sbjct: 2  TVTRKDLAYYLADTLGFTVTEARTIVDRFFDQIRQTLAQGEEVKLSGFGNFVLRDKRARP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T   V+I  RRVV F AS  LK
Sbjct: 62 GRNPKTKVPVEITARRVVTFHASQSLK 88


>gi|303326346|ref|ZP_07356789.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3]
 gi|302864262|gb|EFL87193.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3]
          Length = 122

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 2/87 (2%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQK 59
           M KT+T++D+V++I +E   +R D    V  L  EI  +A++ + A+ IS F  F    K
Sbjct: 28  MKKTLTKADIVEAIYEETDKNRVDVKNVVEQLL-EIMKTAIKKDRALLISGFGKFECYDK 86

Query: 60  GSRVGRNLQTNQEVKIDPRRVVVFKAS 86
            SR GRN QT++ + + PR+V+VF+ S
Sbjct: 87  ASRKGRNPQTDETITLPPRKVMVFRLS 113


>gi|212702487|ref|ZP_03310615.1| hypothetical protein DESPIG_00504 [Desulfovibrio piger ATCC
          29098]
 gi|212674148|gb|EEB34631.1| hypothetical protein DESPIG_00504 [Desulfovibrio piger ATCC
          29098]
          Length = 91

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K++++E  L   D++  V T  + + DS + G+ I+I  F +F +K+     G
Sbjct: 1  MNKSELIKALAEESNLPFDDASLVVNTFIDAMKDSLIAGDRIEIRGFGSFKIKEYSGYAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + V + P+R+  F+A   LK+ I
Sbjct: 61 RNPKTGESVSVVPKRLPFFRAGKELKEYI 89


>gi|58699046|ref|ZP_00373888.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
          Drosophila ananassae]
 gi|225629912|ref|YP_002726703.1| DNA-binding protein, HU family [Wolbachia sp. wRi]
 gi|58534440|gb|EAL58597.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
          Drosophila ananassae]
 gi|225591893|gb|ACN94912.1| DNA-binding protein, HU family [Wolbachia sp. wRi]
          Length = 101

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 50/84 (59%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          +V  I++E GLS++DS   +  + +EI  S  +   +KISSF TF VK+K  R G    T
Sbjct: 16 IVGDINQEIGLSKEDSASIIDDILDEIKTSLAKDGIVKISSFGTFLVKKKKERPGNIPNT 75

Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93
          +++V I  R  V F+ S I+KK I
Sbjct: 76 SEKVMIQARNSVSFRPSKIIKKSI 99


>gi|297569210|ref|YP_003690554.1| histone family protein DNA-binding protein [Desulfurivibrio
          alkaliphilus AHT2]
 gi|296925125|gb|ADH85935.1| histone family protein DNA-binding protein [Desulfurivibrio
          alkaliphilus AHT2]
          Length = 97

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +TR DL K+I+++ G S++ +   V  +F+ +  + +  E IK+  F TF+V++K  R 
Sbjct: 5  NLTRKDLAKAINEKMGFSQRSAADLVDIVFDRLKATLLAEEPIKLVQFGTFNVRRKSPRQ 64

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   ++I  R ++ F+ S  +++RI
Sbjct: 65 GRNPRTGDPMEISKRSMISFRPSKSVRERI 94


>gi|169350609|ref|ZP_02867547.1| hypothetical protein CLOSPI_01380 [Clostridium spiroforme DSM
          1552]
 gi|169292663|gb|EDS74796.1| hypothetical protein CLOSPI_01380 [Clostridium spiroforme DSM
          1552]
          Length = 103

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 53/86 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L++S+SKE  L++KD+   V T+FN I  S + G+ + IS F TF V  + +R G
Sbjct: 14 MNKKELIESVSKERNLTKKDAEILVDTVFNTITRSVIEGDKVLISGFGTFKVNDRKARKG 73

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           + +T +E+ I   + V FK S+ LK
Sbjct: 74 ISPKTQEEMIIPASKTVTFKPSNRLK 99


>gi|124494290|gb|ABN13185.1| non-specific DNA-binding protein HBsu [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|124494310|gb|ABN13204.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
 gi|124494330|gb|ABN13223.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
 gi|124494350|gb|ABN13242.1| non-specific DNA-binding protein HBsu [Bacillus subtilis subsp.
          spizizenii str. W23]
 gi|124494370|gb|ABN13261.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
 gi|124494390|gb|ABN13280.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
 gi|124494410|gb|ABN13299.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
 gi|124494429|gb|ABN13317.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
 gi|124494450|gb|ABN13337.1| non-specific DNA-binding protein HBsu [Bacillus subtilis subsp.
          subtilis str. SMY]
 gi|124494470|gb|ABN13356.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
 gi|124494490|gb|ABN13375.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
 gi|124494510|gb|ABN13394.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
 gi|124494530|gb|ABN13413.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
          Length = 86

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 51/83 (61%)

Query: 11 VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTN 70
          + ++++   LS+KD+T+ V ++F+ I D+   G+ I++  F  F V+++ +R GRN QT 
Sbjct: 1  INAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKGRNPQTG 60

Query: 71 QEVKIDPRRVVVFKASSILKKRI 93
          +E++I   +V  FK    LK  +
Sbjct: 61 EEIEIPASKVPAFKPGKALKDAV 83


>gi|299821635|ref|ZP_07053523.1| DNA-binding protein HU [Listeria grayi DSM 20601]
 gi|299817300|gb|EFI84536.1| DNA-binding protein HU [Listeria grayi DSM 20601]
          Length = 112

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 52/87 (59%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
           ++DLV ++++   LS+KD+ + V  +F  I  S  +GE +++  F  F V+++ +R GRN
Sbjct: 25  KTDLVNNVAELADLSKKDAAKAVEAVFETIQTSLSKGEKVQLIGFGNFEVRERAARKGRN 84

Query: 67  LQTNQEVKIDPRRVVVFKASSILKKRI 93
            +T +E+ I   +V  FK    LK+ +
Sbjct: 85  PRTKEEIDIPASKVPAFKPGKALKEAV 111


>gi|323701600|ref|ZP_08113272.1| histone family protein DNA-binding protein [Desulfotomaculum
          nigrificans DSM 574]
 gi|323533373|gb|EGB23240.1| histone family protein DNA-binding protein [Desulfotomaculum
          nigrificans DSM 574]
          Length = 95

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 56/91 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  L++KD+ + V+ + + I ++  +G+ I++  F TF  K + +R G
Sbjct: 1  MNKAELISAVAEKTELTKKDAEKAVSAVLDSIQEAMAKGDKIQLVGFGTFESKARKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + ++I   RV VFK    LK  + +
Sbjct: 61 RNPQTGETIQIPATRVPVFKPGKALKDAVAN 91


>gi|30468180|ref|NP_849067.1| DNA-binding protein Hu homolog [Cyanidioschyzon merolae strain 10D]
 gi|19911236|dbj|BAB86889.1| histone-like protein of chloroplast [Cyanidioschyzon merolae]
 gi|30409280|dbj|BAC76229.1| DNA-binding protein Hu homolog [Cyanidioschyzon merolae strain 10D]
          Length = 112

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 60/102 (58%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L+ +++++ GLS+K     +  + ++I    V G+ +K+  F TF  + + +R G
Sbjct: 1   MDKTELISAVAEKVGLSKKQVREVINEILSQIAKQLVLGQKVKLVGFGTFSKQYRAARDG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           RN +T + + I  R VVVF   S LK+++ + M+    +++D
Sbjct: 61  RNPRTGERLIIPERHVVVFSPGSDLKQQVQEPMQQASQSQED 102


>gi|218848087|ref|YP_002454740.1| DNA-binding protein HU [Bacillus cereus G9842]
 gi|218546218|gb|ACK98611.1| DNA-binding protein HU [Bacillus cereus G9842]
          Length = 90

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 52/86 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+K +++   L++KD++     + + I ++ + GE +++  F TF V+++ +R G
Sbjct: 1  MNKTALIKHVAEHTELTQKDASAATQAVLDTITEALMNGEKVQLIGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+ I   +V  FKA   LK
Sbjct: 61 RNPQTGEEMHIAASKVPAFKAGKELK 86


>gi|328953615|ref|YP_004370949.1| histone family protein DNA-binding protein [Desulfobacca
          acetoxidans DSM 11109]
 gi|328453939|gb|AEB09768.1| histone family protein DNA-binding protein [Desulfobacca
          acetoxidans DSM 11109]
          Length = 98

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++ LV+ + ++  LS+ ++ + V  +F  I  +    E + IS F  + VK K  R G
Sbjct: 3  LTKASLVQVLFEKEILSKAEAAKVVDAVFRIIKQTLAEKEDVLISGFGKWLVKTKKERRG 62

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT Q++ ID RRVV F+AS +L++ I
Sbjct: 63 RNPQTGQDLTIDARRVVTFRASGVLRRLI 91


>gi|149180539|ref|ZP_01859043.1| non-specific DNA-binding protein [Bacillus sp. SG-1]
 gi|148851692|gb|EDL65838.1| non-specific DNA-binding protein [Bacillus sp. SG-1]
          Length = 91

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ ++++   LS+KD+   V  +   I D+  +GE +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAESAELSKKDAENAVKAVLQNIEDTLAKGEKVQLIGFGNFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I   +   FK    LK
Sbjct: 61 RNPQTGEEMEIPATKQPAFKPGKALK 86


>gi|33602628|ref|NP_890188.1| histone-like DNA-binding protein [Bordetella bronchiseptica RB50]
 gi|33577070|emb|CAE35626.1| histone-like DNA-binding protein [Bordetella bronchiseptica RB50]
          Length = 93

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++T+ DL+ ++S E G SR+D+   V  L + I +  + GE   +     F   Q+ +R 
Sbjct: 2  SLTKKDLIATLSYETGFSRRDTENMVDVLTSTISEQLIAGEEFTLPGVGKFSTSQRAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QT + V+I     V F AS  LK ++
Sbjct: 62 GRNPQTGEPVEIAASVAVKFSASKTLKDQV 91


>gi|167469217|ref|ZP_02333921.1| integration host factor, alpha subunit [Yersinia pestis FV-1]
          Length = 98

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 43/76 (56%)

Query: 18 FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDP 77
           GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R GRN +T +++ I  
Sbjct: 16 LGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITA 75

Query: 78 RRVVVFKASSILKKRI 93
          RRVV F+    LK R+
Sbjct: 76 RRVVTFRPGQKLKSRV 91


>gi|89892939|ref|YP_516426.1| hypothetical protein DSY0193 [Desulfitobacterium hafniense Y51]
 gi|219666205|ref|YP_002456640.1| histone family protein DNA-binding protein [Desulfitobacterium
          hafniense DCB-2]
 gi|89332387|dbj|BAE81982.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536465|gb|ACL18204.1| histone family protein DNA-binding protein [Desulfitobacterium
          hafniense DCB-2]
          Length = 91

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 51/86 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV +++++  +S+KD+ + V  +F  I ++  + E +++  F TF VK +  R G
Sbjct: 1  MNKADLVAAVAEKAEVSKKDAEKAVNAVFASIEEALAKNEKVQLVGFGTFEVKDRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + + I   +V  FKA   LK
Sbjct: 61 RNPQTKEAIVIPASKVPGFKAGKALK 86


>gi|317120952|ref|YP_004100955.1| bacterial nucleoid protein Hbs [Thermaerobacter marianensis DSM
          12885]
 gi|315590932|gb|ADU50228.1| bacterial nucleoid protein Hbs [Thermaerobacter marianensis DSM
          12885]
          Length = 90

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +I+++ GL+RKDS + V      I ++  +GE + +  F TF V+ + +R G
Sbjct: 1  MNKPELVNAIAEKTGLNRKDSEKAVNAFVESISEALAKGEKVSLVGFGTFEVRTRQARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T Q + I   +V  FK    L++
Sbjct: 61 RNPRTGQTLTIPAAKVPAFKPGKQLRE 87


>gi|218666994|ref|YP_002426010.1| integration host factor, alpha subunit, putative
          [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519207|gb|ACK79793.1| integration host factor, alpha subunit, putative
          [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 107

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 49/89 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+ D+   + +  G +   + +FV   F  +  + +    +K+S F  F V+ K SR 
Sbjct: 2  TITKKDVANHLWEVGGWTHPQAEQFVDAFFEHMRAAIITESELKLSGFGRFTVRAKSSRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T Q  +I  RRVV F AS++L+ +
Sbjct: 62 GRNPKTGQPYEIKARRVVTFSASALLRAK 90


>gi|51894365|ref|YP_077056.1| non-specific DNA-binding protein [Symbiobacterium thermophilum
          IAM 14863]
 gi|51858054|dbj|BAD42212.1| non-specific DNA-binding protein [Symbiobacterium thermophilum
          IAM 14863]
          Length = 89

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLV S++++ GL++KD+ + +  +   I ++  +G+ + +  F TF V+ + +R G
Sbjct: 1  MNKQDLVASVAEKSGLTKKDAEKALNAVVESIKEALKKGDKVSLVGFGTFEVRNRAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + +KI   +V  F+    LK+ +
Sbjct: 61 RNPQTGEPIKIPAGKVPAFRPGKELKESV 89


>gi|229193754|ref|ZP_04320694.1| DNA-binding protein HU [Bacillus cereus ATCC 10876]
 gi|228589726|gb|EEK47605.1| DNA-binding protein HU [Bacillus cereus ATCC 10876]
          Length = 93

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K ++++  L++KD+      + + I ++   GE ++I  F TF V+++ +R G
Sbjct: 4  MNKTELTKVVAEKAELTQKDAAAATQAVLDTITNALANGEKVQILGFGTFEVRERSARTG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +   FKA   LK+ +
Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKELKEAV 92


>gi|254488430|ref|ZP_05101635.1| integration host factor, beta subunit [Roseobacter sp. GAI101]
 gi|214045299|gb|EEB85937.1| integration host factor, beta subunit [Roseobacter sp. GAI101]
          Length = 94

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L ++D  R V T+F EI  +   G+ +++  F  F VK++ SRV
Sbjct: 1  MIRSELIQKIADDNPHLYQRDVERIVNTIFEEITSAMSAGDRVELRGFGAFSVKKRDSRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRL 90


>gi|303327861|ref|ZP_07358301.1| integration host factor, beta subunit [Desulfovibrio sp.
          3_1_syn3]
 gi|302862222|gb|EFL85156.1| integration host factor, beta subunit [Desulfovibrio sp.
          3_1_syn3]
          Length = 91

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K++++E  +   D++  V T  + +  S + GE I+I  F +F +K+ G   G
Sbjct: 1  MNKSELIKALAEETNIPFDDASLVVNTFIDAMKKSLIAGERIEIRGFGSFKIKEYGGYAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + V + P+R+  F+A   LK+ I
Sbjct: 61 RNPKTGESVSVIPKRLPFFRAGKELKEFI 89


>gi|228911916|ref|ZP_04075657.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 200]
 gi|228924999|ref|ZP_04088129.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228834662|gb|EEM80171.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228847725|gb|EEM92638.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 200]
          Length = 93

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K ++++  L++KD+      L + I ++   G+ ++I  F TF V+++ +R G
Sbjct: 4  MNKTELTKVVAEKAELTQKDAAAATQALLDTITNALANGDKVQILGFGTFEVRERSARTG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +   FKA   LK+ +
Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKELKEAV 92


>gi|92114165|ref|YP_574093.1| histone-like DNA-binding protein [Chromohalobacter salexigens DSM
          3043]
 gi|91797255|gb|ABE59394.1| histone-like DNA-binding protein [Chromohalobacter salexigens DSM
          3043]
          Length = 90

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I+    + +  + R +  + + + DS  +G+++ +  F TF VK++ +R G
Sbjct: 1  MNKSELIEAIAASADIPKAAAGRALDAMVDTVTDSLKKGDSVALVGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT Q ++I   +V  FKA   LK  +
Sbjct: 61 RNPQTGQTIEISAAKVPTFKAGKALKDSV 89


>gi|254501804|ref|ZP_05113955.1| integration host factor, beta subunit [Labrenzia alexandrii
          DFL-11]
 gi|222437875|gb|EEE44554.1| integration host factor, beta subunit [Labrenzia alexandrii
          DFL-11]
          Length = 99

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I+++   L ++D    V  + +EI ++ +RG+ +++  F  F VK + +R+
Sbjct: 1  MIKSELVQHIAEQNPHLYQRDVENIVNAILDEITEALMRGDRVELRGFGAFSVKNRPARI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T Q+V++D + V  FK    ++ R+ D
Sbjct: 61 GRNPRTGQKVEVDEKHVPFFKTGKEMRIRLND 92


>gi|119505267|ref|ZP_01627342.1| integration host factor subunit alpha [marine gamma
          proteobacterium HTCC2080]
 gi|119458958|gb|EAW40058.1| integration host factor subunit alpha [marine gamma
          proteobacterium HTCC2080]
          Length = 104

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 49/90 (54%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S++   + +E GL+++++   V   F EI       E +K+S F  F ++ K  R 
Sbjct: 3  ALTKSEMADKLFEELGLNKREAKELVEQFFEEIRICLENNEQVKLSGFGNFDLRDKRQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + + I  RRVV F+    LK ++
Sbjct: 63 GRNPKTGEAIPISARRVVTFRPGQKLKAKV 92


>gi|56551140|ref|YP_161979.1| histone family protein DNA-binding protein [Zymomonas mobilis
          subsp. mobilis ZM4]
 gi|241761496|ref|ZP_04759584.1| histone family protein DNA-binding protein [Zymomonas mobilis
          subsp. mobilis ATCC 10988]
 gi|260753209|ref|YP_003226102.1| histone family protein DNA-binding protein [Zymomonas mobilis
          subsp. mobilis NCIMB 11163]
 gi|56542714|gb|AAV88868.1| histone family protein DNA-binding protein [Zymomonas mobilis
          subsp. mobilis ZM4]
 gi|241374403|gb|EER63900.1| histone family protein DNA-binding protein [Zymomonas mobilis
          subsp. mobilis ATCC 10988]
 gi|258552572|gb|ACV75518.1| histone family protein DNA-binding protein [Zymomonas mobilis
          subsp. mobilis NCIMB 11163]
          Length = 91

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  +DLV  I+   GL++ D+ + V  +F+ I D+AV GE I ++ F  F VK   +R G
Sbjct: 1  MNSNDLVDRIASGQGLTKTDAKKLVDAVFSTIVDAAVAGEEIALNGFGKFKVKHSAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T QE++I     + F ++  +K R+
Sbjct: 61 HNPATLQEIEIPASNRLTFTSAKAVKDRL 89


>gi|304405810|ref|ZP_07387468.1| histone family protein DNA-binding protein [Paenibacillus
          curdlanolyticus YK9]
 gi|304345053|gb|EFM10889.1| histone family protein DNA-binding protein [Paenibacillus
          curdlanolyticus YK9]
          Length = 90

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+ + GL+++D    +     E+ D+   G+ +++  F TF  +++  R G
Sbjct: 1  MNKTDLINNIATKSGLTKRDVEAVLNGFLGEVTDALASGDKVQLIGFGTFETRKRSGRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I   +V  FKA + LK  I
Sbjct: 61 RNPQTGNPIEIAESKVPAFKAGNKLKDAI 89


>gi|194595686|gb|ACF77129.1| bacterial nucleoid DNA-binding protein [Azospirillum brasilense]
          Length = 90

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++   GLS+ D+T+ V  +F+ I DS   GE +++  F TF V ++ +  G
Sbjct: 1  MNKNDLVAHVADAVGLSKTDATKAVDAIFDGIADSLKNGEEVRLVGFGTFAVSERAASEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +++ I   +   FK    LK
Sbjct: 61 RNPRTGEKIAIPASKQPKFKPGKTLK 86


>gi|315641242|ref|ZP_07896319.1| DNA-binding protein HU [Enterococcus italicus DSM 15952]
 gi|315483009|gb|EFU73528.1| DNA-binding protein HU [Enterococcus italicus DSM 15952]
          Length = 91

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 49/84 (58%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++L++ ++    L++KD+T  V  +F+ I ++   GE +++  F  F V+ +  R GRN
Sbjct: 4  KAELIEKVAAATDLTKKDATLAVDAVFSSIQEALANGEKVQLIGFGNFEVRTRAERKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E+KI   +V  FK    LK
Sbjct: 64 PQTGEEIKIPASKVPAFKPGKALK 87


>gi|313902512|ref|ZP_07835913.1| bacterial nucleoid protein Hbs [Thermaerobacter subterraneus DSM
          13965]
 gi|313467198|gb|EFR62711.1| bacterial nucleoid protein Hbs [Thermaerobacter subterraneus DSM
          13965]
          Length = 90

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +I+++ GL++KDS R V      I ++  RG+ + +  F TF V+ + +R G
Sbjct: 1  MNKPELVNAIAEKTGLNKKDSERAVNAFVESISEALARGDKVSLVGFGTFEVRTRQARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T Q + I   +V  FK    L+
Sbjct: 61 RNPRTGQTLTIPAAKVPAFKPGKQLR 86


>gi|206972956|ref|ZP_03233878.1| DNA-binding protein HU 1 [Bacillus cereus AH1134]
 gi|206731840|gb|EDZ49040.1| DNA-binding protein HU 1 [Bacillus cereus AH1134]
          Length = 90

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L K ++++  L++KD+      L + I ++   GE ++I  F TF V+++ +R G
Sbjct: 1  MNKTKLTKVVAEKAELTQKDAAAATQALLDTITNALATGEKVQILGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +   FKA   LK+ +
Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELKEAV 89


>gi|228918712|ref|ZP_04082132.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228840929|gb|EEM86151.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 93

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K I+++  L++KD+      + + I ++   G+ ++I  F TF V+++  R G
Sbjct: 4  MNKTELTKVIAEKAELTQKDAATATQAVLDTITNALANGDKVQILGFGTFEVRERSERTG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FKA   LK+ +
Sbjct: 64 RNPQTGEEMQIAASKVPAFKAGKELKEAV 92


>gi|307544939|ref|YP_003897418.1| DNA-binding protein HU-beta [Halomonas elongata DSM 2581]
 gi|307216963|emb|CBV42233.1| K03530 DNA-binding protein HU-beta [Halomonas elongata DSM 2581]
          Length = 90

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I+    + +  ++R +  + + + DS  +G+++ +  F TF VK++ +R G
Sbjct: 1  MNKSELIEAIAASADIPKAAASRALDAMVDAVADSLKKGDSVSLVGFGTFTVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I   +V  FKA   LK  +
Sbjct: 61 RNPQTGEPIQISAAKVPSFKAGKALKDSV 89


>gi|332798190|ref|YP_004459689.1| histone family protein DNA-binding protein [Tepidanaerobacter sp.
          Re1]
 gi|332695925|gb|AEE90382.1| histone family protein DNA-binding protein [Tepidanaerobacter sp.
          Re1]
          Length = 91

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++ GL++KDS + +      + ++ V+ + +++  F TF V+++ SR G
Sbjct: 1  MNKAELITAMAEKSGLTKKDSEKALNAFIESVEEALVKRDKVQLVGFGTFEVRERSSRKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I    +  FKA   LK  I
Sbjct: 61 RNPQTGEEIDIPAASIPAFKAGKALKDSI 89


>gi|172057810|ref|YP_001814270.1| histone family protein DNA-binding protein [Exiguobacterium
          sibiricum 255-15]
 gi|171990331|gb|ACB61253.1| histone family protein DNA-binding protein [Exiguobacterium
          sibiricum 255-15]
          Length = 90

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 54/86 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++++ ++ GL++KD T+ V + F  I ++   GE +++  F  F V+++ +R G
Sbjct: 1  MNKTELIQAVVEKSGLTKKDVTKVVESTFESITETLQSGEKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T ++++I   +V  FK    LK
Sbjct: 61 RNPRTKEDIEIPASKVPAFKPGKALK 86


>gi|288553957|ref|YP_003425892.1| DNA-binding protein HU [Bacillus pseudofirmus OF4]
 gi|288545117|gb|ADC49000.1| DNA-binding protein HU, Hbsu-like protein [Bacillus pseudofirmus
          OF4]
          Length = 90

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 51/86 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  +++   LS+KD+   V  +F+ I ++  +GE +++  F  F V+++ +R G
Sbjct: 1  MNKTELINEVAERTQLSKKDAGNAVNEVFDVISETMSKGETVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+ I   +   FKA   LK
Sbjct: 61 RNPQTGEEIDIPATKTPAFKAGKQLK 86


>gi|159899915|ref|YP_001546162.1| histone family protein DNA-binding protein [Herpetosiphon
          aurantiacus ATCC 23779]
 gi|159892954|gb|ABX06034.1| histone family protein DNA-binding protein [Herpetosiphon
          aurantiacus ATCC 23779]
          Length = 92

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 53/89 (59%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +SDL+K+I+++ GLS+  + + V  L   I ++   G+ + ++ F TF V+++ +R G N
Sbjct: 3  QSDLIKAIAEKSGLSQAQAGKAVNALLESITEALAAGDRVVLTGFGTFEVRERQARTGFN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           +T + ++I   R   F A S LKK + +
Sbjct: 63 PKTREPLEIPATRAPAFSAGSNLKKAVTE 91


>gi|332653755|ref|ZP_08419499.1| DNA-binding protein HU [Ruminococcaceae bacterium D16]
 gi|332516841|gb|EGJ46446.1| DNA-binding protein HU [Ruminococcaceae bacterium D16]
          Length = 91

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 51/86 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ +  LS+KD+   +T     I ++  R E +++  F +F VK + +RVG
Sbjct: 1  MNKTELINAVADKTQLSKKDAEAAITATVEAIAEALTREEKVQLVGFGSFEVKTRAARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T  E++I   +  VFKA   LK
Sbjct: 61 RNPKTGTEIEIPQTKTPVFKAGKALK 86


>gi|255318959|ref|ZP_05360184.1| DNA-binding protein HU-beta [Acinetobacter radioresistens SK82]
 gi|262378305|ref|ZP_06071462.1| integration host factor, beta subunit [Acinetobacter
          radioresistens SH164]
 gi|255303976|gb|EET83168.1| DNA-binding protein HU-beta [Acinetobacter radioresistens SK82]
 gi|262299590|gb|EEY87502.1| integration host factor, beta subunit [Acinetobacter
          radioresistens SH164]
          Length = 90

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+++ GLS+ D+ + +      I ++  +G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAEKGGLSKTDAGKALDATIASITEALKQGDTVTLVGFGTFGVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E++I   +V  FKA   LK  +
Sbjct: 61 RNPKTGEELQIKASKVPSFKAGKGLKDSV 89


>gi|289450416|ref|YP_003475021.1| DNA-binding protein HU [Clostridiales genomosp. BVAB3 str.
          UPII9-5]
 gi|289184963|gb|ADC91388.1| DNA-binding protein HU [Clostridiales genomosp. BVAB3 str.
          UPII9-5]
          Length = 91

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          R+DL+ SI+K   L++K S   +  + N I D+ ++G+ + ++ F TF V+ + +R GRN
Sbjct: 3  RNDLIASIAKAANLTKKSSEEALDAVLNTISDALIKGDKVILTGFGTFEVRARAARKGRN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
            T  E+ I   +   FK    LK+++
Sbjct: 63 PATKTEIMIPASKSPAFKPGKRLKEQV 89


>gi|225017256|ref|ZP_03706448.1| hypothetical protein CLOSTMETH_01182 [Clostridium methylpentosum
          DSM 5476]
 gi|224950031|gb|EEG31240.1| hypothetical protein CLOSTMETH_01182 [Clostridium methylpentosum
          DSM 5476]
          Length = 91

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+SDL+ +++ +  LS+KD+ + V ++ + I ++ V G+ +++  F TF V+++ +R G
Sbjct: 1  MTKSDLINAVAAKAELSKKDAEKAVLSMIDAITEALVEGDKVQLVGFGTFEVRERKARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN    + + I    V  FKA   LK  +
Sbjct: 61 RNPLNGEPMHIPATTVPAFKAGKALKDAV 89


>gi|149376912|ref|ZP_01894667.1| Bacterial nucleoid DNA-binding protein [Marinobacter algicola
          DG893]
 gi|149358804|gb|EDM47273.1| Bacterial nucleoid DNA-binding protein [Marinobacter algicola
          DG893]
          Length = 90

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 49/87 (56%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L  +++ + GLSR  ++  +T   ++I  +A RGE   +  F TF+++ + +R GRN
Sbjct: 3  KPELAAAVADKTGLSRDKASEVITAFTDQISAAAARGEDTTLIGFGTFNIRSREARDGRN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT   +KI   + V FKA   LK  I
Sbjct: 63 PQTGATIKIPASKTVGFKAGKALKDSI 89


>gi|85859096|ref|YP_461298.1| integration host factor beta-subunit [Syntrophus aciditrophicus
          SB]
 gi|85722187|gb|ABC77130.1| integration host factor beta-subunit [Syntrophus aciditrophicus
          SB]
          Length = 93

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++++SK+ GL+ K +   +  LF    +   +G  I+I  F +F V+   +  G
Sbjct: 1  MNKSELIEALSKKEGLTEKKAIEVINLLFKGFTEELQKGGRIEIRGFGSFVVRNYNAYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + +K+ P+R+  FK    LK+R+
Sbjct: 61 RNPKTGKNIKVSPKRLPFFKVGKELKERV 89


>gi|116623390|ref|YP_825546.1| histone family protein DNA-binding protein [Candidatus Solibacter
          usitatus Ellin6076]
 gi|116226552|gb|ABJ85261.1| histone family protein DNA-binding protein [Candidatus Solibacter
          usitatus Ellin6076]
          Length = 112

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 52/86 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DL++ +S+   ++RK+S   V  +F+ I  S   G+ I+I  F +F  +Q+  R+G
Sbjct: 1  MTKADLIEEVSRVVEMTRKESEVIVEAIFDSIVRSLRTGDKIEIRGFGSFRTRQRQPRIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   V++  +++  FK S  LK
Sbjct: 61 RNPKTGARVEVPAKKIPYFKPSKELK 86


>gi|88703270|ref|ZP_01100986.1| Histone-like bacterial DNA-binding protein [Congregibacter
           litoralis KT71]
 gi|88701984|gb|EAQ99087.1| Histone-like bacterial DNA-binding protein [Congregibacter
           litoralis KT71]
          Length = 115

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +SDL+ +I+    +++ D+ R +  + + I D+  +G+ + +  F TF VK + +R G
Sbjct: 25  VNKSDLIDAIASAADINKSDAGRALDAVVDSITDTLKKGDQVSLVGFGTFSVKHRAARDG 84

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN QT + +KI    V  FKA   LK  +
Sbjct: 85  RNPQTGETIKIKASNVPGFKAGKALKDAV 113


>gi|296112837|ref|YP_003626775.1| DNA-binding protein HU-beta [Moraxella catarrhalis RH4]
 gi|295920531|gb|ADG60882.1| DNA-binding protein HU-beta [Moraxella catarrhalis RH4]
 gi|326561078|gb|EGE11443.1| DNA-binding protein HU-beta [Moraxella catarrhalis 7169]
 gi|326561504|gb|EGE11848.1| DNA-binding protein HU-beta [Moraxella catarrhalis 46P47B1]
 gi|326565372|gb|EGE15550.1| DNA-binding protein HU-beta [Moraxella catarrhalis 12P80B1]
 gi|326566699|gb|EGE16838.1| DNA-binding protein HU-beta [Moraxella catarrhalis 103P14B1]
 gi|326567537|gb|EGE17652.1| DNA-binding protein HU-beta [Moraxella catarrhalis BC1]
 gi|326569385|gb|EGE19445.1| DNA-binding protein HU-beta [Moraxella catarrhalis BC8]
 gi|326571416|gb|EGE21431.1| DNA-binding protein HU-beta [Moraxella catarrhalis BC7]
 gi|326575302|gb|EGE25230.1| DNA-binding protein HU-beta [Moraxella catarrhalis CO72]
 gi|326576613|gb|EGE26520.1| DNA-binding protein HU-beta [Moraxella catarrhalis 101P30B1]
 gi|326577520|gb|EGE27400.1| DNA-binding protein HU-beta [Moraxella catarrhalis O35E]
          Length = 90

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV SI++  GL+++ + + V      +  +  RG+ + +  F TF VK++ +R+G
Sbjct: 1  MNKSELVDSIAQSAGLTKEQAAKAVNAFTESVQGALQRGDDVVLVGFGTFSVKERAARMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + ++I   +V  FKA  +LK+ +
Sbjct: 61 RNPKTGEAIQIAASKVPSFKAGKVLKESV 89


>gi|323705550|ref|ZP_08117124.1| histone family protein DNA-binding protein [Thermoanaerobacterium
          xylanolyticum LX-11]
 gi|323535027|gb|EGB24804.1| histone family protein DNA-binding protein [Thermoanaerobacterium
          xylanolyticum LX-11]
          Length = 92

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 52/86 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  I+++  L++KD+ + +    + + ++  +G+ +++  F TF V+++  R G
Sbjct: 2  VNKADLVTKIAEKSELTKKDAEKALNAFVDAVQEALKQGDKVQLVGFGTFEVRERAERKG 61

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+ I   +  VFKA   LK
Sbjct: 62 RNPQTKEEITIPASKAPVFKAGKALK 87


>gi|326204212|ref|ZP_08194072.1| histone family protein DNA-binding protein [Clostridium
          papyrosolvens DSM 2782]
 gi|325985723|gb|EGD46559.1| histone family protein DNA-binding protein [Clostridium
          papyrosolvens DSM 2782]
          Length = 91

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+ SI+ + GL++K+S   +    + + ++   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSDLINSIATKSGLNKKNSEAALNAFISSVEETLKAGDKVTLVGFGTFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +  VFKA   LK  +
Sbjct: 61 RNPQTKEEITIPASKAPVFKAGKGLKDNV 89


>gi|311696395|gb|ADP99268.1| histone-like bacterial DNA-binding protein [marine bacterium
          HP15]
          Length = 90

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 51/87 (58%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L  +I+   GL+R+ ++  +T   +++  +A RGE + +  F TF+++ + +R GRN
Sbjct: 3  KPELAAAIADRTGLTREKASEVITAFTDQVSAAASRGEDVTLIGFGTFNIRSREARDGRN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT + ++I   + V FKA   LK  I
Sbjct: 63 PQTGETIRIPASKTVGFKAGKALKDEI 89


>gi|42519018|ref|NP_964948.1| DNA-binding protein HU [Lactobacillus johnsonii NCC 533]
 gi|227889872|ref|ZP_04007677.1| DNA-binding protein HU [Lactobacillus johnsonii ATCC 33200]
 gi|268319592|ref|YP_003293248.1| DNA-binding protein HU [Lactobacillus johnsonii FI9785]
 gi|41583305|gb|AAS08914.1| DNA-binding protein HU [Lactobacillus johnsonii NCC 533]
 gi|227849736|gb|EEJ59822.1| DNA-binding protein HU [Lactobacillus johnsonii ATCC 33200]
 gi|262397967|emb|CAX66981.1| DNA-binding protein HU [Lactobacillus johnsonii FI9785]
 gi|329667447|gb|AEB93395.1| DNA-binding protein HU [Lactobacillus johnsonii DPC 6026]
          Length = 91

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV  ++ +  L++K+    V  +FN I +   +GE +++  F TF V+ + +R GRN
Sbjct: 4  KAELVSEVAAKTDLTKKEVAAAVDAIFNSIQEDLAKGEKVQLIGFGTFEVRHRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT  E++I   +V  FK    LK
Sbjct: 64 PQTGAEIEIPASKVPAFKPGKALK 87


>gi|220929825|ref|YP_002506734.1| histone family protein DNA-binding protein [Clostridium
          cellulolyticum H10]
 gi|220000153|gb|ACL76754.1| histone family protein DNA-binding protein [Clostridium
          cellulolyticum H10]
          Length = 91

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+ SI+ + GL++K+S   +    + + ++   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSDLINSIATKSGLNKKNSEAALNAFISSVEETLKAGDKVTLVGFGTFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +  VFKA   LK  +
Sbjct: 61 RNPQTKEEITIPASKAPVFKAGKGLKDNV 89


>gi|332702002|ref|ZP_08422090.1| histone family protein DNA-binding protein [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552151|gb|EGJ49195.1| histone family protein DNA-binding protein [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 120

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 52/86 (60%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           ++KT+T++++V  I ++  L+R +    V TL + +  S  R  ++ IS F  F    K 
Sbjct: 21  LNKTLTKAEIVDYIYEKTDLNRAEIKAHVETLLDIMKQSIKRDHSLLISGFGKFEAYDKR 80

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKAS 86
           +R GRN QTN+ + + PR+VVVF+ S
Sbjct: 81  ARKGRNPQTNETITLPPRKVVVFRLS 106


>gi|229170534|ref|ZP_04298182.1| DNA-binding protein HU [Bacillus cereus AH621]
 gi|228612883|gb|EEK70060.1| DNA-binding protein HU [Bacillus cereus AH621]
          Length = 93

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K ++++  L++KD+      + N I ++    E ++I  F TF V+++ +R G
Sbjct: 4  MNKAELTKMVAEKAELTQKDAAAATQAVLNAITNALANEEKVQILGFGTFEVRERSARTG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +   FKA   LK+ +
Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKELKEAV 92


>gi|298529692|ref|ZP_07017095.1| histone family protein DNA-binding protein [Desulfonatronospira
          thiodismutans ASO3-1]
 gi|298511128|gb|EFI35031.1| histone family protein DNA-binding protein [Desulfonatronospira
          thiodismutans ASO3-1]
          Length = 90

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 54/86 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  ++++  L++ DS + +    + + D+ V+   + ++ F TF V+++ SR G
Sbjct: 1  MTKADLVSKMAEKASLTKADSEKALNAFLDSVQDTLVKEGKLTLTGFGTFAVEERKSRNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E+KI   +VV F+   ILK
Sbjct: 61 RNPRTGEEIKIPACKVVKFRPGKILK 86


>gi|212704733|ref|ZP_03312861.1| hypothetical protein DESPIG_02796 [Desulfovibrio piger ATCC
          29098]
 gi|212671860|gb|EEB32343.1| hypothetical protein DESPIG_02796 [Desulfovibrio piger ATCC
          29098]
          Length = 95

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQK 59
          M KT+T++D+V+ I +    +R D    V  L  EI  SA++ + A+ IS F  F    K
Sbjct: 1  MKKTLTKADIVERIYESTDKNRVDVKNVVEKLL-EIMKSAIKKDNALLISGFGKFEAYDK 59

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKAS 86
           SR GRN QT++ + + PR+VVVF+ S
Sbjct: 60 ASRKGRNPQTDEAITLPPRKVVVFRLS 86


>gi|120554755|ref|YP_959106.1| histone family protein DNA-binding protein [Marinobacter
          aquaeolei VT8]
 gi|120324604|gb|ABM18919.1| bacterial nucleoid protein HU beta subunit [Marinobacter
          aquaeolei VT8]
 gi|311695073|gb|ADP97946.1| histone-like bacterial DNA-binding protein [marine bacterium
          HP15]
          Length = 90

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I++   +S+  + R +  + N I  +  +G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAESADISKAAAGRALDAMTNSITGALKKGDQVTLIGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E+KI   +V  FKA   LK  +
Sbjct: 61 RNPQTGAEIKIPASKVPGFKAGKALKDAV 89


>gi|258542769|ref|YP_003188202.1| integration host factor DNA-binding subunit beta [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633847|dbj|BAH99822.1| integration host factor DNA-binding beta subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636906|dbj|BAI02875.1| integration host factor DNA-binding beta subunit [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639959|dbj|BAI05921.1| integration host factor DNA-binding beta subunit [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256643015|dbj|BAI08970.1| integration host factor DNA-binding beta subunit [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256646070|dbj|BAI12018.1| integration host factor DNA-binding beta subunit [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256649123|dbj|BAI15064.1| integration host factor DNA-binding beta subunit [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256652110|dbj|BAI18044.1| integration host factor DNA-binding beta subunit [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256655167|dbj|BAI21094.1| integration host factor DNA-binding beta subunit [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 104

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 1/104 (0%)

Query: 5   ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +TRS+L+ ++  K   L  K++TR V  +F  I  S   G  +++  F  F VK++  R+
Sbjct: 1   MTRSELITALMQKNPHLQLKEATRLVNIVFGTITSSLAEGSRVELRGFGAFSVKERDPRI 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           GRN +T  +VK+  + V  FK    L +R+   + G K ++  V
Sbjct: 61  GRNPKTGVQVKVGKKLVPFFKTGKELHQRLNKPVAGSKRSRSSV 104


>gi|229074054|ref|ZP_04207110.1| DNA-binding protein HU [Bacillus cereus F65185]
 gi|229194173|ref|ZP_04321032.1| DNA-binding protein HU [Bacillus cereus ATCC 10876]
 gi|228589314|gb|EEK47274.1| DNA-binding protein HU [Bacillus cereus ATCC 10876]
 gi|228709071|gb|EEL61189.1| DNA-binding protein HU [Bacillus cereus F65185]
          Length = 93

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K ++++  L++KD+      L + I ++   GE ++I  F TF V+++ +R G
Sbjct: 4  MNKTELTKVVAEKAELTQKDAAAATQALLDTITNALATGEKVQILGFGTFEVRERSARTG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +   FKA    K+ +
Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKEFKEAV 92


>gi|332529386|ref|ZP_08405347.1| integration host factor subunit beta [Hylemonella gracilis ATCC
          19624]
 gi|332041184|gb|EGI77549.1| integration host factor subunit beta [Hylemonella gracilis ATCC
          19624]
          Length = 100

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDLV++++  F  L+ +D+   V  + + + D+ VRG  I+I  F +F + ++  R+
Sbjct: 1  MTRSDLVEALAARFEQLTHRDAESAVKAILDAMNDALVRGRRIEIRGFGSFSINRRPPRM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V I  +RV  FK    L++ +
Sbjct: 61 GRNPRSGESVAIPEKRVPHFKPGKALREAV 90


>gi|116515025|ref|YP_802654.1| hypothetical protein BCc_084 [Buchnera aphidicola str. Cc (Cinara
          cedri)]
 gi|122285579|sp|Q057Y8|IHFA_BUCCC RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|116256879|gb|ABJ90561.1| integration host factor alpha-subunit [Buchnera aphidicola str.
          Cc (Cinara cedri)]
          Length = 104

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 51/90 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++   +  +  LS+++    V   F E+  S   GE++K+S F  F+++ K  R 
Sbjct: 2  VLTKAEISDYLFHKLELSKQNIKDLVEIFFEEVRKSLELGESVKLSGFGNFYLRDKKQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + + I  RRVVVFK    L+ R+
Sbjct: 62 GRNPKTGEYIPISARRVVVFKPGQKLRSRV 91


>gi|225573957|ref|ZP_03782602.1| hypothetical protein RUMHYD_02051 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038795|gb|EEG49041.1| hypothetical protein RUMHYD_02051 [Blautia hydrogenotrophica DSM
           10507]
          Length = 102

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 54/93 (58%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+ +++LV +++KE  L++KD    + +  + + D   +GE +++  F TF V ++ +R 
Sbjct: 10  TMNKTELVAAMAKETKLAKKDVEAVLKSFIDVVSDELKKGEKVQLVGFGTFEVSKRAARE 69

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           GRN QT + +KI   +   FKA   LK  + ++
Sbjct: 70  GRNPQTGETMKISASKAPKFKAGKALKDLVNEE 102


>gi|168335347|ref|ZP_02693443.1| Bacterial nucleoid DNA-binding protein [Epulopiscium sp. 'N.t.
          morphotype B']
          Length = 93

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV S++++ GL++KD+ + +      + D    G  I++  F TF V  + +RVG
Sbjct: 1  MNKTELVASMAEKSGLTKKDTEKALKAFEESVMDELKSGGKIQLVGFGTFEVTNRKARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +TN+E+ I    V  FKA   LK
Sbjct: 61 RNPKTNEEIHIPESNVPKFKAGKALK 86


>gi|156564019|ref|YP_001429759.1| DNA-binding HU protein [Bacillus phage 0305phi8-36]
 gi|154622716|gb|ABS83596.1| DNA-binding HU protein [Bacillus phage 0305phi8-36]
          Length = 111

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 51/86 (59%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L+  +++   +S+KD+T+ V  +F  I ++   G  +++  F TF  + + +R G
Sbjct: 22  MNKTELINHVAETAEISKKDATKAVDAVFGGITNALAEGNKVQLIGFGTFETRDRAARKG 81

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILK 90
           RN QT +E++I   +V  FKA   LK
Sbjct: 82  RNPQTGEEIEIAATKVPAFKAGKELK 107


>gi|117924551|ref|YP_865168.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
 gi|117926183|ref|YP_866800.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
 gi|117608307|gb|ABK43762.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
 gi|117609939|gb|ABK45394.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
          Length = 91

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 49/83 (59%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          ++L K+++++  +S+ D+ + +   F  I D+   GE +++  F TF + ++ +R GRN 
Sbjct: 4  AELKKAVAEKAEMSQSDANQVIKACFEAISDALGNGETVQLPGFGTFSLGERAARTGRNP 63

Query: 68 QTNQEVKIDPRRVVVFKASSILK 90
          QT  E++I   + V FKA   LK
Sbjct: 64 QTGAEIQIAASKSVKFKAGKALK 86


>gi|108759553|ref|YP_633781.1| integration host factor subunit beta [Myxococcus xanthus DK 1622]
 gi|108463433|gb|ABF88618.1| integration host factor, beta subunit [Myxococcus xanthus DK
          1622]
          Length = 117

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+  +  + G+++K +   + T+F  + D+  RGE I+I     FHVK      G
Sbjct: 1  MLKSDLINILVAKRGVTQKQAEATIETIFESMKDALCRGENIEIRGLGAFHVKNYQGYQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T Q + + P+R ++F+    L+ R+
Sbjct: 61 RNPKTGQVIPVKPKRGLLFRTGKELRDRV 89


>gi|14194853|sp|Q9F297|IHFA_NEIGO RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|9965582|gb|AAG10094.1| IfhB [Neisseria gonorrhoeae]
          Length = 96

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 4  TITRSDLVK-SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T+T+++L    + K   +++  +   V   F EI  +   GE IKIS F  F ++ K  R
Sbjct: 2  TLTKAELADILVDKVSNVTKNSAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN +T +EV I  RRVV F AS  LK
Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLK 89


>gi|328953678|ref|YP_004371012.1| histone family protein DNA-binding protein [Desulfobacca
          acetoxidans DSM 11109]
 gi|328454002|gb|AEB09831.1| histone family protein DNA-binding protein [Desulfobacca
          acetoxidans DSM 11109]
          Length = 95

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  ++ +I+ + GLS++++   V  + + I ++  + E + IS F  F V+ K  R 
Sbjct: 2  ALTKEKVINAINLKLGLSKQEARSAVERVLHLIKEALAQEEDVLISGFGKFTVRSKNPRR 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QT +++ +  R+VVVFK S +L+ RI
Sbjct: 62 GRNPQTKEDLILRARKVVVFKTSGVLRHRI 91


>gi|326803714|ref|YP_004321532.1| DNA-binding protein HU-beta [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651370|gb|AEA01553.1| DNA-binding protein HU-beta [Aerococcus urinae ACS-120-V-Col10a]
          Length = 92

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 50/85 (58%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           ++DLV+ +++  G S+K+    V  +F+ I +    GE ++I  F  F V+++ +R GR
Sbjct: 3  NKADLVQKVAESTGESKKNVQPVVDAVFSSIENFLADGENVQIIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90
          N QT +E++I   +V  FKA   LK
Sbjct: 63 NPQTGEEIQIPASKVPAFKAGKGLK 87


>gi|218779503|ref|YP_002430821.1| histone family protein DNA-binding protein [Desulfatibacillum
          alkenivorans AK-01]
 gi|218760887|gb|ACL03353.1| histone family protein DNA-binding protein [Desulfatibacillum
          alkenivorans AK-01]
          Length = 97

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 48/96 (50%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++ +V+ I  + GL  K     V  L   I  S   G+ + IS F  F V+ K  R 
Sbjct: 2  ALTKAQIVEEIHNQLGLPAKQCATMVEDLLEIIKSSLENGDDVLISGFGKFRVRDKSQRR 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN  T   + +D R+VV F  S +L+ RI  + +G
Sbjct: 62 GRNPATGDSIILDARKVVTFTCSGVLRDRINSNEKG 97


>gi|315499460|ref|YP_004088263.1| histone family protein DNA-binding protein [Asticcacaulis
          excentricus CB 48]
 gi|315417472|gb|ADU14112.1| histone family protein DNA-binding protein [Asticcacaulis
          excentricus CB 48]
          Length = 91

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          SDL+  I+ E G+++  +   V T+F  I ++AV G+ + + SF  F V+ K +R GRN 
Sbjct: 4  SDLIDKIATEHGVTKVAAKAIVDTVFGSIVEAAVLGQEVNLPSFGKFKVQDKPAREGRNP 63

Query: 68 QTNQEVKIDPRRVVVFKASSILKKRI 93
           T   ++I   + +VF+    LK R+
Sbjct: 64 STGATIQIAASKKLVFQPGKALKDRL 89


>gi|218886875|ref|YP_002436196.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris str. 'Miyazaki F']
 gi|218757829|gb|ACL08728.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris str. 'Miyazaki F']
          Length = 91

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 52/86 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV+++++E  L  +D+T  V T F+ + D+ + G+ ++I  F +F +K      G
Sbjct: 1  MNKSELVRALAEEHELPVEDATVVVNTFFDCVRDALLEGDRVEIRGFGSFKIKGYRGYKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   V + P+R+ VF+A   LK
Sbjct: 61 RNPKTGDSVAVPPKRLPVFRAGKELK 86


>gi|328545805|ref|YP_004305914.1| integration host factor subunit beta [polymorphum gilvum
          SL003B-26A1]
 gi|326415545|gb|ADZ72608.1| Integration host factor subunit beta [Polymorphum gilvum
          SL003B-26A1]
          Length = 101

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I+++   L ++D    V  + +EI ++ +RG+ +++  F  F VK + +RV
Sbjct: 1  MIKSELVQRIAEQNPHLYQRDVENIVNAILDEITEALMRGDRVELRGFGAFSVKNRPARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T Q+V +D + V  FK    +++R+
Sbjct: 61 GRNPRTGQKVDVDEKYVPFFKTGKEMRERL 90


>gi|312865869|ref|ZP_07726090.1| DNA-binding protein HU-alpha [Streptococcus downei F0415]
 gi|311098273|gb|EFQ56496.1| DNA-binding protein HU-alpha [Streptococcus downei F0415]
          Length = 91

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 48/84 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F+ I     +GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVDAVFSSIEGFLSKGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT  E+KI   +V  FKA   LK
Sbjct: 64 PQTGAEIKIAASKVPAFKAGKALK 87


>gi|304315774|ref|YP_003850919.1| histone family protein DNA-binding protein [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
 gi|302777276|gb|ADL67835.1| histone family protein DNA-binding protein [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
          Length = 91

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 52/86 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  I+++  L++KD+ + +    + + ++  +G+ +++  F TF V+++  R G
Sbjct: 1  MNKADLVTKIAEKSELTKKDAEKALNAFVDAVQEALKQGDKVQLVGFGTFEVRERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+ I   +  VFKA   LK
Sbjct: 61 RNPQTKEEITIPASKAPVFKAGKALK 86


>gi|222153394|ref|YP_002562571.1| DNA-binding protein HU [Streptococcus uberis 0140J]
 gi|222114207|emb|CAR42760.1| DNA-binding protein HU [Streptococcus uberis 0140J]
          Length = 91

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 48/84 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F+ I     +GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVDAVFSAIEGFLSKGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT  E+KI   +V  FKA   LK
Sbjct: 64 PQTGAEIKIAASKVPAFKAGKALK 87


>gi|212709200|ref|ZP_03317328.1| hypothetical protein PROVALCAL_00233 [Providencia alcalifaciens
          DSM 30120]
 gi|212688112|gb|EEB47640.1| hypothetical protein PROVALCAL_00233 [Providencia alcalifaciens
          DSM 30120]
          Length = 96

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L++ I+ E  +S+  + R V      +  S  +G+ + +  F TF+V+Q+ +R G
Sbjct: 6  VNKSQLIEKIAAEANISKAAAGRVVDAFVASVTTSLSKGDDVTLVGFGTFNVRQRAARTG 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+KI   +V  F+A   LK
Sbjct: 66 RNPQTGKEIKIAAAKVPAFRAGKGLK 91


>gi|83854722|ref|ZP_00948252.1| integration host factor beta subunit [Sulfitobacter sp. NAS-14.1]
 gi|83941245|ref|ZP_00953707.1| integration host factor beta subunit [Sulfitobacter sp. EE-36]
 gi|83842565|gb|EAP81732.1| integration host factor beta subunit [Sulfitobacter sp. NAS-14.1]
 gi|83847065|gb|EAP84940.1| integration host factor beta subunit [Sulfitobacter sp. EE-36]
          Length = 94

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L ++D  R V T+F EI  +   G+ +++  F  F VK++ +RV
Sbjct: 1  MIRSELIQKIADDNPHLYQRDVERIVNTIFEEITGAMSDGDRVELRGFGAFSVKKRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRL 90


>gi|152979637|ref|YP_001345266.1| histone family protein DNA-binding protein [Actinobacillus
          succinogenes 130Z]
 gi|150841360|gb|ABR75331.1| histone family protein DNA-binding protein [Actinobacillus
          succinogenes 130Z]
          Length = 91

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+    L++KD+   +    + I  S  +G+A+++  F TF V ++ +R+G
Sbjct: 1  MNKTDLIDAIASAASLTKKDAKAALEATLDAITASLKKGDAVQLIGFGTFKVNERKARIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E+KI   +   F A   LK  +
Sbjct: 61 RNPQTGAEIKIAASKAPAFVAGKALKDEV 89


>gi|58698807|ref|ZP_00373686.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58534682|gb|EAL58802.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 115

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 54/91 (59%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           +V  I++E GLS++DS   +  + +EI  S  +   +KISSF TF VK+K  R G    T
Sbjct: 16  IVGDINQEIGLSKEDSASIIDDILDEIKTSLAKDGIVKISSFGTFLVKKKKERPGNIPNT 75

Query: 70  NQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           +++V I  R  V F+ S I+K + + + +G+
Sbjct: 76  SEKVMIQARNSVSFRPSKIIKNQSIINEQGK 106


>gi|291279805|ref|YP_003496640.1| integration host factor, subunit beta [Deferribacter
          desulfuricans SSM1]
 gi|290754507|dbj|BAI80884.1| integration host factor, beta subunit [Deferribacter
          desulfuricans SSM1]
          Length = 97

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 59/92 (64%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S L++ I++++  L++K     V  +FN I ++   GE ++I  F +F ++QK ++V
Sbjct: 1  MTKSQLIEIITEKYPKLTKKQIEFIVNGVFNTIKEALKNGEPVEIRGFGSFKIRQKEAKV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V+I  ++V  FK    +K+++++
Sbjct: 61 GRNPKTGETVQIPAKKVPYFKPGKEIKEQLIE 92


>gi|332977211|gb|EGK14007.1| DNA-binding protein HU [Desmospora sp. 8437]
          Length = 94

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 53/88 (60%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +++L+  ++++  +++KD+T+ V  + + I ++   GE +++  F  F V+++ +R
Sbjct: 2  RVVNKTELISQVAEKTNMTKKDATQAVDAVLDTITEALKAGEKVQLIGFGNFEVRERAAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN QT +E+ I   +V  FK    LK
Sbjct: 62 KGRNPQTGKEIDIPASKVPAFKPGKALK 89


>gi|304406950|ref|ZP_07388604.1| histone family protein DNA-binding protein [Paenibacillus
          curdlanolyticus YK9]
 gi|304343937|gb|EFM09777.1| histone family protein DNA-binding protein [Paenibacillus
          curdlanolyticus YK9]
          Length = 91

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 53/86 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  +++   LS+KD+T+ V  +F+ I D+   G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTELIAKVAELTELSKKDATKAVDAVFDAISDALQTGDKVQLVGFGNFEVRERQARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I   ++  FK    LK
Sbjct: 61 RNPQTGEEIEIAASKMPAFKPGKSLK 86


>gi|226312045|ref|YP_002771939.1| DNA-binding protein HU [Brevibacillus brevis NBRC 100599]
 gi|226094993|dbj|BAH43435.1| DNA-binding protein HU [Brevibacillus brevis NBRC 100599]
          Length = 90

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  +++   L++KD+T+ V  + + I D+   G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTELIAKVAETTELTKKDATKAVDAVLDAIADALKTGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FK    LK  I
Sbjct: 61 RNPQTGEEIEIASSKVPAFKPGKQLKDSI 89


>gi|227893493|ref|ZP_04011298.1| DNA-binding protein HU [Lactobacillus ultunensis DSM 16047]
 gi|227864718|gb|EEJ72139.1| DNA-binding protein HU [Lactobacillus ultunensis DSM 16047]
          Length = 91

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 49/87 (56%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV  ++ +  L++K+    V  +F  I D+  +GE +++  F TF V+ + +R GRN
Sbjct: 4  KAELVSEVASKTKLTKKEVAAAVDAIFGSIQDNLAKGEKVQLIGFGTFEVRHRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT  E++I    V  FK    LK+ +
Sbjct: 64 PQTGDEIQIPASEVPAFKPGKALKEAV 90


>gi|310815217|ref|YP_003963181.1| integration host factor subunit beta [Ketogulonicigenium vulgare
          Y25]
 gi|308753952|gb|ADO41881.1| integration host factor subunit beta [Ketogulonicigenium vulgare
          Y25]
          Length = 93

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ E   L  +D    V T+F+EI ++  +G  +++  F  F VK + SR 
Sbjct: 1  MIRSELIQKIADENPHLYHRDVENIVNTIFDEITEALAKGNRVELRGFGAFSVKHRDSRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V ++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGDPVDVEEKSVPFFKTGKLLRDRL 90


>gi|229008753|ref|ZP_04166148.1| DNA-binding protein HU [Bacillus mycoides Rock1-4]
 gi|228752514|gb|EEM02147.1| DNA-binding protein HU [Bacillus mycoides Rock1-4]
          Length = 90

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 55/89 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++ +  LS+KD+T  V  + ++I  +  + E++++  F TF V+++ +R G
Sbjct: 1  MNKTELINQVAVKSSLSKKDATASVQAILDQITKALQKEESVQLIGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  FKA   LK+ +
Sbjct: 61 RNPQTGEEMHIPGGKVPGFKAGKSLKEAV 89


>gi|169830293|ref|YP_001716275.1| histone family protein DNA-binding protein [Candidatus
          Desulforudis audaxviator MP104C]
 gi|169637137|gb|ACA58643.1| histone family protein DNA-binding protein [Candidatus
          Desulforudis audaxviator MP104C]
          Length = 91

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 56/89 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  L++KD+ + ++ +   I ++   G+ +++  F TF  +++ +R G
Sbjct: 1  MNKAELISSVAEKTNLTKKDAEKALSAMLESIREALSAGDKVQLVGFGTFETRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V VFKA   L++ +
Sbjct: 61 RNPQTGEEIDIAATKVPVFKAGKELRESV 89


>gi|58337267|ref|YP_193852.1| DNA-binding protein II HB [Lactobacillus acidophilus NCFM]
 gi|227903852|ref|ZP_04021657.1| DNA-binding protein HU [Lactobacillus acidophilus ATCC 4796]
 gi|315038200|ref|YP_004031768.1| DNA-binding protein II HB [Lactobacillus amylovorus GRL 1112]
 gi|325956652|ref|YP_004292064.1| DNA-binding protein II HB [Lactobacillus acidophilus 30SC]
 gi|58254584|gb|AAV42821.1| DNA-binding protein II HB [Lactobacillus acidophilus NCFM]
 gi|227868739|gb|EEJ76160.1| DNA-binding protein HU [Lactobacillus acidophilus ATCC 4796]
 gi|312276333|gb|ADQ58973.1| DNA-binding protein II HB [Lactobacillus amylovorus GRL 1112]
 gi|323466655|gb|ADX70342.1| Integration host factor, beta subunit [Lactobacillus helveticus
          H10]
 gi|325333217|gb|ADZ07125.1| DNA-binding protein II HB [Lactobacillus acidophilus 30SC]
 gi|327183477|gb|AEA31924.1| DNA-binding protein II HB [Lactobacillus amylovorus GRL 1118]
          Length = 91

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 49/87 (56%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV  ++ +  L++K+    V  +F  I D+  +GE +++  F TF V+ + +R GRN
Sbjct: 4  KAELVSEVASKTKLTKKEVAAAVDAIFGSIQDNLAKGEKVQLIGFGTFEVRHRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT  E++I    V  FK    LK+ +
Sbjct: 64 PQTGDEIEIPASEVPAFKPGKALKEAV 90


>gi|117924422|ref|YP_865039.1| HU family DNA-binding protein [Magnetococcus sp. MC-1]
 gi|117608178|gb|ABK43633.1| HU family DNA-binding protein [Magnetococcus sp. MC-1]
          Length = 91

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 49/88 (55%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          +++ K+++   GLS+ D+ + +   F  I D+   G  +++  F TF V ++ +R GRN 
Sbjct: 4  TEMKKTVADATGLSQADADKAIKASFAAIQDALAGGATVQLPGFGTFSVGERAARTGRNP 63

Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95
          QT  E++I   + V FKA   LK  + D
Sbjct: 64 QTGAEIQIAASKSVKFKAGKNLKDALND 91


>gi|161507461|ref|YP_001577415.1| DNA-binding protein II HB [Lactobacillus helveticus DPC 4571]
 gi|260101627|ref|ZP_05751864.1| DNA-binding protein HU [Lactobacillus helveticus DSM 20075]
 gi|160348450|gb|ABX27124.1| DNA-binding protein II HB [Lactobacillus helveticus DPC 4571]
 gi|260084560|gb|EEW68680.1| DNA-binding protein HU [Lactobacillus helveticus DSM 20075]
          Length = 91

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 49/87 (56%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV  ++ +  L++K+    V  +F  I D+  +GE +++  F TF V+ + +R GRN
Sbjct: 4  KAELVSEVASKTKLTKKEVAAAVDAIFGSIQDNLAKGEKVQLIGFGTFEVRHRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT  E++I    V  FK    LK+ +
Sbjct: 64 PQTGDEIEIPASEVPAFKPGKALKEAV 90


>gi|51245274|ref|YP_065158.1| integration host factor, alpha subunit [Desulfotalea psychrophila
           LSv54]
 gi|50876311|emb|CAG36151.1| related to integration host factor, alpha subunit [Desulfotalea
           psychrophila LSv54]
          Length = 103

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 52/89 (58%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +TR ++ + ++ + G S+   +  V +   ++ D+ + GE+IK+  F TF V+ K  R G
Sbjct: 13  LTRKEIAEELTGQLGYSQNICSEIVDSFLGKMKDALIEGESIKLVHFGTFTVRDKAPRTG 72

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T + + I  R+ V F+ S  L++++
Sbjct: 73  RNPRTGEPITITKRQAVSFRPSKKLREQV 101


>gi|124515663|gb|EAY57172.1| putative integration host factor, beta-subunit [Leptospirillum
          rubarum]
 gi|206602281|gb|EDZ38763.1| Putative integration host factor, beta-subunit [Leptospirillum
          sp. Group II '5-way CG']
          Length = 98

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TR DL+K I+ K  G+S  DS   V  LF  +    + GE+++I  F  F +  +  R+
Sbjct: 1  MTRDDLIKRIAEKNAGISLSDSRELVLDLFESMKSVILEGESLEIRRFGVFEIHHRKPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T ++V +  R+ ++F+   ILK R+
Sbjct: 61 ARNPRTGEKVSVGERKSLIFRPGKILKLRM 90


>gi|95930400|ref|ZP_01313136.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM
          684]
 gi|95133440|gb|EAT15103.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM
          684]
          Length = 90

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV +I+++  LS+ DS + +    + + ++   G+ I +  F TF V  + +RVG
Sbjct: 1  MTKTELVTAIAEKAELSKSDSEKALKAFVDTVTEALKGGDKIALVGFGTFSVGDRAARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +N QT  E+KI   +V  FKA   LK  +
Sbjct: 61 KNPQTGAEIKIPAAKVPKFKAGKALKDAV 89


>gi|290476984|ref|YP_003469895.1| DNA-binding protein HU-alpha [Xenorhabdus bovienii SS-2004]
 gi|289176328|emb|CBJ83133.1| DNA-binding protein HU-alpha (HU-2), plays a role in DNA
          replication and in rpo translation [Xenorhabdus
          bovienii SS-2004]
          Length = 90

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+++ GL++  +   + +  N I +S   G+++++  F TF V  +  R G
Sbjct: 1  MNKTELVDAIAEQAGLTKTQAKTALESTLNAITESLRNGDSVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E+KI    V  F A   LK  +
Sbjct: 61 RNPQTGNEIKIAAANVPAFSAGKALKDAV 89


>gi|195977763|ref|YP_002123007.1| DNA-binding protein HU [Streptococcus equi subsp. zooepidemicus
          MGCS10565]
 gi|225868935|ref|YP_002744883.1| DNA-binding protein HU [Streptococcus equi subsp. zooepidemicus]
 gi|225870057|ref|YP_002746004.1| DNA-binding protein HU [Streptococcus equi subsp. equi 4047]
 gi|195974468|gb|ACG61994.1| DNA-binding protein HU [Streptococcus equi subsp. zooepidemicus
          MGCS10565]
 gi|225699461|emb|CAW92972.1| DNA-binding protein HU [Streptococcus equi subsp. equi 4047]
 gi|225702211|emb|CAW99942.1| DNA-binding protein HU [Streptococcus equi subsp. zooepidemicus]
          Length = 91

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F+ I      GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVDAVFSAIEAFLAEGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E++I   +V  FKA   LK
Sbjct: 64 PQTGEEIEIAASKVPAFKAGKALK 87


>gi|270158045|ref|ZP_06186702.1| integration host factor alpha subunit [Legionella longbeachae
          D-4968]
 gi|289163687|ref|YP_003453825.1| integration host factor, alpha subunit [Legionella longbeachae
          NSW150]
 gi|269990070|gb|EEZ96324.1| integration host factor alpha subunit [Legionella longbeachae
          D-4968]
 gi|288856860|emb|CBJ10671.1| putative integration host factor, alpha subunit [Legionella
          longbeachae NSW150]
          Length = 97

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           ++++ + +++  E  LS+  S   V   F E+  +   G  +K+S F  F ++ K  R 
Sbjct: 3  ALSKAIMAETLCDELNLSKPASKEMVENFFEELRHALEHGHHVKLSGFGNFTLRDKPQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ +  RRVV FK    LK +I
Sbjct: 63 GRNPKTGEEIPVVARRVVTFKPGLKLKSKI 92


>gi|269218721|ref|ZP_06162575.1| DNA-binding protein HU [Actinomyces sp. oral taxon 848 str.
          F0332]
 gi|269211832|gb|EEZ78172.1| DNA-binding protein HU [Actinomyces sp. oral taxon 848 str.
          F0332]
          Length = 95

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 54/95 (56%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M  +I R++L+  I+++  LS+ D+ + V  L + + DS  +GEA+KI+        ++ 
Sbjct: 1  MGMSINRTELIAKIAEKANLSKTDADKAVAALQDVLVDSLSKGEAVKITGLLAVERTERA 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +R GRN +T +E++I     V   A S LKK + +
Sbjct: 61 ARKGRNPRTGEEIQIPAGYGVKLTAGSALKKAVTE 95


>gi|258405990|ref|YP_003198732.1| histone family protein DNA-binding protein [Desulfohalobium
          retbaense DSM 5692]
 gi|257798217|gb|ACV69154.1| histone family protein DNA-binding protein [Desulfohalobium
          retbaense DSM 5692]
          Length = 91

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LVK+++    L+++++   V T F+ I D+  +G+ ++I  F +F +K      G
Sbjct: 1  MNKSELVKALADAHNLTQEEAKDMVNTFFDSIKDALEQGDRVEIRGFGSFKIKHYEGYKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + V + P+R+  F+A   LK+ +
Sbjct: 61 RNPKTGEVVDVQPKRLPFFRAGKGLKEHL 89


>gi|117925417|ref|YP_866034.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
 gi|117609173|gb|ABK44628.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
          Length = 91

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S L++ I+++  LS++++   V+ +  EI  +  RGE +++  F  F V+ + SR  
Sbjct: 1  MTKSQLIQMIAEQHNLSKQNAELAVSLVLGEIVKAMERGERVELRGFGVFEVRHRQSRQA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   V +  +RV  FKA   +++R+
Sbjct: 61 RNPKTGDSVAVSEKRVPFFKAGKEMRERV 89


>gi|121535091|ref|ZP_01666908.1| histone family protein DNA-binding protein [Thermosinus
          carboxydivorans Nor1]
 gi|121306341|gb|EAX47266.1| histone family protein DNA-binding protein [Thermosinus
          carboxydivorans Nor1]
          Length = 91

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 54/86 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++ G+++KD+ + +  +F  I ++  + + ++I  F TF V+ + +R G
Sbjct: 1  MNKTELIASVAEKAGMTKKDAEKALNAVFASIEEALAQNDKVQIIGFGTFEVRTREARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+ I   +  VFKA   LK
Sbjct: 61 RNPQTGKEIDIPASKSPVFKAGKGLK 86


>gi|220931899|ref|YP_002508807.1| histone family protein DNA-binding protein [Halothermothrix orenii
           H 168]
 gi|219993209|gb|ACL69812.1| histone family protein DNA-binding protein [Halothermothrix orenii
           H 168]
          Length = 137

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 57/97 (58%), Gaps = 8/97 (8%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEIC----DSAVRGE----AIKISSFATFHV 56
           +T++DLV +++ + GL++KDS + V  +F+ I     D + + E    +++I  F TF V
Sbjct: 39  MTKTDLVDAVAAKTGLTKKDSNKAVKAVFDSIVEHLSDESKKAEGDRDSVQIIGFGTFEV 98

Query: 57  KQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           K + +R GRN QT +E+ I  R V VF+     K+ +
Sbjct: 99  KDRSARKGRNPQTGEEITIPARTVPVFRPGKSFKEAV 135


>gi|307942847|ref|ZP_07658192.1| integration host factor, beta subunit [Roseibium sp. TrichSKD4]
 gi|307773643|gb|EFO32859.1| integration host factor, beta subunit [Roseibium sp. TrichSKD4]
          Length = 99

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I+++   L ++D    V  + +EI ++ +RG+ +++  F  F VK + +R+
Sbjct: 1  MIKSELVQHIAEQNPHLYQRDVENIVNAILDEITEALMRGDRVELRGFGAFSVKNRPARI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T Q+V+++ + V  FK    ++ R+ D
Sbjct: 61 GRNPRTGQKVEVEEKHVPFFKTGKEMRLRLND 92


>gi|329114632|ref|ZP_08243391.1| Integration host factor subunit beta [Acetobacter pomorum DM001]
 gi|326696112|gb|EGE47794.1| Integration host factor subunit beta [Acetobacter pomorum DM001]
          Length = 109

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 1/104 (0%)

Query: 5   ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +TRS+L+ ++  K   L  K++TR V  +F  I  S   G  +++  F  F VK++  RV
Sbjct: 6   MTRSELITALMQKNPHLQLKEATRLVNIVFGTITSSLAEGSRVELRGFGAFSVKERDPRV 65

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           GRN +T  +V++  + V  FK    L +R+   + G K ++  V
Sbjct: 66  GRNPKTGVQVQVGKKLVPFFKTGKELHQRLNKPVSGSKRSRSSV 109


>gi|291523826|emb|CBK89413.1| Bacterial nucleoid DNA-binding protein [Eubacterium rectale DSM
          17629]
 gi|291528706|emb|CBK94292.1| Bacterial nucleoid DNA-binding protein [Eubacterium rectale
          M104/1]
          Length = 90

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV +++++ G+S+KD+   +    + + +   +GE I++  F TF V ++ +R G
Sbjct: 1  MNKADLVAAMAEKAGVSKKDAEASLKAFTDVVAEELKKGEKIQLVGFGTFEVSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT  E+ I   +   FKA   LK
Sbjct: 61 RNPQTGAEMTIAASKAPKFKAGKALK 86


>gi|15672484|ref|NP_266658.1| HU like DNA-binding protein [Lactococcus lactis subsp. lactis
          Il1403]
 gi|116511328|ref|YP_808544.1| nucleoid protein Hbs [Lactococcus lactis subsp. cremoris SK11]
 gi|125623363|ref|YP_001031846.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|281490996|ref|YP_003352976.1| DNA-binding protein HU [Lactococcus lactis subsp. lactis KF147]
 gi|14194595|sp|Q9CI64|DBH_LACLA RecName: Full=DNA-binding protein HU
 gi|12723384|gb|AAK04600.1|AE006285_8 HU like DNA-binding protein [Lactococcus lactis subsp. lactis
          Il1403]
 gi|12830838|gb|AAK08212.1|AF320913_2 HllA [Lactococcus lactis]
 gi|12830846|gb|AAK08218.1|AF320915_2 HllA [Lactococcus lactis subsp. cremoris MG1363]
 gi|12830851|gb|AAK08222.1|AF320916_3 HllA [Lactococcus lactis]
 gi|116106982|gb|ABJ72122.1| bacterial nucleoid protein Hbs [Lactococcus lactis subsp.
          cremoris SK11]
 gi|124492171|emb|CAL97100.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|281374754|gb|ADA64274.1| DNA-binding protein HU, histone-like protein [Lactococcus lactis
          subsp. lactis KF147]
 gi|300070111|gb|ADJ59511.1| DNA-binding protein HU, histone-like protein [Lactococcus lactis
          subsp. cremoris NZ9000]
 gi|326406030|gb|ADZ63101.1| DNA-binding protein HU-beta [Lactococcus lactis subsp. lactis
          CV56]
          Length = 91

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  ++ + GL++KDS + V      + +   +GE +++  F TF  +++ +R GRN
Sbjct: 4  KQDLIAEVAAKTGLTKKDSEKAVNAFGEVVTEFLAKGEKVQLIGFGTFETRERAAREGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT + +KI    V  FKA   LK
Sbjct: 64 PQTGEAIKIAATVVPAFKAGKALK 87


>gi|5420132|emb|CAB46606.1| HimA protein [Yersinia pseudotuberculosis]
          Length = 98

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 50/90 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS +     V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEHLFEKLGLSNEMLKILVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++ I  RRVV F+    LK R+
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>gi|317131350|ref|YP_004090664.1| histone family protein DNA-binding protein [Ethanoligenens
          harbinense YUAN-3]
 gi|315469329|gb|ADU25933.1| histone family protein DNA-binding protein [Ethanoligenens
          harbinense YUAN-3]
          Length = 91

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L+  ++++ GLS+KD+ +    L + I +S V  E +++  F TF V  + +R G
Sbjct: 1  MTKAELIAKVAEKSGLSKKDAEKATGALIDSIVESLVAEEKVQLVGFGTFEVHHREARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E+ I      VFKA    K
Sbjct: 61 RNPRTKEEITIPASAYPVFKAGKPFK 86


>gi|297205895|ref|ZP_06923290.1| DNA-binding protein HU [Lactobacillus jensenii JV-V16]
 gi|297149021|gb|EFH29319.1| DNA-binding protein HU [Lactobacillus jensenii JV-V16]
          Length = 91

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV  ++ +  L++KD    V  +F  I D   +GE +++  F TF V+ + +R GRN
Sbjct: 4  KAELVAEVAAKTKLTKKDVAAAVDAIFASIQDDLAKGEKVQLIGFGTFEVRNRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT  E++I   +V  FK    LK
Sbjct: 64 PQTGVEIEIPASKVPAFKPGKALK 87


>gi|153003612|ref|YP_001377937.1| histone family protein DNA-binding protein [Anaeromyxobacter sp.
          Fw109-5]
 gi|152027185|gb|ABS24953.1| histone family protein DNA-binding protein [Anaeromyxobacter sp.
          Fw109-5]
          Length = 126

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+  +  + G+++K +   + T+F+ + D+  RGE I+I     FHVK      G
Sbjct: 1  MLKSDLINILVVKRGVTQKQAESTIETIFDSMKDALCRGENIEIRGLGAFHVKHYDGYQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + + P+R ++F+    L+ R+
Sbjct: 61 RNPKTGEVIPVKPKRGILFRTGKELRDRV 89


>gi|78356842|ref|YP_388291.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
 gi|78219247|gb|ABB38596.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
          Length = 91

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 55/91 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K +S+E  +S +++T  VTT  + + D+   G+ ++I  F +F VKQ     G
Sbjct: 1  MNKSELIKVLSEENNISIEEATLVVTTFVDSMKDALAEGDRVEIRGFGSFKVKQYEGYSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + V + P+++  F+A   LK+ + D
Sbjct: 61 RNPKTGEIVNVQPKQLPFFRAGKELKEFLND 91


>gi|91774372|ref|YP_544128.1| nucleoid protein HU beta subunit [Methylobacillus flagellatus KT]
 gi|91708359|gb|ABE48287.1| bacterial nucleoid protein HU beta subunit [Methylobacillus
          flagellatus KT]
          Length = 90

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+KE G+S+  + + V      +  +   G+ + +  F TF V ++ +R G
Sbjct: 1  MNKTELIEEIAKEAGISKAAAGKAVDAFTASVTAALKSGDTVTLIGFGTFGVSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+KI  R+   FKA   LK
Sbjct: 61 RNPQTGKEIKIAARKAPSFKAGKALK 86


>gi|99034453|ref|ZP_01314451.1| hypothetical protein Wendoof_01000745 [Wolbachia endosymbiont of
          Drosophila willistoni TSC#14030-0811.24]
          Length = 101

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 48/80 (60%)

Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV 73
          I++E GLS++D    +  + +EI  S V+   +KISSF TF VK+K  R G    T+++V
Sbjct: 20 INQEIGLSKEDYVSIIDDILDEIKTSLVKDGIVKISSFGTFLVKKKKERPGNIPNTSEKV 79

Query: 74 KIDPRRVVVFKASSILKKRI 93
           I  R  V F+ S I+KK I
Sbjct: 80 MIQARNSVSFRPSKIIKKSI 99


>gi|295696966|ref|YP_003590204.1| histone family protein DNA-binding protein [Bacillus tusciae DSM
          2912]
 gi|295412568|gb|ADG07060.1| histone family protein DNA-binding protein [Bacillus tusciae DSM
          2912]
          Length = 92

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 55/89 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ DL+  ++++ GL++K ++  V  + + I ++   GE++ ++ F +F V+++ +R G
Sbjct: 1  MTKQDLIAKVAEKSGLTKKAASAAVDAVLDTIQEALQAGESVGLTGFGSFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I   +  VF+    LK+ +
Sbjct: 61 RNPQTGETIEIAGGKTPVFRPGKTLKEAV 89


>gi|118602642|ref|YP_903857.1| histone family protein DNA-binding protein [Candidatus Ruthia
          magnifica str. Cm (Calyptogena magnifica)]
 gi|118567581|gb|ABL02386.1| histone family protein DNA-binding protein [Candidatus Ruthia
          magnifica str. Cm (Calyptogena magnifica)]
          Length = 95

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 52/87 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +IT+ D+  ++ K   ++   +       F++I  +   GE++K+SSF  F +++K SR 
Sbjct: 2  SITKKDIASALVKSMDITHVQALAITHDFFDQIKQTLASGESVKLSSFGNFVIREKSSRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T + V+I  R+VVVFK+   LK
Sbjct: 62 GRNPKTGELVEILARKVVVFKSGLKLK 88


>gi|294023740|ref|YP_003547059.1| histone-like DNA-binding protein [Sphingobium japonicum UT26S]
 gi|292677520|dbj|BAI99036.1| histone-like DNA-binding protein [Sphingobium japonicum UT26S]
          Length = 91

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  SDL ++++   GLS+ D+ + V T+F+ I ++A +G+ I ++ F  F VK    R G
Sbjct: 1  MNNSDLAEAVAGAHGLSKADAKKVVDTVFSTIGEAAAKGDEISLNGFGKFKVKASSERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T + + I   + + F  + ++K ++
Sbjct: 61 RNPATGETITIKASKKLGFTPAKVIKDKL 89


>gi|260220853|emb|CBA28834.1| Integration host factor subunit beta [Curvibacter putative
          symbiont of Hydra magnipapillata]
          Length = 103

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDLV+ ++  F  L+ +D+   V  + + + D+ VRG  I+I  F +F + ++  R+
Sbjct: 1  MTRSDLVEELANRFSQLTHRDAEFAVKAILDAMNDALVRGHRIEIRGFGSFSINRRPPRM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V I  +RV  FK    L++ +
Sbjct: 61 GRNPRSGESVAIPEKRVPHFKPGKALREAV 90


>gi|254499149|ref|ZP_05111836.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254351628|gb|EET10476.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 92

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV +I+   GL++ D++R + T  + I D+   G+ + I  F +F    + +R G
Sbjct: 1  MNKSELVDAIASGSGLTKADASRVLETFTSTITDALKSGDQVVIPGFGSFSTGNRSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + ++I   RV  FKA   LK+ + +
Sbjct: 61 RNPQTGKVIEIKASRVAKFKAGKNLKEAVQE 91


>gi|115380144|ref|ZP_01467177.1| integration host factor, beta subunit [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823549|ref|YP_003955907.1| integration host factor subunit beta [Stigmatella aurantiaca
           DW4/3-1]
 gi|115362849|gb|EAU62051.1| integration host factor, beta subunit [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396621|gb|ADO74080.1| Integration host factor, beta subunit [Stigmatella aurantiaca
           DW4/3-1]
          Length = 113

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 58/107 (54%), Gaps = 2/107 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +SDL+  +  + G+++K +   V T+F  + ++  RGE I+I     FHVK      G
Sbjct: 1   MLKSDLINILVTKRGVTQKQAEATVETIFESMKEALCRGENIEIRGLGAFHVKNYQGYQG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111
           RN +T Q + + P+R ++F+    L+ R+  +    +  + D++ PS
Sbjct: 61  RNPKTGQVIPVKPKRGLLFRTGKELRDRV--NRPAAQSAQPDLSDPS 105


>gi|104773912|ref|YP_618892.1| histone-like DNA-binding protein [Lactobacillus delbrueckii
          subsp. bulgaricus ATCC 11842]
 gi|300812170|ref|ZP_07092614.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp.
          bulgaricus PB2003/044-T3-4]
 gi|313123538|ref|YP_004033797.1| histone-like DNA-binding protein [Lactobacillus delbrueckii
          subsp. bulgaricus ND02]
 gi|21633223|gb|AAM22485.1| HlbA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103422993|emb|CAI97675.1| Histone-like DNA-binding protein [Lactobacillus delbrueckii
          subsp. bulgaricus ATCC 11842]
 gi|300496855|gb|EFK31933.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp.
          bulgaricus PB2003/044-T3-4]
 gi|312280101|gb|ADQ60820.1| Histone-like DNA-binding protein [Lactobacillus delbrueckii
          subsp. bulgaricus ND02]
 gi|325684299|gb|EGD26472.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp. lactis
          DSM 20072]
          Length = 91

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV  ++ +  L++KD +  V  +F  I +   +GE +++  F TF V+ + +R GRN
Sbjct: 4  KAELVSEVAAKTKLTKKDVSEAVDAVFEAIQEDLAKGEKVQLIGFGTFEVRDRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT  E++I   +V  FK    LK
Sbjct: 64 PQTGAEIEIPASKVPAFKPGKALK 87


>gi|282855424|ref|ZP_06264745.1| DNA-binding protein HU [Pyramidobacter piscolens W5455]
 gi|282586720|gb|EFB91967.1| DNA-binding protein HU [Pyramidobacter piscolens W5455]
          Length = 91

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DL+  ++   G+S+K +   ++  F  I  +  +G+ +++  F TF V+++ +RVG
Sbjct: 1  MTKNDLINEVAANAGMSKKAAGEAISATFAAIEKALAKGDRVQLVGFGTFEVRKRAARVG 60

Query: 65 RNLQ-TNQEVKIDPRRVVVFKASSILKKRI 93
          RN Q   + ++I  ++V VF+A   LK+++
Sbjct: 61 RNPQDPKKTIQIPAKKVPVFRAGKGLKEQV 90


>gi|256823167|ref|YP_003147130.1| histone family protein DNA-binding protein [Kangiella koreensis
          DSM 16069]
 gi|256796706|gb|ACV27362.1| histone family protein DNA-binding protein [Kangiella koreensis
          DSM 16069]
          Length = 90

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    +S+  + R + ++   I DS  +GE + +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAAGADISKAAAGRALDSMLGAITDSLQKGEQVSLVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + ++I   +V  FKA   LK  +
Sbjct: 61 RNPKTGETIQIKAAKVPGFKAGKALKDAV 89


>gi|254514390|ref|ZP_05126451.1| DNA-binding protein HU [gamma proteobacterium NOR5-3]
 gi|219676633|gb|EED32998.1| DNA-binding protein HU [gamma proteobacterium NOR5-3]
          Length = 91

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+ +I+    +++ D+ R +  + + I ++  RG+ + +  F TF VK + +R G
Sbjct: 1  MNKSDLIDAIASAADINKSDAGRALDAVVDSITETLKRGDQVSLVGFGTFSVKHRAARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + +KI    V  FKA   LK  +
Sbjct: 61 RNPQTGETIKIKASNVPGFKAGKALKDAV 89


>gi|328467367|gb|EGF38445.1| DNA-binding protein II HB [Lactobacillus helveticus MTCC 5463]
          Length = 91

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 49/87 (56%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV  ++ +  L++K+    +  +F  I D+  +GE +++  F TF V+ + +R GRN
Sbjct: 4  KAELVSEVASKTKLTKKEVAAAIDAIFGSIQDNLAKGEKVQLIGFGTFEVRHRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT  E++I    V  FK    LK+ +
Sbjct: 64 PQTGDEIEIPASEVPAFKPGKALKEAV 90


>gi|154250603|ref|YP_001411427.1| integration host factor subunit beta [Parvibaculum
          lavamentivorans DS-1]
 gi|171769416|sp|A7HPD7|IHFB_PARL1 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|154154553|gb|ABS61770.1| integration host factor, beta subunit [Parvibaculum
          lavamentivorans DS-1]
          Length = 110

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV  +++    L ++D  R V+T+F+EI  +  RG+ +++  F  F VK + +R 
Sbjct: 1  MIKSELVARLAQANPHLYQRDVERIVSTIFDEISAALARGDRVELRGFGAFSVKSRPART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +D + V  FK    L++R+
Sbjct: 61 GRNPRTGEPVHVDEKSVPFFKTGKELRERL 90


>gi|294501077|ref|YP_003564777.1| non-specific DNA-binding protein HBsu [Bacillus megaterium QM
          B1551]
 gi|295706425|ref|YP_003599500.1| non-specific DNA-binding protein HBsu [Bacillus megaterium DSM
          319]
 gi|294351014|gb|ADE71343.1| non-specific DNA-binding protein HBsu [Bacillus megaterium QM
          B1551]
 gi|294804084|gb|ADF41150.1| non-specific DNA-binding protein HBsu [Bacillus megaterium DSM
          319]
          Length = 90

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 53/86 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   LS+KD+T+ V  +F+ I ++    + +++  F  F V+++ +R G
Sbjct: 1  MNKTELINAVAEASELSKKDATKAVDAVFDTILEALKAEDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I   +V  FK    LK
Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALK 86


>gi|158523217|ref|YP_001531087.1| histone family protein DNA-binding protein [Desulfococcus
          oleovorans Hxd3]
 gi|158512043|gb|ABW69010.1| histone family protein DNA-binding protein [Desulfococcus
          oleovorans Hxd3]
          Length = 91

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV ++  + G+S+ ++ + V T F+ + D+   GE +++    +F VK+  S  G
Sbjct: 1  MNKLELVTALKDKTGVSKVEAAKIVKTFFDTMADTLATGERVEVRGLCSFFVKEYKSYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T ++V I P+++  FK    LK+RI
Sbjct: 61 RNPKTGEKVTIAPKKLPFFKCGKELKERI 89


>gi|270156948|ref|ZP_06185605.1| DNA-binding protein HU-beta [Legionella longbeachae D-4968]
 gi|289164628|ref|YP_003454766.1| DNA-binding protein HU-beta [Legionella longbeachae NSW150]
 gi|269988973|gb|EEZ95227.1| DNA-binding protein HU-beta [Legionella longbeachae D-4968]
 gi|288857801|emb|CBJ11645.1| putative DNA-binding protein HU-beta [Legionella longbeachae
          NSW150]
          Length = 92

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV +I+   GL++ D++R + T  + I D+   G+ + I  F +F    + +R G
Sbjct: 1  MNKSELVDAIASGSGLTKADASRVLETFTSTITDALRSGDQVVIPGFGSFSTGNRSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + ++I   RV  FKA   LK+ + +
Sbjct: 61 RNPQTGKVIQIKASRVAKFKAGKNLKEAVQE 91


>gi|154253667|ref|YP_001414491.1| histone family DNA-binding protein [Parvibaculum lavamentivorans
          DS-1]
 gi|154157617|gb|ABS64834.1| histone family protein DNA-binding protein [Parvibaculum
          lavamentivorans DS-1]
          Length = 91

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  ++   GLS+ D+T+ V  +F+ I DS  +GE +++  F TF+V  + +  G
Sbjct: 1  MNKNDLIAEVADRSGLSKADATKAVDYVFDIITDSLKKGEEVRLVGFGTFNVSNRAATEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + ++I   +   FKA   LK  +
Sbjct: 61 RNPRTGETIQIPASKQPKFKAGKGLKDAV 89


>gi|46580273|ref|YP_011081.1| DNA-binding protein HU subunit beta [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|120602345|ref|YP_966745.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris DP4]
 gi|46449690|gb|AAS96340.1| DNA-binding protein HU, beta subunit, putative [Desulfovibrio
          vulgaris str. Hildenborough]
 gi|120562574|gb|ABM28318.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris DP4]
 gi|311233745|gb|ADP86599.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris RCH1]
          Length = 93

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 54/87 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++++S+E  +  +++T  V T  + + DS + G+ ++I  F +F +K  G   G
Sbjct: 1  MNKSELIRTLSEETNIPIEEATIVVNTFIDNMKDSLLAGDRVEIRGFGSFKIKDYGGYSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T + V ++P+R+  F+A   LK+
Sbjct: 61 RNPKTGKMVDVEPKRLPFFRAGKELKE 87


>gi|149177307|ref|ZP_01855912.1| probable DNA-binding protein HU [Planctomyces maris DSM 8797]
 gi|148843832|gb|EDL58190.1| probable DNA-binding protein HU [Planctomyces maris DSM 8797]
          Length = 148

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ ++VK IS+E GL++  +   V   F+ I D+ V  + I++ +F  F VK++ +R  
Sbjct: 1  MTKKEIVKVISEEIGLTQLKTKEIVQKTFDAIVDTLVTDKRIELRNFGVFEVKKRAARKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   V ++ + VV FK    ++KR+
Sbjct: 61 RNPRTGDRVDVEEKYVVTFKPGKEMEKRV 89


>gi|39997696|ref|NP_953647.1| DNA-binding protein HU [Geobacter sulfurreducens PCA]
 gi|39984588|gb|AAR35974.1| DNA-binding protein HU [Geobacter sulfurreducens PCA]
 gi|298506629|gb|ADI85352.1| integration host factor, beta subunit [Geobacter sulfurreducens
          KN400]
          Length = 96

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV+ ++ K   L+RKDS   V  +F+ I D+   GE ++I  F +F V+++G+R 
Sbjct: 1  MTKSELVEMLAEKNSWLTRKDSEMVVNIVFDSIADALKSGEKVEIRGFGSFTVRERGARE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN ++   VKI  ++   FK    L++R+
Sbjct: 61 ARNPKSGAIVKIPAKKTPFFKTGKELRERV 90


>gi|189499304|ref|YP_001958774.1| histone family protein DNA-binding protein [Chlorobium
          phaeobacteroides BS1]
 gi|189494745|gb|ACE03293.1| histone family protein DNA-binding protein [Chlorobium
          phaeobacteroides BS1]
          Length = 90

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++++LV+ I+ + GL++ D+ R V+   N +      G+ I +  F TF   ++ +R G
Sbjct: 1  MSKAELVEKIASQAGLTKADAERAVSAFVNVVTAGLKAGDDITLVGFGTFSTGERAARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I  ++VV FKA   L+  +
Sbjct: 61 RNPQTGETISIAAKKVVKFKAGKALRDEV 89


>gi|313894803|ref|ZP_07828363.1| DNA-binding protein HU-beta [Selenomonas sp. oral taxon 137 str.
          F0430]
 gi|320530142|ref|ZP_08031212.1| putative integration host factor, beta subunit [Selenomonas
          artemidis F0399]
 gi|312976484|gb|EFR41939.1| DNA-binding protein HU-beta [Selenomonas sp. oral taxon 137 str.
          F0430]
 gi|320137575|gb|EFW29487.1| putative integration host factor, beta subunit [Selenomonas
          artemidis F0399]
          Length = 90

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 51/86 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +++++  L++KD+ + V  +F  I  +   G+ +++  F TF VK + +R G
Sbjct: 1  MNKQELVANVAEQANLTKKDAEKAVNAIFETIKGALSEGDRVQLIGFGTFEVKARQARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E+ I   +  VFKA   LK
Sbjct: 61 RNPRTGKEINIPASKTPVFKAGKALK 86


>gi|15613872|ref|NP_242175.1| non-specific DNA-binding protein II (HB) (HU) [Bacillus
          halodurans C-125]
 gi|14194649|sp|Q9KDA5|DBH1_BACHD RecName: Full=DNA-binding protein HU-1
 gi|10173925|dbj|BAB05028.1| non-specific DNA-binding protein II (HB) (HU) [Bacillus
          halodurans C-125]
          Length = 90

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++  LS+KD+++ V  +F  I  +   G  +++  F +F V+++ +R G
Sbjct: 1  MNKTDLINAVAEQAELSKKDASKAVDAVFESITGALKEGGKVQLVGFGSFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +   FK    LK  +
Sbjct: 61 RNPQTGEEIEIPATKNPAFKPGKQLKDAV 89


>gi|118593738|ref|ZP_01551107.1| integration host factor subunit beta [Stappia aggregata IAM
          12614]
 gi|118433648|gb|EAV40311.1| integration host factor subunit beta [Stappia aggregata IAM
          12614]
          Length = 99

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I+++   L ++D    V  + +E+ ++ +RG+ +++  F  F VK + +RV
Sbjct: 1  MIKSELVQHIAEQNPHLYQRDVENIVNAILDEVTEALMRGDRVELRGFGAFSVKNRPARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T Q+V++D + V  FK    ++ R+ D
Sbjct: 61 GRNPRTGQKVEVDEKFVPFFKTGKEMRIRLND 92


>gi|78188818|ref|YP_379156.1| histone-like DNA-binding protein [Chlorobium chlorochromatii
          CaD3]
 gi|78171017|gb|ABB28113.1| Histone-like DNA-binding protein [Chlorobium chlorochromatii
          CaD3]
          Length = 102

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 56/98 (57%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M  T T+ DLV +I++  GL++ ++   V  LF  I +S   G  I+I  F +F+++QK 
Sbjct: 1  MGNTTTKIDLVTTIARNTGLTKYETEAVVNCLFESIIESLKAGRRIEIRGFGSFNIRQKN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           R  RN +T ++V ++ ++V  FK S   K  + + ++
Sbjct: 61 VRKARNPRTGEKVMVESKQVPSFKISREFKLAVSESLK 98


>gi|303242803|ref|ZP_07329270.1| histone family protein DNA-binding protein [Acetivibrio
          cellulolyticus CD2]
 gi|302589653|gb|EFL59434.1| histone family protein DNA-binding protein [Acetivibrio
          cellulolyticus CD2]
          Length = 92

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 52/86 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV SI+ + GL++K+S   +  L + + ++  +G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTELVNSIASKSGLNKKNSEAALNALISSVEETLEKGDKVVLVGFGTFEVRNRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+ I   +  VFKA   LK
Sbjct: 61 RNPQTKKEITIPASKAPVFKAGKGLK 86


>gi|220903465|ref|YP_002478777.1| histone family protein DNA-binding protein [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219867764|gb|ACL48099.1| histone family protein DNA-binding protein [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 95

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 2/87 (2%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQK 59
          M KT+T++D+V++I +E   +R D    V  L  EI  +A++ + A+ IS F  F    K
Sbjct: 1  MKKTLTKADIVEAIYEETDKNRVDVKNVVEKLL-EIMKTAIKKDRALLISGFGKFECYDK 59

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKAS 86
           SR GRN +T++ + + PR+V+VF+ S
Sbjct: 60 ASRKGRNPKTDETITLPPRKVMVFRLS 86


>gi|52842083|ref|YP_095882.1| hypothetical protein lpg1858 [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
 gi|52629194|gb|AAU27935.1| HupB DNA binding protein HU-beta [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
          Length = 100

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV +I+   GL++ D++R + T    + D   +G+ + I  F +F    + +R G
Sbjct: 9  MNKSELVDAIASGSGLTKADASRVLETFMATVTDVLKKGDQVVIPGFGSFSTGNRSARTG 68

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I   RV  FKA   LK+ +
Sbjct: 69 RNPQTGKTIQIKASRVAKFKAGKNLKEAV 97


>gi|298528155|ref|ZP_07015559.1| histone family protein DNA-binding protein [Desulfonatronospira
          thiodismutans ASO3-1]
 gi|298511807|gb|EFI35709.1| histone family protein DNA-binding protein [Desulfonatronospira
          thiodismutans ASO3-1]
          Length = 91

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K +++E  LS +++T  VT  F+ + ++   G+ ++I  F +F +K+     G
Sbjct: 1  MNKSELIKRLAEERDLSLEEATEIVTIFFDSMKEALQNGDRVEIRGFGSFKIKEYDGYQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + V + P+R+  F+A   LK+ +
Sbjct: 61 RNPKTGKPVNVSPKRLPFFRAGKELKEYL 89


>gi|254449408|ref|ZP_05062845.1| integration host factor, beta subunit [Octadecabacter antarcticus
           238]
 gi|198263814|gb|EDY88084.1| integration host factor, beta subunit [Octadecabacter antarcticus
           238]
          Length = 117

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 56/93 (60%), Gaps = 1/93 (1%)

Query: 2   SKTITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
            + + RS+L  +I+++   L ++D  R V T+F  I ++   G+ +++  F  F VK++ 
Sbjct: 22  ERQMIRSELTDTIAEQNPHLYQRDVERIVNTIFGRIIEAMSNGDRVELRGFGAFSVKKRD 81

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           +R+GRN +T + V+++ + V  FK   +L+ R+
Sbjct: 82  ARLGRNPRTGEAVQVEEKHVPFFKTGKLLRDRL 114


>gi|226953082|ref|ZP_03823546.1| DNA-binding protein HU-beta [Acinetobacter sp. ATCC 27244]
 gi|294650671|ref|ZP_06728025.1| DNA-binding protein HU-beta family protein [Acinetobacter
          haemolyticus ATCC 19194]
 gi|226836174|gb|EEH68557.1| DNA-binding protein HU-beta [Acinetobacter sp. ATCC 27244]
 gi|292823462|gb|EFF82311.1| DNA-binding protein HU-beta family protein [Acinetobacter
          haemolyticus ATCC 19194]
          Length = 90

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+++ G+S+ D+ + +      I ++  +G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAEKGGVSKSDAGKALDATIASITEALKKGDTVTLVGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E++I   +V  FKA   LK  +
Sbjct: 61 RNPKTGEELQIKASKVPSFKAGKGLKDSV 89


>gi|295704900|ref|YP_003597975.1| DNA-binding protein HU [Bacillus megaterium DSM 319]
 gi|294802559|gb|ADF39625.1| DNA-binding protein HU [Bacillus megaterium DSM 319]
          Length = 90

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 52/87 (59%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++L+ +++ +  L+++D+ + V  LF  I ++    E I++  F TF V+++ +R GRN
Sbjct: 3  KAELIDAVATKSELTKQDTKKAVDALFETISNTLANEEKIQLIGFGTFEVRERAARTGRN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT +E+ I   +V  FK    LK+ +
Sbjct: 63 PQTGEEMTIPASKVPAFKPGKELKEAL 89


>gi|291614503|ref|YP_003524660.1| histone family protein DNA-binding protein [Sideroxydans
          lithotrophicus ES-1]
 gi|291584615|gb|ADE12273.1| histone family protein DNA-binding protein [Sideroxydans
          lithotrophicus ES-1]
          Length = 94

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +L+ +++++ G S+ D+ R +  L + +  +  +G+ + +  F TF V+++ +R G
Sbjct: 1  MNRKELIDALAEKTGSSKADADRNIAALIDIVTATLKKGDNVALVGFGTFEVRKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T  E+KI   +V  FKA + LK  +
Sbjct: 61 RNPATGAELKIKASKVPAFKAGATLKATV 89


>gi|288904847|ref|YP_003430069.1| DNA-binding protein HU [Streptococcus gallolyticus UCN34]
 gi|306830879|ref|ZP_07464041.1| DNA-binding protein HU [Streptococcus gallolyticus subsp.
          gallolyticus TX20005]
 gi|325977779|ref|YP_004287495.1| DNA-binding protein HU [Streptococcus gallolyticus subsp.
          gallolyticus ATCC BAA-2069]
 gi|288731573|emb|CBI13128.1| DNA-binding protein HU [Streptococcus gallolyticus UCN34]
 gi|304426902|gb|EFM30012.1| DNA-binding protein HU [Streptococcus gallolyticus subsp.
          gallolyticus TX20005]
 gi|325177707|emb|CBZ47751.1| DNA-binding protein HU [Streptococcus gallolyticus subsp.
          gallolyticus ATCC BAA-2069]
          Length = 91

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F+ I      GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVDAVFSAIESFLSEGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E++I   +V  FKA   LK
Sbjct: 64 PQTGEEIEIAASKVPAFKAGKALK 87


>gi|238917311|ref|YP_002930828.1| DNA-binding protein HU-beta [Eubacterium eligens ATCC 27750]
 gi|238872671|gb|ACR72381.1| DNA-binding protein HU-beta [Eubacterium eligens ATCC 27750]
          Length = 99

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV +I+++  LS+KD+ + V    + + +    GE I++  F TF V ++ +R G
Sbjct: 1  MNKSELVAAIAEKAELSKKDAEKAVKAFTDTVAEQLKAGEKIQLVGFGTFEVAERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          +N QT + ++I   +   FKA   LK
Sbjct: 61 KNPQTGKAIQIPASKAPKFKAGKALK 86


>gi|206973313|ref|ZP_03234235.1| DNA-binding protein HU 1 [Bacillus cereus AH1134]
 gi|206732197|gb|EDZ49397.1| DNA-binding protein HU 1 [Bacillus cereus AH1134]
          Length = 93

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          I +++L K ++++  L +KD      T+ + I ++   GE ++I SF TF V+++ +R G
Sbjct: 4  INKTELTKVVAEKTELIQKDPVAATQTVLDTITNALANGEKVQILSFCTFEVRERSARTG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT ++++I   +   FKA   LK+ +
Sbjct: 64 RNPQTGKKMQIAASKAPAFKAGKELKEAV 92


>gi|91763239|ref|ZP_01265203.1| Bacterial DNA-binding protein [Candidatus Pelagibacter ubique
          HTCC1002]
 gi|91717652|gb|EAS84303.1| Bacterial DNA-binding protein [Candidatus Pelagibacter ubique
          HTCC1002]
          Length = 100

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 47/82 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ DL+ SI  + G S+  S   +      I D+    + +K+S F TF ++ K SR+G
Sbjct: 6  LTKKDLINSIYMQIGFSKNISENLIDDFLITIVDNLKIEKKLKLSKFGTFSIRAKKSRIG 65

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN +T ++  I  R VV+FKAS
Sbjct: 66 RNPKTKEQTTISNRDVVLFKAS 87


>gi|78485524|ref|YP_391449.1| histone-like DNA-binding protein [Thiomicrospira crunogena XCL-2]
 gi|78363810|gb|ABB41775.1| histone-like DNA-binding protein [Thiomicrospira crunogena XCL-2]
          Length = 90

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++E GL++ D+ + +    + +  +   G+++ I  F TF V ++ +R G
Sbjct: 1  MNKTELVSAIAEEAGLTKADAAKALEATVSTVTKALSSGDSVAIIGFGTFKVGERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I   +V  F A   LK+ +
Sbjct: 61 RNPQTGAEMQIPAAKVPKFSAGKALKEAV 89


>gi|71083725|ref|YP_266445.1| DNA-binding protein [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062838|gb|AAZ21841.1| Bacterial DNA-binding protein [Candidatus Pelagibacter ubique
          HTCC1062]
          Length = 102

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 47/82 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ DL+ SI  + G S+  S   +      I D+    + +K+S F TF ++ K SR+G
Sbjct: 8  LTKKDLINSIYMQIGFSKNISENLIDDFLITIVDNLKIEKKLKLSKFGTFSIRAKKSRIG 67

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN +T ++  I  R VV+FKAS
Sbjct: 68 RNPKTKEQTTISNRDVVLFKAS 89


>gi|238922939|ref|YP_002936452.1| DNA-binding protein HU [Eubacterium rectale ATCC 33656]
 gi|238874611|gb|ACR74318.1| DNA-binding protein HU [Eubacterium rectale ATCC 33656]
          Length = 99

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV +++++ G+S+KD+   +    + + +   +GE I++  F TF V ++ +R G
Sbjct: 10 MNKADLVAAMAEKAGVSKKDAEASLKAFTDVVAEELKKGEKIQLVGFGTFEVSERAARTG 69

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT  E+ I   +   FKA   LK
Sbjct: 70 RNPQTGAEMTIAASKAPKFKAGKALK 95


>gi|291542886|emb|CBL15996.1| bacterial nucleoid protein Hbs [Ruminococcus bromii L2-63]
          Length = 91

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 54/86 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++ GLS+KD+ + V++  + I ++   GE I+I+ F TF  +Q+ +R G
Sbjct: 1  MNKTELIAAVAEQSGLSKKDAEKAVSSTIDTIINTVAEGEKIQIAGFGTFEQRQRNARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           + +T + ++I   +V  FKA    K
Sbjct: 61 CDPRTGKSIEIPASKVPAFKAGKGFK 86


>gi|256005929|ref|ZP_05430873.1| histone family protein DNA-binding protein [Clostridium
          thermocellum DSM 2360]
 gi|281416578|ref|ZP_06247598.1| histone family protein DNA-binding protein [Clostridium
          thermocellum JW20]
 gi|255990100|gb|EEU00238.1| histone family protein DNA-binding protein [Clostridium
          thermocellum DSM 2360]
 gi|281407980|gb|EFB38238.1| histone family protein DNA-binding protein [Clostridium
          thermocellum JW20]
 gi|316939684|gb|ADU73718.1| histone family protein DNA-binding protein [Clostridium
          thermocellum DSM 1313]
          Length = 91

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ SI+ + GLS+K+S   +      + ++  +G+ + +  F TF VK + +R G
Sbjct: 1  MNKTELINSIASKSGLSKKNSEAALNAFIASVEEALKKGDKVVLVGFGTFEVKNRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+ I   +  VFKA   LK
Sbjct: 61 RNPQTKEEITIPASKAPVFKAGKGLK 86


>gi|54294745|ref|YP_127160.1| hypothetical protein lpl1822 [Legionella pneumophila str. Lens]
 gi|54297775|ref|YP_124144.1| hypothetical protein lpp1826 [Legionella pneumophila str. Paris]
 gi|148359403|ref|YP_001250610.1| hypothetical protein LPC_1303 [Legionella pneumophila str. Corby]
 gi|296107449|ref|YP_003619149.1| hypothetical protein lpa_02684 [Legionella pneumophila 2300/99
          Alcoy]
 gi|53751560|emb|CAH12978.1| hypothetical protein lpp1826 [Legionella pneumophila str. Paris]
 gi|53754577|emb|CAH16061.1| hypothetical protein lpl1822 [Legionella pneumophila str. Lens]
 gi|148281176|gb|ABQ55264.1| hypothetical protein LPC_1303 [Legionella pneumophila str. Corby]
 gi|295649350|gb|ADG25197.1| hypothetical protein lpa_02684 [Legionella pneumophila 2300/99
          Alcoy]
 gi|307610561|emb|CBX00149.1| hypothetical protein LPW_18941 [Legionella pneumophila 130b]
          Length = 92

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV +I+   GL++ D++R + T    + D   +G+ + I  F +F    + +R G
Sbjct: 1  MNKSELVDAIASGSGLTKADASRVLETFMATVTDVLKKGDQVVIPGFGSFSTGNRSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I   RV  FKA   LK+ +
Sbjct: 61 RNPQTGKTIQIKASRVAKFKAGKNLKEAV 89


>gi|159043576|ref|YP_001532370.1| integration host factor subunit beta [Dinoroseobacter shibae DFL
          12]
 gi|189045035|sp|A8LSF5|IHFB_DINSH RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|157911336|gb|ABV92769.1| integration host factor, beta subunit [Dinoroseobacter shibae DFL
          12]
          Length = 95

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ ++ E   L ++D  R V T+F EI ++   G+ +++  F  F VK + +R 
Sbjct: 1  MIRSELIQIVADENPHLYQRDVERIVNTVFEEIIEAMSNGDRVELRGFGAFSVKHRDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGEAVAVEAKSVPFFKTGKLLRDRL 90


>gi|269468161|gb|EEZ79863.1| DNA-binding protein HU [uncultured SUP05 cluster bacterium]
          Length = 91

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+++I+   GLS+ D+ + +    + I  +  +G+ ++I+ F +F  + + +R G
Sbjct: 1  MNKTELIEAIASAAGLSKADAGKALNATTDAITGAMAKGDGVQITGFGSFITRARAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I    V  FKA   LK+ +
Sbjct: 61 RNPQTGATIQIKASTVAAFKAGKALKEAV 89


>gi|218134050|ref|ZP_03462854.1| hypothetical protein BACPEC_01940 [Bacteroides pectinophilus ATCC
          43243]
 gi|217991425|gb|EEC57431.1| hypothetical protein BACPEC_01940 [Bacteroides pectinophilus ATCC
          43243]
          Length = 96

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++  LS+KD+   +  L   I +   +GE +++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAMAEKAELSKKDAEAALKALTATIAEELTKGEKVQLVGFGTFEVSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          +N QT + +KI   +   FKA   LK
Sbjct: 61 KNPQTGKAIKIPASKAPKFKAGKALK 86


>gi|108805105|ref|YP_645042.1| nucleoid protein Hbs [Rubrobacter xylanophilus DSM 9941]
 gi|108766348|gb|ABG05230.1| bacterial nucleoid protein Hbs [Rubrobacter xylanophilus DSM
          9941]
          Length = 90

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+++   S+ ++ RF       + DS  +GE ++I+ F  F+V+++ +R G
Sbjct: 1  MNKSELIQEIAEKTNGSKSEAQRFFDAFAEVVRDSLKKGEPVQITGFGKFYVQEREAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N QT Q++ I P +V  F A + LK+ I
Sbjct: 61 INPQTKQKITIPPSKVPKFTAGNSLKEAI 89


>gi|227892085|ref|ZP_04009890.1| DNA-binding protein HU [Lactobacillus salivarius ATCC 11741]
 gi|227866124|gb|EEJ73545.1| DNA-binding protein HU [Lactobacillus salivarius ATCC 11741]
          Length = 91

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV  I+++ G+S+K++        + +  +   G  I++  F TF V+++ +R G
Sbjct: 1  MNKSELVSVIAEKMGVSKKEAEIATNAFISTVSTALTEGRKIQLVGFGTFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ +  R V VFKA   LK+ +
Sbjct: 61 RNPQTGKEMLLPGRNVPVFKAGKSLKEAV 89


>gi|317476991|ref|ZP_07936233.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316906784|gb|EFV28496.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 90

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 45/82 (54%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          +    +S+  G + KD++  VT+L +++      G  I I  F TF VK+K  R+  N  
Sbjct: 5  EFTSELSRRLGYTLKDTSELVTSLLSDMTRQLEEGNVISIQGFGTFEVKKKAERISVNPT 64

Query: 69 TNQEVKIDPRRVVVFKASSILK 90
          T Q + + P+ V+ +K S++LK
Sbjct: 65 TKQRMLVPPKLVLTYKPSTLLK 86


>gi|163751872|ref|ZP_02159086.1| DNA-binding protein, HU family [Shewanella benthica KT99]
 gi|161328222|gb|EDP99386.1| DNA-binding protein, HU family [Shewanella benthica KT99]
          Length = 90

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + +    + DS   G+ I +  F TF V+Q+  R G
Sbjct: 1  MNKSELIEKIATGADISKAAAGRALDSFIGAVTDSLKNGDKISLVGFGTFEVRQRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E+KI    +  FKA   LK  +
Sbjct: 61 RNPQTGAEIKIAAANIPAFKAGKALKDAV 89


>gi|291529702|emb|CBK95288.1| Bacterial nucleoid DNA-binding protein [Eubacterium rectale
          M104/1]
          Length = 90

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 52/86 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV +++++ GL+ KD    V      + ++ V+G+ +++  F TF V ++ +R+G
Sbjct: 1  MTKAELVSAMAEKTGLTNKDVAAAVNAFTESVKEALVKGDKVQLVGFGTFEVAERAARMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN  T + ++I   +   +K SS LK
Sbjct: 61 RNPSTGESIQIAASKTAKWKPSSALK 86


>gi|254469062|ref|ZP_05082468.1| DNA-binding protein HU-beta [beta proteobacterium KB13]
 gi|207087872|gb|EDZ65155.1| DNA-binding protein HU-beta [beta proteobacterium KB13]
          Length = 90

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+++I+   G ++ D+ R +      I  +  +G+ + +  F TF V ++ +R G
Sbjct: 1  MNKGELIEAIASATGSTKADAGRALDATIENITKALKKGDTVTLIGFGTFKVSKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT  E+KI  R+V  FKA + LK
Sbjct: 61 RNPQTGAELKIPARKVPSFKAGAGLK 86


>gi|320355050|ref|YP_004196389.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
 gi|320123552|gb|ADW19098.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
          Length = 95

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 55/89 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++++++   +  +++     T+   + D+  RGE+I+I  F +F VK+  S  G
Sbjct: 1  MNKSELIEALAEAMNIPIREAASITNTIIETMSDALARGESIEIRGFGSFVVKEYESYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +++K+ P+++  FK    L++++
Sbjct: 61 RNPKTGEKIKVKPKKLPFFKVGKDLREQV 89


>gi|206890254|ref|YP_002249563.1| DNA-binding protein HU 1 [Thermodesulfovibrio yellowstonii DSM
          11347]
 gi|206742192|gb|ACI21249.1| DNA-binding protein HU 1 [Thermodesulfovibrio yellowstonii DSM
          11347]
          Length = 92

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 54/86 (62%), Gaps = 1/86 (1%)

Query: 7  RSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          +S+L++ +SK+   L++K     +  +F+ + ++  RGE I+I  FA F VKQ+  R+ R
Sbjct: 3  KSELIERVSKKVDILTKKQIETIIDMIFDCMIETLSRGEKIEIRGFANFKVKQRPERIAR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKK 91
          N +T +++K+  +R + FK S  LK+
Sbjct: 63 NPKTGEQIKVPTQRAINFKMSKALKE 88


>gi|126641682|ref|YP_001084666.1| DNA-binding protein HU-beta [Acinetobacter baumannii ATCC 17978]
 gi|169633492|ref|YP_001707228.1| DNA-binding protein HU-beta [Acinetobacter baumannii SDF]
 gi|169796090|ref|YP_001713883.1| DNA-binding protein HU-beta [Acinetobacter baumannii AYE]
 gi|184157983|ref|YP_001846322.1| nucleoid DNA-binding protein [Acinetobacter baumannii ACICU]
 gi|213157177|ref|YP_002319222.1| DNA-binding protein HU [Acinetobacter baumannii AB0057]
 gi|215483545|ref|YP_002325764.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii
          AB307-0294]
 gi|239501896|ref|ZP_04661206.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii
          AB900]
 gi|260550155|ref|ZP_05824369.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624]
 gi|260555139|ref|ZP_05827360.1| integration host factor, beta subunit [Acinetobacter baumannii
          ATCC 19606]
 gi|262278966|ref|ZP_06056751.1| DNA-binding protein HU-beta [Acinetobacter calcoaceticus RUH2202]
 gi|293608200|ref|ZP_06690503.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|299770349|ref|YP_003732375.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter sp. DR1]
 gi|301347498|ref|ZP_07228239.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii
          AB056]
 gi|301511278|ref|ZP_07236515.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii
          AB058]
 gi|301597453|ref|ZP_07242461.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii
          AB059]
 gi|332851741|ref|ZP_08433666.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013150]
 gi|332865884|ref|ZP_08436664.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013113]
 gi|332874442|ref|ZP_08442345.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6014059]
 gi|126387566|gb|ABO12064.1| DNA-binding protein HU-beta [Acinetobacter baumannii ATCC 17978]
 gi|169149017|emb|CAM86894.1| DNA-binding protein HU-beta [Acinetobacter baumannii AYE]
 gi|169152284|emb|CAP01194.1| DNA-binding protein HU-beta [Acinetobacter baumannii]
 gi|183209577|gb|ACC56975.1| Bacterial nucleoid DNA-binding protein [Acinetobacter baumannii
          ACICU]
 gi|213056337|gb|ACJ41239.1| DNA-binding protein HU [Acinetobacter baumannii AB0057]
 gi|213986875|gb|ACJ57174.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii
          AB307-0294]
 gi|260406910|gb|EEX00389.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624]
 gi|260411681|gb|EEX04978.1| integration host factor, beta subunit [Acinetobacter baumannii
          ATCC 19606]
 gi|262259317|gb|EEY78050.1| DNA-binding protein HU-beta [Acinetobacter calcoaceticus RUH2202]
 gi|292828773|gb|EFF87135.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|298700437|gb|ADI91002.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter sp. DR1]
 gi|322508301|gb|ADX03755.1| hupB [Acinetobacter baumannii 1656-2]
 gi|323517927|gb|ADX92308.1| nucleoid DNA-binding protein [Acinetobacter baumannii
          TCDC-AB0715]
 gi|325122069|gb|ADY81592.1| DNA-binding protein HU-beta [Acinetobacter calcoaceticus PHEA-2]
 gi|332729748|gb|EGJ61083.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013150]
 gi|332734934|gb|EGJ66020.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013113]
 gi|332737286|gb|EGJ68210.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6014059]
          Length = 90

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+++ G+S+ D+ + +      I ++  +G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAEKGGVSKTDAGKALDATIASITEALKKGDTVTLVGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E++I   +V  FKA   LK  +
Sbjct: 61 RNPKTGEELQIKATKVPSFKAGKGLKDSV 89


>gi|163943398|ref|YP_001642628.1| histone family protein DNA-binding protein [Bacillus
          weihenstephanensis KBAB4]
 gi|163865595|gb|ABY46653.1| histone family protein DNA-binding protein [Bacillus
          weihenstephanensis KBAB4]
          Length = 90

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K ++++  L++KD+      L + I ++   G+ ++   F TF V+++ +R G
Sbjct: 1  MNKTELTKVVAEKAELTQKDAAAATQALLDTITNALANGDKVQTLGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +   FKA   LK+ +
Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELKEAV 89


>gi|50084585|ref|YP_046095.1| DNA-binding protein HU-beta [Acinetobacter sp. ADP1]
 gi|49530561|emb|CAG68273.1| DNA-binding protein HU-beta [Acinetobacter sp. ADP1]
          Length = 90

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+++ GLS+ D+ + +      + ++  +G+ + +  F TF VK + +R G
Sbjct: 1  MNKSELIDAIAEKGGLSKTDAGKALDATIASVTEALKKGDTVTLVGFGTFSVKDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E++I   +V  FKA   LK  +
Sbjct: 61 RNPKTGEELQIKATKVPSFKAGKGLKDSV 89


>gi|219681418|ref|YP_002467803.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. 5A
          (Acyrthosiphon pisum)]
 gi|257471092|ref|ZP_05635091.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. LSR1
          (Acyrthosiphon pisum)]
 gi|219624261|gb|ACL30416.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. 5A
          (Acyrthosiphon pisum)]
          Length = 92

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  ISK+  LS+  +   + T  + I DS  +GE+++I  F TF V  + SR G
Sbjct: 1  MNKTQLINVISKKSNLSKTQAKLTLETTLSTIIDSLKKGESVQIVGFGTFKVNLRSSRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  F +   LK  I
Sbjct: 61 RNPQTGKEIQIPATKVPSFTSGKTLKNAI 89


>gi|319787633|ref|YP_004147108.1| histone family protein DNA-binding protein [Pseudoxanthomonas
          suwonensis 11-1]
 gi|317466145|gb|ADV27877.1| histone family protein DNA-binding protein [Pseudoxanthomonas
          suwonensis 11-1]
          Length = 90

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 52/86 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++ E  +++ +++R V  + N +  +  +G+A+ +  F TF V+++ +R G
Sbjct: 1  MNKTDLIDAVASEAEITKAEASRAVDAVVNSVTKALKKGDAVTLVGFGTFQVRKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + +KI   +   FKA   LK
Sbjct: 61 RNPKTGETIKIKASKNPAFKAGKALK 86


>gi|187477853|ref|YP_785877.1| integration host factor subunit beta [Bordetella avium 197N]
 gi|115422439|emb|CAJ48964.1| integration host factor beta-subunit [Bordetella avium 197N]
          Length = 119

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 60/102 (58%), Gaps = 3/102 (2%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+ ++S  +  L+ +D+   V T+ + +  +   G+ I+I  F +F + Q+  RV
Sbjct: 1   VTKSELIAALSARYPQLAARDTDLAVKTVLDAMTQALASGQRIEIRGFGSFSLSQRSPRV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           GRN ++ ++V +  ++V  FKA   L++R+  D+ G +   D
Sbjct: 61  GRNPKSGEQVLVPGKQVPHFKAGKELRERV--DLAGNEAGGD 100


>gi|325661342|ref|ZP_08149968.1| hypothetical protein HMPREF0490_00701 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|325472291|gb|EGC75503.1| hypothetical protein HMPREF0490_00701 [Lachnospiraceae bacterium
          4_1_37FAA]
          Length = 91

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+K +S   GL++  +   V  + + I +  ++GE + I+ F TF V+++  R+G
Sbjct: 1  MNKLELIKEVSGRTGLTQVATKDVVEAVLDVITNQLIKGEKVAIAGFGTFEVRERAERMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN Q+ +E+ I   + V FKA   LK ++
Sbjct: 61 RNPQSGEEMLIAASKNVKFKAGKALKDKV 89


>gi|228472724|ref|ZP_04057482.1| DNA-binding protein HU [Capnocytophaga gingivalis ATCC 33624]
 gi|228275775|gb|EEK14541.1| DNA-binding protein HU [Capnocytophaga gingivalis ATCC 33624]
          Length = 90

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 52/85 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I++E GLS+ D+ + +      +  +  +G+ I +  F ++ V +K +R G
Sbjct: 1  MNKTELIDAIAQEAGLSKADAKKALEAFLATVEKTLKKGDKISLVGFGSWSVTEKAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN QT + +KI  ++VV FKA + L
Sbjct: 61 RNPQTGKTIKIPAKKVVKFKAGTEL 85


>gi|319942323|ref|ZP_08016638.1| integration host factor subunit alpha [Sutterella wadsworthensis
           3_1_45B]
 gi|319804196|gb|EFW01096.1| integration host factor subunit alpha [Sutterella wadsworthensis
           3_1_45B]
          Length = 114

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 4   TITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           T+ ++ L +++     GL R  +   V T F  + +   +G+ +KI     F V+ K +R
Sbjct: 14  TLNKASLAEALVDHVAGLDRPHAKLIVETFFELVAEHLEKGDTVKIPGLGNFSVRDKVAR 73

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
            GRNL+T + V I  RRVV F  S  L  R+  ++
Sbjct: 74  PGRNLKTGETVTITERRVVTFHPSGTLNSRVTTNL 108


>gi|304382715|ref|ZP_07365207.1| integration host factor subunit alpha [Prevotella marshii DSM
          16973]
 gi|304336166|gb|EFM02410.1| integration host factor subunit alpha [Prevotella marshii DSM
          16973]
          Length = 96

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   D +  +S+  G + +D+ + + TL + +CD    GE +  + F TF VK++  RV 
Sbjct: 1  MNNKDFITELSRRSGYTPEDTQKLIHTLIDGLCDGFDAGEPVVWAGFGTFEVKKRLERVI 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T Q++ I P+ V+ FK  S  K+R+
Sbjct: 61 TNPSTGQKMLIPPKLVLNFKPVSSAKERL 89


>gi|283780883|ref|YP_003371638.1| histone family protein DNA-binding protein [Pirellula staleyi DSM
           6068]
 gi|283439336|gb|ADB17778.1| histone family protein DNA-binding protein [Pirellula staleyi DSM
           6068]
          Length = 180

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 54/92 (58%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S  +T+ ++VK+IS+E GL++  +   V   F+ I ++ V    I++ +F  F VK++ +
Sbjct: 54  SPVVTKKEIVKTISEEIGLTQLKTKEIVQKTFDAIVETLVEERRIELRNFGVFEVKERAA 113

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R  RN +T Q V +  + VV FK    +++++
Sbjct: 114 RKARNPRTGQPVYVAEKFVVTFKPGKEMEEKV 145


>gi|94495282|ref|ZP_01301863.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58]
 gi|94425548|gb|EAT10568.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58]
          Length = 91

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  SDL ++++ E  +++ D+ + V  +F  I D+A +GE I ++ F  F VK + +R G
Sbjct: 1  MNNSDLAEALAAEHDVTKADARKLVDAVFANIADAAAKGEEISLNGFGKFKVKDQPAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T+  ++I   + + F  +  +K ++
Sbjct: 61 RNPSTSATIQIAASKKLAFTPAKAVKDQL 89


>gi|113461005|ref|YP_719072.1| integration host factor subunit alpha [Haemophilus somnus 129PT]
 gi|170717573|ref|YP_001784659.1| integration host factor subunit alpha [Haemophilus somnus 2336]
 gi|123031334|sp|Q0I3K4|IHFA_HAES1 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|189044702|sp|B0UU60|IHFA_HAES2 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|112823048|gb|ABI25137.1| integration host factor, alpha-subunit [Haemophilus somnus 129PT]
 gi|168825702|gb|ACA31073.1| integration host factor, alpha subunit [Haemophilus somnus 2336]
          Length = 97

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+ +L  S+ ++ GL++ ++ + V   F +I  S   GE +K+S F  F ++ K SR 
Sbjct: 2  ALTKIELKNSLIEQ-GLNKLEAKKVVEGFFEQIRVSLENGEDVKLSGFGNFELRDKSSRP 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + + +  RRVVVF+    L+ R+
Sbjct: 61 GRNPKTGEAIPVSARRVVVFRPGQKLRSRV 90


>gi|251782882|ref|YP_002997185.1| DNA-binding protein HU [Streptococcus dysgalactiae subsp.
          equisimilis GGS_124]
 gi|242391512|dbj|BAH81971.1| DNA-binding protein HU [Streptococcus dysgalactiae subsp.
          equisimilis GGS_124]
 gi|322412211|gb|EFY03119.1| DNA-binding protein HU [Streptococcus dysgalactiae subsp.
          dysgalactiae ATCC 27957]
 gi|323127685|gb|ADX24982.1| DNA-binding protein HU [Streptococcus dysgalactiae subsp.
          equisimilis ATCC 12394]
          Length = 91

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F+ I      GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVDAVFSAIEAFLAEGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT  E++I   +V  FKA   LK
Sbjct: 64 PQTGAEIEIAASKVPAFKAGKALK 87


>gi|325294223|ref|YP_004280737.1| histone family protein DNA-binding protein [Desulfurobacterium
          thermolithotrophum DSM 11699]
 gi|325064671|gb|ADY72678.1| histone family protein DNA-binding protein [Desulfurobacterium
          thermolithotrophum DSM 11699]
          Length = 93

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 53/87 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+SDLV +I+++ G+ +KD+   +    + + ++  +GE ++I  F TF +K++  RV 
Sbjct: 1  MTKSDLVAAIAEKAGIRKKDAEAALNGFIDVVTEALAKGEKVEIRGFGTFLMKERAPRVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T ++V++  +    FK    LK+
Sbjct: 61 RNPRTGEKVEVPAKLSPAFKPGKDLKE 87


>gi|167624683|ref|YP_001674977.1| histone family protein DNA-binding protein [Shewanella
          halifaxensis HAW-EB4]
 gi|212636024|ref|YP_002312549.1| histone-like DNA-binding protein [Shewanella piezotolerans WP3]
 gi|167354705|gb|ABZ77318.1| histone family protein DNA-binding protein [Shewanella
          halifaxensis HAW-EB4]
 gi|212557508|gb|ACJ29962.1| Histone-like bacterial DNA-binding protein [Shewanella
          piezotolerans WP3]
          Length = 90

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + +    + D    G+ I +  F TF V+Q+  R G
Sbjct: 1  MNKSELIEKIASGADISKAAAGRALDSFIGAVTDGLKEGDKIALVGFGTFEVRQRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    +  FKA   LK  +
Sbjct: 61 RNPQTGKEIKIAAANIPAFKAGKALKDAV 89


>gi|332704210|ref|ZP_08424298.1| histone family protein DNA-binding protein [Desulfovibrio
          africanus str. Walvis Bay]
 gi|332554359|gb|EGJ51403.1| histone family protein DNA-binding protein [Desulfovibrio
          africanus str. Walvis Bay]
          Length = 90

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 51/86 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  IS++  +S+ D+ R +    + +  + V    + ++ F TF V+++  R G
Sbjct: 1  MTKADLVAKISEKAAISKADAERSLNAFLDAVGSTLVGEGKLTLTGFGTFAVEERKERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E+KI   +VV F+   +LK
Sbjct: 61 RNPRTGEEIKIPATKVVKFRPGKLLK 86


>gi|167036676|ref|YP_001664254.1| histone family protein DNA-binding protein [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|167039345|ref|YP_001662330.1| histone family protein DNA-binding protein [Thermoanaerobacter
          sp. X514]
 gi|256752345|ref|ZP_05493206.1| histone family protein DNA-binding protein [Thermoanaerobacter
          ethanolicus CCSD1]
 gi|300913985|ref|ZP_07131302.1| histone family protein DNA-binding protein [Thermoanaerobacter
          sp. X561]
 gi|307725332|ref|YP_003905083.1| histone family protein DNA-binding protein [Thermoanaerobacter
          sp. X513]
 gi|320115103|ref|YP_004185262.1| histone family protein DNA-binding protein [Thermoanaerobacter
          brockii subsp. finnii Ako-1]
 gi|166853585|gb|ABY91994.1| histone family protein DNA-binding protein [Thermoanaerobacter
          sp. X514]
 gi|166855510|gb|ABY93918.1| histone family protein DNA-binding protein [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|256748756|gb|EEU61799.1| histone family protein DNA-binding protein [Thermoanaerobacter
          ethanolicus CCSD1]
 gi|300890670|gb|EFK85815.1| histone family protein DNA-binding protein [Thermoanaerobacter
          sp. X561]
 gi|307582393|gb|ADN55792.1| histone family protein DNA-binding protein [Thermoanaerobacter
          sp. X513]
 gi|319928194|gb|ADV78879.1| histone family protein DNA-binding protein [Thermoanaerobacter
          brockii subsp. finnii Ako-1]
          Length = 91

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  I+++  L++KD+ + +      + ++   G+ +++  F TF V+++  R G
Sbjct: 1  MNKADLVAKIAEKSELTKKDAEKALNAFIEAVEEALKNGDKVQLVGFGTFEVRERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+ I   +  +FKA   LK
Sbjct: 61 RNPQTKEEITIPASKAPIFKAGKALK 86


>gi|118602049|ref|YP_908749.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photobacterium damselae
          subsp. piscicida]
 gi|118614789|ref|YP_908572.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photobacterium damselae
          subsp. piscicida]
 gi|134044455|ref|YP_001101716.1| DNA-binding protein HU [Yersinia ruckeri]
 gi|134044925|ref|YP_001102091.1| DNA-binding protein HU [Yersinia pestis biovar Orientalis str.
          IP275]
 gi|134047232|ref|YP_001101901.1| DNA-binding protein HU [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
 gi|165937926|ref|ZP_02226486.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis
          str. IP275]
 gi|229516100|ref|ZP_04405550.1| DNA-binding protein HU-beta [Vibrio cholerae RC9]
 gi|237640210|ref|YP_002891065.1| hypothetical protein peH4H_0022 [Escherichia coli]
 gi|237809930|ref|YP_002894369.1| hypothetical protein pAR060302_0023 [Escherichia coli]
 gi|237810119|ref|YP_002894558.1| hypothetical protein pAM04528_0022 [Salmonella enterica]
 gi|300925740|ref|ZP_07141598.1| DNA-binding protein HU [Escherichia coli MS 182-1]
 gi|118596880|dbj|BAF38184.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photobacterium damselae
          subsp. piscicida]
 gi|118597058|dbj|BAF38361.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photobacterium damselae
          subsp. piscicida]
 gi|133904818|gb|ABO40835.1| DNA-binding protein HU [Yersinia ruckeri]
 gi|133905151|gb|ABO41166.1| DNA-binding protein HU [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
 gi|133905459|gb|ABO42221.1| DNA-binding protein HU [Yersinia pestis biovar Orientalis str.
          IP275]
 gi|165913949|gb|EDR32566.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis
          str. IP275]
 gi|229346880|gb|EEO11848.1| DNA-binding protein HU-beta [Vibrio cholerae RC9]
 gi|229561429|gb|ACQ77632.1| conserved hypothetical protein [Escherichia coli]
 gi|229561603|gb|ACQ77805.1| conserved hypothetical protein [Salmonella enterica]
 gi|229561785|gb|ACQ77986.1| conserved hypothetical protein [Escherichia coli]
 gi|300418162|gb|EFK01473.1| DNA-binding protein HU [Escherichia coli MS 182-1]
 gi|324007578|gb|EGB76797.1| DNA-binding protein HU [Escherichia coli MS 57-2]
 gi|327536459|gb|AEA95292.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Dublin]
 gi|332144534|dbj|BAK19754.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Typhimurium]
          Length = 90

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  ++++  +S+  +   V  L N + +    G  + ++ F TFHVK++ +R G
Sbjct: 1  MNKSELIMKVAEDADISKAKAEAAVNALINSVTEELKAGGTVALTGFGTFHVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I    +  FKA   LK  +
Sbjct: 61 RNPQTGENIQIAAANIPGFKAGKGLKDSV 89


>gi|77919284|ref|YP_357099.1| DNA-binding protein HU-beta, NS1(HU-1) [Pelobacter carbinolicus
          DSM 2380]
 gi|77545367|gb|ABA88929.1| DNA-binding protein HU-beta, NS1(HU-1) [Pelobacter carbinolicus
          DSM 2380]
          Length = 90

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 52/86 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV +++++ GLS+ ++ + +    + I ++   GE + +  F TF V ++ +RVG
Sbjct: 1  MTKADLVNAMAEKAGLSKAETEKAIKAFTDVITEALKAGEKVALVGFGTFSVGERAARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          +N QT +++ I   +V  FK    LK
Sbjct: 61 QNPQTGEKMNIPAAKVPKFKPGKALK 86


>gi|303239804|ref|ZP_07326328.1| histone family protein DNA-binding protein [Acetivibrio
          cellulolyticus CD2]
 gi|302592741|gb|EFL62465.1| histone family protein DNA-binding protein [Acetivibrio
          cellulolyticus CD2]
          Length = 91

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 52/86 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV S++++  LS+KD+ + +      + ++  +G+ I++  F +F V+++ +R G
Sbjct: 1  MNKTDLVASMAEKGDLSKKDAEKALNAFIESVEEALSQGDKIQLVGFGSFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+ I   +  +FK    LK
Sbjct: 61 RNPQTKEEINIPATKAPIFKVGKGLK 86


>gi|94987336|ref|YP_595269.1| nucleoid DNA-binding protein [Lawsonia intracellularis
          PHE/MN1-00]
 gi|94731585|emb|CAJ54948.1| Bacterial nucleoid DNA-binding protein [Lawsonia intracellularis
          PHE/MN1-00]
          Length = 91

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 55/89 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LVKS+S++  +S  ++T  V T  + + +S ++G  +++  F +F VK+     G
Sbjct: 1  MNKSELVKSLSEQANISLDEATLVVNTFVDSMKESLLKGGRVEVRGFGSFKVKEYEGYAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T ++V + P+R+  F+A   LK+ +
Sbjct: 61 RNPRTGEKVVVQPKRLPFFRAGKELKEYL 89


>gi|291518256|emb|CBK73477.1| Bacterial nucleoid DNA-binding protein [Butyrivibrio fibrisolvens
          16/4]
          Length = 90

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+ +  +S+KD+   V      + +   +GE I++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAIASKANISKKDAEASVKAFTEVVAEELKKGEKIQLVGFGTFEVSKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E+KI   +   FKA   LK  I
Sbjct: 61 RNPQTGAEMKIPASKAPKFKAGKALKDSI 89


>gi|218777981|ref|YP_002429299.1| histone family protein DNA-binding protein [Desulfatibacillum
          alkenivorans AK-01]
 gi|218759365|gb|ACL01831.1| histone family protein DNA-binding protein [Desulfatibacillum
          alkenivorans AK-01]
          Length = 95

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+ D+V+ I  + G ++K+S   V  L   I DS   G+ + IS F  F +KQK  R 
Sbjct: 2  ALTKCDIVEKIY-DMGFTKKESVDVVEQLIEIIKDSLQEGDDVLISGFGKFCIKQKDQRR 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN  T +++ +  R+VV FK S  L+  I D
Sbjct: 61 GRNPATGKDLMLRERKVVTFKCSGKLRDLIND 92


>gi|157374683|ref|YP_001473283.1| histone family protein DNA-binding protein [Shewanella sediminis
          HAW-EB3]
 gi|157317057|gb|ABV36155.1| histone family protein DNA-binding protein [Shewanella sediminis
          HAW-EB3]
          Length = 90

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + +    + D    G+ I +  F TF V+Q+  R G
Sbjct: 1  MNKSELIEKIASGADISKAAAGRALDSFIGAVTDGLKEGDKISLVGFGTFEVRQRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    +  FKA   LK  +
Sbjct: 61 RNPQTGKEIKIAAANIPAFKAGKALKDAV 89


>gi|119356085|ref|YP_910729.1| histone family protein DNA-binding protein [Chlorobium
          phaeobacteroides DSM 266]
 gi|119353434|gb|ABL64305.1| histone family protein DNA-binding protein [Chlorobium
          phaeobacteroides DSM 266]
          Length = 91

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++++LV+ I+ + GL++ D+ R V    N + +S   GE + +  F TF   ++  R G
Sbjct: 1  MSKAELVEKIASQAGLTKVDAERAVNAFMNVVTESLKEGEDVTLVGFGTFTTGERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN Q  + + I  ++VV FK    LK  +
Sbjct: 61 RNPQNGETITIAAKKVVKFKPGKALKAGV 89


>gi|313889131|ref|ZP_07822787.1| DNA-binding protein HU [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844871|gb|EFR32276.1| DNA-binding protein HU [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 92

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV SI+++ GL++KD+ + +    + + ++   GE +++  F TF V+Q+ +R G
Sbjct: 1  MNKSELVASIAEKSGLTKKDAEQALNGFISSVQEALADGEKVQLVGFGTFEVRQRKAREG 60

Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93
          RN +  +EV KI   +  VF++   LK+ +
Sbjct: 61 RNPRNPEEVIKIPASKAPVFRSGKALKEAV 90


>gi|322436183|ref|YP_004218395.1| histone family protein DNA-binding protein [Acidobacterium sp.
          MP5ACTX9]
 gi|321163910|gb|ADW69615.1| histone family protein DNA-binding protein [Acidobacterium sp.
          MP5ACTX9]
          Length = 108

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  ++    L+R+D    V  LF+ +  +   G+ I+I  F +F  +Q+ SR+G
Sbjct: 1  MTKADLVDKVTSLGDLTRRDGEVIVDLLFDSVIGALKSGDKIEIRGFGSFRTRQRNSRIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T  +V +  ++V  FK S  L+
Sbjct: 61 RNPKTGAKVDVPAKKVPFFKPSKELR 86


>gi|328949956|ref|YP_004367291.1| histone family protein DNA-binding protein [Marinithermus
          hydrothermalis DSM 14884]
 gi|328450280|gb|AEB11181.1| histone family protein DNA-binding protein [Marinithermus
          hydrothermalis DSM 14884]
          Length = 97

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 51/91 (56%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+T++DLV  +++  GL +KD    V    +E+ D   R   ++++ F TF V+++ +R
Sbjct: 5  KTVTKADLVNHVAETTGLKKKDVKAVVDAFLSEVADMLDRDYKVQLTGFGTFEVRKRKAR 64

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           G    T +++KI   +   FK    LK+++
Sbjct: 65 TGVKPGTTEKIKIPASKYPAFKPGKALKEKV 95


>gi|262370473|ref|ZP_06063799.1| DNA-binding protein HU-beta [Acinetobacter johnsonii SH046]
 gi|262314815|gb|EEY95856.1| DNA-binding protein HU-beta [Acinetobacter johnsonii SH046]
          Length = 90

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+++ GLS+ D+ + +      I ++   G+ + +  F TF+VK++ +R G
Sbjct: 1  MNKSELIDAIAEKGGLSKTDAGKALDATIASITEALKSGDTVTLVGFGTFNVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I   +V  FKA   LK  +
Sbjct: 61 RNPQTGATLEIKASKVPSFKAGKGLKDSV 89


>gi|228942908|ref|ZP_04105421.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228976135|ref|ZP_04136633.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228783586|gb|EEM31667.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228816760|gb|EEM62872.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner
          ATCC 10792]
          Length = 93

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K ++++  L++KD+      + N I  +    E ++I  F TF V+++ +R G
Sbjct: 4  MNKTELTKVVAEKAELTQKDAAAATQAVLNTITSALTNEEKVQILGFGTFEVRERSARTG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +   FKA   LK+ +
Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKELKEAV 92


>gi|293374971|ref|ZP_06621266.1| DNA-binding protein HU [Turicibacter sanguinis PC909]
 gi|325843341|ref|ZP_08167924.1| DNA-binding protein HU-beta [Turicibacter sp. HGF1]
 gi|292646381|gb|EFF64396.1| DNA-binding protein HU [Turicibacter sanguinis PC909]
 gi|325489370|gb|EGC91743.1| DNA-binding protein HU-beta [Turicibacter sp. HGF1]
          Length = 90

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + RS LV  I+++  L++KD+ +F++     + ++    + + +  F TF V+++ +R G
Sbjct: 1  MNRSQLVDKIAEKAELTKKDADKFLSAYIEAVTEALQADDKVALVGFGTFEVRERAARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RNL T + ++I+  +   FKA   LK
Sbjct: 61 RNLHTGETIEIEASKYPAFKAGKALK 86


>gi|312143872|ref|YP_003995318.1| histone family protein DNA-binding protein [Halanaerobium sp.
          'sapolanicus']
 gi|311904523|gb|ADQ14964.1| histone family protein DNA-binding protein [Halanaerobium sp.
          'sapolanicus']
          Length = 99

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 59/98 (60%), Gaps = 10/98 (10%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA---------IKISSFATFH 55
          +T+++L+ ++++  G+++KD+   +  + + I +  +R EA         +++  F TF 
Sbjct: 1  MTKNELIDAVAENTGITKKDTGEVINNMIDTIMNH-LRAEAKKPEDDRDNVQLIGFGTFE 59

Query: 56 VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          V+ + +R GRN QTN+E++I  R+V VF++    K+ +
Sbjct: 60 VRDRSARKGRNPQTNEEIQIPARKVPVFRSGKSFKETV 97


>gi|288958754|ref|YP_003449095.1| DNA-binding protein HU-beta [Azospirillum sp. B510]
 gi|288911062|dbj|BAI72551.1| DNA-binding protein HU-beta [Azospirillum sp. B510]
          Length = 90

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 51/86 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  +++  GLS+ D+T+ V  +F+ I +S   G+ +++  F TF V ++ +  G
Sbjct: 1  MNKNDLVAHVAEASGLSKTDATKAVDAVFDSIAESLKNGDEVRLVGFGTFAVAERPATEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +++ I   +   FKA   LK
Sbjct: 61 RNPRTGEKIDIPASKQPKFKAGKTLK 86


>gi|242279078|ref|YP_002991207.1| histone family protein DNA-binding protein [Desulfovibrio
          salexigens DSM 2638]
 gi|242121972|gb|ACS79668.1| histone family protein DNA-binding protein [Desulfovibrio
          salexigens DSM 2638]
          Length = 90

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 53/86 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  I+++ G+++ D+ R +    + + ++ V    + ++ F TF V ++  RVG
Sbjct: 1  MTKAELVVKIAEKAGMTKADAERCLNYFLDTVEETLVNEGKLTLTGFGTFQVDERKERVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E+KI   +VV F+   +LK
Sbjct: 61 RNPRTGEEIKIPACKVVKFRPGKLLK 86


>gi|15675394|ref|NP_269568.1| histone-like DNA-binding protein [Streptococcus pyogenes M1 GAS]
 gi|21910682|ref|NP_664950.1| putative histone-like DNA-binding protein [Streptococcus pyogenes
          MGAS315]
 gi|28895628|ref|NP_801978.1| histone-like DNA-binding protein [Streptococcus pyogenes SSI-1]
 gi|50914589|ref|YP_060561.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10394]
 gi|71903824|ref|YP_280627.1| DNA-binding protein HU [Streptococcus pyogenes MGAS6180]
 gi|71911036|ref|YP_282586.1| DNA-binding protein HU [Streptococcus pyogenes MGAS5005]
 gi|94988847|ref|YP_596948.1| DNA-binding protein HU [Streptococcus pyogenes MGAS9429]
 gi|94990748|ref|YP_598848.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10270]
 gi|94992738|ref|YP_600837.1| DNA-binding protein HU [Streptococcus pyogenes MGAS2096]
 gi|94994725|ref|YP_602823.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10750]
 gi|139473485|ref|YP_001128201.1| DNA-binding protein HU [Streptococcus pyogenes str. Manfredo]
 gi|209559658|ref|YP_002286130.1| DNA-binding protein HU [Streptococcus pyogenes NZ131]
 gi|306827059|ref|ZP_07460357.1| DNA-binding protein HU [Streptococcus pyogenes ATCC 10782]
 gi|61222559|sp|P0A3I0|DBH_STRP3 RecName: Full=DNA-binding protein HU
 gi|73919007|sp|Q5XB35|DBH_STRP6 RecName: Full=DNA-binding protein HU
 gi|73919008|sp|P0C097|DBH_STRP8 RecName: Full=DNA-binding protein HU
 gi|76365063|sp|P0C0H2|DBH_STRPY RecName: Full=DNA-binding protein HU
 gi|81175249|sp|P0C0H3|DBH_STRP1 RecName: Full=DNA-binding protein HU
 gi|5209328|gb|AAD40808.1|L38946_1 histone-like DNA-binding protein [Streptococcus pyogenes]
 gi|13622579|gb|AAK34289.1| histone-like DNA-binding protein [Streptococcus pyogenes M1 GAS]
 gi|21904884|gb|AAM79753.1| putative histone-like DNA-binding protein [Streptococcus pyogenes
          MGAS315]
 gi|28810877|dbj|BAC63811.1| putative histone-like DNA-binding protein [Streptococcus pyogenes
          SSI-1]
 gi|50903663|gb|AAT87378.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10394]
 gi|71802919|gb|AAX72272.1| DNA-binding protein HU [Streptococcus pyogenes MGAS6180]
 gi|71853818|gb|AAZ51841.1| DNA-binding protein HU [Streptococcus pyogenes MGAS5005]
 gi|94542355|gb|ABF32404.1| DNA-binding protein HU [Streptococcus pyogenes MGAS9429]
 gi|94544256|gb|ABF34304.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10270]
 gi|94546246|gb|ABF36293.1| DNA-binding protein HU [Streptococcus pyogenes MGAS2096]
 gi|94548233|gb|ABF38279.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10750]
 gi|134271732|emb|CAM29965.1| DNA-binding protein HU [Streptococcus pyogenes str. Manfredo]
 gi|209540859|gb|ACI61435.1| DNA-binding protein HU [Streptococcus pyogenes NZ131]
 gi|304430805|gb|EFM33816.1| DNA-binding protein HU [Streptococcus pyogenes ATCC 10782]
          Length = 91

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F+ I      GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVDAVFSTIEAFLAEGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT  E++I   +V  FKA   LK
Sbjct: 64 PQTGAEIEIAASKVPAFKAGKALK 87


>gi|289579291|ref|YP_003477918.1| histone family protein DNA-binding protein [Thermoanaerobacter
          italicus Ab9]
 gi|297545442|ref|YP_003677744.1| histone family protein DNA-binding protein [Thermoanaerobacter
          mathranii subsp. mathranii str. A3]
 gi|307264995|ref|ZP_07546556.1| histone family protein DNA-binding protein [Thermoanaerobacter
          wiegelii Rt8.B1]
 gi|326390096|ref|ZP_08211658.1| histone family protein DNA-binding protein [Thermoanaerobacter
          ethanolicus JW 200]
 gi|289529004|gb|ADD03356.1| histone family protein DNA-binding protein [Thermoanaerobacter
          italicus Ab9]
 gi|296843217|gb|ADH61733.1| histone family protein DNA-binding protein [Thermoanaerobacter
          mathranii subsp. mathranii str. A3]
 gi|306919980|gb|EFN50193.1| histone family protein DNA-binding protein [Thermoanaerobacter
          wiegelii Rt8.B1]
 gi|325993961|gb|EGD52391.1| histone family protein DNA-binding protein [Thermoanaerobacter
          ethanolicus JW 200]
          Length = 91

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  I+++  L++KD+ + +      + ++   G+ +++  F TF V+++  R G
Sbjct: 1  MNKADLVAKIAEKSELTKKDAEKALNAFIEAVEEALKNGDKVQLVGFGTFEVRERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+ I   +  +FKA   LK
Sbjct: 61 RNPQTREEITIPASKAPIFKAGKALK 86


>gi|54295550|ref|YP_127965.1| hypothetical protein lpl2637 [Legionella pneumophila str. Lens]
 gi|54298700|ref|YP_125069.1| integration host factor subunit alpha [Legionella pneumophila
          str. Paris]
 gi|148358554|ref|YP_001249761.1| integration host factor subunit alpha [Legionella pneumophila
          str. Corby]
 gi|296108357|ref|YP_003620058.1| integration host factor (IHF) alpha subunit [Legionella
          pneumophila 2300/99 Alcoy]
 gi|81679131|sp|Q5WT88|IHFA_LEGPL RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|81679385|sp|Q5X1H9|IHFA_LEGPA RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|172047871|sp|A5IAL5|IHFA_LEGPC RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|53752485|emb|CAH13917.1| hypothetical protein lpp2764 [Legionella pneumophila str. Paris]
 gi|53755382|emb|CAH16878.1| hypothetical protein lpl2637 [Legionella pneumophila str. Lens]
 gi|148280327|gb|ABQ54415.1| integration host factor (IHF) alpha subunit [Legionella
          pneumophila str. Corby]
 gi|295650259|gb|ADG26106.1| integration host factor (IHF) alpha subunit [Legionella
          pneumophila 2300/99 Alcoy]
 gi|307611586|emb|CBX01268.1| hypothetical protein LPW_29661 [Legionella pneumophila 130b]
          Length = 97

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           ++++ + +++  E  L++  +   V   F E+  +   G+ +K+S F  F ++ K  R 
Sbjct: 3  ALSKAIMAETLCDELKLNKPVAKEMVENFFEELRHALENGQHVKLSGFGNFTLRDKPQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ ++ RRVV FK    LK +I
Sbjct: 63 GRNPKTGEEIPVEARRVVTFKPGLKLKTKI 92


>gi|313891625|ref|ZP_07825232.1| DNA-binding protein HU [Dialister microaerophilus UPII 345-E]
 gi|329122095|ref|ZP_08250703.1| DNA-binding protein HU [Dialister micraerophilus DSM 19965]
 gi|313119903|gb|EFR43088.1| DNA-binding protein HU [Dialister microaerophilus UPII 345-E]
 gi|327466902|gb|EGF12418.1| DNA-binding protein HU [Dialister micraerophilus DSM 19965]
          Length = 92

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 56/89 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  +++KD+ + V  + + I D+ V+GE +++  F TF V+++ +R G
Sbjct: 1  MNKTELITAVAQKAEMTKKDAEKAVKAVIDVISDAMVKGEKVQLIGFGTFEVRERKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T + +KI   +   F+ S  LK+++
Sbjct: 61 HNPSTQKPIKIPASKAPAFRVSKQLKEKV 89


>gi|171778666|ref|ZP_02919762.1| hypothetical protein STRINF_00614 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
 gi|306833010|ref|ZP_07466142.1| DNA-binding protein HU [Streptococcus bovis ATCC 700338]
 gi|320546358|ref|ZP_08040675.1| DNA-binding protein HU [Streptococcus equinus ATCC 9812]
 gi|171282623|gb|EDT48047.1| hypothetical protein STRINF_00614 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
 gi|304424909|gb|EFM28043.1| DNA-binding protein HU [Streptococcus bovis ATCC 700338]
 gi|320449012|gb|EFW89738.1| DNA-binding protein HU [Streptococcus equinus ATCC 9812]
          Length = 91

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F+ I      GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAVAVDAVFSAIESFLSEGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E++I   +V  FKA   LK
Sbjct: 64 PQTGEEIEIAASKVPAFKAGKALK 87


>gi|83644982|ref|YP_433417.1| nucleoid DNA-binding protein [Hahella chejuensis KCTC 2396]
 gi|83633025|gb|ABC28992.1| Bacterial nucleoid DNA-binding protein [Hahella chejuensis KCTC
          2396]
          Length = 90

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++    +S+  + R +  +   + ++  +GE + +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAVAASADISKAAAGRALDAVVESVTEALKKGEQVTLIGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   +KID  +V  FKA   LK  +
Sbjct: 61 RNPQTGATIKIDAAKVPSFKAGKALKDAV 89


>gi|117926190|ref|YP_866807.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
 gi|117609946|gb|ABK45401.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
          Length = 91

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+ +I+ + GL+++ +   V  +FNEI  +  +GE +++  F  F  + +  R  
Sbjct: 1  MTKSELILTIAAQKGLTKQAAAMVVDMVFNEIGKAMAKGERVELRGFGVFEPRARKPRAA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T ++V ++ +  V FK    ++KR+
Sbjct: 61 RNPKTGEKVAVESKTAVHFKPGLDMRKRV 89


>gi|89069006|ref|ZP_01156387.1| integration host factor beta subunit [Oceanicola granulosus
          HTCC2516]
 gi|89045375|gb|EAR51440.1| integration host factor beta subunit [Oceanicola granulosus
          HTCC2516]
          Length = 93

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L ++D  + V T+F+ I  +   G+ +++  F  F VK++ +R+
Sbjct: 1  MIRSELIQKIADDNPHLYQRDVEKIVNTVFDRIIGAMANGDRVELRGFGAFSVKRREARM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V+++ + V  FK   +L+ R+ D
Sbjct: 61 GRNPRTGEAVEVEEKHVPFFKTGKLLRDRLND 92


>gi|197121150|ref|YP_002133101.1| histone family protein DNA-binding protein [Anaeromyxobacter sp.
          K]
 gi|220915851|ref|YP_002491155.1| histone family protein DNA-binding protein [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|196170999|gb|ACG71972.1| histone family protein DNA-binding protein [Anaeromyxobacter sp.
          K]
 gi|219953705|gb|ACL64089.1| histone family protein DNA-binding protein [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 115

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+  +  + G+++K +   + T+F+ + D+  +GE I+I     FHVK      G
Sbjct: 1  MLKSDLINILVVKRGVTQKQAEATIETIFDSMKDALCKGENIEIRGLGAFHVKHYDGYQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + + P+R ++F+    L+ R+
Sbjct: 61 RNPKTGEVIPVKPKRGILFRTGKELRDRV 89


>gi|33152141|ref|NP_873494.1| DNA-binding protein HU [Haemophilus ducreyi 35000HP]
 gi|33148363|gb|AAP95883.1| DNA-binding protein HU [Haemophilus ducreyi 35000HP]
          Length = 90

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I  +  LS+KD+   +    N I  S   G+++++  F TF V ++  R+G
Sbjct: 1  MNKTELIDAIVADTALSKKDAKAALEATLNAISGSLKNGDSVQLIGFGTFKVNERSERIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E+KI   +V  F A   LK
Sbjct: 61 RNPRTGEEIKIAASKVPAFVAGKALK 86


>gi|325288394|ref|YP_004264575.1| bacterial nucleoid protein Hbs [Syntrophobotulus glycolicus DSM
          8271]
 gi|324963795|gb|ADY54574.1| bacterial nucleoid protein Hbs [Syntrophobotulus glycolicus DSM
          8271]
          Length = 90

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++   ++KD+ + V  +   I  +   G+ +++  F TF VK++  RVG
Sbjct: 1  MNKAELVSAVAEKIDFTKKDAEKAVAAVIETISQALAAGDKVQLVGFGTFEVKKREERVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+ I    V  FKA   LK
Sbjct: 61 RNPQTKEEIIIPACNVPGFKAGKALK 86


>gi|86157126|ref|YP_463911.1| histone-like DNA-binding protein [Anaeromyxobacter dehalogenans
          2CP-C]
 gi|85773637|gb|ABC80474.1| Histone-like DNA-binding protein [Anaeromyxobacter dehalogenans
          2CP-C]
          Length = 116

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+  +  + G+++K +   + T+F+ + D+  +GE I+I     FHVK      G
Sbjct: 1  MLKSDLINILVVKRGVTQKQAEATIETIFDSMKDALCKGENIEIRGLGAFHVKHYDGYQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + + P+R ++F+    L+ R+
Sbjct: 61 RNPKTGEVIPVKPKRGILFRTGKELRDRV 89


>gi|123430771|ref|XP_001307951.1| DNA-binding protein HU [Trichomonas vaginalis G3]
 gi|121889606|gb|EAX95021.1| DNA-binding protein HU, putative [Trichomonas vaginalis G3]
          Length = 92

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV SI+++ GL++KD+ + +      + ++   GE +++  F TF V+Q+ +R G
Sbjct: 1  MNKSELVASIAEKSGLTKKDAEQALNGFITSVQEALADGEKVQLVGFGTFEVRQRKAREG 60

Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93
          RN +  +EV KI   +  VF++   LK+ +
Sbjct: 61 RNPRNPEEVIKIPASKAPVFRSGKALKEAV 90


>gi|320108132|ref|YP_004183722.1| histone family protein DNA-binding protein [Terriglobus saanensis
          SP1PR4]
 gi|319926653|gb|ADV83728.1| histone family protein DNA-binding protein [Terriglobus saanensis
          SP1PR4]
          Length = 107

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  ++    L+R+D    V TLF  +  +    + ++I  F +F  +Q+ SR+G
Sbjct: 1  MTKADLVDKVTDLGDLTRRDGEIIVETLFEGVVSALKADDKVEIRGFGSFRTRQRNSRIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + V +  +RV  FK S  L+
Sbjct: 61 RNPKTGERVDVPAKRVPFFKPSKELR 86


>gi|52842915|ref|YP_096714.1| integration host factor subunit alpha [Legionella pneumophila
          subsp. pneumophila str. Philadelphia 1]
 gi|81680386|sp|Q5ZS10|IHFA_LEGPH RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|52630026|gb|AAU28767.1| integration host factor (IHF) alpha subunit [Legionella
          pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 99

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           ++++ + +++  E  L++  +   V   F E+  +   G+ +K+S F  F ++ K  R 
Sbjct: 5  ALSKAIMAETLCDELKLNKPVAKEMVENFFEELRHALENGQHVKLSGFGNFTLRDKPQRP 64

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ ++ RRVV FK    LK +I
Sbjct: 65 GRNPKTGEEIPVEARRVVTFKPGLKLKTKI 94


>gi|322515115|ref|ZP_08068120.1| DNA-binding protein HU [Actinobacillus ureae ATCC 25976]
 gi|322118880|gb|EFX91067.1| DNA-binding protein HU [Actinobacillus ureae ATCC 25976]
          Length = 90

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+    LS+KD+   +      I +S  +G+A+++  F TF V ++ +R G
Sbjct: 1  MNKTELIDAIAAGAELSKKDAKAALEATLEAISESLKKGDAVQLIGFGTFKVNERNARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E+KI   +V  F A   LK
Sbjct: 61 RNPRTGEEIKIAAAKVPAFVAGKALK 86


>gi|269837198|ref|YP_003319426.1| histone family protein DNA-binding protein [Sphaerobacter
          thermophilus DSM 20745]
 gi|269786461|gb|ACZ38604.1| histone family protein DNA-binding protein [Sphaerobacter
          thermophilus DSM 20745]
          Length = 97

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 49/87 (56%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +SDLVK+++++        +  V   F+ I ++   G+ + I+ F TF + ++G+R GRN
Sbjct: 3  KSDLVKAVARKVQQPESHVSTVVNATFDAIREALASGDEVAITGFGTFRISERGAREGRN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT + + I  RR   FK  + LK+ +
Sbjct: 63 PQTGERITIPSRRSPSFKPGTQLKRAV 89


>gi|238899357|ref|YP_002925039.1| DNA-binding protein [Candidatus Hamiltonella defensa 5AT
          (Acyrthosiphon pisum)]
 gi|229467118|gb|ACQ68891.1| DNA-binding protein [Candidatus Hamiltonella defensa 5AT
          (Acyrthosiphon pisum)]
          Length = 113

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 51/86 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ +  + GL++  ST  VT +F+ I DS  + E ++I  FATF V  +  R+ 
Sbjct: 1  MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIDSLGKKEPVQIIRFATFKVSHRSERMS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          R+ +T +++K   R V VF A   LK
Sbjct: 61 RHPKTGEKIKTPAREVPVFSAGKRLK 86


>gi|229106597|ref|ZP_04236839.1| DNA-binding protein HU [Bacillus cereus Rock3-28]
 gi|228676835|gb|EEL31439.1| DNA-binding protein HU [Bacillus cereus Rock3-28]
          Length = 93

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K ++ +  L++KD+      + + I ++    E ++I  F TF V+++ +R G
Sbjct: 4  MNKTELIKVVADKAELTQKDAATATQAVLDAITNTLANEEKVQILGFGTFEVRERSARTG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +   FKA   LK+ +
Sbjct: 64 RNPQTGEEIQIAASKAPAFKAGKELKEAV 92


>gi|121610067|ref|YP_997874.1| histone family protein DNA-binding protein [Verminephrobacter
          eiseniae EF01-2]
 gi|121554707|gb|ABM58856.1| histone family protein DNA-binding protein [Verminephrobacter
          eiseniae EF01-2]
          Length = 112

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 4  TITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          ++TRSDLV+ ++     L+R D+   V  + + +  + VRG  I+I  F +F V     R
Sbjct: 5  SMTRSDLVEELAARLTHLTRHDAESAVKAILDAVGQALVRGHRIEIRGFGSFSVSHHPPR 64

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +GRN ++ + V I  +RV  FK    L++ +
Sbjct: 65 MGRNPRSGEAVAIPQKRVPHFKPGKALREAV 95


>gi|3334235|sp|P95516|IHFA_PASHA RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|1842235|gb|AAC44843.1| integration host factor Alpha subunit [Mannheimia haemolytica]
          Length = 99

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 57/90 (63%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+ ++ +++ ++FGL ++ +  FV   F EI  S   GE +K+S F  F +++K +R 
Sbjct: 3  ALTKIEIAENLIEKFGLEKRVANEFVELFFEEIRSSLENGEEVKLSGFGNFSLREKKARP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  RRVVVFKA   L++R+
Sbjct: 63 GRNPKTGENVAVSARRVVVFKAGQKLRERV 92


>gi|304415444|ref|ZP_07396093.1| integration host factor (IHF) DNA-binding protein alpha subunit
          [Candidatus Regiella insecticola LSR1]
 gi|304282708|gb|EFL91222.1| integration host factor (IHF) DNA-binding protein alpha subunit
          [Candidatus Regiella insecticola LSR1]
          Length = 97

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 51/90 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+ ++ ++++++ G+ +  + + V + F+EIC        +K+S F  F V+ K  R 
Sbjct: 2  ALTKDNIAENLTEKLGIDKPVAKQLVESFFDEICLILKEERELKVSKFGNFVVRDKPQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + + I  R VV FK+   LKK +
Sbjct: 62 GRNPKTGEGIPISARSVVTFKSGQRLKKEV 91


>gi|116629549|ref|YP_814721.1| nucleoid DNA-binding protein [Lactobacillus gasseri ATCC 33323]
 gi|238852699|ref|ZP_04643109.1| DNA-binding protein HU [Lactobacillus gasseri 202-4]
 gi|282852068|ref|ZP_06261426.1| DNA-binding protein HU [Lactobacillus gasseri 224-1]
 gi|300361578|ref|ZP_07057755.1| DNA-binding protein HU [Lactobacillus gasseri JV-V03]
 gi|311110808|ref|ZP_07712205.1| DNA-binding protein HU [Lactobacillus gasseri MV-22]
 gi|116095131|gb|ABJ60283.1| bacterial nucleoid protein Hbs [Lactobacillus gasseri ATCC 33323]
 gi|238834845|gb|EEQ27072.1| DNA-binding protein HU [Lactobacillus gasseri 202-4]
 gi|282556828|gb|EFB62432.1| DNA-binding protein HU [Lactobacillus gasseri 224-1]
 gi|300354197|gb|EFJ70068.1| DNA-binding protein HU [Lactobacillus gasseri JV-V03]
 gi|311065962|gb|EFQ46302.1| DNA-binding protein HU [Lactobacillus gasseri MV-22]
          Length = 91

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV  ++ +  L++K+    V  +F+ I +   +GE +++  F TF V+ + +R GRN
Sbjct: 4  KAELVSEVAAKTDLTKKEVAAAVDAIFSSIQEDLAKGEKVQLIGFGTFEVRHRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT  E++I   +V  FK    LK
Sbjct: 64 PQTGAEIEIPASKVPAFKPGKALK 87


>gi|46199286|ref|YP_004953.1| putative DNA binding protein [Thermus thermophilus HB27]
 gi|55981318|ref|YP_144615.1| DNA-binding protein HU [Thermus thermophilus HB8]
 gi|46196911|gb|AAS81326.1| putative DNA binding protein [Thermus thermophilus HB27]
 gi|55772731|dbj|BAD71172.1| DNA-binding protein HU (DNA-binding protein II) [Thermus
          thermophilus HB8]
          Length = 97

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 51/91 (56%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+T++DLV  +++  GL +KD    V  L  ++ ++   G  ++++ F TF V+++ +R
Sbjct: 5  KTVTKADLVDQVAQATGLKKKDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKAR 64

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           G    T +++KI   +   FK    LK ++
Sbjct: 65 TGVKPGTKEKIKIPATQYPAFKPGKALKDKV 95


>gi|229170573|ref|ZP_04298221.1| DNA-binding protein HU [Bacillus cereus AH621]
 gi|228612922|gb|EEK70099.1| DNA-binding protein HU [Bacillus cereus AH621]
          Length = 93

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K ++++  L++KD+      + + I ++    E ++I  F TF V+++ +R G
Sbjct: 4  MNKTELTKMVAEKAELTQKDAAVATQAVLDAITNALANEEKVQILGFGTFEVRERSARTG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FKA   LK  +
Sbjct: 64 RNPQTGEEMQIAASKVPAFKAGKELKAAV 92


>gi|93006477|ref|YP_580914.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis
          K5]
 gi|92394155|gb|ABE75430.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis
          K5]
          Length = 90

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ SI+++ GL++  +   +  +   + ++   G++I +  F TF VK + +R G
Sbjct: 1  MNKSELIDSIAEKSGLNKTQAGDALNAVMESVGEALEAGDSISLVGFGTFSVKDRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E+ I   +V  FKA   LK+R+
Sbjct: 61 RNPKTGEELSIPASKVPSFKAGKNLKERL 89


>gi|254470707|ref|ZP_05084110.1| integration host factor, beta subunit [Pseudovibrio sp. JE062]
 gi|211959849|gb|EEA95046.1| integration host factor, beta subunit [Pseudovibrio sp. JE062]
          Length = 99

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV++I+ +   L ++D    V  + +E+ ++ +RG+ +++  F  F VK + +RV
Sbjct: 1  MIKSELVQTIAERNPHLYQRDVENIVNAILDEVTEALMRGDRVELRGFGAFSVKNRPARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T Q+V++  + V  FK    +++R+ D
Sbjct: 61 GRNPRTGQKVEVGEKFVPFFKTGKEMRERLND 92


>gi|188584712|ref|YP_001916257.1| nucleoid protein Hbs [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349399|gb|ACB83669.1| nucleoid protein Hbs [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 92

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 55/89 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  +++   +++KD+ + V  +F+ I D   + + +++  F TF V+++ +R G
Sbjct: 1  MNKTELISKVAERSEMTKKDTEKVVNEVFDVISDQLAKEDKVQLIGFGTFEVRERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T + ++I+  +V  FKA   LK+++
Sbjct: 61 RNPSTGEVIQIEATKVPAFKAGKALKEKV 89


>gi|332971263|gb|EGK10226.1| DNA-binding protein HU [Desmospora sp. 8437]
          Length = 91

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 53/87 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K +++E G S+ ++ + V  + ++I ++  RGE + +  F  F V+++ +R+ 
Sbjct: 1  MNKTELTKRVAQETGKSKTEAGQMVDVVLDQISEALQRGEKVSLFGFGNFEVRERAARMA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T + + ++ +R+  FK    LK+
Sbjct: 61 RNPKTGETIHVEAKRIPAFKPGKQLKE 87


>gi|15616661|ref|NP_239873.1| DNA-binding protein HU-alpha [Buchnera aphidicola str. APS
          (Acyrthosiphon pisum)]
 gi|219681974|ref|YP_002468358.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. Tuc7
          (Acyrthosiphon pisum)]
 gi|11131509|sp|P57144|DBH_BUCAI RecName: Full=DNA-binding protein HU
 gi|25294374|pir||G84933 DNA-binding protein hu-alpha [imported] - Buchnera sp.  (strain
          APS)
 gi|10038724|dbj|BAB12759.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. APS
          (Acyrthosiphon pisum)]
 gi|219621707|gb|ACL29863.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. Tuc7
          (Acyrthosiphon pisum)]
 gi|311085779|gb|ADP65861.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. LL01
          (Acyrthosiphon pisum)]
 gi|311086354|gb|ADP66435.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. TLW03
          (Acyrthosiphon pisum)]
 gi|311086932|gb|ADP67012.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. JF99
          (Acyrthosiphon pisum)]
 gi|311087520|gb|ADP67599.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. JF98
          (Acyrthosiphon pisum)]
          Length = 92

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  ISK+  LS+  +   + T  + I DS  +GE+++I  F TF V  + SR G
Sbjct: 1  MNKTQLINVISKKSNLSKIQAKLTLETTLSTIIDSLKKGESVQIVGFGTFKVNLRSSRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  F +   LK  I
Sbjct: 61 RNPQTGKEIQIPATKVPSFTSGKTLKNAI 89


>gi|323136116|ref|ZP_08071199.1| integration host factor, beta subunit [Methylocystis sp. ATCC
          49242]
 gi|322399207|gb|EFY01726.1| integration host factor, beta subunit [Methylocystis sp. ATCC
          49242]
          Length = 96

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 58/96 (60%), Gaps = 1/96 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ I++  G L ++D    V+T+ +EI  +  RG+ +++  F  F VK++ +R 
Sbjct: 1  MIKSELIQRIARRNGHLYQRDVETIVSTILDEITAALARGDRVELRGFGAFSVKKRDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T  +V +  + V  FK    +++R+ ++ +G
Sbjct: 61 GRNPRTGAQVSVQEKSVPFFKTGKEMRERLNENYQG 96


>gi|261492544|ref|ZP_05989097.1| integration host factor alpha subunit [Mannheimia haemolytica
          serotype A2 str. BOVINE]
 gi|261311703|gb|EEY12853.1| integration host factor alpha subunit [Mannheimia haemolytica
          serotype A2 str. BOVINE]
          Length = 99

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 58/90 (64%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+ ++ +++ ++FGL ++ + +FV   F EI  S   GE +K+S F  F +++K +R 
Sbjct: 3  ALTKIEIAENLIEKFGLEKRVAKQFVELFFEEIRSSLENGEEVKLSGFGNFSLREKKARP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  RRVVVFKA   L++R+
Sbjct: 63 GRNPKTGENVAVSARRVVVFKAGQKLRERV 92


>gi|148653424|ref|YP_001280517.1| histone family protein DNA-binding protein [Psychrobacter sp.
          PRwf-1]
 gi|148572508|gb|ABQ94567.1| histone family protein DNA-binding protein [Psychrobacter sp.
          PRwf-1]
          Length = 90

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV SI+++ GL++  +   +  +   + ++    + I +  F TF VK++ +R G
Sbjct: 1  MNKSELVDSIAEKSGLNKTQAADALNAMMESVGEALENNDTISLVGFGTFSVKERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  E++I   RV  FKA   LK R+
Sbjct: 61 RNPKTGDELQIPASRVPHFKAGKGLKDRL 89


>gi|295694764|ref|YP_003588002.1| histone family protein DNA-binding protein [Bacillus tusciae DSM
          2912]
 gi|295410366|gb|ADG04858.1| histone family protein DNA-binding protein [Bacillus tusciae DSM
          2912]
          Length = 87

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 50/83 (60%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          +L+  +++  GL +K++   V ++F+ I ++   GE +++  F TF  +++ +R+GRN Q
Sbjct: 2  ELIAKVAERSGLKKKEAEAAVNSVFDVIGEALAGGEKVQLVGFGTFEPRRRAARIGRNPQ 61

Query: 69 TNQEVKIDPRRVVVFKASSILKK 91
          T +E+ I    V  FK  + LK+
Sbjct: 62 TGEEISIPESVVPAFKPGNKLKE 84


>gi|238897931|ref|YP_002923611.1| HU, DNA-binding transcriptional regulator, alpha subunit-2
          [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
          pisum)]
 gi|238898508|ref|YP_002924189.1| DNA-binding protein HU-alpha (HU-2) [Candidatus Hamiltonella
          defensa 5AT (Acyrthosiphon pisum)]
 gi|229465689|gb|ACQ67463.1| HU, DNA-binding transcriptional regulator, alpha subunit-2
          [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
          pisum)]
 gi|229466267|gb|ACQ68041.1| DNA-binding protein HU-alpha (HU-2) [Candidatus Hamiltonella
          defensa 5AT (Acyrthosiphon pisum)]
          Length = 119

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 51/86 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ +  + GL++  ST  VT +F+ I ++  + E ++I  F TF V+ +  R+ 
Sbjct: 1  MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIEALGKKEPVQIIRFGTFKVRHRKERIS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +++K   R V VF A   LK
Sbjct: 61 RNPKTGEKIKTPAREVAVFSAGKSLK 86


>gi|120556663|ref|YP_961014.1| histone family protein DNA-binding protein [Marinobacter
          aquaeolei VT8]
 gi|120326512|gb|ABM20827.1| histone family protein DNA-binding protein [Marinobacter
          aquaeolei VT8]
          Length = 90

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 49/87 (56%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L  +I+ + GL+R+ +   +    +++  +A RGE + +  F TF+++ + +R GRN
Sbjct: 3  KPELAAAIADKTGLTREKAGEVINAFTDQVSAAAARGEDVTLIGFGTFNIRSREARNGRN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT   ++I   + V FKA   LK  I
Sbjct: 63 PQTGASIQIPASKTVGFKAGKALKDAI 89


>gi|242347958|ref|YP_002995519.1| DNA-binding protein HU-beta (NS1) (HU-1) [Aeromonas hydrophila]
 gi|224831777|gb|ACN66908.1| DNA-binding protein HU-beta (NS1) (HU-1) [Aeromonas hydrophila]
          Length = 90

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  ++++  +S+  +   V  L N + +    G  + ++ F TFHVK + +R G
Sbjct: 1  MNKSELIMKVAEDADISKAQAEAAVNALINSVTEELKSGGTVALTGFGTFHVKARAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I    +  FKA   LK  +
Sbjct: 61 RNPQTGENIQIAAANIPGFKAGKGLKDTV 89


>gi|160878293|ref|YP_001557261.1| histone family protein DNA-binding protein [Clostridium
          phytofermentans ISDg]
 gi|160426959|gb|ABX40522.1| histone family protein DNA-binding protein [Clostridium
          phytofermentans ISDg]
          Length = 91

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+++  LS+KDS + +    + + +   +GE +++  F TF V  + +R G
Sbjct: 1  MNKAELVAAIAEKTELSKKDSEKALKAFIDVVTEELTKGEKVQLVGFGTFEVSARPARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT Q + I   +   FKA   LK
Sbjct: 61 RNPQTKQTITIAASKAPKFKAGKALK 86


>gi|332971724|gb|EGK10672.1| DNA-binding protein HU [Desmospora sp. 8437]
          Length = 90

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ +++  G ++K+S   V  + + I ++   GE + +  F  F V+++ +R G
Sbjct: 1  MNKTELIERVAESTGKTKKESAHLVEAVLDSIAEALRNGEKVSLIGFGNFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I   +V  FK    LK+ +
Sbjct: 61 RNPQTGEPIEIGASKVPAFKPGKQLKEAV 89


>gi|90962747|ref|YP_536662.1| DNA-binding protein HU [Lactobacillus salivarius UCC118]
 gi|90821941|gb|ABE00579.1| DNA-binding protein HU [Lactobacillus salivarius UCC118]
          Length = 91

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 53/86 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV++I+++ G ++K++   V+     + ++ V G+ ++I  F  F V+++ +R G
Sbjct: 1  MNKNELVEAIAEKMGATKKEAEAAVSAFTETVKEALVDGKKVQIIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I   +V  FK    LK
Sbjct: 61 RNPQTGKEIEIPASKVPAFKPGKGLK 86


>gi|320537407|ref|ZP_08037357.1| putative integration host factor subunit alpha [Treponema
          phagedenis F0421]
 gi|320145733|gb|EFW37399.1| putative integration host factor subunit alpha [Treponema
          phagedenis F0421]
          Length = 103

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          TR+ L   I ++FG   + +   V +L  E+  +  RGE I++ +F  F ++ + S +GR
Sbjct: 7  TRASLTDLIYRKFGYDYRITATIVDSLIEEMASALKRGETIELRNFGVFELQHRKSSIGR 66

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N+     VKI  R VV F+    L++ + D
Sbjct: 67 NISAGTAVKIPERYVVAFRPGKNLREAVKD 96


>gi|114799692|ref|YP_759440.1| DNA-binding protein HU [Hyphomonas neptunium ATCC 15444]
 gi|114739866|gb|ABI77991.1| DNA-binding protein HU [Hyphomonas neptunium ATCC 15444]
          Length = 88

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L K+++   GLS+ D+ + V  LF  +  +A   + + I+ F TF  K + +R G
Sbjct: 1  MNKGELTKAVAAASGLSQSDAGKAVDALFETVAAAAKSRQQVAIAGFGTFSAKTRNAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN  T + +KI  +  + FK +S LK
Sbjct: 61 RNPATKETIKIPEKTSLAFKPASALK 86


>gi|171057653|ref|YP_001790002.1| integration host factor subunit beta [Leptothrix cholodnii SP-6]
 gi|170775098|gb|ACB33237.1| integration host factor, beta subunit [Leptothrix cholodnii SP-6]
          Length = 112

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDLV  +++ F  L+ +D+   V T+ + + D+  RG  I+I  F +F + ++  RV
Sbjct: 1  MTRSDLVALLAERFSQLTHRDAEFAVKTMLDAMSDALARGHRIEIRGFGSFAINRRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V I  + V  FK    L++ +
Sbjct: 61 GRNPRSGEQVVIPEKLVPHFKPGKALREAV 90


>gi|254362042|ref|ZP_04978168.1| integration host factor alpha subunit [Mannheimia haemolytica
          PHL213]
 gi|261495203|ref|ZP_05991665.1| integration host factor alpha subunit [Mannheimia haemolytica
          serotype A2 str. OVINE]
 gi|153093596|gb|EDN74564.1| integration host factor alpha subunit [Mannheimia haemolytica
          PHL213]
 gi|261309128|gb|EEY10369.1| integration host factor alpha subunit [Mannheimia haemolytica
          serotype A2 str. OVINE]
          Length = 98

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 58/90 (64%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+ ++ +++ ++FGL ++ + +FV   F EI  S   GE +K+S F  F +++K +R 
Sbjct: 2  ALTKIEIAENLIEKFGLEKRVAKQFVELFFEEIRSSLENGEEVKLSGFGNFSLREKKARP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  RRVVVFKA   L++R+
Sbjct: 62 GRNPKTGENVAVSARRVVVFKAGQKLRERV 91


>gi|62296616|sp|P19436|DBH_THET8 RecName: Full=DNA-binding protein HU; AltName: Full=DNA-binding
          protein II; AltName: Full=TL29
          Length = 96

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 51/91 (56%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+T++DLV  +++  GL +KD    V  L  ++ ++   G  ++++ F TF V+++ +R
Sbjct: 4  KTVTKADLVDQVAQATGLKKKDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           G    T +++KI   +   FK    LK ++
Sbjct: 64 TGVKPGTKEKIKIPATQYPAFKPGKALKDKV 94


>gi|238855192|ref|ZP_04645511.1| DNA-binding protein HU [Lactobacillus jensenii 269-3]
 gi|260664555|ref|ZP_05865407.1| integration host factor, beta subunit [Lactobacillus jensenii
          SJ-7A-US]
 gi|282932514|ref|ZP_06337939.1| DNA-binding protein HU [Lactobacillus jensenii 208-1]
 gi|313471979|ref|ZP_07812471.1| DNA-binding protein HU [Lactobacillus jensenii 1153]
 gi|238832084|gb|EEQ24402.1| DNA-binding protein HU [Lactobacillus jensenii 269-3]
 gi|239529089|gb|EEQ68090.1| DNA-binding protein HU [Lactobacillus jensenii 1153]
 gi|260561620|gb|EEX27592.1| integration host factor, beta subunit [Lactobacillus jensenii
          SJ-7A-US]
 gi|281303463|gb|EFA95640.1| DNA-binding protein HU [Lactobacillus jensenii 208-1]
          Length = 91

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV  ++ +  L++KD    V  +F  I +   +GE +++  F TF V+ + +R GRN
Sbjct: 4  KAELVAEVAAKTKLTKKDVAAAVDAIFASIQEDLAKGEKVQLIGFGTFEVRNRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT  E++I   +V  FK    LK
Sbjct: 64 PQTGVEIEIPASKVPAFKPGKALK 87


>gi|238897499|ref|YP_002923178.1| HU, DNA-binding transcriptional regulator, alpha subunit-1
          [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
          pisum)]
 gi|229465256|gb|ACQ67030.1| HU, DNA-binding transcriptional regulator, alpha subunit-1
          [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
          pisum)]
          Length = 113

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 51/86 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ +  + GL++  ST  VT +F+ I ++  + E ++I  F TF V+ +  R+ 
Sbjct: 1  MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIEALGKKEPVQIIRFGTFKVRHRKERIS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +++K   R V VF A   LK
Sbjct: 61 RNPKTGEKIKTPAREVAVFSAGKSLK 86


>gi|39933146|ref|NP_945422.1| integration host factor subunit beta [Rhodopseudomonas palustris
          CGA009]
 gi|192288502|ref|YP_001989107.1| integration host factor subunit beta [Rhodopseudomonas palustris
          TIE-1]
 gi|81698457|sp|Q6NDN9|IHFB_RHOPA RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709804|sp|B3Q602|IHFB_RHOPT RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|39652771|emb|CAE25510.1| integration host factor beta chain [Rhodopseudomonas palustris
          CGA009]
 gi|192282251|gb|ACE98631.1| integration host factor, beta subunit [Rhodopseudomonas palustris
          TIE-1]
          Length = 104

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  + +EI D+  RG+ +++  F  F VK + +R 
Sbjct: 1  MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T   V +D + V  FK    +++R+  D
Sbjct: 61 GRNPRTGAHVPVDQKTVPFFKTGKEMRERLNRD 93


>gi|312898729|ref|ZP_07758118.1| putative integration host factor, beta subunit [Megasphaera
          micronuciformis F0359]
 gi|310620160|gb|EFQ03731.1| putative integration host factor, beta subunit [Megasphaera
          micronuciformis F0359]
          Length = 92

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 53/86 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  L++KD+ + V  +F  + ++  +G+ ++I  F TF V+ + +R G
Sbjct: 1  MNKTELIASVAQKSDLTKKDAEKAVKAVFEAVSETLKKGDKVQIIGFGTFEVRARKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN + N+ +KI   +   FKA   LK
Sbjct: 61 RNPRNNEVIKIPASKTPAFKAGKQLK 86


>gi|32034579|ref|ZP_00134735.1| COG0776: Bacterial nucleoid DNA-binding protein [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
 gi|126207602|ref|YP_001052827.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae L20]
 gi|165975570|ref|YP_001651163.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 3
          str. JL03]
 gi|190149383|ref|YP_001967908.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 7
          str. AP76]
 gi|303249818|ref|ZP_07336022.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 6
          str. Femo]
 gi|303251938|ref|ZP_07338109.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 2
          str. 4226]
 gi|307244922|ref|ZP_07527019.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 1
          str. 4074]
 gi|307247097|ref|ZP_07529149.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 2
          str. S1536]
 gi|307249318|ref|ZP_07531312.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 4
          str. M62]
 gi|307251641|ref|ZP_07533546.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 6
          str. Femo]
 gi|307253876|ref|ZP_07535728.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 9
          str. CVJ13261]
 gi|307256139|ref|ZP_07537926.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
          10 str. D13039]
 gi|307258330|ref|ZP_07540071.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
          11 str. 56153]
 gi|307260571|ref|ZP_07542263.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
          12 str. 1096]
 gi|307262701|ref|ZP_07544329.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
          13 str. N273]
 gi|126096394|gb|ABN73222.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
          5b str. L20]
 gi|165875671|gb|ABY68719.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 3
          str. JL03]
 gi|189914514|gb|ACE60766.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 7
          str. AP76]
 gi|302649368|gb|EFL79553.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 2
          str. 4226]
 gi|302651385|gb|EFL81537.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 6
          str. Femo]
 gi|306854087|gb|EFM86295.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 1
          str. 4074]
 gi|306856346|gb|EFM88497.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 2
          str. S1536]
 gi|306858612|gb|EFM90674.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 4
          str. M62]
 gi|306860838|gb|EFM92846.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 6
          str. Femo]
 gi|306863080|gb|EFM95022.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 9
          str. CVJ13261]
 gi|306865320|gb|EFM97216.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
          10 str. D13039]
 gi|306867514|gb|EFM99361.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
          11 str. 56153]
 gi|306869648|gb|EFN01433.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
          12 str. 1096]
 gi|306871956|gb|EFN03672.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
          13 str. N273]
          Length = 90

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+    LS+KD+   +    N I +S   G+ +++  F TF V ++ +R G
Sbjct: 1  MNKTELIDAIAAGAELSKKDAKAALEATLNAISESLKNGDTVQLIGFGTFKVNERNARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E+KI   +V  F A   LK
Sbjct: 61 RNPRTGEEIKIAASKVPAFVAGKALK 86


>gi|325678265|ref|ZP_08157893.1| DNA-binding protein HU-beta [Ruminococcus albus 8]
 gi|324110028|gb|EGC04216.1| DNA-binding protein HU-beta [Ruminococcus albus 8]
          Length = 92

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+++ G S+K++ + +  + + I D+  +GE + +  F TF V+ + ++V 
Sbjct: 1  MNKAELINVIAEKGGYSKKEADKALAAVLDSITDALEKGEKVTLVGFGTFEVRDRAAKVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T   V +  R+V  FKA S LK  +
Sbjct: 61 MNPVTKAPVDVPARKVPAFKAGSALKAAV 89


>gi|127513433|ref|YP_001094630.1| histone family protein DNA-binding protein [Shewanella loihica
          PV-4]
 gi|126638728|gb|ABO24371.1| histone family protein DNA-binding protein [Shewanella loihica
          PV-4]
          Length = 90

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + +  + + D    G+ I +  F TF V+Q+  R G
Sbjct: 1  MNKSELIEKIASGADISKAAAGRALDSFISAVTDGLKDGDKISLVGFGTFEVRQRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    +  FKA   LK  +
Sbjct: 61 RNPQTGKEIKIAAANIPAFKAGKALKDAV 89


>gi|313679460|ref|YP_004057199.1| bacterial nucleoid protein hbs [Oceanithermus profundus DSM
          14977]
 gi|313152175|gb|ADR36026.1| bacterial nucleoid protein Hbs [Oceanithermus profundus DSM
          14977]
          Length = 98

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 52/91 (57%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+T+SDLV  +++  GL +KD+   + T  +EI     R   ++++ F TF V+++ +R
Sbjct: 6  KTVTKSDLVNHVAEITGLKKKDAKACIDTFLDEIATFLDRDYKVQLTGFGTFEVRKRKAR 65

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           G    T +++KI   +   FK    LK+++
Sbjct: 66 TGVKPGTTEKIKIPASKYPAFKPGKALKEKV 96


>gi|227892106|ref|ZP_04009911.1| DNA-binding protein HU [Lactobacillus salivarius ATCC 11741]
 gi|301300365|ref|ZP_07206569.1| DNA-binding protein HU [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|227866089|gb|EEJ73510.1| DNA-binding protein HU [Lactobacillus salivarius ATCC 11741]
 gi|300852049|gb|EFK79729.1| DNA-binding protein HU [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 91

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 53/86 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV++I+++ G ++K++   V+     + ++ V G+ ++I  F  F V+++ +R G
Sbjct: 1  MNKNELVEAIAEKMGTTKKEAEAAVSAFTETVKEALVDGKKVQIIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I   +V  FK    LK
Sbjct: 61 RNPQTGKEIEIPASKVPAFKPGKGLK 86


>gi|134288835|ref|YP_001111235.1| gp35 [Burkholderia phage phiE255]
 gi|134132171|gb|ABO60692.1| gp35 [Burkholderia phage phiE255]
          Length = 90

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+  ++ E GL++ DS   +  +   I  S  +G+ + ++ F  F V  + +R G
Sbjct: 1  MNKSDLINHVAAETGLTKADSGFALEAVLEGITKSLRKGDTVTLTGFGVFSVGARAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T +E+KI   +   FKA   LK  +
Sbjct: 61 RNPATGEEIKIPASKAPKFKAGKGLKDAV 89


>gi|329117127|ref|ZP_08245844.1| DNA-binding protein HU-beta [Streptococcus parauberis NCFD 2020]
 gi|326907532|gb|EGE54446.1| DNA-binding protein HU-beta [Streptococcus parauberis NCFD 2020]
          Length = 91

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F+ I      GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVDAVFSAIEAFLSEGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT  E++I   +V  FKA   LK
Sbjct: 64 PQTGAEIEIAASKVPAFKAGKALK 87


>gi|291521609|emb|CBK79902.1| Bacterial nucleoid DNA-binding protein [Coprococcus catus GD/7]
          Length = 91

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ G+ + D+ + +    + + D  V+GE I++  F TF V ++  R G
Sbjct: 1  MNKAELVAAMAEKTGMKKNDAEKALKAFVDVVTDELVKGEKIQLVGFGTFEVSERPEREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + +KI   +   FKA   LK  I
Sbjct: 61 RNPRTGETMKIAASKAPKFKAGKALKDMI 89


>gi|190015583|ref|YP_001967304.1| DNA-binding protein HU [Bacillus cereus]
 gi|208702183|ref|YP_002267334.1| DNA-binding protein HU 1 [Bacillus cereus H3081.97]
 gi|217956824|ref|YP_002335918.1| DNA-binding protein HU 1 [Bacillus cereus AH187]
 gi|229142798|ref|ZP_04271251.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26]
 gi|116584490|gb|ABK00607.1| DNA-binding protein HU [Bacillus cereus]
 gi|208658038|gb|ACI30408.1| DNA-binding protein HU 1 [Bacillus cereus H3081.97]
 gi|217068469|gb|ACJ82717.1| DNA-binding protein HU 1 [Bacillus cereus AH187]
 gi|228640666|gb|EEK97044.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26]
          Length = 90

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL K I+++  L++KD+      + + I  +    E ++I  F TF V+++ +R G
Sbjct: 1  MNKTDLTKVIAEKAELTQKDAAAATQAVLDTITTALANEEKVQILGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I   +   FKA   LK
Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELK 86


>gi|254437270|ref|ZP_05050764.1| integration host factor, beta subunit [Octadecabacter antarcticus
          307]
 gi|198252716|gb|EDY77030.1| integration host factor, beta subunit [Octadecabacter antarcticus
          307]
          Length = 93

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L  +I+++   L ++D  R V T+F  + ++   G+ +++  F  F VK++ +R+
Sbjct: 1  MIRSELTDTIAEQNPHLYQRDVERIVNTIFERVIEAMSNGDRVELRGFGAFSVKKRDARL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V+++ + V  FK   +L+ R+
Sbjct: 61 GRNPRTGEAVQVEEKHVPFFKTGKLLRDRL 90


>gi|325142000|gb|EGC64435.1| integration host factor subunit alpha [Neisseria meningitidis
          961-5945]
          Length = 72

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 34/59 (57%)

Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
           F EI  +   GE IKIS F  F ++ K  R GRN +T +EV I  RRVV F AS  LK
Sbjct: 3  FFEEIRSTLASGEEIKISGFGNFQLRDKPQRPGRNPKTGEEVPITARRVVTFHASQKLK 61


>gi|77919056|ref|YP_356871.1| BHL, histone-like protein [Pelobacter carbinolicus DSM 2380]
 gi|77545139|gb|ABA88701.1| BHL, histone-like protein [Pelobacter carbinolicus DSM 2380]
          Length = 92

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++++ GL+ K +   V  + + + D+ V G  I+I  F +  VK   + +G
Sbjct: 1  MNKSELIDALAEKKGLTYKRAEEIVNIVLDTMSDTLVEGGRIEIRGFGSLVVKDYKAYIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E+++ P+++  FK    L++RI
Sbjct: 61 RNPKTGEEIEVKPKKLPFFKVGKELRERI 89


>gi|229077218|ref|ZP_04209912.1| DNA-binding protein HU [Bacillus cereus Rock4-18]
 gi|229119652|ref|ZP_04248924.1| DNA-binding protein HU [Bacillus cereus Rock1-3]
 gi|228663818|gb|EEL19387.1| DNA-binding protein HU [Bacillus cereus Rock1-3]
 gi|228706049|gb|EEL58344.1| DNA-binding protein HU [Bacillus cereus Rock4-18]
          Length = 93

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K ++ +  L++KD+      + + I ++    E ++I  F TF V+++ +R G
Sbjct: 4  MNKTELIKVVADKAELTQKDAATATQAVLDAITNTLANEEKVQILGFGTFEVRERSARTG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +   FKA   LK+ +
Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKELKEAV 92


>gi|326795822|ref|YP_004313642.1| histone family protein DNA-binding protein [Marinomonas
          mediterranea MMB-1]
 gi|326546586|gb|ADZ91806.1| histone family protein DNA-binding protein [Marinomonas
          mediterranea MMB-1]
          Length = 90

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    LS+  ++  +      I ++ V+G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAASADLSKAAASNALDATLKTIEEALVKGDQVTLVGFGTFQVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I   +V  FKA   LK  +
Sbjct: 61 RNPQTGAEIQIKAAKVPSFKAGKGLKDAV 89


>gi|294141765|ref|YP_003557743.1| HU family DNA-binding protein [Shewanella violacea DSS12]
 gi|293328234|dbj|BAJ02965.1| DNA-binding protein, HU family [Shewanella violacea DSS12]
          Length = 90

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + +    + D    G+ I +  F TF V+Q+  R G
Sbjct: 1  MNKSELIEKIASGADISKAAAGRALDSFIGAVTDGLKDGDKISLVGFGTFEVRQRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E+KI    +  FKA   LK  +
Sbjct: 61 RNPQTGAEIKIAAANIPAFKAGKALKDAV 89


>gi|91974676|ref|YP_567335.1| integration host factor subunit beta [Rhodopseudomonas palustris
          BisB5]
 gi|123722247|sp|Q13EQ5|IHFB_RHOPS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|91681132|gb|ABE37434.1| integration host factor, beta subunit [Rhodopseudomonas palustris
          BisB5]
          Length = 101

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  + +EI D+  RG+ +++  F  F VK + +R 
Sbjct: 1  MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +D + V  FK    +++R+
Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERL 90


>gi|226946415|ref|YP_002801488.1| histone-like DNA-binding protein [Azotobacter vinelandii DJ]
 gi|226721342|gb|ACO80513.1| histone-like bacterial DNA-binding protein, hupB family
          [Azotobacter vinelandii DJ]
          Length = 90

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ S+S    L +  +T+ V  L   I      G  + +  F TF VK++ +R G
Sbjct: 1  MNKSELIASVSTHADLDKNTATKVVNALLETITAELKAGHEVGLIGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +   FKA   LK+ +
Sbjct: 61 RNPQTGKEIEIAAAKTPGFKAGKGLKEAV 89


>gi|117921099|ref|YP_870291.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3]
 gi|117613431|gb|ABK48885.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3]
          Length = 90

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + +    + +    G+ I +  F TF V+++  R G
Sbjct: 1  MNKSELIEKIASGADISKAAAGRALDSFIAAVTEGLKEGDKISLVGFGTFEVRERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT QE+KI   ++  FKA   LK
Sbjct: 61 RNPQTGQEIKIAAAKIPAFKAGKALK 86


>gi|323487339|ref|ZP_08092639.1| hypothetical protein HMPREF9474_04390 [Clostridium symbiosum
          WAL-14163]
 gi|323694222|ref|ZP_08108398.1| DNA-binding protein HU [Clostridium symbiosum WAL-14673]
 gi|323399384|gb|EGA91782.1| hypothetical protein HMPREF9474_04390 [Clostridium symbiosum
          WAL-14163]
 gi|323501695|gb|EGB17581.1| DNA-binding protein HU [Clostridium symbiosum WAL-14673]
          Length = 91

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 51/86 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  LS+KD+ + +    + + D  V+GE I++  F TF V ++ +R G
Sbjct: 1  MNKTELIAAVAEKAELSKKDAEKAIKAFTDVVSDELVKGEKIQLVGFGTFEVAERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + + I   +   FKA   LK
Sbjct: 61 RNPKTGETMPIAASKTPKFKAGKALK 86


>gi|262372261|ref|ZP_06065540.1| integration host factor, beta subunit [Acinetobacter junii SH205]
 gi|262312286|gb|EEY93371.1| integration host factor, beta subunit [Acinetobacter junii SH205]
          Length = 90

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+++ G+S+ D+ + +      I ++  +G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAEKGGVSKSDAGKALDATIASITEALKKGDTVTLVGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E++I   +V  FK    LK  +
Sbjct: 61 RNPKTGEELQIKASKVPSFKPGKGLKDSV 89


>gi|330994450|ref|ZP_08318375.1| Integration host factor subunit beta [Gluconacetobacter sp.
          SXCC-1]
 gi|329758450|gb|EGG74969.1| Integration host factor subunit beta [Gluconacetobacter sp.
          SXCC-1]
          Length = 105

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRS+L+  ++     L  ++  R V  +F E+ ++ +RG+ +++  F  F VK++ +R 
Sbjct: 8  MTRSELIAELAAARPHLPVREVERIVQVIFAEVSNALMRGDRVELRGFGAFTVKKRDART 67

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +D + V  FKA   L++R+
Sbjct: 68 GRNPRTGETVSVDEKVVPFFKAGKELRERV 97


>gi|209964552|ref|YP_002297467.1| DNA-binding protein HupA [Rhodospirillum centenum SW]
 gi|209958018|gb|ACI98654.1| DNA-binding protein HupA [Rhodospirillum centenum SW]
          Length = 90

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 51/86 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV ++++  GLS+ D+ + V  +F+ I  +  +G+ +++  F TF V ++ +  G
Sbjct: 1  MNKNDLVAAVAEAAGLSKADANKAVDAVFDGITSALTKGDEVRLVGFGTFGVAERAASEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +++ I   +   FKA   LK
Sbjct: 61 RNPRTGEKISIPASKQPKFKAGKGLK 86


>gi|86747764|ref|YP_484260.1| integration host factor subunit beta [Rhodopseudomonas palustris
          HaA2]
 gi|123004672|sp|Q2J2G1|IHFB_RHOP2 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|86570792|gb|ABD05349.1| integration host factor, beta subunit [Rhodopseudomonas palustris
          HaA2]
          Length = 101

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  + +EI D+  RG+ +++  F  F VK + +R 
Sbjct: 1  MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +D + V  FK    +++R+
Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERL 90


>gi|194337655|ref|YP_002019449.1| histone family protein DNA-binding protein [Pelodictyon
          phaeoclathratiforme BU-1]
 gi|194310132|gb|ACF44832.1| histone family protein DNA-binding protein [Pelodictyon
          phaeoclathratiforme BU-1]
          Length = 91

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++++LV+ I+ +  L++ D+ R V    N + DS   G+ + +  F TF V ++  R+G
Sbjct: 1  MSKAELVEKIADQAKLTKVDAERAVNAFINVVIDSLKDGDDVTLVGFGTFAVGKRAERLG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I  + VV FK    L+  I
Sbjct: 61 RNPQTGEAITIAAKNVVKFKPGKALRDGI 89


>gi|262376135|ref|ZP_06069365.1| integration host factor, beta subunit [Acinetobacter lwoffii
          SH145]
 gi|262308736|gb|EEY89869.1| integration host factor, beta subunit [Acinetobacter lwoffii
          SH145]
          Length = 90

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+++ GLS+ D+ + +      + ++   G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAEKGGLSKADAGKALDATIASVTEALKSGDTVTLVGFGTFGVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I   +V  FKA   LK  +
Sbjct: 61 RNPQTGATLEIKASKVPSFKAGKGLKDAV 89


>gi|238026976|ref|YP_002911207.1| putative dna-binding protein hu-beta [Burkholderia glumae BGR1]
 gi|237876170|gb|ACR28503.1| Probable dna-binding protein hu-beta [Burkholderia glumae BGR1]
          Length = 90

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  I++E  LS+  + R +  L   +  +   G ++ ++ F TF V ++ +R G
Sbjct: 1  MNKTDLIDHIAREADLSKASAGRALDALIGGVMQALESGGSVTLAGFGTFEVGERIARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + ++I+  RV  F+A   LK
Sbjct: 61 RNPQTGETIRIEAARVAKFRAGKALK 86


>gi|302669370|ref|YP_003832520.1| DNA-binding protein [Butyrivibrio proteoclasticus B316]
 gi|302397034|gb|ADL35938.1| DNA-binding protein [Butyrivibrio proteoclasticus B316]
          Length = 94

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 4/97 (4%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++LV +I+KE GLS+KDS + V      +     +   +++  F TF   ++ +R G
Sbjct: 1   MNKTELVDAIAKETGLSKKDSEKAVKAFTEAVSKELKKKGKVQLVGFGTFETAKRAARTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           +N QT   +KI    V  FKA   LK    D + G+K
Sbjct: 61  KNPQTGAAIKIPAATVPKFKAGKALK----DAVNGKK 93


>gi|42522297|ref|NP_967677.1| DNA-binding protein HU [Bdellovibrio bacteriovorus HD100]
 gi|39574828|emb|CAE78670.1| DNA-binding protein HU [Bdellovibrio bacteriovorus HD100]
          Length = 97

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 55/89 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DL+  IS++ G++R  +   V T+F+ + ++ +R + I+I  F +F  +Q G+  G
Sbjct: 1  MTKADLINLISEKAGITRVKAETVVNTIFDSMVEALMRDDRIEIRGFGSFVNRQYGAYKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + +D +++  FK    LK+ I
Sbjct: 61 RNPRTGEIINVDEKKLPFFKVGKELKEDI 89


>gi|255009412|ref|ZP_05281538.1| putative histone-like DNA-binding protein HU2 [Bacteroides
          fragilis 3_1_12]
 gi|313147171|ref|ZP_07809364.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
 gi|313135938|gb|EFR53298.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
          Length = 96

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          +    +S+  G + KD++  +TTL ++I      G AI I  F  F VK+K  R+  N  
Sbjct: 5  EFTSELSRRLGYNTKDTSDLITTLLSDIIQELQEGNAIGIQGFGAFEVKKKAERIVINPV 64

Query: 69 TNQEVKIDPRRVVVFKASSILKKR 92
          T   + + P+ V+ FK S ILK +
Sbjct: 65 TRLRLLVPPKLVLAFKPSPILKDK 88


>gi|307546664|ref|YP_003899143.1| DNA-binding protein HU-beta [Halomonas elongata DSM 2581]
 gi|307218688|emb|CBV43958.1| K03530 DNA-binding protein HU-beta [Halomonas elongata DSM 2581]
          Length = 91

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LVK I+    LS+  + R +T   + +  +  +G+ + +  F TF  +++ +R G
Sbjct: 1  MNKSELVKQIATTAELSQAQAERCLTAFTDSVAKTLSQGDKLTLLGFGTFETRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  FKA   LK  +
Sbjct: 61 RNPQTGEEMTIPAAKVPAFKAGQGLKDAV 89


>gi|297624967|ref|YP_003706401.1| histone family protein DNA-binding protein [Truepera radiovictrix
          DSM 17093]
 gi|297166147|gb|ADI15858.1| histone family protein DNA-binding protein [Truepera radiovictrix
          DSM 17093]
          Length = 99

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 54/92 (58%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +KT++++DLV  ++++ G+ +KD    V T+ +++      G+ ++++ F TF V+++ +
Sbjct: 4  AKTVSKADLVDKVAEDTGMRKKDVKTIVDTMIDQVSQHLNNGDKVQLTGFGTFEVRERRA 63

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R G    T + ++I   +   FK    LK++I
Sbjct: 64 RTGVKPGTTERIEIPASKYPAFKPGKALKEKI 95


>gi|225571163|ref|ZP_03780161.1| hypothetical protein CLOHYLEM_07251 [Clostridium hylemonae DSM
          15053]
 gi|225159994|gb|EEG72613.1| hypothetical protein CLOHYLEM_07251 [Clostridium hylemonae DSM
          15053]
          Length = 91

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+++  LS+KDS + +    + I     +GE I++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAIAEQAELSKKDSEKALKAFVDVITAELKKGEKIQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + +KI   +   FKA   LK
Sbjct: 61 RNPQTGKTMKIAACKAPKFKAGKALK 86


>gi|332527560|ref|ZP_08403607.1| putative integration host factor subunit beta (ihf-beta) protein
          [Rubrivivax benzoatilyticus JA2]
 gi|332111963|gb|EGJ11940.1| putative integration host factor subunit beta (ihf-beta) protein
          [Rubrivivax benzoatilyticus JA2]
          Length = 103

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDLV  +++ F  L+++D+   V T+ + + D+  RG  I+I  F +F + ++  R+
Sbjct: 1  MTRSDLVARLAERFSQLTQRDTEFAVKTILDAMTDALARGHRIEIRGFGSFSINRRPPRM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V I  + V  FK    L++ +
Sbjct: 61 GRNPRSGEQVVIPEKLVPHFKPGKALREAV 90


>gi|308271747|emb|CBX28355.1| Integration host factor subunit beta [uncultured Desulfobacterium
          sp.]
          Length = 92

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +I  +  +S+ ++ R V   F+ + D+   G+ I+I    +F+VK   S  G
Sbjct: 1  MNKLELISAIKDKANISKAEAARVVQIFFDSMTDAMANGDRIEIRGLCSFYVKNYKSYAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T ++V I P+++  FK+   LK+R+
Sbjct: 61 RNPKTGKKVVIKPKKLPFFKSGKELKERV 89


>gi|308049131|ref|YP_003912697.1| histone family protein DNA-binding protein [Ferrimonas balearica
          DSM 9799]
 gi|307631321|gb|ADN75623.1| histone family protein DNA-binding protein [Ferrimonas balearica
          DSM 9799]
          Length = 93

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R  L+K +++   +S+ +  R +  L N I  +   GE + +     F V+    R G
Sbjct: 1  MNRQQLIKRMAELSEMSQAECKRVLAALENTIAQALHEGETVYLPPLGVFEVRHHLPRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN QT + ++I  R V  FKA++ LKK + + 
Sbjct: 61 RNPQTGETIEIPLRTVPAFKAAAPLKKAVAEQ 92


>gi|304320496|ref|YP_003854139.1| integration host factor beta chain [Parvularcula bermudensis
           HTCC2503]
 gi|303299398|gb|ADM08997.1| integration host factor beta chain [Parvularcula bermudensis
           HTCC2503]
          Length = 113

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 59/107 (55%), Gaps = 9/107 (8%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV+ ++ E   L  KD  + V+ +F+ I  +  +G+ +++  F TF VK + +R 
Sbjct: 1   MIKSELVQQLAAENPHLFMKDVEKLVSAIFDHISTALEQGDRVELRGFGTFSVKYREART 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSP 110
           GRN +T + V+++ + V  FKA          +MR R   K D+ +P
Sbjct: 61  GRNPRTGESVEVEEKWVPFFKAGK--------EMRERLNKKTDLVAP 99


>gi|259500655|ref|ZP_05743557.1| DNA-binding protein HU [Lactobacillus iners DSM 13335]
 gi|302191344|ref|ZP_07267598.1| DNA-binding protein HU [Lactobacillus iners AB-1]
 gi|309804184|ref|ZP_07698262.1| DNA-binding protein HU [Lactobacillus iners LactinV 11V1-d]
 gi|309805716|ref|ZP_07699756.1| DNA-binding protein HU [Lactobacillus iners LactinV 09V1-c]
 gi|309806743|ref|ZP_07700737.1| DNA-binding protein HU [Lactobacillus iners LactinV 03V1-b]
 gi|309809245|ref|ZP_07703114.1| DNA-binding protein HU [Lactobacillus iners SPIN 2503V10-D]
 gi|312871445|ref|ZP_07731540.1| DNA-binding protein HU [Lactobacillus iners LEAF 3008A-a]
 gi|312872380|ref|ZP_07732450.1| DNA-binding protein HU [Lactobacillus iners LEAF 2062A-h1]
 gi|312873981|ref|ZP_07734017.1| DNA-binding protein HU [Lactobacillus iners LEAF 2052A-d]
 gi|312875460|ref|ZP_07735463.1| DNA-binding protein HU [Lactobacillus iners LEAF 2053A-b]
 gi|315653510|ref|ZP_07906431.1| DNA-binding protein HU [Lactobacillus iners ATCC 55195]
 gi|325912002|ref|ZP_08174404.1| DNA-binding protein HU [Lactobacillus iners UPII 143-D]
 gi|325912845|ref|ZP_08175223.1| DNA-binding protein HU [Lactobacillus iners UPII 60-B]
 gi|329921293|ref|ZP_08277731.1| DNA-binding protein HU [Lactobacillus iners SPIN 1401G]
 gi|259168039|gb|EEW52534.1| DNA-binding protein HU [Lactobacillus iners DSM 13335]
 gi|308163767|gb|EFO66036.1| DNA-binding protein HU [Lactobacillus iners LactinV 11V1-d]
 gi|308164969|gb|EFO67212.1| DNA-binding protein HU [Lactobacillus iners LactinV 09V1-c]
 gi|308166858|gb|EFO69043.1| DNA-binding protein HU [Lactobacillus iners LactinV 03V1-b]
 gi|308170358|gb|EFO72382.1| DNA-binding protein HU [Lactobacillus iners SPIN 2503V10-D]
 gi|311088971|gb|EFQ47412.1| DNA-binding protein HU [Lactobacillus iners LEAF 2053A-b]
 gi|311090530|gb|EFQ48938.1| DNA-binding protein HU [Lactobacillus iners LEAF 2052A-d]
 gi|311092203|gb|EFQ50577.1| DNA-binding protein HU [Lactobacillus iners LEAF 2062A-h1]
 gi|311093098|gb|EFQ51447.1| DNA-binding protein HU [Lactobacillus iners LEAF 3008A-a]
 gi|315489201|gb|EFU78842.1| DNA-binding protein HU [Lactobacillus iners ATCC 55195]
 gi|325476187|gb|EGC79351.1| DNA-binding protein HU [Lactobacillus iners UPII 143-D]
 gi|325477838|gb|EGC80972.1| DNA-binding protein HU [Lactobacillus iners UPII 60-B]
 gi|328934585|gb|EGG31089.1| DNA-binding protein HU [Lactobacillus iners SPIN 1401G]
          Length = 91

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 51/87 (58%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          ++DLV  ++    LS+K++   V  +FN + ++  + E +++  F TF V+++ +R GRN
Sbjct: 4  KADLVSLVASNTKLSKKEAADAVDLVFNFVKETLSKDEKVQLIGFGTFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT  E++I   +V  FK    LK+ +
Sbjct: 64 PQTGAEIEIPASKVPAFKPGKALKEAV 90


>gi|317968906|ref|ZP_07970296.1| DNA-binding protein HU [Synechococcus sp. CB0205]
          Length = 91

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ D  + V    + I DS V G+ + I  F +F  +++ +R G
Sbjct: 1  MNKADLVNLVAARTELTKTDVAQVVDAAIDTIIDSVVEGKKVSILGFGSFEPRERSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T Q++KI  +RV  F A  + K R+
Sbjct: 61 LNPKTGQKIKIPAKRVPAFTAGKLFKDRV 89


>gi|270160386|ref|ZP_06189035.1| DNA-binding protein HU-beta [Legionella longbeachae D-4968]
 gi|308051556|ref|YP_003915130.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Legionella longbeachae NSW150]
 gi|269987096|gb|EEZ93358.1| DNA-binding protein HU-beta [Legionella longbeachae D-4968]
 gi|288859981|emb|CBJ13969.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Legionella longbeachae NSW150]
          Length = 92

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +IS   GLS+ DS   +  + + + +   +G++I +  FA+  VK+  +R G
Sbjct: 1  MNKKELIAAISNTSGLSKTDSETALNAVISCLTELLAKGDSIVLPGFASLSVKEHPARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T Q ++I   +VV FK  + LK+ I
Sbjct: 61 RNPSTGQPIEIAASKVVSFKTGTKLKEAI 89


>gi|332971083|gb|EGK10053.1| DNA-binding protein HU [Desmospora sp. 8437]
          Length = 90

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+++ G+++KD    V     E+  +   GE +++  F TF  +++  R G
Sbjct: 1  MNKNDLIHNIAQKSGMTKKDVETVVNGFLEEVTHALGSGEKVQLIGFGTFETRKRSGRSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I    V  FKA + LK+ +
Sbjct: 61 RNPQTGAVIEIPESTVPAFKAGTRLKEAV 89


>gi|294084820|ref|YP_003551580.1| integration host factor subunit beta [Candidatus Puniceispirillum
          marinum IMCC1322]
 gi|292664395|gb|ADE39496.1| integration host factor, beta subunit [Candidatus
          Puniceispirillum marinum IMCC1322]
          Length = 92

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRS+L+  ++ K   L  +D  R V T+ +EI  +  RG+ +++  F  F V+ + +R+
Sbjct: 1  MTRSELIARMAAKNPALYHRDIERLVGTILDEISGALERGDRVELRGFGAFSVRHRKARI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V++  ++V  FK    +++R+
Sbjct: 61 GRNPRTGTSVQVAEKKVPFFKMGKGMRERL 90


>gi|237834245|ref|XP_002366420.1| DNA-binding protein HU, putative [Toxoplasma gondii ME49]
 gi|211964084|gb|EEA99279.1| DNA-binding protein HU, putative [Toxoplasma gondii ME49]
          Length = 235

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 55/103 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +TR DLV S++ E  + R +  + V+     I  S  +G+ + +S F +  ++++G RV 
Sbjct: 121 VTRKDLVASVAAELQVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGERVA 180

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           RN +T +++ +       F  S +LK ++ + +   + +++D 
Sbjct: 181 RNPRTGEQLTVPATTFPTFSFSKVLKDKVREVIPAHEADEEDA 223


>gi|221508402|gb|EEE33989.1| DNA-binding protein HU, putative [Toxoplasma gondii VEG]
          Length = 235

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 55/104 (52%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +TR DLV S++ E  + R +  + V+     I  S  +G+ + +S F +  ++++G RV
Sbjct: 120 AVTRKDLVASVAAELQVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGERV 179

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
            RN +T +++ +       F  S +LK ++ + +   + +++D 
Sbjct: 180 ARNPRTGEQLTVPATTFPTFSFSKVLKDKVREVIPAHEADEEDA 223


>gi|167855819|ref|ZP_02478571.1| DNA-binding protein HU [Haemophilus parasuis 29755]
 gi|219871002|ref|YP_002475377.1| DNA-binding protein HU/transcriptional regulator [Haemophilus
          parasuis SH0165]
 gi|167853032|gb|EDS24294.1| DNA-binding protein HU [Haemophilus parasuis 29755]
 gi|219691206|gb|ACL32429.1| DNA-binding protein HU/transcriptional regulator [Haemophilus
          parasuis SH0165]
          Length = 90

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+    LS+KD+   +    N I +S  +G+++++  F TF V  + +R G
Sbjct: 1  MNKTELVDAIAAGADLSKKDAKAALEATLNAISESLKKGDSVQLIGFGTFKVNHRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +TN+ ++I    V  F A   LK
Sbjct: 61 RNPKTNEAIEIPAANVPAFVAGKALK 86


>gi|302388378|ref|YP_003824200.1| histone family protein DNA-binding protein [Clostridium
          saccharolyticum WM1]
 gi|302199006|gb|ADL06577.1| histone family protein DNA-binding protein [Clostridium
          saccharolyticum WM1]
          Length = 91

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 52/86 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  LS+KD+ + V  L + I +  V+GE I++  F TF V ++ +R G
Sbjct: 1  MNKAELIAAVAEKAELSKKDAEKAVKALTDVISEELVKGEKIQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN ++ + + I   +   FKA   LK
Sbjct: 61 RNPKSGEVMNIPASKTPKFKAGKALK 86


>gi|296447327|ref|ZP_06889255.1| integration host factor, beta subunit [Methylosinus trichosporium
          OB3b]
 gi|296255192|gb|EFH02291.1| integration host factor, beta subunit [Methylosinus trichosporium
          OB3b]
          Length = 96

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 57/96 (59%), Gaps = 1/96 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ I+   G L ++D    VTT+ +EI  +  RG+ +++  F  F VK++ +R 
Sbjct: 1  MIKSELIQRIASRNGHLYQRDVETIVTTILDEIALALARGDRVELRGFGAFSVKRREART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T ++V ++ + V  FK    +++R+ +   G
Sbjct: 61 GRNPRTGEQVSVEEKSVPFFKTGKEMRERLNETSNG 96


>gi|302391837|ref|YP_003827657.1| bacterial nucleoid protein Hbs [Acetohalobium arabaticum DSM
          5501]
 gi|302203914|gb|ADL12592.1| bacterial nucleoid protein Hbs [Acetohalobium arabaticum DSM
          5501]
          Length = 99

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 10/98 (10%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA---------IKISSFATFH 55
          +T+++LV  I+ + GL++KD T+     F E+    ++ EA         +++  F +F 
Sbjct: 1  MTKTELVDRIADKTGLTKKD-TKETVDAFTEVVTETLQEEANKDEDERDKVQLIGFGSFE 59

Query: 56 VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          V+ + +R GRN QT +E++I  R+V  FKA   LK+ +
Sbjct: 60 VRDRSARKGRNPQTGEEIEIPARKVPAFKAGKGLKEAV 97


>gi|323489683|ref|ZP_08094910.1| DNA-binding protein HU (DNA-binding protein II) (HB) [Planococcus
          donghaensis MPA1U2]
 gi|323396814|gb|EGA89633.1| DNA-binding protein HU (DNA-binding protein II) (HB) [Planococcus
          donghaensis MPA1U2]
          Length = 90

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 51/86 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV S+++   LSRKD+ + V   F  I D+  +GE +++  F  F V+++ +R G
Sbjct: 1  MNKTELVNSVAEAAELSRKDAAKAVDAAFETIQDALTKGEKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT  E++I   +V  FK    LK
Sbjct: 61 RNPQTGAEIEIAASKVPAFKPGKALK 86


>gi|170727450|ref|YP_001761476.1| histone family protein DNA-binding protein [Shewanella woodyi
          ATCC 51908]
 gi|169812797|gb|ACA87381.1| histone family protein DNA-binding protein [Shewanella woodyi
          ATCC 51908]
          Length = 90

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + +    + D    G+ I +  F TF V+Q+  R G
Sbjct: 1  MNKSELIEKIASGADISKAAAGRALDSFIEAVTDGLKDGDKISLVGFGTFEVRQRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E+KI    +  FKA   LK  +
Sbjct: 61 RNPQTGAEIKIAAANIPAFKAGKALKDAV 89


>gi|228476872|ref|ZP_04061517.1| DNA-binding protein HU 1 [Streptococcus salivarius SK126]
 gi|322372800|ref|ZP_08047336.1| DNA-binding protein HU [Streptococcus sp. C150]
 gi|228251446|gb|EEK10591.1| DNA-binding protein HU 1 [Streptococcus salivarius SK126]
 gi|321277842|gb|EFX54911.1| DNA-binding protein HU [Streptococcus sp. C150]
          Length = 91

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 47/87 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F  I +    GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVDAVFASIEEFLAAGEKVQLIGFGNFEVRERAARQGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT + + I   +V  FKA   LK  +
Sbjct: 64 PQTGEAISIAASKVPAFKAGKALKDAV 90


>gi|221486645|gb|EEE24906.1| DNA-binding protein HU, putative [Toxoplasma gondii GT1]
          Length = 235

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 55/104 (52%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +TR DLV S++ E  + R +  + V+     I  S  +G+ + +S F +  ++++G RV
Sbjct: 120 AVTRKDLVASVAAELQVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGERV 179

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
            RN +T +++ +       F  S +LK ++ + +   + +++D 
Sbjct: 180 ARNPRTGEQLTVPATTFPTFSFSKVLKDKVREVIPAHEADEEDA 223


>gi|195953425|ref|YP_002121715.1| histone family protein DNA-binding protein [Hydrogenobaculum sp.
          Y04AAS1]
 gi|195933037|gb|ACG57737.1| histone family protein DNA-binding protein [Hydrogenobaculum sp.
          Y04AAS1]
          Length = 89

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 51/87 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  ++++  +++  + + V  +F+ + +S  + E   I  F TF V  + +R G
Sbjct: 1  MTKTELVSYVAQQADITKAKAEKCVNAVFSALAESLKKKERTTIPGFGTFTVSTRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T QE+KI  R   V++ S  LKK
Sbjct: 61 RNPKTGQEIKIPARTTAVWRPSKELKK 87


>gi|295105343|emb|CBL02887.1| Bacterial nucleoid DNA-binding protein [Faecalibacterium
          prausnitzii SL3/3]
          Length = 89

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DL+  ++    +S+K + + V+ +F  +  +   GE I IS F TF V+++  R G
Sbjct: 1  MTKTDLIAQVAANTEMSKKSAEQAVSAVFEALGKAMTEGEKITISGFGTFEVRERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N +T + + I   R +VFK    LK
Sbjct: 61 INPRTREPITIAASRSIVFKPGKSLK 86


>gi|160945509|ref|ZP_02092735.1| hypothetical protein FAEPRAM212_03038 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443240|gb|EDP20245.1| hypothetical protein FAEPRAM212_03038 [Faecalibacterium prausnitzii
           M21/2]
          Length = 108

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++DL+  ++    +S+K + + V+ +F  +  +   GE I IS F TF V+++  R G
Sbjct: 20  MTKTDLIAQVAANTEMSKKSAEQAVSAVFEALGKAMTEGEKITISGFGTFEVRERAERQG 79

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILK 90
            N +T + + I   R +VFK    LK
Sbjct: 80  INPRTREPITIAASRSIVFKPGKSLK 105


>gi|189345750|ref|YP_001942279.1| histone family protein DNA-binding protein [Chlorobium limicola
          DSM 245]
 gi|189339897|gb|ACD89300.1| histone family protein DNA-binding protein [Chlorobium limicola
          DSM 245]
          Length = 91

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++++LV+ I+ + GL++ D+ R V    N +  S   G+ + +  F TF    +  R G
Sbjct: 1  MSKAELVEKIASQAGLTKADAERAVNAFINVVTASLKDGDDVTLVGFGTFTTGDRAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I  ++VV FK    LK  +
Sbjct: 61 RNPQTGETITIAAKKVVKFKPGKALKDEV 89


>gi|332850673|ref|ZP_08432920.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013150]
 gi|332867047|ref|ZP_08437344.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013113]
 gi|332730510|gb|EGJ61826.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013150]
 gi|332734240|gb|EGJ65369.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013113]
          Length = 90

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K I+    L++  +T  +  + + I  +   GE + +  F TF VK++ +R G
Sbjct: 1  MNKSELIKHIASSASLTQAQATAALNAVESGISKALAAGEDVALIGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E++I   +V  FKA   LK+ +
Sbjct: 61 RNPKTGEELQIAASKVPSFKAGKALKEAV 89


>gi|256851012|ref|ZP_05556401.1| integration host factor, beta subunit [Lactobacillus jensenii
          27-2-CHN]
 gi|260661224|ref|ZP_05862138.1| integration host factor, beta subunit [Lactobacillus jensenii
          115-3-CHN]
 gi|282932035|ref|ZP_06337493.1| DNA-binding protein HU [Lactobacillus jensenii 208-1]
 gi|256616074|gb|EEU21262.1| integration host factor, beta subunit [Lactobacillus jensenii
          27-2-CHN]
 gi|260548161|gb|EEX24137.1| integration host factor, beta subunit [Lactobacillus jensenii
          115-3-CHN]
 gi|281303802|gb|EFA95946.1| DNA-binding protein HU [Lactobacillus jensenii 208-1]
          Length = 91

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV  ++ +  L++KD    V  +F  I     +GE +++  F TF V+ + +R GRN
Sbjct: 4  KAELVAEVAAKTKLTKKDVAAAVDAIFASIQQDLAKGEKVQLIGFGTFEVRNRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT  E++I   +V  FK    LK
Sbjct: 64 PQTGVEIEIPASKVPAFKPGKALK 87


>gi|193214421|ref|YP_001995620.1| histone family protein DNA-binding protein [Chloroherpeton
          thalassium ATCC 35110]
 gi|193087898|gb|ACF13173.1| histone family protein DNA-binding protein [Chloroherpeton
          thalassium ATCC 35110]
          Length = 93

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV+ I+ E GL++ DS R +      +  +   G+++ +  F TF V  +  R G
Sbjct: 1  MTKADLVEKIAAESGLTKADSERALNAFVKTVSAALKSGDSVTLVGFGTFTVMDRSEREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I  ++V  FK  + LK  +
Sbjct: 61 RNPKTGESMTIAAKKVPKFKPGATLKNEV 89


>gi|239906700|ref|YP_002953441.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
          RS-1]
 gi|239796566|dbj|BAH75555.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
          RS-1]
          Length = 90

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  I+++ GL++ ++ R +      I ++ V    I ++ F TF V ++ +R G
Sbjct: 1  MTKADLVGKIAEKTGLTKANAERALNAFIEAIEETLVGEGKITLTGFGTFMVDERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  E+ I   +VV F+   +LK  I
Sbjct: 61 RNPRTGAEINIPASKVVKFRPGKLLKDAI 89


>gi|167841225|ref|ZP_02467909.1| integration host factor subunit beta [Burkholderia thailandensis
           MSMB43]
          Length = 107

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 61/103 (59%), Gaps = 3/103 (2%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + D+  +G  I+I  F +F + ++ +RV
Sbjct: 1   MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN ++ ++V++  +RV  FK    L++R+  D R  +  K+D
Sbjct: 61  GRNPKSGEKVQVPEKRVPHFKPGKELRERV--DGRAGEPLKND 101


>gi|261344361|ref|ZP_05972005.1| DNA-binding protein HU [Providencia rustigianii DSM 4541]
 gi|282567632|gb|EFB73167.1| DNA-binding protein HU [Providencia rustigianii DSM 4541]
          Length = 90

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++   L++  +   +    + I DS  +GEA+++  F TF V  + +R G
Sbjct: 1  MNKTELVDAIAESTDLTKTQAKSALEATLSAISDSLKKGEAVQLVGFGTFKVSHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I    V  F A   LK  +
Sbjct: 61 RNPQTKAEIQIPATTVPAFSAGKALKDAV 89


>gi|332971824|gb|EGK10771.1| DNA-binding protein HU-beta [Psychrobacter sp. 1501(2011)]
          Length = 90

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV SI+++ GL++  +   +  +   + ++    + I +  F TF VK + +R G
Sbjct: 1  MNKSELVDSIAEKSGLNKTQAADALNAMMESVGEALENNDTISLVGFGTFSVKDRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  E++I   RV  FKA   LK R+
Sbjct: 61 RNPKTGDELQIPASRVPHFKAGKGLKDRL 89


>gi|328552929|gb|AEB23421.1| putative HU-related DNA-binding protein; phage SPbeta [Bacillus
          amyloliquefaciens TA208]
          Length = 91

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 48/71 (67%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++   +++++ G+++K++T  V  +FN I ++  +GE+IKI    TF V+++ +R G
Sbjct: 1  MNKTEFAGAVAEKLGVTKKEATPKVEAVFNVIVETLTKGESIKIPGVGTFEVRERAARKG 60

Query: 65 RNLQTNQEVKI 75
          RN ++ +E+ I
Sbjct: 61 RNPKSGEEIDI 71


>gi|288957040|ref|YP_003447381.1| integration host factor subunit beta [Azospirillum sp. B510]
 gi|288909348|dbj|BAI70837.1| integration host factor subunit beta [Azospirillum sp. B510]
          Length = 93

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 57/93 (61%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ +   L ++D  + V T+F+EI ++  RG+ +++  F  F +K++ +R 
Sbjct: 1  MTKSELIQRLAERNPHLYQRDIEKIVGTIFDEITEALARGDRVELRGFGAFSIKKRDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V +  + +  FK    L++R+  D
Sbjct: 61 GRNPRTGESVDVGEKCIPFFKTGKQLRERLNTD 93


>gi|226324137|ref|ZP_03799655.1| hypothetical protein COPCOM_01915 [Coprococcus comes ATCC 27758]
 gi|225207686|gb|EEG90040.1| hypothetical protein COPCOM_01915 [Coprococcus comes ATCC 27758]
          Length = 91

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 52/86 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++  +S+KD+ + +    + + +   +GE +++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAVAEQADISKKDAEKVLKAFVDVVTEEMKKGEKVQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + +KI+  +   FKA   LK
Sbjct: 61 RNPQTGKTMKIEACKAPKFKAGKALK 86


>gi|78188340|ref|YP_378678.1| histone-like DNA-binding protein [Chlorobium chlorochromatii
          CaD3]
 gi|78170539|gb|ABB27635.1| Histone-like DNA-binding protein [Chlorobium chlorochromatii
          CaD3]
          Length = 91

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++++LV+ I+K+  L++ D+ R +T   + +  S   G+ + +  F TF V  +  R G
Sbjct: 1  MSKAELVEKIAKQADLTKADAERALTAFVDVMTASLKAGDDVALVGFGTFSVGDRAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I  ++VV FK    LK  I
Sbjct: 61 RNPQTGETITIAAKKVVKFKPGKALKDEI 89


>gi|296116409|ref|ZP_06835023.1| integration host factor subunit beta [Gluconacetobacter hansenii
          ATCC 23769]
 gi|295977002|gb|EFG83766.1| integration host factor subunit beta [Gluconacetobacter hansenii
          ATCC 23769]
          Length = 98

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  ++     L  +D  + V T+F+EI  +  RG+ +++  F  F VK++ SR 
Sbjct: 1  MTKSELIAELAAANPHLPARDIEQIVQTIFHEISAALARGDRVELRGFGAFTVKKRDSRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FKA   L++R+
Sbjct: 61 GRNPRTGEIVAVEEKVVPFFKAGKELRERV 90


>gi|157962499|ref|YP_001502533.1| histone family protein DNA-binding protein [Shewanella pealeana
          ATCC 700345]
 gi|157847499|gb|ABV87998.1| histone family protein DNA-binding protein [Shewanella pealeana
          ATCC 700345]
          Length = 90

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + +    + +    G+ I +  F TF V+Q+  R G
Sbjct: 1  MNKSELIEKIASGADISKAAAGRALDSFIGAVTEGLKEGDKIALVGFGTFEVRQRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+KI    +  FKA   LK
Sbjct: 61 RNPQTGKEIKIAAANIPAFKAGKALK 86


>gi|327405558|ref|YP_004346396.1| histone family protein DNA-binding protein [Fluviicola taffensis
          DSM 16823]
 gi|327321066|gb|AEA45558.1| histone family protein DNA-binding protein [Fluviicola taffensis
          DSM 16823]
          Length = 90

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 49/85 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+ E GLS+ D+ + +         +  +G+ I +  F +F V ++ +R G
Sbjct: 1  MNKAELIDAIASEAGLSKADAKKALDAFVGATAGALKKGDRISLVGFGSFSVSKREARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN QT +E+ I  + VV FKA + L
Sbjct: 61 RNPQTGKEIAIAAKNVVRFKAGAEL 85


>gi|75674257|ref|YP_316678.1| integration host factor subunit beta [Nitrobacter winogradskyi
           Nb-255]
 gi|123759426|sp|Q3SWL5|IHFB_NITWN RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|74419127|gb|ABA03326.1| integration host factor, beta subunit [Nitrobacter winogradskyi
           Nb-255]
          Length = 101

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 10/110 (9%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV+ I++    L ++D    V  + +EI  +  RG+ +++  F  F VK + +R 
Sbjct: 1   MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           GRN +T + V +D + V  FK    +++R+         N+D+ TS + +
Sbjct: 61  GRNPRTGEHVPVDQKSVPFFKTGKEMRERL---------NRDNATSEANA 101


>gi|114568651|ref|YP_755331.1| integration host factor subunit beta [Maricaulis maris MCS10]
 gi|122317015|sp|Q0ATJ4|IHFB_MARMM RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|114339113|gb|ABI64393.1| integration host factor, beta subunit [Maricaulis maris MCS10]
          Length = 101

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L+  +++    L  +D  R V T+ + I D+  RGE +++  F  F V+ + +RV
Sbjct: 1  MIKSELIDQLAEANPHLYHRDVERVVNTILDGITDALARGERVELRGFGAFSVRHRPARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  + V  FK    L++R+
Sbjct: 61 GRNPRTGESVAVKEKHVPFFKTGKELRERV 90


>gi|20808810|ref|NP_623981.1| nucleoid DNA-binding protein [Thermoanaerobacter tengcongensis
          MB4]
 gi|20517460|gb|AAM25585.1| Bacterial nucleoid DNA-binding protein [Thermoanaerobacter
          tengcongensis MB4]
          Length = 91

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  I+++  L++KD+ + +      + ++   G+ +++  F TF V+++  R G
Sbjct: 1  MNKAELVAKIAEKSELTKKDAEKALNAFIEAVQEALKNGDKVQLVGFGTFEVRERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+ I   +  +FKA   LK
Sbjct: 61 RNPQTREEITIPASKAPIFKAGKALK 86


>gi|116513919|ref|YP_812825.1| nucleoid DNA-binding protein [Lactobacillus delbrueckii subsp.
          bulgaricus ATCC BAA-365]
 gi|116093234|gb|ABJ58387.1| bacterial nucleoid protein Hbs [Lactobacillus delbrueckii subsp.
          bulgaricus ATCC BAA-365]
          Length = 91

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 47/84 (55%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV  ++ +  L++KD +  V  +F  I +   +GE +++  F TF V+ + +R GRN
Sbjct: 4  KAELVSEVAAKTKLTKKDVSEAVDAVFEAIQEDLAKGEKVQLIGFGTFEVRDRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT  E++I   +   FK    LK
Sbjct: 64 PQTGAEIEIPASKGPAFKPGKALK 87


>gi|167755951|ref|ZP_02428078.1| hypothetical protein CLORAM_01471 [Clostridium ramosum DSM 1402]
 gi|237733268|ref|ZP_04563749.1| predicted protein [Mollicutes bacterium D7]
 gi|167703943|gb|EDS18522.1| hypothetical protein CLORAM_01471 [Clostridium ramosum DSM 1402]
 gi|229383649|gb|EEO33740.1| predicted protein [Coprobacillus sp. D7]
          Length = 91

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV++I+    +++ D  + VT   + + ++ V+G+ + +  F  F V+++G R G
Sbjct: 1  MNKTELVEAIASSTEMTKTDVDKVVTAFVDVVTEALVKGDKVSLKGFGNFEVRERGERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I   +   FK+SS LK  +
Sbjct: 61 RNPRTGETMTIAASKAPAFKSSSALKNAV 89


>gi|326335932|ref|ZP_08202109.1| DNA-binding protein HU [Capnocytophaga sp. oral taxon 338 str.
          F0234]
 gi|325691896|gb|EGD33858.1| DNA-binding protein HU [Capnocytophaga sp. oral taxon 338 str.
          F0234]
          Length = 90

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 52/85 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I++E GL++ D+ + +      +  +  +G+ I +  F ++ V +K +R G
Sbjct: 1  MNKTELIDAIAEEAGLTKADAKKALEAFLACVEKTLKKGDKISLVGFGSWSVAEKAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN QT + +KI  ++VV FKA + L
Sbjct: 61 RNPQTGKTIKIPAKKVVKFKAGTEL 85


>gi|55821216|ref|YP_139658.1| histone-like DNA-binding protein [Streptococcus thermophilus LMG
          18311]
 gi|55823128|ref|YP_141569.1| histone-like DNA-binding protein [Streptococcus thermophilus
          CNRZ1066]
 gi|116627943|ref|YP_820562.1| histone-like DNA-binding protein [Streptococcus thermophilus
          LMD-9]
 gi|3334160|sp|P96045|DBH_STRTR RecName: Full=DNA-binding protein HU
 gi|1850896|emb|CAA72098.1| hsth [Streptococcus thermophilus]
 gi|55737201|gb|AAV60843.1| histone-like DNA-binding protein [Streptococcus thermophilus LMG
          18311]
 gi|55739113|gb|AAV62754.1| histone-like DNA-binding protein [Streptococcus thermophilus
          CNRZ1066]
 gi|116101220|gb|ABJ66366.1| bacterial nucleoid protein Hbs [Streptococcus thermophilus LMD-9]
 gi|312278530|gb|ADQ63187.1| Histone-like DNA binding protein [Streptococcus thermophilus
          ND03]
          Length = 91

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 47/87 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F  I +    GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVDAVFASIEEFLAAGEKVQLIGFGNFEVRERAARQGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT + + I   +V  FKA   LK  +
Sbjct: 64 PQTGETISIAASKVPAFKAGKALKDAV 90


>gi|302388697|ref|YP_003824518.1| bacterial nucleoid protein Hbs [Thermosediminibacter oceani DSM
          16646]
 gi|302199325|gb|ADL06895.1| bacterial nucleoid protein Hbs [Thermosediminibacter oceani DSM
          16646]
          Length = 91

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  ++++ GL++KDS + +      + ++  + + +++  F TF V+++  R G
Sbjct: 1  MNKAELVSVMAEKSGLTKKDSEKALNAFIEAVSEALSKRDKVQLVGFGTFEVRERSQRKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I    +  FKA   LK  I
Sbjct: 61 RNPQTGEEIDIPAASIPAFKAGKALKDSI 89


>gi|144899463|emb|CAM76327.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum
          gryphiswaldense MSR-1]
          Length = 90

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV +++   GLS+ D+ + V  +F+ I  +   G+ +++  F TF V ++ +  G
Sbjct: 1  MNKNDLVTAVAASAGLSKADAAKAVDGVFDAISGALAGGDDVRLVGFGTFAVSERAASEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + +KI   +   FKA   LK  +
Sbjct: 61 RNPRTGETIKIPASKQPKFKAGKGLKDSV 89


>gi|229829761|ref|ZP_04455830.1| hypothetical protein GCWU000342_01858 [Shuttleworthia satelles DSM
           14600]
 gi|229791750|gb|EEP27864.1| hypothetical protein GCWU000342_01858 [Shuttleworthia satelles DSM
           14600]
          Length = 122

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 50/86 (58%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++LV +I+++  LS+KD+   +    + +  S  +GE I++  F TF V ++ +R G
Sbjct: 32  MNKTELVAAIAEQADLSKKDAEAALKAFTDVVSKSLKKGEKIQLVGFGTFEVSKRSARTG 91

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILK 90
           RN QT + +KI   +   FKA   LK
Sbjct: 92  RNPQTGKTMKIAASKAPKFKAGKALK 117


>gi|167461596|ref|ZP_02326685.1| DNA-binding protein HU [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 114

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 55/89 (61%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +  LV+ ++K  G S+K++ + VT + + I ++  +G+ +++  F  F V+ + +R+G
Sbjct: 23  MNKEQLVEVVAKSSGFSKKNAEKAVTHVLDSIFEALKQGKEVQLVGFGKFDVRSREARMG 82

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T +EV++   +V VF A   LKK +
Sbjct: 83  RNRKTGEEVELPAGKVPVFTAGITLKKAL 111


>gi|46581376|ref|YP_012184.1| integration host factor subunit beta [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|120601447|ref|YP_965847.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris DP4]
 gi|46450798|gb|AAS97444.1| integration host factor, beta subunit [Desulfovibrio vulgaris
          str. Hildenborough]
 gi|120561676|gb|ABM27420.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris DP4]
 gi|311235034|gb|ADP87888.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris RCH1]
          Length = 91

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LVK +++   +  ++S+  V   F+ + D+ ++G+ ++I  F +F VK      G
Sbjct: 1  MNKSELVKMLAENHEIPAEESSVIVNLFFDSVRDALLQGDRVEIRGFGSFKVKGYRGYKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   V++ P+R+ VF+A   LK+ I
Sbjct: 61 RNPKTGDNVEVPPKRLPVFRAGKELKEII 89


>gi|322381499|ref|ZP_08055479.1| non-specific DNA-binding protein Hbsu/signal recognition
           particle-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|322382684|ref|ZP_08056542.1| non-specific DNA-binding protein Hbsu/signal recognition
           particle-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153345|gb|EFX45775.1| non-specific DNA-binding protein Hbsu/signal recognition
           particle-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321154541|gb|EFX46837.1| non-specific DNA-binding protein Hbsu/signal recognition
           particle-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 119

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 55/89 (61%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +  LV+ ++K  G S+K++ + VT + + I ++  +G+ +++  F  F V+ + +R+G
Sbjct: 28  MNKEQLVEVVAKSSGFSKKNAEKAVTHVLDSIFEALKQGKEVQLVGFGKFDVRSREARMG 87

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T +EV++   +V VF A   LKK +
Sbjct: 88  RNRKTGEEVELPAGKVPVFTAGITLKKAL 116


>gi|148251722|ref|YP_001236307.1| integration host factor subunit beta [Bradyrhizobium sp. BTAi1]
 gi|166918540|sp|A5E8A7|IHFB_BRASB RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|146403895|gb|ABQ32401.1| Integration host factor beta-subunit (IHF-beta) [Bradyrhizobium sp.
           BTAi1]
          Length = 103

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 1/103 (0%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV+ I++    L ++D    V  + +EI  +  RG+ +++  F  F VK + +R 
Sbjct: 1   MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN +T   V +D + V  FK    +++R+  D      + DD
Sbjct: 61  GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRDNPAGAADTDD 103


>gi|229014688|ref|ZP_04171798.1| DNA-binding protein HU [Bacillus mycoides DSM 2048]
 gi|228746594|gb|EEL96487.1| DNA-binding protein HU [Bacillus mycoides DSM 2048]
          Length = 93

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K ++++  L++K++      + N I ++    + ++I  F TF V+++ +R G
Sbjct: 4  MNKTELTKMVAEKAELTQKEAAAATQAVLNAITNALANEDKVQILGFGTFEVRERSARTG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +   FKA   LK+ +
Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKELKEAV 92


>gi|308050305|ref|YP_003913871.1| histone family protein DNA-binding protein [Ferrimonas balearica
          DSM 9799]
 gi|307632495|gb|ADN76797.1| histone family protein DNA-binding protein [Ferrimonas balearica
          DSM 9799]
          Length = 90

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R + +  + I  S   GE I +  F TF V+++  R G
Sbjct: 1  MNKSQLIDQIASGADISKAAAGRALDSFIDAITASLKDGEKISLVGFGTFEVRERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI   ++  FKA   LK  +
Sbjct: 61 RNPQTGKEIKIAAAKIPAFKAGKALKDAV 89


>gi|48696914|ref|YP_024677.1| gp04 [Burkholderia phage BcepMu]
 gi|197295397|ref|YP_002153938.1| HU DNA-binding protein [Burkholderia cenocepacia J2315]
 gi|44829477|gb|AAS47844.1| gp04 [Burkholderia phage BcepMu]
 gi|195944876|emb|CAR57482.1| HU DNA-binding protein [Burkholderia cenocepacia J2315]
          Length = 90

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+  ++ E G+++ DS   +  +   I  S  +G+ + ++ F  F V  + +R G
Sbjct: 1  MNKSDLINHVAAETGMTKTDSGFALEAVLEGITKSLRKGDTVTLTGFGVFSVGARAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T +E+KI   +   FKA   LK  +
Sbjct: 61 RNPATGEEIKIPASKAPKFKAGKGLKDAV 89


>gi|332288957|ref|YP_004419809.1| transcriptional regulator HU subunit alpha [Gallibacterium anatis
          UMN179]
 gi|330431853|gb|AEC16912.1| transcriptional regulator HU subunit alpha [Gallibacterium anatis
          UMN179]
          Length = 90

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  I+++  LS+KDS   +      I +S   G+A+++  F TF V Q+  R G
Sbjct: 1  MNKTELVDVIAEKTKLSKKDSKAALEAALEAITESLKAGDAVQLIGFGTFKVNQRQERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+KI   +V  F +   LK
Sbjct: 61 RNPQTGKEIKIPATKVPAFVSGKALK 86


>gi|312862684|ref|ZP_07722924.1| DNA-binding protein HU-beta [Streptococcus vestibularis F0396]
 gi|322516639|ref|ZP_08069553.1| DNA-binding protein HU [Streptococcus vestibularis ATCC 49124]
 gi|311101544|gb|EFQ59747.1| DNA-binding protein HU-beta [Streptococcus vestibularis F0396]
 gi|322124909|gb|EFX96333.1| DNA-binding protein HU [Streptococcus vestibularis ATCC 49124]
          Length = 91

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 47/87 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F  I +    GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVDAVFASIEEFLATGEKVQLIGFGNFEVRERAARQGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT + + I   +V  FKA   LK  +
Sbjct: 64 PQTGETISIAASKVPAFKAGKALKDAV 90


>gi|317133959|ref|YP_004089870.1| histone family protein DNA-binding protein [Ruminococcus albus 7]
 gi|315450421|gb|ADU23984.1| histone family protein DNA-binding protein [Ruminococcus albus 7]
          Length = 96

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+++ G ++K++ + +TT+ + I  +   GE + +  F TF V+++ ++V 
Sbjct: 1  MNKAELINVIAEKGGYTKKEADKVLTTVLDTIAGALENGEKVTLVGFGTFEVRERAAKVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T   V +  R+V  FKA   LK+ +
Sbjct: 61 LNPVTKAPVDVPARKVPAFKAGQALKEAV 89


>gi|300721652|ref|YP_003710927.1| DNA-binding protein HU-alpha [Xenorhabdus nematophila ATCC 19061]
 gi|297628144|emb|CBJ88695.1| DNA-binding protein HU-alpha (HU-2), plays a role in DNA
          replication and in rpo translation [Xenorhabdus
          nematophila ATCC 19061]
          Length = 90

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+    L++  +   + +  N I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTELVDAIAAGADLTKTQAKAALESTLNAITESLKNGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F A   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFSAGKALKDAV 89


>gi|269138351|ref|YP_003295051.1| transcriptional regulator HU subunit beta [Edwardsiella tarda
          EIB202]
 gi|267984011|gb|ACY83840.1| transcriptional regulator HU subunit beta [Edwardsiella tarda
          EIB202]
 gi|304558383|gb|ADM41047.1| DNA-binding protein HU-beta [Edwardsiella tarda FL6-60]
          Length = 90

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I++   +S+  + R +      + +S   G+A+ +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAEGADISKAAAGRALDAFIASVTESLQEGDAVALVGFGTFDVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT QE+ I   +V  F+A   LK  +
Sbjct: 61 RNPQTGQEIDIPAAKVPGFRAGKALKDAV 89


>gi|304392325|ref|ZP_07374266.1| integration host factor, beta subunit [Ahrensia sp. R2A130]
 gi|303295429|gb|EFL89788.1| integration host factor, beta subunit [Ahrensia sp. R2A130]
          Length = 93

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S LV++IS     L ++D    V  + +EI ++  RG+ +++  F  F VK +  RV
Sbjct: 1  MIKSSLVQTISDNNPHLYQRDVENIVNAILDEITEALARGDRVELRGFGAFSVKNRNPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V+++ + V  FK    L+ R+  D
Sbjct: 61 GRNPRTGERVEVEEKWVPFFKTGKDLRDRLNAD 93


>gi|71066029|ref|YP_264756.1| putative DNA-binding protein HU-beta [Psychrobacter arcticus
          273-4]
 gi|71039014|gb|AAZ19322.1| putative DNA-binding protein HU-beta [Psychrobacter arcticus
          273-4]
          Length = 90

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ SI+++ GL++  +   +  +   + ++   G++I +  F TF VK + +R G
Sbjct: 1  MNKSELIDSIAEKSGLNKTQAGDALNAVMESVGEALEAGDSISLVGFGTFSVKDRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E+ I   +   FKA   LK+R+
Sbjct: 61 RNPKTGEELSIPASKAPSFKAGKNLKERL 89


>gi|309796446|ref|ZP_07690854.1| DNA-binding protein HU [Escherichia coli MS 145-7]
 gi|308119951|gb|EFO57213.1| DNA-binding protein HU [Escherichia coli MS 145-7]
          Length = 90

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  ++++  +S+  +   V  L N + +    G  + ++ F TFHVK++ +R G
Sbjct: 1  MNKSELIMKVAEDADISKAKAEAAVNALINSVKEVLKAGGTVALTGFGTFHVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I    +  FKA   LK  +
Sbjct: 61 RNPQTGENIQIAAANIPGFKAGKGLKDSV 89


>gi|163856201|ref|YP_001630499.1| integration host factor beta-subunit [Bordetella petrii DSM 12804]
 gi|226709770|sp|A9IJJ1|IHFB_BORPD RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|163259929|emb|CAP42230.1| integration host factor beta-subunit [Bordetella petrii]
          Length = 119

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 62/109 (56%), Gaps = 7/109 (6%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+ +++  +  L+ +D+   V T+ + +  +   G+ I+I  F +F + Q+  RV
Sbjct: 1   MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSG 112
           GRN ++ ++V +  ++V  FKA   L++R+  D+ G   +    T P G
Sbjct: 61  GRNPKSGEQVLVPGKQVPHFKAGKELRERV--DLAGGLAD----TQPDG 103


>gi|323519066|gb|ADX93447.1| nucleoid DNA-binding protein [Acinetobacter baumannii
          TCDC-AB0715]
          Length = 90

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K I+    L++  +T  +  + + I  +   G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSELIKHIASSASLTQAQATAALNAVESGISKALAAGDDVALIGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E+KI   +V  FKA   LK+ +
Sbjct: 61 RNPKTGEELKIAAAKVPSFKAGKALKEAV 89


>gi|330817268|ref|YP_004360973.1| Probable dna-binding protein hu-beta [Burkholderia gladioli BSR3]
 gi|327369661|gb|AEA61017.1| Probable dna-binding protein hu-beta [Burkholderia gladioli BSR3]
          Length = 90

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  I++E  LS+  + R +  L   +  +   G ++ ++ F TF V ++ +R G
Sbjct: 1  MNKTDLIDHIAREADLSKASAGRALDALIAGVVQALESGGSVTLAGFGTFEVGERIARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + ++I+  RV  F+A   LK
Sbjct: 61 RNPQTGETIRIEAARVAKFRAGKALK 86


>gi|311104917|ref|YP_003977770.1| integration host factor subunit beta [Achromobacter xylosoxidans
           A8]
 gi|310759606|gb|ADP15055.1| integration host factor, beta subunit [Achromobacter xylosoxidans
           A8]
          Length = 119

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 65/110 (59%), Gaps = 6/110 (5%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+ +++  +  L+ +D+   V T+ + +  +   G+ I+I  F +F + Q+  R+
Sbjct: 1   MTKSELIAALAARYPQLAARDTDYAVKTVLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           GRN ++ ++V +  ++V  FKA   L++R+  D+ G   N +D  S SGS
Sbjct: 61  GRNPKSGEQVLVPGKQVPHFKAGKELRERV--DLAG--GNDEDAQS-SGS 105


>gi|242279062|ref|YP_002991191.1| histone family protein DNA-binding protein [Desulfovibrio
          salexigens DSM 2638]
 gi|242121956|gb|ACS79652.1| histone family protein DNA-binding protein [Desulfovibrio
          salexigens DSM 2638]
          Length = 91

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+KS+++E GL   +S   V    + I ++ VRG+ ++I  F +F +K+     G
Sbjct: 1  MNKSELIKSLAEEKGLHVDESAEIVDAFVDAIKEALVRGDRVEIRGFGSFKMKEYKGYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   V + P+++  F+    LK+ +
Sbjct: 61 RNPKTGDVVDVTPKKLPFFRPGKELKEYL 89


>gi|313159521|gb|EFR58884.1| DNA-binding protein HU-beta [Alistipes sp. HGB5]
          Length = 86

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 49/82 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV++I+ +  +S+ D+ + V  +      S   GE + ++   TF V+QK +RVG
Sbjct: 1  MNKAQLVEAIALDANISKIDARKAVDAIIRVTVQSLREGERLTLTGLGTFSVQQKAARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN +T+  VKI PR+ V F+ +
Sbjct: 61 RNPRTSAAVKIPPRKAVKFRPT 82


>gi|290474660|ref|YP_003467540.1| DNA-binding protein HU-beta [Xenorhabdus bovienii SS-2004]
 gi|289173973|emb|CBJ80760.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Xenorhabdus
          bovienii SS-2004]
          Length = 96

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R V    + + D+   G+ + +  F TF V+++ +R G
Sbjct: 6  VNKSQLIDKIAADVNISKAAAGRVVDAFISSVSDALKDGDDVVLVGFGTFTVRERAARTG 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI   +V  F+A   LK  +
Sbjct: 66 RNPQTGKEIKIAAAKVPAFRAGKGLKDAV 94


>gi|297570483|ref|YP_003691827.1| histone family protein DNA-binding protein [Desulfurivibrio
          alkaliphilus AHT2]
 gi|296926398|gb|ADH87208.1| histone family protein DNA-binding protein [Desulfurivibrio
          alkaliphilus AHT2]
          Length = 91

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++++++   L  +++     T+   +  +  RGE I+I  F +F VK+  S  G
Sbjct: 1  MNKSELIEALARNTELPIREAGAVTGTILEAMTAAMARGENIEIRGFGSFVVKEYESYYG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +++K+ P+R+  FK    L++++
Sbjct: 61 RNPKTGEKIKVPPKRLPFFKVGKELREKL 89


>gi|254000458|ref|YP_003052521.1| histone family protein DNA-binding protein [Methylovorus sp.
          SIP3-4]
 gi|313202418|ref|YP_004041076.1| histone family protein DNA-binding protein [Methylovorus sp.
          MP688]
 gi|253987137|gb|ACT51994.1| histone family protein DNA-binding protein [Methylovorus sp.
          SIP3-4]
 gi|312441734|gb|ADQ85840.1| histone family protein DNA-binding protein [Methylovorus sp.
          MP688]
          Length = 90

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L++ I+   G+S+  + + +    + +  +  +G+++ +  F TF V ++ +R G
Sbjct: 1  MNKQELIEEIATSAGISKAAAGKVIDAFTSSVTGALKKGDSVTLIGFGTFAVSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+KI  R+   F+A   LK
Sbjct: 61 RNPQTGKEIKIAARKAPAFRAGKALK 86


>gi|298208491|ref|YP_003716670.1| probable DNA-binding protein HU [Croceibacter atlanticus
          HTCC2559]
 gi|83848414|gb|EAP86283.1| probable DNA-binding protein HU [Croceibacter atlanticus
          HTCC2559]
          Length = 90

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+ +++++ G+S+  + + + +    I     +G+ I +  F ++ V ++ +R G
Sbjct: 1  MNKSDLIDAMAEDAGVSKAAAKKALESFLGHIEKGLKKGDRISLVGFGSWSVSKRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + +KI  + VV FKA S L+K +
Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGSDLQKAV 89


>gi|303245326|ref|ZP_07331610.1| histone family protein DNA-binding protein [Desulfovibrio
          fructosovorans JJ]
 gi|302493175|gb|EFL53037.1| histone family protein DNA-binding protein [Desulfovibrio
          fructosovorans JJ]
          Length = 90

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 2/90 (2%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA-IKISSFATFHVKQKGSRV 63
          +T++DLV  I+++ GL++ ++ R +   F E  ++ + GE  I ++ F TF V ++ +R 
Sbjct: 1  MTKADLVGKIAEKTGLTKANAERALNA-FIEAIEATLVGEGKITLTGFGTFMVDERKART 59

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  E+ I   +VV F+   +LK  I
Sbjct: 60 GRNPRTGAEINIPASKVVKFRPGKLLKDAI 89


>gi|117926043|ref|YP_866660.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
 gi|117609799|gb|ABK45254.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
          Length = 91

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+ +++++  L ++ +   V  +FNE+  +  +GE +++  F  F  + +  R  
Sbjct: 1  MTKSELILAVAEQNTLHKQSAVMVVDMVFNELGKALAKGERVELRGFGVFEPRARKPRTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +N +T ++V ++P+  V FK    ++KR+
Sbjct: 61 KNPKTGEKVNVEPKTAVHFKPGLDMRKRV 89


>gi|303230302|ref|ZP_07317069.1| DNA-binding protein HU 1 [Veillonella atypica ACS-134-V-Col7a]
 gi|302515085|gb|EFL57060.1| DNA-binding protein HU 1 [Veillonella atypica ACS-134-V-Col7a]
          Length = 99

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  L++KD+ + V  +F+ + +    G  +++  F TF V+++ +R G
Sbjct: 1  MNKTELIASVAQKTELTKKDAEKAVKAVFDTVAEELAAGGKVQVIGFGTFEVRERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN Q  + + I   +   FKA   LK+++
Sbjct: 61 RNPQNGKTITIKASKSPAFKAGKGLKEQV 89


>gi|229021542|ref|ZP_04178141.1| DNA-binding protein HU [Bacillus cereus AH1273]
 gi|229027531|ref|ZP_04183759.1| DNA-binding protein HU [Bacillus cereus AH1272]
 gi|229112981|ref|ZP_04242483.1| DNA-binding protein HU [Bacillus cereus Rock1-15]
 gi|229164897|ref|ZP_04292713.1| DNA-binding protein HU [Bacillus cereus R309803]
 gi|228618548|gb|EEK75558.1| DNA-binding protein HU [Bacillus cereus R309803]
 gi|228670462|gb|EEL25803.1| DNA-binding protein HU [Bacillus cereus Rock1-15]
 gi|228733777|gb|EEL84543.1| DNA-binding protein HU [Bacillus cereus AH1272]
 gi|228739775|gb|EEL90173.1| DNA-binding protein HU [Bacillus cereus AH1273]
          Length = 90

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K ++++  L++KD+      + + I  +    E ++I  F TF V+++ +R G
Sbjct: 1  MNKTELTKVVAEKAELTQKDAAAATQAVLDTITTALASEEKVQILGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I   +V  FKA   LK
Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELK 86


>gi|145596669|ref|YP_001160966.1| histone family protein DNA-binding protein [Salinispora tropica
          CNB-440]
 gi|145306006|gb|ABP56588.1| histone family protein DNA-binding protein [Salinispora tropica
          CNB-440]
          Length = 91

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          LV++++ + GL++  +   +  +   I D+   GE + I  F TF VK + +R GRN +T
Sbjct: 6  LVETVAAKAGLTKTAAESALDAMVEAISDALADGEKVAIPGFGTFEVKDRPARTGRNPRT 65

Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93
           + ++I  R+   FK ++ LK  +
Sbjct: 66 GETMEIAARKAPGFKPATALKNEV 89


>gi|282600358|ref|ZP_05974005.2| DNA-binding protein HU-beta [Providencia rustigianii DSM 4541]
 gi|282565675|gb|EFB71210.1| DNA-binding protein HU-beta [Providencia rustigianii DSM 4541]
          Length = 96

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L++ ++ E  +S+  + R V      +  S  +G+ + +  F TF V+++ +R+G
Sbjct: 6  VNKSQLIEKVASEANISKAAAGRVVDAFVASVTGSLKKGDDVTLVGFGTFSVRKRAARIG 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+KI    V  F+A   LK
Sbjct: 66 RNPQTGKEIKIAAATVPAFRAGKGLK 91


>gi|153815229|ref|ZP_01967897.1| hypothetical protein RUMTOR_01463 [Ruminococcus torques ATCC
          27756]
 gi|317502314|ref|ZP_07960483.1| DNA-binding protein HU [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089918|ref|ZP_08338810.1| DNA-binding protein HU [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145847488|gb|EDK24406.1| hypothetical protein RUMTOR_01463 [Ruminococcus torques ATCC
          27756]
 gi|316896270|gb|EFV18372.1| DNA-binding protein HU [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403150|gb|EGG82711.1| DNA-binding protein HU [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 90

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I++   +S+KDS + +    + + +   +GE +++  F TF V ++ +R G
Sbjct: 1  MNKTELITAIAESADISKKDSEKALKAFVDVVTEELKKGEKVQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + +KI+  +   FKA   LK  I
Sbjct: 61 RNPQTGKTMKIEACKAPKFKAGKALKDAI 89


>gi|296533549|ref|ZP_06896119.1| integration host factor beta subunit [Roseomonas cervicalis ATCC
          49957]
 gi|296266119|gb|EFH12174.1| integration host factor beta subunit [Roseomonas cervicalis ATCC
          49957]
          Length = 108

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  ++     L + D    V T+FNEI  +  RG+ +++  F  F  KQ+ +R 
Sbjct: 1  MTKSELIAQLAAANPHLRQPDVELIVGTIFNEITAALSRGDRVELRGFGAFSAKQRDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V++  + V  FK    L++R+
Sbjct: 61 GRNPRTGEAVEVAGKAVPYFKPGKELRERV 90


>gi|254490897|ref|ZP_05104079.1| integration host factor, beta subunit [Methylophaga thiooxidans
          DMS010]
 gi|224463806|gb|EEF80073.1| integration host factor, beta subunit [Methylophaga thiooxydans
          DMS010]
          Length = 96

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+SDL++ +S K+  L+ +D    V  +  ++ DS  +G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSDLIEVLSEKQSLLNYRDVELAVKLILEQMSDSLSQGDRIEIRGFGSFTLHHRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN ++ + VK+D + V  FK    L+ R+ D
Sbjct: 61 GRNPKSGESVKLDEKYVPHFKPGKELRDRVND 92


>gi|118594371|ref|ZP_01551718.1| Bacterial nucleoid DNA-binding protein [Methylophilales bacterium
          HTCC2181]
 gi|118440149|gb|EAV46776.1| Bacterial nucleoid DNA-binding protein [Methylophilales bacterium
          HTCC2181]
          Length = 90

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+++++   G ++ ++ R +      +  +  +G+++ +  F TF V ++ +R G
Sbjct: 1  MNKGELIEAVASATGSTKAEAGRAIDATVAAVTGALKKGDSVTLIGFGTFKVAKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E+KI  R V  FKA + LK  +
Sbjct: 61 RNPQTGAELKIAARTVPSFKAGAALKAAV 89


>gi|325264325|ref|ZP_08131056.1| DNA-binding protein HU [Clostridium sp. D5]
 gi|324030396|gb|EGB91680.1| DNA-binding protein HU [Clostridium sp. D5]
          Length = 91

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+++  +S+KDS + +    + + D   +G+ +++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAIAEKAEISKKDSEKALKAFIDVVSDQLKKGDKVQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + +KI   +   FKA   LK  +
Sbjct: 61 RNPQTGKTMKIAACKAPKFKAGKALKDEV 89


>gi|289207761|ref|YP_003459827.1| histone family protein DNA-binding protein [Thioalkalivibrio sp.
          K90mix]
 gi|288943392|gb|ADC71091.1| histone family protein DNA-binding protein [Thioalkalivibrio sp.
          K90mix]
          Length = 90

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+ E  + +  + R +  +   + D+  +G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSELIDAIAAEADVPKAQAGRMLDAMVTVVGDTLAKGDQVSLVGFGTFLVREREARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T Q ++I   +   FKA   LK R+
Sbjct: 61 RNPRTGQSIQIAASKTPSFKAGKALKDRV 89


>gi|21672413|ref|NP_660480.1| integration host factor alpha-subunit [Buchnera aphidicola str.
          Sg (Schizaphis graminum)]
 gi|25008628|sp|Q8KA11|IHFA_BUCAP RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|21623022|gb|AAM67691.1| integration host factor Alpha-subunit [Buchnera aphidicola str.
          Sg (Schizaphis graminum)]
          Length = 100

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 55/89 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++ + +++ ++  L+++DS  FV   F E+  S  +GE +K+S F  F +K K  R G
Sbjct: 3  VTKAAISENLFEKLKLTKRDSKEFVEFFFEEVRKSLEKGEDVKLSGFGNFQLKNKKERPG 62

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I  RRVV+FKA   LK R+
Sbjct: 63 RNPRTGENILITQRRVVIFKAGQKLKNRV 91


>gi|326385528|ref|ZP_08207167.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens
          DSM 19370]
 gi|326210067|gb|EGD60845.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens
          DSM 19370]
          Length = 90

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++   GLS+ D+T+ V  +F+ I  S  +G+ +++  F TF V ++ +  G
Sbjct: 1  MNKNDLISAVADASGLSKGDATKAVEAVFDSITGSLAKGDEVRLVGFGTFSVAKRKASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I       FKA   LK  +
Sbjct: 61 RNPRTGEPMSIKASAQPKFKAGKGLKDAV 89


>gi|300703991|ref|YP_003745593.1| DNA-binding protein hu-beta, transcriptional regulator subunit
          beta [Ralstonia solanacearum CFBP2957]
 gi|299071654|emb|CBJ42978.1| DNA-binding protein HU-beta, transcriptional regulator, beta
          subunit [Ralstonia solanacearum CFBP2957]
          Length = 90

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ + GL + D+ R +  + + I  +   G  + ++ F +F V  + +R+G
Sbjct: 1  MNKAVLIAHIADQAGLKKTDANRALDAVLDGIRSTLADGGTVSLTGFGSFSVGARPARIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +EV+I    VV FKA S LK  +
Sbjct: 61 RNPRTGEEVEIAASHVVKFKAGSDLKAAV 89


>gi|218961276|ref|YP_001741051.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Candidatus Cloacamonas acidaminovorans]
 gi|167729933|emb|CAO80845.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Candidatus Cloacamonas acidaminovorans]
          Length = 93

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          ++R +LVK I+   G S+K ++  +T +   I +S  +GE + +  F +F V  + +R G
Sbjct: 1  MSRDELVKKIAANAGTSQKVASAALTAVLEGITESLKKGEKVSLVGFGSFSVAHRKARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T + +KI  R V VFKA   LK+ +
Sbjct: 61 INPKTKKPLKIPARNVPVFKAGKNLKEAV 89


>gi|329894936|ref|ZP_08270735.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC3088]
 gi|328922665|gb|EGG30000.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC3088]
          Length = 91

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    +S+  + R +  +   I  +  +G+++ +  F TF VK + +R G
Sbjct: 1  MNKSELIDAIAASADISKASAGRALDAVVESITGALQKGDSVSLVGFGTFQVKPRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I    V  FKA   LK  +
Sbjct: 61 RNPQTGAEIQIAAANVPGFKAGKALKDAV 89


>gi|297571677|ref|YP_003697451.1| histone family protein DNA-binding protein [Arcanobacterium
          haemolyticum DSM 20595]
 gi|296932024|gb|ADH92832.1| histone family protein DNA-binding protein [Arcanobacterium
          haemolyticum DSM 20595]
          Length = 93

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R++L+  I++E  +++ D+ + ++ L + + +S  +GEA+KI+   +    ++ +R 
Sbjct: 2  SLNRTELIAKIAEEASITKTDADKAISALQSVLVESLAKGEAVKITGLMSVERTERAARK 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+KI     V   A S LKK +
Sbjct: 62 GRNPRTGEEIKIPAGYGVKISAGSTLKKAV 91


>gi|162148929|ref|YP_001603390.1| integration host factor subunit beta [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209545315|ref|YP_002277544.1| integration host factor subunit beta [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|189045037|sp|A9H0B5|IHFB_GLUDA RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|161787506|emb|CAP57102.1| putative integration host factor beta-subunit [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209532992|gb|ACI52929.1| integration host factor, beta subunit [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 98

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  ++     L  +D    V T+F+EI  +  RG+ +++  F  F VK++ +R 
Sbjct: 1  MTKSELIAELAAANPHLLSRDVELIVQTIFSEISAALARGDRVELRGFGAFTVKKRDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +D + V  FKA   L++R+
Sbjct: 61 GRNPRTGEMVAVDEKVVPFFKAGKELRERV 90


>gi|313905493|ref|ZP_07838857.1| histone family protein DNA-binding protein [Eubacterium
          cellulosolvens 6]
 gi|313469677|gb|EFR65015.1| histone family protein DNA-binding protein [Eubacterium
          cellulosolvens 6]
          Length = 90

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +IS++  L++K S   +    + + D+  +G+ +++  F TF V ++ +R G
Sbjct: 1  MNKTELIAAISEQTDLTKKQSEEALKAFVDVVADALKKGDKVQLVGFGTFEVSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +TN+ ++I   +   FKA   LK  I
Sbjct: 61 RNPRTNETIEIAASKTPKFKAGKALKDLI 89


>gi|310829349|ref|YP_003961706.1| histone family protein DNA-binding protein [Eubacterium limosum
          KIST612]
 gi|308741083|gb|ADO38743.1| histone family protein DNA-binding protein [Eubacterium limosum
          KIST612]
          Length = 91

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++++ GLS+KDS + +    + + D+   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSELIAAMAEKSGLSKKDSEKALGAFMDTVVDALKDGDKVALVGFGTFDVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T + ++I   +   FKA    K  +
Sbjct: 61 LNPRTKEPIEIAASKAPAFKAGKAFKDEL 89


>gi|295099668|emb|CBK88757.1| bacterial nucleoid protein Hbs [Eubacterium cylindroides T2-87]
          Length = 94

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 50/93 (53%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS T+ + DL   +  E+ LS+K +   + T+F EI ++      + I  F  F + ++ 
Sbjct: 1  MSTTVNKKDLAAKLVAEYDLSKKVAEGCINTVFEEIMNTLKEDGVVDIYGFGKFSLSERA 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +R+G N  T ++++I   + V FKAS  LK  +
Sbjct: 61 ARMGLNPATGEKIEIPASKAVKFKASKSLKDAV 93


>gi|316931463|ref|YP_004106445.1| integration host factor subunit beta [Rhodopseudomonas palustris
          DX-1]
 gi|315599177|gb|ADU41712.1| integration host factor, beta subunit [Rhodopseudomonas palustris
          DX-1]
          Length = 104

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  + +EI D+  RG+ +++  F  F VK + +R 
Sbjct: 1  MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T   V ++ + V  FK    +++R+  D
Sbjct: 61 GRNPRTGAHVPVEQKTVPFFKTGKEMRERLNRD 93


>gi|238018754|ref|ZP_04599180.1| hypothetical protein VEIDISOL_00612 [Veillonella dispar ATCC
          17748]
 gi|237864520|gb|EEP65810.1| hypothetical protein VEIDISOL_00612 [Veillonella dispar ATCC
          17748]
          Length = 99

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  L++KD+ + V  +F+ + +    G  +++  F TF V+++ +R G
Sbjct: 1  MNKTELIASVAQKTELTKKDAEKAVKAVFDTVAEELAAGGKVQVIGFGTFEVRERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN Q  + + I   +   FKA   LK+++
Sbjct: 61 RNPQNGKTITIAASKSPAFKAGKGLKEQV 89


>gi|262197073|ref|YP_003268282.1| histone family protein DNA-binding protein [Haliangium ochraceum
          DSM 14365]
 gi|262080420|gb|ACY16389.1| histone family protein DNA-binding protein [Haliangium ochraceum
          DSM 14365]
          Length = 106

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 50/88 (56%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+SDL++ +S    L +  +   V+ +F  + ++   GE I+I  F +F V+   +  GR
Sbjct: 4  TKSDLIEQLSSAAKLPKAKAELVVSVMFECMAEALQHGERIEIRGFGSFEVRDYKAYEGR 63

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93
          N +T + V++D +R+  FK    L++RI
Sbjct: 64 NPRTGEPVQVDAKRLPFFKIGKELRERI 91


>gi|313892973|ref|ZP_07826550.1| DNA-binding protein HU-beta [Veillonella sp. oral taxon 158 str.
          F0412]
 gi|313442326|gb|EFR60741.1| DNA-binding protein HU-beta [Veillonella sp. oral taxon 158 str.
          F0412]
          Length = 99

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  L++KD+ + V  +F+ + +    G  +++  F TF V+++ +R G
Sbjct: 1  MNKTELIASVAQKTELTKKDAEKAVKAVFDTVAEELAAGGKVQVIGFGTFEVRERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN Q  + + I   +   FKA   LK+++
Sbjct: 61 RNPQNGKTITIAASKSPAFKAGKGLKEQV 89


>gi|219849666|ref|YP_002464099.1| histone family protein DNA-binding protein [Chloroflexus
          aggregans DSM 9485]
 gi|219543925|gb|ACL25663.1| histone family protein DNA-binding protein [Chloroflexus
          aggregans DSM 9485]
          Length = 91

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D +K++++   +S+K++ + + T    I ++  RGE + ++ F TF V+ + +R G
Sbjct: 1  MQKTDFIKAVAERAKVSQKETKQIIDTALEVITEALARGEKVTLTGFGTFEVRSRQAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N QT +++ I   +   F ASS LK+ +
Sbjct: 61 VNPQTREKIHIPATKTPGFSASSTLKEAV 89


>gi|49073542|gb|AAT49327.1| PA5348 [synthetic construct]
          Length = 91

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L  +I+++  L+++ + R +  L +EI  +  R +++ +  F TF  + +G+R G+N
Sbjct: 3  KPELAAAIAEKADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGARTGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT Q VKI     V FK    L+
Sbjct: 63 PQTGQPVKIKASNTVAFKPGKALR 86


>gi|46578812|ref|YP_009620.1| DNA-binding protein HU [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|120603581|ref|YP_967981.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris DP4]
 gi|46448224|gb|AAS94879.1| DNA-binding protein HU [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|120563810|gb|ABM29554.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris DP4]
 gi|311232675|gb|ADP85529.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris RCH1]
          Length = 95

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 51/86 (59%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSKT+T++++V +I ++   +R +    V +L   +  +  +  A+ IS F  F    K 
Sbjct: 1  MSKTLTKAEIVDAIYEKTDRNRAEVKGVVESLLGIMKQAIKKDHALLISGFGKFEAYDKK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86
          +R GRN QT++ + + PR+VVVF+ S
Sbjct: 61 ARKGRNPQTDETITLPPRKVVVFRLS 86


>gi|300312982|ref|YP_003777074.1| integration host factor subunit beta [Herbaspirillum seropedicae
           SmR1]
 gi|300075767|gb|ADJ65166.1| integration host factor beta-subunit (IHF-beta) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 101

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 59/102 (57%), Gaps = 2/102 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+  +++ +  L  KD+   V T+ + + D+   G+ I+I  F +F + ++  R+
Sbjct: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRI 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           GRN ++  +V +  +RV  FK    L++R+ D M G+   +D
Sbjct: 61  GRNPKSGDKVMVPEKRVPHFKPGKELRERV-DAMVGQPIRED 101


>gi|220905203|ref|YP_002480515.1| histone family protein DNA-binding protein [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869502|gb|ACL49837.1| histone family protein DNA-binding protein [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 91

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K+++ E  +   D++  V T F+ +  S + GE I+I  F +F +K+     G
Sbjct: 1  MNKSELIKALADETNIPFDDASMVVNTFFDAMKQSLLAGERIEIRGFGSFKIKEYEGYAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + V +  +R+  F+A   LK+ I
Sbjct: 61 RNPKTGESVTVASKRLPFFRAGKELKEFI 89


>gi|192359929|ref|YP_001980677.1| DNA-binding protein HU [Cellvibrio japonicus Ueda107]
 gi|190686094|gb|ACE83772.1| DNA-binding protein HU [Cellvibrio japonicus Ueda107]
          Length = 91

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D+V +++    LS   +   V+    +I ++  RGE++ +  F +F V ++ +R G
Sbjct: 1  MNKTDIVVAVANTVELSAHKADLVVSAFVEQITNALARGESVALLGFGSFQVSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I   + V FKA   LK  +
Sbjct: 61 RNPQTGEAIQIAASKSVSFKAGKALKDAV 89


>gi|319902105|ref|YP_004161833.1| histone family protein DNA-binding protein [Bacteroides
          helcogenes P 36-108]
 gi|319417136|gb|ADV44247.1| histone family protein DNA-binding protein [Bacteroides
          helcogenes P 36-108]
          Length = 90

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 45/82 (54%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          +    +S++ G + KD++  V +L +++      G  + +  F TF VK+K  R+  N  
Sbjct: 5  EFTSELSRKLGYTLKDTSELVASLLSDMTRQLEEGNIVSVQGFGTFEVKKKAERISVNPN 64

Query: 69 TNQEVKIDPRRVVVFKASSILK 90
          T Q + + P+ V+ +K S++LK
Sbjct: 65 TKQRMLVPPKLVLTYKPSTLLK 86


>gi|1094409|prf||2106156A DNA-binding protein HU
          Length = 90

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 55/87 (63%), Gaps = 2/87 (2%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++  GLS+KD+T+ V  +F+ I ++  +G+ +++  F  F  +++ +R G
Sbjct: 1  MNKTELINAVAETSGLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFE-RERAARKG 59

Query: 65 R-NLQTNQEVKIDPRRVVVFKASSILK 90
          R N QT +E++I   +V  FK    LK
Sbjct: 60 RVNPQTGEEMEIPASKVPAFKPGKALK 86


>gi|24373363|ref|NP_717406.1| HU family DNA-binding protein [Shewanella oneidensis MR-1]
 gi|113970827|ref|YP_734620.1| histone family protein DNA-binding protein [Shewanella sp. MR-4]
 gi|114048052|ref|YP_738602.1| histone family protein DNA-binding protein [Shewanella sp. MR-7]
 gi|120599411|ref|YP_963985.1| histone family protein DNA-binding protein [Shewanella sp.
          W3-18-1]
 gi|126173841|ref|YP_001049990.1| histone family protein DNA-binding protein [Shewanella baltica
          OS155]
 gi|146292593|ref|YP_001183017.1| histone family protein DNA-binding protein [Shewanella
          putrefaciens CN-32]
 gi|153000125|ref|YP_001365806.1| histone family protein DNA-binding protein [Shewanella baltica
          OS185]
 gi|160874747|ref|YP_001554063.1| histone family protein DNA-binding protein [Shewanella baltica
          OS195]
 gi|217973907|ref|YP_002358658.1| histone family protein DNA-binding protein [Shewanella baltica
          OS223]
 gi|304409714|ref|ZP_07391334.1| histone family protein DNA-binding protein [Shewanella baltica
          OS183]
 gi|307304070|ref|ZP_07583823.1| histone family protein DNA-binding protein [Shewanella baltica
          BA175]
 gi|24347626|gb|AAN54850.1|AE015624_3 DNA-binding protein, HU family [Shewanella oneidensis MR-1]
 gi|113885511|gb|ABI39563.1| histone family protein DNA-binding protein [Shewanella sp. MR-4]
 gi|113889494|gb|ABI43545.1| histone family protein DNA-binding protein [Shewanella sp. MR-7]
 gi|120559504|gb|ABM25431.1| histone family protein DNA-binding protein [Shewanella sp.
          W3-18-1]
 gi|125997046|gb|ABN61121.1| histone family protein DNA-binding protein [Shewanella baltica
          OS155]
 gi|145564283|gb|ABP75218.1| histone family protein DNA-binding protein [Shewanella
          putrefaciens CN-32]
 gi|151364743|gb|ABS07743.1| histone family protein DNA-binding protein [Shewanella baltica
          OS185]
 gi|160860269|gb|ABX48803.1| histone family protein DNA-binding protein [Shewanella baltica
          OS195]
 gi|217499042|gb|ACK47235.1| histone family protein DNA-binding protein [Shewanella baltica
          OS223]
 gi|304352232|gb|EFM16630.1| histone family protein DNA-binding protein [Shewanella baltica
          OS183]
 gi|306912968|gb|EFN43391.1| histone family protein DNA-binding protein [Shewanella baltica
          BA175]
 gi|315266989|gb|ADT93842.1| histone family protein DNA-binding protein [Shewanella baltica
          OS678]
 gi|319425895|gb|ADV53969.1| histone family protein DNA-binding protein [Shewanella
          putrefaciens 200]
          Length = 90

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + +    + +    G+ I +  F TF V+++  R G
Sbjct: 1  MNKSELIEKIASGADISKAAAGRALDSFIAAVTEGLKEGDKISLVGFGTFEVRERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+KI   ++  FKA   LK
Sbjct: 61 RNPQTGEEIKIAAAKIPAFKAGKALK 86


>gi|296491988|ref|YP_003662455.1| DNA-binding protein HU-beta [Xenorhabdus nematophila ATCC 19061]
 gi|289176875|emb|CBJ93046.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Xenorhabdus
          nematophila ATCC 19061]
          Length = 90

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  ++++  +S+  +   V  L N + +    G  + ++ F TF VK++ +R G
Sbjct: 1  MNKSELIMKVAEDADISKAKAEAAVNALINSVTEELKAGGTVALTGFGTFQVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I   ++  FKA   LK  +
Sbjct: 61 RNPQTGENIQIAAAKIPGFKAGKGLKDSV 89


>gi|255282032|ref|ZP_05346587.1| DNA-binding protein HU [Bryantella formatexigens DSM 14469]
 gi|255267351|gb|EET60556.1| DNA-binding protein HU [Bryantella formatexigens DSM 14469]
          Length = 91

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+KE  LS+KD+   V    + +     +GE +++  F TF V ++ +R G
Sbjct: 1  MNKTELIAAIAKETELSKKDAELAVKAFTDVVTAELKKGEKVQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + + I   +   FKA   LK
Sbjct: 61 RNPQTGESMSIQASKTPKFKAGKALK 86


>gi|212709049|ref|ZP_03317177.1| hypothetical protein PROVALCAL_00081 [Providencia alcalifaciens
          DSM 30120]
 gi|212688338|gb|EEB47866.1| hypothetical protein PROVALCAL_00081 [Providencia alcalifaciens
          DSM 30120]
          Length = 90

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++   L++  +   +    + I DS   GEA+++  F TF V  + +R G
Sbjct: 1  MNKTELVDAIAESADLTKTQAKAALEATLSAISDSLKSGEAVQLVGFGTFKVSHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I    V  F A   LK  +
Sbjct: 61 RNPQTKAEIQIPATTVPAFSAGKALKDAV 89


>gi|295112033|emb|CBL28783.1| bacterial nucleoid protein Hbs [Synergistetes bacterium SGP1]
          Length = 100

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 57/98 (58%), Gaps = 2/98 (2%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+++L+ +I+++  L +KD    V  +F  I  +  RGE      F  F VK++ +R G
Sbjct: 1   MTKAELIDAIAEKLLLKKKDVVPVVEEVFASIEGALSRGEKCTFVGFGVFEVKERAAREG 60

Query: 65  RNLQ-TNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           RN Q   + VKI  ++V VF+    LK++++  ++G+K
Sbjct: 61  RNPQDPTKVVKIPAKKVPVFRPGKDLKEKVL-AIKGKK 97


>gi|114777720|ref|ZP_01452680.1| DNA-binding protein HU [Mariprofundus ferrooxydans PV-1]
 gi|114551936|gb|EAU54470.1| DNA-binding protein HU [Mariprofundus ferrooxydans PV-1]
          Length = 94

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV+ I+ ++ G++R+++   V T+F+ I D+   G+ +++  F +F  K + +R+
Sbjct: 1  MTKSELVEIIAEQQAGITRREAEVVVNTIFSVIGDALAVGDHVELRGFGSFTTKARQARI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  + +  FK    L++R+
Sbjct: 61 GRNPKTGEAVSVPAKSIPHFKPGKDLRERV 90


>gi|298373677|ref|ZP_06983666.1| DNA-binding protein HU [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274729|gb|EFI16281.1| DNA-binding protein HU [Bacteroidetes oral taxon 274 str. F0058]
          Length = 93

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 50/82 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  +S++ G+SR +  R + +  + + +S  +GE + + +F +F VKQ+ ++  
Sbjct: 1  MTKADIVNEVSRKTGISRDEVLRTLESFMDTVKNSLGKGENVYMRTFGSFIVKQRAAKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  +KI   ++  FK S
Sbjct: 61 RNITKNTTIKIPAHKIPAFKPS 82


>gi|148658098|ref|YP_001278303.1| histone family protein DNA-binding protein [Roseiflexus sp. RS-1]
 gi|148570208|gb|ABQ92353.1| bacterial nucleoid protein Hbs [Roseiflexus sp. RS-1]
          Length = 92

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D +K++++    S+K++   V      I ++  RGE + ++ F TF V+Q+ +R G
Sbjct: 1  MQKTDFIKAVAERANRSQKETKEIVDAALEVITEALKRGEKVTLTGFGTFEVRQRQAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N QT  +++I   +   F ASS LK  + D
Sbjct: 61 VNPQTRSKIQIPATKTPGFSASSTLKNAVKD 91


>gi|332294986|ref|YP_004436909.1| histone family protein DNA-binding protein [Thermodesulfobium
          narugense DSM 14796]
 gi|332178089|gb|AEE13778.1| histone family protein DNA-binding protein [Thermodesulfobium
          narugense DSM 14796]
          Length = 106

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 54/88 (61%), Gaps = 1/88 (1%)

Query: 7  RSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          ++DL+ +++++  G+++KD T  V  +F+ I D+  R E +++  F TF V+++  R GR
Sbjct: 3  KTDLINAVAEKCKGMTKKDCTVVVEAVFDSIKDALKRNEKVQLIGFGTFEVRERKERKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93
          N ++ +E+ I   +   FKA   LK+ +
Sbjct: 63 NPRSKEEIVIPAMKTPGFKAGKALKEAV 90


>gi|303231969|ref|ZP_07318677.1| DNA-binding protein HU 1 [Veillonella atypica ACS-049-V-Sch6]
 gi|302513398|gb|EFL55432.1| DNA-binding protein HU 1 [Veillonella atypica ACS-049-V-Sch6]
          Length = 99

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  L++KD+ + V  +F+ + +    G  +++  F TF V+++ +R G
Sbjct: 1  MNKTELIASVAQKTELTKKDAEKAVKAVFDTVAEELAAGGKVQVIGFGTFEVRERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN Q    + I   +   FKA   LK+++
Sbjct: 61 RNPQNGDTITIKASKSPAFKAGKGLKEQV 89


>gi|160889558|ref|ZP_02070561.1| hypothetical protein BACUNI_01982 [Bacteroides uniformis ATCC
          8492]
 gi|270296682|ref|ZP_06202881.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317480050|ref|ZP_07939162.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36]
 gi|156861075|gb|EDO54506.1| hypothetical protein BACUNI_01982 [Bacteroides uniformis ATCC
          8492]
 gi|270272669|gb|EFA18532.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316903792|gb|EFV25634.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36]
          Length = 90

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 43/82 (52%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          +    +S+  G + KD++  V +L  ++      G  I I  F TF VK+K  R+  N  
Sbjct: 5  EFTSELSRRLGYTLKDTSELVASLLADMTRQLEEGNIISIQGFGTFEVKKKAERISVNPT 64

Query: 69 TNQEVKIDPRRVVVFKASSILK 90
          T Q + + P+ V+ +K S++LK
Sbjct: 65 TKQRMLVPPKLVLTYKPSTLLK 86


>gi|114798899|ref|YP_758925.1| integration host factor subunit beta [Hyphomonas neptunium ATCC
          15444]
 gi|114739073|gb|ABI77198.1| integration host factor, beta subunit [Hyphomonas neptunium ATCC
          15444]
          Length = 99

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S L++ ++ E   L  +D  + V  +  EI D+  RG+ +++  F  F V+++ +R 
Sbjct: 1  MLKSQLIEKLAAENAHLRHEDVEKVVNVILGEIGDALTRGDRVELRGFGAFSVRKRDARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + VK+  + V  FKA   L+ R+
Sbjct: 61 GRNPRTGEPVKVPAKAVPFFKAGKELRARV 90


>gi|325521368|gb|EGD00211.1| histone family protein DNA-binding protein [Burkholderia sp.
          TJI49]
          Length = 92

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++   G+S+ D+++ V  + + I D+  RGE++++  F  F   Q+ +R G
Sbjct: 1  MNKQELIDAVATGAGVSKTDASKTVQAVLDAITDAVSRGESVQLIGFGAFSQGQRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T  E+ I     V F A    K  +
Sbjct: 61 RNPTTGAEIAIPAANTVKFTAGKAFKDGV 89


>gi|294146438|ref|YP_003559104.1| histone-like DNA-binding protein [Sphingobium japonicum UT26S]
 gi|292676855|dbj|BAI98372.1| histone-like DNA-binding protein [Sphingobium japonicum UT26S]
          Length = 91

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  ++L ++++ + GL++ D+ ++V  +F+ I  +A +GE + ++ F  F VK + +R G
Sbjct: 1  MNNTELAEALAADHGLTKADARKYVDGVFSAIAGAAAKGEEVSLNGFGKFKVKDQPAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T   ++I   + + F  +  +K ++
Sbjct: 61 RNPSTGAVIQIAASKKLTFTPAKAVKDQL 89


>gi|291548185|emb|CBL21293.1| Bacterial nucleoid DNA-binding protein [Ruminococcus sp. SR1/5]
          Length = 92

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++K+  LS+KD    + +  + + D   +GE I++  F TF V  + +R G
Sbjct: 1  MNKTELVAAMAKDTNLSKKDVEAVLKSFIDVVTDELKKGEKIQLVGFGTFEVSTRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + + I+  +   FKA   LK
Sbjct: 61 RNPQTGETMTIEASKSPKFKAGKALK 86


>gi|325922711|ref|ZP_08184451.1| bacterial nucleoid DNA-binding protein [Xanthomonas gardneri ATCC
          19865]
 gi|325546828|gb|EGD17942.1| bacterial nucleoid DNA-binding protein [Xanthomonas gardneri ATCC
          19865]
          Length = 90

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++    +S+ ++ R V  + +EI  +  +GEA+ +  F TF V+++  R G
Sbjct: 1  MNKTELIDGVAAAADISKAEAGRAVDAVVSEITKALKKGEAVTLVGFGTFQVRERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   +KI   +   FKA   LK  +
Sbjct: 61 RNPKTGDSIKIAASKNPAFKAGKALKDAV 89


>gi|124267432|ref|YP_001021436.1| putative integration host factor subunit beta (ihf-beta) protein
          [Methylibium petroleiphilum PM1]
 gi|124260207|gb|ABM95201.1| putative integration host factor beta-subunit (ihf-beta) protein
          [Methylibium petroleiphilum PM1]
          Length = 111

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDLV  + + F  L+ +D+   V T+ + + D+  RG  I+I  F +F + ++  R+
Sbjct: 1  MTRSDLVALLGERFSQLTHRDTEFAVKTILDAMSDALARGHRIEIRGFGSFSINRRPPRM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V I  + V  FK    L++ +
Sbjct: 61 GRNPRSGEQVVIPEKLVPHFKPGKALREAV 90


>gi|15600541|ref|NP_254035.1| DNA-binding protein [Pseudomonas aeruginosa PAO1]
 gi|107104450|ref|ZP_01368368.1| hypothetical protein PaerPA_01005527 [Pseudomonas aeruginosa
          PACS2]
 gi|116053495|ref|YP_793822.1| HU family DNA-binding protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894451|ref|YP_002443321.1| putative DNA-binding protein [Pseudomonas aeruginosa LESB58]
 gi|254237960|ref|ZP_04931283.1| hypothetical protein PACG_04070 [Pseudomonas aeruginosa C3719]
 gi|254243767|ref|ZP_04937089.1| hypothetical protein PA2G_04593 [Pseudomonas aeruginosa 2192]
 gi|296392208|ref|ZP_06881683.1| putative DNA-binding protein [Pseudomonas aeruginosa PAb1]
 gi|313106776|ref|ZP_07792992.1| putative DNA-binding protein [Pseudomonas aeruginosa 39016]
 gi|14194645|sp|Q9HTL0|DBHA_PSEAE RecName: Full=DNA-binding protein HU-alpha
 gi|9951668|gb|AAG08733.1|AE004947_3 probable DNA-binding protein [Pseudomonas aeruginosa PAO1]
 gi|115588716|gb|ABJ14731.1| putative DNA-binding protein HU family [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|126169891|gb|EAZ55402.1| hypothetical protein PACG_04070 [Pseudomonas aeruginosa C3719]
 gi|126197145|gb|EAZ61208.1| hypothetical protein PA2G_04593 [Pseudomonas aeruginosa 2192]
 gi|218774680|emb|CAW30497.1| probable DNA-binding protein [Pseudomonas aeruginosa LESB58]
 gi|310879494|gb|EFQ38088.1| putative DNA-binding protein [Pseudomonas aeruginosa 39016]
          Length = 90

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L  +I+++  L+++ + R +  L +EI  +  R +++ +  F TF  + +G+R G+N
Sbjct: 3  KPELAAAIAEKADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGARTGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT Q VKI     V FK    L+
Sbjct: 63 PQTGQPVKIKASNTVAFKPGKALR 86


>gi|317402986|gb|EFV83525.1| integration host factor beta-subunit [Achromobacter xylosoxidans
           C54]
          Length = 119

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 65/110 (59%), Gaps = 6/110 (5%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+ +++  +  L+ +D+   V T+ + +  +   G+ I+I  F +F + Q+  R+
Sbjct: 1   MTKSELIAALAARYPQLAARDTDYAVKTVLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           GRN ++ ++V +  ++V  FKA   L++R+  D+ G   N +D  S SGS
Sbjct: 61  GRNPKSGEQVLVPGKQVPHFKAGKELRERV--DLVG--GNDEDAQS-SGS 105


>gi|187777484|ref|ZP_02993957.1| hypothetical protein CLOSPO_01052 [Clostridium sporogenes ATCC
           15579]
 gi|187774412|gb|EDU38214.1| hypothetical protein CLOSPO_01052 [Clostridium sporogenes ATCC
           15579]
          Length = 109

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 53/89 (59%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +S+L+ S++++  L++KD+   + +    + ++   GE +++  F TF  +++  RVG
Sbjct: 18  VNKSELITSMAEKSKLTKKDAEAALKSFIESVEEALEGGEKVQLVGFGTFETRERAERVG 77

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T +E+ I      VFKA   LK+++
Sbjct: 78  RNPRTKEEITIPASIAPVFKAGKELKEKV 106


>gi|159474730|ref|XP_001695478.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158275961|gb|EDP01736.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 87

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          ++ LV++I+ E GL++  + +   +L   I D+ + G+ + I  F TF V+++ +R GRN
Sbjct: 1  KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 60

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
            T   ++I   +  VFKAS  LK  +
Sbjct: 61 PSTGAVLQIAASKAPVFKASVGLKDAV 87


>gi|119946633|ref|YP_944313.1| integration host factor, beta subunit [Psychromonas ingrahamii
          37]
 gi|166975884|sp|A1SYZ9|IHFB_PSYIN RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|119865237|gb|ABM04714.1| integration host factor, beta subunit [Psychromonas ingrahamii
          37]
          Length = 95

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+SDL++ + SK F LS K+    V      + +S  +GE I++  F +F +  +  RV
Sbjct: 1  MTKSDLIERLTSKHFQLSVKEVEDSVKETLTLMANSLAQGERIEVRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V++D + V  FK    L++R+
Sbjct: 61 GRNPKTGDRVELDGKYVPHFKPGKALRERV 90


>gi|255016156|ref|ZP_05288282.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_7]
 gi|256842574|ref|ZP_05548076.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
 gi|256735930|gb|EEU49262.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
          Length = 98

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSR 62
          ++ R +LV+S+ +E GL  K+  R V      +    +R GE+I +  F +F   Q+  R
Sbjct: 7  SMNRGELVQSLVEETGLP-KNVVRAVVNALPTVVAKGIREGESISMKGFGSFVPWQQSER 65

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          + RN +T +EV I PR  V FKA S L K +
Sbjct: 66 LARNPKTGEEVMITPRVSVKFKAGSDLLKEL 96


>gi|317485299|ref|ZP_07944179.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
 gi|316923425|gb|EFV44631.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
          Length = 100

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 51/86 (59%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T++D+V++I ++   +R D    V  L   +  +  + +A+ +S F  F    K 
Sbjct: 1  MNRALTKADIVEAIYEKTDRNRADVKNTVEILLGLMKQAIKKDDALLVSGFGKFEAYDKE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86
          +R GRN QT++ + + PR+VVVF+ S
Sbjct: 61 ARKGRNPQTDETITLPPRKVVVFRLS 86


>gi|319941268|ref|ZP_08015599.1| histone family protein DNA-binding protein [Sutterella
          wadsworthensis 3_1_45B]
 gi|319805189|gb|EFW02012.1| histone family protein DNA-binding protein [Sutterella
          wadsworthensis 3_1_45B]
          Length = 91

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L  +++++ GLS+ D+ + +   F  + +   +G+A++I  F  F V    +R G
Sbjct: 1  MNKTELTAAVAQKAGLSKSDAAKVLGAFFETVSEELSKGQAVQIIGFGNFEVADYKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I   +   F A S LKK +
Sbjct: 61 RNPQTGAVLEIPAGKRPKFTAGSALKKAV 89


>gi|150395249|ref|YP_001325716.1| integration host factor subunit beta [Sinorhizobium medicae WSM419]
 gi|166975894|sp|A6U5F1|IHFB_SINMW RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|150026764|gb|ABR58881.1| integration host factor, beta subunit [Sinorhizobium medicae
           WSM419]
          Length = 103

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 5   ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV+ ++ +   L  +D    V  + +EI D+   G  +++  F  F VK + SR 
Sbjct: 1   MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN +T   V ++ + V  FK    L++R+   M G    +DD
Sbjct: 61  GRNPRTGDSVFVEEKWVPFFKTGKELRERLNPGMNGNDNGEDD 103


>gi|193215171|ref|YP_001996370.1| histone family protein DNA-binding protein [Chloroherpeton
          thalassium ATCC 35110]
 gi|193088648|gb|ACF13923.1| histone family protein DNA-binding protein [Chloroherpeton
          thalassium ATCC 35110]
          Length = 100

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 53/94 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+   GL+++++   V      + ++   GE I+I  F T++V++K  R+ 
Sbjct: 1  MTKADIVSIIASRTGLTKQETETVVDGFIEAVIEALKAGERIEIRGFGTYNVRKKNKRLA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T ++V ID + V  FK S   K  + D  +
Sbjct: 61 RNPRTGEKVVIDEKYVPTFKISKEFKSAVSDSYK 94


>gi|193213517|ref|YP_001999470.1| histone family protein DNA-binding protein [Chlorobaculum parvum
          NCIB 8327]
 gi|193086994|gb|ACF12270.1| histone family protein DNA-binding protein [Chlorobaculum parvum
          NCIB 8327]
          Length = 91

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++++LV+ I+ E G+++ ++ R V    N +  +   G+ + +  F TF    +  R G
Sbjct: 1  MSKAELVEQIAAETGMTKAEAERAVNAFINVVTSTLKGGDDVTLVGFGTFTTGDRAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I  ++VV FK    LK  I
Sbjct: 61 RNPQTGETITIAAKKVVKFKPGKALKDEI 89


>gi|77360230|ref|YP_339805.1| DNA-binding protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76875141|emb|CAI86362.1| DNA-binding protein HU-alpha (HU-2), likely to play a role in DNA
          replication and in rpo translation [Pseudoalteromonas
          haloplanktis TAC125]
          Length = 89

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV +++++  L++KD+   +T+L   I  S   G+ ++I+ F TF +    +R G
Sbjct: 1  MNKAQLVTAMAQKSELTKKDAQAALTSLQKVITKSLAEGDQVQINGFGTFALSYYPARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT   ++I+     VFKAS  LK
Sbjct: 61 RNPQTGASIEIEGANKAVFKASKALK 86


>gi|170718718|ref|YP_001783908.1| histone family protein DNA-binding protein [Haemophilus somnus
          2336]
 gi|168826847|gb|ACA32218.1| histone family protein DNA-binding protein [Haemophilus somnus
          2336]
          Length = 91

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+    L++K +   +      I  S   GEA+++  F TF V ++ +R G
Sbjct: 1  MNKTDLIDAIAGAAELNKKQAKAALEATLGAIAGSLKAGEAVQLIGFGTFKVNERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT  E++I   +V  F A   LK
Sbjct: 61 RNPQTGAEIQIAASKVPAFVAGKALK 86


>gi|240948534|ref|ZP_04752907.1| DNA-binding protein HU [Actinobacillus minor NM305]
 gi|257464750|ref|ZP_05629121.1| DNA-binding protein HU [Actinobacillus minor 202]
 gi|240297042|gb|EER47613.1| DNA-binding protein HU [Actinobacillus minor NM305]
 gi|257450410|gb|EEV24453.1| DNA-binding protein HU [Actinobacillus minor 202]
          Length = 90

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+ +  LS+KD+   +      + +S   G+ +++  F TF V ++ +R G
Sbjct: 1  MNKSELIDAIAAKAELSKKDAKAALEATLEAVSESLKAGDTVQLIGFGTFKVNERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E+KI   ++  F A   LK
Sbjct: 61 RNPRTGEEIKIAAAKIPAFVAGKALK 86


>gi|167855104|ref|ZP_02477876.1| hypothetical protein HPS_06734 [Haemophilus parasuis 29755]
 gi|219870700|ref|YP_002475075.1| integration host factor subunit beta [Haemophilus parasuis
          SH0165]
 gi|254803535|sp|B8F475|IHFB_HAEPS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|167853739|gb|EDS24981.1| hypothetical protein HPS_06734 [Haemophilus parasuis 29755]
 gi|219690904|gb|ACL32127.1| integration host factor, beta subunit/bacterial nucleoid
          DNA-binding protein [Haemophilus parasuis SH0165]
          Length = 93

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ ++  ++  LS K     V  +  +I  S  +GE I++  F +F +  +  RV
Sbjct: 1  MTKSELIANLVAQYPSLSVKSVDESVKEILEQIMGSLEQGERIEVRGFGSFSLHYRQPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + VK+D + V  FKA   LK+R+
Sbjct: 61 GRNPKTGESVKLDAKYVPHFKAGKELKERV 90


>gi|78065633|ref|YP_368402.1| integration host factor subunit beta [Burkholderia sp. 383]
 gi|206561284|ref|YP_002232049.1| integration host factor subunit beta [Burkholderia cenocepacia
           J2315]
 gi|123770067|sp|Q39IF8|IHFB_BURS3 RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|226709775|sp|B4EB39|IHFB_BURCJ RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|77966378|gb|ABB07758.1| Integration host factor, beta subunit [Burkholderia sp. 383]
 gi|198037326|emb|CAR53251.1| integration host factor beta-subunit [Burkholderia cenocepacia
           J2315]
 gi|325520509|gb|EGC99605.1| integration host factor subunit beta [Burkholderia sp. TJI49]
          Length = 107

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 2/103 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + D+  +G  I+I  F +F + ++ +RV
Sbjct: 1   MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALAKGHRIEIRGFGSFGLNRRPARV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN ++ ++V++  + V  FK    L++R+ D   G     DD
Sbjct: 61  GRNPKSGEKVQVPEKFVPHFKPGKELRERV-DGRAGEPLKADD 102


>gi|262196426|ref|YP_003267635.1| histone family protein DNA-binding protein [Haliangium ochraceum
          DSM 14365]
 gi|262079773|gb|ACY15742.1| histone family protein DNA-binding protein [Haliangium ochraceum
          DSM 14365]
          Length = 168

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L++ +S+   L    + + V  +F+ +  +   G+ I+I  F +F V+Q  +  G
Sbjct: 1  MTKSELIEQVSELLKLPNGKAEQIVNCIFDSMVSALQDGDGIEIRGFGSFTVRQYKAYEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + V + P+R+  FK    L++R+
Sbjct: 61 RNPRTGETVHVAPKRLPFFKVGKDLRERV 89


>gi|320354725|ref|YP_004196064.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
 gi|320123227|gb|ADW18773.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
          Length = 92

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 50/92 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL++SI+    +S+  + R +  L + +  +   G+ + +  F +F V  +  R G
Sbjct: 1  MNKSDLIESIAHSAQISKIAAERGLNGLLSTLSAAITEGKRVTLVGFGSFSVVDRAPRKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T + V I PRRVV F+    L  +I+ D
Sbjct: 61 RNPKTGETVPIPPRRVVKFRPGKELAGKILCD 92


>gi|317051936|ref|YP_004113052.1| histone family protein DNA-binding protein [Desulfurispirillum
          indicum S5]
 gi|316947020|gb|ADU66496.1| histone family protein DNA-binding protein [Desulfurispirillum
          indicum S5]
          Length = 93

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T++DLV+ I  K   +++K +   V  LF  I D+   G+ +++  F +F  +++G R 
Sbjct: 1  MTKADLVERICEKTDSVNKKQAEAVVNGLFECIIDALEEGDKVELRGFGSFKTRERGPRE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  +V +  +RV  FK    L++R+
Sbjct: 61 GRNPKTGDKVSVPSKRVPYFKPGKELRERV 90


>gi|146280834|ref|YP_001170987.1| HU family DNA-binding protein [Pseudomonas stutzeri A1501]
 gi|145569039|gb|ABP78145.1| DNA-binding protein, HU family [Pseudomonas stutzeri A1501]
          Length = 105

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 48/87 (55%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
           + +L  +I+++  LS+  + R +  + +EI ++  R +++ +  F TF  + +G+R G+N
Sbjct: 18  KPELAAAIAEKADLSKDQANRVLNAVLDEITNALNRKDSVTLVGFGTFVQRHRGARTGKN 77

Query: 67  LQTNQEVKIDPRRVVVFKASSILKKRI 93
            QT Q V I     V FK   +LK  +
Sbjct: 78  PQTGQPVTIKASNTVAFKPGKMLKDAV 104


>gi|85859597|ref|YP_461799.1| DNA-binding protein HU [Syntrophus aciditrophicus SB]
 gi|85722688|gb|ABC77631.1| DNA-binding protein HU [Syntrophus aciditrophicus SB]
          Length = 93

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 47/85 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++++  +  +  +SRK+    V + F  I     +G  + IS F  + V+ K  R G
Sbjct: 3  LTKNEMMTMLYNQLNISRKECVDIVESFFEIIKSELEKGNPVMISGFGKWTVRPKRERKG 62

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN QT +++ I  R+VV FKAS  L
Sbjct: 63 RNPQTGEDLTITARKVVTFKASPNL 87


>gi|15616751|ref|NP_239963.1| integration host factor alpha-subunit [Buchnera aphidicola str.
          APS (Acyrthosiphon pisum)]
 gi|219681506|ref|YP_002467891.1| integration host factor alpha-subunit [Buchnera aphidicola str.
          5A (Acyrthosiphon pisum)]
 gi|219682062|ref|YP_002468446.1| integration host factor alpha-subunit [Buchnera aphidicola str.
          Tuc7 (Acyrthosiphon pisum)]
 gi|257471187|ref|ZP_05635186.1| integration host factor subunit alpha [Buchnera aphidicola str.
          LSR1 (Acyrthosiphon pisum)]
 gi|11132925|sp|P57231|IHFA_BUCAI RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|254803511|sp|B8D8T2|IHFA_BUCA5 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|254803512|sp|B8D736|IHFA_BUCAT RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|25294341|pir||A84945 integration host factor alpha-subunit [imported] - Buchnera sp.
          (strain APS)
 gi|10038814|dbj|BAB12849.1| integration host factor alpha-subunit [Buchnera aphidicola str.
          APS (Acyrthosiphon pisum)]
 gi|219621795|gb|ACL29951.1| integration host factor alpha-subunit [Buchnera aphidicola str.
          Tuc7 (Acyrthosiphon pisum)]
 gi|219624349|gb|ACL30504.1| integration host factor alpha-subunit [Buchnera aphidicola str.
          5A (Acyrthosiphon pisum)]
 gi|311085875|gb|ADP65957.1| integration host factor subunit alpha [Buchnera aphidicola str.
          LL01 (Acyrthosiphon pisum)]
 gi|311087027|gb|ADP67107.1| integration host factor subunit alpha [Buchnera aphidicola str.
          JF99 (Acyrthosiphon pisum)]
 gi|311087593|gb|ADP67672.1| integration host factor subunit alpha [Buchnera aphidicola str.
          JF98 (Acyrthosiphon pisum)]
          Length = 102

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 58/93 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++ + +++ ++  L++K+S  FV   F E+  S  +GEA+K+S F  F +K+K +R G
Sbjct: 3  LTKAAISENLFEKLQLTKKESKEFVEFFFEEVRKSLEKGEAVKLSGFGNFQIKKKKARPG 62

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          RN +T +   I  RRVV FKA   LK +I + +
Sbjct: 63 RNPRTGEIFLITARRVVTFKAGQKLKNKINNYL 95


>gi|326385372|ref|ZP_08207017.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens
          DSM 19370]
 gi|326210178|gb|EGD60950.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens
          DSM 19370]
          Length = 93

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 49/90 (54%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+  ++L ++++   GL++  +   V  +FN I ++A +GE I +++F  F VK   +R 
Sbjct: 2  TMNTAELAEAVASSQGLTKAAARELVDAVFNAIVEAATKGEEISLNAFGKFKVKDTPARE 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN  T   + I   R + F  +  +K +I
Sbjct: 62 GRNPSTGAVIAIAASRKLTFAPAKAVKDKI 91


>gi|309792618|ref|ZP_07687079.1| histone family protein DNA-binding protein [Oscillochloris
          trichoides DG6]
 gi|308225340|gb|EFO79107.1| histone family protein DNA-binding protein [Oscillochloris
          trichoides DG6]
          Length = 91

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 52/86 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D +K+++++ G+S+K++   V +  + I ++  RGE + ++ F TF V+ + +R G
Sbjct: 1  MQKTDFIKAVAEKAGVSQKETKLVVDSALDVITEALARGEKVTLTGFGTFEVRSRRAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N QT  ++ I   +   F ASS LK
Sbjct: 61 VNPQTRDKIHIPETKTPGFSASSTLK 86


>gi|313207044|ref|YP_004046221.1| histone family protein DNA-binding protein [Riemerella
          anatipestifer DSM 15868]
 gi|312446360|gb|ADQ82715.1| histone family protein DNA-binding protein [Riemerella
          anatipestifer DSM 15868]
 gi|315022562|gb|EFT35589.1| DNA-binding protein HU [Riemerella anatipestifer RA-YM]
 gi|325335519|gb|ADZ11793.1| Bacterial nucleoid DNA-binding protein [Riemerella anatipestifer
          RA-GD]
          Length = 97

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV +IS + G+ + D+ + +     EI  S   G  + +  F +F +K + ++ G
Sbjct: 1  MTKAELVNTISNKLGIEKNDTQKVIEAFMQEIRGSLYEGNNVYLRGFGSFIIKTRAAKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN+  N  ++I    +  FK S    +R+
Sbjct: 61 RNISKNTAIEIPAHNIPAFKPSKSFAERV 89


>gi|297538181|ref|YP_003673950.1| histone family protein DNA-binding protein [Methylotenera sp.
          301]
 gi|297257528|gb|ADI29373.1| histone family protein DNA-binding protein [Methylotenera sp.
          301]
          Length = 90

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+   GL++ D+ R +      I  +   G+A+ +  F TF V Q+ +R G
Sbjct: 1  MNKSELIDAIAASAGLTKADAGRAIDATTAAITAALKNGDAVTLVGFGTFKVTQRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T  E+KI  R+   F A   LK
Sbjct: 61 RNPRTGAELKIAARKAPAFTAGKTLK 86


>gi|269467813|gb|EEZ79565.1| histone family protein [uncultured SUP05 cluster bacterium]
          Length = 90

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    LS+ D+ R +      I  +   G+ ++I+ F +F V+ + +R G
Sbjct: 1  MNKSELIDAIASAANLSKADAGRALNATTGAITSALSGGDGVQITGFGSFVVRARAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I   +   FKA   LK+ +
Sbjct: 61 RNPQTGATIQIKASKNAAFKAGKALKEAV 89


>gi|107022126|ref|YP_620453.1| integration host factor subunit beta [Burkholderia cenocepacia AU
           1054]
 gi|116689071|ref|YP_834694.1| integration host factor subunit beta [Burkholderia cenocepacia
           HI2424]
 gi|170732359|ref|YP_001764306.1| integration host factor subunit beta [Burkholderia cenocepacia
           MC0-3]
 gi|123072317|sp|Q1BY25|IHFB_BURCA RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|226709773|sp|B1JXS2|IHFB_BURCC RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|226709774|sp|A0K5M4|IHFB_BURCH RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|105892315|gb|ABF75480.1| integration host factor, beta subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647160|gb|ABK07801.1| integration host factor, beta subunit [Burkholderia cenocepacia
           HI2424]
 gi|169815601|gb|ACA90184.1| integration host factor, beta subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 107

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 2/103 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + D+  +G  I+I  F +F + ++ +RV
Sbjct: 1   MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALAKGHRIEIRGFGSFGLNRRPARV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN ++ ++V++  + V  FK    L++R+ D   G     DD
Sbjct: 61  GRNPKSGEKVQVPEKFVPHFKPGKELRERV-DGRAGEPLKADD 102


>gi|299139694|ref|ZP_07032867.1| histone family protein DNA-binding protein [Acidobacterium sp.
          MP5ACTX8]
 gi|298598318|gb|EFI54483.1| histone family protein DNA-binding protein [Acidobacterium sp.
          MP5ACTX8]
          Length = 117

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  +     L+R+D    V TLF+ I  +   G+ +++  F +F  +Q+  R G
Sbjct: 1  MTKAELVDHVIALGDLTRRDGEVIVDTLFDSIIGAVKSGDKVEVRGFGSFRTRQRKPRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   V +  +RV  FK S  L+  I
Sbjct: 61 RNPKTGASVSVPAKRVPYFKPSKDLRDLI 89


>gi|1706310|sp|P52681|DBHB_SERMA RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1;
          AltName: Full=NS1
 gi|802008|gb|AAA65988.1| HU beta [Serratia marcescens]
 gi|1586263|prf||2203354B heterodimeric HU protein
          Length = 90

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + DS   G+ + +  F +F V+++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDAVIASVTDSLKAGDDVALVGFGSFTVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI  R+V  F+A   LK  +
Sbjct: 61 RNPQTGKEIKIAARKVPAFRAGKALKDAV 89


>gi|288817831|ref|YP_003432178.1| histone-like DNA-binding protein HU [Hydrogenobacter thermophilus
          TK-6]
 gi|288787230|dbj|BAI68977.1| histone-like DNA-binding protein HU [Hydrogenobacter thermophilus
          TK-6]
 gi|308751429|gb|ADO44912.1| histone family protein DNA-binding protein [Hydrogenobacter
          thermophilus TK-6]
          Length = 90

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV +++K  G+++K +   + +  + I  S  +GE + I  F  F V+++ +R G
Sbjct: 1  MTKAELVSAVAKGAGITKKQADAALKSAISAIAGSLKKGERVAIPGFGIFTVRKRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   + I  R+VV F+ +  L++ I
Sbjct: 61 RNPRTGAVINIPARKVVTFRPAKDLRESI 89


>gi|87199383|ref|YP_496640.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans
          DSM 12444]
 gi|87135064|gb|ABD25806.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans
          DSM 12444]
          Length = 90

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ S++   GLS+ D+T+ V  +F  I  +  +G+ +++  F TF V ++ +  G
Sbjct: 1  MNKNDLIGSVADASGLSKGDATKAVEAVFESISGALAKGDEVRLVGFGTFSVAKRKASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I       FKA   LK  +
Sbjct: 61 RNPRTGEPMSIKASAQPKFKAGKGLKDAV 89


>gi|325111062|ref|YP_004272130.1| histone family protein DNA-binding protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324971330|gb|ADY62108.1| histone family protein DNA-binding protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 136

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 56/99 (56%), Gaps = 2/99 (2%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA--IKISSFATFHVKQKGSR 62
           +T+ ++VK+IS E GL++  +   V   F  I ++ V      I++ +F  F VK++ +R
Sbjct: 1   MTKKEIVKAISDELGLTQLQTKAIVQRTFESIIETLVHDPKHRIELRNFGVFEVKKRAAR 60

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
             RN +TN+ V ++ + VV FK    +++++   M+  +
Sbjct: 61  KARNPRTNERVDVEEKYVVTFKPGKEMEEKVRQLMKAEE 99


>gi|152995752|ref|YP_001340587.1| histone family protein DNA-binding protein [Marinomonas sp.
          MWYL1]
 gi|150836676|gb|ABR70652.1| histone family protein DNA-binding protein [Marinomonas sp.
          MWYL1]
          Length = 90

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    LS+  ++  +      I  +  +G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAASADLSKASASNALDATLKAIEAALAKGDQVTLVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FKA   LK  +
Sbjct: 61 RNPQTGEEIQIKAAKVPGFKAGKGLKDAV 89


>gi|322381185|ref|ZP_08055188.1| non-specific DNA-binding protein Hbsu/signal recognition
          particle-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
 gi|321154761|gb|EFX47032.1| non-specific DNA-binding protein Hbsu/signal recognition
          particle-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
          Length = 90

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+ +I+ + GL++KD    +     E+ ++   G+ +++  F TF  + +  R G
Sbjct: 1  MNKVDLINNIATKSGLTKKDVETVLNGFLGEVTEALSSGDKVQLIGFGTFETRVRSERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I   +V  FKA + LK+ +
Sbjct: 61 RNPQTGKTITIPESKVPAFKAGNKLKEAV 89


>gi|21673001|ref|NP_661066.1| DNA-binding protein HU-beta [Chlorobium tepidum TLS]
 gi|21646065|gb|AAM71408.1| DNA-binding protein HU-beta [Chlorobium tepidum TLS]
          Length = 91

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++++L + I+++ GL++ D+ R V    N +  +   G+ + +  F TF    +  R G
Sbjct: 1  MSKAELAEKIAEQTGLTKADAERAVNAFINVVTSTLKSGDDVTLVGFGTFTTGDRAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I  ++VV FK    LK+ +
Sbjct: 61 RNPQTGKTITIAAKKVVKFKPGKALKEEV 89


>gi|327399206|ref|YP_004340075.1| histone family protein DNA-binding protein [Hippea maritima DSM
          10411]
 gi|327181835|gb|AEA34016.1| histone family protein DNA-binding protein [Hippea maritima DSM
          10411]
          Length = 91

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L++ ++++ G ++  + + +      I D+   GE +  + F TF+V ++ +R+G
Sbjct: 1  MTKAELIEKVAEKTGATKSQTKKVIDAALETIMDAVAAGEKVGFAGFGTFYVSKRSARMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T ++++I+   +  FK   I K+++
Sbjct: 61 RNPRTGEKLQIEAFNLPSFKCGRIFKEKV 89


>gi|110834074|ref|YP_692933.1| DNA-binding protein HU [Alcanivorax borkumensis SK2]
 gi|110647185|emb|CAL16661.1| DNA-binding protein HU [Alcanivorax borkumensis SK2]
          Length = 90

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    +S+ D+ R + +    +  +   G+++ +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAASADISKADAGRALDSTLEAVTGALKNGDSVSLVGFGTFAVKRREARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT Q +KI    V  FKA   LK  +
Sbjct: 61 RNPQTGQTIKIAAANVPGFKAGKALKDAV 89


>gi|283851059|ref|ZP_06368343.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          FW1012B]
 gi|283573455|gb|EFC21431.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          FW1012B]
          Length = 90

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 2/90 (2%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA-IKISSFATFHVKQKGSRV 63
          +T++DLV  I+++ GL++ ++ R +   F E  ++ + GE  + ++ F TF V ++ +R 
Sbjct: 1  MTKADLVGKIAEKTGLTKANAERALNA-FIEAIEATLVGEGKLTLTGFGTFMVDERKART 59

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  E+ I   +VV F+   +LK  I
Sbjct: 60 GRNPRTGTEINIPASKVVKFRPGKLLKDAI 89


>gi|218885662|ref|YP_002434983.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris str. 'Miyazaki F']
 gi|218756616|gb|ACL07515.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris str. 'Miyazaki F']
          Length = 91

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K++S+E  +  +++   V T  + + ++   G+ ++I  F +F VK  G   G
Sbjct: 1  MNKSELIKTLSEETNIPIEEAAMVVNTFVDNMKEALADGDRVEIRGFGSFKVKDYGGYSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T   V + P+R+  F+A   LK+ + D
Sbjct: 61 RNPKTGDMVVVQPKRLPFFRAGKELKEFLND 91


>gi|254498715|ref|ZP_05111431.1| integration host factor (IHF) alpha subunit [Legionella
          drancourtii LLAP12]
 gi|254352043|gb|EET10862.1| integration host factor (IHF) alpha subunit [Legionella
          drancourtii LLAP12]
          Length = 97

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 48/90 (53%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           ++++ + +++  E  LS+  S   V   F  +  +   G  +K+S F  F ++ K  R 
Sbjct: 3  ALSKAIMAETLCDELKLSKPASKEMVENFFEVLRHALEHGHHVKLSGFGNFTLRDKPQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ +  RRVV FK+   LK +I
Sbjct: 63 GRNPKTGEEIPVVARRVVTFKSGLKLKTKI 92


>gi|125975139|ref|YP_001039049.1| nucleoid protein Hbs [Clostridium thermocellum ATCC 27405]
 gi|256003205|ref|ZP_05428197.1| histone family protein DNA-binding protein [Clostridium
          thermocellum DSM 2360]
 gi|281418440|ref|ZP_06249459.1| histone family protein DNA-binding protein [Clostridium
          thermocellum JW20]
 gi|125715364|gb|ABN53856.1| bacterial nucleoid protein Hbs [Clostridium thermocellum ATCC
          27405]
 gi|255992896|gb|EEU02986.1| histone family protein DNA-binding protein [Clostridium
          thermocellum DSM 2360]
 gi|281407524|gb|EFB37783.1| histone family protein DNA-binding protein [Clostridium
          thermocellum JW20]
 gi|316939306|gb|ADU73340.1| histone family protein DNA-binding protein [Clostridium
          thermocellum DSM 1313]
          Length = 91

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  LS+KD+ + +      + ++  +G+ I++  F +F V+++  R G
Sbjct: 1  MNKTELIASMAEKSQLSKKDAEKALNAFIESVEEALAKGDKIQLVGFGSFEVRERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +  +FK    LK+ +
Sbjct: 61 RNPQTKEEIVIPATKTPIFKVGKGLKELV 89


>gi|254507806|ref|ZP_05119937.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus 16]
 gi|219549331|gb|EED26325.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus 16]
          Length = 90

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I++   LS+  + R +  L   + D+   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVEKIAENADLSKASAGRALDALIEAVSDTLQSGDQVALVGFGTFSVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E++I   +V  FKA   LK
Sbjct: 61 RNPKTGEEIQIAEAKVPSFKAGKALK 86


>gi|293604178|ref|ZP_06686586.1| integration host factor beta subunit [Achromobacter piechaudii ATCC
           43553]
 gi|292817403|gb|EFF76476.1| integration host factor beta subunit [Achromobacter piechaudii ATCC
           43553]
          Length = 119

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 65/110 (59%), Gaps = 6/110 (5%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+ +++  +  L+ +D+   V T+ + +  +   G+ I+I  F +F + Q+  R+
Sbjct: 1   MTKSELIAALAARYPQLAARDTDYAVKTVLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           GRN ++ ++V +  ++V  FKA   L++R+  D+ G   N +D  S SGS
Sbjct: 61  GRNPKSGEQVLVPGKQVPHFKAGKELRERV--DLVG--GNDEDAQS-SGS 105


>gi|320451084|ref|YP_004203180.1| DNA-binding protein HU 1 [Thermus scotoductus SA-01]
 gi|320151253|gb|ADW22631.1| DNA-binding protein HU 1 [Thermus scotoductus SA-01]
          Length = 97

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 51/91 (56%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+T++DLV  ++   GL +KD    V    +++ ++   G  ++++ F TF V+++ +R
Sbjct: 5  KTVTKADLVDQVAAATGLKKKDVKAAVDAFLSKVEEALASGNKVQLTGFGTFEVRKRKAR 64

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           G    T +++KI   +   FK    LK+++
Sbjct: 65 TGVKPGTKEKIKIPATQYPAFKPGKALKEKV 95


>gi|309378123|emb|CBX23232.1| DNA-binding protein HU-beta [Neisseria lactamica Y92-1009]
          Length = 94

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I++E G+S+  + + +    N + D+  +G+ + +  F TF+V ++  R G
Sbjct: 6  VNKSELIEAIAQEAGISKAAAQKALDATTNAVTDALKKGDTVTLVGFGTFYVGERAERQG 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + + I   +   F+A   LK
Sbjct: 66 RNPKTGEPLTIAAAKTPKFRAGKALK 91


>gi|298377242|ref|ZP_06987195.1| integration host factor, beta subunit [Bacteroides sp. 3_1_19]
 gi|298265656|gb|EFI07316.1| integration host factor, beta subunit [Bacteroides sp. 3_1_19]
          Length = 91

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSRV 63
          + R +LV+S+ +E GL  K+  R V      +    +R GE+I +  F +F   Q+  R+
Sbjct: 1  MNRGELVQSLVEETGLP-KNVVRAVVNALPTVVAKGIREGESISMKGFGSFVPWQQSERL 59

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T +EV I PR  V FKA S L K +
Sbjct: 60 ARNPKTGEEVMITPRVSVKFKAGSDLLKEL 89


>gi|294635327|ref|ZP_06713824.1| DNA-binding protein HU-beta [Edwardsiella tarda ATCC 23685]
 gi|291091303|gb|EFE23864.1| DNA-binding protein HU-beta [Edwardsiella tarda ATCC 23685]
          Length = 90

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I++   +S+  + R +      + +S  +G+A+ +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAEGADISKAAAGRALDAFIASVTESLQQGDAVALVGFGTFDVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  F+A   LK  +
Sbjct: 61 RNPQTGKEIEISAAKVPGFRAGKALKDAV 89


>gi|218297163|ref|ZP_03497825.1| histone family protein DNA-binding protein [Thermus aquaticus
          Y51MC23]
 gi|218242440|gb|EED08979.1| histone family protein DNA-binding protein [Thermus aquaticus
          Y51MC23]
          Length = 97

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 50/91 (54%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+T++DLV  ++   GL +KD+   +     ++ ++   G  ++++ F TF V+++ +R
Sbjct: 5  KTVTKADLVDQVAAAAGLKKKDAKAAIDAFLAKVEEALAAGNKVQLTGFGTFEVRKRKAR 64

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           G    T +++KI   +   FK    LK ++
Sbjct: 65 TGVKPGTKEKIKIPATQYPAFKPGKALKDKV 95


>gi|15607110|ref|NP_214492.1| integration host factor beta subunit [Aquifex aeolicus VF5]
 gi|2984363|gb|AAC07882.1| integration host factor beta subunit [Aquifex aeolicus VF5]
          Length = 100

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 52/98 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+SD+ K +++  G+S K +   V   F  +    + GE +++    TF +K+K  R  
Sbjct: 1   MTKSDIAKELARRHGISYKKALLIVNMTFEILKAKILNGEKVEVRGLGTFKLKRKPGRFV 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           +N +T  E+ +  R V  +K S +L+K++  D    +C
Sbjct: 61  KNPKTGIEIYVKERYVPYYKMSKLLRKKLNGDKEREEC 98


>gi|315635141|ref|ZP_07890419.1| DNA-binding protein HU [Aggregatibacter segnis ATCC 33393]
 gi|315476103|gb|EFU66857.1| DNA-binding protein HU [Aggregatibacter segnis ATCC 33393]
          Length = 90

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+    L++K +   +    + I  S  +GEA+++  F TF V  + +R G
Sbjct: 1  MNKTDLIDAIASAAELNKKQAKAALEATLDAITGSLKKGEAVQLIGFGTFKVNARKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT  E+KI   +V  F +   LK
Sbjct: 61 RNPQTGAEIKIAASKVPAFVSGKALK 86


>gi|188026554|ref|ZP_02962557.2| hypothetical protein PROSTU_04688 [Providencia stuartii ATCC
          25827]
 gi|188019405|gb|EDU57445.1| hypothetical protein PROSTU_04688 [Providencia stuartii ATCC
          25827]
          Length = 96

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ E  +S+  + R V      +  S  +G+ + +  F TF V+++ +R G
Sbjct: 6  VNKSQLIDQIASEANISKAAAGRVVDAFVASVTTSLSKGDDVALVGFGTFTVRERAARTG 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI   +V  F+    LK  +
Sbjct: 66 RNPQTGKEIKIAAAKVPAFRPGKGLKDAV 94


>gi|110597679|ref|ZP_01385964.1| Histone-like bacterial DNA-binding protein [Chlorobium
          ferrooxidans DSM 13031]
 gi|110340799|gb|EAT59276.1| Histone-like bacterial DNA-binding protein [Chlorobium
          ferrooxidans DSM 13031]
          Length = 91

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++++LV+ I+++  L++ D+ R V    N +  S  +G+ + +  F TF    +  R G
Sbjct: 1  MSKAELVEKIAEQANLTKVDAERAVNAFINVVTGSLKQGDDVTLVGFGTFTTGDRAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   + I  ++VV FK    LK+ +
Sbjct: 61 RNPQTGAAITISAKKVVKFKPGKALKEEV 89


>gi|320528538|ref|ZP_08029695.1| DNA-binding protein HU [Solobacterium moorei F0204]
 gi|320131124|gb|EFW23697.1| DNA-binding protein HU [Solobacterium moorei F0204]
          Length = 96

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 50/88 (56%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K +T+  L   +++++GL++K +   V  +F+EI  +  +G  + ++ F  F V +K +R
Sbjct: 5  KVVTKKTLADDLAEKYGLTKKAAGEAVNYVFDEIATTIKKGGEVSLNGFGKFTVVKKKAR 64

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
           G N  T +++KI   +   FKAS  LK
Sbjct: 65 TGLNPATGEKIKIKATKAPKFKASKTLK 92


>gi|326804607|ref|YP_004327478.1| DNA binding protein [Salmonella phage Vi01]
 gi|301795257|emb|CBW37975.1| DNA binding protein [Salmonella phage Vi01]
          Length = 92

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R+D +  I++  G+++ ++ + V +  N +  +   G++++   F  F VK + +R G
Sbjct: 1  MNRTDFIAHIAQTQGMTKGEAEKIVASFINGVKTAVAAGQSVQFVGFGAFEVKHQEARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN    Q ++I+ + VV FK    LK
Sbjct: 61 RNPLNGQAIQIEAKNVVKFKVGEGLK 86


>gi|295426287|ref|ZP_06818947.1| DNA-binding protein HU [Lactobacillus amylolyticus DSM 11664]
 gi|295064026|gb|EFG54974.1| DNA-binding protein HU [Lactobacillus amylolyticus DSM 11664]
          Length = 117

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 48/88 (54%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
            +++LV  ++ +  L++K+    V  LF+ I ++  +G  +++  F TF V+ + +R GR
Sbjct: 29  NKAELVSEVASKTDLTKKEVAAAVEALFSSIQENLSKGNKVQLIGFGTFEVRHRAARKGR 88

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N QT  E++I    V  FK    LK  +
Sbjct: 89  NPQTGAEIQIPASEVPAFKPGKALKYAV 116


>gi|148381474|ref|YP_001256015.1| DNA-binding protein HU [Clostridium botulinum A str. ATCC 3502]
 gi|153931858|ref|YP_001385849.1| DNA-binding protein HU [Clostridium botulinum A str. ATCC 19397]
 gi|153937038|ref|YP_001389256.1| DNA-binding protein HU [Clostridium botulinum A str. Hall]
 gi|153939802|ref|YP_001392888.1| DNA-binding protein HU [Clostridium botulinum F str. Langeland]
 gi|168181003|ref|ZP_02615667.1| DNA-binding protein HU [Clostridium botulinum NCTC 2916]
 gi|170755876|ref|YP_001783174.1| DNA-binding protein HU [Clostridium botulinum B1 str. Okra]
 gi|170761658|ref|YP_001788874.1| DNA-binding protein HU [Clostridium botulinum A3 str. Loch Maree]
 gi|226950990|ref|YP_002806081.1| DNA-binding protein HU [Clostridium botulinum A2 str. Kyoto]
 gi|148290958|emb|CAL85094.1| DNA-binding protein HU [Clostridium botulinum A str. ATCC 3502]
 gi|152927902|gb|ABS33402.1| DNA-binding protein HU [Clostridium botulinum A str. ATCC 19397]
 gi|152932952|gb|ABS38451.1| DNA-binding protein HU [Clostridium botulinum A str. Hall]
 gi|152935698|gb|ABS41196.1| DNA-binding protein HU [Clostridium botulinum F str. Langeland]
 gi|169121088|gb|ACA44924.1| DNA-binding protein HU [Clostridium botulinum B1 str. Okra]
 gi|169408647|gb|ACA57058.1| DNA-binding protein HU [Clostridium botulinum A3 str. Loch Maree]
 gi|182668057|gb|EDT80036.1| DNA-binding protein HU [Clostridium botulinum NCTC 2916]
 gi|226841522|gb|ACO84188.1| DNA-binding protein HU [Clostridium botulinum A2 str. Kyoto]
 gi|295320865|gb|ADG01243.1| DNA-binding protein HU [Clostridium botulinum F str. 230613]
 gi|322807859|emb|CBZ05434.1| DNA-binding protein HBsu [Clostridium botulinum H04402 065]
          Length = 92

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ S++++  L++KD+   +      + ++   GE +++  F TF  +++  RVG
Sbjct: 1  MNKSELITSMAEKSKLTKKDAETALKAFIESVEEALEGGEKVQLVGFGTFETRERAERVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E+ I      VFKA   LK+++
Sbjct: 61 RNPRTKEEITIPASIAPVFKAGKELKEKV 89


>gi|168183614|ref|ZP_02618278.1| DNA-binding protein HU [Clostridium botulinum Bf]
 gi|237796995|ref|YP_002864547.1| DNA-binding protein HU [Clostridium botulinum Ba4 str. 657]
 gi|182673203|gb|EDT85164.1| DNA-binding protein HU [Clostridium botulinum Bf]
 gi|229261295|gb|ACQ52328.1| DNA-binding protein HU [Clostridium botulinum Ba4 str. 657]
          Length = 93

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ S++++  L++KD+   +      + ++   GE +++  F TF  +++  RVG
Sbjct: 1  MNKSELITSMAEKSKLTKKDAETALKAFIESVEEALEGGEKVQLVGFGTFETRERAERVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E+ I      VFKA   LK+++
Sbjct: 61 RNPRTKEEITIPASIAPVFKAGKELKEKV 89


>gi|295109533|emb|CBL23486.1| Bacterial nucleoid DNA-binding protein [Ruminococcus obeum
          A2-162]
          Length = 91

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++KE  LS+KD    + +  + + D   +G  I++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAMAKETNLSKKDVEAVLKSFTDVVADELKKGGKIQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + + I   +   FKA   LK
Sbjct: 61 RNPQTGETMTIAASKAPKFKAGKALK 86


>gi|297568603|ref|YP_003689947.1| histone family protein DNA-binding protein [Desulfurivibrio
          alkaliphilus AHT2]
 gi|296924518|gb|ADH85328.1| histone family protein DNA-binding protein [Desulfurivibrio
          alkaliphilus AHT2]
          Length = 90

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 49/85 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV+ ++K  G+S+  + + +    + I  +  +G+ + +  F TF V ++ +R G
Sbjct: 1  MNKSELVEQMAKAGGISKATAEKALAGALDGITKALKKGDKVTLVGFGTFSVTKRAARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN QT + + I  R+V  FKA S L
Sbjct: 61 RNPQTGKPITIKARKVARFKAGSKL 85


>gi|261867382|ref|YP_003255304.1| DNA-binding protein HU [Aggregatibacter actinomycetemcomitans
          D11S-1]
 gi|293390874|ref|ZP_06635208.1| DNA-binding protein HU [Aggregatibacter actinomycetemcomitans
          D7S-1]
 gi|261412714|gb|ACX82085.1| DNA-binding protein HU [Aggregatibacter actinomycetemcomitans
          D11S-1]
 gi|290951408|gb|EFE01527.1| DNA-binding protein HU [Aggregatibacter actinomycetemcomitans
          D7S-1]
          Length = 90

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+    L++K +   +    + I  S  +GEA+++  F TF V  + +R G
Sbjct: 1  MNKTDLIDAIASSAELNKKQAKAALEATLDAITGSLKKGEAVQLIGFGTFKVNARKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT  E+KI   +V  F +   LK
Sbjct: 61 RNPQTGAEIKIAASKVPAFVSGKALK 86


>gi|253565663|ref|ZP_04843118.1| DNA-binding protein HU [Bacteroides sp. 3_2_5]
 gi|251945942|gb|EES86349.1| DNA-binding protein HU [Bacteroides sp. 3_2_5]
          Length = 96

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 43/82 (52%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          +    +S+  G + K ++  +T+L ++I      G AI I  F TF VK+K  R+  N  
Sbjct: 5  EFTSELSRRLGYNTKYTSELITSLLSDITQELQEGNAIGIQGFGTFEVKKKAERIVINPV 64

Query: 69 TNQEVKIDPRRVVVFKASSILK 90
          T   + + P+ V+ FK S ILK
Sbjct: 65 TKLRLLVPPKLVLAFKPSPILK 86


>gi|192361790|ref|YP_001982469.1| DNA-binding protein HU superfamily [Cellvibrio japonicus Ueda107]
 gi|190687955|gb|ACE85633.1| DNA-binding protein HU superfamily [Cellvibrio japonicus Ueda107]
          Length = 90

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+++I+    + +  + R +  +   I  +   G+++ +  F TF VK++ +R G
Sbjct: 1  MNKTELIEAIAASADIPKAAAGRALDAVVESITGALKNGDSVVLVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI   +V  FKA   LK  +
Sbjct: 61 RNPQTGEEIKIAAAKVPGFKAGKALKDAV 89


>gi|150025716|ref|YP_001296542.1| histone-like DNA-binding protein HU-alpha [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772257|emb|CAL43733.1| Histone-like bacterial DNA-binding protein HU-alpha [Flavobacterium
           psychrophilum JIP02/86]
          Length = 98

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 7/104 (6%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D+V  IS++ GL + D    V T   E+ +S   G+ + +  F +F VK +  + G
Sbjct: 1   MTKADIVAKISEKLGLEKGDVQATVETFMEEVKNSLETGDNVYLRGFGSFIVKTRAEKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT 108
           RN+  N  +KI    +  FK + +        + G K N +  T
Sbjct: 61  RNISKNTTIKIPAHNIPAFKPAKVF-------VEGVKTNNEATT 97


>gi|28872577|ref|NP_795196.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28855832|gb|AAO58891.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 111

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
           + D+  +I+++  L+++ S R +  +  EI  +  R +++ +  F TF  + +G+R G+N
Sbjct: 23  KPDVAAAIAEKADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTGKN 82

Query: 67  LQTNQEVKIDPRRVVVFKASSILK 90
            QT + VKI     V FK    LK
Sbjct: 83  PQTGEPVKIKASNTVAFKPGKALK 106


>gi|190015068|ref|YP_001966692.1| DNA-binding protein HU [Bacillus cereus]
 gi|190015334|ref|YP_001967017.1| DNA-binding protein HU [Bacillus cereus]
 gi|218848460|ref|YP_002455066.1| DNA-binding protein HU 1 [Bacillus cereus AH820]
 gi|228943061|ref|ZP_04105556.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228975886|ref|ZP_04136415.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|71025122|gb|AAZ17499.1| HbsU-like protein [Bacillus thuringiensis]
 gi|116584744|gb|ABK00859.1| DNA-binding protein HU [Bacillus cereus]
 gi|116585015|gb|ABK01124.1| DNA-binding protein HU [Bacillus cereus]
 gi|218540511|gb|ACK92907.1| DNA-binding protein HU 1 [Bacillus cereus AH820]
 gi|228783849|gb|EEM31899.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228816590|gb|EEM62720.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|326943313|gb|AEA19208.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 90

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K ++++  L++KD+      + + I  +    E ++I  F TF V+++ +R G
Sbjct: 1  MNKTELTKVVAEKAELTQKDAAAATQAVLDTITTALANEEKVQILGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I   +   FKA   LK
Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELK 86


>gi|78046640|ref|YP_362815.1| histone-like protein [Xanthomonas campestris pv. vesicatoria str.
          85-10]
 gi|78035070|emb|CAJ22715.1| histone-like protein [Xanthomonas campestris pv. vesicatoria str.
          85-10]
          Length = 90

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++    +S+ +++R V  + +EI  +  +G+A+ +  F TF V+++  R G
Sbjct: 1  MNKTELIDGVAAAADISKAEASRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   +KI   +   FKA   LK  +
Sbjct: 61 RNPKTGDSIKIAASKNPAFKAGKALKDAV 89


>gi|56477449|ref|YP_159038.1| DNA-binding protein HU-alpha [Aromatoleum aromaticum EbN1]
 gi|56313492|emb|CAI08137.1| DNA-binding protein hu-alpha [Aromatoleum aromaticum EbN1]
          Length = 92

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + + V++++    +SR  + R ++T+ + I +    GE +  + F +F V ++  R G
Sbjct: 1  MNKGEFVEALADRLDVSRAQADRALSTVLDIIVERMAAGEKVAFTGFGSFEVSERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   +KI   RV  F A + LK  I
Sbjct: 61 RNPQTGASIKIAASRVPKFSAGATLKTAI 89


>gi|262384433|ref|ZP_06077568.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B]
 gi|262294136|gb|EEY82069.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B]
          Length = 91

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSRV 63
          + R +LV+S+ +E GL  K+  R V      +    +R GE+I +  F +F   Q+  R+
Sbjct: 1  MNRGELVQSLVEETGLP-KNVVRTVVNALPTVVAKGIREGESISMKGFGSFVPWQQSERL 59

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T +EV I PR  V FKA S L K +
Sbjct: 60 ARNPKTGEEVMITPRVSVKFKAGSDLLKEL 89


>gi|33597659|ref|NP_885302.1| integration host factor beta-subunit [Bordetella parapertussis
          12822]
 gi|81713696|sp|Q7W605|IHFB_BORPA RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|33574087|emb|CAE38412.1| integration host factor beta-subunit [Bordetella parapertussis]
          Length = 119

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ +++  +  L+ +D+   V T+ + +  +   G+ I+I  F +F + Q+  R+
Sbjct: 1  MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V +  ++V  FKA   L++R+
Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERV 90


>gi|317056256|ref|YP_004104723.1| histone family protein DNA-binding protein [Ruminococcus albus 7]
 gi|315448525|gb|ADU22089.1| histone family protein DNA-binding protein [Ruminococcus albus 7]
          Length = 92

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+++ G S+K++ + + T+ + I  +   GE + +  F TF V+ + ++V 
Sbjct: 1  MNKAELINVIAEKGGYSKKEADKALATVLDSITGALENGEKVTLVGFGTFEVRDRAAKVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N  T   V +  R+V  FKA S LK
Sbjct: 61 MNPVTKAPVDVPARKVPAFKAGSALK 86


>gi|254432410|ref|ZP_05046113.1| DNA-binding protein HU [Cyanobium sp. PCC 7001]
 gi|197626863|gb|EDY39422.1| DNA-binding protein HU [Cyanobium sp. PCC 7001]
          Length = 91

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ D ++ V      I DS V G+ + I  F +F  +++ +R G
Sbjct: 1  MNKADLVNLVAARTELTKTDVSQVVDAAIETIIDSVVEGKKVSILGFGSFEPRERSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T +++KI  +RV  F A  + K R+
Sbjct: 61 LNPKTGEKIKIPAKRVPAFTAGKMFKDRV 89


>gi|58038619|ref|YP_190583.1| integration host factor beta-subunit [Gluconobacter oxydans 621H]
 gi|58001033|gb|AAW59927.1| Integration host factor beta-subunit [Gluconobacter oxydans 621H]
          Length = 101

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 1/98 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +TRS+L+  ++  +  L  +D  R V  +F+EI  +  RG+ +++  F  F  +++ +R 
Sbjct: 1   MTRSELIAELAAAYPHLLTRDIERIVHAVFDEIGAALARGDRVELRGFGAFLPRERAART 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T   V ++ + V  FK    L++R+   +  RK
Sbjct: 61  GRNPRTGDVVPVEEKSVPFFKVGKELRERVNQRLSTRK 98


>gi|33863662|ref|NP_895222.1| histone-like DNA-binding protein [Prochlorococcus marinus str.
          MIT 9313]
 gi|124022281|ref|YP_001016588.1| histone-like DNA-binding protein [Prochlorococcus marinus str.
          MIT 9303]
 gi|33635245|emb|CAE21570.1| Bacterial DNA-binding protein [Prochlorococcus marinus str. MIT
          9313]
 gi|123962567|gb|ABM77323.1| Bacterial histone-like DNA-binding protein [Prochlorococcus
          marinus str. MIT 9303]
          Length = 91

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ D +  V    + I DS V G+ + I  F +F  + + +R G
Sbjct: 1  MNKADLVNLVAARTELTKTDVSLVVDAAIDTIIDSVVEGKKVSILGFGSFEPRDRSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T Q++KI  +RV  F A  + K R+
Sbjct: 61 LNPKTGQKIKIPAKRVPAFTAGKMFKDRV 89


>gi|327479102|gb|AEA82412.1| HU family DNA-binding protein [Pseudomonas stutzeri DSM 4166]
          Length = 90

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 48/87 (55%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L  +I+++  LS+  + R +  + +EI ++  R +++ +  F TF  + +G+R G+N
Sbjct: 3  KPELAAAIAEKADLSKDQANRVLNAVLDEITNALNRKDSVTLVGFGTFVQRHRGARTGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT Q V I     V FK   +LK  +
Sbjct: 63 PQTGQPVTIKASNTVAFKPGKMLKDAV 89


>gi|292487472|ref|YP_003530344.1| transcriptional regulator HU subunit beta [Erwinia amylovora
          CFBP1430]
 gi|292898714|ref|YP_003538083.1| DNA-binding protein HU-beta [Erwinia amylovora ATCC 49946]
 gi|291198562|emb|CBJ45670.1| DNA-binding protein HU-beta [Erwinia amylovora ATCC 49946]
 gi|291552891|emb|CBA19936.1| transcriptional regulator HU subunit beta [Erwinia amylovora
          CFBP1430]
 gi|312171577|emb|CBX79835.1| transcriptional regulator HU subunit beta [Erwinia amylovora ATCC
          BAA-2158]
          Length = 90

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ E  +S+  + R +      + +S   G+ + +  F TF V+++  RVG
Sbjct: 1  MNKSQLIDKIAAEADISKAAAGRVLDAFIGSVTESLQAGDEVALVGFGTFSVRERAERVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F+A   LK  +
Sbjct: 61 RNPQTGKEITIAAGKVPGFRAGKALKDAV 89


>gi|269798417|ref|YP_003312317.1| histone family protein DNA-binding protein [Veillonella parvula
          DSM 2008]
 gi|282850654|ref|ZP_06260033.1| DNA-binding protein HU [Veillonella parvula ATCC 17745]
 gi|294792285|ref|ZP_06757433.1| DNA-binding protein HU [Veillonella sp. 6_1_27]
 gi|294794144|ref|ZP_06759281.1| DNA-binding protein HU [Veillonella sp. 3_1_44]
 gi|269095046|gb|ACZ25037.1| histone family protein DNA-binding protein [Veillonella parvula
          DSM 2008]
 gi|282580147|gb|EFB85551.1| DNA-binding protein HU [Veillonella parvula ATCC 17745]
 gi|294455714|gb|EFG24086.1| DNA-binding protein HU [Veillonella sp. 3_1_44]
 gi|294457515|gb|EFG25877.1| DNA-binding protein HU [Veillonella sp. 6_1_27]
          Length = 99

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  L++KD+ + V  +F+ +      G  +++  F TF V+++ +R G
Sbjct: 1  MNKTELIASVAQKTELTKKDAEKAVKAVFDTVAQELAAGGKVQVIGFGTFEVRERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN Q  + + I   +   FKA   LK+++
Sbjct: 61 RNPQNGKTITIAASKSPAFKAGKGLKEQV 89


>gi|94497483|ref|ZP_01304053.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58]
 gi|94423114|gb|EAT08145.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58]
          Length = 90

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+ ++++  GLS+ D+T+ V  +F+ I  +  +G+ +++  F TF V Q+ +  G
Sbjct: 1  MNKQDLISTVAESSGLSKNDATKAVEGVFDAITGALKKGDEVRLVGFGTFSVSQRKASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I       FKA   LK  +
Sbjct: 61 RNPRTGETMTIKASAQPKFKAGKGLKDSV 89


>gi|213968551|ref|ZP_03396694.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
          T1]
 gi|301383523|ref|ZP_07231941.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
          Max13]
 gi|302062573|ref|ZP_07254114.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
          K40]
 gi|302130240|ref|ZP_07256230.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
          NCPPB 1108]
 gi|213926839|gb|EEB60391.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
          T1]
 gi|330967966|gb|EGH68226.1| DNA-binding protein HU family [Pseudomonas syringae pv.
          actinidiae str. M302091]
 gi|331017834|gb|EGH97890.1| DNA-binding protein HU family [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
          Length = 91

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + D+  +I+++  L+++ S R +  +  EI  +  R +++ +  F TF  + +G+R G+N
Sbjct: 3  KPDVAAAIAEKADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT + VKI     V FK    LK
Sbjct: 63 PQTGEPVKIKASNTVAFKPGKALK 86


>gi|53804258|ref|YP_113869.1| integration host factor subunit beta [Methylococcus capsulatus
          str. Bath]
 gi|81682135|sp|Q608S8|IHFB_METCA RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|53758019|gb|AAU92310.1| integration host factor, beta subunit [Methylococcus capsulatus
          str. Bath]
          Length = 95

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++S++ ++  LS +D    +  +   + ++   GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIESLAGKYPHLSPRDIEHAIKEMIGCMSEALAGGERIEIRGFGSFSLHHRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  RRV  FK    L+ R+
Sbjct: 61 GRNPKTGESVHLPSRRVPHFKPGKELRDRV 90


>gi|114563759|ref|YP_751272.1| histone family protein DNA-binding protein [Shewanella
          frigidimarina NCIMB 400]
 gi|114335052|gb|ABI72434.1| histone family protein DNA-binding protein [Shewanella
          frigidimarina NCIMB 400]
          Length = 91

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + +    + +    G+ I +  F TF V+Q+  R G
Sbjct: 1  MNKSELIEKIASGADISKAAAGRALDSFIAAVTEGLKDGDKISLVGFGTFEVRQRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    +  FKA   LK  +
Sbjct: 61 RNPQTGKEIKIAAANIPAFKAGKALKDAV 89


>gi|227358099|ref|ZP_03842441.1| DNA-binding protein HU-beta [Proteus mirabilis ATCC 29906]
 gi|227161834|gb|EEI46866.1| DNA-binding protein HU-beta [Proteus mirabilis ATCC 29906]
          Length = 96

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 50/91 (54%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K++ ++ L+  I+    +++  + R V  +   I +S  +G+ + +  F TF V+ + +R
Sbjct: 4  KSVNKTQLIDKIAANADITKAAAGRVVDAMVASITESLQKGDDVALVGFGTFTVRDRAAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN QT +E++I   +V  F+A   LK  +
Sbjct: 64 TGRNPQTGKEIQIAAAKVPAFRAGKGLKDAV 94


>gi|39998222|ref|NP_954173.1| DNA-binding protein HU [Geobacter sulfurreducens PCA]
 gi|39985168|gb|AAR36523.1| DNA-binding protein HU [Geobacter sulfurreducens PCA]
 gi|298507158|gb|ADI85881.1| histone-like protein [Geobacter sulfurreducens KN400]
          Length = 94

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 55/97 (56%), Gaps = 4/97 (4%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+++LV +++K   L++  + + V  + + + D+  +G+ + +  F +F V  + +R G
Sbjct: 1   MTKAELVDAVAKSANLTKAAADKAVGAVISAVSDALKKGDKVTLVGFGSFEVSTRKARTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           RN QT +E+KI   +V  F+    LK    D + G+K
Sbjct: 61  RNPQTGKEIKIAAAKVPKFRPGKALK----DAVAGKK 93


>gi|66048251|ref|YP_238092.1| histone-like DNA-binding protein [Pseudomonas syringae pv.
          syringae B728a]
 gi|63258958|gb|AAY40054.1| Histone-like bacterial DNA-binding protein [Pseudomonas syringae
          pv. syringae B728a]
          Length = 91

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + D+  +I+++  L+++ S R +  +  EI  +  R +++ +  F TF  + +G+R G+N
Sbjct: 3  KPDVAAAIAEKADLTKEQSNRVLNAILEEITGALNRKDSVTLVGFGTFLQRHRGARTGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT + VKI     V FK    LK
Sbjct: 63 PQTGEPVKIKASNTVAFKPGKALK 86


>gi|302344529|ref|YP_003809058.1| histone family protein DNA-binding protein [Desulfarculus baarsii
          DSM 2075]
 gi|301641142|gb|ADK86464.1| histone family protein DNA-binding protein [Desulfarculus baarsii
          DSM 2075]
          Length = 93

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 49/90 (54%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++D++  +     L++ ++   +      I ++   G+ + +S F  + V+ K  R 
Sbjct: 2  TLTKADIIARVYANGQLTKAEAADSIEESLRLIKEALGSGDEVLVSGFGKWSVRDKNQRR 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QT   + + PRRVV F+ S +LK +I
Sbjct: 62 GRNPQTGDPLTLPPRRVVTFRPSRVLKAKI 91


>gi|209883627|ref|YP_002287484.1| integration host factor, beta subunit [Oligotropha carboxidovorans
           OM5]
 gi|226709797|sp|B6JCN9|IHFB_OLICO RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|209871823|gb|ACI91619.1| integration host factor, beta subunit [Oligotropha carboxidovorans
           OM5]
          Length = 106

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV+ I++    L ++D    V  +  EI  +  RG+ +++  F  F VK + +R 
Sbjct: 1   MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVSALARGDRVELRGFGAFSVKHRPARA 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111
           GRN +T + V ++ + V  FK    +++R+  D        D  T PS
Sbjct: 61  GRNPRTGEHVPVEQKSVPFFKTGKEMRERLNRD------GLDGATPPS 102


>gi|261401368|ref|ZP_05987493.1| DNA-binding protein HU-beta [Neisseria lactamica ATCC 23970]
 gi|313668345|ref|YP_004048629.1| DNA-binding protein [Neisseria lactamica ST-640]
 gi|269208663|gb|EEZ75118.1| DNA-binding protein HU-beta [Neisseria lactamica ATCC 23970]
 gi|313005807|emb|CBN87261.1| putative DNA-binding protein [Neisseria lactamica 020-06]
          Length = 89

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I++E G+S+  + + +    N + D+  +G+ + +  F TF+V ++  R G
Sbjct: 1  MNKSELIEAIAQEAGISKAAAQKALDATTNAVTDALKKGDTVTLVGFGTFYVGERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + + I   +   F+A   LK
Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKALK 86


>gi|189461332|ref|ZP_03010117.1| hypothetical protein BACCOP_01982 [Bacteroides coprocola DSM
          17136]
 gi|189431861|gb|EDV00846.1| hypothetical protein BACCOP_01982 [Bacteroides coprocola DSM
          17136]
          Length = 96

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 48/85 (56%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          +L+  +S+  G + KD+ R +T++   + +    G+ I I  F TF VK+K  R+  N  
Sbjct: 5  ELIGELSRRLGYTNKDAARLLTSVTGIMGEELQEGKVIAIQDFGTFEVKKKMERITVNPV 64

Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93
          T Q   + P+ ++ F+ S++ K+R+
Sbjct: 65 TKQRFLVPPKLILNFRPSNLWKERL 89


>gi|118602405|ref|YP_903620.1| histone family protein DNA-binding protein [Candidatus Ruthia
          magnifica str. Cm (Calyptogena magnifica)]
 gi|118567344|gb|ABL02149.1| histone family protein DNA-binding protein [Candidatus Ruthia
          magnifica str. Cm (Calyptogena magnifica)]
          Length = 91

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    LS+ D++R +    + I  +    + ++++ F +F V+ + +R G
Sbjct: 1  MNKSELIDAIALAANLSKVDASRALNATTDAITGAMASSDGVQLTGFGSFVVRNRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I   +V  FKA   LK+ +
Sbjct: 61 RNPQTGATIQIKASKVAAFKAGKALKEAV 89


>gi|312867148|ref|ZP_07727358.1| DNA-binding protein HU-alpha [Streptococcus parasanguinis F0405]
 gi|322389040|ref|ZP_08062608.1| DNA-binding protein HU [Streptococcus parasanguinis ATCC 903]
 gi|311097277|gb|EFQ55511.1| DNA-binding protein HU-alpha [Streptococcus parasanguinis F0405]
 gi|321144263|gb|EFX39673.1| DNA-binding protein HU [Streptococcus parasanguinis ATCC 903]
          Length = 91

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 51/87 (58%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F  + +   +GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT +E+KI   +V  FKA   LK+ +
Sbjct: 64 PQTGKEIKIAASKVPAFKAGKALKEAV 90


>gi|300857295|ref|YP_003782279.1| putative DNA-binding protein HU [Clostridium ljungdahlii DSM
          13528]
 gi|300437410|gb|ADK17177.1| predicted DNA-binding protein HU [Clostridium ljungdahlii DSM
          13528]
          Length = 91

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  I+++  L++KD    +      + ++  +G+ +++  F TF  +++  R+G
Sbjct: 1  MNKSELIAGIAEKSKLTKKDVEAALKGFIESVEETLEKGDKVQLVGFGTFETRKRAERIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E+KI    V VFKA    K R+
Sbjct: 61 RNPRTKEEIKIPESTVPVFKAGKEFKDRV 89


>gi|291515643|emb|CBK64853.1| Bacterial nucleoid DNA-binding protein [Alistipes shahii WAL
          8301]
          Length = 86

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 48/83 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++  V++I+ +  +S+ D+ + V  +      S   GE + ++   TF V+QK  RVG
Sbjct: 1  MNKAQFVEAIALDANISKIDARKAVDAMIRVTVQSLREGERLTLTGLGTFSVQQKSERVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASS 87
          RN +T   VKI PR+V+ F+ ++
Sbjct: 61 RNPRTGAAVKIPPRKVIKFRPTA 83


>gi|94971730|ref|YP_593778.1| histone-like DNA-binding protein [Candidatus Koribacter
          versatilis Ellin345]
 gi|94553780|gb|ABF43704.1| histone-like DNA-binding protein [Candidatus Koribacter
          versatilis Ellin345]
          Length = 93

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  I+   G+S+  ++  +  L + +  S  +GE + +  F TF V Q+ +R G
Sbjct: 1  MNKADLVDKIAAASGISKTSASEAIDALVDGVTTSLKKGERVTLVGFGTFAVSQRRARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   +KI  R+V  F     LKK +
Sbjct: 61 RNPQTGSVIKIAARKVAKFTPGVELKKAV 89


>gi|83720765|ref|YP_442176.1| integration host factor subunit beta [Burkholderia thailandensis
           E264]
 gi|167581054|ref|ZP_02373928.1| integration host factor subunit beta [Burkholderia thailandensis
           TXDOH]
 gi|167619132|ref|ZP_02387763.1| integration host factor subunit beta [Burkholderia thailandensis
           Bt4]
 gi|257138365|ref|ZP_05586627.1| integration host factor subunit beta [Burkholderia thailandensis
           E264]
 gi|123767673|sp|Q2SY23|IHFB_BURTA RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|83654590|gb|ABC38653.1| integration host factor, beta subunit [Burkholderia thailandensis
           E264]
          Length = 107

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 60/103 (58%), Gaps = 3/103 (2%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + D+  +G  I+I  F +F + ++ +RV
Sbjct: 1   MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN ++ ++V++  + V  FK    L++R+  D R  +  K+D
Sbjct: 61  GRNPKSGEKVQVPEKHVPHFKPGKELRERV--DGRAGEPLKND 101


>gi|84498266|ref|ZP_00997063.1| DNA-binding protein HU [Janibacter sp. HTCC2649]
 gi|84381766|gb|EAP97649.1| DNA-binding protein HU [Janibacter sp. HTCC2649]
          Length = 92

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R+DL   +  +  LS  D+ R +  +   I D+ V G+ + +  F  F  +++ +R G
Sbjct: 1  MNRTDLKNKVVDKAELSGADADRAIDAVLGAITDALVAGDKVSLPGFGIFETRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I       FK ++ LK+++
Sbjct: 61 RNPQTGEALEIKASTAAAFKPAAELKRKL 89


>gi|330878102|gb|EGH12251.1| DNA-binding protein HU family [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
          Length = 92

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + D+  +I+++  L+++ S R +  +  EI  +  R +++ +  F TF  + +G+R G+N
Sbjct: 3  KPDVAAAIAEKADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT + VKI     V FK    LK
Sbjct: 63 PQTGEPVKIKASNTVAFKPGKALK 86


>gi|224542695|ref|ZP_03683234.1| hypothetical protein CATMIT_01880 [Catenibacterium mitsuokai DSM
          15897]
 gi|224524405|gb|EEF93510.1| hypothetical protein CATMIT_01880 [Catenibacterium mitsuokai DSM
          15897]
          Length = 91

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 50/84 (59%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV+ +++   L++ D+ R +  L + +  + V G+ + +    TF V+++ +R G N
Sbjct: 3  KNELVEKVAEGASLTKADAERAINALVDAVSGALVEGDKVALKGLGTFEVRERKARTGIN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           +T + ++I   +V  FKASS LK
Sbjct: 63 PRTRETIEIPASKVPAFKASSTLK 86


>gi|119945204|ref|YP_942884.1| DNA-binding protein HU beta subunit [Psychromonas ingrahamii 37]
 gi|119863808|gb|ABM03285.1| DNA-binding protein HU beta subunit [Psychromonas ingrahamii 37]
          Length = 91

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  L+ +I++   +S+  + R +      +  + V G+ + +  F  F VK++ +R G
Sbjct: 1  MNKGQLIDNIAESADISKAAAGRALDAFIESVTGALVEGDNVSLIGFGAFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QTN+ ++I   +V  FKA   LK  I
Sbjct: 61 RNPQTNEPIQIAAAKVPAFKAGKSLKDAI 89


>gi|313829872|gb|EFS67586.1| DNA-binding protein HU [Propionibacterium acnes HL007PA1]
          Length = 91

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+K+++K+  L+   +   V  L ++I  +  +GE +++    T    ++ +R G
Sbjct: 1  MTKSELIKTVAKQASLTEAQTNEAVKALTDDITAALAKGEKVQLPGLFTAETVERPARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + + I   + V   ASS LKK + D
Sbjct: 61 RNPRTGESMTIPAHKAVKISASSTLKKAVAD 91


>gi|238919015|ref|YP_002932529.1| DNA-binding protein HU-beta [Edwardsiella ictaluri 93-146]
 gi|238868583|gb|ACR68294.1| DNA-binding protein HU-beta [Edwardsiella ictaluri 93-146]
          Length = 90

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I++   +S+  + R +      + +S   G+A+ +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAEGADISKAAAGRALDAFIASVTESVQEGDAVALVGFGTFDVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F+A   LK  +
Sbjct: 61 RNPQTGKEINIPAAKVPGFRAGKALKDAV 89


>gi|92115698|ref|YP_575427.1| integration host factor subunit beta [Nitrobacter hamburgensis
          X14]
 gi|123083883|sp|Q1QS30|IHFB_NITHX RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|91798592|gb|ABE60967.1| integration host factor, beta subunit [Nitrobacter hamburgensis
          X14]
          Length = 101

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  + +EI  +  RG+ +++  F  F VK + +R 
Sbjct: 1  MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVTALARGDRVELRGFGAFSVKHRPARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +D + V  FK    +++R+
Sbjct: 61 GRNPRTGEHVPVDQKSVPFFKTGKEMRERL 90


>gi|297564907|ref|YP_003683879.1| histone family protein DNA-binding protein [Meiothermus silvanus
          DSM 9946]
 gi|296849356|gb|ADH62371.1| histone family protein DNA-binding protein [Meiothermus silvanus
          DSM 9946]
          Length = 96

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 49/91 (53%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT T++DL+  I+   G+ +KD+   V    + + D+   G  ++++ F TF V+++ +R
Sbjct: 4  KTKTKADLIDMIASSSGMKKKDAKTAVDHFLSHLQDALASGNKVQLTGFGTFEVRKRKAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           G    T Q++KI       FK    LK+++
Sbjct: 64 TGVKPGTTQKIKIPASSYPAFKPGKALKEKV 94


>gi|239817235|ref|YP_002946145.1| histone family protein DNA-binding protein [Variovorax paradoxus
          S110]
 gi|239803812|gb|ACS20879.1| histone family protein DNA-binding protein [Variovorax paradoxus
          S110]
          Length = 93

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+++  LS+ D+ R   +   ++  + VRGE +++  F TF V  +  R G
Sbjct: 1  MNKTELIAAIAEDTNLSKADAGRAFDSALEQLSRALVRGETVQLIGFGTFSVADRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T +++ I   +   F A   LK  I
Sbjct: 61 RNPSTGEQITIKASKSAKFAAGKALKDAI 89


>gi|239907543|ref|YP_002954284.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
          RS-1]
 gi|239797409|dbj|BAH76398.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
          RS-1]
          Length = 92

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+K++ +++ L  + +  FV + F  I  + V G+ +++  F +F VK+     G
Sbjct: 1  MNKGELIKAVGEKYNLDHEFAVEFVNSFFESIKQALVNGDRVEVRGFGSFAVKEYDGYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  +V++ P+++  FK     K  +
Sbjct: 61 RNPKTGIKVEVKPKKIPFFKTGRDFKNYL 89


>gi|53720124|ref|YP_109110.1| integration host factor subunit beta [Burkholderia pseudomallei
           K96243]
 gi|53724786|ref|YP_102240.1| integration host factor subunit beta [Burkholderia mallei ATCC
           23344]
 gi|76810828|ref|YP_334371.1| integration host factor subunit beta [Burkholderia pseudomallei
           1710b]
 gi|121598535|ref|YP_993873.1| integration host factor subunit beta [Burkholderia mallei SAVP1]
 gi|124385018|ref|YP_001026936.1| integration host factor subunit beta [Burkholderia mallei NCTC
           10229]
 gi|126441395|ref|YP_001059900.1| integration host factor subunit beta [Burkholderia pseudomallei
           668]
 gi|126451382|ref|YP_001079777.1| integration host factor subunit beta [Burkholderia mallei NCTC
           10247]
 gi|126452191|ref|YP_001067189.1| integration host factor subunit beta [Burkholderia pseudomallei
           1106a]
 gi|134277133|ref|ZP_01763848.1| integration host factor, beta subunit [Burkholderia pseudomallei
           305]
 gi|166999733|ref|ZP_02265567.1| integration host factor, beta subunit [Burkholderia mallei PRL-20]
 gi|167720665|ref|ZP_02403901.1| integration host factor subunit beta [Burkholderia pseudomallei
           DM98]
 gi|167739652|ref|ZP_02412426.1| integration host factor subunit beta [Burkholderia pseudomallei 14]
 gi|167816857|ref|ZP_02448537.1| integration host factor subunit beta [Burkholderia pseudomallei 91]
 gi|167825257|ref|ZP_02456728.1| integration host factor subunit beta [Burkholderia pseudomallei 9]
 gi|167846761|ref|ZP_02472269.1| integration host factor subunit beta [Burkholderia pseudomallei
           B7210]
 gi|167895349|ref|ZP_02482751.1| integration host factor subunit beta [Burkholderia pseudomallei
           7894]
 gi|167903735|ref|ZP_02490940.1| integration host factor subunit beta [Burkholderia pseudomallei
           NCTC 13177]
 gi|167911984|ref|ZP_02499075.1| integration host factor subunit beta [Burkholderia pseudomallei
           112]
 gi|167919975|ref|ZP_02507066.1| integration host factor subunit beta [Burkholderia pseudomallei
           BCC215]
 gi|217420526|ref|ZP_03452031.1| integration host factor, beta subunit [Burkholderia pseudomallei
           576]
 gi|237813294|ref|YP_002897745.1| integration host factor, beta subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238561682|ref|ZP_00441665.2| integration host factor, beta subunit [Burkholderia mallei GB8
           horse 4]
 gi|242317605|ref|ZP_04816621.1| integration host factor, beta subunit [Burkholderia pseudomallei
           1106b]
 gi|254177019|ref|ZP_04883676.1| integration host factor, beta subunit [Burkholderia mallei ATCC
           10399]
 gi|254181090|ref|ZP_04887688.1| integration host factor, beta subunit [Burkholderia pseudomallei
           1655]
 gi|254191994|ref|ZP_04898494.1| integration host factor, beta subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254195591|ref|ZP_04902018.1| integration host factor, beta subunit [Burkholderia pseudomallei
           S13]
 gi|254203924|ref|ZP_04910284.1| integration host factor, beta subunit [Burkholderia mallei FMH]
 gi|254208904|ref|ZP_04915252.1| integration host factor, beta subunit [Burkholderia mallei JHU]
 gi|254258262|ref|ZP_04949316.1| integration host factor, beta subunit [Burkholderia pseudomallei
           1710a]
 gi|254360041|ref|ZP_04976311.1| integration host factor, beta subunit [Burkholderia mallei
           2002721280]
 gi|81685156|sp|Q62M28|IHFB_BURMA RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|81690265|sp|Q63S07|IHFB_BURPS RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|123598384|sp|Q3JPY2|IHFB_BURP1 RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|226709777|sp|A3MHP1|IHFB_BURM7 RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|226709778|sp|A2S4R7|IHFB_BURM9 RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|226709779|sp|A1V6M0|IHFB_BURMS RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|226709780|sp|A3NXW8|IHFB_BURP0 RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|226709781|sp|A3NC29|IHFB_BURP6 RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|52210538|emb|CAH36521.1| integration host factor beta-subunit [Burkholderia pseudomallei
           K96243]
 gi|52428209|gb|AAU48802.1| integration host factor, beta subunit [Burkholderia mallei ATCC
           23344]
 gi|76580281|gb|ABA49756.1| integration host factor, beta subunit [Burkholderia pseudomallei
           1710b]
 gi|121227345|gb|ABM49863.1| integration host factor, beta subunit [Burkholderia mallei SAVP1]
 gi|124293038|gb|ABN02307.1| integration host factor, beta subunit [Burkholderia mallei NCTC
           10229]
 gi|126220888|gb|ABN84394.1| integration host factor, beta subunit [Burkholderia pseudomallei
           668]
 gi|126225833|gb|ABN89373.1| integration host factor, beta subunit [Burkholderia pseudomallei
           1106a]
 gi|126244252|gb|ABO07345.1| integration host factor, beta subunit [Burkholderia mallei NCTC
           10247]
 gi|134250783|gb|EBA50862.1| integration host factor, beta subunit [Burkholderia pseudomallei
           305]
 gi|147745436|gb|EDK52516.1| integration host factor, beta subunit [Burkholderia mallei FMH]
 gi|147750780|gb|EDK57849.1| integration host factor, beta subunit [Burkholderia mallei JHU]
 gi|148029281|gb|EDK87186.1| integration host factor, beta subunit [Burkholderia mallei
           2002721280]
 gi|157987816|gb|EDO95581.1| integration host factor, beta subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160698060|gb|EDP88030.1| integration host factor, beta subunit [Burkholderia mallei ATCC
           10399]
 gi|169652337|gb|EDS85030.1| integration host factor, beta subunit [Burkholderia pseudomallei
           S13]
 gi|184211629|gb|EDU08672.1| integration host factor, beta subunit [Burkholderia pseudomallei
           1655]
 gi|217395938|gb|EEC35955.1| integration host factor, beta subunit [Burkholderia pseudomallei
           576]
 gi|237504544|gb|ACQ96862.1| integration host factor, beta subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238524131|gb|EEP87566.1| integration host factor, beta subunit [Burkholderia mallei GB8
           horse 4]
 gi|242140844|gb|EES27246.1| integration host factor, beta subunit [Burkholderia pseudomallei
           1106b]
 gi|243064226|gb|EES46412.1| integration host factor, beta subunit [Burkholderia mallei PRL-20]
 gi|254216951|gb|EET06335.1| integration host factor, beta subunit [Burkholderia pseudomallei
           1710a]
          Length = 107

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 60/103 (58%), Gaps = 3/103 (2%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + D+  +G  I+I  F +F + ++ +RV
Sbjct: 1   MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN ++ ++V++  + V  FK    L++R+  D R  +  K+D
Sbjct: 61  GRNPKSGEKVQVPEKHVPHFKPGKELRERV--DGRAGEPLKND 101


>gi|23013445|ref|ZP_00053339.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magnetotacticum MS-1]
          Length = 90

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV +++   GLS+ D+ + V  +F  I  +   G+ +++  F TF V  + +  G
Sbjct: 1  MNKNDLVTAVAGAAGLSKADAAKAVDGVFEAITSALKGGDEVRLVGFGTFAVASRAASEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +++KI   +   FKA   LK  I
Sbjct: 61 RNPRTGEKIKIPASKQPKFKAGKGLKDGI 89


>gi|309972413|gb|ADO95614.1| DNA-binding protein HU-alpha [Haemophilus influenzae R2846]
          Length = 90

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+    L++K +   +    + I  S  +GE +++  F TF V ++ +R G
Sbjct: 1  MNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKKGEPVQLIGFGTFKVNERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I   +V  F +   LK  I
Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAI 89


>gi|301308636|ref|ZP_07214588.1| putative virulence-associated protein [Bacteroides sp. 20_3]
 gi|300833160|gb|EFK63778.1| putative virulence-associated protein [Bacteroides sp. 20_3]
          Length = 91

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +LV+S+ +E GL +      V  L   +      GE+I +  F +F   Q+  R+ 
Sbjct: 1  MNRGELVQSLVEETGLPKNVVRTVVNALPTVVAKGMREGESISMKGFGSFVPWQQSERLA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +EV I PR  V FKA S L K +
Sbjct: 61 RNPKTGEEVMITPRVSVKFKAGSDLLKEL 89


>gi|256830230|ref|YP_003158958.1| histone family protein DNA-binding protein [Desulfomicrobium
          baculatum DSM 4028]
 gi|256579406|gb|ACU90542.1| histone family protein DNA-binding protein [Desulfomicrobium
          baculatum DSM 4028]
          Length = 90

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 55/89 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  ++++ GL++ ++ R +T     + ++ V  + + ++ F TF V+++ +R G
Sbjct: 1  MTKAELVAKMAEKAGLTKANAERALTEFLKAVQETLVTEKKMTLTGFGTFVVEERQARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E+KI   +VV F+    LK  I
Sbjct: 61 RNPRTGEELKIPACKVVKFRPGKELKDAI 89


>gi|227879097|ref|ZP_03996986.1| DNA-binding protein HU [Lactobacillus crispatus JV-V01]
 gi|256843086|ref|ZP_05548574.1| DNA-binding protein II HB [Lactobacillus crispatus 125-2-CHN]
 gi|256850262|ref|ZP_05555691.1| DNA-binding protein II HB [Lactobacillus crispatus MV-1A-US]
 gi|262046346|ref|ZP_06019308.1| DNA-binding protein II HB [Lactobacillus crispatus MV-3A-US]
 gi|293379769|ref|ZP_06625901.1| DNA-binding protein HU [Lactobacillus crispatus 214-1]
 gi|295692882|ref|YP_003601492.1| DNA-binding protein hu [Lactobacillus crispatus ST1]
 gi|227861338|gb|EEJ68968.1| DNA-binding protein HU [Lactobacillus crispatus JV-V01]
 gi|256614506|gb|EEU19707.1| DNA-binding protein II HB [Lactobacillus crispatus 125-2-CHN]
 gi|256712899|gb|EEU27891.1| DNA-binding protein II HB [Lactobacillus crispatus MV-1A-US]
 gi|260573217|gb|EEX29775.1| DNA-binding protein II HB [Lactobacillus crispatus MV-3A-US]
 gi|290923678|gb|EFE00549.1| DNA-binding protein HU [Lactobacillus crispatus 214-1]
 gi|295030988|emb|CBL50467.1| DNA-binding protein HU [Lactobacillus crispatus ST1]
          Length = 91

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV  ++ +  L++K     V  + + I ++  +GE +++  F TF V+ + +R GRN
Sbjct: 4  KAELVSEVASKTKLTKKQVANTVDAILDSIQENLAKGEKVQLIGFGTFEVRHRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT  E++I    V  FK    LK
Sbjct: 64 PQTGDEIEIPASEVPAFKPGKALK 87


>gi|119469331|ref|ZP_01612270.1| DNA-binding protein HU-alpha (HU-2) [Alteromonadales bacterium
          TW-7]
 gi|119447195|gb|EAW28464.1| DNA-binding protein HU-alpha (HU-2) [Alteromonadales bacterium
          TW-7]
          Length = 89

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  ++K   L++KDS   +T++   I  S   G+ ++I+ F TF +    +R G
Sbjct: 1  MNKTQLIAEMAKHSELTKKDSQAALTSIQKVITKSLSEGDQVQINGFGTFALSYYPARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I+     VFK +  LK R+
Sbjct: 61 RNPQTGETIEIEGANKAVFKPAKALKDRL 89


>gi|156740686|ref|YP_001430815.1| histone family protein DNA-binding protein [Roseiflexus
          castenholzii DSM 13941]
 gi|156232014|gb|ABU56797.1| histone family protein DNA-binding protein [Roseiflexus
          castenholzii DSM 13941]
          Length = 92

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D +K++++    S+K++   V      I ++  RGE + ++ F TF V+Q+ +R G
Sbjct: 1  MQKTDFIKAVAERANRSQKETKEIVDAALEVITEALKRGEKVTLTGFGTFEVRQRQAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N QT  ++ I   R   F ASS LK  + +
Sbjct: 61 VNPQTRSKIHIPATRTPGFSASSTLKNAVKE 91


>gi|308185911|ref|YP_003930042.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea
          vagans C9-1]
 gi|308056421|gb|ADO08593.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea
          vagans C9-1]
          Length = 93

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 47/91 (51%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K + +S L+  I+ +  +S+  + R +      + D+   G+ + +  F TF V+ + +R
Sbjct: 2  KRVNKSQLIDKIAADADISKAAAGRVLDAFMGSVSDALKEGDEVALVGFGTFSVRDRAAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN QT +E+ I   +V  F+A   LK  +
Sbjct: 62 TGRNPQTGKEITIPAGKVPGFRAGKALKDAV 92


>gi|228912344|ref|ZP_04076038.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
 gi|228847292|gb|EEM92252.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
          Length = 93

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K ++++  L++KD+      + + I  +    E ++I  F TF V+++ +R G
Sbjct: 4  MNKTELTKVVAEKAVLTQKDADAATQAVLDTITSALANEEKVQILGFGTFEVRERSARTG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +   FKA   LK+ +
Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKELKEAV 92


>gi|85714140|ref|ZP_01045129.1| integration host factor beta subunit [Nitrobacter sp. Nb-311A]
 gi|85699266|gb|EAQ37134.1| integration host factor beta subunit [Nitrobacter sp. Nb-311A]
          Length = 101

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 10/106 (9%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV+ I++    L ++D    V  + +EI  +  RG+ +++  F  F VK + +R 
Sbjct: 1   MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
           GRN +T + V +D + V  FK    +++R+         N+++ TS
Sbjct: 61  GRNPRTGEHVPVDQKSVPFFKTGKEMRERL---------NRENATS 97


>gi|332981382|ref|YP_004462823.1| nucleoid protein Hbs [Mahella australiensis 50-1 BON]
 gi|332699060|gb|AEE96001.1| bacterial nucleoid protein Hbs [Mahella australiensis 50-1 BON]
          Length = 91

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 51/86 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++  +++KD+ + +    + + ++ V G+ +++  F TF V  + +R G
Sbjct: 1  MNKAELIAKMAEKGEMTKKDAEKALNAFVDAVTEALVNGDTVQLVGFGTFRVSPRSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          R+ QT +E+ I   +  VFKA   LK
Sbjct: 61 RDPQTQKEIMIPASKAPVFKAGKALK 86


>gi|332535436|ref|ZP_08411223.1| DNA-binding protein HU-beta [Pseudoalteromonas haloplanktis
          ANT/505]
 gi|332035160|gb|EGI71672.1| DNA-binding protein HU-beta [Pseudoalteromonas haloplanktis
          ANT/505]
          Length = 91

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I+ +  +S+  +TR +      +  S   G+++ +  F TF VK++ +R G
Sbjct: 1  MNKAQLVEKIATDAEISKAAATRALDAFTGAVTSSLKEGDSVALVGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I    +  FKA   LK ++
Sbjct: 61 RNPQTGAEIQIAAATIPSFKAGKGLKDQV 89


>gi|218710171|ref|YP_002417792.1| DNA-binding protein HU-beta [Vibrio splendidus LGP32]
 gi|218323190|emb|CAV19367.1| DNA-binding protein HU-beta [Vibrio splendidus LGP32]
          Length = 97

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 49/89 (55%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           KT+ ++ LV+SI++   +S+  + R +      +  +   G+ + +  F TF V+ + +
Sbjct: 5  GKTVNKTQLVESIAENADISKASAGRALDAFIEAVGTTLQSGDQVALVGFGTFSVRTRAA 64

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          R GRN +T +E++I   +V  FKA   LK
Sbjct: 65 RTGRNPKTGEEIQIAEAKVPGFKAGKALK 93


>gi|114565657|ref|YP_752811.1| DNA-binding protein HU [Syntrophomonas wolfei subsp. wolfei str.
          Goettingen]
 gi|114336592|gb|ABI67440.1| bacterial nucleoid protein Hbs [Syntrophomonas wolfei subsp.
          wolfei str. Goettingen]
          Length = 90

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  ++ + G+++KD  + V   F+ +       + +++  F TF V+ + +R G
Sbjct: 1  MNKTELVGQVAAKTGMTKKDVEKVVNAFFDTVEGVLKEDDKVQLIGFGTFEVRARQARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  FKA   LK  ++
Sbjct: 61 RNPQTGEEINIPATKVPAFKAGKALKDALV 90


>gi|154248715|ref|YP_001409540.1| histone family protein DNA-binding protein [Fervidobacterium
          nodosum Rt17-B1]
 gi|154152651|gb|ABS59883.1| histone family protein DNA-binding protein [Fervidobacterium
          nodosum Rt17-B1]
          Length = 91

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          LV +++++  L +KD    V  +F  I ++  +GE +++  F TF VK+   R G N +T
Sbjct: 6  LVNAVAEKTQLKKKDVKAVVDAVFETIAEALEKGEKVQLVDFGTFEVKKMAGRTGVNPRT 65

Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93
            ++KI  R+V  F+   +LK ++
Sbjct: 66 KSKIKIPSRKVPKFRPGKVLKSKV 89


>gi|113461674|ref|YP_719743.1| DNA-binding protein HU [Haemophilus somnus 129PT]
 gi|112823717|gb|ABI25806.1| DNA-binding protein HU [Haemophilus somnus 129PT]
          Length = 91

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+    L++K +   +      I  S   GEA+++  F TF V ++ +R G
Sbjct: 1  MNKTDLIDAIASAAELNKKQAKAALEATLEAISGSLKAGEAVQLIGFGTFKVNERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I   +V  F A   LK  +
Sbjct: 61 RNPQTGAEIQIAASKVPAFVAGKALKDSV 89


>gi|87198191|ref|YP_495448.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans
          DSM 12444]
 gi|87133872|gb|ABD24614.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans
          DSM 12444]
          Length = 93

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L+++++KE  G+  ++  R V   F+EI      G  +++  F  F  +++ +R 
Sbjct: 1  MIRSELLQALAKESPGMRSEEIERVVDVFFDEIAKRLAEGGRVELRGFGAFSTRERDARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V++  ++V  FKA   +++R+  D
Sbjct: 61 GRNPRTGETVEVPGKKVPYFKAGKEMRQRLNAD 93


>gi|73542253|ref|YP_296773.1| integration host factor subunit beta [Ralstonia eutropha JMP134]
 gi|123760154|sp|Q46Y54|IHFB_RALEJ RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|72119666|gb|AAZ61929.1| Integration host factor, beta subunit [Ralstonia eutropha JMP134]
          Length = 137

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 4/112 (3%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV+ ++  F  L  +D+   V T+ + + D+   G  I+I  F +F + ++  RV
Sbjct: 1   MTKSELVEKLAARFPQLLLRDADISVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI---MDDMRGRKCNKDDVTSPSG 112
           GRN ++ + V +  +RV  FKA   L++R+   +    G   N     +PSG
Sbjct: 61  GRNPKSGERVLVPEKRVPHFKAGKELRERVDRNLTPSSGGSGNGHLTGTPSG 112


>gi|313113523|ref|ZP_07799112.1| DNA-binding protein HU [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624250|gb|EFQ07616.1| DNA-binding protein HU [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 89

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DL+  ++    +S+K + + V  +F  +  +   GE I IS F TF ++++  R G
Sbjct: 1  MTKTDLIAQVAANTEMSKKSAEQAVNAVFEALSKAMSEGEKITISGFGTFEMRERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N +T + + I   R +VFK    LK
Sbjct: 61 INPRTREPITIAASRSIVFKPGKSLK 86


>gi|318042379|ref|ZP_07974335.1| DNA-binding protein HU [Synechococcus sp. CB0101]
          Length = 91

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ D  + V    + I DS V G+ + I  F +F  +++ +R G
Sbjct: 1  MNKADLVNLVAARTELTKTDVAQVVDAAIDTIIDSVVEGKKVSILGFGSFEPRERSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T  ++KI  +RV  F A  + K R+
Sbjct: 61 LNPKTGDKIKIPAKRVPAFTAGKLFKDRV 89


>gi|251793493|ref|YP_003008222.1| DNA-binding protein HU-beta [Aggregatibacter aphrophilus NJ8700]
 gi|247534889|gb|ACS98135.1| DNA-binding protein HU-beta [Aggregatibacter aphrophilus NJ8700]
          Length = 90

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+    L++K +   +      I  S  +GEA+++  F TF V  + +R G
Sbjct: 1  MNKTDLIDAIASSAELNKKQAKAALEATLEAITGSLKKGEAVQLIGFGTFKVNARKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT  E+KI   +V  F +   LK
Sbjct: 61 RNPQTGAEIKIAASKVPAFVSGKALK 86


>gi|83945692|ref|ZP_00958037.1| integration host factor beta subunit [Oceanicaulis alexandrii
          HTCC2633]
 gi|83850893|gb|EAP88753.1| integration host factor beta subunit [Oceanicaulis alexandrii
          HTCC2633]
          Length = 94

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ +++E   L +KD  R V T+  EI  +  RG+ +++  F  F V+ +  R 
Sbjct: 1  MIKSELIEKLAEENPHLYQKDLERVVNTVLEEITQALERGDRVELRGFGAFSVRNRPPRQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  + V  FK    L++R+
Sbjct: 61 GRNPRTGEPVSVKEKHVPFFKTGKELRERV 90


>gi|90421919|ref|YP_530289.1| integration host factor subunit beta [Rhodopseudomonas palustris
          BisB18]
 gi|123275679|sp|Q21CB6|IHFB_RHOPB RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|90103933|gb|ABD85970.1| integration host factor, beta subunit [Rhodopseudomonas palustris
          BisB18]
          Length = 101

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  + +EI  +  RG+ +++  F  F VK + +R 
Sbjct: 1  MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T   V +D + V  FK    +++R+  D
Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRD 93


>gi|325579267|ref|ZP_08149223.1| DNA-binding protein HU [Haemophilus parainfluenzae ATCC 33392]
 gi|301155512|emb|CBW14979.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Haemophilus parainfluenzae T3T1]
 gi|325159502|gb|EGC71636.1| DNA-binding protein HU [Haemophilus parainfluenzae ATCC 33392]
          Length = 90

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+    L++K +   +      I  S  +GE +++  F TF V ++ +R G
Sbjct: 1  MNKTDLIDAIASAAELNKKQAKAALEATLAAITGSLKKGEPVQLIGFGTFKVNKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E+KI   +V  F +   LK  I
Sbjct: 61 RNPQTGAEIKIAASKVPAFVSGKALKDAI 89


>gi|153812530|ref|ZP_01965198.1| hypothetical protein RUMOBE_02929 [Ruminococcus obeum ATCC 29174]
 gi|149831455|gb|EDM86543.1| hypothetical protein RUMOBE_02929 [Ruminococcus obeum ATCC 29174]
          Length = 91

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++KE  LS+KD    + +  + +     +G  I++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAMAKETNLSKKDVEAVLKSFTDVVASELKKGGKIQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + +KI   +   FKA   LK
Sbjct: 61 RNPQTGETMKIAASKAPKFKAGKALK 86


>gi|119897364|ref|YP_932577.1| integration host factor subunit beta [Azoarcus sp. BH72]
 gi|166918539|sp|A1K4D5|IHFB_AZOSB RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|119669777|emb|CAL93690.1| probable integration host factor, beta-subunit [Azoarcus sp.
          BH72]
          Length = 94

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  ++  F  L  KD+   V  + + + D+  RG+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIAQLAARFPQLVAKDADYAVKMILDAMSDALARGDRIEIRGFGSFALNYRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V +  + V  FKA   L++R+
Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKELRERV 90


>gi|146337267|ref|YP_001202315.1| integration host factor subunit beta [Bradyrhizobium sp. ORS278]
 gi|166918541|sp|A4YJI9|IHFB_BRASO RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|146190073|emb|CAL74065.1| Integration host factor beta-subunit (IHF-beta) [Bradyrhizobium
          sp. ORS278]
          Length = 105

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  + +EI  +  RG+ +++  F  F VK + +R 
Sbjct: 1  MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T   V +D + V  FK    +++R+  D
Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRD 93


>gi|320353405|ref|YP_004194744.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
 gi|320121907|gb|ADW17453.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
          Length = 94

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 50/85 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++KE  LS+  + + V ++F+ I ++   G+ + ++ F TF    + +R G
Sbjct: 1  MNKTELIDKVAKESALSKSAAEQVVNSVFSAIAEAMKTGDKVTLAGFGTFSTADRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN Q+ +++ I  ++ V FK  S L
Sbjct: 61 RNPQSGEKIAIPAKKAVKFKPGSKL 85


>gi|113953503|ref|YP_731390.1| DNA-binding protein HU [Synechococcus sp. CC9311]
 gi|113880854|gb|ABI45812.1| DNA-binding protein HU [Synechococcus sp. CC9311]
          Length = 91

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ D +  V    + I DS V G+ + I  F +F  +++ +R G
Sbjct: 1  MNKADLVNLVAARTELTKTDVSLVVDAAIDTIIDSVVEGKKVSILGFGSFEPRERSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T +++KI  +RV  F A  + K R+
Sbjct: 61 LNPKTGEKIKIPAKRVPAFTAGKMFKDRV 89


>gi|125717537|ref|YP_001034670.1| DNA-binding protein HU [Streptococcus sanguinis SK36]
 gi|323352711|ref|ZP_08087681.1| DNA-binding protein HU [Streptococcus sanguinis VMC66]
 gi|125497454|gb|ABN44120.1| DNA-binding protein HU, putative [Streptococcus sanguinis SK36]
 gi|322121747|gb|EFX93493.1| DNA-binding protein HU [Streptococcus sanguinis VMC66]
 gi|324990641|gb|EGC22577.1| DNA-binding protein HU [Streptococcus sanguinis SK353]
 gi|324993379|gb|EGC25299.1| DNA-binding protein HU [Streptococcus sanguinis SK405]
 gi|324995308|gb|EGC27220.1| DNA-binding protein HU [Streptococcus sanguinis SK678]
 gi|325688248|gb|EGD30267.1| DNA-binding protein HU [Streptococcus sanguinis SK72]
 gi|325690171|gb|EGD32175.1| DNA-binding protein HU [Streptococcus sanguinis SK115]
 gi|325694095|gb|EGD36013.1| DNA-binding protein HU [Streptococcus sanguinis SK150]
 gi|325697097|gb|EGD38984.1| DNA-binding protein HU [Streptococcus sanguinis SK160]
 gi|327458737|gb|EGF05085.1| DNA-binding protein HU [Streptococcus sanguinis SK1057]
 gi|327461654|gb|EGF07985.1| DNA-binding protein HU [Streptococcus sanguinis SK1]
 gi|327468999|gb|EGF14471.1| DNA-binding protein HU [Streptococcus sanguinis SK330]
 gi|327473374|gb|EGF18794.1| DNA-binding protein HU [Streptococcus sanguinis SK408]
 gi|327489507|gb|EGF21300.1| DNA-binding protein HU [Streptococcus sanguinis SK1058]
 gi|328945552|gb|EGG39703.1| DNA-binding protein HU [Streptococcus sanguinis SK1087]
 gi|332361741|gb|EGJ39545.1| DNA-binding protein HU [Streptococcus sanguinis SK1056]
 gi|332362906|gb|EGJ40699.1| DNA-binding protein HU [Streptococcus sanguinis SK49]
 gi|332363445|gb|EGJ41228.1| DNA-binding protein HU [Streptococcus sanguinis SK355]
 gi|332366058|gb|EGJ43814.1| DNA-binding protein HU [Streptococcus sanguinis SK1059]
          Length = 91

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 49/84 (58%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F  + +   +GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E+KI   +V  FKA   LK
Sbjct: 64 PQTGKEIKIAASKVPAFKAGKALK 87


>gi|78224249|ref|YP_385996.1| histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
 gi|78195504|gb|ABB33271.1| Histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
          Length = 70

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%)

Query: 28 FVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASS 87
           V  L  +I  +  R + IKI+ F  F VK+K  R GRN QT + + I  RRV+ FK S+
Sbjct: 1  MVEVLLEQIKKTLEREDRIKITGFGNFEVKRKADRRGRNPQTGEALTIQSRRVLTFKPSA 60

Query: 88 ILKKRI 93
          +LK  I
Sbjct: 61 VLKNSI 66


>gi|288818327|ref|YP_003432675.1| integration host factor alpha subunit [Hydrogenobacter
          thermophilus TK-6]
 gi|288787727|dbj|BAI69474.1| integration host factor alpha subunit [Hydrogenobacter
          thermophilus TK-6]
 gi|308751924|gb|ADO45407.1| histone family protein DNA-binding protein [Hydrogenobacter
          thermophilus TK-6]
          Length = 100

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 2/87 (2%)

Query: 5  ITRSDLVKSISKEF--GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +TR  +V  + K+   GLS+K     +  +F++I  + V G+ +KIS F TF V+    R
Sbjct: 1  MTRKSIVDDLWKDGNSGLSKKTLYSIINYIFDQINQALVEGQEVKISGFGTFRVRHTKGR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSIL 89
           GRN +T +   I P+R V  K S  L
Sbjct: 61 RGRNPRTGEMRVIHPKRTVQLKPSKKL 87


>gi|134095741|ref|YP_001100816.1| integration host factor subunit beta [Herminiimonas arsenicoxydans]
 gi|152980763|ref|YP_001354357.1| integration host factor subunit beta [Janthinobacterium sp.
           Marseille]
 gi|166918551|sp|A4G858|IHFB_HERAR RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|166918552|sp|A6T1G0|IHFB_JANMA RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|133739644|emb|CAL62695.1| Integration host factor subunit beta (IHF-beta) [Herminiimonas
           arsenicoxydans]
 gi|151280840|gb|ABR89250.1| integration host factor beta-subunit [Janthinobacterium sp.
           Marseille]
          Length = 101

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 2/102 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+  +++ +  L  KD+   V T+ + + D+   G+ I+I  F +F +  +  R+
Sbjct: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMSDALATGQRIEIRGFGSFALNSRPPRI 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           GRN ++  +V +  +RV  FK    L++R+ D M G+   +D
Sbjct: 61  GRNPKSGDKVMVPEKRVPHFKPGKQLRERV-DAMVGQPIIED 101


>gi|325955263|ref|YP_004238923.1| histone family protein DNA-binding protein [Weeksella virosa DSM
          16922]
 gi|323437881|gb|ADX68345.1| histone family protein DNA-binding protein [Weeksella virosa DSM
          16922]
          Length = 92

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 50/85 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+ + G+S++ + + + +    + ++  +GE + +  F TF   ++ +R G
Sbjct: 1  MNKSELIDAIAADAGISKEAAKKALNSFTTNVTNALAKGEKVALVGFGTFSTSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N QT +E++I  + V  FKA S L
Sbjct: 61 INPQTKKEIQIAAKTVAKFKAGSEL 85


>gi|299066877|emb|CBJ38072.1| Integration host factor subunit beta (IHF-beta) [Ralstonia
          solanacearum CMR15]
          Length = 140

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 4  TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+S+LV+ ++  F  L  +D+   V T+ + + D+   G  I+I  F +F + ++  R
Sbjct: 2  PMTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          VGRN ++ ++V +  +RV  FKA   L++R+
Sbjct: 62 VGRNPKSGEKVLVPEKRVPHFKAGKELRERV 92


>gi|167621360|ref|ZP_02389991.1| Bacterial nucleoid DNA-binding protein [Burkholderia
          thailandensis Bt4]
          Length = 90

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  ++ E GL++ DS   +  +   I  +  +G  + ++ F  F V  + +R G
Sbjct: 1  MNKADLINHVAAETGLTKADSGFALEAVLEGITKALRKGGTVTLTGFGVFSVGARAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T +E+KI   +   FKA   LK  +
Sbjct: 61 RNPATGEEIKIPASKAPKFKAGKGLKDAV 89


>gi|87121305|ref|ZP_01077195.1| DNA-binding protein HU-beta [Marinomonas sp. MED121]
 gi|86163462|gb|EAQ64737.1| DNA-binding protein HU-beta [Marinomonas sp. MED121]
          Length = 90

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    LS+  +   +      I  +  +G+ + +  F TF VK + +R G
Sbjct: 1  MNKSELIDAIAASADLSKAAAGNALDATLEAITGALAKGDQVTLVGFGTFAVKDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  FKA   LK  +
Sbjct: 61 RNPQTGEEIAIKAAKVPGFKAGKGLKDSV 89


>gi|322418662|ref|YP_004197885.1| histone family protein DNA-binding protein [Geobacter sp. M18]
 gi|320125049|gb|ADW12609.1| histone family protein DNA-binding protein [Geobacter sp. M18]
          Length = 91

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++E  L++ D+ + +T + + + D    G+ + +  F TF V ++ +R G
Sbjct: 1  MNKAELVSAIAEEAQLTKVDADKALTGILDALTDCLAAGDKVTLVGFGTFSVAERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +N QT ++++I       FK  + LK  I
Sbjct: 61 QNPQTGKKIEIAASTAPKFKPGNTLKALI 89


>gi|322436189|ref|YP_004218401.1| histone family protein DNA-binding protein [Acidobacterium sp.
          MP5ACTX9]
 gi|321163916|gb|ADW69621.1| histone family protein DNA-binding protein [Acidobacterium sp.
          MP5ACTX9]
          Length = 93

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M   + + DL++ + +  GL R  +   V  +F  +  S V GE I++  F  F VK + 
Sbjct: 1  MRHDLIKQDLIQRVVERTGLVRTKAEAAVDAIFESMKQSLVEGERIELRGFGVFTVKPRK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSIL 89
          + VGRN +T  EV I P + V FK    L
Sbjct: 61 TGVGRNPRTGAEVSIAPGKAVRFKPGKDL 89


>gi|291616552|ref|YP_003519294.1| HupB [Pantoea ananatis LMG 20103]
 gi|317047178|ref|YP_004114826.1| histone family protein DNA-binding protein [Pantoea sp. At-9b]
 gi|291151582|gb|ADD76166.1| HupB [Pantoea ananatis LMG 20103]
 gi|316948795|gb|ADU68270.1| histone family protein DNA-binding protein [Pantoea sp. At-9b]
 gi|327392984|dbj|BAK10406.1| DNA-binding protein HU-beta HupB [Pantoea ananatis AJ13355]
          Length = 93

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R +      + D+   G+ + +  F TF V+++ +R G
Sbjct: 4  VNKSQLIDKIAADADISKAAAGRVLDAFMGSVSDALKGGDEVALVGFGTFSVRERAARTG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F+A   LK  +
Sbjct: 64 RNPQTGKEITIPAGKVPGFRAGKALKDAV 92


>gi|268593005|ref|ZP_06127226.1| DNA-binding protein HU [Providencia rettgeri DSM 1131]
 gi|291311478|gb|EFE51931.1| DNA-binding protein HU [Providencia rettgeri DSM 1131]
          Length = 90

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++   L++  +   + +  N I ++  +GE +++  F TF V  + +R G
Sbjct: 1  MNKTELVDAIAESADLTKVQAKAALESTLNAISETLKKGEQVQLVGFGTFKVSHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I    V  F A   LK+ +
Sbjct: 61 RNPQTKAEIQIPATTVPAFSAGKALKEAV 89


>gi|77362371|ref|YP_341945.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas
          haloplanktis TAC125]
 gi|76877282|emb|CAI89499.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas
          haloplanktis TAC125]
          Length = 91

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I+ +  +S+  +TR +      +  S   G+++ +  F TF VK++ +R G
Sbjct: 1  MNKAQLVEKIATDAEISKAAATRALDAFTGAVTSSLKEGDSVALVGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I    +  FKA   LK ++
Sbjct: 61 RNPQTGAEIQIAAATIPSFKAGKGLKDQV 89


>gi|241662464|ref|YP_002980824.1| integration host factor subunit beta [Ralstonia pickettii 12D]
 gi|309781046|ref|ZP_07675784.1| integration host factor, beta subunit [Ralstonia sp. 5_7_47FAA]
 gi|240864491|gb|ACS62152.1| integration host factor, beta subunit [Ralstonia pickettii 12D]
 gi|308920112|gb|EFP65771.1| integration host factor, beta subunit [Ralstonia sp. 5_7_47FAA]
          Length = 142

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 4  TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+S+LV+ ++  F  L  +D+   V T+ + + D+   G  I+I  F +F + ++  R
Sbjct: 2  PMTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          VGRN ++ ++V +  +RV  FKA   L++R+
Sbjct: 62 VGRNPKSGEKVLVPEKRVPHFKAGKELRERV 92


>gi|319947464|ref|ZP_08021696.1| DNA-binding protein HU [Streptococcus australis ATCC 700641]
 gi|315419725|gb|ADU15832.1| histone-like protein [Streptococcus parasanguinis]
 gi|319746404|gb|EFV98665.1| DNA-binding protein HU [Streptococcus australis ATCC 700641]
          Length = 91

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 49/85 (57%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + +   +GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90
          N QT +E+KI   +V  FKA   LK
Sbjct: 63 NPQTGKEIKIAASKVPAFKAGKALK 87


>gi|239629128|ref|ZP_04672159.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239519274|gb|EEQ59140.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47FAA]
          Length = 91

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  LS+KD+ + V    + + +  V+G  +++  F TF V ++ +R G
Sbjct: 1  MNKTELIAAVAEKAELSKKDAEKAVKAFTDAVAEELVKGGKVQLVGFGTFEVAERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   + I   +   FKA   LK  +
Sbjct: 61 RNPKTGNAMPIPASKTPKFKAGKALKDEV 89


>gi|332879942|ref|ZP_08447627.1| DNA-binding protein HU-beta [Capnocytophaga sp. oral taxon 329
          str. F0087]
 gi|332682153|gb|EGJ55065.1| DNA-binding protein HU-beta [Capnocytophaga sp. oral taxon 329
          str. F0087]
          Length = 91

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 50/85 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+ E GLS+ D+ + V   F+ +  +   G+ + I  F  + V +K +R  
Sbjct: 1  MNKTELIDAIAAEAGLSKVDAKKAVEAFFSSVEKALTNGDKVSIVGFGAWSVAEKEARDA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN +T + +K+  ++VV FKA + L
Sbjct: 61 RNPRTGEVIKVPAKKVVKFKAGTEL 85


>gi|255524045|ref|ZP_05391007.1| histone family protein DNA-binding protein [Clostridium
          carboxidivorans P7]
 gi|296186901|ref|ZP_06855302.1| putative integration host factor, beta subunit [Clostridium
          carboxidivorans P7]
 gi|255512332|gb|EET88610.1| histone family protein DNA-binding protein [Clostridium
          carboxidivorans P7]
 gi|296048615|gb|EFG88048.1| putative integration host factor, beta subunit [Clostridium
          carboxidivorans P7]
          Length = 91

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ SI+++  L++KD    +      + ++  +G+ +++  F TF  +++ +RVG
Sbjct: 1  MNKSELIASIAEKSKLTKKDVEVVLKGFIESVEETLEKGDKVQLVGFGTFETRKRAARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E++I    V VFKA    K ++
Sbjct: 61 RNPRTKEEIEIPESTVPVFKAGKEFKDKV 89


>gi|227485001|ref|ZP_03915317.1| DNA-binding protein HU [Anaerococcus lactolyticus ATCC 51172]
 gi|227236998|gb|EEI87013.1| DNA-binding protein HU [Anaerococcus lactolyticus ATCC 51172]
          Length = 92

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ SIS++ GL + +S + +      + ++ V+G+ +++  F TF V+ + +R G
Sbjct: 1  MNKSELLNSISEKSGLKKVESEKALNAFLETVQEALVKGDKVQLVGFGTFEVRDRKAREG 60

Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93
          RN +  +EV +I   +  VFKA   LK+ +
Sbjct: 61 RNPRKPEEVIQIPASKAPVFKAGKTLKEAV 90


>gi|295101017|emb|CBK98562.1| Bacterial nucleoid DNA-binding protein [Faecalibacterium
          prausnitzii L2-6]
          Length = 89

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DL+  ++    +S+K +   V   F  +  +   GE I IS F TF V+++  R G
Sbjct: 1  MTKTDLIAQVAANTEMSKKSAEMAVNAAFEALGKAMAEGEKISISGFGTFEVRERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N +T + + I   + +VFK    LK
Sbjct: 61 INPRTREPITIAASKSIVFKPGKALK 86


>gi|295134367|ref|YP_003585043.1| histone-like DNA-binding protein [Zunongwangia profunda SM-A87]
 gi|294982382|gb|ADF52847.1| histone-like DNA-binding protein [Zunongwangia profunda SM-A87]
          Length = 90

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++ G+S+  + + + +    I  S  +G+ + +  F ++ V ++ +R G
Sbjct: 1  MNKTDLIDAMAEDAGISKAAAKKALESFLGGIETSLKKGDRVSLVGFGSWSVSKRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + +KI  + VV FKA + L+K +
Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGADLQKAV 89


>gi|225375853|ref|ZP_03753074.1| hypothetical protein ROSEINA2194_01485 [Roseburia inulinivorans
          DSM 16841]
 gi|225212288|gb|EEG94642.1| hypothetical protein ROSEINA2194_01485 [Roseburia inulinivorans
          DSM 16841]
          Length = 91

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++  LS+KD+   +    + + +   +GE I++  F TF V ++  R G
Sbjct: 1  MNKAELVAAMAEKAELSKKDAEAALKAFTDVVAEELKKGEKIQLVGFGTFEVSERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN Q+ +E+ I   +   FKA   LK
Sbjct: 61 RNPQSGKEMVIPASKAPKFKAGKALK 86


>gi|157364264|ref|YP_001471031.1| histone family protein DNA-binding protein [Thermotoga lettingae
          TMO]
 gi|157314868|gb|ABV33967.1| histone family protein DNA-binding protein [Thermotoga lettingae
          TMO]
          Length = 90

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV  +SK+ GL +KD  + V  +F+ + D+  +GE +++  F +F V++   R G
Sbjct: 1  MNKKELVDKVSKKAGLKKKDVKKVVDMVFDTVTDALAKGEKVQLVGFGSFEVRKAAQRKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N QT + + I  R+V  FK    LK+++
Sbjct: 61 VNPQTKKPITIPSRKVPKFKPGKALKEKV 89


>gi|53805229|ref|YP_113051.1| DNA-binding protein HU-beta [Methylococcus capsulatus str. Bath]
 gi|53758990|gb|AAU93281.1| DNA-binding protein HU-beta [Methylococcus capsulatus str. Bath]
          Length = 90

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+++I+    L++ D+ R +  + + I D+  +G+ + +  F +F VK++  R G
Sbjct: 1  MNKAELIEAIADAANLTKADAGRALDAVIDAITDALKKGDTVSLVGFGSFAVKERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   + I   ++  FK    LK  +
Sbjct: 61 RNPQTGDSITIKAAKIPSFKCGKALKDAV 89


>gi|253584243|ref|ZP_04861441.1| DNA-binding protein HU [Fusobacterium varium ATCC 27725]
 gi|251834815|gb|EES63378.1| DNA-binding protein HU [Fusobacterium varium ATCC 27725]
          Length = 90

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V+  +K  G ++K++ R V      + D+ V+G+ I    +  + VK++ +R  
Sbjct: 1  MTKKEFVELYAKNGGFTKKEAERAVNLFLASVEDTLVKGDNITFVGWGKWEVKERAAREV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QTN++++I+ ++ V FK    L  +I
Sbjct: 61 RNPQTNKKMRIEAKKAVKFKVGKTLADKI 89


>gi|210613799|ref|ZP_03289913.1| hypothetical protein CLONEX_02124 [Clostridium nexile DSM 1787]
 gi|210151008|gb|EEA82016.1| hypothetical protein CLONEX_02124 [Clostridium nexile DSM 1787]
          Length = 91

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 51/86 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ + +I+++  LS+KD+ + +    + + +   +GE I++  F TF V ++ +R G
Sbjct: 1  MNKTEFISAIAEKAELSKKDAEKALKAFTDVVEEELKKGEKIQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + +KI+  +   FKA   LK
Sbjct: 61 RNPQTGETMKIEACKAPKFKAGKALK 86


>gi|258645647|ref|ZP_05733116.1| DNA-binding protein HU [Dialister invisus DSM 15470]
 gi|260403011|gb|EEW96558.1| DNA-binding protein HU [Dialister invisus DSM 15470]
          Length = 100

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   +++KDS + V  + + I  + V+G+ +++  F TF V+Q+ +R G
Sbjct: 1  MNKTELISAVAQTAEMTKKDSEKAVKAVIDVISQALVKGDKVQLIGFGTFEVRQRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T + +KI   +   ++ S  LK+R+
Sbjct: 61 HNPATQKAIKIPASKSPAWRVSKQLKERV 89


>gi|134290950|ref|YP_001114719.1| histone family protein DNA-binding protein [Burkholderia
          vietnamiensis G4]
 gi|134134139|gb|ABO58464.1| histone family protein DNA-binding protein [Burkholderia
          vietnamiensis G4]
          Length = 92

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++   G+S+ D+++ V  + + I D+  R EA+++  F  F   Q+ +R G
Sbjct: 1  MNKQELIDAVAAGAGVSKSDASKTVQAVLDAITDAVSRDEAVQLIGFGAFSRGQRSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T +E+ I     V F A    K  +
Sbjct: 61 RNPTTGEEIAIAAANTVKFAAGKAFKDAV 89


>gi|218134789|ref|ZP_03463593.1| hypothetical protein BACPEC_02692 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990174|gb|EEC56185.1| hypothetical protein BACPEC_02692 [Bacteroides pectinophilus ATCC
           43243]
          Length = 126

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 50/86 (58%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++LV ++S++  L++KDS + +    + + +   + E I++  F TF V ++ +R G
Sbjct: 36  MNKTELVAAMSEKSELTKKDSEKALKAFMDVVAEELKKDEKIQLVGFGTFEVAKRAARTG 95

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILK 90
           +N QT + +KI   +   FKA   LK
Sbjct: 96  KNPQTGKAIKIPATKAPKFKAGKALK 121


>gi|167566113|ref|ZP_02359029.1| histone family protein DNA-binding protein [Burkholderia
          oklahomensis EO147]
          Length = 92

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++   G+S+ D+++ V  + + I D+  R EA+++  F  F   Q+ +R G
Sbjct: 1  MNKQELIDAVAAGAGVSKSDASKTVQAVLDAITDAVSRDEAVQLVGFGAFSRGQRSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T +E+ I     V F A    K  +
Sbjct: 61 RNPTTGEEIAIAAANTVKFTAGKAFKDAV 89


>gi|315419727|gb|ADU15833.1| histone-like protein [Streptococcus parasanguinis]
          Length = 91

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 49/85 (57%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + +   +GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90
          N QT +E+KI   +V  FKA   LK
Sbjct: 63 NPQTGKEIKIAASKVPAFKAGKALK 87


>gi|188992772|ref|YP_001904782.1| histone-like protein [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167734532|emb|CAP52742.1| histone-like protein [Xanthomonas campestris pv. campestris]
          Length = 132

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 49/89 (55%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L+  ++    +S+ ++ R V  + +EI  +  +G+A+ +  F TF V+++  R G
Sbjct: 43  MNKTELIDGVAAAADISKAEAGRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERTG 102

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T   +KI   +   FKA   LK  +
Sbjct: 103 RNPKTGDSIKIAASKNPAFKAGKALKDAV 131


>gi|167764650|ref|ZP_02436771.1| hypothetical protein BACSTE_03040 [Bacteroides stercoris ATCC
           43183]
 gi|167697319|gb|EDS13898.1| hypothetical protein BACSTE_03040 [Bacteroides stercoris ATCC
           43183]
          Length = 101

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 55/97 (56%), Gaps = 1/97 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + + +LV +I++E G+++K+S + +  +   + +   +   + +  F TF VKQK +R G
Sbjct: 1   MNKKELVDAIAEETGMNKKESRKLLNVIIGIVIEEMKKDGKLLLMGFGTFFVKQKPARRG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
            N  T   ++I  +RVV F+ S+ L   ++   RGRK
Sbjct: 61  MNPSTFVPIEIPAKRVVYFRPSAYLNS-LLKRKRGRK 96


>gi|160871772|ref|ZP_02061904.1| integration host factor subunit alpha (IHF-alpha) [Rickettsiella
          grylli]
 gi|159120571|gb|EDP45909.1| integration host factor subunit alpha (IHF-alpha) [Rickettsiella
          grylli]
          Length = 102

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T++DL+ S+  +E  LSR  + + V   F +I  +  +GE++KIS    F  + K  R 
Sbjct: 4  LTKADLIHSLRQQESSLSRLVANKLVDAFFEQIMFALEQGESVKISGLGRFRRRLKKERP 63

Query: 64 GRNLQTNQEVKIDPRRVVVFKAS 86
          GRN QT    ++  R VV+F+AS
Sbjct: 64 GRNPQTGVTTQVSSRNVVLFQAS 86


>gi|91775279|ref|YP_545035.1| integration host factor, beta subunit [Methylobacillus
          flagellatus KT]
 gi|91775423|ref|YP_545179.1| integration host factor, beta subunit [Methylobacillus
          flagellatus KT]
 gi|91709266|gb|ABE49194.1| integration host factor, beta subunit [Methylobacillus
          flagellatus KT]
 gi|91709410|gb|ABE49338.1| integration host factor, beta subunit [Methylobacillus
          flagellatus KT]
          Length = 95

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ +++  F  L  KD+   V T+ + + ++   GE I+I  F +F +  +  R+
Sbjct: 1  MTKSELIANLAARFPQLVVKDAELSVKTILDSMTENLASGERIEIRGFGSFSLNYRPPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++V++  + V  FKA   L++R+
Sbjct: 61 GRNPKTGEKVQVPEKHVPHFKAGKELRERV 90


>gi|217976340|ref|YP_002360487.1| integration host factor, beta subunit [Methylocella silvestris
          BL2]
 gi|254803537|sp|B8EMZ0|IHFB_METSB RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|217501716|gb|ACK49125.1| integration host factor, beta subunit [Methylocella silvestris
          BL2]
          Length = 96

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I+ +   L  +D  + V  + +EI ++  RG+ +++  F  F VK + +RV
Sbjct: 1  MIKSELVQRIADRNPHLYLRDVEKIVNAILDEITNALSRGDRVELRGFGAFSVKHRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +D + V  FK    +++R+
Sbjct: 61 GRNPRTGAHVSVDEKVVPFFKTGKEMRERL 90


>gi|295398577|ref|ZP_06808609.1| DNA-binding protein HU [Aerococcus viridans ATCC 11563]
 gi|294973178|gb|EFG48973.1| DNA-binding protein HU [Aerococcus viridans ATCC 11563]
          Length = 106

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 46/85 (54%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
            +++LV++++   G S+K     V  +F +I      GE +++  F +F V+ + +R GR
Sbjct: 18  NKAELVQNVANAVGDSKKSVAPVVDAVFEQIEAFLADGEKVQLIGFGSFEVRDRAARKGR 77

Query: 66  NLQTNQEVKIDPRRVVVFKASSILK 90
           N QT  E++I   +V  FK    LK
Sbjct: 78  NPQTGDEIEIPASKVPAFKPGKALK 102


>gi|289167992|ref|YP_003446261.1| histone-like protein [Streptococcus mitis B6]
 gi|288907559|emb|CBJ22396.1| histone-like protein [Streptococcus mitis B6]
          Length = 91

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F  + +    GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVEAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E+KI   +V  FKA   LK
Sbjct: 64 PQTGKEIKIAASKVPAFKAGKALK 87


>gi|284009059|emb|CBA76026.1| DNA-binding protein HU-alpha (HU-2) [Arsenophonus nasoniae]
          Length = 98

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 51/93 (54%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          +++T+ + D+V+ + ++  L++  +   +  L   I D+   GE ++   F TF    + 
Sbjct: 5  VNETMKKGDVVQYVMQKANLNKTQAKNALEALIECITDALKEGEQVQFVGFGTFRTNHRA 64

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +R+GRN +T  E+KI+   V VF A   LK+ +
Sbjct: 65 ARIGRNPKTGAELKIEAANVPVFVAGKSLKEAV 97


>gi|270292588|ref|ZP_06198799.1| DNA-binding protein HU [Streptococcus sp. M143]
 gi|293365596|ref|ZP_06612305.1| DNA-binding protein HU [Streptococcus oralis ATCC 35037]
 gi|306829650|ref|ZP_07462840.1| DNA-binding protein HU [Streptococcus mitis ATCC 6249]
 gi|307703547|ref|ZP_07640489.1| putative DNA-binding protein HU [Streptococcus oralis ATCC 35037]
 gi|315613311|ref|ZP_07888220.1| DNA-binding protein HU [Streptococcus sanguinis ATCC 49296]
 gi|322375383|ref|ZP_08049896.1| DNA-binding protein HU [Streptococcus sp. C300]
 gi|331266215|ref|YP_004325845.1| histone-like protein [Streptococcus oralis Uo5]
 gi|270278567|gb|EFA24413.1| DNA-binding protein HU [Streptococcus sp. M143]
 gi|291315964|gb|EFE56408.1| DNA-binding protein HU [Streptococcus oralis ATCC 35037]
 gi|304428736|gb|EFM31826.1| DNA-binding protein HU [Streptococcus mitis ATCC 6249]
 gi|307622954|gb|EFO01949.1| putative DNA-binding protein HU [Streptococcus oralis ATCC 35037]
 gi|315314546|gb|EFU62589.1| DNA-binding protein HU [Streptococcus sanguinis ATCC 49296]
 gi|315419705|gb|ADU15822.1| histone-like protein [Streptococcus oralis]
 gi|321279646|gb|EFX56686.1| DNA-binding protein HU [Streptococcus sp. C300]
 gi|326682887|emb|CBZ00504.1| histone-like protein [Streptococcus oralis Uo5]
          Length = 91

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F  + +    GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E+KI   +V  FKA   LK
Sbjct: 64 PQTGKEIKIAASKVPAFKAGKALK 87


>gi|94270519|ref|ZP_01291761.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|93450767|gb|EAT01823.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
          Length = 91

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV+ ++ E  +S+  + + V  +F+ + ++  +GE I    F TF  + + ++  
Sbjct: 1  MNKKELVEKLAAEGEISKAAADKLVKGVFDNMAEALAKGEKITFPGFGTFETRDRAAKES 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + V++  R+ V FK    LK ++
Sbjct: 61 RNPRTGEPVQVPARKAVAFKPGKTLKDQV 89


>gi|160935949|ref|ZP_02083323.1| hypothetical protein CLOBOL_00844 [Clostridium bolteae ATCC
          BAA-613]
 gi|158441191|gb|EDP18908.1| hypothetical protein CLOBOL_00844 [Clostridium bolteae ATCC
          BAA-613]
          Length = 91

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  LS+KD+ + V    + + +  V+G  +++  F TF V ++ +R G
Sbjct: 1  MNKTELIAAVAEKAELSKKDAEKAVKAFTDAVSEELVKGGKVQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I+  +   FKA   LK  +
Sbjct: 61 RNPKTGKTMTIEASKTPKFKAGKALKDEV 89


>gi|78221576|ref|YP_383323.1| histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
 gi|78192831|gb|ABB30598.1| Histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
          Length = 94

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV +++K   L++  + + V  + + + D+  +G+ + +  F +F V  + +R G
Sbjct: 1  MTKAELVDAVAKSANLTKAAADKAVGAVISAVSDALKKGDKVTLVGFGSFEVSTRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+KI   +V  F+    LK
Sbjct: 61 RNPQTGKEIKIAAAKVPKFRPGKALK 86


>gi|21230442|ref|NP_636359.1| histone-like protein [Xanthomonas campestris pv. campestris str.
          ATCC 33913]
 gi|21241841|ref|NP_641423.1| histone-like protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|66769564|ref|YP_244326.1| histone-like protein [Xanthomonas campestris pv. campestris str.
          8004]
 gi|84622592|ref|YP_449964.1| histone-like protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|166710932|ref|ZP_02242139.1| histone-like protein [Xanthomonas oryzae pv. oryzicola BLS256]
 gi|188578368|ref|YP_001915297.1| DNA-binding protein HU [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|289664181|ref|ZP_06485762.1| histone-like protein [Xanthomonas campestris pv. vasculorum
          NCPPB702]
 gi|289668773|ref|ZP_06489848.1| histone-like protein [Xanthomonas campestris pv. musacearum
          NCPPB4381]
 gi|325914923|ref|ZP_08177255.1| bacterial nucleoid DNA-binding protein [Xanthomonas vesicatoria
          ATCC 35937]
 gi|325927444|ref|ZP_08188691.1| bacterial nucleoid DNA-binding protein [Xanthomonas perforans
          91-118]
 gi|21107221|gb|AAM35959.1| histone-like protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21112004|gb|AAM40283.1| histone-like protein [Xanthomonas campestris pv. campestris str.
          ATCC 33913]
 gi|66574896|gb|AAY50306.1| histone-like protein [Xanthomonas campestris pv. campestris str.
          8004]
 gi|84366532|dbj|BAE67690.1| histone-like protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188522820|gb|ACD60765.1| DNA-binding protein HU [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|325538816|gb|EGD10480.1| bacterial nucleoid DNA-binding protein [Xanthomonas vesicatoria
          ATCC 35937]
 gi|325542194|gb|EGD13689.1| bacterial nucleoid DNA-binding protein [Xanthomonas perforans
          91-118]
          Length = 90

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++    +S+ ++ R V  + +EI  +  +G+A+ +  F TF V+++  R G
Sbjct: 1  MNKTELIDGVAAAADISKAEAGRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   +KI   +   FKA   LK  +
Sbjct: 61 RNPKTGDSIKIAASKNPAFKAGKALKDAV 89


>gi|217076815|ref|YP_002334531.1| DNA-binding protein HU 1 [Thermosipho africanus TCF52B]
 gi|217036668|gb|ACJ75190.1| DNA-binding protein HU 1 [Thermosipho africanus TCF52B]
          Length = 92

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +++ +LV  I+++   L +KD    V  +F  I D+  +GE +++  F TF V++   R 
Sbjct: 1  MSKKELVNMIAEKIPELKKKDIKAVVDAVFESISDALAKGEKVQLIGFGTFEVRKAEERT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          G N +T +++KI  R+V  FK    LK+++
Sbjct: 61 GVNPRTREKIKIPARKVPKFKPGKELKEKV 90


>gi|167563627|ref|ZP_02356543.1| integration host factor subunit beta [Burkholderia oklahomensis
           EO147]
 gi|167570789|ref|ZP_02363663.1| integration host factor subunit beta [Burkholderia oklahomensis
           C6786]
          Length = 107

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 60/103 (58%), Gaps = 3/103 (2%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + D+  +G  I+I  F +F + ++ +RV
Sbjct: 1   MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN ++ ++V++  + V  FK    L++R+  D R  +  K+D
Sbjct: 61  GRNPKSGEKVQVPEKYVPHFKPGKELRERV--DGRAGEPLKND 101


>gi|91793844|ref|YP_563495.1| histone-like DNA-binding protein [Shewanella denitrificans OS217]
 gi|91715846|gb|ABE55772.1| histone-like DNA-binding protein [Shewanella denitrificans OS217]
          Length = 90

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + +    + +    G+ I +  F TF V+Q+  R G
Sbjct: 1  MNKSELIEKIASGADISKAAAGRALDSFIAAVTEGLKDGDKISLVGFGTFEVRQRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    +  FKA   LK  +
Sbjct: 61 RNPQTGKEIKIAAANIPAFKAGKSLKDAV 89


>gi|78355564|ref|YP_387013.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
 gi|78217969|gb|ABB37318.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
          Length = 97

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 49/85 (57%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           KT+T++D+V +I ++   +R +    V +L   +  +  +  A+ IS F  F    K +
Sbjct: 3  GKTLTKADIVDAIYEKTERNRAEVKNVVESLLGIMKQAIKKDHALLISGFGKFEAYDKKA 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKAS 86
          R GRN QT++ + + PR+VVVF+ S
Sbjct: 63 RKGRNPQTDETITLPPRKVVVFRLS 87


>gi|260776379|ref|ZP_05885274.1| DNA-binding protein HU-beta [Vibrio coralliilyticus ATCC BAA-450]
 gi|261253456|ref|ZP_05946029.1| DNA-binding protein HU-beta [Vibrio orientalis CIP 102891]
 gi|323495053|ref|ZP_08100142.1| DNA-binding protein HU-beta [Vibrio brasiliensis LMG 20546]
 gi|260607602|gb|EEX33867.1| DNA-binding protein HU-beta [Vibrio coralliilyticus ATCC BAA-450]
 gi|260936847|gb|EEX92836.1| DNA-binding protein HU-beta [Vibrio orientalis CIP 102891]
 gi|323310710|gb|EGA63885.1| DNA-binding protein HU-beta [Vibrio brasiliensis LMG 20546]
          Length = 90

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I++   LS+  + R +      + D+   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVEKIAENADLSKASAGRALDAFIEAVGDTLQSGDQVALVGFGTFSVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E++I   +V  FKA   LK
Sbjct: 61 RNPKTGEEIQIAEAKVPAFKAGKALK 86


>gi|94263644|ref|ZP_01287453.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|94267151|ref|ZP_01290783.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|93452119|gb|EAT02793.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|93455949|gb|EAT06104.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
          Length = 92

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+++++    +  +++     T+   + D+   G+ I+I  F +F VK+  S  G
Sbjct: 1  MNKSDLIEALATASEIPNREAAAITRTILAAMGDALSDGDNIEIRGFGSFTVKEYDSYYG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +++++ P+R+  FK    L++R+
Sbjct: 61 RNPKTGEKIRVAPKRMPFFKMGKELRERL 89


>gi|300704749|ref|YP_003746352.1| integration host factor subunit beta [Ralstonia solanacearum
          CFBP2957]
 gi|299072413|emb|CBJ43758.1| Integration host factor subunit beta (IHF-beta) [Ralstonia
          solanacearum CFBP2957]
          Length = 140

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 4  TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+S+LV+ ++  F  L  +D+   V T+ + + D+   G  I+I  F +F + ++  R
Sbjct: 2  PMTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          VGRN ++ ++V +  +RV  FKA   L++R+
Sbjct: 62 VGRNPKSGEKVLVPEKRVPHFKAGKELRERV 92


>gi|83749857|ref|ZP_00946825.1| Integration host factor beta-subunit [Ralstonia solanacearum
          UW551]
 gi|207725367|ref|YP_002255763.1| integration host factor beta-subunit (ihf-beta) protein
          [Ralstonia solanacearum MolK2]
 gi|207743934|ref|YP_002260326.1| integration host factor beta-subunit (ihf-beta) protein
          [Ralstonia solanacearum IPO1609]
 gi|83723470|gb|EAP70680.1| Integration host factor beta-subunit [Ralstonia solanacearum
          UW551]
 gi|206590603|emb|CAQ37565.1| integration host factor beta-subunit (ihf-beta) protein
          [Ralstonia solanacearum MolK2]
 gi|206595336|emb|CAQ62263.1| integration host factor beta-subunit (ihf-beta) protein
          [Ralstonia solanacearum IPO1609]
          Length = 140

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 4  TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+S+LV+ ++  F  L  +D+   V T+ + + D+   G  I+I  F +F + ++  R
Sbjct: 2  PMTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          VGRN ++ ++V +  +RV  FKA   L++R+
Sbjct: 62 VGRNPKSGEKVLVPEKRVPHFKAGKELRERV 92


>gi|160903339|ref|YP_001568920.1| histone family protein DNA-binding protein [Petrotoga mobilis
          SJ95]
 gi|160360983|gb|ABX32597.1| histone family protein DNA-binding protein [Petrotoga mobilis
          SJ95]
          Length = 90

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLV + +K+  +++KD+  FV    + + ++  +GE +K+  F TF V+++ +R G
Sbjct: 1  MNKKDLVDAFAKKANVTKKDAESFVDAFVDVVSEALSKGEEVKLVGFGTFKVQKRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N QT + +KI  + V  F     LK
Sbjct: 61 VNPQTGKAIKIPEKMVPKFVPGKELK 86


>gi|27375853|ref|NP_767382.1| integration host factor subunit beta [Bradyrhizobium japonicum
          USDA 110]
 gi|81740124|sp|Q89WE8|IHFB_BRAJA RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|27348991|dbj|BAC46007.1| integration host factor beta subunit [Bradyrhizobium japonicum
          USDA 110]
          Length = 101

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  +  EI  +  RG+ +++  F  F VK + +R 
Sbjct: 1  MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVAALARGDRVELRGFGAFSVKHRPARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T   V +D + V  FK    +++R+  D
Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRD 93


>gi|294012141|ref|YP_003545601.1| integration host factor beta subunit [Sphingobium japonicum
          UT26S]
 gi|292675471|dbj|BAI96989.1| integration host factor beta subunit [Sphingobium japonicum
          UT26S]
          Length = 96

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ +++E   L+ ++  R V   F EI D    G  +++  F  F  + + +R 
Sbjct: 1  MIRSELIQKLAEENPNLNLQEVERIVDLFFKEIVDRLSSGGRVELRGFGAFTTRAREART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++V +D +RV  FK    +++R+
Sbjct: 61 GRNPRTGEQVPVDAKRVPYFKPGKEMRERL 90


>gi|269796894|ref|YP_003316349.1| nucleoid DNA-binding protein [Sanguibacter keddieii DSM 10542]
 gi|269099079|gb|ACZ23515.1| bacterial nucleoid DNA-binding protein [Sanguibacter keddieii DSM
          10542]
          Length = 94

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R+DLV +I+ + GL++ D+   ++ L   + +S   GEA+K++   +    ++ +R 
Sbjct: 2  SLNRTDLVSAIAGKSGLTKTDADAALSALQEVLVESLSAGEAVKVTGLLSVERVERAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I     V   A S+LKK +
Sbjct: 62 GRNPRTGEEISIPAGFGVKISAGSLLKKAV 91


>gi|21672326|ref|NP_660393.1| DNA-binding protein HU-alpha [Buchnera aphidicola str. Sg
          (Schizaphis graminum)]
 gi|25008343|sp|Q8KA69|DBH_BUCAP RecName: Full=DNA-binding protein HU
 gi|21622927|gb|AAM67604.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. Sg
          (Schizaphis graminum)]
          Length = 90

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+K ISK+  LS+      +  + + I +S  +GE+++I  F TF V  + SR G
Sbjct: 1  MNKTQLIKIISKQSNLSKIQIKSTLEKILSAIIESLKKGESVQIVGFGTFKVNSRASRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F +   LK  I
Sbjct: 61 RNPQTGKEIIIPATKVPSFISGKTLKNAI 89


>gi|17545629|ref|NP_519031.1| integration host factor subunit beta [Ralstonia solanacearum
          GMI1000]
 gi|21362603|sp|Q8Y0Y3|IHFB_RALSO RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|17427922|emb|CAD14612.1| putative integration host factor beta-subunit (ihf-beta) protein
          [Ralstonia solanacearum GMI1000]
          Length = 138

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV+ ++  F  L  +D+   V T+ + + D+   G  I+I  F +F + ++  RV
Sbjct: 1  MTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V +  +RV  FKA   L++R+
Sbjct: 61 GRNPKSGEKVLVPEKRVPHFKAGKELRERV 90


>gi|300692112|ref|YP_003753107.1| integration host factor subunit beta (IHF-beta) [Ralstonia
          solanacearum PSI07]
 gi|299079172|emb|CBJ51840.1| Integration host factor subunit beta (IHF-beta) [Ralstonia
          solanacearum PSI07]
          Length = 140

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 4  TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+S+LV+ ++  F  L  +D+   V T+ + + D+   G  I+I  F +F + ++  R
Sbjct: 2  PMTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          VGRN ++ ++V +  +RV  FKA   L++R+
Sbjct: 62 VGRNPKSGEKVLVPEKRVPHFKAGKELRERV 92


>gi|256833715|ref|YP_003162442.1| histone family protein DNA-binding protein [Jonesia denitrificans
          DSM 20603]
 gi|256687246|gb|ACV10139.1| histone family protein DNA-binding protein [Jonesia denitrificans
          DSM 20603]
          Length = 93

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + RS+LV +I+ + GL++ D+   ++ L + + +    GEA+KI+   +    ++ +R 
Sbjct: 2  ALNRSELVSAIAAKSGLTKTDADAALSALQDVLVEQLSAGEAVKITGLLSVERVERKART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E++I     V   A SILKK +
Sbjct: 62 GRNPRTGEEIEIPAGYGVKISAGSILKKAV 91


>gi|240144365|ref|ZP_04742966.1| DNA-binding protein HU [Roseburia intestinalis L1-82]
 gi|257203616|gb|EEV01901.1| DNA-binding protein HU [Roseburia intestinalis L1-82]
 gi|291535593|emb|CBL08705.1| Bacterial nucleoid DNA-binding protein [Roseburia intestinalis
          M50/1]
 gi|291540838|emb|CBL13949.1| Bacterial nucleoid DNA-binding protein [Roseburia intestinalis
          XB6B4]
          Length = 91

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++  LS+KD+   +    + + +   +GE I++  F TF V ++  R G
Sbjct: 1  MNKAELVAAMAEKTELSKKDAEAALKAFTDVVAEELKKGEKIQLVGFGTFEVSERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN Q+ +E+ I   +   FKA   LK
Sbjct: 61 RNPQSGKEMVIPASKAPKFKAGKALK 86


>gi|83745916|ref|ZP_00942973.1| DNA-binding protein HU [Ralstonia solanacearum UW551]
 gi|83727606|gb|EAP74727.1| DNA-binding protein HU [Ralstonia solanacearum UW551]
          Length = 123

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 46/87 (52%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            + ++DL+  ++ +  +S+  + R +  L   I D+   G ++ +  F TF V Q+ +R 
Sbjct: 33  AMNKTDLIDHVAAQTDMSKAAAGRAIDALIGGIKDALCDGGSVTLVGFGTFLVGQRSARA 92

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN +T   +KI+  +V  FK    LK
Sbjct: 93  GRNPRTGATIKIEGAKVAKFKPGKALK 119


>gi|322507540|gb|ADX02994.1| Putative bacterial nucleoid DNA-binding protein [Acinetobacter
          baumannii 1656-2]
          Length = 94

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+  + ++I+K+ G+S+  +   + T  + I  S   G+ + +  F TF VK + +R G
Sbjct: 4  VTKKHIAETIAKKVGISKSQAEEALNTFESIIQGSLADGDQVTLVGFGTFAVKDRAARKG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E++I   +V  FK    LK+ +
Sbjct: 64 RNPKTGEEIQIAATKVPTFKPGKALKEAV 92


>gi|315419713|gb|ADU15826.1| histone-like protein [Streptococcus oralis]
 gi|315419715|gb|ADU15827.1| histone-like protein [Streptococcus oralis]
 gi|315419721|gb|ADU15830.1| histone-like protein [Streptococcus oralis]
          Length = 91

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F  + +    GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E+KI   +V  FKA   LK
Sbjct: 64 PQTGKEIKIAASKVPAFKAGKALK 87


>gi|294083695|ref|YP_003550452.1| histone family protein DNA-binding protein [Candidatus
          Puniceispirillum marinum IMCC1322]
 gi|292663267|gb|ADE38368.1| histone family protein DNA-binding protein [Candidatus
          Puniceispirillum marinum IMCC1322]
          Length = 91

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  +++  GL++ D+ R V  +F  I  +   G  ++I  F TF V  + +  G
Sbjct: 1  MNKNDLVSEVAESSGLTKADAGRAVDAVFESIQGALKSGGDVRIVGFGTFSVAHRAATTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + ++I   +   FKA + LK+ +
Sbjct: 61 RNPRTGETIQIKASKQPKFKAGAPLKEAV 89


>gi|282882471|ref|ZP_06291092.1| DNA-binding protein HU [Peptoniphilus lacrimalis 315-B]
 gi|300814663|ref|ZP_07094914.1| DNA-binding protein HU [Peptoniphilus sp. oral taxon 836 str.
          F0141]
 gi|281297613|gb|EFA90088.1| DNA-binding protein HU [Peptoniphilus lacrimalis 315-B]
 gi|300511282|gb|EFK38531.1| DNA-binding protein HU [Peptoniphilus sp. oral taxon 836 str.
          F0141]
          Length = 92

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV SI+ +  L++KD+ + +      + ++  +GE +++  F TF V+Q+ +R G
Sbjct: 1  MNKQELVASIATKSSLTKKDAEKALNGFLASVEEALAKGEKVQLVGFGTFEVRQRKAREG 60

Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93
          RN +  +EV KI   +  VF++   LK+ +
Sbjct: 61 RNPRNPEEVIKIPASKAPVFRSGKALKEAV 90


>gi|30995375|ref|NP_438591.2| DNA-binding protein HU-alpha [Haemophilus influenzae Rd KW20]
 gi|145628799|ref|ZP_01784599.1| DNA-binding protein HU [Haemophilus influenzae 22.1-21]
 gi|145630394|ref|ZP_01786175.1| NADH pyrophosphatase [Haemophilus influenzae R3021]
 gi|145632675|ref|ZP_01788409.1| DNA-binding protein HU [Haemophilus influenzae 3655]
 gi|145634573|ref|ZP_01790282.1| NADH pyrophosphatase [Haemophilus influenzae PittAA]
 gi|145636301|ref|ZP_01791970.1| NADH pyrophosphatase [Haemophilus influenzae PittHH]
 gi|145638660|ref|ZP_01794269.1| NADH pyrophosphatase [Haemophilus influenzae PittII]
 gi|145640395|ref|ZP_01795979.1| DNA-binding protein HU [Haemophilus influenzae R3021]
 gi|148825290|ref|YP_001290043.1| NADH pyrophosphatase [Haemophilus influenzae PittEE]
 gi|148827627|ref|YP_001292380.1| DNA-binding protein HU [Haemophilus influenzae PittGG]
 gi|229844410|ref|ZP_04464550.1| DNA-binding protein HU [Haemophilus influenzae 6P18H1]
 gi|229846516|ref|ZP_04466624.1| DNA-binding protein HU [Haemophilus influenzae 7P49H1]
 gi|319775643|ref|YP_004138131.1| DNA-binding protein HU [Haemophilus influenzae F3047]
 gi|1169231|sp|P43722|DBH_HAEIN RecName: Full=DNA-binding protein HU
 gi|144979269|gb|EDJ88955.1| DNA-binding protein HU [Haemophilus influenzae 22.1-21]
 gi|144984129|gb|EDJ91566.1| NADH pyrophosphatase [Haemophilus influenzae R3021]
 gi|144986870|gb|EDJ93422.1| DNA-binding protein HU [Haemophilus influenzae 3655]
 gi|145268118|gb|EDK08113.1| NADH pyrophosphatase [Haemophilus influenzae PittAA]
 gi|145270466|gb|EDK10400.1| NADH pyrophosphatase [Haemophilus influenzae PittHH]
 gi|145272255|gb|EDK12163.1| NADH pyrophosphatase [Haemophilus influenzae PittII]
 gi|145274981|gb|EDK14843.1| DNA-binding protein HU [Haemophilus influenzae 22.4-21]
 gi|148715450|gb|ABQ97660.1| NADH pyrophosphatase [Haemophilus influenzae PittEE]
 gi|148718869|gb|ABQ99996.1| DNA-binding protein HU [Haemophilus influenzae PittGG]
 gi|229810609|gb|EEP46327.1| DNA-binding protein HU [Haemophilus influenzae 7P49H1]
 gi|229812659|gb|EEP48348.1| DNA-binding protein HU [Haemophilus influenzae 6P18H1]
 gi|301169130|emb|CBW28727.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Haemophilus influenzae 10810]
 gi|309750154|gb|ADO80138.1| DNA-binding protein HU-alpha [Haemophilus influenzae R2866]
 gi|317450234|emb|CBY86450.1| DNA-binding protein HU [Haemophilus influenzae F3047]
          Length = 90

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+    L++K +   +    + I  S   GE +++  F TF V ++ +R G
Sbjct: 1  MNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I   +V  F +   LK  I
Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAI 89


>gi|188534629|ref|YP_001908426.1| HopD, DNA-binding protein HU-beta (synonym HupB) [Erwinia
          tasmaniensis Et1/99]
 gi|188029671|emb|CAO97550.1| HopD, DNA-binding protein HU-beta (synonym HupB) [Erwinia
          tasmaniensis Et1/99]
          Length = 90

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  I+ +  +S+  + R +      + +S   G+ + +  F TF V+++  RVG
Sbjct: 1  MNKSELIDKIATDADISKAAAGRVLDAFIGSVTESLQAGDEVALVGFGTFSVRERAERVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F+A   LK  +
Sbjct: 61 RNPQTGKEITIAAGKVPGFRAGKTLKDAV 89


>gi|183597477|ref|ZP_02958970.1| hypothetical protein PROSTU_00752 [Providencia stuartii ATCC
          25827]
 gi|188023227|gb|EDU61267.1| hypothetical protein PROSTU_00752 [Providencia stuartii ATCC
          25827]
          Length = 90

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++   L++  +   + +  N I ++  +GE +++  F TF V  +  R G
Sbjct: 1  MNKTELVDAIAESADLTKVQAKAALESTLNAISETLKKGEQVQLVGFGTFKVSHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I    V  F A   LK+ +
Sbjct: 61 RNPQTREEITIPATNVPAFSAGKALKEAV 89


>gi|148826039|ref|YP_001290792.1| integration host factor subunit alpha [Haemophilus influenzae
          PittEE]
 gi|229847462|ref|ZP_04467559.1| 50S ribosomal protein L35 [Haemophilus influenzae 7P49H1]
 gi|166918506|sp|A5UCA8|IHFA_HAEIE RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|148716199|gb|ABQ98409.1| 50S ribosomal protein L35 [Haemophilus influenzae PittEE]
 gi|229809603|gb|EEP45330.1| 50S ribosomal protein L35 [Haemophilus influenzae 7P49H1]
          Length = 96

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+ D+++ +S ++ LS++D+   V     EI  S   G+ +K+S F  F ++ K SR 
Sbjct: 3  TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRLSLESGQDVKLSGFGNFELRDKSSRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  RRVV FK    L+ R+
Sbjct: 63 GRNPKTGDVVAVSARRVVTFKPGQKLRARV 92


>gi|110633525|ref|YP_673733.1| histone-like DNA-binding protein [Mesorhizobium sp. BNC1]
 gi|110284509|gb|ABG62568.1| bacterial nucleoid protein Hbs [Chelativorans sp. BNC1]
          Length = 90

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ GLS+ D+   V  +F+ I      G  +++  F  F V ++ +  G
Sbjct: 1  MNKNELVSAVAEKAGLSKGDAQSAVDAVFSVITGELKSGGDVRLVGFGNFSVSRREASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  EVKI  R V  F A   LK  I
Sbjct: 61 RNPQTGAEVKIPARNVPKFSAGKGLKDAI 89


>gi|302878113|ref|YP_003846677.1| histone family protein DNA-binding protein [Gallionella
          capsiferriformans ES-2]
 gi|302580902|gb|ADL54913.1| histone family protein DNA-binding protein [Gallionella
          capsiferriformans ES-2]
          Length = 93

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +L+ +++ + G ++ ++ R +      + ++   G+ I +  F TF V+++ +R G
Sbjct: 1  MNRKELIDALAAKTGSTKTEAERNIAAFIEVVTETLAAGDDIALVGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T  E+KI   +   FKA + LK  +
Sbjct: 61 RNPATGAELKIAASKQAAFKAGATLKAAV 89


>gi|58580659|ref|YP_199675.1| histone-like protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58425253|gb|AAW74290.1| histone-like protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 145

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 49/89 (55%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L+  ++    +S+ ++ R V  + +EI  +  +G+A+ +  F TF V+++  R G
Sbjct: 56  MNKTELIDGVAAAADISKAEAGRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERTG 115

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T   +KI   +   FKA   LK  +
Sbjct: 116 RNPKTGDSIKIAASKNPAFKAGKALKDAV 144


>gi|257439404|ref|ZP_05615159.1| DNA-binding protein HU [Faecalibacterium prausnitzii A2-165]
 gi|257198279|gb|EEU96563.1| DNA-binding protein HU [Faecalibacterium prausnitzii A2-165]
          Length = 89

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DL+  ++    +S+K +   V   F+ +  +   GE I IS F TF ++++  R G
Sbjct: 1  MTKTDLIAQVAANTEMSKKSAELAVNAAFDALSKAMAEGEKITISGFGTFEIRERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N +T + + I   + +VFK    LK
Sbjct: 61 INPRTREPITIAASKSIVFKPGKALK 86


>gi|71908179|ref|YP_285766.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB]
 gi|71847800|gb|AAZ47296.1| Histone-like bacterial DNA-binding protein [Dechloromonas
          aromatica RCB]
          Length = 126

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRS+L+  +++ F  L +KD+   VT +   I  + V G  ++I  F  F +  +  R 
Sbjct: 1  MTRSELIALLAERFPQLVQKDAEMAVTEILGAIHAALVHGYRVEIRGFGVFDLNHRTPRQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN +T + V +  + V  FKA   L++R+M
Sbjct: 61 ARNPKTGEPVAVPAKWVPAFKAGKELRERVM 91


>gi|300721988|ref|YP_003711268.1| DNA-binding protein HU-beta, NS1 [Xenorhabdus nematophila ATCC
          19061]
 gi|297628485|emb|CBJ89050.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Xenorhabdus
          nematophila ATCC 19061]
          Length = 96

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R V    + + ++   G+ + +  F TF V+++ +R G
Sbjct: 6  VNKSQLIDKIAADVNISKAAAGRVVDAFISSVSEALKDGDDVALVGFGTFSVRERAARTG 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI   +V  F++   LK  +
Sbjct: 66 RNPQTGKEIKIAAAKVPAFRSGKGLKDAV 94


>gi|110635997|ref|YP_676205.1| integration host factor, beta subunit [Mesorhizobium sp. BNC1]
 gi|123161580|sp|Q11C35|IHFB_MESSB RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|110286981|gb|ABG65040.1| integration host factor, beta subunit [Chelativorans sp. BNC1]
          Length = 94

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 53/93 (56%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV++I+ +   L  +D    V  +F+EI ++  +G  +++  F  F VK + +R 
Sbjct: 1  MIKSELVQTIANRNPHLFLRDVENIVNAIFDEITEALAQGNRVELRGFGAFSVKNRPART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V ++ + V  FK    L++R+  D
Sbjct: 61 GRNPRTGESVHVEEKWVPFFKTGKELRERLNAD 93


>gi|187927876|ref|YP_001898363.1| integration host factor subunit beta [Ralstonia pickettii 12J]
 gi|187724766|gb|ACD25931.1| integration host factor, beta subunit [Ralstonia pickettii 12J]
          Length = 142

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 4  TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+S+LV+ ++  F  L  +D+   V T+ + + D+   G  I+I  F +F + ++  R
Sbjct: 2  PMTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          VGRN ++ ++V +  +RV  FKA   L++R+
Sbjct: 62 VGRNPKSGEKVLVPEKRVPHFKAGKELRERV 92


>gi|71906916|ref|YP_284503.1| integration host factor, beta subunit [Dechloromonas aromatica
          RCB]
 gi|123733294|sp|Q47GJ8|IHFB_DECAR RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|71846537|gb|AAZ46033.1| Integration host factor, beta subunit [Dechloromonas aromatica
          RCB]
          Length = 94

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  +++ F  L  KD+   V  + + + ++ VRG+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIAQLAERFPQLVAKDADFAVKMILDAMSEALVRGDRIEIRGFGSFALNYRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V +  + V  FKA   L++R+
Sbjct: 61 GRNPKSGEKVSVPAKWVPHFKAGKELRERV 90


>gi|117924544|ref|YP_865161.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
 gi|117608300|gb|ABK43755.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
          Length = 91

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+ +I+ + GL+++ +   V  +F+E+  +  +GE +++  F  F  + +  R  
Sbjct: 1  MTKSELILTIAAQKGLTKQYAAMVVDLVFSELGKALAKGERVELRGFGVFEPRARKPRAA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T ++V ++ +  V FK    ++KR+
Sbjct: 61 RNPKTGEKVAVESKTAVHFKPGLDMRKRV 89


>gi|269792401|ref|YP_003317305.1| histone family protein DNA-binding protein [Thermanaerovibrio
          acidaminovorans DSM 6589]
 gi|269100036|gb|ACZ19023.1| histone family protein DNA-binding protein [Thermanaerovibrio
          acidaminovorans DSM 6589]
          Length = 93

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 54/88 (61%), Gaps = 2/88 (2%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T++DLV  + K    +S+K ++  V  +FN I ++ V+G+ +++  F TF V+++ +R 
Sbjct: 1  MTKADLVNELVKSVEDISKKKASEAVDAIFNIIQEALVKGDKVQLVGFGTFEVQERAARQ 60

Query: 64 GRNLQ-TNQEVKIDPRRVVVFKASSILK 90
          GRN Q   + ++I  ++  VF+A   LK
Sbjct: 61 GRNPQDPTKTIEIPAKKAPVFRAGKSLK 88


>gi|167759629|ref|ZP_02431756.1| hypothetical protein CLOSCI_01987 [Clostridium scindens ATCC
          35704]
 gi|167662755|gb|EDS06885.1| hypothetical protein CLOSCI_01987 [Clostridium scindens ATCC
          35704]
          Length = 91

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+ +  LS+KDS + +    + + D   +   +++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAIADQAELSKKDSEKALKAFIDVVTDELKKDHKVQLVGFGTFEVSKRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + +KI+  +   FKA   LK
Sbjct: 61 RNPQTGKTMKIEACKAPKFKAGKALK 86


>gi|330961377|gb|EGH61637.1| HU family DNA-binding protein [Pseudomonas syringae pv.
          maculicola str. ES4326]
          Length = 91

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 47/87 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + ++V +I+++  L++  ST  +  +   I D+  R +++ +  F TF  + +G+R G+N
Sbjct: 3  KPEVVAAIAEKADLTKDQSTLVLNAILEHITDALSRKDSVTLVGFGTFLQRHRGARTGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT + VKI     V FK    LK  +
Sbjct: 63 PQTGEPVKIKASNTVAFKPGKALKDSV 89


>gi|307292730|ref|ZP_07572576.1| integration host factor, beta subunit [Sphingobium
          chlorophenolicum L-1]
 gi|306880796|gb|EFN12012.1| integration host factor, beta subunit [Sphingobium
          chlorophenolicum L-1]
          Length = 96

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ +++E   L+ ++  R V   F EI D    G  +++  F  F  + + +R 
Sbjct: 1  MIRSELIQKLAEENQNLNLQEVERIVDLFFKEIVDRLSTGGRVELRGFGAFTTRARDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++V +D +RV  FK    +++R+
Sbjct: 61 GRNPRTGEQVPVDAKRVPYFKPGKEMRERL 90


>gi|17988077|ref|NP_540711.1| integration host factor subunit beta [Brucella melitensis bv. 1
          str. 16M]
 gi|17983827|gb|AAL52975.1| integration host factor beta-subunit [Brucella melitensis bv. 1
          str. 16M]
          Length = 101

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 2  SKTITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          SK + +S+LV+ I S+   L ++D    V  +F+EI ++   G  +++  F  F VK + 
Sbjct: 5  SKAVIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRP 64

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +R GRN +T + V ++ + V  FK    L+ R+
Sbjct: 65 ARSGRNPRTGETVDVEEKWVPFFKTGKKLRDRL 97


>gi|157369341|ref|YP_001477330.1| histone family protein DNA-binding protein [Serratia
          proteamaculans 568]
 gi|157321105|gb|ABV40202.1| histone family protein DNA-binding protein [Serratia
          proteamaculans 568]
          Length = 101

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + DS   G+ + +  F +F V+++ +R G
Sbjct: 12 VNKSQLIDKIAAGADISKAAAGRALDAVIASVTDSLKEGDDVALVGFGSFTVRERSARTG 71

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+KI   +V  F+A   LK
Sbjct: 72 RNPQTGKEIKIAAAKVPAFRAGKALK 97


>gi|319758735|gb|ADV70677.1| nucleoid DNA-binding protein [Streptococcus suis JS14]
          Length = 89

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 39/68 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F  + D    GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATSLTKKDSAAAVDAVFGAVADYLAAGEKVQLIGFGNFEVRERSARTGRN 63

Query: 67 LQTNQEVK 74
           QT  E+K
Sbjct: 64 PQTGAEIK 71


>gi|304395502|ref|ZP_07377385.1| histone family protein DNA-binding protein [Pantoea sp. aB]
 gi|304356796|gb|EFM21160.1| histone family protein DNA-binding protein [Pantoea sp. aB]
          Length = 93

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R +      + D+   G+ + +  F TF V+ + +R G
Sbjct: 4  VNKSQLIDKIAADADISKAAAGRVLDAFMGSVSDALKEGDEVALVGFGTFSVRDRAARTG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F+A   LK  +
Sbjct: 64 RNPQTGKEITIPAGKVPGFRAGKALKDAV 92


>gi|71282434|ref|YP_268603.1| HU family DNA-binding protein [Colwellia psychrerythraea 34H]
 gi|71148174|gb|AAZ28647.1| DNA-binding protein, HU family [Colwellia psychrerythraea 34H]
          Length = 91

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV+ I++   +S+  + R + +L   +      G  + +  F T+ V  + +R G
Sbjct: 1  MNKSELVEKIAEGADISKASAGRALDSLIGSVTTELANGGDVALVGFGTYKVNDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I   +V  FKA   LK  +
Sbjct: 61 RNPQTGAEIQISAAKVPAFKAGKALKDAV 89


>gi|157151424|ref|YP_001450003.1| DNA-binding histone-like protein HU [Streptococcus gordonii str.
          Challis substr. CH1]
 gi|262282714|ref|ZP_06060482.1| DNA-binding protein HU [Streptococcus sp. 2_1_36FAA]
 gi|157076218|gb|ABV10901.1| DNA-binding histone-like protein HU [Streptococcus gordonii str.
          Challis substr. CH1]
 gi|262262005|gb|EEY80703.1| DNA-binding protein HU [Streptococcus sp. 2_1_36FAA]
          Length = 91

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  ++    L++KDS   V  +F  + +   +GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAAATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E+KI   +V  FKA   LK
Sbjct: 64 PQTGKEIKIAASKVPAFKAGKALK 87


>gi|222055876|ref|YP_002538238.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32]
 gi|221565165|gb|ACM21137.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32]
          Length = 91

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++++ + GLS K +   + ++F  + ++ + G+ I+I  F +F VK   S +G
Sbjct: 1  MNKSELIEALAAKKGLSYKKAEEIINSIFESMTNALLTGDRIEIRGFGSFVVKSYQSYMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + +  +++  FK    LK+++
Sbjct: 61 RNPKTGESIAVKSKKLPFFKVGKELKEKV 89


>gi|300023830|ref|YP_003756441.1| integration host factor subunit beta [Hyphomicrobium
          denitrificans ATCC 51888]
 gi|299525651|gb|ADJ24120.1| integration host factor, beta subunit [Hyphomicrobium
          denitrificans ATCC 51888]
          Length = 99

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I+     L  +D  R +  +F+EI D+  RG+ +++  F  F VK + SR 
Sbjct: 1  MIKSELVQKIATANPHLYHRDVERIINVIFDEIVDALSRGDRVELRGFGAFTVKHRASRQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  + V  FK    L+ R+
Sbjct: 61 GRNPRTGTTVAVAEKFVPFFKTGKELRDRL 90


>gi|115350978|ref|YP_772817.1| integration host factor subunit beta [Burkholderia ambifaria AMMD]
 gi|134295080|ref|YP_001118815.1| integration host factor subunit beta [Burkholderia vietnamiensis
           G4]
 gi|170698414|ref|ZP_02889487.1| integration host factor, beta subunit [Burkholderia ambifaria
           IOP40-10]
 gi|171316179|ref|ZP_02905403.1| integration host factor, beta subunit [Burkholderia ambifaria
           MEX-5]
 gi|172059983|ref|YP_001807635.1| integration host factor subunit beta [Burkholderia ambifaria
           MC40-6]
 gi|122323724|sp|Q0BH90|IHFB_BURCM RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|226709772|sp|B1YV36|IHFB_BURA4 RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|226709784|sp|A4JCH7|IHFB_BURVG RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|115280966|gb|ABI86483.1| integration host factor, beta subunit [Burkholderia ambifaria AMMD]
 gi|134138237|gb|ABO53980.1| integration host factor, beta subunit [Burkholderia vietnamiensis
           G4]
 gi|170136667|gb|EDT04922.1| integration host factor, beta subunit [Burkholderia ambifaria
           IOP40-10]
 gi|171098688|gb|EDT43483.1| integration host factor, beta subunit [Burkholderia ambifaria
           MEX-5]
 gi|171992500|gb|ACB63419.1| integration host factor, beta subunit [Burkholderia ambifaria
           MC40-6]
          Length = 107

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 2/103 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + D+  +G  I+I  F +F + ++ +RV
Sbjct: 1   MTKSELVAQLALRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN ++ ++V++  + V  FK    L++R+ D   G     DD
Sbjct: 61  GRNPKSGEKVQVPEKFVPHFKPGKELRERV-DGRAGEPLKADD 102


>gi|295136313|ref|YP_003586989.1| histone-like DNA-binding protein [Zunongwangia profunda SM-A87]
 gi|294984328|gb|ADF54793.1| histone-like DNA-binding protein [Zunongwangia profunda SM-A87]
          Length = 96

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 7/101 (6%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D+V +IS++ G+ + D    + T   E+  S   G+ + +  F +F VK +  + G
Sbjct: 1   MTKADIVANISEKLGMEKGDVQATIETFMEEVKSSLESGDNVYLRGFGSFVVKTRAEKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           RN+  N  +KI    +  FK + I        + G K N D
Sbjct: 61  RNISKNTTIKIPAHNIPAFKPAKIF-------VEGVKSNVD 94


>gi|299066734|emb|CBJ37928.1| DNA-binding protein HU-beta, transcriptional regulator, beta
          subunit [Ralstonia solanacearum CMR15]
          Length = 90

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  ++ +  +S+  + R +  L + I D+   G ++ +  F TF V Q+ +R G
Sbjct: 1  MNKTDLIDHVAAQTDMSKAAAGRAIDALIDGIKDALCDGGSVTLVGFGTFLVGQRSARAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI+  +V  FK    LK
Sbjct: 61 RNPRTGATIKIEGAKVAKFKPGKALK 86


>gi|237749146|ref|ZP_04579626.1| integration host factor subunit beta [Oxalobacter formigenes
          OXCC13]
 gi|229380508|gb|EEO30599.1| integration host factor subunit beta [Oxalobacter formigenes
          OXCC13]
          Length = 97

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ S++  +  L  KD+   V T+ + + D+   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIVSLAGSYPQLLAKDAELTVKTILDAMSDALANGQRIEIRGFGSFALSVRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V ++ +RV  FK    L++R+
Sbjct: 61 GRNPRSGEKVMVEEKRVPHFKPGKELRQRV 90


>gi|325479553|gb|EGC82649.1| DNA-binding protein HU-beta [Anaerococcus prevotii
          ACS-065-V-Col13]
          Length = 92

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +IS++ GL + +S + +      + ++ + GE +++  F TF V+ + +R G
Sbjct: 1  MNKSELLINISEKSGLKKSESEKALNAFLETVTEALIEGEKVQLVGFGTFEVRDRKAREG 60

Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93
          RN +  +EV +I   +  VFKA   LK+ +
Sbjct: 61 RNPRKPEEVIQIPASKAPVFKAGKTLKEAV 90


>gi|251772900|gb|EES53459.1| putative integration host factor, beta-subunit [Leptospirillum
          ferrodiazotrophum]
          Length = 91

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  ++++F   R++  R +  LF E     +R G+ +++  F    ++ +  R 
Sbjct: 1  MTKSELIIRLARQFPGIRREDAREMLDLFLEAMKEGLRSGDTVELRDFGVLRIRSRSQRK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN +T ++V ++ R+VV FK S  LK R++
Sbjct: 61 ARNPKTGEKVTVEARKVVYFKQSRTLKGRLL 91


>gi|121998363|ref|YP_001003150.1| histone family protein DNA-binding protein [Halorhodospira
          halophila SL1]
 gi|121589768|gb|ABM62348.1| histone family protein DNA-binding protein [Halorhodospira
          halophila SL1]
          Length = 91

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL + ++ E G+S++ +T  V+ +F  I +S   GE + I  F  F V  +  R G
Sbjct: 1  MNKADLAEKVAAETGVSKRVATDAVSAVFTGIEESLASGEDVSIPGFGKFAVVARPERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I     V FK  + LK+ +
Sbjct: 61 RNPQTGELIDIPAGMNVRFKPGAPLKRSV 89


>gi|319938218|ref|ZP_08012616.1| histone family protein DNA-binding protein [Coprobacillus sp.
          29_1]
 gi|319806739|gb|EFW03388.1| histone family protein DNA-binding protein [Coprobacillus sp.
          29_1]
          Length = 92

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV+ I+   GL++  +   V      + D    G+ I +  F TF V+ + +R G
Sbjct: 1  MNKTELVEKIAATAGLTKTQAEAAVNAFVATVTDGLKDGDKITLKGFGTFEVRAREARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + ++I   +V  FKASS LK
Sbjct: 61 RNPRTGETMEIAASKVPAFKASSALK 86


>gi|302878589|ref|YP_003847153.1| histone family protein DNA-binding protein [Gallionella
          capsiferriformans ES-2]
 gi|302581378|gb|ADL55389.1| histone family protein DNA-binding protein [Gallionella
          capsiferriformans ES-2]
          Length = 91

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +L+ +++ + G ++  + + +  L   I ++  +G++I +  F TF V+++ +R G
Sbjct: 1  MNRKELIDALATKTGSTKIVAEQNIAALIEVIGETLAKGDSISLVGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  E+KI   +V  FK  + LK  +
Sbjct: 61 RNPKTGAELKIAASKVPAFKPGATLKSAV 89


>gi|294851552|ref|ZP_06792225.1| integration host factor [Brucella sp. NVSL 07-0026]
 gi|294820141|gb|EFG37140.1| integration host factor [Brucella sp. NVSL 07-0026]
          Length = 101

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 2  SKTITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          SK + +S+LV+ I S+   L ++D    V  +F+EI ++   G  +++  F  F VK + 
Sbjct: 5  SKAVIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRP 64

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +R GRN +T + V ++ + V  FK    L+ R+
Sbjct: 65 ARSGRNPRTGETVDVEEKWVPFFKTGKELRDRL 97


>gi|229035244|ref|ZP_04189179.1| DNA-binding protein HU 1 [Bacillus cereus AH1271]
 gi|228728056|gb|EEL79097.1| DNA-binding protein HU 1 [Bacillus cereus AH1271]
          Length = 90

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L + ++++  L++KD+      + + I  +    E ++I  F TF V+++ +R G
Sbjct: 1  MNKTELTRVVAEKAELTQKDAAAATQAVLDTITTALANEEKVQILGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I   +   FKA   LK
Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELK 86


>gi|87123689|ref|ZP_01079539.1| DNA binding protein HU [Synechococcus sp. RS9917]
 gi|88807469|ref|ZP_01122981.1| DNA binding protein HU [Synechococcus sp. WH 7805]
 gi|116073586|ref|ZP_01470848.1| DNA binding protein HU [Synechococcus sp. RS9916]
 gi|148240264|ref|YP_001225651.1| DNA-binding protein HU [Synechococcus sp. WH 7803]
 gi|86168258|gb|EAQ69515.1| DNA binding protein HU [Synechococcus sp. RS9917]
 gi|88788683|gb|EAR19838.1| DNA binding protein HU [Synechococcus sp. WH 7805]
 gi|116068891|gb|EAU74643.1| DNA binding protein HU [Synechococcus sp. RS9916]
 gi|147848803|emb|CAK24354.1| DNA-binding protein HU [Synechococcus sp. WH 7803]
          Length = 91

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ D +  V      I DS V G+ + I  F +F  +++ +R G
Sbjct: 1  MNKADLVNLVAARTELTKTDVSLVVDAAIETIIDSVVEGKKVSILGFGSFEPRERSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T +++KI  +RV  F A  + K R+
Sbjct: 61 LNPKTGEKIKIPAKRVPAFTAGKMFKDRV 89


>gi|306820791|ref|ZP_07454416.1| DNA-binding protein HU [Eubacterium yurii subsp. margaretiae ATCC
          43715]
 gi|304551181|gb|EFM39147.1| DNA-binding protein HU [Eubacterium yurii subsp. margaretiae ATCC
          43715]
          Length = 102

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  I+++ GL++KDS   +      + ++ V+ E +++  F TF  +++ +R G
Sbjct: 1  MNKADLVSKIAEKSGLTKKDSETALNAFMASVEEALVKQEKVQLVGFGTFETRERAAREG 60

Query: 65 RNLQTNQ-EVKIDPRRVVVFKASSILKKRI 93
          RN +  + ++KI   +  VFKA   LK+++
Sbjct: 61 RNPRDPKVKIKIPASKAPVFKAGKGLKEKV 90


>gi|253581050|ref|ZP_04858311.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847713|gb|EES75682.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 92

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++KE  LS+KD    + +  + +      G  I++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAMAKETNLSKKDVEDVLKSFVDVVSKELKNGGKIQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + +KI+  +   FKA   LK
Sbjct: 61 RNPQTGETMKIEASKSPKFKAGKALK 86


>gi|238026537|ref|YP_002910768.1| integration host factor subunit beta [Burkholderia glumae BGR1]
 gi|237875731|gb|ACR28064.1| Integration host factor, beta subunit [Burkholderia glumae BGR1]
          Length = 108

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV  ++  F  L  KD+   V T+ + + D+  +G  I+I  F +F + ++ +RV
Sbjct: 1  MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V++  + V  FK    L++R+
Sbjct: 61 GRNPKSGEKVQVPEKYVPHFKPGKELRERV 90


>gi|83311888|ref|YP_422152.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1]
 gi|82946729|dbj|BAE51593.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum
           AMB-1]
          Length = 136

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++DLV +++   GLS+ D+ + V  +F  I  +   G+ +++  F TF V  + +  G
Sbjct: 47  VNKNDLVTAVAGAAGLSKADAAKAVDGVFEAITSALKGGDEVRLVGFGTFAVASRAASEG 106

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T +++ I   +   FKA   LK  I
Sbjct: 107 RNPRTGEKISIPASKQPKFKAGKGLKDGI 135


>gi|332703826|ref|ZP_08423914.1| histone family protein DNA-binding protein [Desulfovibrio
          africanus str. Walvis Bay]
 gi|332553975|gb|EGJ51019.1| histone family protein DNA-binding protein [Desulfovibrio
          africanus str. Walvis Bay]
          Length = 91

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 52/87 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K+++++  +   ++++ V    + I DS ++GE ++I  F +F +K+     G
Sbjct: 1  MNKSELIKTLAEDKDIHVDEASKIVNAFVDSIKDSLLQGERVEIRGFGSFKIKEYKGYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T   V ++P+R+  F+    LK+
Sbjct: 61 RNPKTGDIVDVEPKRLPFFRPGKELKE 87


>gi|238021485|ref|ZP_04601911.1| hypothetical protein GCWU000324_01385 [Kingella oralis ATCC
          51147]
 gi|237868465|gb|EEP69471.1| hypothetical protein GCWU000324_01385 [Kingella oralis ATCC
          51147]
          Length = 101

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I+++ GL++ D+ + V      + D+   G++I +  F TF V ++ +R G
Sbjct: 1  MNKSELIEAIAQQAGLTKTDAGKAVDAFTAVVKDALKSGDSIALVGFGTFKVAERAARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N +T + +KI   RV  F A   LK
Sbjct: 61 LNPRTKEAIKIPAARVPKFTAGKTLK 86


>gi|167646182|ref|YP_001683845.1| histone family protein DNA-binding protein [Caulobacter sp. K31]
 gi|167348612|gb|ABZ71347.1| histone family protein DNA-binding protein [Caulobacter sp. K31]
          Length = 92

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 8  SDLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          SDLV  +++ E  L++  +   +  +F  + D+AV+GE + I  F  F V+ K +R GRN
Sbjct: 4  SDLVDAAVAAEPKLTKTQAKALIDGVFKALSDAAVKGEEVSIPGFGKFKVQAKPARTGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
            T   ++I   + V F A+  LK  +
Sbjct: 64 PATGGTIEIAASKKVAFTAAKQLKDAV 90


>gi|258592137|emb|CBE68442.1| DNA-binding protein HU (DNA-binding protein II) (HB) [NC10
          bacterium 'Dutch sediment']
          Length = 93

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+  SI  E GL++K +   V    + + ++  +GE I++  F +F VK K +R G
Sbjct: 1  MTKADIA-SIVAERGLAKKQAMEAVEATLDIVKNALKKGEKIQLVGFGSFQVKAKRARKG 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN QT   + I  R+V+ FK    L
Sbjct: 60 RNPQTGDPITISARKVLKFKPGKAL 84


>gi|330815898|ref|YP_004359603.1| Integration host factor, beta subunit [Burkholderia gladioli BSR3]
 gi|327368291|gb|AEA59647.1| Integration host factor, beta subunit [Burkholderia gladioli BSR3]
          Length = 106

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 60/103 (58%), Gaps = 3/103 (2%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + D+  +G  I+I  F +F + ++ +RV
Sbjct: 1   MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN ++ ++V++  + V  FK    L++R+  D R  +  K+D
Sbjct: 61  GRNPKSGEKVQVPEKYVPHFKPGKELRERV--DGRAGEPLKND 101


>gi|315419719|gb|ADU15829.1| histone-like protein [Streptococcus gordonii]
          Length = 91

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  ++    L++KDS   V  +F  + +   +GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAAATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E+KI   +V  FKA   LK
Sbjct: 64 PQTGKEIKIAASKVPAFKAGKALK 87


>gi|312882504|ref|ZP_07742245.1| DNA-binding protein HU-beta [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369904|gb|EFP97415.1| DNA-binding protein HU-beta [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 90

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I++   LS+  + R +    + + D+   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVEKIAESADLSKASAGRALDAFIDAVGDTLQSGDQVALVGFGTFSVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E++I   +V  FKA   LK
Sbjct: 61 RNPKTGEEIQIAEAKVPSFKAGKALK 86


>gi|126662500|ref|ZP_01733499.1| DNA-binding protein HU [Flavobacteria bacterium BAL38]
 gi|126625879|gb|EAZ96568.1| DNA-binding protein HU [Flavobacteria bacterium BAL38]
          Length = 97

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 45/85 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  IS++ GL + D    V T   E+ +S   G+ + +  F +F +K +  + G
Sbjct: 1  MTKADIVAKISEKLGLEKGDVQATVETFMEEVKNSLETGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  +KI    +  FK + + 
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVF 85


>gi|237746993|ref|ZP_04577473.1| integration host factor subunit beta [Oxalobacter formigenes
          HOxBLS]
 gi|229378344|gb|EEO28435.1| integration host factor subunit beta [Oxalobacter formigenes
          HOxBLS]
          Length = 97

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ S++  +  L  KD+   V T+ + + D+   G+ I+I  F +F +  +  R+
Sbjct: 1  MTKSELIVSLANSYPQLLAKDAELTVKTILDAMADALADGQRIEIRGFGSFALSVRPPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V ++ +RV  FK    L++R+
Sbjct: 61 GRNPRSGEKVMVEEKRVPHFKPGKELRQRV 90


>gi|186475512|ref|YP_001856982.1| integration host factor subunit beta [Burkholderia phymatum
          STM815]
 gi|226709782|sp|B2JF07|IHFB_BURP8 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|184191971|gb|ACC69936.1| integration host factor, beta subunit [Burkholderia phymatum
          STM815]
          Length = 107

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV  ++  F  L  KD+   V T+ + + D+   G  I+I  F +F + ++ SRV
Sbjct: 1  MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALANGHRIEIRGFGSFGLNRRPSRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V +  + V  FK    L++R+
Sbjct: 61 GRNPKSGEKVLVPEKHVPHFKPGKELRERV 90


>gi|225626692|ref|ZP_03784731.1| integration host factor, beta subunit [Brucella ceti str. Cudo]
 gi|306842560|ref|ZP_07475211.1| integration host factor, beta subunit [Brucella sp. BO2]
 gi|225618349|gb|EEH15392.1| integration host factor, beta subunit [Brucella ceti str. Cudo]
 gi|306287416|gb|EFM58896.1| integration host factor, beta subunit [Brucella sp. BO2]
          Length = 117

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 2   SKTITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           SK + +S+LV+ I S+   L ++D    V  +F+EI ++   G  +++  F  F VK + 
Sbjct: 21  SKAVIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRP 80

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           +R GRN +T + V ++ + V  FK    L+ R+
Sbjct: 81  ARSGRNPRTGETVDVEEKWVPFFKTGKELRDRL 113


>gi|163781827|ref|ZP_02176827.1| hypothetical protein HG1285_03053 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883047|gb|EDP76551.1| hypothetical protein HG1285_03053 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 90

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  ++K+ G+++K++   +      I  +  +GE I I     F VK++ +R G
Sbjct: 1  MTKAELVAEVAKQAGITKKEADAALKAAVAAIAKALKKGERIAIPGLGIFTVKKRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T Q ++I  R+VV FK +  L++ I
Sbjct: 61 RNPRTGQVIQIPARKVVAFKPAKDLRESI 89


>gi|37520401|ref|NP_923778.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421]
 gi|35211394|dbj|BAC88773.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421]
          Length = 94

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 52/92 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LVK++++   ++ K++   ++ +F+EI D+   GE + +  F TF  +++  R G
Sbjct: 1  MNKGELVKAVAERTKITLKEADAVISAVFDEIQDTVAGGEKVTLVGFGTFEARKRAEREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +TN+++ I       F A    K+ ++ +
Sbjct: 61 RNPKTNEKMIIPATVAPAFSAGKTFKEAVLTN 92


>gi|269102132|ref|ZP_06154829.1| DNA-binding protein HU-beta [Photobacterium damselae subsp.
          damselae CIP 102761]
 gi|268162030|gb|EEZ40526.1| DNA-binding protein HU-beta [Photobacterium damselae subsp.
          damselae CIP 102761]
          Length = 90

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV  I++   +S+  + R +      + D+   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKTQLVDKIAENADISKASAGRALDAFIEAVSDTLKSGDQVALVGFGTFSVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I   +V  FKA   LK  +
Sbjct: 61 RNPQTGAEIQIAAAKVPGFKAGKALKDSV 89


>gi|254467848|ref|ZP_05081254.1| integration host factor, beta subunit [beta proteobacterium KB13]
 gi|207086658|gb|EDZ63941.1| integration host factor, beta subunit [beta proteobacterium KB13]
          Length = 92

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRS+L++ +S +F  L +KD+   V  + + +  +   G+ I+I  F +F + ++ +R+
Sbjct: 1  MTRSELIEKLSSQFQHLLQKDAELVVKNILDSMSSTLNNGKRIEIRGFGSFSLNKRPARI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++V I  + V  FKA   L+ R+
Sbjct: 61 GRNPKTGEKVHISEKLVPHFKAGKELRSRV 90


>gi|50120090|ref|YP_049257.1| transcriptional regulator HU subunit beta [Pectobacterium
          atrosepticum SCRI1043]
 gi|227113468|ref|ZP_03827124.1| transcriptional regulator HU subunit beta [Pectobacterium
          carotovorum subsp. brasiliensis PBR1692]
 gi|227328851|ref|ZP_03832875.1| transcriptional regulator HU subunit beta [Pectobacterium
          carotovorum subsp. carotovorum WPP14]
 gi|253687446|ref|YP_003016636.1| histone family protein DNA-binding protein [Pectobacterium
          carotovorum subsp. carotovorum PC1]
 gi|261822504|ref|YP_003260610.1| transcriptional regulator HU subunit beta [Pectobacterium
          wasabiae WPP163]
 gi|49610616|emb|CAG74061.1| DNA-binding protein HU-beta [Pectobacterium atrosepticum
          SCRI1043]
 gi|251754024|gb|ACT12100.1| histone family protein DNA-binding protein [Pectobacterium
          carotovorum subsp. carotovorum PC1]
 gi|261606517|gb|ACX89003.1| histone family protein DNA-binding protein [Pectobacterium
          wasabiae WPP163]
          Length = 90

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R +  +   + +S   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAADADISKAAAGRVLDAIIGSVTESLKEGDDVALVGFGTFSVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F+A   LK  +
Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKTLKDAV 89


>gi|256822124|ref|YP_003146087.1| integration host factor subunit beta [Kangiella koreensis DSM
          16069]
 gi|256795663|gb|ACV26319.1| integration host factor, beta subunit [Kangiella koreensis DSM
          16069]
          Length = 100

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S L++  + K   LS +D    V ++ +++ +S   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSQLIERLVDKNPQLSVRDVELVVKSMIDQMSESLSDGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + VK+D + V  FK    L++R+ D
Sbjct: 61 GRNPKTGESVKLDGKYVPHFKPGKELRERVND 92


>gi|206900402|ref|YP_002251223.1| non-specific DNA-binding protein [Dictyoglomus thermophilum
          H-6-12]
 gi|217967896|ref|YP_002353402.1| histone family protein DNA-binding protein [Dictyoglomus turgidum
          DSM 6724]
 gi|206739505|gb|ACI18563.1| non-specific DNA-binding protein [Dictyoglomus thermophilum
          H-6-12]
 gi|217336995|gb|ACK42788.1| histone family protein DNA-binding protein [Dictyoglomus turgidum
          DSM 6724]
          Length = 91

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 53/87 (60%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++ +  ++++  +++K++T+ V  +   I ++  +G+ ++   F TF V+++ +R GRN
Sbjct: 3  KAEFIAKVAEKAKITKKEATKVVNAVLETITEALSKGDTVQFVGFGTFSVRKRAAREGRN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           +T Q +KI   +V VF+    L++ +
Sbjct: 63 PRTQQPIKIPATKVPVFRPGKELREAV 89


>gi|330806808|ref|YP_004351270.1| DNA-binding protein, alpha subunit [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327374916|gb|AEA66266.1| Putative DNA-binding protein, alpha subunit [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 91

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L  +I+++  L+++ + R +  +  EI  +  R +++ +  F TF  + +G+R G+N
Sbjct: 3  KPELAAAIAEKADLTKEQANRVLNAVLEEITGALHRKDSVTLVGFGTFLQRHRGARTGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT + VKI     V FK    LK
Sbjct: 63 PQTGEPVKIKASNTVAFKPGKFLK 86


>gi|194476545|ref|YP_002048724.1| DNA binding protein HU [Paulinella chromatophora]
 gi|171191552|gb|ACB42514.1| DNA binding protein HU [Paulinella chromatophora]
          Length = 91

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ D +  V      I DS V G+ + I  F +F  +++ +R G
Sbjct: 1  MNKADLVNLVAARTELTKTDVSLVVDAAIETIIDSVVEGKKVSILGFGSFEPRERSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T +++KI  +RV  F A  + K R+
Sbjct: 61 LNPKTGEKIKIPAKRVPTFTAGKMFKDRV 89


>gi|237814623|ref|ZP_04593621.1| integration host factor, beta subunit [Brucella abortus str. 2308
           A]
 gi|237789460|gb|EEP63670.1| integration host factor, beta subunit [Brucella abortus str. 2308
           A]
          Length = 117

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 2   SKTITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           SK + +S+LV+ I S+   L ++D    V  +F+EI ++   G  +++  F  F VK + 
Sbjct: 21  SKAVIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRP 80

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           +R GRN +T + V ++ + V  FK    L+ R+
Sbjct: 81  ARSGRNPRTGETVDVEEKWVPFFKTGKKLRDRL 113


>gi|154505532|ref|ZP_02042270.1| hypothetical protein RUMGNA_03069 [Ruminococcus gnavus ATCC
          29149]
 gi|153794190|gb|EDN76610.1| hypothetical protein RUMGNA_03069 [Ruminococcus gnavus ATCC
          29149]
          Length = 91

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+++  +S+KD+ + +    + + +    GE +++  F TF V ++ +R G
Sbjct: 1  MNKTELIAAIAEQAEISKKDAEKALKAFVDVVTEQLKEGEKVQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + +KI   +   FKA   LK
Sbjct: 61 RNPQTGKTMKIAACKAPKFKAGKALK 86


>gi|293392542|ref|ZP_06636862.1| DNA-binding protein HU-beta [Serratia odorifera DSM 4582]
 gi|291424944|gb|EFE98153.1| DNA-binding protein HU-beta [Serratia odorifera DSM 4582]
          Length = 90

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + DS   G+ + +  F +F V+++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTDSLKEGDDVALVGFGSFTVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI   +V  F+A   LK  +
Sbjct: 61 RNPQTGKEIKIAAAKVPAFRAGKALKDAV 89


>gi|94497991|ref|ZP_01304555.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58]
 gi|94422574|gb|EAT07611.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58]
          Length = 96

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ +++E  GL+  +  R V   F EI D    G  +++  F  F  + + +R 
Sbjct: 1  MIRSELIQKLAEENPGLTVPEVERIVDLFFREIVDRLASGGRVELRGFGAFTTRARDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++V +  +RV  FK    +++R+
Sbjct: 61 GRNPRTGEQVPVCAKRVPYFKPGKEMRERL 90


>gi|218131482|ref|ZP_03460286.1| hypothetical protein BACEGG_03100 [Bacteroides eggerthii DSM
          20697]
 gi|217986414|gb|EEC52751.1| hypothetical protein BACEGG_03100 [Bacteroides eggerthii DSM
          20697]
          Length = 88

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 47/85 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++ E GLS+ DS R +      +  +   G+ + +  F TF V ++  RVG
Sbjct: 1  MNKSELISAMAAEAGLSKADSKRALDAFIASVTKALKAGDKVALVGFGTFSVTERAGRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N  T + ++I  ++V  F+A S L
Sbjct: 61 INPATKKPIQIPAKKVAKFRAGSEL 85


>gi|188996798|ref|YP_001931049.1| histone family protein DNA-binding protein [Sulfurihydrogenibium
          sp. YO3AOP1]
 gi|188931865|gb|ACD66495.1| histone family protein DNA-binding protein [Sulfurihydrogenibium
          sp. YO3AOP1]
          Length = 92

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+   +++ G+++  + R V      +  +  +GE + I     F+VKQ+ +R G
Sbjct: 1  MTKSELISKTAEKAGITKAAAERAVNAAIEAVVGALSKGERVAIPGLGVFNVKQRKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E+ I  R+VV F A+  LK
Sbjct: 61 RNPRTGKEITIPARKVVAFTAAKSLK 86


>gi|261493979|ref|ZP_05990487.1| DNA-binding protein HU [Mannheimia haemolytica serotype A2 str.
          BOVINE]
 gi|261494737|ref|ZP_05991216.1| DNA-binding protein HU [Mannheimia haemolytica serotype A2 str.
          OVINE]
 gi|261309554|gb|EEY10778.1| DNA-binding protein HU [Mannheimia haemolytica serotype A2 str.
          OVINE]
 gi|261310411|gb|EEY11606.1| DNA-binding protein HU [Mannheimia haemolytica serotype A2 str.
          BOVINE]
          Length = 90

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+    L++KD+   +    + I  S   G+A+++  F TF V ++ +R G
Sbjct: 1  MNKTELIDAIAAGANLTKKDAKAALEATLDAISASLKAGDAVQLIGFGTFKVNERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E+KI   +V  F +   LK
Sbjct: 61 RNPKTGEEIKIAAAKVPAFVSGKALK 86


>gi|119470902|ref|ZP_01613486.1| DNA-binding protein HU-beta (NS1) (HU-1) [Alteromonadales
          bacterium TW-7]
 gi|119445924|gb|EAW27204.1| DNA-binding protein HU-beta (NS1) (HU-1) [Alteromonadales
          bacterium TW-7]
          Length = 91

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I+ +  +S+  +TR +      +  +   G+++ +  F TF VK++ +R G
Sbjct: 1  MNKAQLVEKIATDAEISKAAATRALDAFTGAVTSALKEGDSVALVGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I    +  FKA   LK ++
Sbjct: 61 RNPQTGAEIQIAAATIPSFKAGKGLKDQV 89


>gi|17546433|ref|NP_519835.1| DNA-binding protein HU-beta [Ralstonia solanacearum GMI1000]
 gi|207723583|ref|YP_002253982.1| dna-binding protein hu-beta [Ralstonia solanacearum MolK2]
 gi|207743053|ref|YP_002259445.1| dna-binding protein hu-beta [Ralstonia solanacearum IPO1609]
 gi|300691407|ref|YP_003752402.1| DNA-binding protein HU-beta, transcriptional regulator, beta
          subunit [Ralstonia solanacearum PSI07]
 gi|300703975|ref|YP_003745577.1| DNA-binding protein hu-beta, transcriptional regulator subunit
          beta [Ralstonia solanacearum CFBP2957]
 gi|17428731|emb|CAD15416.1| probable dna-binding protein hu-beta [Ralstonia solanacearum
          GMI1000]
 gi|206588785|emb|CAQ35748.1| dna-binding protein hu-beta [Ralstonia solanacearum MolK2]
 gi|206594450|emb|CAQ61377.1| dna-binding protein hu-beta [Ralstonia solanacearum IPO1609]
 gi|299071638|emb|CBJ42962.1| DNA-binding protein HU-beta, transcriptional regulator, beta
          subunit [Ralstonia solanacearum CFBP2957]
 gi|299078467|emb|CBJ51119.1| DNA-binding protein HU-beta, transcriptional regulator, beta
          subunit [Ralstonia solanacearum PSI07]
          Length = 90

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  ++ +  +S+  + R +  L   I D+   G ++ +  F TF V Q+ +R G
Sbjct: 1  MNKTDLIDHVAAQTDMSKAAAGRAIDALIGGIKDALCDGGSVTLVGFGTFLVGQRSARAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI+  +V  FK    LK
Sbjct: 61 RNPRTGATIKIEGAKVAKFKPGKALK 86


>gi|91217978|ref|ZP_01254930.1| DNA-binding protein HU [Psychroflexus torquis ATCC 700755]
 gi|91183836|gb|EAS70227.1| DNA-binding protein HU [Psychroflexus torquis ATCC 700755]
          Length = 96

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V +IS + GL + +    V T  +E+ +S   G+ + +  F +F VK +  + G
Sbjct: 1  MTKADIVANISDKLGLEKGEVQATVETFMDEVKNSLEGGDNVYLRGFGSFIVKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  +KI    +  FK + I 
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKIF 85


>gi|227495757|ref|ZP_03926068.1| DNA-binding protein HU [Actinomyces urogenitalis DSM 15434]
 gi|226834686|gb|EEH67069.1| DNA-binding protein HU [Actinomyces urogenitalis DSM 15434]
          Length = 93

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 51/90 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R++L+ +I+++ GL++ D+  F+      + ++  +GEA+KI+        ++ +R 
Sbjct: 2  SVNRTELIAAIAEKAGLTKTDADAFLGAFQEVLVENVAKGEAVKITGLMGVERVERAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E++I     V     S LKK +
Sbjct: 62 GRNPRTGEEIQIPAGYGVKLTVGSALKKAV 91


>gi|301061082|ref|ZP_07201879.1| putative integration host factor subunit alpha [delta
          proteobacterium NaphS2]
 gi|300444876|gb|EFK08844.1| putative integration host factor subunit alpha [delta
          proteobacterium NaphS2]
          Length = 93

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 51/90 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+  +++ I K+    + +  R   +L   +  +   GE I IS F  F V++K +R 
Sbjct: 2  TLTKERIIERIWKDTDQKKAEIQRTFESLVEIMKQTLASGEDIMISGFGKFCVREKKARR 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QT + + +D R+VV FK S  L++++
Sbjct: 62 GRNPQTGEAMDLDGRKVVTFKCSGKLREKL 91


>gi|254785728|ref|YP_003073157.1| DNA-binding protein HU-beta [Teredinibacter turnerae T7901]
 gi|239918950|gb|ACR13101.2| DNA-binding protein HU-beta [Teredinibacter turnerae T7901]
          Length = 90

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV++I+    +S+  + R +  +   I ++   G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSELVEAIAASADISKAAAGRALDAVTESIANALKEGDQVALVGFGTFLVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I   ++  FKA   LK  +
Sbjct: 61 RNPQTGDPIEIAAAKIPSFKAGKALKDAV 89


>gi|117924222|ref|YP_864839.1| HU family DNA-binding protein [Magnetococcus sp. MC-1]
 gi|117607978|gb|ABK43433.1| HU family DNA-binding protein [Magnetococcus sp. MC-1]
          Length = 91

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 47/86 (54%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
           +L K ++ + G+S+ D+ R V      I +S  +   + +  F TF V ++ +R GRN 
Sbjct: 4  GELKKIVADKTGMSQADAGRAVAATLEAISESLGQSATVSLLGFGTFSVGERAAREGRNP 63

Query: 68 QTNQEVKIDPRRVVVFKASSILKKRI 93
          QT +++ I   R + FKA   L++++
Sbjct: 64 QTGEKINISASRTIRFKAGQSLREKV 89


>gi|317476442|ref|ZP_07935691.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316907468|gb|EFV29173.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 88

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 47/85 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++ E GLS+ DS R +      +  +   G+ + +  F TF V ++  RVG
Sbjct: 1  MNKSELISAMAAEAGLSKADSKRALDAFIASVTTALKAGDKVALVGFGTFSVTERAGRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N  T + ++I  ++V  F+A S L
Sbjct: 61 INPATKKPIQIPAKKVAKFRAGSEL 85


>gi|83643450|ref|YP_431885.1| nucleoid DNA-binding protein [Hahella chejuensis KCTC 2396]
 gi|83631493|gb|ABC27460.1| Bacterial nucleoid DNA-binding protein [Hahella chejuensis KCTC
          2396]
          Length = 91

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L  +I+    LS+  +   +  L +EI D+  R E + +  F TF  + + +R G+N
Sbjct: 3  KPELAAAIAARTNLSKSKAAEVLNALTDEIADAVSRNETVSLIGFGTFSQRNRSARTGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           +T   +KI   + V FKA  +LK
Sbjct: 63 PKTGAAIKIPASKTVGFKAGKLLK 86


>gi|260582305|ref|ZP_05850098.1| integration host factor, beta subunit [Haemophilus influenzae
           NT127]
 gi|260094673|gb|EEW78568.1| integration host factor, beta subunit [Haemophilus influenzae
           NT127]
          Length = 116

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 48/91 (52%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           K + ++DL+ +I+    L++K +   +    + I  S   GE +++  F TF V ++ +R
Sbjct: 25  KFMNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAAR 84

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            GRN QT  E++I   +V  F +   LK  I
Sbjct: 85  TGRNPQTGAEIQIAASKVPAFVSGKALKDAI 115


>gi|307292720|ref|ZP_07572566.1| histone family protein DNA-binding protein [Sphingobium
          chlorophenolicum L-1]
 gi|306880786|gb|EFN12002.1| histone family protein DNA-binding protein [Sphingobium
          chlorophenolicum L-1]
          Length = 90

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+ ++++  GLS+ D+++ V  +F+ I  +  +G+ +++  F TF V Q+ +  G
Sbjct: 1  MNKQDLIGAVAESSGLSKSDASKAVEGVFDAITGALKKGDEVRLVGFGTFSVSQRKASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I       FKA   LK  +
Sbjct: 61 RNPRTGETMTIKASAQPKFKAGKGLKDSV 89


>gi|296876928|ref|ZP_06900973.1| DNA-binding protein HU [Streptococcus parasanguinis ATCC 15912]
 gi|296432059|gb|EFH17861.1| DNA-binding protein HU [Streptococcus parasanguinis ATCC 15912]
          Length = 91

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 51/87 (58%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F  + +   +GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT +E++I   +V  FKA   LK+ +
Sbjct: 64 PQTGKEIEIAASKVPAFKAGKALKEAV 90


>gi|260580507|ref|ZP_05848335.1| integration host factor, beta subunit [Haemophilus influenzae RdAW]
 gi|260092849|gb|EEW76784.1| integration host factor, beta subunit [Haemophilus influenzae RdAW]
          Length = 112

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 48/91 (52%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           K + ++DL+ +I+    L++K +   +    + I  S   GE +++  F TF V ++ +R
Sbjct: 21  KFMNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAAR 80

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            GRN QT  E++I   +V  F +   LK  I
Sbjct: 81  TGRNPQTGAEIQIAASKVPAFVSGKALKDAI 111


>gi|145588688|ref|YP_001155285.1| integration host factor, beta subunit [Polynucleobacter
          necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047094|gb|ABP33721.1| integration host factor, beta subunit [Polynucleobacter
          necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 114

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query: 2  SKTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           + ITRS+LV+S++++F  L  +D    V TL + +  +   G+ I++    +F +  + 
Sbjct: 6  QQAITRSELVESLAEQFPQLLPRDVELAVKTLLDTMTQALAEGKRIELRGVGSFVLHHRP 65

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +R GRN ++ ++V I  +RV  FK    L++R+
Sbjct: 66 ARTGRNPKSGEKVLIPEKRVPHFKPGKELRERV 98


>gi|294012154|ref|YP_003545614.1| DNA-binding protein HU-beta [Sphingobium japonicum UT26S]
 gi|292675484|dbj|BAI97002.1| DNA-binding protein HU-beta [Sphingobium japonicum UT26S]
          Length = 90

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+ ++++  GLS+ D+++ V  +F+ I  +  +G+ +++  F TF V Q+ +  G
Sbjct: 1  MNKQDLISAVAESSGLSKSDASKAVEGVFDAITGALKKGDEVRLVGFGTFSVSQRKASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I       FKA   LK  +
Sbjct: 61 RNPRTGETMTIKASAQPKFKAGKGLKDSV 89


>gi|257469846|ref|ZP_05633938.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
 gi|317064075|ref|ZP_07928560.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
 gi|313689751|gb|EFS26586.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
          Length = 90

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V+  +K  G ++K++ R V      + D+ V+G+ I    +  + VK++ +R  
Sbjct: 1  MTKKEFVELYAKNGGFTKKEAERAVNLFLASVEDTLVKGDDITFVGWGKWEVKERAAREV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QTN++++I+ ++ V FK    L  ++
Sbjct: 61 RNPQTNKKMRIEAKKAVKFKVGKTLADKV 89


>gi|253584037|ref|ZP_04861235.1| DNA-binding protein HU [Fusobacterium varium ATCC 27725]
 gi|251834609|gb|EES63172.1| DNA-binding protein HU [Fusobacterium varium ATCC 27725]
          Length = 91

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+ D  K++  K   +S+ +S R V  +  EI +    GE +    +  F V QK  R+
Sbjct: 1  MTKKDFAKALFEKGIFVSKAESERKVEAILTEIEEVLKSGEELNFIGWGKFEVVQKAERM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+KI+ ++ V FKA   L  +I
Sbjct: 61 GRNPKTGEEIKIEAKKSVKFKAGKTLVDKI 90


>gi|83814878|ref|YP_445501.1| DNA-binding protein HU [Salinibacter ruber DSM 13855]
 gi|83756272|gb|ABC44385.1| DNA-binding protein HU [Salinibacter ruber DSM 13855]
          Length = 100

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++T++DL+  I+   GL++ ++   V      +  +   G  I++  F  F V+ +  R 
Sbjct: 2  SMTKADLIDQIADGTGLTKIETRAVVEGFMTAVRGAMKEGRRIELREFGVFEVQHRAPRT 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QTN+ V+I+ R   VF+ S  L + +
Sbjct: 62 GRNPQTNEPVEIEDRYKPVFRPSDKLSEAV 91


>gi|320534610|ref|ZP_08035057.1| DNA-binding protein HU [Actinomyces sp. oral taxon 171 str.
          F0337]
 gi|325068381|ref|ZP_08127054.1| histone family protein DNA-binding protein [Actinomyces oris K20]
 gi|326773734|ref|ZP_08233017.1| DNA-binding protein HU [Actinomyces viscosus C505]
 gi|329947427|ref|ZP_08294631.1| DNA-binding protein HU-alpha [Actinomyces sp. oral taxon 170 str.
          F0386]
 gi|320133176|gb|EFW25677.1| DNA-binding protein HU [Actinomyces sp. oral taxon 171 str.
          F0337]
 gi|326636964|gb|EGE37867.1| DNA-binding protein HU [Actinomyces viscosus C505]
 gi|328525177|gb|EGF52228.1| DNA-binding protein HU-alpha [Actinomyces sp. oral taxon 170 str.
          F0386]
          Length = 93

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 53/92 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R++L+ +I+++ GL++ D+  F+    + + ++  +GEA+KI+        ++ +R 
Sbjct: 2  SVNRTELIAAIAEKAGLTKTDADAFLGAFQDVLVENVAKGEAVKITGLMGIERVERAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +E++I     V     S LKK + +
Sbjct: 62 GRNPRTGEEIQIPAGYGVKVTVGSSLKKAVAE 93


>gi|223986260|ref|ZP_03636274.1| hypothetical protein HOLDEFILI_03584 [Holdemania filiformis DSM
          12042]
 gi|223961755|gb|EEF66253.1| hypothetical protein HOLDEFILI_03584 [Holdemania filiformis DSM
          12042]
          Length = 94

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 49/93 (52%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS+ + +  LV  ++ + G+++K +   V  +F+EI  +   G  + IS F  F VK + 
Sbjct: 1  MSELLNKKALVDIVANQMGMTKKAAGETVDLIFDEITSTLKDGGKVDISGFGKFEVKTRA 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R G N  T +++ +   +V  FKA+  LK  +
Sbjct: 61 ERTGINPATKEKITVPATKVPGFKAAKALKDAV 93


>gi|149186802|ref|ZP_01865112.1| histone-like protein [Erythrobacter sp. SD-21]
 gi|148829469|gb|EDL47910.1| histone-like protein [Erythrobacter sp. SD-21]
          Length = 90

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ ++++  GLS+ D++  V  +F+ I  S  +G+ +++  F TF V ++ +  G
Sbjct: 1  MNKNDLIGAVAEASGLSKSDASSAVEGVFDAITKSLSKGDEVRLVGFGTFSVAKRKASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I       FKA   LK  +
Sbjct: 61 RNPRTGEPMNIPASNQPKFKAGKGLKDAV 89


>gi|146299294|ref|YP_001193885.1| histone family protein DNA-binding protein [Flavobacterium
          johnsoniae UW101]
 gi|146153712|gb|ABQ04566.1| histone family protein DNA-binding protein [Flavobacterium
          johnsoniae UW101]
          Length = 96

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  IS++ GL + D    V T   E+  S   G+ + +  F +F VK +  + G
Sbjct: 1  MTKADIVAKISEKLGLEKGDVQATVETFMEEVKTSLETGDNVYLRGFGSFIVKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  +KI    +  FK + + 
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVF 85


>gi|94312469|ref|YP_585679.1| HU family DNA-binding protein [Cupriavidus metallidurans CH34]
 gi|93356321|gb|ABF10410.1| histone-like DNA-binding protein (HU) [Cupriavidus metallidurans
          CH34]
          Length = 92

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++L+ +I+    GL++  + + +      I D+  +GE + +  F TF   ++G R+
Sbjct: 1  MTKTELIDAIAAGVDGLTKAKAEQALNVTLGAIMDAVAKGETLSLIGFGTFSKGERGERM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
           RN +T +E+K++  + V FKA    K
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFK 87


>gi|115522479|ref|YP_779390.1| integration host factor subunit beta [Rhodopseudomonas palustris
          BisA53]
 gi|122297854|sp|Q07UH4|IHFB_RHOP5 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|115516426|gb|ABJ04410.1| integration host factor, beta subunit [Rhodopseudomonas palustris
          BisA53]
          Length = 102

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  +  EI  +  RG+ +++  F  F VK + +R 
Sbjct: 1  MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVAALARGDRVELRGFGAFSVKHRPARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V ++ + V  FK    +++R+  D
Sbjct: 61 GRNPRTGEHVPVEQKSVPFFKTGKEMRERLNRD 93


>gi|332520146|ref|ZP_08396610.1| histone family protein DNA-binding protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332044705|gb|EGI80899.1| histone family protein DNA-binding protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 96

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 7/101 (6%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++DLV  IS++ G+ + D    V T   E+  S   G+ + +  F +F +K +  + G
Sbjct: 1   MTKADLVAKISEKLGIEKGDVQATVETFMEEVKTSLEAGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           RN+  N  +KI    +  FK + +        + G K N D
Sbjct: 61  RNISKNTTIKIPAHNIPAFKPAKVF-------VEGVKTNVD 94


>gi|330721962|gb|EGG99900.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC2047]
          Length = 90

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+ E  +S+  + R +    + + +   +G  + +  F TF VK + +R G
Sbjct: 1  MNKSELIDAIAAEADISKASAGRALDAAVDAVTNELKKGGQVSLVGFGTFSVKDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + ++I   ++  FKA   LK
Sbjct: 61 RNPQTGETIQIKAAKIPSFKAGKALK 86


>gi|86157913|ref|YP_464698.1| histone-like DNA-binding protein [Anaeromyxobacter dehalogenans
          2CP-C]
 gi|197122784|ref|YP_002134735.1| histone family protein DNA-binding protein [Anaeromyxobacter sp.
          K]
 gi|220917567|ref|YP_002492871.1| histone family protein DNA-binding protein [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|85774424|gb|ABC81261.1| Histone-like DNA-binding protein [Anaeromyxobacter dehalogenans
          2CP-C]
 gi|196172633|gb|ACG73606.1| histone family protein DNA-binding protein [Anaeromyxobacter sp.
          K]
 gi|219955421|gb|ACL65805.1| histone family protein DNA-binding protein [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 90

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T++DL++ +      LS++     V ++F  +     + +   +  F TF VK++  RV
Sbjct: 1  MTKADLIEKVQALHDDLSKRQVALLVDSVFEHLAKGIRKDKRFTMPGFGTFVVKRRAGRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QT  E++I P + V FK +  LKK +
Sbjct: 61 GRNPQTGAEIQIAPTKTVGFKPAPELKKAL 90


>gi|225420306|ref|ZP_03762609.1| hypothetical protein CLOSTASPAR_06649 [Clostridium asparagiforme
          DSM 15981]
 gi|225041123|gb|EEG51369.1| hypothetical protein CLOSTASPAR_06649 [Clostridium asparagiforme
          DSM 15981]
          Length = 91

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  LS+KD+ + V    + + +  V+GE +++  F  F V  + +RV 
Sbjct: 1  MNKTELIAAVAEKAELSKKDAEKAVKAFTDVVTEELVKGEKVQLVGFGNFEVSARAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + + ++  +   FKA   LK
Sbjct: 61 RNPKTGEPMNVEASKTPKFKAGKALK 86


>gi|90407137|ref|ZP_01215325.1| Bacterial nucleoid DNA-binding protein [Psychromonas sp. CNPT3]
 gi|90311713|gb|EAS39810.1| Bacterial nucleoid DNA-binding protein [Psychromonas sp. CNPT3]
          Length = 91

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV  I+++  L++  +   V  +   I DS   GE +++  F TF V  + +R+G
Sbjct: 1  MNKTQLVAQIAEKSELTKVQAKAAVEQILASITDSLKDGEPVQLIGFGTFKVNHRAARIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT ++++I    V  F A   LK+ +
Sbjct: 61 RNPQTGEDIQIKAANVPAFVAGKALKESV 89


>gi|295094507|emb|CBK83598.1| Bacterial nucleoid DNA-binding protein [Coprococcus sp. ART55/1]
          Length = 90

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+++  LS+KD+   +    + + D   +GE I++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAIAEKTELSKKDAEAALKAFTDVVADELKKGEKIQLVGFGTFEVSERPAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I   +   FKA   LK  I
Sbjct: 61 RNPRTGETMTIAASKAPKFKAGKALKDSI 89


>gi|289549079|ref|YP_003474067.1| histone family protein DNA-binding protein [Thermocrinis albus
          DSM 14484]
 gi|289182696|gb|ADC89940.1| histone family protein DNA-binding protein [Thermocrinis albus
          DSM 14484]
          Length = 90

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 53/87 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV +I+K  G+++K++   +      + D+  +GE + I  F  F V+Q+ +R G
Sbjct: 1  MTKAELVSAIAKGAGITKKEADAALKAAVAAVADALKKGERVAIPGFGIFTVRQRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T   + I  R+VVVF+ +  L++
Sbjct: 61 RNPRTGAVINIPARKVVVFRPAKDLRE 87


>gi|260773191|ref|ZP_05882107.1| DNA-binding protein HU-beta [Vibrio metschnikovii CIP 69.14]
 gi|260612330|gb|EEX37533.1| DNA-binding protein HU-beta [Vibrio metschnikovii CIP 69.14]
          Length = 90

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I++   +S+  + R +      + D+   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVEKIAENADISKASAGRALDAFIEAVTDTLQSGDQVALVGFGTFSVRSRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E++I   +V  FKA   LK
Sbjct: 61 RNPKTGEEIQIAEAKVPAFKAGKALK 86


>gi|260596812|ref|YP_003209383.1| DNA-binding protein HU-beta [Cronobacter turicensis z3032]
 gi|260215989|emb|CBA28644.1| DNA-binding protein HU-beta [Cronobacter turicensis z3032]
          Length = 113

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 47/86 (54%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +S L+  I+    +S+  + R +  L + + +S   G+ + +  F TF V+++ +R G
Sbjct: 24  VNKSQLIDKIAAGADISKAAAGRALDALIDSVTESLQSGDEVALVGFGTFAVRERAARTG 83

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILK 90
           RN QT +E+ I   +V  F+A   LK
Sbjct: 84  RNPQTGKEITIAAAKVPGFRAGKALK 109


>gi|323498279|ref|ZP_08103281.1| DNA-binding protein HU-beta [Vibrio sinaloensis DSM 21326]
 gi|323316707|gb|EGA69716.1| DNA-binding protein HU-beta [Vibrio sinaloensis DSM 21326]
          Length = 90

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I++   LS+  + R +  L   + ++   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVEKIAENADLSKASAGRALDALIEAVGETLQSGDQVALVGFGTFSVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E++I   +V  FKA   LK
Sbjct: 61 RNPKTGEEIQIAEAKVPSFKAGKALK 86


>gi|307706517|ref|ZP_07643324.1| DNA-binding protein HU [Streptococcus mitis SK321]
 gi|322376730|ref|ZP_08051223.1| DNA-binding protein HU [Streptococcus sp. M334]
 gi|307617972|gb|EFN97132.1| DNA-binding protein HU [Streptococcus mitis SK321]
 gi|321282537|gb|EFX59544.1| DNA-binding protein HU [Streptococcus sp. M334]
          Length = 91

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F  + D    GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVEAVFAAVADYLAAGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E+ I   +V  FKA   LK
Sbjct: 64 PQTGKEITIAASKVPAFKAGKALK 87


>gi|291326896|ref|ZP_06126254.2| DNA-binding protein HU-beta [Providencia rettgeri DSM 1131]
 gi|291312425|gb|EFE52878.1| DNA-binding protein HU-beta [Providencia rettgeri DSM 1131]
          Length = 96

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  +S+  + R V      +  S  +G+ + +  F TF V+++ +R G
Sbjct: 6  VNKAQLIDQIASDANISKAAAGRVVDAFVATVTGSLSKGDDVALVGFGTFSVRERAARTG 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI   +V  F+    LK  +
Sbjct: 66 RNPQTGKEIKIAAAKVPAFRPGKGLKDAV 94


>gi|78187799|ref|YP_375842.1| histone-like DNA-binding protein [Chlorobium luteolum DSM 273]
 gi|78167701|gb|ABB24799.1| Histone-like DNA-binding protein [Chlorobium luteolum DSM 273]
          Length = 91

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++++LV+ I+ +  L++ D+ R V    N +  S   G+ + +  F TF    + +R G
Sbjct: 1  MSKAELVEKIAAQAKLTKVDAERAVNAFINVVTSSLKGGDDVTLVGFGTFTTGDRAARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I  ++VV FK    LK  +
Sbjct: 61 RNPQTGKAITIPAKKVVKFKPGKALKDEV 89


>gi|332534858|ref|ZP_08410681.1| DNA-binding protein HU-alpha [Pseudoalteromonas haloplanktis
          ANT/505]
 gi|332035718|gb|EGI72206.1| DNA-binding protein HU-alpha [Pseudoalteromonas haloplanktis
          ANT/505]
          Length = 89

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+++  L++KDS   +++L   I  S   G+ ++I+ F TF +    +R G
Sbjct: 1  MNKAELVAAIAQKSELTKKDSQAALSSLQKVITKSLSEGDQVQINGFGTFALSYYPARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT   ++I+     VFK +  LK
Sbjct: 61 RNPQTGAAIEIEGANKAVFKPAKALK 86


>gi|294507387|ref|YP_003571445.1| Histone-like bacterial DNA-binding protein [Salinibacter ruber
          M8]
 gi|294343715|emb|CBH24493.1| Histone-like bacterial DNA-binding protein [Salinibacter ruber
          M8]
          Length = 100

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++T++DL+  I+   GL++ ++   V      +  +   G  I++  F  F V+ +  R 
Sbjct: 2  SMTKADLIDQIADGTGLTKIETRAVVEGFMTAVRGAMKEGRRIELREFGVFEVQHRAPRT 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QTN+ V+I+ R   VF+ S  L + +
Sbjct: 62 GRNPQTNEPVEIEDRYKPVFRPSDKLSEAV 91


>gi|120435797|ref|YP_861483.1| histone-like DNA-binding protein [Gramella forsetii KT0803]
 gi|117577947|emb|CAL66416.1| histone-like bacterial DNA-binding protein [Gramella forsetii
          KT0803]
          Length = 90

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ ++++  G+S+  + + + +    +  S  +G+ + +  F ++ V ++ +R G
Sbjct: 1  MNKTDLIDAMAENAGISKAAAKKALESFLENVEKSLKKGDRVSLVGFGSWSVSKRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + +KI  + VV FKA + L+K +
Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGADLQKAV 89


>gi|148263534|ref|YP_001230240.1| histone family protein DNA-binding protein [Geobacter
          uraniireducens Rf4]
 gi|146397034|gb|ABQ25667.1| histone family protein DNA-binding protein [Geobacter
          uraniireducens Rf4]
          Length = 93

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV  + +  G LSRK+S   ++ +F+ +C++   GE ++I  F +F ++ + +R 
Sbjct: 1  MTKSELVDKLVEVNGILSRKESEAIISIVFDSMCEALKSGEKVEIRGFGSFTIRDREARE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN ++ + VKI  ++   FK    L++R+
Sbjct: 61 ARNPKSGEIVKIASKKTPFFKTGKELRERV 90


>gi|94707|pir||S12888 DNA-binding protein II - Thermus aquaticus
 gi|227284|prf||1701290A DNA binding protein II
          Length = 95

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 49/91 (53%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+T++DLV  +++  GL   D    V  L  ++ ++   G  ++++ F TF V+++ +R
Sbjct: 4  KTVTKADLVDQVAQATGLKLLDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           G    T +++KI   +   FK    LK ++
Sbjct: 64 TGVKPGTKEKIKIPATQYPAFKPGKALKDKV 94


>gi|156935007|ref|YP_001438923.1| transcriptional regulator HU subunit beta [Cronobacter sakazakii
          ATCC BAA-894]
 gi|156533261|gb|ABU78087.1| hypothetical protein ESA_02858 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 90

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  L + + +S   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDALIDSVTESLQSGDEVALVGFGTFSVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F+A   LK  +
Sbjct: 61 RNPQTGKEITIAAAKVPGFRAGKALKDAV 89


>gi|117617689|ref|YP_858134.1| DNA-binding protein HU-alpha [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
 gi|145300512|ref|YP_001143353.1| DNA-binding protein HU alpha [Aeromonas salmonicida subsp.
          salmonicida A449]
 gi|7288222|gb|AAF45030.1|AF146598_1 putative DNA-binding protein HU [Aeromonas hydrophila]
 gi|42768703|gb|AAS45567.1| putative DNA-binding protein HU [Aeromonas hydrophila]
 gi|117559096|gb|ABK36044.1| DNA-binding protein HU-alpha [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
 gi|142853284|gb|ABO91605.1| DNA-binding protein HU alpha [Aeromonas salmonicida subsp.
          salmonicida A449]
          Length = 98

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV +I+ +  LS+  +   +  + N I  S   G+A+++  F TF V  +  R G
Sbjct: 9  MNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVNHRAGRTG 68

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I    V  F A   LK  +
Sbjct: 69 RNPQTGKEIQIAAANVPSFVAGKALKDAV 97


>gi|315123478|ref|YP_004065484.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas sp.
          SM9913]
 gi|315017238|gb|ADT70575.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas sp.
          SM9913]
          Length = 91

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ IS +  +S+  +TR +      +  S   G ++ +  F TF VK++ +R G
Sbjct: 1  MNKAQLVEKISTDAEISKAAATRALDAFTGAVTSSLKEGNSVALVGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I    +  FK    LK ++
Sbjct: 61 RNPQTGAEIQISAATIPSFKPGKGLKDQV 89


>gi|307822661|ref|ZP_07652892.1| histone family protein DNA-binding protein [Methylobacter
          tundripaludum SV96]
 gi|307736265|gb|EFO07111.1| histone family protein DNA-binding protein [Methylobacter
          tundripaludum SV96]
          Length = 90

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I++   L++ D+ R +      +  +   G+++ +  F T+ VK++  R G
Sbjct: 1  MNKSELIDAIAESAELTKADAGRALDGFIGAVTKALSSGDSVALVGFGTYAVKERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E+ I   ++  FKA   LK  +
Sbjct: 61 RNPQTGAEITIKAAKIPSFKAGKSLKDAV 89


>gi|251790645|ref|YP_003005366.1| transcriptional regulator HU subunit beta [Dickeya zeae Ech1591]
 gi|271499600|ref|YP_003332625.1| histone family protein DNA-binding protein [Dickeya dadantii
          Ech586]
 gi|307129930|ref|YP_003881946.1| HU, DNA-binding transcriptional regulator, subunit beta [Dickeya
          dadantii 3937]
 gi|247539266|gb|ACT07887.1| histone family protein DNA-binding protein [Dickeya zeae Ech1591]
 gi|270343155|gb|ACZ75920.1| histone family protein DNA-binding protein [Dickeya dadantii
          Ech586]
 gi|306527459|gb|ADM97389.1| HU, DNA-binding transcriptional regulator, beta subunit [Dickeya
          dadantii 3937]
          Length = 90

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R +  +   + +S   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAADADISKAAAGRVLDAIIGSVTESLKAGDDVALVGFGTFSVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F+A   LK  +
Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKALKDSV 89


>gi|254252926|ref|ZP_04946244.1| Integration host factor [Burkholderia dolosa AUO158]
 gi|124895535|gb|EAY69415.1| Integration host factor [Burkholderia dolosa AUO158]
          Length = 107

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV  ++  F  L  KD+   V T+ + + D+  +G  I+I  F +F + ++ +RV
Sbjct: 1  MTKSELVAQLALRFPQLVLKDADFAVKTMLDAMSDALAKGHRIEIRGFGSFGLNRRPARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V++  + V  FK    L++R+
Sbjct: 61 GRNPKSGEKVQVPEKFVPHFKPGKELRERV 90


>gi|121997363|ref|YP_001002150.1| integration host factor subunit beta [Halorhodospira halophila
          SL1]
 gi|166918550|sp|A1WUI6|IHFB_HALHL RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|121588768|gb|ABM61348.1| integration host factor, beta subunit [Halorhodospira halophila
          SL1]
          Length = 102

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+++I SK+  L+ KD    V  +   + ++   G+ I+I  F +F +  + +R+
Sbjct: 1  MTKSELIEAIASKQPHLAHKDVEDAVKKMLEHMSETLANGKRIEIRGFGSFSLHHRPARM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  + V  FK    L++R+
Sbjct: 61 GRNPKTGEPVALPAKYVPHFKPGKELRERV 90


>gi|315419723|gb|ADU15831.1| histone-like protein [Streptococcus mitis]
          Length = 91

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F  + D    GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVEAVFAAVADYLAAGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E+ I   +V  FKA   LK
Sbjct: 64 PQTGKEITIAASKVPAFKAGKALK 87


>gi|261415071|ref|YP_003248754.1| histone family protein DNA-binding protein [Fibrobacter
          succinogenes subsp. succinogenes S85]
 gi|261371527|gb|ACX74272.1| histone family protein DNA-binding protein [Fibrobacter
          succinogenes subsp. succinogenes S85]
 gi|302326666|gb|ADL25867.1| DNA-binding protein HU [Fibrobacter succinogenes subsp.
          succinogenes S85]
          Length = 124

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          IT+  L++ I+K  G  R D    V    + + +  + G  I+I  F TF  K + +R  
Sbjct: 4  ITKQSLIQEIAKSTGFVRNDIKIVVEQFLDLLGEKLIEGNTIEIRGFGTFACKPRKARPA 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + V ID R V  FK S+ +K +I
Sbjct: 64 RNPRTGETVLIDERLVPTFKFSNDIKDKI 92


>gi|163814658|ref|ZP_02206047.1| hypothetical protein COPEUT_00809 [Coprococcus eutactus ATCC
          27759]
 gi|158450293|gb|EDP27288.1| hypothetical protein COPEUT_00809 [Coprococcus eutactus ATCC
          27759]
          Length = 90

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+++  LS+KD+   +    + + D   +GE I++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAIAEKTKLSKKDAEAALKAFTDVVADELKKGEKIQLVGFGTFEVSERPAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I   +   FKA   LK  I
Sbjct: 61 RNPRTGETMTIAASKAPKFKAGKALKDSI 89


>gi|308273400|emb|CBX30002.1| Integration host factor subunit alpha [uncultured
          Desulfobacterium sp.]
          Length = 94

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+V  +  E G ++K S   + +L   I ++   G+ + IS F  F VK+K  R 
Sbjct: 2  ALTKNDIVARVH-ELGFTKKKSVDIIESLLMIIKNNLENGDDVLISGFGKFCVKKKSQRR 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN  T  ++ +  RRVV FK S  L+ +I
Sbjct: 61 GRNPATGSDLILRQRRVVTFKCSGKLRDKI 90


>gi|302344119|ref|YP_003808648.1| histone family protein DNA-binding protein [Desulfarculus baarsii
          DSM 2075]
 gi|301640732|gb|ADK86054.1| histone family protein DNA-binding protein [Desulfarculus baarsii
          DSM 2075]
          Length = 92

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+++++K   L+ K +   V TLF  I ++ V+G+ ++I  F +F VK      G
Sbjct: 1  MNKSQLIEALAKAENLTIKKAEMVVNTLFGAIEEALVQGDRVEIRGFGSFKVKNYDGYQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + +++  +++  FK    LK R+
Sbjct: 61 RNPKTGEIIQVGQKKLPFFKVGKELKDRV 89


>gi|283796888|ref|ZP_06346041.1| DNA-binding protein HU [Clostridium sp. M62/1]
 gi|291075298|gb|EFE12662.1| DNA-binding protein HU [Clostridium sp. M62/1]
 gi|295089874|emb|CBK75981.1| Bacterial nucleoid DNA-binding protein [Clostridium cf.
          saccharolyticum K10]
          Length = 91

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  LS+KD+ + +    + + +  V+G  I++  F TF V ++ +R G
Sbjct: 1  MNKTELIAAVAEKAELSKKDAEKAIKAFTDTVSEELVKGGKIQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + + I   +   FKA   LK
Sbjct: 61 RNPKTGETMPIAASKTPKFKAGKALK 86


>gi|167763758|ref|ZP_02435885.1| hypothetical protein BACSTE_02138 [Bacteroides stercoris ATCC
          43183]
 gi|167697874|gb|EDS14453.1| hypothetical protein BACSTE_02138 [Bacteroides stercoris ATCC
          43183]
          Length = 88

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 47/85 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++ E GLS+ DS R +      +  +   G+ + +  F TF V ++  R+G
Sbjct: 1  MNKSELISAMAAEGGLSKADSKRALDAFIASVTKALKAGDKVALVGFGTFSVMERAGRIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N  T + ++I+ ++V  FK  S L
Sbjct: 61 INPATKKPIQIEAKKVAKFKPGSEL 85


>gi|150005790|ref|YP_001300534.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482]
 gi|254882028|ref|ZP_05254738.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA]
 gi|294776169|ref|ZP_06741658.1| DNA-binding protein HU [Bacteroides vulgatus PC510]
 gi|319640964|ref|ZP_07995672.1| DNA-binding protein HU [Bacteroides sp. 3_1_40A]
 gi|149934214|gb|ABR40912.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482]
 gi|254834821|gb|EET15130.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA]
 gi|294449992|gb|EFG18503.1| DNA-binding protein HU [Bacteroides vulgatus PC510]
 gi|317387409|gb|EFV68280.1| DNA-binding protein HU [Bacteroides sp. 3_1_40A]
          Length = 90

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          + +  +S++ G + KD+++ V+++   +      G  I I  F TF VK+K  R+  N  
Sbjct: 5  EFISELSRKLGYTNKDTSQLVSSVIGVMTQELQDGNNIAIQGFGTFEVKKKLERISINPA 64

Query: 69 TNQEVKIDPRRVVVFKASSILKKR 92
          T Q + I P+ V+ +K S  LK++
Sbjct: 65 TQQRMLIPPKLVLTYKPSVTLKEK 88


>gi|253987885|ref|YP_003039241.1| DNA binding protein hu-alpha [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253779335|emb|CAQ82496.1| dna-binding protein hu-alpha (ns2) (hu-2) [Photorhabdus
          asymbiotica]
          Length = 90

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++   L++  +   + +  N I +S   G+++++  F TF V  +  R G
Sbjct: 1  MNKTELVDAIAESTDLTKAQAKAALESTLNAITESLKAGDSVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I    V  F A   LK  +
Sbjct: 61 RNPQTGKEITIAAANVPAFSAGKALKDAV 89


>gi|251771308|gb|EES51889.1| putative integration host factor, alpha subunit HimA like protein
          [Leptospirillum ferrodiazotrophum]
          Length = 104

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 5  ITRSDLVKSISKE---FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + R+D+V+         GL RK     +  +  EI +S + GE++K++ F TF V+++  
Sbjct: 1  MNRTDIVEYTRNNGGGIGLPRKAVREALDFVIEEITNSVLAGESVKLTGFGTFEVRKRED 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKAS 86
          R+GRN +T + + I   +VVVF+ +
Sbjct: 61 RLGRNPKTGEPLLIKSHKVVVFRPT 85


>gi|71737446|ref|YP_277186.1| HU family DNA-binding protein [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|257485720|ref|ZP_05639761.1| HU family DNA-binding protein [Pseudomonas syringae pv. tabaci
          ATCC 11528]
 gi|298489413|ref|ZP_07007424.1| DNA-binding protein HU-alpha [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|71557999|gb|AAZ37210.1| DNA-binding protein HU family [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|298155987|gb|EFH97096.1| DNA-binding protein HU-alpha [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|320321727|gb|EFW77825.1| HU family DNA-binding protein [Pseudomonas syringae pv. glycinea
          str. B076]
 gi|320331477|gb|EFW87417.1| HU family DNA-binding protein [Pseudomonas syringae pv. glycinea
          str. race 4]
 gi|330880920|gb|EGH15069.1| HU family DNA-binding protein [Pseudomonas syringae pv. glycinea
          str. race 4]
 gi|330890628|gb|EGH23289.1| HU family DNA-binding protein [Pseudomonas syringae pv. mori str.
          301020]
 gi|330986904|gb|EGH85007.1| HU family DNA-binding protein [Pseudomonas syringae pv.
          lachrymans str. M301315]
 gi|331012004|gb|EGH92060.1| HU family DNA-binding protein [Pseudomonas syringae pv. tabaci
          ATCC 11528]
          Length = 91

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + ++  +I+++  L+++ S R +  +  EI  +  R +++ +  F TF  + +G+R G+N
Sbjct: 3  KPEVAAAIAEKADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT + VKI     V FK    LK
Sbjct: 63 PQTGEPVKIKASNTVAFKPGKALK 86


>gi|226946851|ref|YP_002801924.1| histone-like DNA-binding protein [Azotobacter vinelandii DJ]
 gi|226721778|gb|ACO80949.1| histone-like bacterial DNA-binding protein [Azotobacter
          vinelandii DJ]
          Length = 90

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L  +I+++  L+R  + R +  +  EI  +  R +++ +  F TF  + +G+R G+N
Sbjct: 3  KPELAAAIAEKTDLTRDQANRVLNAMLEEITSALNRKDSVTLVGFGTFVQRHRGARTGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT Q VKI     V FK    L+
Sbjct: 63 PQTGQPVKIRASNTVAFKPGKSLR 86


>gi|152983749|ref|YP_001351441.1| putative DNA-binding protein [Pseudomonas aeruginosa PA7]
 gi|150958907|gb|ABR80932.1| probable DNA-binding protein [Pseudomonas aeruginosa PA7]
          Length = 90

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L  +I+++  L+++ + R +  L +EI  +  R +++ +  F TF  + +G+  G+N
Sbjct: 3  KPELAAAIAEKADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGASTGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT Q VKI     V FK    L+
Sbjct: 63 PQTGQPVKIKASNTVAFKPGKALR 86


>gi|325954785|ref|YP_004238445.1| histone family protein DNA-binding protein [Weeksella virosa DSM
          16922]
 gi|323437403|gb|ADX67867.1| histone family protein DNA-binding protein [Weeksella virosa DSM
          16922]
          Length = 97

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 44/82 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V +IS + GL + D+ R +    +E+  S   GE + +  F +F +K++  + G
Sbjct: 1  MTKADIVNNISSKLGLEKGDTQRVIEAFMDEVIKSLENGENVYLRGFGSFTIKKRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+     + I    V  FK +
Sbjct: 61 RNITKGTSIIIPAHNVPGFKPA 82


>gi|163753443|ref|ZP_02160567.1| DNA-binding protein HU [Kordia algicida OT-1]
 gi|161327175|gb|EDP98500.1| DNA-binding protein HU [Kordia algicida OT-1]
          Length = 96

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 45/85 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  IS++ G+ + D    V T   E+ +S   G+ + +  F +F +K +  + G
Sbjct: 1  MTKADIVAKISEKLGMEKGDVQATVETFMEEVKNSLESGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  +KI    +  FK + + 
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVF 85


>gi|163783706|ref|ZP_02178693.1| integration host factor beta subunit [Hydrogenivirga sp.
          128-5-R1-1]
 gi|159881031|gb|EDP74548.1| integration host factor beta subunit [Hydrogenivirga sp.
          128-5-R1-1]
          Length = 94

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SD+ K I+K  G+S++ +   V  +F  + ++  RGE ++I    TF +K+K SR  
Sbjct: 1  MKKSDITKEIAKRRGISQRKARIIVDQIFQAMAEALTRGEKVEIRGLGTFKIKKKPSRFV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          ++ +T  E+ +  R V  FK   ++K
Sbjct: 61 KDPRTGVEIFVKERYVPTFKMGKLIK 86


>gi|221067986|ref|ZP_03544091.1| histone family protein DNA-binding protein [Comamonas
          testosteroni KF-1]
 gi|221068049|ref|ZP_03544154.1| histone family protein DNA-binding protein [Comamonas
          testosteroni KF-1]
 gi|220713009|gb|EED68377.1| histone family protein DNA-binding protein [Comamonas
          testosteroni KF-1]
 gi|220713072|gb|EED68440.1| histone family protein DNA-binding protein [Comamonas
          testosteroni KF-1]
          Length = 90

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL++ ISK   +S++ + R ++   + I  +  +G+ ++I  F TF V ++  R G
Sbjct: 1  MNKSDLIEHISKSAEVSKQAADRALSATLDGIRQALKKGKVVQIIGFGTFSVGRRAGRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T ++V I   RV  FK    LK
Sbjct: 61 RNPRTGEKVTIAATRVAKFKPGKHLK 86


>gi|218886655|ref|YP_002435976.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris str. 'Miyazaki F']
 gi|218757609|gb|ACL08508.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris str. 'Miyazaki F']
          Length = 97

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 53/95 (55%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           KT+T++++V +I ++   +R +    V +L   +  +  +  A+ IS F  F    K +
Sbjct: 3  GKTLTKAEIVDAIYEKTDRNRAEVKGVVESLLGIMKQAIKKDHALLISGFGKFEAYDKKA 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          R GRN QT++ + + PR+VVVF+ S   +  + D+
Sbjct: 63 RKGRNPQTDETITLPPRKVVVFRLSRKFRAELNDE 97


>gi|320104532|ref|YP_004180123.1| histone family protein DNA-binding protein [Isosphaera pallida ATCC
           43644]
 gi|319751814|gb|ADV63574.1| histone family protein DNA-binding protein [Isosphaera pallida ATCC
           43644]
          Length = 126

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 6/103 (5%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+ D+VK IS E GL++  + + V    + I  + V+   I++ +F  F VK++ +R  
Sbjct: 1   MTKKDIVKRISDEVGLTQLKTKQIVQLTLDAIIQTLVQEGQIELRNFGVFKVKRRAARKA 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           RN +T  +V +  + VV FK       + M+D+  R  N DD+
Sbjct: 61  RNPRTGAKVTVPAKTVVTFKPG-----KEMEDL-VRSMNPDDL 97


>gi|62464771|ref|YP_220382.1| hypothetical protein p49879_1p05 [Leptospirillum ferrooxidans]
 gi|60739072|gb|AAX36038.1| ORF98 [Leptospirillum ferrooxidans]
          Length = 98

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV+S+S    LS+KD    +      I DS  +GE + +  F TF   +K +R G
Sbjct: 1  MNKTELVESVSDSSHLSKKDVQAVLDGFLATIGDSLKKGEKVALVGFGTFETVKKEARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + ++I  R V  F A   L++ I
Sbjct: 61 RNPRTGEALEIPARTVPKFSAGKSLREAI 89


>gi|325578218|ref|ZP_08148353.1| integration host factor beta subunit [Haemophilus parainfluenzae
          ATCC 33392]
 gi|301156124|emb|CBW15595.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Haemophilus parainfluenzae T3T1]
 gi|325159954|gb|EGC72083.1| integration host factor beta subunit [Haemophilus parainfluenzae
          ATCC 33392]
          Length = 94

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++++S K   LS K+    V  +   I  S   G  I++  F +F +  +  RV
Sbjct: 1  MTKSELIENLSTKHPTLSAKEVEGIVKDILELIAQSLEEGNRIEVRGFGSFSLHHRQPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   VK+D + V  FKA   LK R+
Sbjct: 61 GRNPKTGDSVKLDAKSVPHFKAGKELKDRV 90


>gi|300715594|ref|YP_003740397.1| DNA-binding protein HU-beta [Erwinia billingiae Eb661]
 gi|299061430|emb|CAX58542.1| DNA-binding protein HU-beta [Erwinia billingiae Eb661]
          Length = 90

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +      + DS   G+ + +  F TF V+++  R G
Sbjct: 1  MNKSQLIDKIAASADISKAAAGRVLDAFMGSVSDSLKEGDEVALVGFGTFSVRERSERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F+A   LK  +
Sbjct: 61 RNPQTGKEITIPAGKVPGFRAGKALKDAV 89


>gi|228961970|ref|ZP_04123500.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228797708|gb|EEM44791.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani
          str. T13001]
          Length = 91

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++ + GL +  ++  V TL   I  +   G+ +++  F TF V+++ +R G
Sbjct: 1  MNKTELITQVAVKTGLKKSQASLAVDTLLESIQQALQNGDNVQLLGFGTFEVRERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T + + I  ++   FKA  +LK+ +
Sbjct: 61 RNPSTGESLVIPAKKAPAFKAGKVLKEAV 89


>gi|70733385|ref|YP_263160.1| integration host factor subunit beta [Pseudomonas fluorescens
          Pf-5]
 gi|68347684|gb|AAY95290.1| integration host factor, beta subunit, putative [Pseudomonas
          fluorescens Pf-5]
          Length = 91

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L  +I+++  L+++ + R +  +  EI  +  R +++ +  F TF  + +G+R G+N
Sbjct: 3  KPELAAAIAEKADLTKEQANRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT + VKI     V FK    LK
Sbjct: 63 PQTGEPVKIKASNTVAFKPGKSLK 86


>gi|289677399|ref|ZP_06498289.1| histone-like DNA-binding protein [Pseudomonas syringae pv.
          syringae FF5]
 gi|302187085|ref|ZP_07263758.1| histone-like DNA-binding protein [Pseudomonas syringae pv.
          syringae 642]
 gi|330898762|gb|EGH30181.1| histone-like DNA-binding protein [Pseudomonas syringae pv.
          japonica str. M301072PT]
 gi|330937458|gb|EGH41423.1| histone-like DNA-binding protein [Pseudomonas syringae pv. pisi
          str. 1704B]
 gi|330952450|gb|EGH52710.1| histone-like DNA-binding protein [Pseudomonas syringae Cit 7]
 gi|330976274|gb|EGH76336.1| histone-like DNA-binding protein [Pseudomonas syringae pv. aptata
          str. DSM 50252]
          Length = 91

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + ++  +I+++  L+++ S R +  +  EI  +  R +++ +  F TF  + +G+R G+N
Sbjct: 3  KPEVAAAIAEKADLTKEQSNRVLNAILEEITGALNRKDSVTLVGFGTFLQRHRGARTGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT + VKI     V FK    LK
Sbjct: 63 PQTGEPVKIKASNTVAFKPGKALK 86


>gi|113869620|ref|YP_728109.1| HU family DNA-binding protein [Ralstonia eutropha H16]
 gi|113528396|emb|CAJ94741.1| DNA-binding protein HU family [Ralstonia eutropha H16]
          Length = 92

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++L+ +I+    GL++  + + +    + I D+  +GE + +  F TF   ++G R+
Sbjct: 1  MTKTELIDAIAAGVDGLTKSKAEQALNVTLSAIMDAVAKGETLSLIGFGTFSKGERGERM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T +E+K++  + V FKA    K  +
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAV 90


>gi|114330422|ref|YP_746644.1| integration host factor, beta subunit [Nitrosomonas eutropha C91]
 gi|122314557|sp|Q0AIZ2|IHFB_NITEC RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|114307436|gb|ABI58679.1| integration host factor, beta subunit [Nitrosomonas eutropha C91]
          Length = 105

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  +++ F  L  KD+   V  + + +  S  RGE I+I  F +F +  + SRV
Sbjct: 1  MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLARGERIEIRGFGSFDLNYRPSRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V +  + V  FKA   +++ I
Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKKMRELI 90


>gi|167586533|ref|ZP_02378921.1| integration host factor, beta subunit [Burkholderia ubonensis Bu]
          Length = 107

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV  ++  F  L  KD+   V T+ + + D+  +G  I+I  F +F + ++ +RV
Sbjct: 1  MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V++  + V  FK    L++R+
Sbjct: 61 GRNPKSGEKVQVPEKFVPHFKPGKELRERV 90


>gi|152968975|ref|YP_001334084.1| transcriptional regulator HU subunit beta [Klebsiella pneumoniae
          subsp. pneumoniae MGH 78578]
 gi|206578345|ref|YP_002240080.1| DNA-binding protein HU, beta subunit [Klebsiella pneumoniae 342]
 gi|238893389|ref|YP_002918123.1| transcriptional regulator HU subunit beta [Klebsiella pneumoniae
          NTUH-K2044]
 gi|261341041|ref|ZP_05968899.1| DNA-binding protein HU-beta [Enterobacter cancerogenus ATCC
          35316]
 gi|262042476|ref|ZP_06015635.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|288936831|ref|YP_003440890.1| histone family protein DNA-binding protein [Klebsiella variicola
          At-22]
 gi|290510113|ref|ZP_06549483.1| transcriptional regulator HU subunit alpha [Klebsiella sp.
          1_1_55]
 gi|296101562|ref|YP_003611708.1| DNA-binding protein HU-beta [Enterobacter cloacae subsp. cloacae
          ATCC 13047]
 gi|311280663|ref|YP_003942894.1| histone family protein DNA-binding protein [Enterobacter cloacae
          SCF1]
 gi|330011536|ref|ZP_08307122.1| DNA-binding protein HU-beta [Klebsiella sp. MS 92-3]
 gi|150953824|gb|ABR75854.1| DNA-binding protein HU-beta, NS1 (HU-1) [Klebsiella pneumoniae
          subsp. pneumoniae MGH 78578]
 gi|206567403|gb|ACI09179.1| DNA-binding protein HU, beta subunit [Klebsiella pneumoniae 342]
 gi|238545705|dbj|BAH62056.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp.
          pneumoniae NTUH-K2044]
 gi|259040180|gb|EEW41292.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|288316906|gb|EFC55844.1| DNA-binding protein HU-beta [Enterobacter cancerogenus ATCC
          35316]
 gi|288891540|gb|ADC59858.1| histone family protein DNA-binding protein [Klebsiella variicola
          At-22]
 gi|289776829|gb|EFD84827.1| transcriptional regulator HU subunit alpha [Klebsiella sp.
          1_1_55]
 gi|295056021|gb|ADF60759.1| DNA-binding protein HU-beta [Enterobacter cloacae subsp. cloacae
          ATCC 13047]
 gi|308749858|gb|ADO49610.1| histone family protein DNA-binding protein [Enterobacter cloacae
          SCF1]
 gi|328534153|gb|EGF60788.1| DNA-binding protein HU-beta [Klebsiella sp. MS 92-3]
          Length = 90

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  L   + +S   G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDALIASVTESLQAGDDVALVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F+A   LK  +
Sbjct: 61 RNPQTGKEITIAAAKVPGFRAGKALKDAV 89


>gi|27363508|ref|NP_759036.1| DNA-binding protein HU-beta [Vibrio vulnificus CMCP6]
 gi|37679291|ref|NP_933900.1| nucleoid DNA-binding protein [Vibrio vulnificus YJ016]
 gi|27359624|gb|AAO08563.1| DNA-binding protein HU-beta [Vibrio vulnificus CMCP6]
 gi|37198034|dbj|BAC93871.1| bacterial nucleoid DNA-binding protein [Vibrio vulnificus YJ016]
          Length = 97

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 47/87 (54%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+ ++ LV+SI+    +S+  + R +      +  +   G+ + +  F TF V+ + +R 
Sbjct: 7  TVNKTQLVESIAANADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAART 66

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T +E++I   +V  FKA   LK
Sbjct: 67 GRNPKTGEEIQIAEAKVPSFKAGKALK 93


>gi|159903915|ref|YP_001551259.1| histone-like DNA-binding protein [Prochlorococcus marinus str.
          MIT 9211]
 gi|159889091|gb|ABX09305.1| Bacterial histone-like DNA-binding protein [Prochlorococcus
          marinus str. MIT 9211]
          Length = 92

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ D    +    + I DS V G+ + I  F +F  + + +R G
Sbjct: 1  MNKADLVNLVAARTELTKTDVALVIDAAIDTIIDSVVEGKKVSILGFGSFEPRDRSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T +++KI  +RV  F A  + K R+
Sbjct: 61 LNPKTGEKIKIPAKRVPAFTAGKLFKDRV 89


>gi|225012358|ref|ZP_03702794.1| histone family protein DNA-binding protein [Flavobacteria
          bacterium MS024-2A]
 gi|225003335|gb|EEG41309.1| histone family protein DNA-binding protein [Flavobacteria
          bacterium MS024-2A]
          Length = 97

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V +IS + G+ R D    V     E+  S  +GE + +  F +F +K +  + G
Sbjct: 1  MTKADIVSNISDQLGIDRADVQATVEKFMKEVKGSLEKGENVYLRGFGSFIIKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN+  N  +KI    +  FK + I  K +
Sbjct: 61 RNISKNIALKIPAHNIPSFKPAKIFVKGV 89


>gi|161525426|ref|YP_001580438.1| integration host factor subunit beta [Burkholderia multivorans
          ATCC 17616]
 gi|189349837|ref|YP_001945465.1| integration host factor subunit beta [Burkholderia multivorans
          ATCC 17616]
 gi|221201262|ref|ZP_03574302.1| integration host factor, beta subunit [Burkholderia multivorans
          CGD2M]
 gi|221206284|ref|ZP_03579297.1| integration host factor, beta subunit [Burkholderia multivorans
          CGD2]
 gi|221213565|ref|ZP_03586539.1| integration host factor, beta subunit [Burkholderia multivorans
          CGD1]
 gi|226709776|sp|A9ADV3|IHFB_BURM1 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|160342855|gb|ABX15941.1| integration host factor, beta subunit [Burkholderia multivorans
          ATCC 17616]
 gi|189333859|dbj|BAG42929.1| integration host factor beta subunit [Burkholderia multivorans
          ATCC 17616]
 gi|221166354|gb|EED98826.1| integration host factor, beta subunit [Burkholderia multivorans
          CGD1]
 gi|221173593|gb|EEE06027.1| integration host factor, beta subunit [Burkholderia multivorans
          CGD2]
 gi|221179112|gb|EEE11519.1| integration host factor, beta subunit [Burkholderia multivorans
          CGD2M]
          Length = 107

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV  ++  F  L  KD+   V T+ + + D+  +G  I+I  F +F + ++ +RV
Sbjct: 1  MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V++  + V  FK    L++R+
Sbjct: 61 GRNPKSGEKVQVPEKFVPHFKPGKELRERV 90


>gi|15603597|ref|NP_246671.1| hypothetical protein PM1732 [Pasteurella multocida subsp.
          multocida str. Pm70]
 gi|14194596|sp|Q9CK94|DBH_PASMU RecName: Full=DNA-binding protein HU
 gi|12722146|gb|AAK03816.1| HupA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 90

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+    L++K +   +      I  S   GE +++  F TF V  + +R G
Sbjct: 1  MNKTDLIDAIASAAELNKKQAKAALEATLEAISGSLKAGEPVQLIGFGTFKVNSRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT  E+KI   +V  F A   LK
Sbjct: 61 RNPQTGAEIKIAASKVPAFVAGKALK 86


>gi|229496747|ref|ZP_04390458.1| DNA-binding protein, HU family [Porphyromonas endodontalis ATCC
          35406]
 gi|229316293|gb|EEN82215.1| DNA-binding protein, HU family [Porphyromonas endodontalis ATCC
          35406]
          Length = 88

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 51/85 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ + +++++ GL++ D+ R V      + ++  +G+ + +  F TF V Q+ +R G
Sbjct: 1  MNKTEFIAAVAEKAGLTKADAQRAVNAFTEVVKETMEKGDRLPLVGFGTFSVSQRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          +N +T + +KI  R+VV FK  + L
Sbjct: 61 KNPRTGETIKIAARKVVHFKPGANL 85


>gi|50843144|ref|YP_056371.1| DNA-binding protein HU [Propionibacterium acnes KPA171202]
 gi|282855020|ref|ZP_06264352.1| DNA-binding protein HU [Propionibacterium acnes J139]
 gi|289425014|ref|ZP_06426793.1| DNA-binding protein HU [Propionibacterium acnes SK187]
 gi|289427803|ref|ZP_06429512.1| DNA-binding protein HU [Propionibacterium acnes J165]
 gi|295131204|ref|YP_003581867.1| DNA-binding protein HU [Propionibacterium acnes SK137]
 gi|50840746|gb|AAT83413.1| DNA-binding protein HU [Propionibacterium acnes KPA171202]
 gi|282581608|gb|EFB86993.1| DNA-binding protein HU [Propionibacterium acnes J139]
 gi|289154713|gb|EFD03399.1| DNA-binding protein HU [Propionibacterium acnes SK187]
 gi|289158985|gb|EFD07180.1| DNA-binding protein HU [Propionibacterium acnes J165]
 gi|291377085|gb|ADE00940.1| DNA-binding protein HU [Propionibacterium acnes SK137]
 gi|313763392|gb|EFS34756.1| DNA-binding protein HU [Propionibacterium acnes HL013PA1]
 gi|313773269|gb|EFS39235.1| DNA-binding protein HU [Propionibacterium acnes HL074PA1]
 gi|313793448|gb|EFS41499.1| DNA-binding protein HU [Propionibacterium acnes HL110PA1]
 gi|313801153|gb|EFS42416.1| DNA-binding protein HU [Propionibacterium acnes HL110PA2]
 gi|313808502|gb|EFS46967.1| DNA-binding protein HU [Propionibacterium acnes HL087PA2]
 gi|313812075|gb|EFS49789.1| DNA-binding protein HU [Propionibacterium acnes HL083PA1]
 gi|313812345|gb|EFS50059.1| DNA-binding protein HU [Propionibacterium acnes HL025PA1]
 gi|313814684|gb|EFS52398.1| DNA-binding protein HU [Propionibacterium acnes HL059PA1]
 gi|313819237|gb|EFS56951.1| DNA-binding protein HU [Propionibacterium acnes HL046PA2]
 gi|313821091|gb|EFS58805.1| DNA-binding protein HU [Propionibacterium acnes HL036PA1]
 gi|313823483|gb|EFS61197.1| DNA-binding protein HU [Propionibacterium acnes HL036PA2]
 gi|313827014|gb|EFS64728.1| DNA-binding protein HU [Propionibacterium acnes HL063PA1]
 gi|313834714|gb|EFS72428.1| DNA-binding protein HU [Propionibacterium acnes HL056PA1]
 gi|313837917|gb|EFS75631.1| DNA-binding protein HU [Propionibacterium acnes HL086PA1]
 gi|314917598|gb|EFS81429.1| DNA-binding protein HU [Propionibacterium acnes HL050PA1]
 gi|314919646|gb|EFS83477.1| DNA-binding protein HU [Propionibacterium acnes HL050PA3]
 gi|314924276|gb|EFS88107.1| DNA-binding protein HU [Propionibacterium acnes HL001PA1]
 gi|314925924|gb|EFS89755.1| DNA-binding protein HU [Propionibacterium acnes HL036PA3]
 gi|314930281|gb|EFS94112.1| DNA-binding protein HU [Propionibacterium acnes HL067PA1]
 gi|314956860|gb|EFT01014.1| DNA-binding protein HU [Propionibacterium acnes HL027PA1]
 gi|314957637|gb|EFT01740.1| DNA-binding protein HU [Propionibacterium acnes HL002PA1]
 gi|314960899|gb|EFT05000.1| DNA-binding protein HU [Propionibacterium acnes HL002PA2]
 gi|314963337|gb|EFT07437.1| DNA-binding protein HU [Propionibacterium acnes HL082PA1]
 gi|314967386|gb|EFT11485.1| DNA-binding protein HU [Propionibacterium acnes HL082PA2]
 gi|314968980|gb|EFT13078.1| DNA-binding protein HU [Propionibacterium acnes HL037PA1]
 gi|314974014|gb|EFT18110.1| DNA-binding protein HU [Propionibacterium acnes HL053PA1]
 gi|314975440|gb|EFT19535.1| DNA-binding protein HU [Propionibacterium acnes HL045PA1]
 gi|314979461|gb|EFT23555.1| DNA-binding protein HU [Propionibacterium acnes HL072PA2]
 gi|314982105|gb|EFT26198.1| DNA-binding protein HU [Propionibacterium acnes HL110PA3]
 gi|314984200|gb|EFT28292.1| DNA-binding protein HU [Propionibacterium acnes HL005PA1]
 gi|314988445|gb|EFT32536.1| DNA-binding protein HU [Propionibacterium acnes HL005PA2]
 gi|314988636|gb|EFT32727.1| DNA-binding protein HU [Propionibacterium acnes HL005PA3]
 gi|315079383|gb|EFT51381.1| DNA-binding protein HU [Propionibacterium acnes HL053PA2]
 gi|315080039|gb|EFT52015.1| DNA-binding protein HU [Propionibacterium acnes HL078PA1]
 gi|315083409|gb|EFT55385.1| DNA-binding protein HU [Propionibacterium acnes HL027PA2]
 gi|315086796|gb|EFT58772.1| DNA-binding protein HU [Propionibacterium acnes HL002PA3]
 gi|315089443|gb|EFT61419.1| DNA-binding protein HU [Propionibacterium acnes HL072PA1]
 gi|315090344|gb|EFT62320.1| DNA-binding protein HU [Propionibacterium acnes HL110PA4]
 gi|315093627|gb|EFT65603.1| DNA-binding protein HU [Propionibacterium acnes HL060PA1]
 gi|315097786|gb|EFT69762.1| DNA-binding protein HU [Propionibacterium acnes HL038PA1]
 gi|315098017|gb|EFT69993.1| DNA-binding protein HU [Propionibacterium acnes HL059PA2]
 gi|315102637|gb|EFT74613.1| DNA-binding protein HU [Propionibacterium acnes HL046PA1]
 gi|315104472|gb|EFT76448.1| DNA-binding protein HU [Propionibacterium acnes HL050PA2]
 gi|315106215|gb|EFT78191.1| DNA-binding protein HU [Propionibacterium acnes HL030PA1]
 gi|315110452|gb|EFT82428.1| DNA-binding protein HU [Propionibacterium acnes HL030PA2]
 gi|327325389|gb|EGE67194.1| DNA-binding protein HU [Propionibacterium acnes HL096PA2]
 gi|327325467|gb|EGE67271.1| DNA-binding protein HU [Propionibacterium acnes HL103PA1]
 gi|327328272|gb|EGE70036.1| DNA-binding protein HU [Propionibacterium acnes HL096PA3]
 gi|327332409|gb|EGE74145.1| DNA-binding protein HU [Propionibacterium acnes HL097PA1]
 gi|327443682|gb|EGE90336.1| DNA-binding protein HU [Propionibacterium acnes HL043PA1]
 gi|327449219|gb|EGE95873.1| DNA-binding protein HU [Propionibacterium acnes HL043PA2]
 gi|327450187|gb|EGE96841.1| DNA-binding protein HU [Propionibacterium acnes HL013PA2]
 gi|327451216|gb|EGE97870.1| DNA-binding protein HU [Propionibacterium acnes HL087PA3]
 gi|327451251|gb|EGE97905.1| DNA-binding protein HU [Propionibacterium acnes HL092PA1]
 gi|327452573|gb|EGE99227.1| DNA-binding protein HU [Propionibacterium acnes HL083PA2]
 gi|328751969|gb|EGF65585.1| DNA-binding protein HU [Propionibacterium acnes HL025PA2]
 gi|328754787|gb|EGF68403.1| DNA-binding protein HU [Propionibacterium acnes HL087PA1]
 gi|328756757|gb|EGF70373.1| DNA-binding protein HU [Propionibacterium acnes HL020PA1]
 gi|328761031|gb|EGF74583.1| DNA-binding protein HU [Propionibacterium acnes HL099PA1]
 gi|332676081|gb|AEE72897.1| DNA-binding protein HU [Propionibacterium acnes 266]
          Length = 91

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+K+++K+  L+   +   V  L + I  +  +GE +++    T    ++ +R G
Sbjct: 1  MTKSELIKTVAKQASLTEAQTNEAVKALTDVITAALAKGEKVQLPGLFTAETVERPARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + + I   + V   ASS LKK + D
Sbjct: 61 RNPRTGESMTIPAHKAVKISASSTLKKAVAD 91


>gi|89073233|ref|ZP_01159763.1| putative bacterial nucleoid DNA-binding protein [Photobacterium
          sp. SKA34]
 gi|90579275|ref|ZP_01235085.1| putative bacterial nucleoid DNA-binding protein [Vibrio angustum
          S14]
 gi|89050943|gb|EAR56407.1| putative bacterial nucleoid DNA-binding protein [Photobacterium
          sp. SKA34]
 gi|90440108|gb|EAS65289.1| putative bacterial nucleoid DNA-binding protein [Vibrio angustum
          S14]
          Length = 90

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV  I++   +S+  + R +      + D+   GE + +  F TF V+++ +R G
Sbjct: 1  MNKTQLVDKIAESADISKASAGRALDAFIEAVSDTLKDGEQVALVGFGTFSVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I   +V  FK    LK  +
Sbjct: 61 RNPQTGAEIQIAAAKVPGFKPGKALKDSV 89


>gi|289628106|ref|ZP_06461060.1| HU family DNA-binding protein [Pseudomonas syringae pv. aesculi
          str. NCPPB3681]
 gi|289651294|ref|ZP_06482637.1| HU family DNA-binding protein [Pseudomonas syringae pv. aesculi
          str. 2250]
 gi|330870971|gb|EGH05680.1| HU family DNA-binding protein [Pseudomonas syringae pv. aesculi
          str. 0893_23]
          Length = 92

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + ++  +I+++  L+++ S R +  +  EI  +  R +++ +  F TF  + +G+R G+N
Sbjct: 3  KPEVAAAIAEKADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT + VKI     V FK    LK
Sbjct: 63 PQTGEPVKIKASNTVAFKPGKALK 86


>gi|38637989|ref|NP_942963.1| putative histone-like protein [Ralstonia eutropha H16]
 gi|32527327|gb|AAP86077.1| putative histone-like protein [Ralstonia eutropha H16]
          Length = 114

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 3   KTITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + +T+++L+++I+    GL++  +   +    + I D+  +G+A+ +  F TF   ++  
Sbjct: 20  RIMTKAELIEAIAAGVDGLTKAKAEEALNVTLHAIMDAVAKGDALSLVGFGTFSKGERAE 79

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKAS 86
           R+ RN +T +E+K++  R V FKA 
Sbjct: 80  RMARNPRTGEEIKVEAARTVKFKAG 104


>gi|237653695|ref|YP_002890009.1| integration host factor subunit beta [Thauera sp. MZ1T]
 gi|237624942|gb|ACR01632.1| integration host factor, beta subunit [Thauera sp. MZ1T]
          Length = 95

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  +++ F  L  KD+   V  + + + D+  RG+ I+I  F +F +  +  R 
Sbjct: 1  MTKSELIAQLAERFPQLVAKDADYAVKMILDAMTDALARGDRIEIRGFGSFALNYRPPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V +  + V  FKA   L++R+
Sbjct: 61 GRNPKSGEKVLVPEKYVPHFKAGKELRERV 90


>gi|90419402|ref|ZP_01227312.1| DNA-binding protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90336339|gb|EAS50080.1| DNA-binding protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 92

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++S++  LS++D++  V  +F  +  +  +G+ I++  F TF V  + +  G
Sbjct: 1  MNKNELIAAVSEKAELSKQDASSAVDAVFETLQATMAKGDDIRLVGFGTFSVSHRAASKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T  EV I  R V  F A   LK  +
Sbjct: 61 RNPSTGAEVDIPARNVPKFAAGKGLKDAV 89


>gi|317492906|ref|ZP_07951330.1| DNA-binding protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919028|gb|EFV40363.1| DNA-binding protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 90

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S LV  I++   +S+  + R +  +   + +S   G+++ +  F TF V+++ +R G
Sbjct: 1  MNKSQLVDKIAEGADISKAAAGRALDAIIASVTESLQSGDSVALVGFGTFDVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F+A   LK  +
Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKALKDAV 89


>gi|302878720|ref|YP_003847284.1| histone family protein DNA-binding protein [Gallionella
          capsiferriformans ES-2]
 gi|302581509|gb|ADL55520.1| histone family protein DNA-binding protein [Gallionella
          capsiferriformans ES-2]
          Length = 93

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +L+ +++ + G ++ D+ R      + + ++   G+ I +  F +F V+++ +R G
Sbjct: 1  MNRKELIDALATKTGSTKADAARNFAAFIDVVTETLTAGDDISLVGFGSFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T  E+KI   +   FK  + LK  + D
Sbjct: 61 RNPATGAELKIAASKSPAFKPGATLKSAVND 91


>gi|255065928|ref|ZP_05317783.1| DNA-binding protein HU-beta [Neisseria sicca ATCC 29256]
 gi|261364607|ref|ZP_05977490.1| DNA-binding protein HU-beta [Neisseria mucosa ATCC 25996]
 gi|261378756|ref|ZP_05983329.1| DNA-binding protein HU-beta [Neisseria cinerea ATCC 14685]
 gi|255049839|gb|EET45303.1| DNA-binding protein HU-beta [Neisseria sicca ATCC 29256]
 gi|269144911|gb|EEZ71329.1| DNA-binding protein HU-beta [Neisseria cinerea ATCC 14685]
 gi|288567196|gb|EFC88756.1| DNA-binding protein HU-beta [Neisseria mucosa ATCC 25996]
          Length = 89

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I++E G+S+  + + +    N + ++  +G+ + +  F TF+V ++  R G
Sbjct: 1  MNKSELIEAIAQEAGISKAAAQKALDATTNAVTNALKKGDTVTLVGFGTFYVGERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + + I   +   F+A   LK
Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKALK 86


>gi|57339942|gb|AAW49958.1| hypothetical protein FTT0627 [synthetic construct]
          Length = 125

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 51/89 (57%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +S+LV +I+KE  ++++ ++  +      +  +   G+++ +  F TF VK++  R G
Sbjct: 27  MNKSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSPREG 86

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T + +KI   +V  FKAS  LK  +
Sbjct: 87  RNPKTGETIKIPASKVPSFKASKGLKDAV 115


>gi|313828230|gb|EFS65944.1| DNA-binding protein HU [Propionibacterium acnes HL063PA2]
 gi|314914530|gb|EFS78361.1| DNA-binding protein HU [Propionibacterium acnes HL005PA4]
          Length = 91

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+K+++K+  L+   +   V  L + I  +  +GE +++    T    ++ +R G
Sbjct: 1  MTKSELIKTVAKQASLTEAQTNEAVKALPDVITAALAKGEKVQLPGLFTAETVERPARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + + I   + V   ASS LKK + D
Sbjct: 61 RNPRTGESMTIPAHKAVKISASSTLKKAVAD 91


>gi|326790215|ref|YP_004308036.1| histone family protein DNA-binding protein [Clostridium
          lentocellum DSM 5427]
 gi|326540979|gb|ADZ82838.1| histone family protein DNA-binding protein [Clostridium
          lentocellum DSM 5427]
          Length = 92

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV ++S +  +S+KD+ + +    + + +    G  I++  F TF V ++  RVG
Sbjct: 1  MNKSELVAAMSAKAEISKKDAEKALKAFEDVVMEELQAGGKIQLVGFGTFEVTERKPRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +TN+E+ I   +   FK    LK
Sbjct: 61 RNPKTNEEMPIPGGKAPKFKPGKALK 86


>gi|187734792|ref|YP_001876904.1| histone family protein DNA-binding protein [Akkermansia
          muciniphila ATCC BAA-835]
 gi|187424844|gb|ACD04123.1| histone family protein DNA-binding protein [Akkermansia
          muciniphila ATCC BAA-835]
          Length = 101

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+KT+T+ DLV  IS E   ++ +    V    + I  +   G+ + I +F TF VK+  
Sbjct: 1  MAKTLTKRDLVNKISAETNFTQIEVFDIVQRAVDIISSTLAEGDRVVIRNFGTFQVKEVK 60

Query: 61 SRVGRNLQT-NQEVKIDPRRVVVFKASSILKKRI 93
           +VGRN +  +Q+V I  R VV FK    LK ++
Sbjct: 61 PKVGRNPKNPDQDVPIPARSVVKFKVGKELKDQV 94


>gi|88857365|ref|ZP_01132008.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas
          tunicata D2]
 gi|88820562|gb|EAR30374.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas
          tunicata D2]
          Length = 91

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I+ +  +S+  ++R +      + +S   G ++ +  F TF VK + +R G
Sbjct: 1  MNKAQLVEKIATDAEISKAAASRALDAFTGAVSNSLKEGNSVALVGFGTFSVKARAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I    +  FKA   LK  +
Sbjct: 61 RNPQTGEEIQISAANIPSFKAGKGLKDSV 89


>gi|317152780|ref|YP_004120828.1| histone family protein DNA-binding protein [Desulfovibrio
          aespoeensis Aspo-2]
 gi|316943031|gb|ADU62082.1| histone family protein DNA-binding protein [Desulfovibrio
          aespoeensis Aspo-2]
          Length = 90

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  I+++ G S+  +   +  + + I      G  + ++ F TF V ++ +R G
Sbjct: 1  MTKAELVAKIAEKNGTSKAQAEASMNAILDVIQGELAAGNKLTLTGFGTFSVSERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E+KI   +V  FK   +LK+ +
Sbjct: 61 RNPRTGKEIKIPACKVAQFKPGKVLKEAV 89


>gi|315419707|gb|ADU15823.1| histone-like protein [Streptococcus parasanguinis]
          Length = 91

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 49/85 (57%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + +   +GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90
          N QT +E++I   +V  FKA   LK
Sbjct: 63 NPQTGKEIEIAASKVPAFKAGKALK 87


>gi|213963105|ref|ZP_03391363.1| DNA-binding protein HU [Capnocytophaga sputigena Capno]
 gi|213954189|gb|EEB65513.1| DNA-binding protein HU [Capnocytophaga sputigena Capno]
          Length = 116

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 44/85 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++++V  IS + GL R D    V    +E+ +S   G+ + +  F +F +K +  + G
Sbjct: 20  MTKAEIVSKISDKLGLDRNDVQLTVENFMDEVINSLESGQNVYLRGFGSFIIKTRAEKTG 79

Query: 65  RNLQTNQEVKIDPRRVVVFKASSIL 89
           RN+  N  +KI    +  FK + + 
Sbjct: 80  RNISKNTTIKIPAHNIPAFKPAKVF 104


>gi|33240850|ref|NP_875792.1| histone-like DNA-binding protein [Prochlorococcus marinus subsp.
          marinus str. CCMP1375]
 gi|33238379|gb|AAQ00445.1| Bacterial nucleoid DNA-binding protein [Prochlorococcus marinus
          subsp. marinus str. CCMP1375]
          Length = 91

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ D    V      I DS V G+ + I  F +F  + + +R G
Sbjct: 1  MNKADLVNLVAARTELTKTDVALVVDAAIETIVDSVVEGKKVSILGFGSFEPRDRSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T +++KI  +RV  F A  + K R+
Sbjct: 61 LNPKTGEKIKIPAKRVPAFTAGKLFKDRV 89


>gi|37524501|ref|NP_927845.1| Na-binding protein HU-alpha (NS2) (HU-2) [Photorhabdus
          luminescens subsp. laumondii TTO1]
 gi|36783925|emb|CAE12787.1| NA-binding protein HU-alpha (NS2) (HU-2) [Photorhabdus
          luminescens subsp. laumondii TTO1]
          Length = 90

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++   L++  +   + +  N I +S   G+++++  F TF V  +  R G
Sbjct: 1  MNKTELVDAIAESTELTKAQAKAALESTLNAITESLKAGDSVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I    V  F A   LK  +
Sbjct: 61 RNPQTGKEITIAAANVPAFSAGKALKDAV 89


>gi|86143784|ref|ZP_01062160.1| DNA-binding protein HU [Leeuwenhoekiella blandensis MED217]
 gi|85829827|gb|EAQ48289.1| DNA-binding protein HU [Leeuwenhoekiella blandensis MED217]
          Length = 98

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 45/85 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  IS++ G+ + D    V T   E+ +S   G+ + +  F +F +K +  + G
Sbjct: 1  MTKADIVAKISEKLGIEKNDVQATVETFMTEVKNSLEGGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  +KI    +  FK + + 
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVF 85


>gi|330970215|gb|EGH70281.1| histone-like DNA-binding protein [Pseudomonas syringae pv. aceris
          str. M302273PT]
          Length = 91

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 45/84 (53%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + D+  +I+++  L+++ S R +  +  EI  +  R +++ +    TF  + +G+R G+N
Sbjct: 3  KPDVAAAIAEKADLTKEQSNRVLNAILEEITGALNRKDSVTLVGLGTFLQRHRGARTGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT + VKI     V FK    LK
Sbjct: 63 PQTGEPVKIKASNTVAFKPGKALK 86


>gi|149910317|ref|ZP_01898961.1| DNA-binding protein, HU family [Moritella sp. PE36]
 gi|149806677|gb|EDM66644.1| DNA-binding protein, HU family [Moritella sp. PE36]
          Length = 91

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  ++ +  +S+  + R +  +   + ++ V  E++ +  F TF V+ + +R G
Sbjct: 1  MNKAQLIDCVAAKADISKAAAGRAIDAMIESVTETLVTEESVTLVGFGTFSVRDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT  E++I   ++  FKA  +LK
Sbjct: 61 RNPQTGAEIQIAASKLPAFKAGKLLK 86


>gi|311745198|ref|ZP_07718983.1| DNA-binding protein HU [Algoriphagus sp. PR1]
 gi|126577721|gb|EAZ81941.1| DNA-binding protein HU [Algoriphagus sp. PR1]
          Length = 102

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 53/102 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+++++  IS + G+ + D T+ V   F  + DS   GE I +  F +F  K++  ++ 
Sbjct: 1   MTKAEVITKISDKTGIQKDDVTQTVEAFFKVVKDSMSEGENIYVRGFGSFINKKRAKKIA 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           RN+  N  + ID   +  FK S +  ++I +  + ++    D
Sbjct: 61  RNISKNTAIVIDEHYIPAFKPSKVFVEKIKNSKKIKELAPQD 102


>gi|146309415|ref|YP_001189880.1| nucleoid protein HU alpha subunit [Pseudomonas mendocina ymp]
 gi|145577616|gb|ABP87148.1| bacterial nucleoid protein HU alpha subunit [Pseudomonas
          mendocina ymp]
          Length = 90

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L  +I+++  L++  + R +  +  EI  +  R +++ +  F TF  + +G+R G+N
Sbjct: 3  KPELAAAIAEKADLTKDQANRVLNAVLEEITGALNRKDSVTLVGFGTFVQRHRGARTGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT Q VKI     V FK    LK
Sbjct: 63 PQTGQPVKIKASNTVAFKPGKSLK 86


>gi|213963610|ref|ZP_03391862.1| DNA-binding protein HU-beta [Capnocytophaga sputigena Capno]
 gi|213953738|gb|EEB65068.1| DNA-binding protein HU-beta [Capnocytophaga sputigena Capno]
          Length = 92

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 51/85 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+ E GL++ D+ + V   F+ +  S  +G+ + I  F ++ V +K +R  
Sbjct: 1  MNKTELIDAIAAEAGLTKADAKKAVEAFFSNVEKSLKQGKKVAIVGFGSWSVTKKEARDA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN +T   +K+  ++VV FKA + L
Sbjct: 61 RNPRTGAVIKVPAKKVVKFKAGTEL 85


>gi|167854637|ref|ZP_02477417.1| integration host factor, alpha chain [Haemophilus parasuis 29755]
 gi|219870912|ref|YP_002475287.1| integration host factor subunit alpha [Haemophilus parasuis
          SH0165]
 gi|254803517|sp|B8F4T7|IHFA_HAEPS RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|167854174|gb|EDS25408.1| integration host factor, alpha chain [Haemophilus parasuis 29755]
 gi|219691116|gb|ACL32339.1| integration host factor, alpha chain/bacterial nucleoid
          DNA-binding protein [Haemophilus parasuis SH0165]
          Length = 98

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 56/90 (62%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+ ++ +++ +  GL ++ + +FV   F EI  S   GE +K+S F  F V+ K +R 
Sbjct: 2  ALTKIEIAENLVERCGLDKRIAKQFVEDFFEEIRRSLESGEEVKLSGFGNFTVRDKKARP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++V +  RRVVVFKA   L++R+
Sbjct: 62 GRNPKTGEDVAVSARRVVVFKAGQKLRERV 91


>gi|71278109|ref|YP_268791.1| HU family DNA-binding protein [Colwellia psychrerythraea 34H]
 gi|71143849|gb|AAZ24322.1| DNA-binding protein, HU family [Colwellia psychrerythraea 34H]
          Length = 91

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  IS+   +++  + R + +L + +      G  + +  F T+ V  + +R G
Sbjct: 1  MNKSELIAKISEGADITKASAGRALDSLIDSVTTELASGGDVALVGFGTYKVNDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I   +V  FKA   LK  +
Sbjct: 61 RNPQTGAEIQISAAKVPAFKAGKALKDAV 89


>gi|13472793|ref|NP_104360.1| integration host factor subunit beta [Mesorhizobium loti
          MAFF303099]
 gi|260460500|ref|ZP_05808751.1| integration host factor, beta subunit [Mesorhizobium
          opportunistum WSM2075]
 gi|319781467|ref|YP_004140943.1| integration host factor, subunit beta [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
 gi|21362613|sp|Q98GS0|IHFB_RHILO RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|14023540|dbj|BAB50146.1| integration host factor beta chain [Mesorhizobium loti
          MAFF303099]
 gi|259033605|gb|EEW34865.1| integration host factor, beta subunit [Mesorhizobium
          opportunistum WSM2075]
 gi|317167355|gb|ADV10893.1| integration host factor, beta subunit [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
          Length = 94

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I+ +   L  +D    V  +F+EI D+   G  +++  F  F VK + +R 
Sbjct: 1  MIKSELVQIIATRNPHLFLRDVENIVGAIFDEITDALAEGNRVELRGFGAFSVKNRPART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V+++ + V  FK    L++R+
Sbjct: 61 GRNPRTGESVEVEEKWVPFFKTGKELRERL 90


>gi|283852456|ref|ZP_06369725.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          FW1012B]
 gi|303249426|ref|ZP_07335647.1| histone family protein DNA-binding protein [Desulfovibrio
          fructosovorans JJ]
 gi|283572194|gb|EFC20185.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          FW1012B]
 gi|302489168|gb|EFL49139.1| histone family protein DNA-binding protein [Desulfovibrio
          fructosovorans JJ]
          Length = 100

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+T++D+V  I ++   +R +    V  L   +  S  +  ++ +S F  F    K +R
Sbjct: 4  KTLTKADIVDYIYEKTERNRAEVKVLVDHLLELMKQSIKKDHSLLVSGFGKFESYDKKAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKAS 86
           GRN QTN+ + + PR+VVVF+ S
Sbjct: 64 KGRNPQTNESIMLPPRKVVVFRLS 87


>gi|14194654|sp|Q9LA96|DBHA_AERHY RecName: Full=DNA-binding protein HU-alpha
          Length = 90

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV +I+ +  LS+  +   +  + N I  S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVNHRAGRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I    V  F A   LK  +
Sbjct: 61 RNPQTGKEIQIAAANVPSFVAGKALKDAV 89


>gi|254520528|ref|ZP_05132584.1| histone family protein DNA-binding protein [Clostridium sp.
          7_2_43FAA]
 gi|226914277|gb|EEH99478.1| histone family protein DNA-binding protein [Clostridium sp.
          7_2_43FAA]
          Length = 91

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S+S++  L++KD+   + +    + ++  +GE +++  F TF  +++ +R G
Sbjct: 1  MNKAELITSMSEKSKLTKKDAELALKSFIESVEEALEKGEKVQLVGFGTFETRERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I    V VFKA    K+++
Sbjct: 61 RNPRTKETINIPASTVPVFKAGKEFKEKV 89


>gi|319898049|ref|YP_004136246.1| DNA-binding protein hu [Haemophilus influenzae F3031]
 gi|317433555|emb|CBY81939.1| DNA-binding protein HU [Haemophilus influenzae F3031]
          Length = 90

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+    L++K +   +    + I  S  +GE +++  F TF V ++ +R G
Sbjct: 1  MNKTNLIDAIANAAELNKKQAKAALEATLDAITASLKKGEPVQLIGFGTFKVNERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I   +V  F +   LK  I
Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAI 89


>gi|291615208|ref|YP_003525365.1| histone family protein DNA-binding protein [Sideroxydans
          lithotrophicus ES-1]
 gi|291585320|gb|ADE12978.1| histone family protein DNA-binding protein [Sideroxydans
          lithotrophicus ES-1]
          Length = 94

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +L+ +++ + G S+ D+ R +  L + +  +  +G+ + +  F TF V+++ +R G
Sbjct: 1  MNRKELIDALATKTGSSKADADRNIAALIDIVTATLKKGDNVALVGFGTFEVRKRAARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T   +KI   +   FKA + LK  +
Sbjct: 61 RNPSTGAAIKIKASKQPAFKAGATLKAAV 89


>gi|109898780|ref|YP_662035.1| integration host factor, beta subunit [Pseudoalteromonas
          atlantica T6c]
 gi|332306875|ref|YP_004434726.1| integration host factor, beta subunit [Glaciecola agarilytica
          4H-3-7+YE-5]
 gi|123171106|sp|Q15T07|IHFB_PSEA6 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|109701061|gb|ABG40981.1| integration host factor, beta subunit [Pseudoalteromonas
          atlantica T6c]
 gi|332174204|gb|AEE23458.1| integration host factor, beta subunit [Glaciecola agarilytica
          4H-3-7+YE-5]
          Length = 96

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 54/94 (57%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ K   +  +D    +  +  ++  +  +GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLADKARHVPSRDVELAIKEMLEQMAQTLQKGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T + V++D + V  FK    L++R+ +D+
Sbjct: 61 GRNPKTGETVELDGKHVPHFKPGKELRERVNEDL 94


>gi|242240289|ref|YP_002988470.1| transcriptional regulator HU subunit beta [Dickeya dadantii
          Ech703]
 gi|242132346|gb|ACS86648.1| histone family protein DNA-binding protein [Dickeya dadantii
          Ech703]
          Length = 90

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R +  +   + +S   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAADADISKAAAGRVLDAIIGSVTESLKAGDDVALVGFGTFAVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F+A   LK  +
Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKALKDAV 89


>gi|260768944|ref|ZP_05877878.1| DNA-binding protein HU-beta [Vibrio furnissii CIP 102972]
 gi|260616974|gb|EEX42159.1| DNA-binding protein HU-beta [Vibrio furnissii CIP 102972]
 gi|315180640|gb|ADT87554.1| DNA-binding protein HU-beta [Vibrio furnissii NCTC 11218]
          Length = 90

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I+    +S+  + R +      + D+   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVEQIAANADISKASAGRALDAFIEAVSDTLQSGDQVALVGFGTFAVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E++I   +V  FKA   LK
Sbjct: 61 RNPKTGEEIQIAEAKVPAFKAGKALK 86


>gi|14194637|sp|Q9XB20|DBH_STRGN RecName: Full=DNA-binding protein HU
 gi|5209334|gb|AAD40811.1|L40356_1 histone-like DNA-binding protein [Streptococcus gordonii]
          Length = 91

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  ++    L++KDS   V  +F  + +   +GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAAATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E KI   +V  FKA   LK
Sbjct: 64 PQTGKETKIAASKVPAFKAGKALK 87


>gi|306825075|ref|ZP_07458417.1| DNA-binding protein HU [Streptococcus sp. oral taxon 071 str.
          73H25AP]
 gi|304432511|gb|EFM35485.1| DNA-binding protein HU [Streptococcus sp. oral taxon 071 str.
          73H25AP]
          Length = 91

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F  + +    GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATDLTKKDSAAAVDAVFAAVTEYLTAGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E++I   +V  FKA   LK
Sbjct: 64 PQTGKEIEIAASKVPAFKAGKALK 87


>gi|33592108|ref|NP_879752.1| integration host factor beta-subunit [Bordetella pertussis Tohama
           I]
 gi|33571752|emb|CAE41253.1| integration host factor beta-subunit [Bordetella pertussis Tohama
           I]
 gi|332381524|gb|AEE66371.1| integration host factor beta-subunit [Bordetella pertussis CS]
          Length = 119

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 58/102 (56%), Gaps = 3/102 (2%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+ +++  +  L+ +D+   V T+ + +  +   G+ I+I  F +F + Q+  R+
Sbjct: 1   MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           GRN ++ ++V +  ++V  FKA   L++ +  D+ G     D
Sbjct: 61  GRNPKSGEQVLVPGKQVPHFKAGKELREWV--DLVGNDQGDD 100


>gi|330505647|ref|YP_004382516.1| nucleoid protein HU subunit alpha [Pseudomonas mendocina NK-01]
 gi|328919933|gb|AEB60764.1| nucleoid protein HU alpha subunit [Pseudomonas mendocina NK-01]
          Length = 90

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L  +I+++  L++  + R +  +  EI  +  R +++ +  F TF  + +G+R G+N
Sbjct: 3  KPELAAAIAEKTDLTKDQANRVLNAVLEEITGALNRKDSVTLVGFGTFVQRHRGARTGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT Q VKI     V FK    LK
Sbjct: 63 PQTGQPVKIKASNTVAFKPGKSLK 86


>gi|260587366|ref|ZP_05853279.1| DNA-binding protein HU [Blautia hansenii DSM 20583]
 gi|331083667|ref|ZP_08332778.1| DNA-binding protein HU [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260542233|gb|EEX22802.1| DNA-binding protein HU [Blautia hansenii DSM 20583]
 gi|330403878|gb|EGG83430.1| DNA-binding protein HU [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 91

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R++LV +++++  LS+KD+   +    + + +   +GE +++  F TF V ++ +R G
Sbjct: 1  MNRTELVAAMAEKTQLSKKDADLALKAFIDVVSEEMQKGEKVQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + + I   +   FKA   LK
Sbjct: 61 RNPQTGETMTIAASKSPKFKAGKALK 86


>gi|119476199|ref|ZP_01616551.1| DNA-binding protein HU [marine gamma proteobacterium HTCC2143]
 gi|119450826|gb|EAW32060.1| DNA-binding protein HU [marine gamma proteobacterium HTCC2143]
          Length = 90

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I+    L +  + R +  +   +  +   G+ + +  F TF VK + +R G
Sbjct: 1  MNKSELIEAIAASADLPKAAAGRALDAMVETVTGALKDGDQVVLVGFGTFAVKDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I   +V  FKA   LK  +
Sbjct: 61 RNPQTGAEIQIKAAKVPGFKAGKALKDAV 89


>gi|312879957|ref|ZP_07739757.1| bacterial nucleoid protein Hbs [Aminomonas paucivorans DSM 12260]
 gi|310783248|gb|EFQ23646.1| bacterial nucleoid protein Hbs [Aminomonas paucivorans DSM 12260]
          Length = 93

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T++DLV  ++K    L++K +   V  LF  +  +  +G+ +++  F TF V+++ +R 
Sbjct: 1  MTKADLVNELAKAVEDLTKKKAAEIVDALFETVQGALAKGDKVQVVGFGTFEVQRRAARQ 60

Query: 64 GRNLQ-TNQEVKIDPRRVVVFKASSILK 90
          GRN Q   + + I  + V VF+A   LK
Sbjct: 61 GRNPQDPKKTINIPAKNVPVFRAGKALK 88


>gi|71083518|ref|YP_266237.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter
          ubique HTCC1062]
 gi|91762063|ref|ZP_01264028.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter
          ubique HTCC1002]
 gi|71062631|gb|AAZ21634.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter
          ubique HTCC1062]
 gi|91717865|gb|EAS84515.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter
          ubique HTCC1002]
          Length = 91

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 49/87 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  L+  +S    LS+ D+ R   T+ N I D+    + +KI+ F T+ V ++ +RVG
Sbjct: 1  MNKKQLIAQLSGSLNLSKADAERTFDTITNTILDALKGDDTVKIAGFGTYKVAKRKARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T ++++I   + V F  +  LK+
Sbjct: 61 RNPRTGEQIQIGASQKVKFLPAKALKE 87


>gi|315419711|gb|ADU15825.1| histone-like protein [Streptococcus parasanguinis]
          Length = 91

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 49/84 (58%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F  + +   +GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E++I   +V  FKA   LK
Sbjct: 64 PQTGKEIEIAASKVPTFKAGKALK 87


>gi|253996886|ref|YP_003048950.1| integration host factor subunit beta [Methylotenera mobilis JLW8]
 gi|253983565|gb|ACT48423.1| integration host factor, beta subunit [Methylotenera mobilis
          JLW8]
          Length = 93

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  +++ F  L  KD+   V  + + + D+   GE I+I  F +F +  +  R+
Sbjct: 1  MTKSELITLLAERFPQLVMKDAELSVKAILDAMSDNLATGERIEIRGFGSFSLNYRPPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  +V++  + V  FKA   L++R+
Sbjct: 61 GRNPKTGSKVEVPEKHVPHFKAGKELRERV 90


>gi|218282473|ref|ZP_03488732.1| hypothetical protein EUBIFOR_01314 [Eubacterium biforme DSM 3989]
 gi|218216569|gb|EEC90107.1| hypothetical protein EUBIFOR_01314 [Eubacterium biforme DSM 3989]
          Length = 95

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 9/104 (8%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           M K + +  L +++S +  +S+KD+   V  +FNE+ D+      + I++F  F +  + 
Sbjct: 1   MGKYVNKESLTQTLSIQLNMSKKDAAYAVDLIFNEMSDALASDGHVDITAFGKFEIFDRK 60

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           SR+G N  T + + I   ++  F+ S  LK          KCNK
Sbjct: 61  SRMGINPVTKERMMIQATKLPKFRPSQTLK---------NKCNK 95


>gi|16759431|ref|NP_455048.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhi str. CT18]
 gi|16763832|ref|NP_459447.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhimurium str. LT2]
 gi|29142797|ref|NP_806139.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhi str. Ty2]
 gi|56414393|ref|YP_151468.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62179063|ref|YP_215480.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161504372|ref|YP_001571484.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|161615354|ref|YP_001589319.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167551733|ref|ZP_02345486.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA29]
 gi|167990435|ref|ZP_02571535.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar 4,[5],12:i:- str. CVM23701]
 gi|168231440|ref|ZP_02656498.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Kentucky str. CDC 191]
 gi|168237566|ref|ZP_02662624.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. SL480]
 gi|168240280|ref|ZP_02665212.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL486]
 gi|168261112|ref|ZP_02683085.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
 gi|168465545|ref|ZP_02699427.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Newport str. SL317]
 gi|168818937|ref|ZP_02830937.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Weltevreden str. HI_N05-537]
 gi|194446645|ref|YP_002039694.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Newport str. SL254]
 gi|194449059|ref|YP_002044486.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Heidelberg str. SL476]
 gi|194469706|ref|ZP_03075690.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Kentucky str. CVM29188]
 gi|194735846|ref|YP_002113482.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197249293|ref|YP_002145432.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Agona str. SL483]
 gi|197265364|ref|ZP_03165438.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA23]
 gi|197363313|ref|YP_002142950.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198246187|ref|YP_002214405.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Dublin str. CT_02021853]
 gi|200390435|ref|ZP_03217046.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Virchow str. SL491]
 gi|204930591|ref|ZP_03221521.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Javiana str. GA_MM04042433]
 gi|205351762|ref|YP_002225563.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Gallinarum str. 287/91]
 gi|207855931|ref|YP_002242582.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Enteritidis str. P125109]
 gi|213160791|ref|ZP_03346501.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhi str. E00-7866]
 gi|213419827|ref|ZP_03352893.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhi str. E01-6750]
 gi|213425853|ref|ZP_03358603.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhi str. E02-1180]
 gi|213582252|ref|ZP_03364078.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhi str. E98-0664]
 gi|213622866|ref|ZP_03375649.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhi str. E98-2068]
 gi|213646002|ref|ZP_03376055.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhi str. J185]
 gi|213850135|ref|ZP_03381033.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhi str. M223]
 gi|224582289|ref|YP_002636087.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238911418|ref|ZP_04655255.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|289811835|ref|ZP_06542464.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhi str. AG3]
 gi|60392171|sp|P0A1R8|DBHB_SALTY RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1;
          AltName: Full=NS1
 gi|60392172|sp|P0A1R9|DBHB_SALTI RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1;
          AltName: Full=NS1
 gi|25294358|pir||AF0558 DNA-binding protein HU-beta [imported] - Salmonella enterica
          subsp. enterica serovar Typhi (strain CT18)
 gi|581767|emb|CAA30692.1| unnamed protein product [Salmonella enterica subsp. enterica
          serovar Typhimurium]
 gi|16418958|gb|AAL19406.1| DNA-binding protein HU-beta, NS1 (HU-1) [Salmonella enterica
          subsp. enterica serovar Typhimurium str. LT2]
 gi|16501722|emb|CAD08910.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Typhi]
 gi|29138429|gb|AAO69999.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|56128650|gb|AAV78156.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|62126696|gb|AAX64399.1| DNA-binding protein HU-beta, NS1 (HU-1) [Salmonella enterica
          subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|160865719|gb|ABX22342.1| hypothetical protein SARI_02483 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
 gi|161364718|gb|ABX68486.1| hypothetical protein SPAB_03125 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|194405308|gb|ACF65530.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
 gi|194407363|gb|ACF67582.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL476]
 gi|194456070|gb|EDX44909.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Kentucky str. CVM29188]
 gi|194711348|gb|ACF90569.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|195631882|gb|EDX50402.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Newport str. SL317]
 gi|197094790|emb|CAR60323.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
 gi|197212996|gb|ACH50393.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Agona str. SL483]
 gi|197243619|gb|EDY26239.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA23]
 gi|197289548|gb|EDY28911.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. SL480]
 gi|197940703|gb|ACH78036.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Dublin str. CT_02021853]
 gi|199602880|gb|EDZ01426.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Virchow str. SL491]
 gi|204320525|gb|EDZ05728.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Javiana str. GA_MM04042433]
 gi|205271543|emb|CAR36361.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|205323417|gb|EDZ11256.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA29]
 gi|205330927|gb|EDZ17691.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar 4,[5],12:i:- str. CVM23701]
 gi|205333955|gb|EDZ20719.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Kentucky str. CDC 191]
 gi|205339741|gb|EDZ26505.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL486]
 gi|205344199|gb|EDZ30963.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Weltevreden str. HI_N05-537]
 gi|205350073|gb|EDZ36704.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
 gi|206707734|emb|CAR32019.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|224466816|gb|ACN44646.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
 gi|261245734|emb|CBG23531.1| DNA-binding protein Hu-beta [Salmonella enterica subsp. enterica
          serovar Typhimurium str. D23580]
 gi|267992167|gb|ACY87052.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157062|emb|CBW16546.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Typhimurium str. SL1344]
 gi|312911484|dbj|BAJ35458.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhimurium str. T000240]
 gi|320084725|emb|CBY94516.1| Integration host factor subunit beta IHF-beta [Salmonella
          enterica subsp. enterica serovar Weltevreden str.
          2007-60-3289-1]
 gi|321226029|gb|EFX51080.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Typhimurium str. TN061786]
 gi|322614729|gb|EFY11658.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 315996572]
 gi|322618835|gb|EFY15723.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 495297-1]
 gi|322623542|gb|EFY20381.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629159|gb|EFY25938.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631880|gb|EFY28634.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637383|gb|EFY34085.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642068|gb|EFY38678.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 531954]
 gi|322647887|gb|EFY44362.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str.
          NC_MB110209-0054]
 gi|322652565|gb|EFY48919.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653273|gb|EFY49606.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str.
          CASC_09SCPH15965]
 gi|322660578|gb|EFY56814.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 19N]
 gi|322664730|gb|EFY60923.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669217|gb|EFY65367.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670762|gb|EFY66895.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 414877]
 gi|322678999|gb|EFY75054.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 366867]
 gi|322682028|gb|EFY78053.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 413180]
 gi|322685143|gb|EFY81140.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 446600]
 gi|322713524|gb|EFZ05095.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Choleraesuis str. A50]
 gi|323128771|gb|ADX16201.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhimurium str. 4/74]
 gi|323192963|gb|EFZ78186.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196955|gb|EFZ82097.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 556150-1]
 gi|323203940|gb|EFZ88957.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 609460]
 gi|323206975|gb|EFZ91928.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 507440-20]
 gi|323214178|gb|EFZ98936.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 556152]
 gi|323214498|gb|EFZ99249.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323219160|gb|EGA03657.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227004|gb|EGA11185.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230178|gb|EGA14298.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233916|gb|EGA18005.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238390|gb|EGA22448.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244077|gb|EGA28086.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 315731156]
 gi|323246238|gb|EGA30221.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251864|gb|EGA35727.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323257860|gb|EGA41539.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261126|gb|EGA44718.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264944|gb|EGA48443.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323272507|gb|EGA55914.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326622154|gb|EGE28499.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Dublin str. 3246]
 gi|326626797|gb|EGE33140.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Gallinarum str. 9]
 gi|332987400|gb|AEF06383.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhimurium str. UK-1]
 gi|226110|prf||1410323A histone-like protein
          Length = 90

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L++ I+    +S+  + R +  +   + +S   G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F+A   LK  +
Sbjct: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89


>gi|325279829|ref|YP_004252371.1| histone family protein DNA-binding protein [Odoribacter
          splanchnicus DSM 20712]
 gi|324311638|gb|ADY32191.1| histone family protein DNA-binding protein [Odoribacter
          splanchnicus DSM 20712]
          Length = 89

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 52/88 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+ +I+++ GL++ DS + +      + ++   G+ + +  F +F V ++ +R G
Sbjct: 1  MNKAQLIDAIAEKAGLTKADSKKALEAFVETVGEALKGGDKVALIGFGSFSVSERSARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN QT + + I  ++VV FKA + L ++
Sbjct: 61 RNPQTGKTITIPAKKVVKFKAGAELAEK 88


>gi|77461821|ref|YP_351328.1| nucleoid protein HU alpha subunit [Pseudomonas fluorescens Pf0-1]
 gi|77385824|gb|ABA77337.1| DNA-binding protein HU1 [Pseudomonas fluorescens Pf0-1]
          Length = 91

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L  +I+++  L+++ + R +  +  EI  +  R +++ +  F TF  + +G+R G+N
Sbjct: 3  KPELAAAIAEKADLTKEQANRVLNAVLEEITGALHRKDSVTLVGFGTFLQRHRGARTGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT + VKI     V FK    LK
Sbjct: 63 PQTGEPVKIKASNTVAFKPGKSLK 86


>gi|331001373|ref|ZP_08324997.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT
          11859]
 gi|329568632|gb|EGG50434.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT
          11859]
          Length = 91

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 52/86 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+++++ +  +S+  + R V  + + I ++   G+ +++  F TF V ++ +R G
Sbjct: 2  MNKADLIEAVAIKCDISKLAAQRAVDAMIDTITNALQNGKEVQLLGFGTFSVVERAARKG 61

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RNL+TN+ + I  R+V  F A   LK
Sbjct: 62 RNLRTNKSIDIPARKVPKFVAGKNLK 87


>gi|313904045|ref|ZP_07837425.1| histone family protein DNA-binding protein [Eubacterium
          cellulosolvens 6]
 gi|313471194|gb|EFR66516.1| histone family protein DNA-binding protein [Eubacterium
          cellulosolvens 6]
          Length = 89

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ V+ I+++ G ++KD+  FV      I ++   G+ +    F T+ V+++ +R G
Sbjct: 1  MNKTEFVQKIAEKTGSTKKDAAAFVDAYAEVITEALKSGDKVAFPGFGTYEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN  T + ++I   +   FKA   LK
Sbjct: 61 RNPATGETIQIAASKSPAFKAGKALK 86


>gi|312795456|ref|YP_004028378.1| integration host factor beta-subunit [Burkholderia rhizoxinica HKI
           454]
 gi|312167231|emb|CBW74234.1| Integration host factor beta-subunit [Burkholderia rhizoxinica HKI
           454]
          Length = 109

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 2/106 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V  + + + D+   G  I+I  F +F + ++ +RV
Sbjct: 1   MTKSELVAQLALRFPQLVLKDADFAVKAMLDAMSDALANGHRIEIRGFGSFALNRRPARV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
           GRN ++ + V++  + V  FK    L++R+ D   G+    D V +
Sbjct: 61  GRNPKSGERVQVPEKWVPHFKPGKELRERV-DGKAGQPMKADSVEA 105


>gi|310766847|gb|ADP11797.1| HopD, DNA-binding protein HU-beta (Synonym HupB) [Erwinia sp.
          Ejp617]
          Length = 90

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L++ I+ +  +S+    R +    + +  S   GE + + +F TF V+++  R G
Sbjct: 1  MNKSQLIEKIAADADVSKAAVGRILEAFIDTVTKSLQAGEEVALLNFGTFSVRERAERPG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I  R+V  F+A   L++ +
Sbjct: 61 RNPQTGKEITIAARKVAGFRAGKELREAV 89


>gi|239904866|ref|YP_002951604.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
          RS-1]
 gi|239794729|dbj|BAH73718.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
          RS-1]
          Length = 100

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 46/84 (54%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+T++D+V  I ++   +R +    V  L   +  S  R  ++ +S F  F    K +R
Sbjct: 4  KTLTKADIVDYIYEKTERNRAEVKVLVDHLLELMKQSIKRDNSLLVSGFGKFESYDKKAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKAS 86
           GRN QTN  + + PR+VVVF+ S
Sbjct: 64 KGRNPQTNASIMLPPRKVVVFRLS 87


>gi|309813025|ref|ZP_07706753.1| DNA-binding protein HB1 [Dermacoccus sp. Ellin185]
 gi|308433097|gb|EFP57001.1| DNA-binding protein HB1 [Dermacoccus sp. Ellin185]
          Length = 91

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + RSDL  +I++  G+S KD+T  +  L + I ++  RG+ I++    T    ++ +R G
Sbjct: 1  MNRSDLASTIAQRTGVSVKDATAVLAGLNDVIIEAVGRGDKIQLPGLLTIERVERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT  E++I         A S LK
Sbjct: 61 RNPQTGAEIEIPAGYAAKVTAGSKLK 86


>gi|108760828|ref|YP_631695.1| integration host factor subunit beta [Myxococcus xanthus DK 1622]
 gi|27804850|gb|AAO22888.1| hypothetical protein [Myxococcus xanthus]
 gi|108464708|gb|ABF89893.1| integration host factor, beta subunit [Myxococcus xanthus DK
          1622]
          Length = 127

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRS+L++ I  +   + R++    V  +F E+  + + G  I++  F  F V+ + +R 
Sbjct: 1  MTRSELIERIVERATHVPRREVEAIVHAVFEEMSQALIAGRRIELRGFGVFCVRTRRART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T Q V +  RR + F A   L++R+
Sbjct: 61 GRNPKTGQRVSVPARRTLSFAAGKDLRERL 90


>gi|260913274|ref|ZP_05919756.1| DNA-binding protein HU [Pasteurella dagmatis ATCC 43325]
 gi|260632861|gb|EEX51030.1| DNA-binding protein HU [Pasteurella dagmatis ATCC 43325]
          Length = 90

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+    L++K +   +      I  S   G+ +++  F TF V ++ +R G
Sbjct: 1  MNKTDLIDAIASAAELNKKQAKAALEATLEAISGSLKAGQPVQLIGFGTFKVNERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT  E+KI   +V  F A   LK
Sbjct: 61 RNPQTGAEIKIAASKVPAFVAGKALK 86


>gi|77919476|ref|YP_357291.1| nucleoid DNA-binding protein [Pelobacter carbinolicus DSM 2380]
 gi|77545559|gb|ABA89121.1| nucleoid DNA-binding protein [Pelobacter carbinolicus DSM 2380]
          Length = 94

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ +S   G LS+K+S   V TL + I D+ V G+ ++I  F +F V+ + +R 
Sbjct: 1  MTKSELIEELSYLNGILSKKESELVVNTLLDGIRDALVGGDRVEIRGFGSFTVRTREARE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN ++ + V I  ++   FK    L++R+
Sbjct: 61 ARNPKSGEVVAIPAKKTAFFKTGKQLRERV 90


>gi|15964139|ref|NP_384492.1| integration host factor subunit beta [Sinorhizobium meliloti 1021]
 gi|307301284|ref|ZP_07581046.1| integration host factor, beta subunit [Sinorhizobium meliloti
           BL225C]
 gi|307317955|ref|ZP_07597392.1| integration host factor, beta subunit [Sinorhizobium meliloti AK83]
 gi|21362611|sp|Q92SJ7|IHFB_RHIME RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|15073315|emb|CAC41823.1| Probable integration host factor beta-subunit [Sinorhizobium
           meliloti 1021]
 gi|306896357|gb|EFN27106.1| integration host factor, beta subunit [Sinorhizobium meliloti AK83]
 gi|306903740|gb|EFN34327.1| integration host factor, beta subunit [Sinorhizobium meliloti
           BL225C]
          Length = 103

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 1/103 (0%)

Query: 5   ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV+ ++ +   L  +D    V  + +EI D+   G  +++  F  F VK + SR 
Sbjct: 1   MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN +T   V ++ + V  FK    L++R+   M      +DD
Sbjct: 61  GRNPRTGDSVFVEEKWVPFFKTGKELRERLNPGMNDNNNGEDD 103


>gi|255994801|ref|ZP_05427936.1| DNA-binding protein HU [Eubacterium saphenum ATCC 49989]
 gi|255993514|gb|EEU03603.1| DNA-binding protein HU [Eubacterium saphenum ATCC 49989]
          Length = 92

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  I+++ G ++KD+   +    + + ++ ++GE +++  F TF  + + +R G
Sbjct: 1  MNKADLVAVIAEKTGFTKKDAEATINAFVSTVEEALIKGEKVQLIGFGTFEARDRKARKG 60

Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93
          RN +   EV KI   +  VFKA   LK  +
Sbjct: 61 RNPRNPGEVIKIPASKAPVFKAGKALKAAV 90


>gi|288958412|ref|YP_003448753.1| DNA-binding protein HU-beta [Azospirillum sp. B510]
 gi|288910720|dbj|BAI72209.1| DNA-binding protein HU-beta [Azospirillum sp. B510]
          Length = 91

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+++++   G+ + D+ + V  +F  I  +  RGE ++++ F  F V ++ +R G
Sbjct: 1  MNQAELIETVATNAGIKKADAAKVVQAVFEGISGALGRGEDVRLAGFGIFEVAERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + V I   +   FK +  L+
Sbjct: 61 RNPRTGEVVAIAASKAPKFKPAKQLR 86


>gi|32035258|ref|ZP_00135276.1| COG0776: Bacterial nucleoid DNA-binding protein [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
 gi|126208092|ref|YP_001053317.1| integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae L20]
 gi|165976025|ref|YP_001651618.1| integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 3 str. JL03]
 gi|190149925|ref|YP_001968450.1| integration host factor, alpha chain [Actinobacillus
          pleuropneumoniae serovar 7 str. AP76]
 gi|303251009|ref|ZP_07337196.1| integration host factor, alpha chain [Actinobacillus
          pleuropneumoniae serovar 6 str. Femo]
 gi|303252240|ref|ZP_07338408.1| integration host factor, alpha chain [Actinobacillus
          pleuropneumoniae serovar 2 str. 4226]
 gi|307245471|ref|ZP_07527559.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
 gi|307247585|ref|ZP_07529629.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 2 str. S1536]
 gi|307249814|ref|ZP_07531791.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 4 str. M62]
 gi|307252164|ref|ZP_07534063.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 6 str. Femo]
 gi|307254425|ref|ZP_07536263.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256636|ref|ZP_07538416.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 10 str. D13039]
 gi|307258884|ref|ZP_07540616.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 11 str. 56153]
 gi|307261070|ref|ZP_07542750.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 12 str. 1096]
 gi|307263249|ref|ZP_07544869.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 13 str. N273]
 gi|322514396|ref|ZP_08067442.1| integration host factor subunit alpha [Actinobacillus ureae ATCC
          25976]
 gi|166918495|sp|A3MZX6|IHFA_ACTP2 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226707365|sp|B3H139|IHFA_ACTP7 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226707366|sp|B0BNN9|IHFA_ACTPJ RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|126096884|gb|ABN73712.1| integration host factor, alpha chain [Actinobacillus
          pleuropneumoniae serovar 5b str. L20]
 gi|165876126|gb|ABY69174.1| integration host factor, alpha chain [Actinobacillus
          pleuropneumoniae serovar 3 str. JL03]
 gi|189915056|gb|ACE61308.1| integration host factor, alpha chain [Actinobacillus
          pleuropneumoniae serovar 7 str. AP76]
 gi|302649023|gb|EFL79211.1| integration host factor, alpha chain [Actinobacillus
          pleuropneumoniae serovar 2 str. 4226]
 gi|302650140|gb|EFL80309.1| integration host factor, alpha chain [Actinobacillus
          pleuropneumoniae serovar 6 str. Femo]
 gi|306853812|gb|EFM86029.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
 gi|306855950|gb|EFM88109.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 2 str. S1536]
 gi|306858164|gb|EFM90243.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 4 str. M62]
 gi|306860464|gb|EFM92478.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 6 str. Femo]
 gi|306862724|gb|EFM94680.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306864884|gb|EFM96787.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 10 str. D13039]
 gi|306867235|gb|EFM99091.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 11 str. 56153]
 gi|306869247|gb|EFN01044.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 12 str. 1096]
 gi|306871466|gb|EFN03190.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 13 str. N273]
 gi|322119712|gb|EFX91762.1| integration host factor subunit alpha [Actinobacillus ureae ATCC
          25976]
          Length = 98

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+ +L +S+ ++ G  ++ +  FV   F EI  S  +GE +K+S F  F +++K +R 
Sbjct: 2  ALTKIELAESLVEKCGFDKRIAKLFVEQFFEEIRSSLEKGEEVKLSGFGNFSLREKNARP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  RRVVVFK    L+ R+
Sbjct: 62 GRNPKTGETVAVTARRVVVFKPGQKLRDRV 91


>gi|315924899|ref|ZP_07921116.1| DNA-binding protein HU [Pseudoramibacter alactolyticus ATCC
          23263]
 gi|315621798|gb|EFV01762.1| DNA-binding protein HU [Pseudoramibacter alactolyticus ATCC
          23263]
          Length = 91

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV +++++ GL +KD+ + +T   + I ++  +G+ + +  F TF V+ + +R G
Sbjct: 1  MNKSELVAAMAEKTGLPKKDAEKALTAFTDTIVETLQKGDKVSLVGFGTFDVRHRAARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N +T + ++I       FKA    K
Sbjct: 61 LNPRTKEPIEIKASDAPAFKAGKAFK 86


>gi|303257389|ref|ZP_07343402.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
 gi|302859746|gb|EFL82824.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
          Length = 90

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 52/86 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+++++ +  +S+  + R V  + + I ++   G+ +++  F TF V ++ +R G
Sbjct: 1  MNKADLIEAVAIKCDISKLAAQRAVDAMIDTITNALQNGKEVQLLGFGTFSVVERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RNL+TN+ + I  R+V  F A   LK
Sbjct: 61 RNLRTNKSIDIPARKVPKFVAGKNLK 86


>gi|229593397|ref|YP_002875516.1| DNA-binding protein HU1 [Pseudomonas fluorescens SBW25]
 gi|312963898|ref|ZP_07778369.1| histone-like DNA-binding protein [Pseudomonas fluorescens WH6]
 gi|229365263|emb|CAY53586.1| DNA-binding protein HU1 [Pseudomonas fluorescens SBW25]
 gi|311281933|gb|EFQ60543.1| histone-like DNA-binding protein [Pseudomonas fluorescens WH6]
          Length = 91

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L  +I+++  L+++ + R +  +  EI  +  R +++ +  F TF  + +G+R G+N
Sbjct: 3  KPELAAAIAEKADLTKEQANRVLNAVLEEITGALHRKDSVTLVGFGTFLQRHRGARTGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT + VKI     V FK    LK
Sbjct: 63 PQTGEPVKIKASNTVAFKPGKSLK 86


>gi|257066457|ref|YP_003152713.1| histone family protein DNA-binding protein [Anaerococcus prevotii
          DSM 20548]
 gi|256798337|gb|ACV28992.1| histone family protein DNA-binding protein [Anaerococcus prevotii
          DSM 20548]
          Length = 92

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +IS++ GL + ++ + +      + +S V G+ +++  F TF V+ + +R G
Sbjct: 1  MNKSELLINISEKSGLKKSEAEKALNAFLETVTESLVEGDKVQLVGFGTFEVRDRKAREG 60

Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93
          RN +  +EV +I   +  VFKA   LK+ +
Sbjct: 61 RNPRKPEEVIQIPASKAPVFKAGKTLKEAV 90


>gi|218290666|ref|ZP_03494757.1| histone family protein DNA-binding protein [Alicyclobacillus
          acidocaldarius LAA1]
 gi|258510204|ref|YP_003183638.1| histone family protein DNA-binding protein [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
 gi|218239331|gb|EED06529.1| histone family protein DNA-binding protein [Alicyclobacillus
          acidocaldarius LAA1]
 gi|257476930|gb|ACV57249.1| histone family protein DNA-binding protein [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 90

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 48/87 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  ++++  L +KD+   V  +F  I ++   GE ++I  F TF  + + +R G
Sbjct: 1  MNKMELINRVAEKTNLKKKDAESAVNAVFEIIEEALANGEKVQIIGFGTFETRSRAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN QT + ++I    V  FK  + LK+
Sbjct: 61 RNPQTGEVIEIPASTVPAFKPGNKLKE 87


>gi|291434889|ref|YP_003518271.1| DNA-binding protein Hu-beta [Cupriavidus metallidurans CH34]
 gi|288259483|gb|ADC45367.1| DNA-binding protein Hu-beta (bacterial histone-like DNA-binding
          protein) [Cupriavidus metallidurans CH34]
          Length = 144

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ ++++   GL++  + + +    + I ++  RGE + +  F TF   ++G R+
Sbjct: 1  MTKSELIDAVARGVDGLTKTKAEQVLNATLDAIVEAVGRGETLSLIGFGTFSKGERGERM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
           RN +T +E++++  + V FKA    K
Sbjct: 61 ARNPRTGEEIRVEAAKTVKFKAGQRFK 87


>gi|313835866|gb|EFS73580.1| DNA-binding protein HU [Propionibacterium acnes HL037PA2]
 gi|314927134|gb|EFS90965.1| DNA-binding protein HU [Propionibacterium acnes HL044PA1]
 gi|314970776|gb|EFT14874.1| DNA-binding protein HU [Propionibacterium acnes HL037PA3]
 gi|328906040|gb|EGG25815.1| DNA-binding protein HU [Propionibacterium sp. P08]
          Length = 91

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 49/91 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+K+++K+  L+   +   V  L + I  +   GE +++    T    ++ +R G
Sbjct: 1  MTKSELIKAVAKQASLTEAQTNEAVKALTDVITAALAEGEKVQLPGLFTAEAVERPARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + + I   + V   ASS LKK + D
Sbjct: 61 RNPRTGESMTIPAHKAVKISASSTLKKAVAD 91


>gi|329296785|ref|ZP_08254121.1| transcriptional regulator HU subunit beta [Plautia stali
          symbiont]
          Length = 90

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R +      + D+   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAADADISKAAAGRVLDAFMGSVSDALKDGDEVALVGFGTFSVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F++   LK  +
Sbjct: 61 RNPQTGKEITIPAGKVPGFRSGKALKDAV 89


>gi|237725389|ref|ZP_04555870.1| DNA-binding protein HU [Bacteroides sp. D4]
 gi|265753597|ref|ZP_06088952.1| DNA-binding protein HU [Bacteroides sp. 3_1_33FAA]
 gi|229436076|gb|EEO46153.1| DNA-binding protein HU [Bacteroides dorei 5_1_36/D4]
 gi|263235311|gb|EEZ20835.1| DNA-binding protein HU [Bacteroides sp. 3_1_33FAA]
          Length = 90

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          + +  +S++ G + KD+++ V+++   +      G  I I  F TF VK+K  R+  N  
Sbjct: 5  EFISELSRKLGYTNKDTSQLVSSVIGVMTQELQDGNNIVIQGFGTFEVKKKLERISINPA 64

Query: 69 TNQEVKIDPRRVVVFKASSILKKR 92
          T Q + I P+ V+ +K S  LK++
Sbjct: 65 TQQRMLIPPKLVLTYKPSVTLKEK 88


>gi|310657656|ref|YP_003935377.1| hu, DNA-binding transcriptional regulator subunit beta
          [Clostridium sticklandii DSM 519]
 gi|308824434|emb|CBH20472.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Clostridium sticklandii]
          Length = 102

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  ++++ G+++KD+   + +    + ++ V GE +++  F TF  +++ +R G
Sbjct: 1  MNKAELVAKMAEKSGMTKKDTEVALNSFMASVEEALVAGEKVQLVGFGTFETRERAAREG 60

Query: 65 RNLQ-TNQEVKIDPRRVVVFKASSILKKRI 93
          RN +   +++KI   +  VFKA   LK+++
Sbjct: 61 RNPRDPEKKIKIPASKAPVFKAGKGLKEKV 90


>gi|114564684|ref|YP_752198.1| histone family protein DNA-binding protein [Shewanella
          frigidimarina NCIMB 400]
 gi|114335977|gb|ABI73359.1| histone family protein DNA-binding protein [Shewanella
          frigidimarina NCIMB 400]
          Length = 90

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  I++   L++ ++ R + +    + ++   G+ I I  F +F   Q+ +R G
Sbjct: 1  MNKSELIAKIAENAELTKAEAGRALKSFEEAVTEAMKNGDKISIVGFGSFETTQRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I    V  FKA   LK
Sbjct: 61 RNPQTGKEIQIAAATVPKFKAGKTLK 86


>gi|323485131|ref|ZP_08090483.1| hypothetical protein HMPREF9474_02234 [Clostridium symbiosum
          WAL-14163]
 gi|323694024|ref|ZP_08108208.1| histone family protein DNA-binding protein [Clostridium symbiosum
          WAL-14673]
 gi|323401561|gb|EGA93907.1| hypothetical protein HMPREF9474_02234 [Clostridium symbiosum
          WAL-14163]
 gi|323501960|gb|EGB17838.1| histone family protein DNA-binding protein [Clostridium symbiosum
          WAL-14673]
          Length = 92

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  LV S+S + GL+ + S + +  L N I      G  +++  F  F V  +  R+ 
Sbjct: 1  MNKRQLVDSMSAKSGLTTRQSEKALNGLMNVIHTELSSGGNVQLVGFGVFRVADRKDRIA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + +KI  R+  VF+A S LK
Sbjct: 61 RNPQTGEAMKIKGRKAPVFRAGSTLK 86


>gi|256419984|ref|YP_003120637.1| histone family protein DNA-binding protein [Chitinophaga pinensis
          DSM 2588]
 gi|256034892|gb|ACU58436.1| histone family protein DNA-binding protein [Chitinophaga pinensis
          DSM 2588]
          Length = 95

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 47/80 (58%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          ++DL+ +I+++ G+ + D    +  +F E+ ++   GE I I  F +F  K++ +++GRN
Sbjct: 3  KADLINNIAEKTGIPKVDVLVTLEAMFKEVKEALANGEHIYIRGFGSFITKKRAAKIGRN 62

Query: 67 LQTNQEVKIDPRRVVVFKAS 86
          ++ N  V+I    +  FK S
Sbjct: 63 IKKNVAVEIPEHFIPAFKPS 82


>gi|229182102|ref|ZP_04309394.1| DNA-binding protein HU 1 [Bacillus cereus 172560W]
 gi|228601353|gb|EEK58882.1| DNA-binding protein HU 1 [Bacillus cereus 172560W]
          Length = 93

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 43/71 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          I +++L K ++++  L +KD      T+ + I  +   GE ++I  F TF V+++ +R G
Sbjct: 4  INKTELTKVVAEKTELIQKDPVAATQTVLDTITSALANGEKVQILGFGTFEVRERSARTG 63

Query: 65 RNLQTNQEVKI 75
          RN QT +E++I
Sbjct: 64 RNPQTGEEMQI 74


>gi|217970426|ref|YP_002355660.1| histone family protein DNA-binding protein [Thauera sp. MZ1T]
 gi|217507753|gb|ACK54764.1| histone family protein DNA-binding protein [Thauera sp. MZ1T]
          Length = 90

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV SI+++ G+++ D+ R +      + ++  + E + +  F +F+V ++ +R G
Sbjct: 1  MNKQELVASIAEKAGMTKADAARALDATVAAVTEALRQDETVTLVGFGSFYVGERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + +KI   +V  F+A   LK
Sbjct: 61 RNPRTGKNIKIKAAKVPKFRAGKGLK 86


>gi|56550597|ref|YP_161663.1| DNA-binding protein HU-beta [Cupriavidus metallidurans CH34]
 gi|56410303|emb|CAI30185.1| hypothetical DNA-binding protein HU-beta NS1 [Cupriavidus
           metallidurans CH34]
          Length = 158

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 5   ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+ ++++   GL++  + + +    + I ++  RGE + +  F TF   ++G R+
Sbjct: 15  MTKSELIDAVARGVDGLTKTKAEQVLNATLDAIVEAVGRGETLSLIGFGTFSKGERGERM 74

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILK 90
            RN +T +E++++  + V FKA    K
Sbjct: 75  ARNPRTGEEIRVEAAKTVKFKAGQRFK 101


>gi|1573405|gb|AAC22089.1| DNA-binding protein HU-alpha (hupA) [Haemophilus influenzae Rd
           KW20]
          Length = 136

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 48/91 (52%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           K + ++DL+ +I+    L++K +   +    + I  S   GE +++  F TF V ++ +R
Sbjct: 45  KFMNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAAR 104

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            GRN QT  E++I   +V  F +   LK  I
Sbjct: 105 TGRNPQTGAEIQIAASKVPAFVSGKALKDAI 135


>gi|228969379|ref|ZP_04130226.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str.
          T04001]
 gi|228790341|gb|EEM38081.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str.
          T04001]
          Length = 90

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K ++++  L++K++      + + I  +    E ++I  F TF V+++ +R G
Sbjct: 1  MNKTELTKVVAEKAELTQKEAAAATQAVLDTITTALANEEKVQILRFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I   +   FKA   LK
Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELK 86


>gi|256375007|ref|YP_003098667.1| histone family protein DNA-binding protein [Actinosynnema mirum
          DSM 43827]
 gi|255919310|gb|ACU34821.1| histone family protein DNA-binding protein [Actinosynnema mirum
          DSM 43827]
          Length = 90

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++   + +  +TR +  + + I  +  +G+ + ++ F +F VK++ +R G
Sbjct: 1  MNKAELVSAIAEGADVEKAVATRALDAVLDSITKALAQGDDVVLTGFGSFTVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I   + V FK    LK  +
Sbjct: 61 RNPQTGEAIEIAASKAVGFKVGKALKDAV 89


>gi|134034140|sp|Q1RK52|HLP_RICBR RecName: Full=Histone-like DNA-binding protein
          Length = 94

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 1/93 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+  +   ++ E G S+      V  +F  I D A + + + + +F +F VK K SR 
Sbjct: 2  TITKEKIAFMLNAELGFSKSLCEEVVNAVFTNILDIA-KEQKLILKNFGSFEVKHKNSRP 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          G N  T  ++ I+P+ ++ F  S+ LK  I ++
Sbjct: 61 GINFHTKSQITIEPKNILRFVPSAKLKALINEN 93


>gi|323144209|ref|ZP_08078844.1| DNA-binding protein HU-beta [Succinatimonas hippei YIT 12066]
 gi|322416050|gb|EFY06749.1| DNA-binding protein HU-beta [Succinatimonas hippei YIT 12066]
          Length = 92

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+K  GLS   S R +  +   + ++   G+ +++  F TF + ++ SR G
Sbjct: 1  MNKSELIEQIAKRSGLSLAGSRRALDAVLASVSEALSEGDRVQLVGFGTFKITERNSREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + ++I   +   F A + LKK +
Sbjct: 61 RNPKTGEVIQIPASKTPSFTAGAELKKAV 89


>gi|309389063|gb|ADO76943.1| bacterial nucleoid protein Hbs [Halanaerobium praevalens DSM
          2228]
          Length = 99

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 57/97 (58%), Gaps = 8/97 (8%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVT----TLFNEICDSAVRGE----AIKISSFATFHV 56
          +T+++L+  ++++ G+++KD+   V     T+ N +   A + E     +++  F TF V
Sbjct: 1  MTKNELIDVVAEKTGVTKKDTGEVVNETIDTIMNYLKSEAKKDEDNRDNVQLIGFGTFEV 60

Query: 57 KQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          K + +R GRN QT +E++I  R+V VF++    K+ +
Sbjct: 61 KDRSARKGRNPQTGEELQIPARKVPVFRSGKSFKETV 97


>gi|294139097|ref|YP_003555075.1| HU family DNA-binding protein [Shewanella violacea DSS12]
 gi|293325566|dbj|BAJ00297.1| DNA-binding protein, HU family [Shewanella violacea DSS12]
          Length = 91

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  I++   L++ ++ R + +    I ++   G+ I I  F +F    + +R G
Sbjct: 1  MNKTELVAKIAENADLTKAEAARALKSFEETITETLKSGDKISIVGFGSFETTNRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT QE++I    V  FKA   LK
Sbjct: 61 RNPQTGQEIQIPAATVPKFKAGKTLK 86


>gi|167768371|ref|ZP_02440424.1| hypothetical protein CLOSS21_02928 [Clostridium sp. SS2/1]
 gi|317497690|ref|ZP_07956005.1| bacterial DNA-binding protein [Lachnospiraceae bacterium
          5_1_63FAA]
 gi|167709895|gb|EDS20474.1| hypothetical protein CLOSS21_02928 [Clostridium sp. SS2/1]
 gi|291560344|emb|CBL39144.1| Bacterial nucleoid DNA-binding protein [butyrate-producing
          bacterium SSC/2]
 gi|316895024|gb|EFV17191.1| bacterial DNA-binding protein [Lachnospiraceae bacterium
          5_1_63FAA]
          Length = 91

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+K+  LS+KD+ + +    + + +   +GE I++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAIAKKTELSKKDAEKALKAFTDVVAEELKKGEKIQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN ++ + + I   +   FKA   LK
Sbjct: 61 RNPRSGEVMHIAASKAPKFKAGKALK 86


>gi|212633423|ref|YP_002309948.1| histone-like DNA-binding protein [Shewanella piezotolerans WP3]
 gi|212554907|gb|ACJ27361.1| Histone-like bacterial DNA-binding protein [Shewanella
          piezotolerans WP3]
          Length = 90

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  +++   L++ ++ R + +    + ++   GE I I  F +F   ++ +R G
Sbjct: 1  MNKTELVAKMAESAELTKAEAARALKSFEETVAEAMKNGEKISIVGFGSFETSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I    V  FKA   LK
Sbjct: 61 RNPQTGKEIQIPAATVPKFKAGKTLK 86


>gi|315499364|ref|YP_004088168.1| integration host factor, beta subunit [Asticcacaulis excentricus
          CB 48]
 gi|315417376|gb|ADU14017.1| integration host factor, beta subunit [Asticcacaulis excentricus
          CB 48]
          Length = 98

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ ++ E+  +++KD  R V  +   + ++  +G  +++  F  F V+ + +RV
Sbjct: 1  MLKSELIERLASEYPHMTQKDVERIVNLILESMIETLEKGGRVELRGFGAFSVRSRPARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  + V  FK+   L++R+
Sbjct: 61 GRNPRTGEAVSVPAKHVPFFKSGKELRERL 90


>gi|322387987|ref|ZP_08061594.1| DNA-binding protein HU [Streptococcus infantis ATCC 700779]
 gi|322392079|ref|ZP_08065541.1| DNA-binding protein HU [Streptococcus peroris ATCC 700780]
 gi|321141260|gb|EFX36758.1| DNA-binding protein HU [Streptococcus infantis ATCC 700779]
 gi|321144979|gb|EFX40378.1| DNA-binding protein HU [Streptococcus peroris ATCC 700780]
          Length = 91

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F  + +    GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVDAVFAAVTEFLSAGEKVQLIGFGNFEVRKRAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT +E+KI   +V  FKA   LK+ +
Sbjct: 64 PQTGKEIKIKASKVPAFKAGKALKEAV 90


>gi|158425340|ref|YP_001526632.1| integration host factor subunit beta [Azorhizobium caulinodans
          ORS 571]
 gi|172048041|sp|A8IN83|IHFB_AZOC5 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|158332229|dbj|BAF89714.1| integration host factor beta subunit [Azorhizobium caulinodans
          ORS 571]
          Length = 94

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  + ++I D+  +G+ +++  F  F VKQ+ +R 
Sbjct: 1  MIKSELVQKIAEANPHLYQRDVENIVNAILDQIVDALAQGDRVELRGFGAFSVKQREART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++V +  + V  FK    +++R+
Sbjct: 61 GRNPRTGKQVDVSSKVVPYFKTGKEMRERL 90


>gi|217973689|ref|YP_002358440.1| histone family protein DNA-binding protein [Shewanella baltica
          OS223]
 gi|217498824|gb|ACK47017.1| histone family protein DNA-binding protein [Shewanella baltica
          OS223]
          Length = 91

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L++ I+ E   S+  +   V  +  +I  +   GE I +  F TF ++   ++ G
Sbjct: 1  MNKAQLIQRIAAELNASQASTKPVVEQILQQIHVALSEGEKIFLPQFGTFELRYHVAKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++ID      FKAS+ LK++I
Sbjct: 61 RNPQTGEAIEIDGYNQPSFKASTALKQQI 89


>gi|317153210|ref|YP_004121258.1| histone family protein DNA-binding protein [Desulfovibrio
          aespoeensis Aspo-2]
 gi|316943461|gb|ADU62512.1| histone family protein DNA-binding protein [Desulfovibrio
          aespoeensis Aspo-2]
          Length = 90

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  I+++  L++ ++ R +      +  + V    + ++ F TF V+Q+ +RVG
Sbjct: 1  MTKAELVVKIAEKANLTKANAERALNAFLESVEGNLVSEGKLTLTGFGTFVVEQRKARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  ++KI   +VV F+   +LK  I
Sbjct: 61 RNPRTGADIKIPATKVVKFRPGKLLKDAI 89


>gi|330831142|ref|YP_004394094.1| integration host factor subunit beta [Aeromonas veronii B565]
 gi|328806278|gb|AEB51477.1| Integration host factor, beta subunit [Aeromonas veronii B565]
          Length = 90

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV +I+ +  LS+  +   +  + N I  S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVTHRAGRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I    V  F A   LK  +
Sbjct: 61 RNPQTGKEIQIAAANVPSFVAGKALKDAV 89


>gi|239831002|ref|ZP_04679331.1| integration host factor, beta subunit [Ochrobactrum intermedium LMG
           3301]
 gi|239823269|gb|EEQ94837.1| integration host factor, beta subunit [Ochrobactrum intermedium LMG
           3301]
          Length = 120

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 3   KTITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           K + +S+LV+ I S+   L ++D    V  +F+EI ++   G  +++  F  F VK + +
Sbjct: 25  KAVIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPA 84

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN +T + V ++ + V  FK    L+ R+
Sbjct: 85  RSGRNPRTGETVDVEEKWVPFFKTGKELRDRL 116


>gi|120437894|ref|YP_863580.1| histone-like DNA-binding protein [Gramella forsetii KT0803]
 gi|117580044|emb|CAL68513.1| histone-like bacterial DNA-binding protein [Gramella forsetii
          KT0803]
          Length = 96

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 46/85 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V +IS++ G+ + D    + +  +E+  S   G+ + +  F +F VK +  + G
Sbjct: 1  MTKADIVANISEKLGMEKGDVQATIESFMDEVKTSLESGDNVYLRGFGSFVVKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  +KI    +  FK + I 
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKIF 85


>gi|28198389|ref|NP_778703.1| histone-like protein [Xylella fastidiosa Temecula1]
 gi|182681031|ref|YP_001829191.1| histone family protein DNA-binding protein [Xylella fastidiosa
          M23]
 gi|32129475|sp|Q87E48|DBH_XYLFT RecName: Full=DNA-binding protein HU
 gi|28056459|gb|AAO28352.1| histone-like protein [Xylella fastidiosa Temecula1]
 gi|182631141|gb|ACB91917.1| histone family protein DNA-binding protein [Xylella fastidiosa
          M23]
 gi|307579499|gb|ADN63468.1| histone family protein DNA-binding protein [Xylella fastidiosa
          subsp. fastidiosa GB514]
          Length = 94

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++    LS+ ++ R +  + NEI ++   G+++ +  F TF V+Q+  R G
Sbjct: 1  MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKEGDSVTLVGFGTFQVRQRAERPG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I       FK    LK  +
Sbjct: 61 RNPKTGEPIMIAASNNPSFKPGKALKDAV 89


>gi|68249030|ref|YP_248142.1| DNA-binding protein HU [Haemophilus influenzae 86-028NP]
 gi|68057229|gb|AAX87482.1| DNA-binding protein HU [Haemophilus influenzae 86-028NP]
          Length = 136

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 48/91 (52%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           K + ++DL+ +I+    L++K +   +    + I  S   GE +++  F TF V ++ +R
Sbjct: 45  KFMNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAAR 104

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            GRN QT  E++I   +V  F +   LK  I
Sbjct: 105 TGRNPQTGAEIQIAASKVPAFVSGKALKDAI 135


>gi|298293882|ref|YP_003695821.1| integration host factor subunit beta [Starkeya novella DSM 506]
 gi|296930393|gb|ADH91202.1| integration host factor, beta subunit [Starkeya novella DSM 506]
          Length = 97

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  + +EI  +  RG+ +++  F  F VK + +R 
Sbjct: 1  MIKSELVQRIAEANPHLYQRDVENIVNAILDEIVTALARGDRVELRGFGAFSVKSRPART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +D + V  FK    +++R+
Sbjct: 61 GRNPRTGAHVAVDGKAVPYFKTGKEMRERL 90


>gi|283784266|ref|YP_003364131.1| DNA-binding protein HU-beta [Citrobacter rodentium ICC168]
 gi|282947720|emb|CBG87275.1| DNA-binding protein HU-beta [Citrobacter rodentium ICC168]
          Length = 95

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + +S   G+ + +  F TF VK++ +R G
Sbjct: 6  VNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFSVKERAARTG 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+ I   +V  F+A   LK
Sbjct: 66 RNPQTGKEITIAAAKVPGFRAGKALK 91


>gi|146344069|ref|YP_001201925.1| putative DNA-binding protein HU [Pseudomonas fluorescens SBW25]
 gi|146187881|emb|CAM96210.1| putative DNA-binding protein Hu [Pseudomonas fluorescens SBW25]
          Length = 92

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+ V +++++ GL++ D+ R V  +   I D+  +G+A+    F  F VKQ   R G
Sbjct: 3  LNKSEFVDAVAEKSGLTKADTQRAVDAVLETITDTLRKGDAVSFVGFGNFSVKQTAERQG 62

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T   + I   +   F A   LK  I
Sbjct: 63 RNPSTGAPITIAAAKKPHFAAGKSLKDAI 91


>gi|119774364|ref|YP_927104.1| HU family DNA-binding protein [Shewanella amazonensis SB2B]
 gi|119766864|gb|ABL99434.1| DNA-binding protein, HU family [Shewanella amazonensis SB2B]
          Length = 90

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + +    + +    G  I +  F TF V+++  R G
Sbjct: 1  MNKSELIEKIASGADISKAAAGRALDSFIAAVTEGLKDGGKISLVGFGTFEVRERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN Q+ +E+KI   ++  FKA   LK
Sbjct: 61 RNPQSGKEIKIPAAKIPAFKAGKALK 86


>gi|126173989|ref|YP_001050138.1| histone family protein DNA-binding protein [Shewanella baltica
          OS155]
 gi|153000280|ref|YP_001365961.1| histone family protein DNA-binding protein [Shewanella baltica
          OS185]
 gi|160874914|ref|YP_001554230.1| histone family protein DNA-binding protein [Shewanella baltica
          OS195]
 gi|125997194|gb|ABN61269.1| histone family protein DNA-binding protein [Shewanella baltica
          OS155]
 gi|151364898|gb|ABS07898.1| histone family protein DNA-binding protein [Shewanella baltica
          OS185]
 gi|160860436|gb|ABX48970.1| histone family protein DNA-binding protein [Shewanella baltica
          OS195]
 gi|315267151|gb|ADT94004.1| histone family protein DNA-binding protein [Shewanella baltica
          OS678]
          Length = 91

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L++ I+ E   S+  +   V  +  +I  +   GE I +  F TF ++   ++ G
Sbjct: 1  MNKAQLIQRIAAELNASQASTKPVVEQILQQIHVALSEGEKIFLPQFGTFELRYHVAKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++ID      FKAS+ LK++I
Sbjct: 61 RNPQTGEAIEIDGYNQPSFKASTALKQQI 89


>gi|330814759|ref|YP_004362934.1| histone family protein DNA-binding protein [Burkholderia gladioli
          BSR3]
 gi|327374751|gb|AEA66102.1| histone family protein DNA-binding protein [Burkholderia gladioli
          BSR3]
          Length = 92

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++   G+S+ D+ + V  + + I ++  RGE++++  F  F   Q+ +R G
Sbjct: 1  MNKQELIDAVAASVGVSKTDAGKTVQAVLDVITEAVGRGESVQLIGFGAFSQGQRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN  T  E+ I     V F A    K
Sbjct: 61 RNPSTGAEIAIPAANTVKFTAGKPFK 86


>gi|322385064|ref|ZP_08058714.1| DNA-binding protein HU [Streptococcus cristatus ATCC 51100]
 gi|321270974|gb|EFX53884.1| DNA-binding protein HU [Streptococcus cristatus ATCC 51100]
          Length = 91

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F  + +   +GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E+ I   +V  FKA   LK
Sbjct: 64 PQTGKEITIAASKVPAFKAGKALK 87


>gi|257469647|ref|ZP_05633739.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
 gi|317063883|ref|ZP_07928368.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
 gi|313689559|gb|EFS26394.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
          Length = 91

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+ D  K++  K   +S+ +S R V  +  EI +    G+ +    +  F V QK  R+
Sbjct: 1  MTKKDFAKALFEKGIFVSKAESERKVDAILTEIEEVLKSGDELNFIGWGKFEVVQKAERM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSIL 89
          GRN +T +E+KI+ ++ V FKA   L
Sbjct: 61 GRNPKTGEEIKIEAKKTVKFKAGKTL 86


>gi|30249908|ref|NP_841978.1| histone-like DNA-binding protein [Nitrosomonas europaea ATCC
          19718]
 gi|81722152|sp|Q82TD7|IHFB_NITEU RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|30180945|emb|CAD85872.1| Bacterial histone-like DNA-binding protein [Nitrosomonas europaea
          ATCC 19718]
          Length = 105

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  +++ F  L  KD+   V  + + +  S  RGE I+I  F +F +  + SRV
Sbjct: 1  MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLSRGERIEIRGFGSFDLNYRPSRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V +  + V  FKA   +++ I
Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKKMRELI 90


>gi|114321434|ref|YP_743117.1| histone family protein DNA-binding protein [Alkalilimnicola
          ehrlichii MLHE-1]
 gi|114227828|gb|ABI57627.1| histone family protein DNA-binding protein [Alkalilimnicola
          ehrlichii MLHE-1]
          Length = 90

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++++++   +S+  ++R V ++   + ++   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSELIEAVAQSADISKAAASRAVDSMVECVTNALKEGDQVTLVGFGTFQVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I   +V  FKA   LK  +
Sbjct: 61 RNPRTGETINIAASKVPSFKAGKALKDAV 89


>gi|259909249|ref|YP_002649605.1| HopD, DNA-binding protein HU-beta (Synonym HupB) [Erwinia
          pyrifoliae Ep1/96]
 gi|224964871|emb|CAX56393.1| HopD, DNA-binding protein HU-beta (Synonym HupB) [Erwinia
          pyrifoliae Ep1/96]
 gi|283479300|emb|CAY75216.1| transcriptional regulator HU subunit beta [Erwinia pyrifoliae DSM
          12163]
          Length = 90

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L++ I+ +  +S+    R +    + +  S   GE + + +F TF V+++  R G
Sbjct: 1  MNKSQLIEKIAADADVSKASVGRILEAFIDTVTKSLQVGEEVALLNFGTFSVRERAERPG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I  R+V  F+A   L++ +
Sbjct: 61 RNPQTGKEITIAARKVAGFRAGKELREAV 89


>gi|91214902|ref|ZP_01251875.1| DNA-binding protein HU-beta (NS1) (HU-1) [Psychroflexus torquis
          ATCC 700755]
 gi|91187329|gb|EAS73699.1| DNA-binding protein HU-beta (NS1) (HU-1) [Psychroflexus torquis
          ATCC 700755]
          Length = 90

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 55/89 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++ G+++ ++ + + +    +  +  +G+ + +  F ++ V ++ +R G
Sbjct: 1  MNKTNLIDAMAEDAGVTKAEAKKALESFLENVEGALKKGDRVSLVGFGSWSVSKRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + +KI  + VV FKA S L+K +
Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGSDLQKAV 89


>gi|56707752|ref|YP_169648.1| histone-like protein HU form B [Francisella tularensis subsp.
          tularensis SCHU S4]
 gi|89256252|ref|YP_513614.1| histone-like protein HU form B [Francisella tularensis subsp.
          holarctica LVS]
 gi|110670223|ref|YP_666780.1| histone-like protein HU form B [Francisella tularensis subsp.
          tularensis FSC198]
 gi|115314709|ref|YP_763432.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          holarctica OSU18]
 gi|134302066|ref|YP_001122035.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          tularensis WY96-3418]
 gi|156502313|ref|YP_001428378.1| DNA-binding protein HU [Francisella tularensis subsp. holarctica
          FTNF002-00]
 gi|187931474|ref|YP_001891458.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          mediasiatica FSC147]
 gi|224456822|ref|ZP_03665295.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          tularensis MA00-2987]
 gi|254367591|ref|ZP_04983612.1| histone-like protein hu form B [Francisella tularensis subsp.
          holarctica 257]
 gi|254369241|ref|ZP_04985253.1| hypothetical protein FTAG_00194 [Francisella tularensis subsp.
          holarctica FSC022]
 gi|254370256|ref|ZP_04986261.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          tularensis FSC033]
 gi|254874565|ref|ZP_05247275.1| DNA-binding protein [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|290953592|ref|ZP_06558213.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          holarctica URFT1]
 gi|295313093|ref|ZP_06803783.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          holarctica URFT1]
 gi|56604244|emb|CAG45260.1| Histone-like protein HU form B [Francisella tularensis subsp.
          tularensis SCHU S4]
 gi|89144083|emb|CAJ79334.1| Histone-like protein HU form B [Francisella tularensis subsp.
          holarctica LVS]
 gi|110320556|emb|CAL08643.1| Histone-like protein HU form B [Francisella tularensis subsp.
          tularensis FSC198]
 gi|115129608|gb|ABI82795.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          holarctica OSU18]
 gi|134049843|gb|ABO46914.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          tularensis WY96-3418]
 gi|134253402|gb|EBA52496.1| histone-like protein hu form B [Francisella tularensis subsp.
          holarctica 257]
 gi|151568499|gb|EDN34153.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          tularensis FSC033]
 gi|156252916|gb|ABU61422.1| DNA-binding protein HU [Francisella tularensis subsp. holarctica
          FTNF002-00]
 gi|157122191|gb|EDO66331.1| hypothetical protein FTAG_00194 [Francisella tularensis subsp.
          holarctica FSC022]
 gi|187712383|gb|ACD30680.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          mediasiatica FSC147]
 gi|254840564|gb|EET19000.1| DNA-binding protein [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|282158923|gb|ADA78314.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          tularensis NE061598]
          Length = 90

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV +I+KE  ++++ ++  +      +  +   G+++ +  F TF VK++  R G
Sbjct: 1  MNKSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSPREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + +KI   +V  FKAS  LK  +
Sbjct: 61 RNPKTGETIKIPASKVPSFKASKGLKDAV 89


>gi|326799514|ref|YP_004317333.1| histone family protein DNA-binding protein [Sphingobacterium sp.
           21]
 gi|326550278|gb|ADZ78663.1| histone family protein DNA-binding protein [Sphingobacterium sp.
           21]
          Length = 113

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 52/90 (57%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+ ++DL+  I+ + G+++  + + ++++ N +  +  +GE++ +  F TF V Q+ +R 
Sbjct: 17  TMNKADLITKIAADAGITKVQAEKALSSITNSVTTTLKKGESVSLIGFGTFTVGQRAARS 76

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN  T   +KI   +V  F+    L++ +
Sbjct: 77  GRNPNTGAVIKIKATKVPKFRPGKSLREAV 106


>gi|283954472|ref|ZP_06371992.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 414]
 gi|283794089|gb|EFC32838.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 414]
          Length = 98

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+T     + + I D   +G++I    F TF  +++ +R  
Sbjct: 1  MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R   T + +K+   RVV FK    LK+ +
Sbjct: 61 RVPSTGKTIKVPATRVVKFKVGKNLKEAV 89


>gi|149372186|ref|ZP_01891456.1| DNA-binding protein HU-beta (NS1) (HU-1) [unidentified
          eubacterium SCB49]
 gi|149354953|gb|EDM43515.1| DNA-binding protein HU-beta (NS1) (HU-1) [unidentified
          eubacterium SCB49]
          Length = 90

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+ +++++ G+++  + + + +    +  S  +G  + +  F ++ V ++ +R G
Sbjct: 1  MNKSDLIDAMAEDAGVTKAAAKKALESFLGNVEGSLKKGNRVSLVGFGSWSVTKRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + +KI  + VV FKA S L+  +
Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGSDLQSSV 89


>gi|319944338|ref|ZP_08018612.1| DNA-binding protein HU-beta [Lautropia mirabilis ATCC 51599]
 gi|319742299|gb|EFV94712.1| DNA-binding protein HU-beta [Lautropia mirabilis ATCC 51599]
          Length = 93

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +IS E  +S+  + R +T+  N I  +   G+ + +  F TFH  ++ SR G
Sbjct: 1  MNKSELIDTISSEADISKAAAERALTSAMNAIMKAVAEGDRVTLVGFGTFHASKRASRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N +T ++++I    V  F   +  K
Sbjct: 61 LNPRTGEKIEIAAANVPKFTPGAAFK 86


>gi|109899438|ref|YP_662693.1| histone-like DNA-binding protein [Pseudoalteromonas atlantica
          T6c]
 gi|332305577|ref|YP_004433428.1| histone family protein DNA-binding protein [Glaciecola
          agarilytica 4H-3-7+YE-5]
 gi|109701719|gb|ABG41639.1| histone-like DNA-binding protein [Pseudoalteromonas atlantica
          T6c]
 gi|332172906|gb|AEE22160.1| histone family protein DNA-binding protein [Glaciecola
          agarilytica 4H-3-7+YE-5]
          Length = 90

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  S R +  L + I  +   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDQIAASADISKAASGRALDALTDAITAALKEGDQVALVGFGTFSVRERAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + ++I   +V  FKA   LK
Sbjct: 61 RNPQTGETIQISAAKVPSFKAGKALK 86


>gi|253998814|ref|YP_003050877.1| integration host factor subunit beta [Methylovorus sp. SIP3-4]
 gi|313200901|ref|YP_004039559.1| integration host factor subunit beta [Methylovorus sp. MP688]
 gi|253985493|gb|ACT50350.1| integration host factor, beta subunit [Methylovorus sp. SIP3-4]
 gi|312440217|gb|ADQ84323.1| integration host factor, beta subunit [Methylovorus sp. MP688]
          Length = 94

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ +++  F  L  KD+   V  + + + D+   GE I+I  F +F +  +  R+
Sbjct: 1  MTKSELIANLAARFPQLVVKDAELSVKAIIDSMADNLASGERIEIRGFGSFSLNYRPPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  +V++  + V  FKA   L++R+
Sbjct: 61 GRNPKTGSKVQVPEKYVPHFKAGKELRERV 90


>gi|197284030|ref|YP_002149902.1| DNA-binding protein HU-beta [Proteus mirabilis HI4320]
 gi|194681517|emb|CAR40401.1| DNA-binding protein HU-beta [Proteus mirabilis HI4320]
          Length = 91

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+    +++  + R V  +   I +S  +G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLIDKIAANADITKAAAGRVVDAMVASITESLQKGDDVALVGFGTFTVRDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  F+A   LK  +
Sbjct: 61 RNPQTGKEIQIAAAKVPAFRAGKGLKDAV 89


>gi|313890818|ref|ZP_07824443.1| DNA-binding protein HU-beta [Streptococcus pseudoporcinus SPIN
          20026]
 gi|313120919|gb|EFR44033.1| DNA-binding protein HU-beta [Streptococcus pseudoporcinus SPIN
          20026]
          Length = 91

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 46/85 (54%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  I      GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATDLTKKDSAAAVDAVFAAIEGFLAEGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90
          N QT  E++I   +V  FKA   LK
Sbjct: 63 NPQTGAEIEIAASKVPAFKAGKALK 87


>gi|53715702|ref|YP_101694.1| DNA-binding protein HU-beta [Bacteroides fragilis YCH46]
 gi|60683640|ref|YP_213784.1| putative histone-like DNA-binding protein HU3 [Bacteroides
          fragilis NCTC 9343]
 gi|253566484|ref|ZP_04843937.1| DNA-binding protein HU-beta [Bacteroides sp. 3_2_5]
 gi|265767353|ref|ZP_06095019.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16]
 gi|52218567|dbj|BAD51160.1| DNA-binding protein HU-beta [Bacteroides fragilis YCH46]
 gi|60495074|emb|CAH09893.1| putative histone-like DNA-binding protein HU3 [Bacteroides
          fragilis NCTC 9343]
 gi|251944656|gb|EES85131.1| DNA-binding protein HU-beta [Bacteroides sp. 3_2_5]
 gi|263252658|gb|EEZ24170.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16]
 gi|301165152|emb|CBW24722.1| putative histone-like DNA-binding protein HU3 [Bacteroides
          fragilis 638R]
          Length = 90

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ E GLS+ DS + +   F+ +  +   G+ I +  F TF V ++ +R+G
Sbjct: 1  MNKAELINAMAAESGLSKVDSKKALEAFFSSVTKALSAGDKISLVGFGTFSVAERSARMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T + ++I  ++V  FK  + L   I
Sbjct: 61 INPSTKKAIEIPAKKVAKFKPGAELTDAI 89


>gi|332524208|ref|ZP_08400434.1| nucleoid protein Hbs [Rubrivivax benzoatilyticus JA2]
 gi|332107543|gb|EGJ08767.1| nucleoid protein Hbs [Rubrivivax benzoatilyticus JA2]
          Length = 90

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  I+++  LS+  +TR +      +  +   G+++ I+ F TF V ++ +R G
Sbjct: 1  MNKTDLIAHIAQQADLSKASATRALEAALEGVQTALKNGDSVAIAGFGTFEVSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + +++   +V  F+    LK
Sbjct: 61 RNPRTGEAIEVKAAKVPKFRPGKALK 86


>gi|53713715|ref|YP_099707.1| DNA-binding protein HU [Bacteroides fragilis YCH46]
 gi|60681986|ref|YP_212130.1| putative histone-like DNA-binding protein HU2 [Bacteroides
          fragilis NCTC 9343]
 gi|265764039|ref|ZP_06092607.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_16]
 gi|52216580|dbj|BAD49173.1| DNA-binding protein HU [Bacteroides fragilis YCH46]
 gi|60493420|emb|CAH08206.1| putative histone-like DNA-binding protein HU2 [Bacteroides
          fragilis NCTC 9343]
 gi|263256647|gb|EEZ27993.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_16]
 gi|301163424|emb|CBW22975.1| putative histone-like DNA-binding protein HU2 [Bacteroides
          fragilis 638R]
          Length = 96

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 42/82 (51%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          +    +S+  G + K ++  +T+L ++I        AI I  F TF VK+K  R+  N  
Sbjct: 5  EFTSELSRRLGYNTKYTSELITSLLSDITQELQESNAIGIQGFGTFEVKKKAERIVINPV 64

Query: 69 TNQEVKIDPRRVVVFKASSILK 90
          T   + + P+ V+ FK S ILK
Sbjct: 65 TKLRLLVPPKLVLAFKPSPILK 86


>gi|163787183|ref|ZP_02181630.1| DNA-binding protein HU [Flavobacteriales bacterium ALC-1]
 gi|159877071|gb|EDP71128.1| DNA-binding protein HU [Flavobacteriales bacterium ALC-1]
          Length = 96

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 43/85 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  IS + G+ + D    V T   E+  S   G+ + +  F +F +K +  + G
Sbjct: 1  MTKADLVAKISDKLGIEKGDVQATVETFMEEVKTSLESGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  +KI    +  FK + + 
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVF 85


>gi|126668934|ref|ZP_01739875.1| Bacterial nucleoid DNA-binding protein [Marinobacter sp. ELB17]
 gi|126626597|gb|EAZ97253.1| Bacterial nucleoid DNA-binding protein [Marinobacter sp. ELB17]
          Length = 90

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I++   +S+  + R +  +   I  +  + + + +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAESADISKAAAGRALDAMTTSITSALKKDDQVTLIGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I   +V  FKA   LK  +
Sbjct: 61 RNPQTGAEIQIKASKVPGFKAGKALKDAV 89


>gi|325284684|ref|YP_004264147.1| histone family protein DNA-binding protein [Deinococcus
          proteolyticus MRP]
 gi|324316173|gb|ADY27287.1| histone family protein DNA-binding protein [Deinococcus
          proteolyticus MRP]
          Length = 89

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S LV+ ++++ GL++K +   V+T+ + + ++   G+A+ +    T  VK+  +R G
Sbjct: 1  MNKSQLVEKVAEQTGLTKKQADEAVSTMLDTVVEALRGGQAVGLPGLGTLSVKETAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
              T ++++I   + V FK ++ LK  +
Sbjct: 61 VKPGTTEKIQIPAGKKVAFKVATTLKGNL 89


>gi|323697932|ref|ZP_08109844.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          ND132]
 gi|323457864|gb|EGB13729.1| histone family protein DNA-binding protein [Desulfovibrio
          desulfuricans ND132]
          Length = 90

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  I+++  L++ ++ R +      +  + V    + ++ F TF V+ + SRVG
Sbjct: 1  MTKAELVVKIAEKANLTKANAERALNAFLETVESTLVSEGKLTLTGFGTFMVELRKSRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T  E+KI   +VV F+   ILK
Sbjct: 61 RNPRTGLELKIPETKVVKFRPGKILK 86


>gi|78485543|ref|YP_391468.1| integration host factor, beta subunit [Thiomicrospira crunogena
          XCL-2]
 gi|78363829|gb|ABB41794.1| integration host factor, beta subunit [Thiomicrospira crunogena
          XCL-2]
          Length = 108

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I+ K+   S+KD    +  + + + D+   G+ I+I  F +F +  + +R+
Sbjct: 8  MTKSELIELIARKQTQFSQKDVELAINQILDSMIDTLSEGDRIEIRGFGSFSLHHRKARL 67

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++V++  +RV  FK    L+ R+
Sbjct: 68 GRNPKTGEKVELSEKRVPHFKPGKSLRDRV 97


>gi|329122306|ref|ZP_08250894.1| DNA-binding protein HU [Haemophilus aegyptius ATCC 11116]
 gi|327473867|gb|EGF19284.1| DNA-binding protein HU [Haemophilus aegyptius ATCC 11116]
          Length = 90

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+    L++K +   +    + I  S   GE +++  F TF V ++ +R G
Sbjct: 1  MNKTNLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I   +V  F +   LK  I
Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAI 89


>gi|304440463|ref|ZP_07400352.1| DNA-binding protein HU [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371215|gb|EFM24832.1| DNA-binding protein HU [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 92

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+++  L++KD+   +      + D+   GE +++  F TF V+++ +R G
Sbjct: 1  MNKAELIANIAEKSNLTKKDAEMALNGFLTTVQDALASGEKVQLVGFGTFEVRERKAREG 60

Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93
          RN +  +EV KI   +  VF++   LK+ +
Sbjct: 61 RNPRNPEEVIKIPASKAPVFRSGKALKEAV 90


>gi|304411460|ref|ZP_07393074.1| histone family protein DNA-binding protein [Shewanella baltica
          OS183]
 gi|307305218|ref|ZP_07584966.1| histone family protein DNA-binding protein [Shewanella baltica
          BA175]
 gi|304350315|gb|EFM14719.1| histone family protein DNA-binding protein [Shewanella baltica
          OS183]
 gi|306911521|gb|EFN41946.1| histone family protein DNA-binding protein [Shewanella baltica
          BA175]
          Length = 91

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L++ I+ E   S+  +   V  +  +I  +   GE I +  F TF ++   ++ G
Sbjct: 1  MNKAQLIQRIAAELNASQSSTKPVVEQILQQIHVALSEGEKIFLPQFGTFELRYHVAKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++ID      FKAS+ LK++I
Sbjct: 61 RNPQTGEAIEIDGYNQPSFKASTALKQQI 89


>gi|170693720|ref|ZP_02884878.1| integration host factor, beta subunit [Burkholderia graminis
          C4D1M]
 gi|209519345|ref|ZP_03268144.1| integration host factor, beta subunit [Burkholderia sp. H160]
 gi|295677276|ref|YP_003605800.1| integration host factor, beta subunit [Burkholderia sp. CCGE1002]
 gi|307730619|ref|YP_003907843.1| integration host factor subunit beta [Burkholderia sp. CCGE1003]
 gi|323526953|ref|YP_004229106.1| integration host factor subunit beta [Burkholderia sp. CCGE1001]
 gi|170141502|gb|EDT09672.1| integration host factor, beta subunit [Burkholderia graminis
          C4D1M]
 gi|209500229|gb|EEA00286.1| integration host factor, beta subunit [Burkholderia sp. H160]
 gi|295437119|gb|ADG16289.1| integration host factor, beta subunit [Burkholderia sp. CCGE1002]
 gi|307585154|gb|ADN58552.1| integration host factor, beta subunit [Burkholderia sp. CCGE1003]
 gi|323383955|gb|ADX56046.1| integration host factor, beta subunit [Burkholderia sp. CCGE1001]
          Length = 107

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV  ++  F  L  KD+   V T+ + + ++  +G  I+I  F +F + ++ SRV
Sbjct: 1  MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSEALAKGHRIEIRGFGSFGLNRRPSRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V +  + V  FK    L++R+
Sbjct: 61 GRNPKSGEKVLVPEKYVPHFKPGKELRERV 90


>gi|169832956|ref|YP_001694534.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae Hungary19A-6]
 gi|168995458|gb|ACA36070.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae Hungary19A-6]
          Length = 91

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F  + D    GE +++  F  F V+++  R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVEAVFVAVADYLAAGEKVQLIGFGNFEVRERAERKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E+ I   +V  FKA   LK
Sbjct: 64 PQTGKEMTIAASKVPAFKAGKALK 87


>gi|15900980|ref|NP_345584.1| DNA-binding protein HU [Streptococcus pneumoniae TIGR4]
 gi|15903064|ref|NP_358614.1| DNA-binding protein HU [Streptococcus pneumoniae R6]
 gi|111658012|ref|ZP_01408716.1| hypothetical protein SpneT_02000809 [Streptococcus pneumoniae
          TIGR4]
 gi|116516205|ref|YP_816472.1| DNA-binding protein HU [Streptococcus pneumoniae D39]
 gi|148985086|ref|ZP_01818329.1| DNA-binding protein HU [Streptococcus pneumoniae SP3-BS71]
 gi|148989157|ref|ZP_01820547.1| DNA-binding protein HU [Streptococcus pneumoniae SP6-BS73]
 gi|148994562|ref|ZP_01823721.1| DNA-binding protein HU [Streptococcus pneumoniae SP9-BS68]
 gi|148998383|ref|ZP_01825825.1| DNA-binding protein HU [Streptococcus pneumoniae SP11-BS70]
 gi|149003768|ref|ZP_01828600.1| DNA-binding protein HU [Streptococcus pneumoniae SP14-BS69]
 gi|149006210|ref|ZP_01829922.1| DNA-binding protein HU [Streptococcus pneumoniae SP18-BS74]
 gi|149012891|ref|ZP_01833804.1| DNA-binding protein HU [Streptococcus pneumoniae SP19-BS75]
 gi|149024915|ref|ZP_01836316.1| DNA-binding protein HU [Streptococcus pneumoniae SP23-BS72]
 gi|168483191|ref|ZP_02708143.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae CDC1873-00]
 gi|168486472|ref|ZP_02710980.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae CDC1087-00]
 gi|168488958|ref|ZP_02713157.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae SP195]
 gi|168492008|ref|ZP_02716151.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae CDC0288-04]
 gi|168493057|ref|ZP_02717200.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae CDC3059-06]
 gi|168576162|ref|ZP_02722056.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae MLV-016]
 gi|182684138|ref|YP_001835885.1| DNA-binding protein HU [Streptococcus pneumoniae CGSP14]
 gi|194397873|ref|YP_002037741.1| DNA-binding protein HU [Streptococcus pneumoniae G54]
 gi|221231850|ref|YP_002511002.1| DNA-binding protein HU [Streptococcus pneumoniae ATCC 700669]
 gi|225854609|ref|YP_002736121.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae JJA]
 gi|225856753|ref|YP_002738264.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae P1031]
 gi|225858923|ref|YP_002740433.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae 70585]
 gi|225861076|ref|YP_002742585.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae Taiwan19F-14]
 gi|237650781|ref|ZP_04525033.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae CCRI 1974]
 gi|237822369|ref|ZP_04598214.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229872|ref|ZP_06963553.1| DNA-binding protein HU [Streptococcus pneumoniae str. Canada
          MDR_19F]
 gi|298254158|ref|ZP_06977744.1| DNA-binding protein HU [Streptococcus pneumoniae str. Canada
          MDR_19A]
 gi|298502870|ref|YP_003724810.1| DNA-binding protein HU [Streptococcus pneumoniae TCH8431/19A]
 gi|303254179|ref|ZP_07340291.1| DNA-binding protein HU [Streptococcus pneumoniae BS455]
 gi|303259776|ref|ZP_07345751.1| DNA-binding protein HU [Streptococcus pneumoniae SP-BS293]
 gi|303262951|ref|ZP_07348886.1| DNA-binding protein HU [Streptococcus pneumoniae SP14-BS292]
 gi|303264913|ref|ZP_07350829.1| DNA-binding protein HU [Streptococcus pneumoniae BS397]
 gi|303266894|ref|ZP_07352772.1| DNA-binding protein HU [Streptococcus pneumoniae BS457]
 gi|303268930|ref|ZP_07354715.1| DNA-binding protein HU [Streptococcus pneumoniae BS458]
 gi|307067705|ref|YP_003876671.1| nucleoid DNA-binding protein [Streptococcus pneumoniae AP200]
 gi|307127356|ref|YP_003879387.1| DNA-binding protein HU 1 [Streptococcus pneumoniae 670-6B]
 gi|14972589|gb|AAK75224.1| DNA-binding protein HU [Streptococcus pneumoniae TIGR4]
 gi|15458637|gb|AAK99824.1| Histone-like DNA-binding protein [Streptococcus pneumoniae R6]
 gi|116076781|gb|ABJ54501.1| DNA-binding protein HU [Streptococcus pneumoniae D39]
 gi|147755780|gb|EDK62825.1| DNA-binding protein HU [Streptococcus pneumoniae SP11-BS70]
 gi|147758214|gb|EDK65216.1| DNA-binding protein HU [Streptococcus pneumoniae SP14-BS69]
 gi|147761987|gb|EDK68949.1| DNA-binding protein HU [Streptococcus pneumoniae SP18-BS74]
 gi|147763180|gb|EDK70120.1| DNA-binding protein HU [Streptococcus pneumoniae SP19-BS75]
 gi|147922784|gb|EDK73901.1| DNA-binding protein HU [Streptococcus pneumoniae SP3-BS71]
 gi|147925380|gb|EDK76458.1| DNA-binding protein HU [Streptococcus pneumoniae SP6-BS73]
 gi|147927156|gb|EDK78193.1| DNA-binding protein HU [Streptococcus pneumoniae SP9-BS68]
 gi|147929538|gb|EDK80532.1| DNA-binding protein HU [Streptococcus pneumoniae SP23-BS72]
 gi|172043527|gb|EDT51573.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae CDC1873-00]
 gi|182629472|gb|ACB90420.1| DNA-binding protein HU [Streptococcus pneumoniae CGSP14]
 gi|183570502|gb|EDT91030.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae CDC1087-00]
 gi|183572358|gb|EDT92886.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae SP195]
 gi|183573808|gb|EDT94336.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae CDC0288-04]
 gi|183576766|gb|EDT97294.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae CDC3059-06]
 gi|183577917|gb|EDT98445.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae MLV-016]
 gi|194357540|gb|ACF55988.1| DNA-binding protein HU [Streptococcus pneumoniae G54]
 gi|220674310|emb|CAR68853.1| DNA-binding protein HU [Streptococcus pneumoniae ATCC 700669]
 gi|225721544|gb|ACO17398.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae 70585]
 gi|225723096|gb|ACO18949.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae JJA]
 gi|225724771|gb|ACO20623.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae P1031]
 gi|225727077|gb|ACO22928.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238465|gb|ADI69596.1| DNA-binding protein HU [Streptococcus pneumoniae TCH8431/19A]
 gi|301794226|emb|CBW36646.1| DNA-binding protein HU [Streptococcus pneumoniae INV104]
 gi|301800078|emb|CBW32675.1| DNA-binding protein HU [Streptococcus pneumoniae OXC141]
 gi|301801998|emb|CBW34727.1| DNA-binding protein HU [Streptococcus pneumoniae INV200]
 gi|302598850|gb|EFL65884.1| DNA-binding protein HU [Streptococcus pneumoniae BS455]
 gi|302635928|gb|EFL66428.1| DNA-binding protein HU [Streptococcus pneumoniae SP14-BS292]
 gi|302638981|gb|EFL69441.1| DNA-binding protein HU [Streptococcus pneumoniae SP-BS293]
 gi|302641548|gb|EFL71910.1| DNA-binding protein HU [Streptococcus pneumoniae BS458]
 gi|302643592|gb|EFL73861.1| DNA-binding protein HU [Streptococcus pneumoniae BS457]
 gi|302645601|gb|EFL75832.1| DNA-binding protein HU [Streptococcus pneumoniae BS397]
 gi|306409242|gb|ADM84669.1| Bacterial nucleoid DNA-binding protein [Streptococcus pneumoniae
          AP200]
 gi|306484418|gb|ADM91287.1| DNA-binding protein HU 1 [Streptococcus pneumoniae 670-6B]
 gi|315419703|gb|ADU15821.1| histone-like protein [Streptococcus pseudopneumoniae]
 gi|327389329|gb|EGE87674.1| bacterial DNA-binding family protein [Streptococcus pneumoniae
          GA04375]
 gi|332073475|gb|EGI83954.1| bacterial DNA-binding family protein [Streptococcus pneumoniae
          GA17570]
 gi|332075067|gb|EGI85538.1| bacterial DNA-binding family protein [Streptococcus pneumoniae
          GA17545]
 gi|332075447|gb|EGI85916.1| bacterial DNA-binding family protein [Streptococcus pneumoniae
          GA41301]
 gi|332200509|gb|EGJ14581.1| bacterial DNA-binding family protein [Streptococcus pneumoniae
          GA41317]
 gi|332201601|gb|EGJ15671.1| bacterial DNA-binding family protein [Streptococcus pneumoniae
          GA47368]
 gi|332202970|gb|EGJ17038.1| bacterial DNA-binding family protein [Streptococcus pneumoniae
          GA47901]
          Length = 91

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F  + D    GE +++  F  F V+++  R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVEAVFAAVADYLAAGEKVQLIGFGNFEVRERAERKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E+ I   +V  FKA   LK
Sbjct: 64 PQTGKEMTIAASKVPAFKAGKALK 87


>gi|257074499|ref|YP_003162896.1| integration host factor, beta subunit [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
 gi|257048720|gb|ACV37905.1| integration host factor, beta subunit [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
          Length = 95

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRS+L+  I ++   L+ KD    V  +F  + ++   GE I+I  F +F +  +  R+
Sbjct: 1  MTRSELIAQITARSAALTVKDVETAVKAIFEGMTETLANGERIEIRGFGSFRLAYRPPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN  T   V +  + V  FKA   L  R+  D
Sbjct: 61 GRNPMTGDTVPVPAKAVPHFKAGRELAARVNSD 93


>gi|237809330|ref|YP_002893770.1| histone family protein DNA-binding protein [Tolumonas auensis DSM
          9187]
 gi|237501591|gb|ACQ94184.1| histone family protein DNA-binding protein [Tolumonas auensis DSM
          9187]
          Length = 91

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+ +  +S+  +   +  +   I  S   G+ +++  F TF V  + SR G
Sbjct: 1  MNKTELVDAIAAKADMSKAQAKVALEQILETITQSLKEGDPVQLVGFGTFKVNHRASRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT QE+ I    V  F A   LK  +
Sbjct: 61 RNPQTGQEITIAASNVPTFVAGKALKDAV 89


>gi|254423790|ref|ZP_05037508.1| DNA-binding protein HU [Synechococcus sp. PCC 7335]
 gi|196191279|gb|EDX86243.1| DNA-binding protein HU [Synechococcus sp. PCC 7335]
          Length = 92

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++  +S+KD+   +T + + I +S  +G+ + +  F +F  + + +R G
Sbjct: 1  MNKAELIDMVAEKADVSKKDADVVLTAVIDSIMESVAKGDKVSLVGFGSFEPRDRKARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + +KI    V  F A    K+ + D
Sbjct: 61 RNPQTGETIKIPATTVPAFSAGKGFKQLVAD 91


>gi|281357086|ref|ZP_06243576.1| histone family protein DNA-binding protein [Victivallis vadensis
          ATCC BAA-548]
 gi|281316644|gb|EFB00668.1| histone family protein DNA-binding protein [Victivallis vadensis
          ATCC BAA-548]
          Length = 99

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ DLV  I++E G  + D    V    + I    + G  I++ +F  F +K + SR G
Sbjct: 1  MTKRDLVVKIARETGFIQNDVAEVVQKTLDYIAQDLIEGHTIELRNFGVFEIKVRKSRKG 60

Query: 65 RNL-QTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  Q   EV I  R VV F+A   LK+ +
Sbjct: 61 RNPNQPKNEVIIPERAVVKFRAGKELKEAV 90


>gi|29346322|ref|NP_809825.1| DNA-binding protein HU [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568257|ref|ZP_04845668.1| DNA-binding protein HU [Bacteroides sp. 1_1_6]
 gi|298385676|ref|ZP_06995234.1| HimA protein [Bacteroides sp. 1_1_14]
 gi|29338217|gb|AAO76019.1| DNA-binding protein HU [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842330|gb|EES70410.1| DNA-binding protein HU [Bacteroides sp. 1_1_6]
 gi|298261817|gb|EFI04683.1| HimA protein [Bacteroides sp. 1_1_14]
          Length = 90

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 45/84 (53%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          +    ++   G + KD++  +++L +++      G AI I  F +F VK+K  R+  N  
Sbjct: 5  EFTSELADRLGYTIKDTSELISSLLSDMTQELEDGNAIAIQGFGSFEVKKKAERISINPS 64

Query: 69 TNQEVKIDPRRVVVFKASSILKKR 92
          T Q + + P+ V+ ++ S+ LK +
Sbjct: 65 TKQRMLVPPKLVLTYRPSNTLKDK 88


>gi|95930236|ref|ZP_01312974.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM
          684]
 gi|95133699|gb|EAT15360.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM
          684]
          Length = 91

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++++S E  L+ K +   V  +F+ +    V+G  I+I  F +F VK   S  G
Sbjct: 1  MNKSELIEALSLEKDLTYKRAEEIVNLMFDSMTQELVKGGRIEIRGFGSFVVKDYKSYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + +++  +++  FK    L++R+
Sbjct: 61 RNPKTGEAIQVKTKKLPFFKVGKELRERV 89


>gi|315186666|gb|EFU20425.1| histone family protein DNA-binding protein [Spirochaeta
          thermophila DSM 6578]
          Length = 102

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 56/95 (58%), Gaps = 1/95 (1%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK-QKG 60
          ++ +T++ +V++IS+   LS+KD    + + F+E+  + V G+ +++  F TF ++ +KG
Sbjct: 5  TEKLTKAQIVENISQHCDLSKKDIQFVIDSFFSEVKRALVEGKTVELRGFGTFEIRVRKG 64

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
              RN +T + VK++   V VF+    LK  + +
Sbjct: 65 RERARNPKTGEIVKVEDHGVAVFRPGKELKDSVWN 99


>gi|299135036|ref|ZP_07028227.1| histone family protein DNA-binding protein [Afipia sp. 1NLS2]
 gi|298590013|gb|EFI50217.1| histone family protein DNA-binding protein [Afipia sp. 1NLS2]
          Length = 99

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T   L  ++++E  LS+K +   +T +  +I     +GE I+I       V+++ +R+
Sbjct: 10 TVTLKHLAAALAEEHELSKKTAEAILTDMVTKITKHLKKGERIRIVGLGILQVRKRAARM 69

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN  T + + I   + V F+A+  LK+ +
Sbjct: 70 GRNPATGEAIHIKASKKVAFRAAKELKEAV 99


>gi|254427198|ref|ZP_05040905.1| DNA-binding protein HU [Alcanivorax sp. DG881]
 gi|196193367|gb|EDX88326.1| DNA-binding protein HU [Alcanivorax sp. DG881]
          Length = 85

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          ++ +I+    +S+ D+ R + +    +  +  +G+++ +  F TF VK++ +R GRN QT
Sbjct: 1  MIDAIAASADISKADAGRALDSTLEAVTGALKKGDSVSLVGFGTFAVKRREARDGRNPQT 60

Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93
           Q +KI    V  FKA   LK  +
Sbjct: 61 GQTIKIAAANVPGFKAGKALKDAV 84


>gi|163782099|ref|ZP_02177098.1| DNA binding protein HU [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882631|gb|EDP76136.1| DNA binding protein HU [Hydrogenivirga sp. 128-5-R1-1]
          Length = 100

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 39/60 (65%)

Query: 27 RFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKAS 86
          + V+ +F  I ++   GE ++IS F TF VK +  ++GRN +T +EV +  R+V+VFK S
Sbjct: 27 QIVSEVFEIIEETLKNGEKVQISGFGTFLVKTRKGKIGRNPRTGEEVPVPDRKVIVFKPS 86


>gi|149192496|ref|ZP_01870681.1| DNA-binding protein HU-beta [Vibrio shilonii AK1]
 gi|148833669|gb|EDL50721.1| DNA-binding protein HU-beta [Vibrio shilonii AK1]
          Length = 90

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I++   LS+  + R +      +  +   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVEKIAENADLSKASAGRALDAFIEAVSTTLEEGDQVALVGFGTFSVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E++I   +V  FKA   LK
Sbjct: 61 RNPKTGEEIQISEAKVPAFKAGKALK 86


>gi|299133339|ref|ZP_07026534.1| integration host factor, beta subunit [Afipia sp. 1NLS2]
 gi|298593476|gb|EFI53676.1| integration host factor, beta subunit [Afipia sp. 1NLS2]
          Length = 103

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  +  EI  +  RG+ +++  F  F VK + +R 
Sbjct: 1  MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVSALSRGDRVELRGFGAFSVKHRPARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FK    +++R+
Sbjct: 61 GRNPRTGEHVPVEQKSVPFFKTGKEMRERL 90


>gi|15800170|ref|NP_286182.1| transcriptional regulator HU subunit beta [Escherichia coli
          O157:H7 EDL933]
 gi|15829748|ref|NP_308521.1| transcriptional regulator HU subunit beta [Escherichia coli
          O157:H7 str. Sakai]
 gi|16128425|ref|NP_414974.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli str. K-12 substr. MG1655]
 gi|24111824|ref|NP_706334.1| transcriptional regulator HU subunit beta [Shigella flexneri 2a
          str. 301]
 gi|26246451|ref|NP_752490.1| transcriptional regulator HU subunit beta [Escherichia coli
          CFT073]
 gi|30061942|ref|NP_836113.1| transcriptional regulator HU subunit beta [Shigella flexneri 2a
          str. 2457T]
 gi|74311015|ref|YP_309434.1| transcriptional regulator HU subunit beta [Shigella sonnei Ss046]
 gi|82542928|ref|YP_406875.1| transcriptional regulator HU subunit beta [Shigella boydii Sb227]
 gi|82775653|ref|YP_402000.1| transcriptional regulator HU subunit beta [Shigella dysenteriae
          Sd197]
 gi|89107310|ref|AP_001090.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli str. K-12 substr. W3110]
 gi|91209514|ref|YP_539500.1| transcriptional regulator HU subunit beta [Escherichia coli
          UTI89]
 gi|110640701|ref|YP_668429.1| transcriptional regulator HU subunit beta [Escherichia coli 536]
 gi|110804468|ref|YP_687988.1| transcriptional regulator HU subunit beta [Shigella flexneri 5
          str. 8401]
 gi|117622700|ref|YP_851613.1| transcriptional regulator HU subunit beta [Escherichia coli APEC
          O1]
 gi|157158595|ref|YP_001461627.1| transcriptional regulator HU subunit beta [Escherichia coli
          E24377A]
 gi|157159967|ref|YP_001457285.1| transcriptional regulator HU subunit beta [Escherichia coli HS]
 gi|168747884|ref|ZP_02772906.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4113]
 gi|168754545|ref|ZP_02779552.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4401]
 gi|168760405|ref|ZP_02785412.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4501]
 gi|168768395|ref|ZP_02793402.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4486]
 gi|168777136|ref|ZP_02802143.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4196]
 gi|168778933|ref|ZP_02803940.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4076]
 gi|168786291|ref|ZP_02811298.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC869]
 gi|168798004|ref|ZP_02823011.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC508]
 gi|170021187|ref|YP_001726141.1| transcriptional regulator HU subunit beta [Escherichia coli ATCC
          8739]
 gi|170080026|ref|YP_001729346.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli str. K-12 substr. DH10B]
 gi|170681712|ref|YP_001742584.1| transcriptional regulator HU subunit beta [Escherichia coli
          SMS-3-5]
 gi|170767837|ref|ZP_02902290.1| DNA-binding protein HU-beta [Escherichia albertii TW07627]
 gi|187732111|ref|YP_001879151.1| transcriptional regulator HU subunit beta [Shigella boydii CDC
          3083-94]
 gi|188494441|ref|ZP_03001711.1| DNA-binding protein HU-beta [Escherichia coli 53638]
 gi|191169609|ref|ZP_03031324.1| DNA-binding protein HU-beta [Escherichia coli B7A]
 gi|191173656|ref|ZP_03035180.1| DNA-binding protein HU-beta [Escherichia coli F11]
 gi|193064118|ref|ZP_03045202.1| DNA-binding protein HU-beta [Escherichia coli E22]
 gi|193067526|ref|ZP_03048493.1| DNA-binding protein HU-beta [Escherichia coli E110019]
 gi|194429030|ref|ZP_03061562.1| DNA-binding protein HU-beta [Escherichia coli B171]
 gi|194435314|ref|ZP_03067526.1| DNA-binding protein HU-beta [Shigella dysenteriae 1012]
 gi|194437413|ref|ZP_03069510.1| DNA-binding protein HU-beta [Escherichia coli 101-1]
 gi|208807585|ref|ZP_03249922.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4206]
 gi|208815532|ref|ZP_03256711.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4045]
 gi|208823271|ref|ZP_03263589.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4042]
 gi|209399224|ref|YP_002269087.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4115]
 gi|209917657|ref|YP_002291741.1| transcriptional regulator HU subunit beta [Escherichia coli SE11]
 gi|215485521|ref|YP_002327952.1| transcriptional regulator HU subunit beta [Escherichia coli
          O127:H6 str. E2348/69]
 gi|217324840|ref|ZP_03440924.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          TW14588]
 gi|218549892|ref|YP_002383683.1| transcriptional regulator HU subunit beta [Escherichia fergusonii
          ATCC 35469]
 gi|218553007|ref|YP_002385920.1| transcriptional regulator HU subunit beta [Escherichia coli IAI1]
 gi|218557350|ref|YP_002390263.1| transcriptional regulator HU subunit beta [Escherichia coli S88]
 gi|218688304|ref|YP_002396516.1| transcriptional regulator HU subunit beta [Escherichia coli ED1a]
 gi|218693903|ref|YP_002401570.1| transcriptional regulator HU subunit beta [Escherichia coli
          55989]
 gi|218698648|ref|YP_002406277.1| transcriptional regulator HU subunit beta [Escherichia coli
          IAI39]
 gi|218703724|ref|YP_002411243.1| transcriptional regulator HU subunit beta [Escherichia coli
          UMN026]
 gi|227884549|ref|ZP_04002354.1| DNA-binding protein HU [Escherichia coli 83972]
 gi|237707565|ref|ZP_04538046.1| transcriptional regulator HU subunit beta [Escherichia sp.
          3_2_53FAA]
 gi|238899728|ref|YP_002925524.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli BW2952]
 gi|253774569|ref|YP_003037400.1| transcriptional regulator HU subunit beta [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|254160510|ref|YP_003043618.1| transcriptional regulator HU subunit beta [Escherichia coli B
          str. REL606]
 gi|254791624|ref|YP_003076461.1| transcriptional regulator HU subunit beta [Escherichia coli
          O157:H7 str. TW14359]
 gi|256020412|ref|ZP_05434277.1| transcriptional regulator HU subunit beta [Shigella sp. D9]
 gi|256023941|ref|ZP_05437806.1| transcriptional regulator HU subunit beta [Escherichia sp.
          4_1_40B]
 gi|260842641|ref|YP_003220419.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli O103:H2 str. 12009]
 gi|260853663|ref|YP_003227554.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli O26:H11 str. 11368]
 gi|260866601|ref|YP_003233003.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli O111:H- str. 11128]
 gi|261223923|ref|ZP_05938204.1| transcriptional regulator HU subunit beta [Escherichia coli
          O157:H7 str. FRIK2000]
 gi|261256363|ref|ZP_05948896.1| transcriptional regulator HU subunit beta [Escherichia coli
          O157:H7 str. FRIK966]
 gi|291281347|ref|YP_003498165.1| DNA-binding protein HU-beta [Escherichia coli O55:H7 str. CB9615]
 gi|293403561|ref|ZP_06647652.1| transcriptional regulator HU subunit alpha [Escherichia coli
          FVEC1412]
 gi|293408590|ref|ZP_06652429.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293413695|ref|ZP_06656344.1| DNA-binding protein HU-beta [Escherichia coli B185]
 gi|293418511|ref|ZP_06660946.1| transcriptional regulator HU subunit alpha [Escherichia coli
          B088]
 gi|298379173|ref|ZP_06989054.1| DNA-binding protein HU-beta [Escherichia coli FVEC1302]
 gi|300818228|ref|ZP_07098439.1| DNA-binding protein HU [Escherichia coli MS 107-1]
 gi|300820314|ref|ZP_07100466.1| DNA-binding protein HU [Escherichia coli MS 119-7]
 gi|300900511|ref|ZP_07118678.1| DNA-binding protein HU [Escherichia coli MS 198-1]
 gi|300903292|ref|ZP_07121220.1| DNA-binding protein HU [Escherichia coli MS 84-1]
 gi|300918177|ref|ZP_07134784.1| DNA-binding protein HU [Escherichia coli MS 115-1]
 gi|300924167|ref|ZP_07140159.1| DNA-binding protein HU [Escherichia coli MS 182-1]
 gi|300930257|ref|ZP_07145670.1| DNA-binding protein HU [Escherichia coli MS 187-1]
 gi|300937057|ref|ZP_07151923.1| DNA-binding protein HU [Escherichia coli MS 21-1]
 gi|300947907|ref|ZP_07162055.1| DNA-binding protein HU [Escherichia coli MS 116-1]
 gi|300958008|ref|ZP_07170172.1| DNA-binding protein HU [Escherichia coli MS 175-1]
 gi|300988005|ref|ZP_07178485.1| DNA-binding protein HU [Escherichia coli MS 45-1]
 gi|300997371|ref|ZP_07181711.1| DNA-binding protein HU [Escherichia coli MS 200-1]
 gi|301022566|ref|ZP_07186438.1| DNA-binding protein HU [Escherichia coli MS 69-1]
 gi|301025664|ref|ZP_07189182.1| DNA-binding protein HU [Escherichia coli MS 196-1]
 gi|301049647|ref|ZP_07196596.1| DNA-binding protein HU [Escherichia coli MS 185-1]
 gi|301301591|ref|ZP_07207726.1| DNA-binding protein HU [Escherichia coli MS 124-1]
 gi|301330693|ref|ZP_07223295.1| DNA-binding protein HU [Escherichia coli MS 78-1]
 gi|301647366|ref|ZP_07247178.1| DNA-binding protein HU [Escherichia coli MS 146-1]
 gi|306813092|ref|ZP_07447285.1| transcriptional regulator HU subunit beta [Escherichia coli
          NC101]
 gi|307137085|ref|ZP_07496441.1| transcriptional regulator HU subunit beta [Escherichia coli H736]
 gi|307312182|ref|ZP_07591818.1| histone family protein DNA-binding protein [Escherichia coli W]
 gi|309794827|ref|ZP_07689248.1| DNA-binding protein HU [Escherichia coli MS 145-7]
 gi|312964535|ref|ZP_07778791.1| DNA-binding protein HU-beta [Escherichia coli 2362-75]
 gi|312970537|ref|ZP_07784718.1| DNA-binding protein HU-beta [Escherichia coli 1827-70]
 gi|331640960|ref|ZP_08342095.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H736]
 gi|331645616|ref|ZP_08346720.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli M605]
 gi|331651378|ref|ZP_08352403.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli M718]
 gi|331656497|ref|ZP_08357459.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA206]
 gi|331661821|ref|ZP_08362744.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA143]
 gi|331666796|ref|ZP_08367670.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA271]
 gi|331676112|ref|ZP_08376824.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H591]
 gi|331681835|ref|ZP_08382468.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H299]
 gi|332281591|ref|ZP_08394004.1| transcriptional regulator HU subunit beta [Shigella sp. D9]
 gi|82581654|sp|P0ACF6|DBHB_ECO57 RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1;
          AltName: Full=NS1
 gi|82581655|sp|P0ACF5|DBHB_ECOL6 RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1;
          AltName: Full=NS1
 gi|82581656|sp|P0ACF4|DBHB_ECOLI RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1;
          AltName: Full=NS1
 gi|82581657|sp|P0ACF7|DBHB_SHIFL RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1;
          AltName: Full=NS1
 gi|134105079|pdb|2O97|B Chain B, Crystal Structure Of E. Coli Hu Heterodimer
 gi|12513302|gb|AAG54790.1|AE005223_5 DNA-binding protein HU-beta, NS1 (HU-1) [Escherichia coli O157:H7
          str. EDL933]
 gi|26106849|gb|AAN79034.1|AE016756_217 DNA-binding protein HU-beta [Escherichia coli CFT073]
 gi|581106|emb|CAA34539.1| unnamed protein product [Escherichia coli K-12]
 gi|1773124|gb|AAB40196.1| DNA-binding protein NS1 [Escherichia coli]
 gi|1786644|gb|AAC73543.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli str. K-12 substr. MG1655]
 gi|13359951|dbj|BAB33917.1| DNA-binding protein HU-1 [Escherichia coli O157:H7 str. Sakai]
 gi|24050616|gb|AAN42041.1| DNA-binding protein HU-beta, NS1 (HU-1) [Shigella flexneri 2a
          str. 301]
 gi|30040186|gb|AAP15919.1| DNA-binding protein HU-beta, NS1 (HU-1) [Shigella flexneri 2a
          str. 2457T]
 gi|73854492|gb|AAZ87199.1| DNA-binding protein HU-beta [Shigella sonnei Ss046]
 gi|81239801|gb|ABB60511.1| DNA-binding protein HU-beta [Shigella dysenteriae Sd197]
 gi|81244339|gb|ABB65047.1| DNA-binding protein HU-beta [Shigella boydii Sb227]
 gi|85674580|dbj|BAE76220.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli str. K12 substr. W3110]
 gi|91071088|gb|ABE05969.1| DNA-binding protein HU-beta, NS1 (HU-1) [Escherichia coli UTI89]
 gi|110342293|gb|ABG68530.1| DNA-binding protein HU-beta [Escherichia coli 536]
 gi|110614016|gb|ABF02683.1| DNA-binding protein HU-beta, NS1 (HU-1) [Shigella flexneri 5 str.
          8401]
 gi|115511824|gb|ABI99898.1| DNA-binding protein HU-beta, NS1 (HU-1) [Escherichia coli APEC
          O1]
 gi|157065647|gb|ABV04902.1| DNA-binding protein HU-beta [Escherichia coli HS]
 gi|157080625|gb|ABV20333.1| DNA-binding protein HU-beta [Escherichia coli E24377A]
 gi|169756115|gb|ACA78814.1| histone family protein DNA-binding protein [Escherichia coli ATCC
          8739]
 gi|169887861|gb|ACB01568.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli str. K-12 substr. DH10B]
 gi|170123325|gb|EDS92256.1| DNA-binding protein HU-beta [Escherichia albertii TW07627]
 gi|170519430|gb|ACB17608.1| DNA-binding protein HU-beta [Escherichia coli SMS-3-5]
 gi|187429103|gb|ACD08377.1| DNA-binding protein HU-beta [Shigella boydii CDC 3083-94]
 gi|187767567|gb|EDU31411.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4196]
 gi|188017725|gb|EDU55847.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4113]
 gi|188489640|gb|EDU64743.1| DNA-binding protein HU-beta [Escherichia coli 53638]
 gi|189002751|gb|EDU71737.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4076]
 gi|189357994|gb|EDU76413.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4401]
 gi|189362520|gb|EDU80939.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4486]
 gi|189369140|gb|EDU87556.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4501]
 gi|189373754|gb|EDU92170.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC869]
 gi|189379306|gb|EDU97722.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC508]
 gi|190900350|gb|EDV60184.1| DNA-binding protein HU-beta [Escherichia coli B7A]
 gi|190906014|gb|EDV65629.1| DNA-binding protein HU-beta [Escherichia coli F11]
 gi|192929147|gb|EDV82757.1| DNA-binding protein HU-beta [Escherichia coli E22]
 gi|192958938|gb|EDV89374.1| DNA-binding protein HU-beta [Escherichia coli E110019]
 gi|194412967|gb|EDX29257.1| DNA-binding protein HU-beta [Escherichia coli B171]
 gi|194416446|gb|EDX32603.1| DNA-binding protein HU-beta [Shigella dysenteriae 1012]
 gi|194423582|gb|EDX39572.1| DNA-binding protein HU-beta [Escherichia coli 101-1]
 gi|208727386|gb|EDZ76987.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4206]
 gi|208732180|gb|EDZ80868.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4045]
 gi|208737464|gb|EDZ85148.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4042]
 gi|209160624|gb|ACI38057.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4115]
 gi|209743824|gb|ACI70219.1| DNA-binding protein HU-1 [Escherichia coli]
 gi|209743826|gb|ACI70220.1| DNA-binding protein HU-1 [Escherichia coli]
 gi|209743828|gb|ACI70221.1| DNA-binding protein HU-1 [Escherichia coli]
 gi|209743830|gb|ACI70222.1| DNA-binding protein HU-1 [Escherichia coli]
 gi|209743832|gb|ACI70223.1| DNA-binding protein HU-1 [Escherichia coli]
 gi|209910916|dbj|BAG75990.1| DNA-binding protein HU-beta [Escherichia coli SE11]
 gi|215263593|emb|CAS07923.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli O127:H6 str. E2348/69]
 gi|217321061|gb|EEC29485.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          TW14588]
 gi|218350635|emb|CAU96327.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli 55989]
 gi|218357433|emb|CAQ90072.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia fergusonii ATCC 35469]
 gi|218359775|emb|CAQ97316.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli IAI1]
 gi|218364119|emb|CAR01784.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli S88]
 gi|218368634|emb|CAR16373.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli IAI39]
 gi|218425868|emb|CAR06674.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli ED1a]
 gi|218430821|emb|CAR11695.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli UMN026]
 gi|222032235|emb|CAP74974.1| DNA-binding protein HU-beta [Escherichia coli LF82]
 gi|226898775|gb|EEH85034.1| transcriptional regulator HU subunit beta [Escherichia sp.
          3_2_53FAA]
 gi|227838635|gb|EEJ49101.1| DNA-binding protein HU [Escherichia coli 83972]
 gi|238861438|gb|ACR63436.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli BW2952]
 gi|242376222|emb|CAQ30913.1| transcriptional dual regulator HU-beta, NS1 (HU-1), subunit of HU
          transcriptional dual regulator [Escherichia coli
          BL21(DE3)]
 gi|253325613|gb|ACT30215.1| histone family protein DNA-binding protein [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253972411|gb|ACT38082.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli B str. REL606]
 gi|253976621|gb|ACT42291.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli BL21(DE3)]
 gi|254591024|gb|ACT70385.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli O157:H7 str. TW14359]
 gi|257752312|dbj|BAI23814.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli O26:H11 str. 11368]
 gi|257757788|dbj|BAI29285.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli O103:H2 str. 12009]
 gi|257762957|dbj|BAI34452.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli O111:H- str. 11128]
 gi|260450373|gb|ACX40795.1| histone family protein DNA-binding protein [Escherichia coli DH1]
 gi|281177611|dbj|BAI53941.1| DNA-binding protein HU-beta [Escherichia coli SE15]
 gi|281599780|gb|ADA72764.1| DNA-binding protein HU-beta [Shigella flexneri 2002017]
 gi|284920250|emb|CBG33309.1| DNA-binding protein HU-beta [Escherichia coli 042]
 gi|290761220|gb|ADD55181.1| DNA-binding protein HU-beta [Escherichia coli O55:H7 str. CB9615]
 gi|291325039|gb|EFE64454.1| transcriptional regulator HU subunit alpha [Escherichia coli
          B088]
 gi|291429414|gb|EFF02434.1| transcriptional regulator HU subunit alpha [Escherichia coli
          FVEC1412]
 gi|291433753|gb|EFF06726.1| DNA-binding protein HU-beta [Escherichia coli B185]
 gi|291471768|gb|EFF14251.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294489973|gb|ADE88729.1| DNA-binding protein HU-beta [Escherichia coli IHE3034]
 gi|298280286|gb|EFI21790.1| DNA-binding protein HU-beta [Escherichia coli FVEC1302]
 gi|299880018|gb|EFI88229.1| DNA-binding protein HU [Escherichia coli MS 196-1]
 gi|300298584|gb|EFJ54969.1| DNA-binding protein HU [Escherichia coli MS 185-1]
 gi|300304190|gb|EFJ58710.1| DNA-binding protein HU [Escherichia coli MS 200-1]
 gi|300315275|gb|EFJ65059.1| DNA-binding protein HU [Escherichia coli MS 175-1]
 gi|300355992|gb|EFJ71862.1| DNA-binding protein HU [Escherichia coli MS 198-1]
 gi|300397447|gb|EFJ80985.1| DNA-binding protein HU [Escherichia coli MS 69-1]
 gi|300404587|gb|EFJ88125.1| DNA-binding protein HU [Escherichia coli MS 84-1]
 gi|300407557|gb|EFJ91095.1| DNA-binding protein HU [Escherichia coli MS 45-1]
 gi|300414628|gb|EFJ97938.1| DNA-binding protein HU [Escherichia coli MS 115-1]
 gi|300419620|gb|EFK02931.1| DNA-binding protein HU [Escherichia coli MS 182-1]
 gi|300452507|gb|EFK16127.1| DNA-binding protein HU [Escherichia coli MS 116-1]
 gi|300457888|gb|EFK21381.1| DNA-binding protein HU [Escherichia coli MS 21-1]
 gi|300461829|gb|EFK25322.1| DNA-binding protein HU [Escherichia coli MS 187-1]
 gi|300527099|gb|EFK48168.1| DNA-binding protein HU [Escherichia coli MS 119-7]
 gi|300529119|gb|EFK50181.1| DNA-binding protein HU [Escherichia coli MS 107-1]
 gi|300843088|gb|EFK70848.1| DNA-binding protein HU [Escherichia coli MS 124-1]
 gi|300843354|gb|EFK71114.1| DNA-binding protein HU [Escherichia coli MS 78-1]
 gi|301074511|gb|EFK89317.1| DNA-binding protein HU [Escherichia coli MS 146-1]
 gi|305853855|gb|EFM54294.1| transcriptional regulator HU subunit beta [Escherichia coli
          NC101]
 gi|306907684|gb|EFN38186.1| histone family protein DNA-binding protein [Escherichia coli W]
 gi|307552347|gb|ADN45122.1| DNA-binding protein HU [Escherichia coli ABU 83972]
 gi|307628090|gb|ADN72394.1| transcriptional regulator HU subunit beta [Escherichia coli
          UM146]
 gi|308121480|gb|EFO58742.1| DNA-binding protein HU [Escherichia coli MS 145-7]
 gi|309700701|emb|CBI99997.1| DNA-binding protein HU-beta [Escherichia coli ETEC H10407]
 gi|310337186|gb|EFQ02324.1| DNA-binding protein HU-beta [Escherichia coli 1827-70]
 gi|312290769|gb|EFR18646.1| DNA-binding protein HU-beta [Escherichia coli 2362-75]
 gi|312945018|gb|ADR25845.1| transcriptional regulator HU subunit beta [Escherichia coli
          O83:H1 str. NRG 857C]
 gi|313646933|gb|EFS11390.1| DNA-binding protein HU-beta [Shigella flexneri 2a str. 2457T]
 gi|315059720|gb|ADT74047.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli W]
 gi|315135122|dbj|BAJ42281.1| DNA-binding protein HU-beta [Escherichia coli DH1]
 gi|315256268|gb|EFU36236.1| DNA-binding protein HU [Escherichia coli MS 85-1]
 gi|315289842|gb|EFU49232.1| DNA-binding protein HU [Escherichia coli MS 110-3]
 gi|315294226|gb|EFU53577.1| DNA-binding protein HU [Escherichia coli MS 153-1]
 gi|315299564|gb|EFU58812.1| DNA-binding protein HU [Escherichia coli MS 16-3]
 gi|315616619|gb|EFU97236.1| DNA-binding protein HU-beta [Escherichia coli 3431]
 gi|320173740|gb|EFW48923.1| DNA-binding protein HU-beta [Shigella dysenteriae CDC 74-1112]
 gi|320178278|gb|EFW53252.1| DNA-binding protein HU-beta [Shigella boydii ATCC 9905]
 gi|320186070|gb|EFW60815.1| DNA-binding protein HU-beta [Shigella flexneri CDC 796-83]
 gi|320192856|gb|EFW67496.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC1212]
 gi|320197086|gb|EFW71705.1| DNA-binding protein HU-beta [Escherichia coli WV_060327]
 gi|320201684|gb|EFW76260.1| DNA-binding protein HU-beta [Escherichia coli EC4100B]
 gi|320638435|gb|EFX08149.1| transcriptional regulator HU subunit beta [Escherichia coli
          O157:H7 str. G5101]
 gi|320643816|gb|EFX12939.1| transcriptional regulator HU subunit beta [Escherichia coli
          O157:H- str. 493-89]
 gi|320649167|gb|EFX17745.1| transcriptional regulator HU subunit beta [Escherichia coli
          O157:H- str. H 2687]
 gi|320656060|gb|EFX23976.1| transcriptional regulator HU subunit beta [Escherichia coli
          O55:H7 str. 3256-97 TW 07815]
 gi|320661210|gb|EFX28641.1| transcriptional regulator HU subunit beta [Escherichia coli
          O55:H7 str. USDA 5905]
 gi|320665186|gb|EFX32279.1| transcriptional regulator HU subunit beta [Escherichia coli
          O157:H7 str. LSU-61]
 gi|323153477|gb|EFZ39731.1| DNA-binding protein HU-beta [Escherichia coli EPECa14]
 gi|323160449|gb|EFZ46397.1| DNA-binding protein HU-beta [Escherichia coli E128010]
 gi|323164241|gb|EFZ50048.1| DNA-binding protein HU-beta [Shigella sonnei 53G]
 gi|323170527|gb|EFZ56177.1| DNA-binding protein HU-beta [Escherichia coli LT-68]
 gi|323178291|gb|EFZ63869.1| DNA-binding protein HU-beta [Escherichia coli 1180]
 gi|323184729|gb|EFZ70100.1| DNA-binding protein HU-beta [Escherichia coli 1357]
 gi|323191360|gb|EFZ76623.1| DNA-binding protein HU-beta [Escherichia coli RN587/1]
 gi|323379715|gb|ADX51983.1| histone family protein DNA-binding protein [Escherichia coli
          KO11]
 gi|323938626|gb|EGB34875.1| bacterial DNA-binding protein [Escherichia coli E1520]
 gi|323943247|gb|EGB39403.1| DNA-binding protein [Escherichia coli E482]
 gi|323945346|gb|EGB41402.1| bacterial DNA-binding protein [Escherichia coli H120]
 gi|323952948|gb|EGB48816.1| DNA-binding protein [Escherichia coli H252]
 gi|323958633|gb|EGB54336.1| DNA-binding protein [Escherichia coli H263]
 gi|323963430|gb|EGB58992.1| DNA-binding protein [Escherichia coli H489]
 gi|323965127|gb|EGB60586.1| DNA-binding protein [Escherichia coli M863]
 gi|323972294|gb|EGB67504.1| DNA-binding protein [Escherichia coli TA007]
 gi|323976075|gb|EGB71168.1| DNA-binding protein [Escherichia coli TW10509]
 gi|324010071|gb|EGB79290.1| DNA-binding protein HU [Escherichia coli MS 57-2]
 gi|324010654|gb|EGB79873.1| DNA-binding protein HU [Escherichia coli MS 60-1]
 gi|324016699|gb|EGB85918.1| DNA-binding protein HU [Escherichia coli MS 117-3]
 gi|324114667|gb|EGC08635.1| DNA-binding protein [Escherichia fergusonii B253]
 gi|324116928|gb|EGC10841.1| DNA-binding protein [Escherichia coli E1167]
 gi|325498269|gb|EGC96128.1| transcriptional regulator HU subunit beta [Escherichia fergusonii
          ECD227]
 gi|326341204|gb|EGD64996.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. 1044]
 gi|326346021|gb|EGD69760.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. 1125]
 gi|327254768|gb|EGE66384.1| DNA-binding protein HU-beta [Escherichia coli STEC_7v]
 gi|330910234|gb|EGH38744.1| DNA-binding protein HU-beta [Escherichia coli AA86]
 gi|331037758|gb|EGI09978.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H736]
 gi|331045778|gb|EGI17904.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli M605]
 gi|331051119|gb|EGI23171.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli M718]
 gi|331054745|gb|EGI26754.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA206]
 gi|331060243|gb|EGI32207.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA143]
 gi|331066020|gb|EGI37904.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA271]
 gi|331076170|gb|EGI47452.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H591]
 gi|331081037|gb|EGI52202.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H299]
 gi|332085888|gb|EGI91052.1| DNA-binding protein HU-beta [Shigella dysenteriae 155-74]
 gi|332094596|gb|EGI99642.1| DNA-binding protein HU-beta [Shigella boydii 5216-82]
 gi|332098606|gb|EGJ03572.1| DNA-binding protein HU-beta [Shigella boydii 3594-74]
 gi|332103943|gb|EGJ07289.1| transcriptional regulator HU subunit beta [Shigella sp. D9]
 gi|332341804|gb|AEE55138.1| transcriptional regulator protein HU, subunit beta HupB
          [Escherichia coli UMNK88]
 gi|332761491|gb|EGJ91773.1| DNA-binding protein HU-beta [Shigella flexneri 2747-71]
 gi|332763739|gb|EGJ93977.1| DNA-binding protein HU-beta [Shigella flexneri K-671]
 gi|333007920|gb|EGK27396.1| DNA-binding protein HU-beta [Shigella flexneri K-218]
 gi|333008126|gb|EGK27601.1| DNA-binding protein HU-beta [Shigella flexneri VA-6]
 gi|333010901|gb|EGK30327.1| DNA-binding protein HU-beta [Shigella flexneri K-272]
 gi|333020703|gb|EGK39963.1| DNA-binding protein HU-beta [Shigella flexneri K-227]
 gi|333021963|gb|EGK41211.1| DNA-binding protein HU-beta [Shigella flexneri K-304]
          Length = 90

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + +S   G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F+A   LK  +
Sbjct: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89


>gi|269102460|ref|ZP_06155157.1| integration host factor alpha subunit [Photobacterium damselae
          subsp. damselae CIP 102761]
 gi|268162358|gb|EEZ40854.1| integration host factor alpha subunit [Photobacterium damselae
          subsp. damselae CIP 102761]
          Length = 72

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 36/65 (55%)

Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88
          +   F E+  +   GE +K+S F  F ++ K  R GRN +T +++ I  RRVV F+    
Sbjct: 1  MEVFFEEVRKALENGEQVKLSGFGNFDLRDKNERPGRNPKTGEDIPITARRVVTFRPGQK 60

Query: 89 LKKRI 93
          LK R+
Sbjct: 61 LKARV 65


>gi|157146943|ref|YP_001454262.1| transcriptional regulator HU subunit beta [Citrobacter koseri
          ATCC BAA-895]
 gi|237730417|ref|ZP_04560898.1| transcriptional regulator HU subunit beta [Citrobacter sp. 30_2]
 gi|283834241|ref|ZP_06353982.1| DNA-binding protein HU-beta [Citrobacter youngae ATCC 29220]
 gi|157084148|gb|ABV13826.1| hypothetical protein CKO_02720 [Citrobacter koseri ATCC BAA-895]
 gi|226905956|gb|EEH91874.1| transcriptional regulator HU subunit beta [Citrobacter sp. 30_2]
 gi|291069760|gb|EFE07869.1| DNA-binding protein HU-beta [Citrobacter youngae ATCC 29220]
          Length = 90

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + +S   G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F+A   LK  +
Sbjct: 61 RNPQTGKEITIAAAKVPGFRAGKALKDAV 89


>gi|150388012|ref|YP_001318061.1| histone family protein DNA-binding protein [Alkaliphilus
          metalliredigens QYMF]
 gi|149947874|gb|ABR46402.1| histone family protein DNA-binding protein [Alkaliphilus
          metalliredigens QYMF]
          Length = 92

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++++  L++KD+   + +    + ++ V G+ +++  F TF V+++  R G
Sbjct: 1  MNKADLVAKMAEKSELTKKDAELALNSFMESVEEALVDGDKVQLVGFGTFEVRERKPRQG 60

Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93
          RN +  ++V +I   +  VFKA   LK++I
Sbjct: 61 RNPRNPEQVIEIPASKAPVFKAGKTLKEKI 90


>gi|237709945|ref|ZP_04540426.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA]
 gi|229456038|gb|EEO61759.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA]
          Length = 90

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          + +  +S+  G + KD+++ V+++   +      G  I I  F TF VK+K  R+  N  
Sbjct: 5  EFISELSRRLGYTNKDTSQLVSSVIGVMTQELQDGNNIVIQGFGTFEVKKKLERISINPA 64

Query: 69 TNQEVKIDPRRVVVFKASSILKKR 92
          T Q + I P+ V+ +K S  LK++
Sbjct: 65 TQQRMLIPPKLVLTYKPSVTLKEK 88


>gi|116748869|ref|YP_845556.1| histone family protein DNA-binding protein [Syntrophobacter
          fumaroxidans MPOB]
 gi|116697933|gb|ABK17121.1| histone family protein DNA-binding protein [Syntrophobacter
          fumaroxidans MPOB]
          Length = 90

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  ++   G+++  + + +  L   +  +  +G+ I +  F TF V ++  R G
Sbjct: 1  MTKADLVIKMADGTGITKAAAEKALNNLIAAVSAALAKGDKITLVGFGTFDVAKRAKREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T Q + I   +VV FKA + L+  I
Sbjct: 61 RNPRTGQAITIPASKVVRFKAGNKLRDAI 89


>gi|120553956|ref|YP_958307.1| integration host factor subunit beta [Marinobacter aquaeolei VT8]
 gi|166918554|sp|A1TZF1|IHFB_MARAV RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|120323805|gb|ABM18120.1| integration host factor, beta subunit [Marinobacter aquaeolei
          VT8]
          Length = 98

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV+ I SK+  LS KD    V ++   +  S   G+ I+I  F +F +  + +R 
Sbjct: 1  MTKSELVELIASKQTQLSVKDVELAVKSIIEHMSQSLADGQRIEIRGFGSFSLHHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T   V++  + V  FK    L++++ D M+
Sbjct: 61 GRNPKTGDAVQLPAKFVPHFKPGKELREQVNDSMK 95


>gi|157963543|ref|YP_001503577.1| histone family protein DNA-binding protein [Shewanella pealeana
          ATCC 700345]
 gi|157848543|gb|ABV89042.1| histone family protein DNA-binding protein [Shewanella pealeana
          ATCC 700345]
          Length = 90

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  +++   L++ ++ R + +    + ++   G+ I I  F +F   Q+ +R G
Sbjct: 1  MNKTELVAKMAESAELTKAEAARALKSFEETVAEAMKNGDKISIVGFGSFETTQRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I    V  FKA   LK
Sbjct: 61 RNPQTGKEIQIPAATVPKFKAGKTLK 86


>gi|61658219|gb|AAX49386.1| DNA-binding protein HU [Aeromonas hydrophila]
          Length = 98

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV +I+ +  LS+  +   +  + N I  S   G A+++  F TF V  +  R G
Sbjct: 9  MNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGGAVQLVGFGTFKVNHRAGRTG 68

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I    V  F A   LK  +
Sbjct: 69 RNPQTGKEIQIAAANVPSFVAGKALKDAV 97


>gi|163846249|ref|YP_001634293.1| histone family protein DNA-binding protein [Chloroflexus
          aurantiacus J-10-fl]
 gi|222524004|ref|YP_002568474.1| histone family protein DNA-binding protein [Chloroflexus sp.
          Y-400-fl]
 gi|163667538|gb|ABY33904.1| histone family protein DNA-binding protein [Chloroflexus
          aurantiacus J-10-fl]
 gi|222447883|gb|ACM52149.1| histone family protein DNA-binding protein [Chloroflexus sp.
          Y-400-fl]
          Length = 91

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D +K++++   +S+K++   +      I ++  RGE + ++ F TF V+ + +R G
Sbjct: 1  MQKTDFIKAVAERAKVSQKETKLIIDAALEVITEALARGEKVTLTGFGTFEVRSRQAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N QT +++ I   +   F ASS LK+ +
Sbjct: 61 VNPQTREKMHIPATKTPGFSASSTLKEAV 89


>gi|297538803|ref|YP_003674572.1| integration host factor subunit beta [Methylotenera sp. 301]
 gi|297258150|gb|ADI29995.1| integration host factor, beta subunit [Methylotenera sp. 301]
          Length = 93

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  +++ F  L  KD+   V  + + + D+   GE I+I  F +F +  +  R+
Sbjct: 1  MTKSELITLLAERFPQLVVKDAELSVKAILDAMSDNLATGERIEIRGFGSFSLNYRPPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  +V++  + V  FKA   L++R+
Sbjct: 61 GRNPKTGSKVQVPEKHVPHFKAGKELRERV 90


>gi|302384103|ref|YP_003819926.1| histone family protein DNA-binding protein [Brevundimonas
          subvibrioides ATCC 15264]
 gi|302194731|gb|ADL02303.1| histone family protein DNA-binding protein [Brevundimonas
          subvibrioides ATCC 15264]
          Length = 92

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 47/88 (53%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+++L+ +++K+ G+S+ D+ R +      I  S + G  ++IS+   F    + +R GR
Sbjct: 3  TQAELIAAVAKDAGVSQADAGRVLEAFVKNIHSSLIAGGDVRISNLGVFDTAARAAREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93
          N  T   +KI   + V F+ S  LK  +
Sbjct: 63 NPATGATIKIAASKAVRFRVSKPLKDAV 90


>gi|254456178|ref|ZP_05069607.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter
          sp. HTCC7211]
 gi|207083180|gb|EDZ60606.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter
          sp. HTCC7211]
          Length = 91

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 50/87 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  L+  +S    +S+ D+ R   T+ N I D+    +++KI+ F T+ V ++ +RVG
Sbjct: 1  MNKKQLIAQLSGSLNMSKADAERTFDTITNTILDALKGDDSVKIAGFGTYKVAKRKARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T ++++I   + V F  +  LK+
Sbjct: 61 RNPRTGEQIQIAASQKVKFLPAKALKE 87


>gi|291614260|ref|YP_003524417.1| histone family protein DNA-binding protein [Sideroxydans
          lithotrophicus ES-1]
 gi|291584372|gb|ADE12030.1| histone family protein DNA-binding protein [Sideroxydans
          lithotrophicus ES-1]
          Length = 91

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +SDL+++I+K   +S+  + R +      I  S  +GE + +  F TF+V ++ +R GRN
Sbjct: 4  KSDLIEAIAKSADISKAAAGRALDATIESIKKSLKKGELVSLVGFGTFYVGKRAARNGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           +T   +KI   +V  F+A   LK
Sbjct: 64 PRTGATIKIKAAKVPKFRAGKGLK 87


>gi|329890586|ref|ZP_08268929.1| DNA-binding protein HRm [Brevundimonas diminuta ATCC 11568]
 gi|328845887|gb|EGF95451.1| DNA-binding protein HRm [Brevundimonas diminuta ATCC 11568]
          Length = 92

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 48/88 (54%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+++L+ +++K+ G+S+ D+ + +T +   I  S   G  ++IS+   F   ++  R GR
Sbjct: 3  TQAELIAAVAKDAGVSQADAGKVLTAIVENIHKSLKSGGDVRISNLGVFDTAERAEREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93
          N  T   +KI   + V F+ S  LK  +
Sbjct: 63 NPATGATIKIPASKAVRFRVSKPLKDAV 90


>gi|241758757|ref|ZP_04756870.1| DNA-binding protein HU-beta [Neisseria flavescens SK114]
 gi|261380122|ref|ZP_05984695.1| DNA-binding protein HU-beta [Neisseria subflava NJ9703]
 gi|319638329|ref|ZP_07993092.1| DNA-binding protein HU-beta [Neisseria mucosa C102]
 gi|241320965|gb|EER57178.1| DNA-binding protein HU-beta [Neisseria flavescens SK114]
 gi|284796958|gb|EFC52305.1| DNA-binding protein HU-beta [Neisseria subflava NJ9703]
 gi|317400602|gb|EFV81260.1| DNA-binding protein HU-beta [Neisseria mucosa C102]
          Length = 89

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I++E G+S+  + + +    N + ++   G+ + +  F TF+V ++  R G
Sbjct: 1  MNKSELIEAIAQEAGISKSAAQKALDATTNAVTNALKNGDTVTLVGFGTFYVGERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + + I   +   F+A   LK
Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKALK 86


>gi|296314009|ref|ZP_06863950.1| DNA-binding protein HU-beta [Neisseria polysaccharea ATCC 43768]
 gi|296839379|gb|EFH23317.1| DNA-binding protein HU-beta [Neisseria polysaccharea ATCC 43768]
          Length = 91

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I+ E  L+++D+  FV    + +  +   G+ + +  F +FH  Q   R G
Sbjct: 1  MNKSELIQAIADEAELNKRDAAEFVDAFVSVVTQTLKDGKDVTLVGFGSFHAAQSAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I  R+   F A   LK  +
Sbjct: 61 RNPKTGEPLIIAARKTPKFHAGKALKDAV 89


>gi|225025737|ref|ZP_03714929.1| hypothetical protein EIKCOROL_02641 [Eikenella corrodens ATCC
          23834]
 gi|224941518|gb|EEG22727.1| hypothetical protein EIKCOROL_02641 [Eikenella corrodens ATCC
          23834]
          Length = 100

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 56/95 (58%), Gaps = 6/95 (6%)

Query: 5  ITRSDLVKSISKEF---GLSR---KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          +T+S+L+  +++++   G SR   KD  + V  L + +  +  RG+ I+I  F +F +  
Sbjct: 1  MTKSELMAHLAEKYLAQGHSRLAVKDVEQSVKVLVDAMTRALARGQRIEIRGFGSFDLNH 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          + +R+GRN +T ++V +  + V  FKA   L++R+
Sbjct: 61 RPARIGRNPKTGEKVNVPEKYVPHFKAGKELRERV 95


>gi|150020327|ref|YP_001305681.1| histone family protein DNA-binding protein [Thermosipho
          melanesiensis BI429]
 gi|149792848|gb|ABR30296.1| histone family protein DNA-binding protein [Thermosipho
          melanesiensis BI429]
          Length = 92

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +++ +LV  ++++   L +KD    +  +F  I D+   GE +++  F TF V++   R 
Sbjct: 1  MSKKELVNMVAEKMPELKKKDIKAVIDAVFEAISDALANGERVQLIGFGTFEVRKAEERT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          G N +T +++KI  R+V  FK    LK+++
Sbjct: 61 GVNPRTREKIKIPARKVPKFKPGKELKEKV 90


>gi|146310568|ref|YP_001175642.1| transcriptional regulator HU subunit beta [Enterobacter sp. 638]
 gi|145317444|gb|ABP59591.1| bacterial nucleoid protein HU beta subunit [Enterobacter sp. 638]
          Length = 90

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  L   + ++   G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDALIASVTETLQSGDDVALVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F+A   LK  +
Sbjct: 61 RNPQTGKEITIAAAKVPGFRAGKALKDAV 89


>gi|332523074|ref|ZP_08399326.1| DNA-binding protein HU-beta [Streptococcus porcinus str.
          Jelinkova 176]
 gi|332314338|gb|EGJ27323.1| DNA-binding protein HU-beta [Streptococcus porcinus str.
          Jelinkova 176]
          Length = 91

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 47/85 (55%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  I     +GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATDLTKKDSAAAVDAVFAAIEGFLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90
          N QT  E++I   +V  FKA   LK
Sbjct: 63 NPQTGAEIEIAASKVPAFKAGKALK 87


>gi|209885048|ref|YP_002288905.1| DNA-binding protein HU 1 [Oligotropha carboxidovorans OM5]
 gi|209873244|gb|ACI93040.1| DNA-binding protein HU 1 [Oligotropha carboxidovorans OM5]
          Length = 99

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 49/90 (54%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T   L  ++++E  LS+K +   +T L  ++     +G+ I+I       V+++ +R+
Sbjct: 10 TVTLKHLAAALAEEHELSKKTAEAILTDLVTKVTKHLKKGDRIRIVGLGILQVRKRAARM 69

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN  T + + I   + V F+AS  LK+ I
Sbjct: 70 GRNPATGEAIHIKASKKVAFRASKELKEAI 99


>gi|225850916|ref|YP_002731150.1| histone family protein DNA-binding protein [Persephonella marina
          EX-H1]
 gi|225645576|gb|ACO03762.1| histone family protein DNA-binding protein [Persephonella marina
          EX-H1]
          Length = 96

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 5/94 (5%)

Query: 5  ITRSDLVKSI--SKEFGLSRKDSTRFVTTLFNEICDSAVRGE---AIKISSFATFHVKQK 59
          +T++++V+ I  +K   +S+KD +  V  +F +I    V GE    ++IS F TF VK++
Sbjct: 1  MTKAEIVEWILKNKNPEVSKKDVSDVVNAIFEKIIQELVTGEDGHKVQISGFGTFIVKKR 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            ++GRN +T +E  I  R  + FKA   LK+ +
Sbjct: 61 APKIGRNPKTKEEKLIPERFGISFKAGKHLKESL 94


>gi|313667657|ref|YP_004047941.1| dna-binding protein HU-beta 2 [Neisseria lactamica ST-640]
 gi|313005119|emb|CBN86551.1| dna-binding protein HU-beta 2 [Neisseria lactamica 020-06]
          Length = 91

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I+ E  LS+ D+  FV    + +  +   G+ + +  F +FH  Q   R G
Sbjct: 1  MNKSELIQAIADEAELSKLDAAAFVDAFVSVVTQAMKDGKDVTLVGFGSFHTAQSAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I  R+   F+A   LK  +
Sbjct: 61 RNPKTGEPLIIAARKTPKFRAGKALKDAV 89


>gi|298345223|ref|YP_003717910.1| DNA-binding protein HU [Mobiluncus curtisii ATCC 43063]
 gi|304390783|ref|ZP_07372735.1| DNA-binding protein HU [Mobiluncus curtisii subsp. curtisii ATCC
          35241]
 gi|315655645|ref|ZP_07908543.1| DNA-binding protein HU [Mobiluncus curtisii ATCC 51333]
 gi|315656440|ref|ZP_07909329.1| DNA-binding protein HU [Mobiluncus curtisii subsp. holmesii ATCC
          35242]
 gi|298235284|gb|ADI66416.1| DNA-binding protein HU [Mobiluncus curtisii ATCC 43063]
 gi|304325666|gb|EFL92912.1| DNA-binding protein HU [Mobiluncus curtisii subsp. curtisii ATCC
          35241]
 gi|315489709|gb|EFU79336.1| DNA-binding protein HU [Mobiluncus curtisii ATCC 51333]
 gi|315492999|gb|EFU82601.1| DNA-binding protein HU [Mobiluncus curtisii subsp. holmesii ATCC
          35242]
          Length = 94

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 49/90 (54%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R++LV  I+K+ GLS+ ++   ++     + DS  +GE +K++         + +R 
Sbjct: 2  SVNRTELVAEIAKKAGLSKTEADGALSAFQEILIDSLKKGETVKVTGLMNVERVSRAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+KI     V   A S LKK +
Sbjct: 62 GRNPRTGEEIKIPAGYGVKISAGSTLKKAV 91


>gi|94309668|ref|YP_582878.1| integration host factor subunit beta [Cupriavidus metallidurans
          CH34]
 gi|123383988|sp|Q1LQG7|IHFB_RALME RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|93353520|gb|ABF07609.1| integration host factor beta subunit [Cupriavidus metallidurans
          CH34]
          Length = 135

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV+ ++  F  L  +D+   V T+ + + ++   G  I+I  F +F + ++  RV
Sbjct: 1  MTKSELVEKLAARFPQLLLRDADISVKTILDAMSEALADGHRIEIRGFGSFGLNKRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V +  +RV  FKA   L++R+
Sbjct: 61 GRNPKSGERVLVPEKRVPHFKAGKELRERV 90


>gi|322834043|ref|YP_004214070.1| histone family protein DNA-binding protein [Rahnella sp. Y9602]
 gi|321169244|gb|ADW74943.1| histone family protein DNA-binding protein [Rahnella sp. Y9602]
          Length = 91

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + D+   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRVLDAVLASVTDTLKAGDEVALVGFGTFSVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F+A   LK  +
Sbjct: 61 RNPQTGKEISIAAAKVPGFRAGKALKDAV 89


>gi|256820307|ref|YP_003141586.1| histone family protein DNA-binding protein [Capnocytophaga
          ochracea DSM 7271]
 gi|315223334|ref|ZP_07865193.1| integration host factor subunit alpha [Capnocytophaga ochracea
          F0287]
 gi|256581890|gb|ACU93025.1| histone family protein DNA-binding protein [Capnocytophaga
          ochracea DSM 7271]
 gi|314946665|gb|EFS98654.1| integration host factor subunit alpha [Capnocytophaga ochracea
          F0287]
          Length = 104

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 44/85 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++V  IS + GL + D    V    NE+ ++   G+ + +  F +F +K +  + G
Sbjct: 1  MTKAEIVSKISDKLGLDKNDVQLTVENFMNEVINTLESGQNVYLRGFGSFIIKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  +KI    +  FK + + 
Sbjct: 61 RNISKNTTLKIPAHNIPAFKPAKVF 85


>gi|70724919|ref|YP_257126.1| hypothetical protein pSG3GP_17 [Sodalis glossinidius]
 gi|68697150|emb|CAI59408.1| hypothetical protein pSG3.17 [Sodalis glossinidius]
          Length = 90

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L++++S++  +S+  +   +  + + +  S   G+ +KI+ F TF VK +  R G
Sbjct: 1  MNKSHLIRAVSEKTDISKIKAGFVIDAITDAVTQSLASGDDVKITGFGTFEVKTRAERPG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I   RV  F+A   LK+ +
Sbjct: 61 RNPKTGEAMTIPAARVPAFRAGKGLKEAV 89


>gi|94968214|ref|YP_590262.1| histone-like DNA-binding protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550264|gb|ABF40188.1| histone-like DNA-binding protein [Candidatus Koribacter versatilis
           Ellin345]
          Length = 107

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 49/89 (55%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S T+ + D++  +  + G+++  +   V T+F  +  +  RG+ I++  F  F+V+ + +
Sbjct: 16  SPTVIKLDIINEVVNKTGVTKTKAELAVETVFESMKKALSRGDRIELRGFGVFNVRPRKT 75

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
            +GRN +T  EV I P + V FK    L+
Sbjct: 76  GIGRNPRTGAEVNIPPGKAVRFKPGKELQ 104


>gi|90420560|ref|ZP_01228467.1| integration host factor, beta subunit [Aurantimonas manganoxydans
          SI85-9A1]
 gi|90335288|gb|EAS49041.1| integration host factor, beta subunit [Aurantimonas manganoxydans
          SI85-9A1]
          Length = 93

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV++I+ +   L ++D    V  +F+EI  +      +++  F  F VK +  R 
Sbjct: 1  MIKSELVQAIATRNPHLYQRDVETIVNAIFDEITGALCESNRVELRGFGAFSVKHRPPRS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V ++ + V  FKA   L++R+  D
Sbjct: 61 GRNPRTGEAVAVEEKWVPFFKAGKELRERLNAD 93


>gi|224369803|ref|YP_002603967.1| IhfA [Desulfobacterium autotrophicum HRM2]
 gi|223692520|gb|ACN15803.1| IhfA [Desulfobacterium autotrophicum HRM2]
          Length = 108

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++ +   K   +SR  S   +      I ++  +GE + IS F  F V +K +R G
Sbjct: 3  LTKTEITERFQKALDISRNTSYDIMEDFLEIIKETLEQGEDVMISGFGKFCVNEKKARKG 62

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T++E+ +  RRV+ FK S  L+  I
Sbjct: 63 RNPATSEEMILPARRVITFKCSGKLRNLI 91


>gi|291561223|emb|CBL40022.1| Bacterial nucleoid DNA-binding protein [butyrate-producing
          bacterium SS3/4]
          Length = 91

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  LS+KD+ + +    + I    V+GE +++  F TF V ++ +R G
Sbjct: 1  MNKTELIAAVAEQAELSKKDAEKALKAFTDVIAAELVKGEKVQLVGFGTFEVSEREAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN  T +++ I   +   FKA   LK
Sbjct: 61 RNPLTGEKITIAASKNPKFKAGKALK 86


>gi|225027811|ref|ZP_03717003.1| hypothetical protein EUBHAL_02071 [Eubacterium hallii DSM 3353]
 gi|224954861|gb|EEG36070.1| hypothetical protein EUBHAL_02071 [Eubacterium hallii DSM 3353]
          Length = 91

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++   L++KD+ + +    + + D   +GE I+++ F TF V ++ +R G
Sbjct: 1  MNKTELVAAIAERTELTKKDADQALKAFIDVVGDELSKGEKIQLAGFGTFEVTERAARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T + + I   +   FKA   LK+++
Sbjct: 61 INPRTKETIHIPASKAPKFKAMKSLKEKV 89


>gi|223041461|ref|ZP_03611664.1| integration host factor, alpha chain [Actinobacillus minor 202]
 gi|240949160|ref|ZP_04753507.1| integration host factor subunit alpha [Actinobacillus minor
          NM305]
 gi|223017719|gb|EEF16126.1| integration host factor, alpha chain [Actinobacillus minor 202]
 gi|240296463|gb|EER47099.1| integration host factor subunit alpha [Actinobacillus minor
          NM305]
          Length = 98

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 54/90 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+ +L +++ ++ G  ++ +  F+   F EI  +   GE +K+S F  F V++K +R 
Sbjct: 2  ALTKIELAEALVEKCGFEKRTAKLFIDQFFEEIKRALTTGEEVKLSGFGNFSVREKNARP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  RRVVVFKA   ++ R+
Sbjct: 62 GRNPKTGESVAVSARRVVVFKAGQKMRDRV 91


>gi|163759320|ref|ZP_02166406.1| histone-like protein [Hoeflea phototrophica DFL-43]
 gi|162283724|gb|EDQ34009.1| histone-like protein [Hoeflea phototrophica DFL-43]
          Length = 90

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ G+S+ D+T  V  +F  I      G  +++  F  F V ++ +  G
Sbjct: 1  MNKNELVAAVAEKSGISKGDATSAVEAVFETITGELKNGGDVRLIGFGNFTVSRREASKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +EV I  R V  F A   LK
Sbjct: 61 RNPQTGKEVDIPARNVPKFSAGKGLK 86


>gi|150014983|ref|YP_001307237.1| histone family protein DNA-binding protein [Clostridium
          beijerinckii NCIMB 8052]
 gi|118264|sp|P05385|DBH_CLOPA RecName: Full=DNA-binding protein HU
 gi|149901448|gb|ABR32281.1| histone family protein DNA-binding protein [Clostridium
          beijerinckii NCIMB 8052]
 gi|224155|prf||1011218A protein II,DNA binding
          Length = 91

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  L++KD+   +  L   + ++  +GE +++  F TF  +++ +R G
Sbjct: 1  MNKAELITSMAEKSKLTKKDAELALKALIESVEEALEKGEKVQLVGFGTFETRERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I    V VFKA    K ++
Sbjct: 61 RNPRTKEVINIPATTVPVFKAGKEFKDKV 89


>gi|302343276|ref|YP_003807805.1| histone family protein DNA-binding protein [Desulfarculus baarsii
          DSM 2075]
 gi|301639889|gb|ADK85211.1| histone family protein DNA-binding protein [Desulfarculus baarsii
          DSM 2075]
          Length = 101

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  ++  + +   L +  S   V T    I +S    + + IS F  F VK K +R 
Sbjct: 2  ALTKDHIISEVFERTQLPKSRSREVVETTLEIIKNSLADSDDLLISGFGKFLVKDKRARR 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QT  ++K+  R+VVVFK S +L+K +
Sbjct: 62 GRNPQTKADMKLRARKVVVFKTSGVLRKHL 91


>gi|163793185|ref|ZP_02187161.1| Histone-like DNA-binding protein [alpha proteobacterium BAL199]
 gi|159181831|gb|EDP66343.1| Histone-like DNA-binding protein [alpha proteobacterium BAL199]
          Length = 90

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++   GLS+ DS + V  +F+EI     +G  +++  F TF V  + +  G
Sbjct: 1  MNKNELVAAVADSTGLSKADSGKAVDAVFDEITGQLKKGGDVRLVGFGTFSVASRAASEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +++ I   +   FK    LK  +
Sbjct: 61 RNPRTGEKIAIPASKQPKFKPGKGLKDSV 89


>gi|148264197|ref|YP_001230903.1| histone family protein DNA-binding protein [Geobacter
          uraniireducens Rf4]
 gi|146397697|gb|ABQ26330.1| histone family protein DNA-binding protein [Geobacter
          uraniireducens Rf4]
          Length = 91

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++++ + GLS K +   +  +F+ + ++ + G+ I+I  F +F VK   +  G
Sbjct: 1  MNKSELIEALATKKGLSYKKAEEIINVIFDSMTNALLDGDRIEIRGFGSFVVKGYQAYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + +  +++  FK    LK+++
Sbjct: 61 RNPKTGESIAVKSKKLPFFKVGKELKEKV 89


>gi|325983542|ref|YP_004295944.1| integration host factor, beta subunit [Nitrosomonas sp. AL212]
 gi|325533061|gb|ADZ27782.1| integration host factor, beta subunit [Nitrosomonas sp. AL212]
          Length = 96

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  ++  F  L  KD+   V T+ + +  S   G+ I+I  F +F +  +  R+
Sbjct: 1  MTKSELITRLAARFPQLVAKDAELSVKTIIDAMAQSLASGQRIEIRGFGSFDLNYRPPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++VK+  + V  FKA   +++R+
Sbjct: 61 GRNPKSGEKVKVPEKYVPHFKAGKEMRERV 90


>gi|85860306|ref|YP_462508.1| DNA-binding protein HU [Syntrophus aciditrophicus SB]
 gi|85723397|gb|ABC78340.1| DNA-binding protein HU [Syntrophus aciditrophicus SB]
          Length = 91

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLV++++K  G  +K +   V  + + + ++  +GE++ +  F TF V ++ +R G
Sbjct: 1  MNKGDLVEAVTKVVG-KKKLAQETVGCVLDTMTEALKKGESVTLIGFGTFKVMKRSARTG 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + +KI  ++V  F A   LK+ +
Sbjct: 60 RNPQTGKPIKIKAKKVPKFTAGKKLKEAV 88


>gi|88799151|ref|ZP_01114731.1| probable DNA-binding protein [Reinekea sp. MED297]
 gi|88778134|gb|EAR09329.1| probable DNA-binding protein [Reinekea sp. MED297]
          Length = 95

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L  +I++   LS+  +   +  L ++I  S  + E++ +  F TF  + +  R G+N
Sbjct: 8  KPELAAAIAERADLSKDKAGEVLNVLLDQITQSVAKKESVTLVGFGTFEARSRAKRKGKN 67

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT  E++I     V FKA   LK
Sbjct: 68 PQTGAEIEIPASNTVAFKAGKALK 91


>gi|39936018|ref|NP_948294.1| DNA-binding protein HU-alpha [Rhodopseudomonas palustris CGA009]
 gi|192291674|ref|YP_001992279.1| histone family protein DNA-binding protein [Rhodopseudomonas
           palustris TIE-1]
 gi|316933828|ref|YP_004108810.1| histone family protein DNA-binding protein [Rhodopseudomonas
           palustris DX-1]
 gi|39649872|emb|CAE28394.1| possible DNA-binding protein hu-alpha (NS2) (HU-2)
           [Rhodopseudomonas palustris CGA009]
 gi|192285423|gb|ACF01804.1| histone family protein DNA-binding protein [Rhodopseudomonas
           palustris TIE-1]
 gi|315601542|gb|ADU44077.1| histone family protein DNA-binding protein [Rhodopseudomonas
           palustris DX-1]
          Length = 103

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T   L  ++++E  LS+K +   +  +   I     +GE I+I       V+++ +R+
Sbjct: 14  TVTLKHLAAALAEEHELSKKQTEAILGDMVTRITKHLKKGERIRIVGLGILQVRKRAARM 73

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN  T ++++I   + V F+A+  LK+ I
Sbjct: 74  GRNPATGEQIQIKASKKVAFRAAKELKEAI 103


>gi|194288914|ref|YP_002004821.1| integration host factor subunit beta [Cupriavidus taiwanensis LMG
          19424]
 gi|193222749|emb|CAQ68752.1| Integration host factor, beta subunit [Cupriavidus taiwanensis
          LMG 19424]
          Length = 141

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 4  TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+S+LV+ ++  F  L  +D+   V T+ + + ++   G  I+I  F +F + ++  R
Sbjct: 2  PMTKSELVEKLAARFPQLLLRDADISVKTILDAMSEALADGHRIEIRGFGSFGLNRRPPR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          VGRN ++ + V +  +RV  FKA   L++R+
Sbjct: 62 VGRNPKSGERVLVPEKRVPHFKAGKELRERV 92


>gi|298207122|ref|YP_003715301.1| DNA-binding protein HU [Croceibacter atlanticus HTCC2559]
 gi|83849756|gb|EAP87624.1| DNA-binding protein HU [Croceibacter atlanticus HTCC2559]
          Length = 97

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 50/97 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D+V  I+   G+ + +    V T   E+  S   GE + +  F +F +K++  + G
Sbjct: 1   MTKADIVAKIADRIGMEKNEVQATVETFMEEVKTSLEGGENVYLRGFGSFIIKERAEKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           RN+  N  +KI    +  FK + +  + + +++  +K
Sbjct: 61  RNISKNTTIKIPAHNIPAFKPAKVFMEGVKENVSVKK 97


>gi|298528590|ref|ZP_07015994.1| histone family protein DNA-binding protein [Desulfonatronospira
          thiodismutans ASO3-1]
 gi|298512242|gb|EFI36144.1| histone family protein DNA-binding protein [Desulfonatronospira
          thiodismutans ASO3-1]
          Length = 90

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  +V S++++ G+++ D+ + +  + + I +    G+ + +  F TF V ++  R G
Sbjct: 1  MNKKQMVDSLAQKSGMTKADAQKALDGVEDIISEQLKNGDQVALPGFGTFTVAERKPRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E+ I   RV  FK    LK+ +
Sbjct: 61 RNPQTGAEINIPAARVPKFKPGKKLKEAV 89


>gi|209694401|ref|YP_002262329.1| DNA-binding protein HU-beta [Aliivibrio salmonicida LFI1238]
 gi|208008352|emb|CAQ78507.1| DNA-binding protein HU-beta [Aliivibrio salmonicida LFI1238]
          Length = 98

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 48/87 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+ +S LV  I++   +S+  + R +  L   + ++   G+ + +  F +F V+++ +R 
Sbjct: 8  TVNKSQLVDQIAENADISKAAAGRALDALVETVTETLKSGDQVTLVGFGSFIVRERAART 67

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T + ++I   +V  FKA   LK
Sbjct: 68 GRNPKTGEAIEISAAKVPAFKAGKALK 94


>gi|326408175|gb|ADZ65240.1| integration host factor subunit beta [Brucella melitensis M28]
 gi|326537888|gb|ADZ86103.1| integration host factor, beta subunit [Brucella melitensis M5-90]
          Length = 94

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I S+   L ++D    V  +F+EI ++   G  +++ SF  F VK + +R 
Sbjct: 1  MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRSFGAFSVKNRPARS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FK    L+ R+
Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRL 90


>gi|88810610|ref|ZP_01125867.1| DNA-binding protein HU-beta, NS1 [Nitrococcus mobilis Nb-231]
 gi|88792240|gb|EAR23350.1| DNA-binding protein HU-beta, NS1 [Nitrococcus mobilis Nb-231]
          Length = 90

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ +++   LS+  ++R V      + D+   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSELIEVVAQSADLSKAAASRAVDAFVTSVTDALKEGDQVTLVGFGTFAVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I   +   FKA   LK  +
Sbjct: 61 RNPRTGESITIPASKTPGFKAGKALKDAV 89


>gi|296313665|ref|ZP_06863606.1| DNA-binding protein HU-beta [Neisseria polysaccharea ATCC 43768]
 gi|296839808|gb|EFH23746.1| DNA-binding protein HU-beta [Neisseria polysaccharea ATCC 43768]
          Length = 89

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I++E G+S+  + + +    N + ++  +G+ + +  F TF+V ++  R G
Sbjct: 1  MNKSELIEAIAQEAGISKVAAQKALDATTNAVTNALKQGDTVTLVGFGTFYVGERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + + I   +   F+A   LK
Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKALK 86


>gi|282855395|ref|ZP_06264718.1| histone family protein DNA-binding protein [Pyramidobacter
          piscolens W5455]
 gi|282586775|gb|EFB92020.1| histone family protein DNA-binding protein [Pyramidobacter
          piscolens W5455]
          Length = 112

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV+ + ++  L + D+   V  +   + D+  +   ++I  F TF V+Q+ +R G
Sbjct: 1  MTKAELVEFVREKTNLRKVDAANAVAAMLEGVKDTLQKQGKVQIVGFGTFEVRQRSARTG 60

Query: 65 RNLQ-TNQEVKIDPRRVVVFKASSILKKRI 93
          RN Q  ++ V I  ++V VFKA  +L++ +
Sbjct: 61 RNPQDPSKTVHIPAKKVPVFKAGKLLREAV 90


>gi|255534616|ref|YP_003094987.1| DNA-binding protein HU [Flavobacteriaceae bacterium 3519-10]
 gi|255340812|gb|ACU06925.1| DNA-binding protein HU [Flavobacteriaceae bacterium 3519-10]
          Length = 96

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV +IS + G  + ++ + V     EI  S   G+ + +  F +F +K + ++ G
Sbjct: 1  MTKAELVSTISNKLGTEKNETQKVVEAFMQEIRTSMYNGDNVYLRGFGSFVIKTRAAKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN+  N  ++I    +  FK S    +++
Sbjct: 61 RNISKNTAIEIPAHNIPAFKPSKTFVEKV 89


>gi|163788099|ref|ZP_02182545.1| keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate
          aldolase [Flavobacteriales bacterium ALC-1]
 gi|159876419|gb|EDP70477.1| keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate
          aldolase [Flavobacteriales bacterium ALC-1]
          Length = 90

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 50/85 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  +++  G+++  + + + +L  +I  S  +G  + +  F ++ V ++ +R G
Sbjct: 1  MNKTDLINGMAENAGITKAAAKKALDSLLVDIEGSLQKGNRVSLVGFGSWSVSRRAARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN QT + +KI  + VV FKA S L
Sbjct: 61 RNPQTGKTIKIKAKNVVKFKAGSDL 85


>gi|148266417|ref|YP_001233123.1| histone family protein DNA-binding protein [Geobacter
          uraniireducens Rf4]
 gi|222056893|ref|YP_002539255.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32]
 gi|146399917|gb|ABQ28550.1| histone family protein DNA-binding protein [Geobacter
          uraniireducens Rf4]
 gi|221566182|gb|ACM22154.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32]
          Length = 94

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV++++K   L++  + + V    + +  +  +G+ + +  F +F V  + +R G
Sbjct: 1  MTKAELVEAVAKSASLTKGAAEKAVGAFISTVSGALKKGDRVTLVGFGSFEVASRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+KI   +V  F+    LK
Sbjct: 61 RNPQTGKEIKIAAAKVPKFRPGKALK 86


>gi|117925353|ref|YP_865970.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
 gi|117609109|gb|ABK44564.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
          Length = 91

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+ +++++  L ++ +   V  +FNE+  +  +GE +++  F  F  + +  R  
Sbjct: 1  MTKSELILAVAEQNTLHKQSAVMVVDMVFNELGKALAKGERVELRGFGVFEPRARKPRTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T ++V ++ +  V FK    +++R+
Sbjct: 61 RNPKTGKKVNVESKTAVHFKPGLDMRRRV 89


>gi|299144441|ref|ZP_07037521.1| DNA-binding protein HU [Peptoniphilus sp. oral taxon 386 str.
          F0131]
 gi|298518926|gb|EFI42665.1| DNA-binding protein HU [Peptoniphilus sp. oral taxon 386 str.
          F0131]
          Length = 92

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 52/88 (59%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV SI+++  L++KD+   +      + ++   GE +++  F TF V+++ +R G
Sbjct: 1  MNKSELVASIAQKSNLTKKDAEMALNGFLATVEEALAGGEKVQLVGFGTFEVRERKAREG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKK 91
          RN +  +E +KI   +  VF+A   LK+
Sbjct: 61 RNPRDPKEIIKIPASKAPVFRAGKALKE 88


>gi|194291213|ref|YP_002007120.1| DNA-binding protein hu-beta, ns1 (hu-1), plays a role in DNA
          replication and in rpo translation [Cupriavidus
          taiwanensis LMG 19424]
 gi|193225048|emb|CAQ71059.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Cupriavidus
          taiwanensis LMG 19424]
          Length = 92

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++L+ +I+    GL++  + + +    + I D+  +G+ + +  F TF   ++G R+
Sbjct: 1  MTKTELIDAIAAGVDGLTKAKAEQALNVTLSAIMDAVAKGDTLSLIGFGTFSKGERGERM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T +E+K++  + V FKA    K  +
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAV 90


>gi|160891545|ref|ZP_02072548.1| hypothetical protein BACUNI_03997 [Bacteroides uniformis ATCC
          8492]
 gi|270295354|ref|ZP_06201555.1| DNA-binding protein HU-beta [Bacteroides sp. D20]
 gi|317478350|ref|ZP_07937514.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36]
 gi|156858952|gb|EDO52383.1| hypothetical protein BACUNI_03997 [Bacteroides uniformis ATCC
          8492]
 gi|270274601|gb|EFA20462.1| DNA-binding protein HU-beta [Bacteroides sp. D20]
 gi|316905509|gb|EFV27299.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36]
          Length = 88

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 49/85 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ E GLS+ DS + +      +  +   G+ + +  F TF V ++G+R+G
Sbjct: 1  MNKAELISAMAAESGLSKTDSKKALDAFIASVTKAMKAGDKVSLVGFGTFSVVERGARMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N  T + ++I  ++VV FK  + L
Sbjct: 61 INPSTKKPIEIAAKKVVKFKPGTEL 85


>gi|284928746|ref|YP_003421268.1| nucleoid DNA-binding protein [cyanobacterium UCYN-A]
 gi|284809205|gb|ADB94910.1| bacterial nucleoid DNA-binding protein [cyanobacterium UCYN-A]
          Length = 93

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 49/93 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLV +I+ +  L++K++++ +  L + I ++   G  + +  F TF  + +  R G
Sbjct: 1  MNKEDLVNTIAAKTRLTKKETSQILDALTSTIMETVASGNKVVLVGFGTFEPRDRKERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           N QT Q + I    V  F A  + K ++++ M
Sbjct: 61 MNPQTGQPITIPATTVPAFSAGKVFKGKVVESM 93


>gi|113866825|ref|YP_725314.1| integration host factor subunit beta [Ralstonia eutropha H16]
 gi|113525601|emb|CAJ91946.1| integration host factor beta subunit [Ralstonia eutropha H16]
          Length = 140

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV+ ++  F  L  +D+   V T+ + + ++   G  I+I  F +F + ++  RV
Sbjct: 1  MTKSELVEKLAARFPQLLLRDADISVKTILDAMSEALADGHRIEIRGFGSFGLNKRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V +  +RV  FKA   L++R+
Sbjct: 61 GRNPKSGERVLVPEKRVPHFKAGKELRERV 90


>gi|218885604|ref|YP_002434925.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris str. 'Miyazaki F']
 gi|218756558|gb|ACL07457.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris str. 'Miyazaki F']
          Length = 90

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  I+ +  L++  + R +    + + D+      + ++ F TF V+ + +R G
Sbjct: 1  MTKADLVDKIAAKANLTKASAERSLNAFLDAVKDALAAEGKLTLTGFGTFAVEDRQARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  E+KI   +VV F+    LK  I
Sbjct: 61 RNPRTGAEIKIPASKVVKFRPGKTLKDSI 89


>gi|149369658|ref|ZP_01889510.1| DNA-binding protein HU [unidentified eubacterium SCB49]
 gi|149357085|gb|EDM45640.1| DNA-binding protein HU [unidentified eubacterium SCB49]
          Length = 96

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 44/85 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  IS++ G+ + D    V T   E+  S   G+ + +  F +F +K +  + G
Sbjct: 1  MTKADIVAKISEKLGMEKGDVQATVETFMAEVKTSLESGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  +KI    +  FK + + 
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVF 85


>gi|227499519|ref|ZP_03929626.1| DNA-binding protein HU [Anaerococcus tetradius ATCC 35098]
 gi|227218398|gb|EEI83649.1| DNA-binding protein HU [Anaerococcus tetradius ATCC 35098]
          Length = 92

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +IS++ GL + ++ + +      + +S + G+ +++  F TF V+ + +R G
Sbjct: 1  MNKSELLINISEKSGLKKSEAEKALNAFLETVTESLIAGDKVQLVGFGTFEVRDRKAREG 60

Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93
          RN +  +EV +I   +  VFKA   LK+ +
Sbjct: 61 RNPRKPEEVIQIPASKAPVFKAGKTLKEAV 90


>gi|225174944|ref|ZP_03728941.1| histone family protein DNA-binding protein [Dethiobacter
          alkaliphilus AHT 1]
 gi|225169584|gb|EEG78381.1| histone family protein DNA-binding protein [Dethiobacter
          alkaliphilus AHT 1]
          Length = 84

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 44/79 (55%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          ++D+ +SI+++  +  KD+   V  L + I +S   GEA+K++ F TF ++    R  RN
Sbjct: 3  KTDVARSIAEKLNIQVKDAETTVNGLIDTITESLSAGEAVKLAGFGTFDLRHAPERAARN 62

Query: 67 LQTNQEVKIDPRRVVVFKA 85
           +T + V++       F+A
Sbjct: 63 PKTGETVQVPATHYPTFRA 81


>gi|195952487|ref|YP_002120777.1| histone family protein DNA-binding protein [Hydrogenobaculum sp.
          Y04AAS1]
 gi|195932099|gb|ACG56799.1| histone family protein DNA-binding protein [Hydrogenobaculum sp.
          Y04AAS1]
          Length = 102

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 20 LSRKDSTRFVTTLFNEICDSAV--RGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDP 77
          L ++D +R +    N + D+ +  +   I++S F TF++K++  R+GRN +T    KI P
Sbjct: 21 LKKRDVSRIINMFLNALEDAIISKKENKIQLSGFGTFYIKERKPRIGRNPKTGDLYKIPP 80

Query: 78 RRVVVFKASS 87
          R  + FK S 
Sbjct: 81 RYNLTFKPSQ 90


>gi|300775502|ref|ZP_07085363.1| integration host factor subunit alpha [Chryseobacterium gleum
          ATCC 35910]
 gi|300505529|gb|EFK36666.1| integration host factor subunit alpha [Chryseobacterium gleum
          ATCC 35910]
          Length = 96

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 44/82 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV +IS + G  + ++ + V     EI  S   G+ + +  F +F +K + ++ G
Sbjct: 1  MTKAELVNTISNKLGTEKNETQKVVEAFMQEIRTSMYNGDNVYLRGFGSFIIKTRAAKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  ++I    +  FK S
Sbjct: 61 RNISKNTAIEIPAHNIPAFKPS 82


>gi|218768639|ref|YP_002343151.1| DNA-binding protein HU-beta [Neisseria meningitidis Z2491]
 gi|304386918|ref|ZP_07369179.1| DNA-binding protein HU-beta [Neisseria meningitidis ATCC 13091]
 gi|14194646|sp|Q9JR30|DBHC_NEIMA RecName: Full=DNA-binding protein HU-beta 2
 gi|6900359|emb|CAB71971.1| putative DNA-binding protein [Neisseria meningitidis]
 gi|121052647|emb|CAM08987.1| DNA-binding protein HU-beta [Neisseria meningitidis Z2491]
 gi|304339023|gb|EFM05116.1| DNA-binding protein HU-beta [Neisseria meningitidis ATCC 13091]
 gi|319410872|emb|CBY91264.1| DNA-binding protein HU-B [Neisseria meningitidis WUE 2594]
          Length = 91

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I+ E  LS++ +  FV    + +      G  + +  F TFH  Q   R G
Sbjct: 1  MNKSELIQAIADEAELSKRAAAEFVNAFVSVVTQELKDGNDVTLVGFGTFHAAQSAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I  R+   F++   LK  +
Sbjct: 61 RNPKTGEPLTIAARKTPKFRSGKALKDAV 89


>gi|226227080|ref|YP_002761186.1| DNA-binding protein [Gemmatimonas aurantiaca T-27]
 gi|226090271|dbj|BAH38716.1| DNA-binding protein [Gemmatimonas aurantiaca T-27]
          Length = 110

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 6/95 (6%)

Query: 5  ITRSDLVKSISKEFG------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          +T++DLV++++          +S+KD  R V    + I ++    + I++  F TF ++Q
Sbjct: 1  MTKADLVENVTARIAQTAGPTISKKDCARVVDAFLDAIKEALQEQKNIEVRGFGTFKIRQ 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          + +R+ RN +T   V++  R V VFK S  L+  +
Sbjct: 61 RKTRMARNPRTGSPVEVSARPVPVFKPSKELRAMV 95


>gi|282878889|ref|ZP_06287653.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310]
 gi|281298888|gb|EFA91293.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310]
          Length = 95

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 49/85 (57%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          + +  +S+  G +++ +  +V TL  E+ +    GE+I I SF TF VK++  R+  N  
Sbjct: 5  EFIAELSRRAGYTQEQTQNYVRTLVEEMTNILGEGESIAIPSFGTFEVKKRMERILTNPS 64

Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93
          T +++ + P+ V+ F+    +K+++
Sbjct: 65 TGKKMLVPPKLVLSFRPMPSVKEQL 89


>gi|256820793|ref|YP_003142072.1| histone family protein DNA-binding protein [Capnocytophaga
          ochracea DSM 7271]
 gi|315223936|ref|ZP_07865781.1| DNA-binding protein HU-beta [Capnocytophaga ochracea F0287]
 gi|256582376|gb|ACU93511.1| histone family protein DNA-binding protein [Capnocytophaga
          ochracea DSM 7271]
 gi|314946108|gb|EFS98112.1| DNA-binding protein HU-beta [Capnocytophaga ochracea F0287]
          Length = 92

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+   GL++ DS + V   F+ +  +  +G+ + +  F ++ V +K +R  
Sbjct: 1  MNKSELIDAIAAGSGLTKTDSKKAVEAFFSSVEKALKKGDKVAVVGFGSWSVAKKEAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   +K+  ++VV FKA + L + +
Sbjct: 61 RNPRTGAVIKVPAKKVVKFKAGAELSEAV 89


>gi|187924976|ref|YP_001896618.1| integration host factor subunit beta [Burkholderia phytofirmans
          PsJN]
 gi|226709783|sp|B2T634|IHFB_BURPP RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|187716170|gb|ACD17394.1| integration host factor, beta subunit [Burkholderia phytofirmans
          PsJN]
          Length = 107

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV  ++  F  L  KD+   V T+ + + ++   G  I+I  F +F + ++ SRV
Sbjct: 1  MTKSELVAQLAARFPQLVLKDADFAVKTMLDAMSEALANGHRIEIRGFGSFGLNRRPSRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V +  + V  FK    L++R+
Sbjct: 61 GRNPKSGEKVLVPEKYVPHFKPGKELRERV 90


>gi|127511364|ref|YP_001092561.1| histone family protein DNA-binding protein [Shewanella loihica
          PV-4]
 gi|126636659|gb|ABO22302.1| histone family protein DNA-binding protein [Shewanella loihica
          PV-4]
          Length = 90

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  I++   L++ ++ R + +    + ++   GE I I  F +F    + +R G
Sbjct: 1  MNKTELVAKIAESAELTKAEAARALKSFEETVAEAMKNGEKISIVGFGSFETTSRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I    V  FKA   LK
Sbjct: 61 RNPQTGKEIQIPAAVVPKFKAGKTLK 86


>gi|220907896|ref|YP_002483207.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
          7425]
 gi|219864507|gb|ACL44846.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
          7425]
          Length = 95

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +++++  + +KD+   +T     I ++   G+ + +  F +F  +++ +R G
Sbjct: 1  MNKGELVDAVAQKANVKKKDADAVLTAALETIMETVSSGDKVTLVGFGSFEPRERQAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +TN+++ I   RV  F A  + K+++
Sbjct: 61 RNPKTNEKMVIPATRVPAFSAGKLFKEKV 89


>gi|90023476|ref|YP_529303.1| nucleoid protein Hbs [Saccharophagus degradans 2-40]
 gi|89953076|gb|ABD83091.1| bacterial nucleoid protein Hbs [Saccharophagus degradans 2-40]
          Length = 91

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 49/89 (55%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +SDLV++++    LS + +   V+ +F+ I ++  R +++ +  F +F  +++ +R GRN
Sbjct: 3  KSDLVEAVANAADLSPRQADDAVSAIFDHITNALARKDSVNLVGFGSFITRERAARQGRN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           QT   + I    +  FK    LK  ++D
Sbjct: 63 PQTGAAINIAASVLPAFKPGKKLKDALVD 91


>gi|59711406|ref|YP_204182.1| HU, DNA-binding transcriptional regulator, beta subunit [Vibrio
          fischeri ES114]
 gi|59479507|gb|AAW85294.1| HU, DNA-binding transcriptional regulator, beta subunit [Vibrio
          fischeri ES114]
          Length = 98

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 48/87 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+ +S LV  I++   +S+  + R +  L   + ++   G+ + +  F +F V+++ +R 
Sbjct: 8  TVNKSQLVDQIAESADISKAAAGRALDALVETVTETLKSGDQVTLVGFGSFVVRERAART 67

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T + ++I   +V  FKA   LK
Sbjct: 68 GRNPKTGEAIEISAAKVPAFKAGKALK 94


>gi|225075294|ref|ZP_03718493.1| hypothetical protein NEIFLAOT_00297 [Neisseria flavescens
           NRL30031/H210]
 gi|224953469|gb|EEG34678.1| hypothetical protein NEIFLAOT_00297 [Neisseria flavescens
           NRL30031/H210]
          Length = 109

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 49/86 (56%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +S+L+++I++E G+S+  + + +    N + ++   G+ + +  F TF+V ++  R G
Sbjct: 21  VNKSELIEAIAQEAGISKSAAQKALDATTNAVTNALKNGDTVTLVGFGTFYVGERAERQG 80

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILK 90
           RN +T + + I   +   F+A   LK
Sbjct: 81  RNPKTGEPLTIAAAKTPKFRAGKALK 106


>gi|163757832|ref|ZP_02164921.1| putative integration host factor beta subunit [Hoeflea
          phototrophica DFL-43]
 gi|162285334|gb|EDQ35616.1| putative integration host factor beta subunit [Hoeflea
          phototrophica DFL-43]
          Length = 96

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV++++ +   L  +D    V  + +EI D+  +G  +++  F  F VK +  R 
Sbjct: 1  MIKSELVQAVAARNPHLYHRDVENIVNAVLDEITDALSQGTRVELRGFGAFSVKNRPPRS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V ++ + V  FK    L++R+  D
Sbjct: 61 GRNPRTGEPVFVEEKWVPFFKTGKELRERLNPD 93


>gi|258406356|ref|YP_003199098.1| histone family protein DNA-binding protein [Desulfohalobium
          retbaense DSM 5692]
 gi|257798583|gb|ACV69520.1| histone family protein DNA-binding protein [Desulfohalobium
          retbaense DSM 5692]
          Length = 98

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           KT+T++D+V +I ++   SR +    V  + + + DS  +  A+ IS F  F    K  
Sbjct: 3  GKTLTKADIVDAIYEQGQRSRAEVKNIVEDMLDIMRDSIKKDYALLISGFGKFEAYDKEP 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKAS 86
          R GRN QT + + +  R VVVF+ S
Sbjct: 63 RKGRNPQTEEAITLPGRTVVVFRLS 87


>gi|218245818|ref|YP_002371189.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
          8801]
 gi|257058864|ref|YP_003136752.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
          8802]
 gi|218166296|gb|ACK65033.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
          8801]
 gi|256589030|gb|ACU99916.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
          8802]
          Length = 98

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLV  I+ +  +++KD+++ +  L   I ++   GE + +  F TF  + +  R G
Sbjct: 1  MNKEDLVNMIAAKTRITKKDTSQILDALTETIMETVASGEKVVLVGFGTFEPRDRKERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N QT Q + I    V  F A  + K+++++
Sbjct: 61 MNPQTGQPITIPATTVPAFSAGKVFKEQVVN 91


>gi|167747374|ref|ZP_02419501.1| hypothetical protein ANACAC_02093 [Anaerostipes caccae DSM 14662]
 gi|317471104|ref|ZP_07930476.1| DNA-binding protein [Anaerostipes sp. 3_2_56FAA]
 gi|167653352|gb|EDR97481.1| hypothetical protein ANACAC_02093 [Anaerostipes caccae DSM 14662]
 gi|316901418|gb|EFV23360.1| DNA-binding protein [Anaerostipes sp. 3_2_56FAA]
          Length = 92

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+ +  LS+KD+ + +    + I +   +GE I++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAIASKTELSKKDAEKALKAFTDVIAEELKKGEKIQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN ++ + + I   +   FKA   LK
Sbjct: 61 RNPRSGEVMNIPASKAPKFKAGKALK 86


>gi|237746607|ref|ZP_04577087.1| DNA-binding protein Hu-beta [Oxalobacter formigenes HOxBLS]
 gi|229377958|gb|EEO28049.1| DNA-binding protein Hu-beta [Oxalobacter formigenes HOxBLS]
          Length = 90

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+K   +S+  + R +  +   I ++  +  ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIEYIAKSADISKAAAARSLDAVMEAITETLKKDGSVTLVGFGTFSVGERAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E+KI   RV  F+A  +LK
Sbjct: 61 RNPRTGEEIKIKSARVPKFRAGKLLK 86


>gi|307719533|ref|YP_003875065.1| DNA-binding protein HbbU [Spirochaeta thermophila DSM 6192]
 gi|306533258|gb|ADN02792.1| DNA-binding protein HbbU [Spirochaeta thermophila DSM 6192]
          Length = 102

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 56/95 (58%), Gaps = 1/95 (1%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK-QKG 60
          ++ +T++ +V++IS+   LS+KD    + + F+E+  + V G+ +++  F TF ++ +KG
Sbjct: 5  TEKLTKAQIVENISQHCDLSKKDIQFVIDSFFSEVKRALVEGKTVELRGFGTFEIRVRKG 64

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
              RN +T + VK++   V VF+    LK  + +
Sbjct: 65 RDRARNPKTGEIVKVEDHGVAVFRPGKELKDSVWN 99


>gi|198283154|ref|YP_002219475.1| integration host factor subunit beta [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218667528|ref|YP_002425383.1| integration host factor, beta subunit [Acidithiobacillus
          ferrooxidans ATCC 23270]
 gi|198247675|gb|ACH83268.1| integration host factor, beta subunit [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218519741|gb|ACK80327.1| integration host factor, beta subunit [Acidithiobacillus
          ferrooxidans ATCC 23270]
          Length = 101

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+K+IS ++  LS +D       + + + D+   GE I+I  F +F +  + ++ 
Sbjct: 1  MTKSELIKNISAQYPHLSVRDIEMATRQMLDYLSDALAEGERIEIRGFGSFSMHVRPAKQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  +RV  FK    L++++
Sbjct: 61 GRNPKTGEPVLVPEKRVPHFKPGKELREQV 90


>gi|323358137|ref|YP_004224533.1| bacterial nucleoid DNA-binding protein [Microbacterium testaceum
          StLB037]
 gi|323274508|dbj|BAJ74653.1| bacterial nucleoid DNA-binding protein [Microbacterium testaceum
          StLB037]
          Length = 95

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 48/91 (52%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K+IT+++LV SI+   G S+   +  + +LF+ + ++  +G  + I  +  F      +R
Sbjct: 4  KSITKTELVASIASATGQSQSAVSGVLDSLFSTVSEAVAKGSKVSIPGWIAFEQVATSAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN QT +E+ I   + V   A S LK  +
Sbjct: 64 TGRNPQTGEEISIPAGKRVKVTAGSKLKAAV 94


>gi|294666559|ref|ZP_06731800.1| histone-like protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292603703|gb|EFF47113.1| histone-like protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 122

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 46/81 (56%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L+  ++    +S+ ++ R V  + +EI  +  +G+A+ +  F TF V+++  R G
Sbjct: 33  MNKTELIDGVAAAADISKAEAGRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERTG 92

Query: 65  RNLQTNQEVKIDPRRVVVFKA 85
           RN +T   +KI   +   FKA
Sbjct: 93  RNPKTGDSIKIAASKNPAFKA 113


>gi|91784810|ref|YP_560016.1| integration host factor subunit beta [Burkholderia xenovorans
          LB400]
 gi|123062639|sp|Q13VC5|IHFB_BURXL RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|91688764|gb|ABE31964.1| Integration host factor, beta subunit [Burkholderia xenovorans
          LB400]
          Length = 107

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV  ++  F  L  KD+   V T+ + + ++   G  I+I  F +F + ++ SRV
Sbjct: 1  MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSEALANGHRIEIRGFGSFGLNRRPSRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V +  + V  FK    L++R+
Sbjct: 61 GRNPKSGEKVLVPEKYVPHFKPGKELRERV 90


>gi|327402190|ref|YP_004343028.1| histone family protein DNA-binding protein [Fluviicola taffensis
           DSM 16823]
 gi|327317698|gb|AEA42190.1| histone family protein DNA-binding protein [Fluviicola taffensis
           DSM 16823]
          Length = 96

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D+V  I++E GL R ++ + V      I  S  +G+ + +  F +F VK++  + G
Sbjct: 1   MTKADIVAEIAEETGLERNEAQKAVEAFMTSIKTSLTKGQNVYLRGFGSFIVKERAEKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RN+  N  + I    +  FK +    K  +++++ R
Sbjct: 61  RNISKNTTIIIPAHNIPSFKPA----KTFVEEVKNR 92


>gi|315223284|ref|ZP_07865145.1| DNA-binding protein HU [Streptococcus anginosus F0211]
 gi|319938741|ref|ZP_08013105.1| nucleoid DNA-binding protein [Streptococcus anginosus 1_2_62CV]
 gi|315187716|gb|EFU21470.1| DNA-binding protein HU [Streptococcus anginosus F0211]
 gi|315419709|gb|ADU15824.1| histone-like protein [Streptococcus anginosus SK52]
 gi|319811791|gb|EFW08057.1| nucleoid DNA-binding protein [Streptococcus anginosus 1_2_62CV]
          Length = 91

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F  + +    GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT  E+ I   +V  FKA   LK
Sbjct: 64 PQTGAEITIAASKVPAFKAGKALK 87


>gi|332664549|ref|YP_004447337.1| histone family protein DNA-binding protein [Haliscomenobacter
          hydrossis DSM 1100]
 gi|332333363|gb|AEE50464.1| histone family protein DNA-binding protein [Haliscomenobacter
          hydrossis DSM 1100]
          Length = 108

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 50/87 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          ++DLV +IS++ G+ + D    + T F E+  S   GE + I  F +F +K++  ++GR+
Sbjct: 3  KADLVAAISEKTGVPKVDVLVTLETFFKEVKGSLADGENVYIRGFGSFVIKRRAKKIGRH 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
          ++ N  ++I    +  FK + I  +++
Sbjct: 63 IKKNVAIEIPEHFIPSFKPAKIFVEQV 89


>gi|56460462|ref|YP_155743.1| nucleoid DNA-binding protein, IHF beta subunit [Idiomarina
          loihiensis L2TR]
 gi|81678412|sp|Q5QZ46|IHFB_IDILO RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|56179472|gb|AAV82194.1| Bacterial nucleoid DNA-binding protein, IHF beta subunit
          [Idiomarina loihiensis L2TR]
          Length = 93

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L++ ++ +  L  K     V  +  ++  S  +G+ ++I  F +F +  +  RVG
Sbjct: 1  MTKSELIERLTLKHELPPKQVEASVKEILEQMVQSLSQGKRVEIRGFGSFSLHYRAPRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   V++D + V  FKA   L++R+
Sbjct: 61 RNPKTGDPVELDGKYVPHFKAGKELRERV 89


>gi|296121526|ref|YP_003629304.1| histone family protein DNA-binding protein [Planctomyces
          limnophilus DSM 3776]
 gi|296013866|gb|ADG67105.1| histone family protein DNA-binding protein [Planctomyces
          limnophilus DSM 3776]
          Length = 171

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ ++VK+IS E GL++  +   V   F+ I ++ V    I++ +F  F VK++ +R  
Sbjct: 1  MTKKEIVKAISDEIGLTQLKTKEIVQKTFDAIVETLVADGRIELRNFGVFEVKKRAARKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  +V +  + VV FK    +++++
Sbjct: 61 RNPRTGDKVFVPEKFVVTFKPGKEMEEKV 89


>gi|332520714|ref|ZP_08397176.1| histone family protein DNA-binding protein [Lacinutrix algicola
          5H-3-7-4]
 gi|332044067|gb|EGI80262.1| histone family protein DNA-binding protein [Lacinutrix algicola
          5H-3-7-4]
          Length = 90

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 50/85 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ ++++  G+++  S + +     EI  +  +G+ + +  F ++ V ++ +R G
Sbjct: 1  MNKTDLIDAMAEHAGITKAASKKALECALIEIEGALQKGDRVSLVGFGSWSVSKRAARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN QT + +KI  + VV FKA S L
Sbjct: 61 RNPQTGKTIKIKAKNVVKFKAGSDL 85


>gi|257094466|ref|YP_003168107.1| integration host factor subunit beta [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
 gi|257046990|gb|ACV36178.1| integration host factor, beta subunit [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
          Length = 97

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+SDL+  +++ F  L  KD+   V  +   + ++   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSDLIAQLAERFPQLVAKDADLSVKMILEAMAEALSNGDRIEIRGFGSFALNYRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V +  + V  FKA   L++R+
Sbjct: 61 GRNPKSGEKVNVPEKWVPHFKAGKELRERV 90


>gi|225850239|ref|YP_002730473.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Persephonella marina EX-H1]
 gi|225645148|gb|ACO03334.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Persephonella marina EX-H1]
          Length = 95

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +SDL+  + + F  L +KD    +   F  + D+  +G+ ++I    +F VK K SR 
Sbjct: 1  MKKSDLLNYLIERFPYLKKKDLHTILNGTFEAMTDALSKGDKVEIRGLGSFKVKVKKSRK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T   V++  +RVV FK   +LKK++
Sbjct: 61 ARNPKTGVVVEVPEKRVVHFKMGKVLKKKL 90


>gi|103488110|ref|YP_617671.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256]
 gi|98978187|gb|ABF54338.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256]
          Length = 91

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  SDL  +++   G+S+ D+ ++V  +F  I D+A +GE I ++ F  F VK   +R G
Sbjct: 1  MNNSDLADALAASNGISKSDARKYVDGVFAAIADAAAKGEEISLNGFGKFKVKDSPAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T + ++I   + + F  +  +K ++
Sbjct: 61 RNPSTGETIQIAASKKLTFAPAKAVKDKL 89


>gi|330752075|emb|CBL80585.1| histone-like bacterial DNA-binding protein [uncultured
          Leeuwenhoekiella sp.]
          Length = 90

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 49/85 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+ ++++  G+++  + + + +    +  S   G+ + +  F ++ V Q+ +R G
Sbjct: 1  MNKSDLIDAMAESAGITKAAAKKALESFLGNVEKSLKSGDRVSLVGFGSWSVSQRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN QT + ++I  + VV FKA S L
Sbjct: 61 RNPQTGKTIQIAAKNVVKFKAGSDL 85


>gi|331092508|ref|ZP_08341330.1| DNA-binding protein HU [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330400729|gb|EGG80332.1| DNA-binding protein HU [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 91

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   LS+KD+ + +      + +   +GE I++  F TF V ++ +R G
Sbjct: 1  MNKTELITAVAENAELSKKDAEKALKAFVEVVTEELKKGEKIQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + + I   +V  FK    LK
Sbjct: 61 RNPQTGKTMSIAACKVPKFKVGKALK 86


>gi|154483310|ref|ZP_02025758.1| hypothetical protein EUBVEN_01011 [Eubacterium ventriosum ATCC
           27560]
 gi|149735820|gb|EDM51706.1| hypothetical protein EUBVEN_01011 [Eubacterium ventriosum ATCC
           27560]
          Length = 112

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 48/86 (55%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++ + +I++E GLS+ D+ + V    + + +   +GE I++  F TF V ++  R G
Sbjct: 23  MNKTEFIAAIAEEAGLSKTDAAKAVKAFTDVVVEEMKKGEKIQLVGFGTFEVSKRPERQG 82

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILK 90
            N  T +++ I    V  FKA + LK
Sbjct: 83  INPATKEKITIAAANVPKFKAGAGLK 108


>gi|296159961|ref|ZP_06842781.1| integration host factor, beta subunit [Burkholderia sp. Ch1-1]
 gi|295889707|gb|EFG69505.1| integration host factor, beta subunit [Burkholderia sp. Ch1-1]
          Length = 107

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV  ++  F  L  KD+   V T+ + + ++   G  I+I  F +F + ++ SRV
Sbjct: 1  MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSEALANGHRIEIRGFGSFGLNRRPSRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V +  + V  FK    L++R+
Sbjct: 61 GRNPKSGEKVLVPEKYVPHFKPGKELRERV 90


>gi|190573025|ref|YP_001970870.1| putative DNA-binding protein HU-beta [Stenotrophomonas
          maltophilia K279a]
 gi|190010947|emb|CAQ44556.1| putative DNA-binding protein HU-beta [Stenotrophomonas
          maltophilia K279a]
          Length = 90

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   L++ +S+R V  +   I  +   G+A+ +  F TF V+ + +R G
Sbjct: 1  MNKTELIDAVAEAADLTKAESSRAVDAVVAAITKALKDGDAVTLVGFGTFQVRDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   +KI   +   FKA   LK  +
Sbjct: 61 RNPKTGDTIKIAASKNPSFKAGKALKDAV 89


>gi|253990888|ref|YP_003042244.1| DNA-binding protein HU-beta [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253782338|emb|CAQ85502.1| DNA-binding protein HU-beta (NS1) (HU-1) [Photorhabdus
          asymbiotica]
          Length = 99

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R V    + +  +   G+ + +  F TF V+++ +R G
Sbjct: 6  VNKSQLIDKIAADSNISKAAAGRVVDAFISSVTGALKDGDDVALVGFGTFAVRERSARTG 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI   +V  F+    LK  +
Sbjct: 66 RNPQTGKELKIAAAKVPAFRPGKSLKDAV 94


>gi|229073027|ref|ZP_04206221.1| DNA-binding protein HU 1 [Bacillus cereus F65185]
 gi|228710145|gb|EEL62125.1| DNA-binding protein HU 1 [Bacillus cereus F65185]
          Length = 93

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 43/71 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          I +++L K ++++  L +KD      T+ + I ++   GE ++I  F TF V+++ +R G
Sbjct: 4  INKTELTKVVAEKTELIQKDPVAATQTVLDTITNALANGEKVQILGFGTFEVREQSARTG 63

Query: 65 RNLQTNQEVKI 75
           N QT +E++I
Sbjct: 64 HNPQTGEEMQI 74


>gi|169335876|ref|ZP_02863069.1| hypothetical protein ANASTE_02309 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258614|gb|EDS72580.1| hypothetical protein ANASTE_02309 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 90

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV ++S++ GL++K+    +      I ++  + + + +  F TF VK++  R G
Sbjct: 1  MNKSELVSALSEKTGLTKKECDNCLGAFIETITETLQKQDKVSLVGFGTFEVKERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N QT +++ I      VFKA   LK
Sbjct: 61 INPQTKEKITIPASNAPVFKAGKALK 86


>gi|325285938|ref|YP_004261728.1| histone family protein DNA-binding protein [Cellulophaga lytica
          DSM 7489]
 gi|324321392|gb|ADY28857.1| histone family protein DNA-binding protein [Cellulophaga lytica
          DSM 7489]
          Length = 96

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 43/85 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  IS + G+ + D    V T   E+  S   G+ + +  F +F +K +  + G
Sbjct: 1  MTKADIVSKISDKLGIEKGDVQATVETFMEEVKTSLENGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  +KI    +  FK + + 
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVF 85


>gi|323698417|ref|ZP_08110329.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          ND132]
 gi|323458349|gb|EGB14214.1| histone family protein DNA-binding protein [Desulfovibrio
          desulfuricans ND132]
          Length = 90

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  I+++ G S+  +   +  + + I D    G  + ++ F TF V ++ +R G
Sbjct: 1  MTKAELVAKIAEKIGTSKAQAEASMNAILDTIQDELAAGNKLTLTGFGTFSVSERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   + I   +V  FK   +LK
Sbjct: 61 RNPRTGTALNIPACKVAQFKPGKVLK 86


>gi|315419717|gb|ADU15828.1| histone-like protein [Streptococcus anginosus]
          Length = 91

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F  + +    GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT  E+ I   +V  FKA   LK
Sbjct: 64 PQTGAEITIAASKVPTFKAGKALK 87


>gi|253700777|ref|YP_003021966.1| histone family protein DNA-binding protein [Geobacter sp. M21]
 gi|251775627|gb|ACT18208.1| histone family protein DNA-binding protein [Geobacter sp. M21]
          Length = 91

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++S++ +  LS K +   V  +F  + D+ + G+ I+I  F +F VK+  +  G
Sbjct: 1  MNKSELIESLAAKKTLSFKKAEEVVNAVFASMTDALLSGDRIEIRGFGSFVVKEYDAYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + +  +++  FK    LK+++
Sbjct: 61 RNPKTGESISVKAKKLPFFKVGKELKEKV 89


>gi|148555324|ref|YP_001262906.1| histone family protein DNA-binding protein [Sphingomonas
          wittichii RW1]
 gi|148500514|gb|ABQ68768.1| histone family protein DNA-binding protein [Sphingomonas
          wittichii RW1]
          Length = 92

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+LV+ +S++   LS K+  + V+TLF+ I      G  +++  F  F  + + +R+
Sbjct: 1  MIRSELVQLLSQDNPDLSPKEVEKIVSTLFDAITKRLAEGGRVELRGFGAFSTRARDARI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  +RV  FK    ++ R+
Sbjct: 61 GRNPRTGDTVPVSAKRVPYFKPGKEMRVRL 90


>gi|256394110|ref|YP_003115674.1| histone family protein DNA-binding protein [Catenulispora
           acidiphila DSM 44928]
 gi|256360336|gb|ACU73833.1| histone family protein DNA-binding protein [Catenulispora
           acidiphila DSM 44928]
          Length = 167

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 49/106 (46%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++DL   ++++   +  D+ ++V  +F+ I      GE ++I  F TF   Q+ +R+G
Sbjct: 2   VNKADLAAEVAEQMSGAEPDARQYVDAVFDVIMRHVAAGERVQILGFGTFDSVQRAARLG 61

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSP 110
           RN QT   +++       F A    + R+ +          DV  P
Sbjct: 62  RNPQTGAAIQVPAGTSPRFHAGQTFRTRVAEASAVPAEASQDVAKP 107


>gi|163756383|ref|ZP_02163497.1| fumarate hydratase [Kordia algicida OT-1]
 gi|161323735|gb|EDP95070.1| fumarate hydratase [Kordia algicida OT-1]
          Length = 101

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 54/92 (58%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S  + +++L+ +++ + G+S+  + + + +    +  +  +G+ + +  F ++ V ++ +
Sbjct: 9   STIMNKTELIDAMAADAGISKAAAKKSLESFLGNVEGALKKGDRVSLVGFGSWSVSERAA 68

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R GRN QT + ++I  ++VV FKA S L K +
Sbjct: 69  REGRNPQTGKTIQIAAKKVVKFKAGSDLGKAV 100


>gi|197286600|ref|YP_002152472.1| DNA-binding protein HU-alpha (HU-2) [Proteus mirabilis HI4320]
 gi|226328707|ref|ZP_03804225.1| hypothetical protein PROPEN_02602 [Proteus penneri ATCC 35198]
 gi|227355207|ref|ZP_03839616.1| DNA-binding protein HU-alpha (HU-2) [Proteus mirabilis ATCC
          29906]
 gi|194684087|emb|CAR45470.1| DNA-binding protein HU-alpha (HU-2) [Proteus mirabilis HI4320]
 gi|225201893|gb|EEG84247.1| hypothetical protein PROPEN_02602 [Proteus penneri ATCC 35198]
 gi|227164716|gb|EEI49570.1| DNA-binding protein HU-alpha (HU-2) [Proteus mirabilis ATCC
          29906]
          Length = 90

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L +S++++  L++  +   +    + +  +   G+++++  F TF V  +  R G
Sbjct: 1  MNKAELTESVAEKADLTKTQAKAAIEAFIDSVTGALKEGDSVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F A   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFTAGKALKDAV 89


>gi|91775765|ref|YP_545521.1| histone-like DNA-binding protein [Methylobacillus flagellatus KT]
 gi|91709752|gb|ABE49680.1| histone-like DNA-binding protein [Methylobacillus flagellatus KT]
          Length = 91

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +S+L++ I+K  GLS+  + R +      I  S  +GE + +  F TF+V ++ +R GRN
Sbjct: 4  KSELIEQIAKSAGLSKAAAGRALDATTAAITKSLKKGELVTLIGFGTFYVGKRAARNGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           +T   +KI       F+A   LK
Sbjct: 64 PRTGATIKIKAANSPKFRAGKALK 87


>gi|73543074|ref|YP_297594.1| HU family DNA-binding protein [Ralstonia eutropha JMP134]
 gi|72120487|gb|AAZ62750.1| HU family DNA-binding protein [Ralstonia eutropha JMP134]
          Length = 92

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++L+ +I+    GL++  + + +    + I D+   G+ + +  F TF   ++G R+
Sbjct: 1  MTKTELIDAIAAGVDGLTKAKAEQALNVTLSAIMDAVANGDTLSLVGFGTFSKGERGERM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T +E+K++  + V FKA    K  +
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAV 90


>gi|22536684|ref|NP_687535.1| DNA-binding protein HU [Streptococcus agalactiae 2603V/R]
 gi|25010620|ref|NP_735015.1| DNA-binding protein HU [Streptococcus agalactiae NEM316]
 gi|76786815|ref|YP_329238.1| DNA-binding protein HU [Streptococcus agalactiae A909]
 gi|77405315|ref|ZP_00782411.1| DNA-binding protein HU [Streptococcus agalactiae H36B]
 gi|77414015|ref|ZP_00790187.1| DNA-binding protein HU [Streptococcus agalactiae 515]
 gi|22533525|gb|AAM99407.1|AE014215_1 DNA-binding protein HU [Streptococcus agalactiae 2603V/R]
 gi|23094974|emb|CAD46195.1| HU like DNA-binding protein [Streptococcus agalactiae NEM316]
 gi|76561872|gb|ABA44456.1| DNA-binding protein HU [Streptococcus agalactiae A909]
 gi|77159941|gb|EAO71080.1| DNA-binding protein HU [Streptococcus agalactiae 515]
 gi|77176110|gb|EAO78883.1| DNA-binding protein HU [Streptococcus agalactiae H36B]
 gi|319744552|gb|EFV96905.1| DNA-binding protein HU [Streptococcus agalactiae ATCC 13813]
          Length = 91

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F  + D    GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVDAVFAAVADYLAEGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT  E++I   +V  FKA   LK
Sbjct: 64 PQTGAEIEIAASKVPAFKAGKALK 87


>gi|315127186|ref|YP_004069189.1| DNA-binding protein [Pseudoalteromonas sp. SM9913]
 gi|315015700|gb|ADT69038.1| DNA-binding protein [Pseudoalteromonas sp. SM9913]
          Length = 90

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R + +    +  +   G+++ +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDQIAADADISKAAAGRALDSFIESVSGALKDGDSVALVGFGTFSVRERAARAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I    +  FKA   LK  +
Sbjct: 61 RNPQTGETIQIAAANIPAFKAGKALKDAV 89


>gi|145629383|ref|ZP_01785181.1| integration host factor alpha-subunit [Haemophilus influenzae
          22.1-21]
 gi|144978226|gb|EDJ87990.1| integration host factor alpha-subunit [Haemophilus influenzae
          22.1-21]
          Length = 91

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 38/63 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+ D+++ +S ++ LS++D+   V     EI  S   G+ +K+S F  F ++ K SR 
Sbjct: 3  TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRSSLESGQDVKLSGFGNFELRDKSSRP 62

Query: 64 GRN 66
          GRN
Sbjct: 63 GRN 65


>gi|257463308|ref|ZP_05627706.1| histone family protein DNA-binding protein [Fusobacterium sp.
          D12]
 gi|317060887|ref|ZP_07925372.1| DNA-binding protein HU [Fusobacterium sp. D12]
 gi|313686563|gb|EFS23398.1| DNA-binding protein HU [Fusobacterium sp. D12]
          Length = 93

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V +++K+  ++ K++ R +      + +S V G  +K   F T+  K++ +R  
Sbjct: 1  MTKKEFVAALAKKAEVTGKEADRMLKCFLELVEESLVAGNDVKFIGFGTWETKKREARKL 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI  +RVV FK    L  ++
Sbjct: 61 RNPQTGKEMKIAAKRVVKFKVGKALADKV 89


>gi|90407417|ref|ZP_01215601.1| DNA-binding protein [Psychromonas sp. CNPT3]
 gi|90311448|gb|EAS39549.1| DNA-binding protein [Psychromonas sp. CNPT3]
          Length = 91

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  L+ +I++   +S+  ++R +    + +  + V G+ + +  F  F VK + +R G
Sbjct: 1  MNKGQLIDNIAESADISKAAASRALDAFISSVTQALVEGDNVSLIGFGAFTVKDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I   +V  FKA   LK  I
Sbjct: 61 RNPQTGAPIEIKAAKVPAFKAGKSLKDAI 89


>gi|121582539|ref|YP_974071.1| histone family protein DNA-binding protein [Acidovorax sp. JS42]
 gi|309783318|ref|ZP_07678028.1| DNA-binding protein, HU family [Ralstonia sp. 5_7_47FAA]
 gi|330827371|ref|YP_004390609.1| histone family protein DNA-binding protein [Alicycliphilus
          denitrificans K601]
 gi|120608597|gb|ABM44336.1| histone family protein DNA-binding protein [Acidovorax sp. JS42]
 gi|308917862|gb|EFP63549.1| DNA-binding protein, HU family [Ralstonia sp. 5_7_47FAA]
 gi|329312679|gb|AEB87093.1| histone family protein DNA-binding protein [Alicycliphilus
          denitrificans K601]
          Length = 91

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R DL+ +I+++   S+  +TRF+ +L   + +   +G A+K++ F TF      +R G
Sbjct: 1  MNRQDLIDAIAEDTEASKAATTRFLDSLITIVQNEVAKGGAVKLTGFGTFEKAAVAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T   +KI       F   +  K  + D
Sbjct: 61 RNPKTGAPIKIPSTHKPKFTPGATFKDLVKD 91


>gi|164688880|ref|ZP_02212908.1| hypothetical protein CLOBAR_02528 [Clostridium bartlettii DSM
          16795]
 gi|164602084|gb|EDQ95549.1| hypothetical protein CLOBAR_02528 [Clostridium bartlettii DSM
          16795]
          Length = 93

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  ++++  L++K++   +  L   I ++ V G+ +++  F TF  +++ +R G
Sbjct: 1  MNKAELVSRMAEKSELTKKEAEMALNALMESIQEALVSGDKVQLVGFGTFETRERAARKG 60

Query: 65 RNLQT-NQEVKIDPRRVVVFKASSILKKRI 93
          RN +   QE+ I   +  VFKA   LK+ I
Sbjct: 61 RNPRNPQQEIDIPASKAPVFKAGKSLKEAI 90


>gi|302670433|ref|YP_003830393.1| DNA-binding protein [Butyrivibrio proteoclasticus B316]
 gi|302394906|gb|ADL33811.1| DNA-binding protein [Butyrivibrio proteoclasticus B316]
          Length = 92

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+KE GLS+KD+   +    + +     +   +++  F TF   ++ +R G
Sbjct: 1  MNKTELIDAIAKEAGLSKKDAAAALNAFTDTVTKELKKKGKVQLVGFGTFETTKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          +N QT   +KI       FKA   LK
Sbjct: 61 KNPQTGAAIKIPASVAPKFKAGKALK 86


>gi|291166397|gb|EFE28443.1| DNA-binding protein HU [Filifactor alocis ATCC 35896]
          Length = 93

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  ++++  L++KD    +    + + D+ V GE +++  F +F  +++  R G
Sbjct: 1  MNKAELVTKMAEKCNLTKKDMEVALNAFMSCVEDALVAGEKVQLVGFGSFETRERAEREG 60

Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93
          RN ++ +EV KI   +  VFKA   LK+++
Sbjct: 61 RNPRSPEEVIKIPASKAPVFKAGKGLKEKV 90


>gi|328948273|ref|YP_004365610.1| histone family protein DNA-binding protein [Treponema
          succinifaciens DSM 2489]
 gi|328448597|gb|AEB14313.1| histone family protein DNA-binding protein [Treponema
          succinifaciens DSM 2489]
          Length = 108

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK-QKG 60
          SK +T++DL++++ +     +      +  LF+++ +    G  I++  F TF  + +KG
Sbjct: 3  SKKVTKNDLLEAVYQNTKYEKLAVQTIMENLFDQMKEVLKDGNTIELRGFGTFEARLRKG 62

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           +  RN +T Q++ + P  VV F++   LKK + D
Sbjct: 63 RQNARNPKTGQQLSVAPHYVVAFRSGQELKKALWD 97


>gi|258513051|ref|YP_003189308.1| histone-like DNA-binding protein HU [Acetobacter pasteurianus IFO
          3283-01]
 gi|329113763|ref|ZP_08242536.1| DNA-binding protein HU [Acetobacter pomorum DM001]
 gi|256634954|dbj|BAI00929.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-01]
 gi|256638009|dbj|BAI03977.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-03]
 gi|256641063|dbj|BAI07024.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-07]
 gi|256644118|dbj|BAI10072.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-22]
 gi|256647173|dbj|BAI13120.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-26]
 gi|256650226|dbj|BAI16166.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-32]
 gi|256653217|dbj|BAI19150.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-01-42C]
 gi|256656270|dbj|BAI22196.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-12]
 gi|326696919|gb|EGE48587.1| DNA-binding protein HU [Acetobacter pomorum DM001]
          Length = 92

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 44/82 (53%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DL++ I     + +KD+   + T+F  I ++AV+G+   I+ F  F V+Q   R GRN Q
Sbjct: 5  DLIERIVAATDIQKKDAKTALETVFAAITEAAVKGDDTTIAGFGKFVVRQTAERKGRNPQ 64

Query: 69 TNQEVKIDPRRVVVFKASSILK 90
          T  E+ I   R + +  +  +K
Sbjct: 65 TGAELVIPASRKLAYTPAKAVK 86


>gi|160915098|ref|ZP_02077311.1| hypothetical protein EUBDOL_01106 [Eubacterium dolichum DSM 3991]
 gi|158432897|gb|EDP11186.1| hypothetical protein EUBDOL_01106 [Eubacterium dolichum DSM 3991]
          Length = 94

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 45/75 (60%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS+ + +  L +S++++  +++KD+   V T+F EI     +G  ++IS F  F V ++ 
Sbjct: 1  MSEILNKKALAESLAEKLEMTKKDAGVAVDTVFEEITAILAKGGKVEISGFGKFEVAERP 60

Query: 61 SRVGRNLQTNQEVKI 75
           R+G N  T +++KI
Sbjct: 61 ERMGINPATKEQIKI 75


>gi|56460110|ref|YP_155391.1| nucleoid DNA-binding protein HU-beta [Idiomarina loihiensis L2TR]
 gi|56179120|gb|AAV81842.1| Bacterial nucleoid DNA-binding protein HU-beta [Idiomarina
          loihiensis L2TR]
          Length = 90

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R + ++ + + D+  + + + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDSMIDAVTDALKKDDQVALVGFGTFSVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I   +V  FKA   LK  +
Sbjct: 61 RNPQTGETIQIAAAKVPSFKAGKALKDAV 89


>gi|307547003|ref|YP_003899482.1| DNA-binding protein HU-beta [Halomonas elongata DSM 2581]
 gi|307219027|emb|CBV44297.1| K03530 DNA-binding protein HU-beta [Halomonas elongata DSM 2581]
          Length = 91

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 47/87 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L  +I++   LS+  +++ +  + +EI  S   G+ + +  F TF V+++ +R G+N
Sbjct: 3  KPELAAAIAERADLSKDKASQVLNVILDEITGSVSDGKDVSLIGFGTFTVRERAARTGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT + + I   + V FK    LK  +
Sbjct: 63 PQTGEPLTIPASKTVAFKPGKGLKDAV 89


>gi|34540963|ref|NP_905442.1| DNA-binding protein HU [Porphyromonas gingivalis W83]
 gi|188995257|ref|YP_001929509.1| putative DNA-binding protein HU [Porphyromonas gingivalis ATCC
          33277]
 gi|34397278|gb|AAQ66341.1| DNA-binding protein HU [Porphyromonas gingivalis W83]
 gi|188594937|dbj|BAG33912.1| putative DNA-binding protein HU [Porphyromonas gingivalis ATCC
          33277]
          Length = 92

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 49/92 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V +I+K  G+ ++ + + V +  + I DS   G+ + +  F +F VK++  +  
Sbjct: 1  MTKADVVNAIAKSTGIDKETTLKVVESFMDTIKDSLSEGDNVYLRGFGSFIVKERAEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN+     + I  R +  FK S I   ++  D
Sbjct: 61 RNISKQTTIIIPKRNIPAFKPSKIFMSQMKQD 92


>gi|84387165|ref|ZP_00990187.1| DNA-binding protein HU-beta [Vibrio splendidus 12B01]
 gi|84378026|gb|EAP94887.1| DNA-binding protein HU-beta [Vibrio splendidus 12B01]
          Length = 91

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 46/87 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S LV+ I+    +S+  +   +  L   I ++  +G+ + I  F +F V  + +R G
Sbjct: 1  MNKSQLVEHIATSADISKDQAGSALNALVEGISNTLAKGDDVAILGFGSFKVNSRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T +E++I   +   FKA   LK+
Sbjct: 61 RNPRTGEEIQISASKTPAFKAGKALKE 87


>gi|118580201|ref|YP_901451.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
 gi|118502911|gb|ABK99393.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
          Length = 91

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + RS+L++ ++    +S K +   +T +F+ + ++ V+ E I+I    +F +K+  +  G
Sbjct: 1  MNRSELIEHLALRKDISHKRAEEIITLIFSAMTEAMVKNERIEIRGLGSFVIKEYDTYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + + P+++  FK    LK+ ++
Sbjct: 61 RNPKTGEPILVRPKKLPFFKVGKELKEMVI 90


>gi|89886013|ref|YP_516210.1| DNA-binding protein HU-beta [Sodalis phage phiSG1]
 gi|89191748|dbj|BAE80495.1| DNA-binding protein HU-beta [Sodalis phage phiSG1]
 gi|125470043|gb|ABN42235.1| gp28 [Sodalis phage phiSG1]
          Length = 90

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L++++S++  +S+  +   +  + + +  S   G+ +KI+ F TF VK +  R G
Sbjct: 1  MNKSHLIRAVSEKTDISKIKAGFVIDAITDAVTQSLASGDDVKITGFGTFEVKTRAERPG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I   RV  F+A   LK+ +
Sbjct: 61 RNPKTGEAMTIPAARVPAFRARKGLKEAV 89


>gi|118497645|ref|YP_898695.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          novicida U112]
 gi|208779447|ref|ZP_03246793.1| DNA-binding protein HU-beta [Francisella novicida FTG]
 gi|254373011|ref|ZP_04988500.1| hypothetical protein FTCG_00584 [Francisella tularensis subsp.
          novicida GA99-3549]
 gi|118423551|gb|ABK89941.1| DNA-binding protein HU-beta [Francisella novicida U112]
 gi|151570738|gb|EDN36392.1| hypothetical protein FTCG_00584 [Francisella novicida GA99-3549]
 gi|208745247|gb|EDZ91545.1| DNA-binding protein HU-beta [Francisella novicida FTG]
 gi|332678353|gb|AEE87482.1| DNA-binding protein HU-beta [Francisella cf. novicida Fx1]
          Length = 90

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV +I+KE  ++++ ++  +      +  +   G+++ +  F TF VK++  R G
Sbjct: 1  MNKSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSPREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + +KI   +V  FKA   LK  +
Sbjct: 61 RNPKTGETIKIPASKVPSFKAGKGLKDAV 89


>gi|320528391|ref|ZP_08029553.1| DNA-binding protein HU [Solobacterium moorei F0204]
 gi|320131305|gb|EFW23873.1| DNA-binding protein HU [Solobacterium moorei F0204]
          Length = 94

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 52/93 (55%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++T+ +  + + ++++  L++K++   +  +F+ +  +   G  + IS F  F VK + 
Sbjct: 1  MAETLNKKSIAELVAEKHNLTKKEAAEIIDLVFDTVSGTLKDGGRVDISGFGKFEVKTRA 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +R G N QT + + I   +V  FKA+  LK+ +
Sbjct: 61 ARTGINPQTKETITIPESKVPGFKAAKNLKELV 93


>gi|86141624|ref|ZP_01060170.1| DNA-binding protein HU-beta (NS1) (HU-1) [Leeuwenhoekiella
          blandensis MED217]
 gi|85832183|gb|EAQ50638.1| DNA-binding protein HU-beta (NS1) (HU-1) [Leeuwenhoekiella
          blandensis MED217]
          Length = 90

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 50/85 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+ +++++ G+++  + + + +    I  S   G+ + +  F ++ V ++ +R G
Sbjct: 1  MNKSDLIDAMAEDAGITKAAAKKALESFLGNIEKSLKGGDRVSLVGFGSWSVSKRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN QT + ++I  + VV FKA S L
Sbjct: 61 RNPQTGKTIQIAAKNVVKFKAGSDL 85


>gi|295690336|ref|YP_003594029.1| histone family protein DNA-binding protein [Caulobacter segnis
          ATCC 21756]
 gi|295432239|gb|ADG11411.1| histone family protein DNA-binding protein [Caulobacter segnis
          ATCC 21756]
          Length = 92

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 8  SDLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          SDLV  +++ E  L++  +   +  +F  + ++AV+GE + I  F  F V+ K +R GRN
Sbjct: 4  SDLVDAAVAAEPKLTKAQAKALIDGVFKALTEAAVKGEEVSIPGFGKFKVQAKPARTGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
            T   ++I   + V F  +  LK  +
Sbjct: 64 PSTGATIEIAASKKVAFTPAKQLKDAV 90


>gi|302878840|ref|YP_003847404.1| histone family protein DNA-binding protein [Gallionella
          capsiferriformans ES-2]
 gi|302581629|gb|ADL55640.1| histone family protein DNA-binding protein [Gallionella
          capsiferriformans ES-2]
          Length = 90

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDLV +I+    +S+  + R +    N I  +   GE + +  F  F V ++  RVG
Sbjct: 1  MNKSDLVDAIATSADISKAAAGRALDGALNAIKTALKNGEEVSLVGFGAFTVGERAGRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   + I   +V  F+A   LK  +
Sbjct: 61 RNPQTGAAITIKAAKVPKFRAGKGLKDAV 89


>gi|221642274|ref|YP_002533361.1| small DNA-binding protein (bacterial histone-like family)
          [Bacillus cereus Q1]
 gi|228962916|ref|ZP_04124153.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|221243209|gb|ACM15918.1| small DNA-binding protein (bacterial histone-like family)
          [Bacillus cereus Q1]
 gi|228796774|gb|EEM44147.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani
          str. T13001]
          Length = 92

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K ++ +  L++  ++  V  +   I  +   GE +++  F TF V+++ +R G
Sbjct: 1  MNKSELIKQVAIQSELTKPQASLAVDAVLESIQHALQNGEHVQLLGFGTFEVRERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T + + I   +   FKA   LK+ +
Sbjct: 61 RNPHTGEALTIPAGKTPAFKAGKALKEAV 89


>gi|15887688|ref|NP_353369.1| integration host factor subunit beta [Agrobacterium tumefaciens
          str. C58]
 gi|325291772|ref|YP_004277636.1| integration host factor subunit beta [Agrobacterium sp. H13-3]
 gi|24418456|sp|Q8UIF9|IHFB_AGRT5 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|15155245|gb|AAK86154.1| integration host factor, beta subunit [Agrobacterium tumefaciens
          str. C58]
 gi|325059625|gb|ADY63316.1| integration host factor subunit beta [Agrobacterium sp. H13-3]
          Length = 100

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ ++ +   L  +D    V  + +EI D+   G  +++  F  F VK + SR 
Sbjct: 1  MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T + V ++ + V  FK    L++R+   M
Sbjct: 61 GRNPRTGESVFVEEKWVPFFKTGKELRERLNPGM 94


>gi|226358227|ref|YP_002787966.1| DNA-binding protein HU (Histone-like protein) [Deinococcus deserti
           VCD115]
 gi|226319870|gb|ACO47864.1| putative DNA-binding protein HU (Histone-like protein) [Deinococcus
           deserti VCD115]
          Length = 125

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 49/92 (53%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S  + ++ LV+ ++   GL++K S   V+T+   I  +   G+++ +    T  VKQ  +
Sbjct: 34  SNKVAKTQLVEMVADRTGLTKKQSEEAVSTMLESIVGALREGKSVGMPGLGTLSVKQTAA 93

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R G    T+++++I   + V FK +S LK  +
Sbjct: 94  RTGVRPGTSEKIQIPAGKKVAFKVASTLKGNL 125


>gi|167625721|ref|YP_001676015.1| histone family protein DNA-binding protein [Shewanella
          halifaxensis HAW-EB4]
 gi|167355743|gb|ABZ78356.1| histone family protein DNA-binding protein [Shewanella
          halifaxensis HAW-EB4]
          Length = 90

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  +++   L++ ++ R + +    + ++   GE I I  F +F   ++ +R G
Sbjct: 1  MNKTELVAKMAESAELTKAEAARALKSFEVTVAEAMKNGEKISIVGFGSFETTERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I    V  FKA   LK
Sbjct: 61 RNPQTGKEIQIPAATVPKFKAGKTLK 86


>gi|71281140|ref|YP_270448.1| HU family DNA-binding protein [Colwellia psychrerythraea 34H]
 gi|71146880|gb|AAZ27353.1| DNA-binding protein, HU family [Colwellia psychrerythraea 34H]
          Length = 90

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 44/86 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L++ I+    +S+  + R + +    + D    GE + +  F TF V+ + +R G
Sbjct: 1  MNKSQLIEKIAAGADISKAAAGRALDSFIGAVTDELKDGEQVALVGFGTFSVRDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT   ++I   ++  FKA   LK
Sbjct: 61 RNPQTGATIQIAAAKIPSFKAGKALK 86


>gi|88798824|ref|ZP_01114407.1| DNA-binding protein HU [Reinekea sp. MED297]
 gi|88778587|gb|EAR09779.1| DNA-binding protein HU [Reinekea sp. MED297]
          Length = 90

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++    +S+  + R +  + + + ++   G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAVAAAADISKASAGRALDAMVDSVTNALKEGDQVVLVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I   +V  FKA   LK  +
Sbjct: 61 RNPQTGEPIQIAAAKVPGFKAGKALKDAV 89


>gi|317486543|ref|ZP_07945366.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
 gi|316922218|gb|EFV43481.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
          Length = 91

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDST-RFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T++DLV  I  + GL  K +T +F+    + + ++   GE +  + F +F V ++  R 
Sbjct: 1  MTKADLVDKIHAKAGLGTKAATEQFLDAAISVLSETIANGEQVSFTGFGSFKVVERSERK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E  I   RVV F     LK+ +
Sbjct: 61 GRNPRTGEECLIPASRVVKFTPGKALKEAV 90


>gi|167627762|ref|YP_001678262.1| DNA-binding protein HU-beta [Francisella philomiragia subsp.
          philomiragia ATCC 25017]
 gi|241668326|ref|ZP_04755904.1| DNA-binding protein HU-beta [Francisella philomiragia subsp.
          philomiragia ATCC 25015]
 gi|254876859|ref|ZP_05249569.1| DNA-binding protein HU-beta [Francisella philomiragia subsp.
          philomiragia ATCC 25015]
 gi|167597763|gb|ABZ87761.1| DNA-binding protein HU-beta [Francisella philomiragia subsp.
          philomiragia ATCC 25017]
 gi|254842880|gb|EET21294.1| DNA-binding protein HU-beta [Francisella philomiragia subsp.
          philomiragia ATCC 25015]
          Length = 90

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV +I+KE  ++++ ++  +      +  +   G+++ +  F TF VK++ +R G
Sbjct: 1  MNKSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + +KI   +V  FKA   LK  +
Sbjct: 61 RNPKTGETIKIAASKVPSFKAGKGLKDAV 89


>gi|145301241|ref|YP_001144081.1| DNA-binding protein HU-beta [Aeromonas salmonicida subsp.
          salmonicida A449]
 gi|142856018|gb|ABO92333.1| DNA-binding protein HU-beta [Aeromonas salmonicida subsp.
          salmonicida A449]
          Length = 90

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+ +I++   +++  +   V  L   I      G ++ ++ F TF V+ + +R G
Sbjct: 1  MNKSDLIMAIAESADITKAKAEAAVNALMATITTELKEGGSVALTGFGTFQVRARAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + +++    +  FKA   LK  +
Sbjct: 61 RNPQTGEAIEVAAANIPSFKAGKSLKDAV 89


>gi|148263975|ref|YP_001230681.1| histone family protein DNA-binding protein [Geobacter
          uraniireducens Rf4]
 gi|146397475|gb|ABQ26108.1| bacterial nucleoid protein Hbs [Geobacter uraniireducens Rf4]
          Length = 91

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV ++++  G+++ D+ + V      I D   +G+ + +  F TF   ++ +R G
Sbjct: 1  MTKTDLVNAVAEIAGITKVDAEKSVKAFLEAITDCLTKGDKLTLVGFGTFSTAKRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          +N QT +++ I       FKA + LK
Sbjct: 61 QNPQTGKKIDIPASVNPKFKAGNTLK 86


>gi|217968881|ref|YP_002354115.1| histone family protein DNA-binding protein [Thauera sp. MZ1T]
 gi|217506208|gb|ACK53219.1| histone family protein DNA-binding protein [Thauera sp. MZ1T]
          Length = 91

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + + V++++    + R  + R ++ + + I +   +GE +  + F +F V Q+ +R G
Sbjct: 1  MNKGEFVEALADRLDVHRAQADRALSAVLDIIAEQLAKGEKVAFTGFGSFEVSQRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I    V  F A + LK  +
Sbjct: 61 RNPQTGATIEIAASSVPKFTAGATLKASV 89


>gi|329906686|ref|ZP_08274482.1| Integration host factor beta subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547181|gb|EGF32042.1| Integration host factor beta subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 92

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 20  LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
           L  KD+   V T+ + + D+   G+ I+I  F +F +  +  R+GRN ++ ++V +  +R
Sbjct: 8   LVAKDADYAVKTILDAMIDALATGQRIEIRGFGSFSLNSRPPRIGRNPKSGEKVMVPEKR 67

Query: 80  VVVFKASSILKKRIMDDMRGRKCNKD 105
           V  FK    L++R+ D M G+   +D
Sbjct: 68  VPHFKPGKELRERV-DAMVGQPIIED 92


>gi|309775495|ref|ZP_07670496.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 3_1_53]
 gi|313897383|ref|ZP_07830926.1| DNA-binding protein HU 1 [Clostridium sp. HGF2]
 gi|308916753|gb|EFP62492.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 3_1_53]
 gi|312957753|gb|EFR39378.1| DNA-binding protein HU 1 [Clostridium sp. HGF2]
          Length = 94

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 46/75 (61%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS+ + +  LV+ ++++  +++KD+T  V T+F+EI  +   G  + IS F  F + ++ 
Sbjct: 1  MSEILNKKALVEVVAEKLEMTKKDATVAVETVFDEIAKTLSEGGKVDISGFGKFEISERP 60

Query: 61 SRVGRNLQTNQEVKI 75
          +R+G N  T + ++I
Sbjct: 61 ARMGINPATKEPLEI 75


>gi|86749688|ref|YP_486184.1| histone-like DNA-binding protein [Rhodopseudomonas palustris HaA2]
 gi|86572716|gb|ABD07273.1| Histone-like DNA-binding protein [Rhodopseudomonas palustris HaA2]
          Length = 103

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T   L  ++++E  LS+K +   +  L   I     +GE I+I       V+++ +R 
Sbjct: 14  TVTLKHLAAALAEEHELSKKQTEAILGDLVGRITKHLKKGERIRIVGLGILQVRKRAART 73

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN  T + ++I   + V F+A+  LK+ I
Sbjct: 74  GRNPATGETIQIKASKKVAFRAAKELKEAI 103


>gi|37527726|ref|NP_931071.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photorhabdus luminescens
          subsp. laumondii TTO1]
 gi|36787162|emb|CAE16238.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photorhabdus luminescens
          subsp. laumondii TTO1]
          Length = 91

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R V    + +  +   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAADSNISKAAAGRVVDAFISSVTGALKDGDDVALVGFGTFAVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI   +V  F+    LK  +
Sbjct: 61 RNPQTGKELKIAAAKVPAFRPGKGLKDAV 89


>gi|58979367|gb|AAW83348.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979385|gb|AAW83357.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979387|gb|AAW83358.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979389|gb|AAW83359.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979391|gb|AAW83360.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979397|gb|AAW83363.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979421|gb|AAW83375.1| DNA-binding protein HU [Campylobacter jejuni]
          Length = 98

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+T     + + I D   +G++I    F TF  +++ +R  
Sbjct: 1  MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R   T + +K+   RV  FK    LK+ +
Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNLKEAV 89


>gi|224537593|ref|ZP_03678132.1| hypothetical protein BACCELL_02473 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224520790|gb|EEF89895.1| hypothetical protein BACCELL_02473 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 90

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 44/80 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++ E GL++ DS + +      I  +   G+ + +  F TF V ++ +R+G
Sbjct: 1  MNKSELINAMAAESGLTKTDSKKALDAFMAAITKALKAGDKVSLVGFGTFVVAERAARLG 60

Query: 65 RNLQTNQEVKIDPRRVVVFK 84
           N  T Q + I  +RV  FK
Sbjct: 61 INPSTKQSITIPAKRVAKFK 80


>gi|227820609|ref|YP_002824579.1| integration host factor subunit beta [Sinorhizobium fredii NGR234]
 gi|227339608|gb|ACP23826.1| integration host factor, beta subunit [Sinorhizobium fredii NGR234]
          Length = 125

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 5   ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV+ ++ +   L  +D    V  + +EI D+   G  +++  F  F VK + SR 
Sbjct: 26  VIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 85

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T   V ++ + V  FK    L++R+   M  R
Sbjct: 86  GRNPRTGDSVFVEEKWVPFFKTGKELRERLNPGMNDR 122


>gi|225874874|ref|YP_002756333.1| DNA-binding protein HU 1 [Acidobacterium capsulatum ATCC 51196]
 gi|225793630|gb|ACO33720.1| DNA-binding protein HU 1 [Acidobacterium capsulatum ATCC 51196]
          Length = 89

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + D++  + +  GL R  +   V T+F  +  +   G+ I++  F  F+V+ + + +G
Sbjct: 1  MIKQDIIHHVIERTGLPRTKAEHAVDTVFESLKHALAEGQRIELRGFGVFNVRPRKTGIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T  EV I P + V FK    L   I+D
Sbjct: 61 RNPRTGTEVSITPGKAVRFKPGKDL--HILD 89


>gi|320156966|ref|YP_004189345.1| DNA-binding protein HU-beta [Vibrio vulnificus MO6-24/O]
 gi|319932278|gb|ADV87142.1| DNA-binding protein HU-beta [Vibrio vulnificus MO6-24/O]
          Length = 90

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+SI+    +S+  + R +      +  +   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVESIAANADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E++I   +V  FKA   LK
Sbjct: 61 RNPKTGEEIQIAEAKVPSFKAGKALK 86


>gi|212709793|ref|ZP_03317921.1| hypothetical protein PROVALCAL_00841 [Providencia alcalifaciens
          DSM 30120]
 gi|212687604|gb|EEB47132.1| hypothetical protein PROVALCAL_00841 [Providencia alcalifaciens
          DSM 30120]
          Length = 95

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + S++  LS K     V  +   + D+   GE I++  F +F +  +  RV
Sbjct: 1  MTKSELIERLASQQSHLSAKTVEEAVKEILEHMADTLAEGERIEVRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  +V+++ + V  FK    L+ R+
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRV 90


>gi|254294703|ref|YP_003060726.1| integration host factor subunit beta [Hirschia baltica ATCC
          49814]
 gi|254043234|gb|ACT60029.1| integration host factor, beta subunit [Hirschia baltica ATCC
          49814]
          Length = 99

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSR-KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L+  +S+E    R ++  R V  + +EI  +   G+ +++  F  F V+Q+ +R 
Sbjct: 1  MLRSELILRLSEERPEIRPREVERIVDVILDEIAAALEAGDRVELRGFGAFSVRQREART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FKA   L+ R+
Sbjct: 61 GRNPRTGESVPVEQKFVPFFKAGKELRARL 90


>gi|15597001|ref|NP_250495.1| DNA-binding protein HU [Pseudomonas aeruginosa PAO1]
 gi|116049754|ref|YP_791439.1| DNA-binding protein HU [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152988765|ref|YP_001348851.1| DNA-binding protein HU [Pseudomonas aeruginosa PA7]
 gi|218892242|ref|YP_002441109.1| DNA-binding protein HU [Pseudomonas aeruginosa LESB58]
 gi|254234898|ref|ZP_04928221.1| DNA-binding protein HU [Pseudomonas aeruginosa C3719]
 gi|254240197|ref|ZP_04933519.1| DNA-binding protein HU [Pseudomonas aeruginosa 2192]
 gi|296389805|ref|ZP_06879280.1| DNA-binding protein HU [Pseudomonas aeruginosa PAb1]
 gi|313110501|ref|ZP_07796386.1| DNA-binding protein HU [Pseudomonas aeruginosa 39016]
 gi|12643997|sp|P05384|DBHB_PSEAE RecName: Full=DNA-binding protein HU-beta
 gi|9947787|gb|AAG05193.1|AE004606_7 DNA-binding protein HU [Pseudomonas aeruginosa PAO1]
 gi|115584975|gb|ABJ10990.1| DNA-binding protein HU [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126166829|gb|EAZ52340.1| DNA-binding protein HU [Pseudomonas aeruginosa C3719]
 gi|126193575|gb|EAZ57638.1| DNA-binding protein HU [Pseudomonas aeruginosa 2192]
 gi|150963923|gb|ABR85948.1| DNA-binding protein HU [Pseudomonas aeruginosa PA7]
 gi|218772468|emb|CAW28250.1| DNA-binding protein HU [Pseudomonas aeruginosa LESB58]
 gi|310882888|gb|EFQ41482.1| DNA-binding protein HU [Pseudomonas aeruginosa 39016]
          Length = 90

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  +   +  +   G+++ +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + +KI   ++  FKA   LK  +
Sbjct: 61 RNPQTGKPIKIAAAKIPGFKAGKALKDAV 89


>gi|320540340|ref|ZP_08039992.1| putative HU, DNA-binding transcriptional regulator, beta subunit
          [Serratia symbiotica str. Tucson]
 gi|320029660|gb|EFW11687.1| putative HU, DNA-binding transcriptional regulator, beta subunit
          [Serratia symbiotica str. Tucson]
          Length = 90

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + DS   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIATGADISKAVAGRALDAVIVSVTDSLKAGDDVALVGFGTFTVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F+A+  LK  +
Sbjct: 61 RNPQTGKEITIAAAKVPAFRAAKALKDAV 89


>gi|160947371|ref|ZP_02094538.1| hypothetical protein PEPMIC_01305 [Parvimonas micra ATCC 33270]
 gi|158446505|gb|EDP23500.1| hypothetical protein PEPMIC_01305 [Parvimonas micra ATCC 33270]
          Length = 92

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 53/88 (60%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ S++++  +++ D+ R +      + ++ V+GE +++  F TF  +++ +R G
Sbjct: 1  MNKSELLASMAEKGKITKVDAERALNAFIQTVEETLVKGEKVQLVGFGTFEARERKARSG 60

Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKK 91
          RN +  +EV KI   +  VFKA   LK+
Sbjct: 61 RNPRNPKEVIKIPASKAPVFKAGKSLKE 88


>gi|298368498|ref|ZP_06979816.1| DNA-binding protein HU-beta [Neisseria sp. oral taxon 014 str.
          F0314]
 gi|298282501|gb|EFI23988.1| DNA-binding protein HU-beta [Neisseria sp. oral taxon 014 str.
          F0314]
          Length = 91

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I+ E  LS++ +  FV    + +      G  + +  F TFH  Q   R G
Sbjct: 1  MNKSELIQAIADEAELSKRAAAEFVDAFVSVVTQELKDGNDVTLVGFGTFHTAQSAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I  R+   F+    LK  +
Sbjct: 61 RNPKTGEPLTIAARKTPKFRPGKALKDAV 89


>gi|85058652|ref|YP_454354.1| transcriptional regulator HU subunit beta [Sodalis glossinidius
          str. 'morsitans']
 gi|84779172|dbj|BAE73949.1| DNA-binding protein HU-beta [Sodalis glossinidius str.
          'morsitans']
          Length = 90

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + +S  +G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIGSVTESLQQGDDVALVGFGTFTVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F+A   LK  +
Sbjct: 61 RNPQTGKEITIAAAKVPGFRAGKGLKDAV 89


>gi|116748864|ref|YP_845551.1| histone family protein DNA-binding protein [Syntrophobacter
          fumaroxidans MPOB]
 gi|116697928|gb|ABK17116.1| histone family protein DNA-binding protein [Syntrophobacter
          fumaroxidans MPOB]
          Length = 96

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+++++K  G++ K +   V   F  + ++ +R + ++I  F +F VK      G
Sbjct: 1  MTKSELIETLAKAEGITLKAAETAVNVAFQSMENALIRSDRLEIRGFGSFKVKNYEGYKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + ++++ +++  FK    LK+R+
Sbjct: 61 RNPKTGELIEVNSKKLPFFKVGKELKERV 89


>gi|284006424|emb|CBA71660.1| DNA-binding protein HU-beta [Arsenophonus nasoniae]
          Length = 100

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 4/98 (4%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           ++ + +LV+ I+KE   ++  +   +      +  +  +G+ +++  F TF VKQ+ +R 
Sbjct: 5   SVKKKELVEKIAKESKAAKSVAESVLNAFLKTVSQTLKKGDKVQLIGFGTFEVKQRAARN 64

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T + +KI   +V  FKA   LK    D + G K
Sbjct: 65  GRNPKTGKVIKIAAAKVPSFKAGQGLK----DTVNGHK 98


>gi|254420538|ref|ZP_05034262.1| DNA-binding protein HU [Brevundimonas sp. BAL3]
 gi|196186715|gb|EDX81691.1| DNA-binding protein HU [Brevundimonas sp. BAL3]
          Length = 92

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 47/88 (53%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+++L+ +++K+ G+S+ D+ + +T +   I  S   G  ++IS+   F    +  R GR
Sbjct: 3  TQAELIAAVAKDAGVSQADAGKVLTAIVENIHASLKAGGDVRISNLGVFDTAARAEREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93
          N  T   +KI   + V F+ S  LK  +
Sbjct: 63 NPATGATIKIAASKAVRFRVSKPLKDAV 90


>gi|57237741|ref|YP_178989.1| DNA-binding protein HU [Campylobacter jejuni RM1221]
 gi|121613433|ref|YP_001000587.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni
          81-176]
 gi|148926594|ref|ZP_01810276.1| DNA-binding protein HU like protein [Campylobacter jejuni subsp.
          jejuni CG8486]
 gi|153951444|ref|YP_001398017.1| DNA-binding protein HU [Campylobacter jejuni subsp. doylei
          269.97]
 gi|157415169|ref|YP_001482425.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 81116]
 gi|167005518|ref|ZP_02271276.1| DNA-binding protein HU-like protein [Campylobacter jejuni subsp.
          jejuni 81-176]
 gi|205356397|ref|ZP_03223162.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni
          CG8421]
 gi|218562532|ref|YP_002344311.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni NCTC
          11168]
 gi|9789717|sp|Q46121|DBH_CAMJE RecName: Full=DNA-binding protein HU; AltName: Full=HCj
 gi|81675587|sp|Q5HUP6|DBH_CAMJR RecName: Full=DNA-binding protein HU
 gi|409577|gb|AAA60954.1| hupB [Campylobacter jejuni]
 gi|57166545|gb|AAW35324.1| DNA-binding protein HU [Campylobacter jejuni RM1221]
 gi|58979331|gb|AAW83330.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979333|gb|AAW83331.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979337|gb|AAW83333.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979341|gb|AAW83335.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979343|gb|AAW83336.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979345|gb|AAW83337.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979359|gb|AAW83344.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979361|gb|AAW83345.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979369|gb|AAW83349.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979371|gb|AAW83350.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979375|gb|AAW83352.1| DNA-binding protein HU [Campylobacter jejuni subsp. doylei]
 gi|58979405|gb|AAW83367.1| DNA-binding protein HU [Campylobacter jejuni subsp. doylei]
 gi|58979411|gb|AAW83370.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979415|gb|AAW83372.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979417|gb|AAW83373.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979419|gb|AAW83374.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979435|gb|AAW83382.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979439|gb|AAW83384.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979441|gb|AAW83385.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979443|gb|AAW83386.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979445|gb|AAW83387.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979447|gb|AAW83388.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979449|gb|AAW83389.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979451|gb|AAW83390.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979453|gb|AAW83391.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979455|gb|AAW83392.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979457|gb|AAW83393.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979459|gb|AAW83394.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979461|gb|AAW83395.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979485|gb|AAW83407.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|112360238|emb|CAL35033.1| DNA-binding protein HU homolog [Campylobacter jejuni subsp.
          jejuni NCTC 11168]
 gi|121504251|gb|ABM55258.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni
          81-176]
 gi|145845288|gb|EDK22382.1| DNA-binding protein HU like protein [Campylobacter jejuni subsp.
          jejuni CG8486]
 gi|152938890|gb|ABS43631.1| DNA-binding protein HU [Campylobacter jejuni subsp. doylei
          269.97]
 gi|157386133|gb|ABV52448.1| DNA-binding protein HU-like protein [Campylobacter jejuni subsp.
          jejuni 81116]
 gi|205345782|gb|EDZ32420.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni
          CG8421]
 gi|284926146|gb|ADC28498.1| DNA-binding protein HU-like protein [Campylobacter jejuni subsp.
          jejuni IA3902]
 gi|307747812|gb|ADN91082.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni M1]
 gi|315058353|gb|ADT72682.1| DNA-binding protein HU-beta [Campylobacter jejuni subsp. jejuni
          S3]
 gi|315927538|gb|EFV06871.1| DNA-binding protein HU 1 [Campylobacter jejuni subsp. jejuni
          DFVF1099]
 gi|315929859|gb|EFV09022.1| DNA-binding protein [Campylobacter jejuni subsp. jejuni 305]
 gi|315932606|gb|EFV11537.1| DNA-binding protein HU 1 [Campylobacter jejuni subsp. jejuni 327]
          Length = 98

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+T     + + I D   +G++I    F TF  +++ +R  
Sbjct: 1  MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R   T + +K+   RV  FK    LK+ +
Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNLKEAV 89


>gi|284040813|ref|YP_003390743.1| histone family protein DNA-binding protein [Spirosoma linguale
          DSM 74]
 gi|283820106|gb|ADB41944.1| histone family protein DNA-binding protein [Spirosoma linguale
          DSM 74]
          Length = 100

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D++  IS + G+ + + T  + T F+ + DS   GE I +  F +F  K++  +V 
Sbjct: 1  MTKADVIAEISDKTGIDKAEVTNTLETFFSVVKDSLAEGENIYVRGFGSFINKKRAKKVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN+  N  + ID   +  FK + +  +++
Sbjct: 61 RNISKNTAMVIDEHFIPSFKPAKVFVEQV 89


>gi|28897694|ref|NP_797299.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus RIMD
          2210633]
 gi|91228614|ref|ZP_01262532.1| DNA-binding protein HU-beta [Vibrio alginolyticus 12G01]
 gi|260366278|ref|ZP_05778734.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus K5030]
 gi|260898293|ref|ZP_05906789.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus Peru-466]
 gi|260901514|ref|ZP_05909909.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ4037]
 gi|262394812|ref|YP_003286666.1| DNA-binding protein HU-beta [Vibrio sp. Ex25]
 gi|269965577|ref|ZP_06179691.1| DNA-binding protein HU-beta [Vibrio alginolyticus 40B]
 gi|28805907|dbj|BAC59183.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus RIMD
          2210633]
 gi|91187846|gb|EAS74160.1| DNA-binding protein HU-beta [Vibrio alginolyticus 12G01]
 gi|262338406|gb|ACY52201.1| DNA-binding protein HU-beta [Vibrio sp. Ex25]
 gi|269829802|gb|EEZ84037.1| DNA-binding protein HU-beta [Vibrio alginolyticus 40B]
 gi|308088436|gb|EFO38131.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus Peru-466]
 gi|308110870|gb|EFO48410.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ4037]
 gi|308114045|gb|EFO51585.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus K5030]
 gi|328473323|gb|EGF44171.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus 10329]
          Length = 90

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I++   +S+  + R +      +  +   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVEQIAENADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E++I   +V  FKA   LK
Sbjct: 61 RNPKTGEEIQIAEAKVPAFKAGKALK 86


>gi|84387738|ref|ZP_00990754.1| Bacterial nucleoid DNA-binding protein [Vibrio splendidus 12B01]
 gi|86148519|ref|ZP_01066807.1| Bacterial nucleoid DNA-binding protein [Vibrio sp. MED222]
 gi|148977891|ref|ZP_01814444.1| bacterial nucleoid DNA-binding protein [Vibrionales bacterium
          SWAT-3]
 gi|84377421|gb|EAP94288.1| Bacterial nucleoid DNA-binding protein [Vibrio splendidus 12B01]
 gi|85833710|gb|EAQ51880.1| Bacterial nucleoid DNA-binding protein [Vibrio sp. MED222]
 gi|145962837|gb|EDK28109.1| bacterial nucleoid DNA-binding protein [Vibrionales bacterium
          SWAT-3]
          Length = 90

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+SI++   +S+  + R +      +  +   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVESIAENADISKASAGRALDAFIEAVGTTLQSGDQVALVGFGTFSVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E++I   +V  FKA   LK
Sbjct: 61 RNPKTGEEIQIAEAKVPGFKAGKALK 86


>gi|189465271|ref|ZP_03014056.1| hypothetical protein BACINT_01617 [Bacteroides intestinalis DSM
          17393]
 gi|189437545|gb|EDV06530.1| hypothetical protein BACINT_01617 [Bacteroides intestinalis DSM
          17393]
          Length = 90

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 44/80 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++ E GL++ DS + +      I  +   G+ + +  F TF V ++ +R+G
Sbjct: 1  MNKSELISAMAAESGLTKADSKKALDAFMASITKALKAGDKVSLVGFGTFAVSERAARLG 60

Query: 65 RNLQTNQEVKIDPRRVVVFK 84
           N  T Q + I  ++V  FK
Sbjct: 61 INPSTKQSITIPAKKVAKFK 80


>gi|188997158|ref|YP_001931409.1| histone family protein DNA-binding protein [Sulfurihydrogenibium
          sp. YO3AOP1]
 gi|237756500|ref|ZP_04585032.1| DNA-binding protein HU 1 [Sulfurihydrogenibium yellowstonense
          SS-5]
 gi|188932225|gb|ACD66855.1| histone family protein DNA-binding protein [Sulfurihydrogenibium
          sp. YO3AOP1]
 gi|237691348|gb|EEP60424.1| DNA-binding protein HU 1 [Sulfurihydrogenibium yellowstonense
          SS-5]
          Length = 98

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 6/93 (6%)

Query: 7  RSDLVKSISK--EFGLSRKDSTRFVTTLFNEICDSAV----RGEAIKISSFATFHVKQKG 60
          R+D+V  I++  +  L +K+    V   F+ I D        G+ + IS F TF +K++ 
Sbjct: 3  RADIVNKIARNEKITLDKKEIATIVNETFDLISDYLTNDIHEGKKVMISGFGTFVIKKRK 62

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          S++GRN +T +E  I  R  + FK   +LKK++
Sbjct: 63 SKIGRNPKTGEEKLIPDRLGITFKPGKLLKKKV 95


>gi|15896458|ref|NP_349807.1| DNA binding protein HU [Clostridium acetobutylicum ATCC 824]
 gi|15026283|gb|AAK81147.1|AE007817_1 DNA binding protein HU [Clostridium acetobutylicum ATCC 824]
 gi|325510616|gb|ADZ22252.1| DNA binding protein HU [Clostridium acetobutylicum EA 2018]
          Length = 91

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ SIS++  L++KD+   +      + ++  + E +++  F TF  +++  R G
Sbjct: 1  MNKAELITSISEKSKLTKKDAEVALKAFIESVEETLEKHEKVQLVGFGTFETRERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN ++ +E+ I    V VFKA    K+R+
Sbjct: 61 RNPRSKEEIVIPASTVPVFKAGKEFKERV 89


>gi|294789887|ref|ZP_06755113.1| DNA-binding protein HU-beta [Simonsiella muelleri ATCC 29453]
 gi|294482177|gb|EFG29878.1| DNA-binding protein HU-beta [Simonsiella muelleri ATCC 29453]
          Length = 90

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K+I+ E GL++  +   +  L   + D    G  + I  F  F+V ++  R+G
Sbjct: 1  MNKAELIKTIATESGLTQTQANDALNALCKVVIDELSIGGEVNIVGFGRFYVAERAERMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T++ V I    V  FKA   LK  +
Sbjct: 61 RNPKTSKPVMIPATCVAKFKAGKTLKDAV 89


>gi|283956256|ref|ZP_06373736.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791976|gb|EFC30765.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 1336]
          Length = 98

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+T     + + I D   +G++I    F TF  +++ +R  
Sbjct: 1  MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R   T + +K+   RV  FK    LK+ +
Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNLKEAV 89


>gi|328676006|gb|AEB28681.1| DNA-binding protein HU-beta [Francisella cf. novicida 3523]
          Length = 90

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV +I+KE  ++++ ++  +      +  +   G+++ +  F TF VK++  R G
Sbjct: 1  MNKSELVSAIAKEADVTKEVASNTLDATIAAVTKALKSGDSVTLVGFGTFQVKERSPREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + +KI   +V  FKA   LK  +
Sbjct: 61 RNPKTGETIKIPASKVPSFKAGKGLKDAV 89


>gi|238751009|ref|ZP_04612505.1| DNA-binding protein HU [Yersinia rohdei ATCC 43380]
 gi|238710699|gb|EEQ02921.1| DNA-binding protein HU [Yersinia rohdei ATCC 43380]
          Length = 90

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + +S   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDEVALVGFGTFAVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F+A   LK  +
Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKGLKDAV 89


>gi|325125586|gb|ADY84916.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp.
          bulgaricus 2038]
          Length = 80

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 41/69 (59%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++LV  ++ +  L++KD +  V  +F  I +   +GE +++  F TF V+  G+R GRN
Sbjct: 4  KAELVSEVAAKTKLTKKDVSEAVDAVFEAIQEDLAKGEKVQLIGFGTFEVRHLGARKGRN 63

Query: 67 LQTNQEVKI 75
           QT  E +I
Sbjct: 64 PQTGAENEI 72


>gi|23009809|ref|ZP_00050720.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magnetotacticum MS-1]
          Length = 99

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 51/90 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ +S+LV +I+ +  LS+ D+ + +      + +S  +GEA+K++   +    ++ +R 
Sbjct: 8  SLNKSELVSAIASKADLSKADAEKALNAFQEVLIESLGKGEAVKVTGLLSVERVERAART 67

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I     V   A S+LKK +
Sbjct: 68 GRNPRTGEEISIPAGYGVKISAGSLLKKAV 97


>gi|323697944|ref|ZP_08109856.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          ND132]
 gi|323457876|gb|EGB13741.1| histone family protein DNA-binding protein [Desulfovibrio
          desulfuricans ND132]
          Length = 91

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K++S++  +   ++T+ V    + + ++ +RG+ ++I  F +F +K      G
Sbjct: 1  MNKSELIKALSEQKKMHVDEATKVVGAFVDSVKEALLRGDRVEIRGFGSFKIKDYEGYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   V++ P+++  F+    LK+ I
Sbjct: 61 RNPKTGTVVQVRPKKLPFFRPGKELKEYI 89


>gi|169824180|ref|YP_001691791.1| DNA binding protein [Finegoldia magna ATCC 29328]
 gi|302380836|ref|ZP_07269299.1| DNA-binding protein HU [Finegoldia magna ACS-171-V-Col3]
 gi|303234932|ref|ZP_07321557.1| DNA-binding protein HU [Finegoldia magna BVS033A4]
 gi|167830985|dbj|BAG07901.1| DNA binding protein [Finegoldia magna ATCC 29328]
 gi|302311331|gb|EFK93349.1| DNA-binding protein HU [Finegoldia magna ACS-171-V-Col3]
 gi|302494050|gb|EFL53831.1| DNA-binding protein HU [Finegoldia magna BVS033A4]
          Length = 96

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ SI+K+  LS+ +S R +      + ++  +GE +++  F TF  +++ +R G
Sbjct: 1  MNKSELLSSIAKKSELSKVESERALNAFIKTVEETLAKGEKVQLVGFGTFESRERKAREG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRI 93
          RN +  +E ++I      VFKA   LK+ +
Sbjct: 61 RNPRNPEEKIQIPASNAPVFKAGKSLKEAV 90


>gi|167569600|ref|ZP_02362474.1| Putative DNA-binding protein HU-alpha, HupA [Burkholderia
          oklahomensis C6786]
          Length = 90

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+++  LS+  + R +  L   + ++  RG A+ +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIARQADLSKSSAARALDALLGGVTNTLQRGGAVTLVGFGTFEVGKRAARGG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          R+ +T   ++I    V  F+A   LK
Sbjct: 61 RDPRTGAAIEIRAANVPKFRAGKALK 86


>gi|166033174|ref|ZP_02236003.1| hypothetical protein DORFOR_02896 [Dorea formicigenerans ATCC
          27755]
 gi|166027531|gb|EDR46288.1| hypothetical protein DORFOR_02896 [Dorea formicigenerans ATCC
          27755]
          Length = 91

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+ +  +S+KDS + +    + + +   +G  I++  F TF   ++ +R G
Sbjct: 1  MNKTELVAAIADKAEISKKDSEKALKAFVDVVTEELKKGHKIQLVGFGTFETSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN  T + +KI+  +   FKA   LK
Sbjct: 61 RNPSTGETMKIEACKAPKFKAGKALK 86


>gi|22124937|ref|NP_668360.1| transcriptional regulator HU subunit beta [Yersinia pestis KIM
          10]
 gi|45440626|ref|NP_992165.1| transcriptional regulator HU subunit beta [Yersinia pestis biovar
          Microtus str. 91001]
 gi|51595312|ref|YP_069503.1| transcriptional regulator HU subunit beta [Yersinia
          pseudotuberculosis IP 32953]
 gi|108808640|ref|YP_652556.1| transcriptional regulator HU subunit beta [Yersinia pestis
          Antiqua]
 gi|108811101|ref|YP_646868.1| transcriptional regulator HU subunit beta [Yersinia pestis
          Nepal516]
 gi|145600049|ref|YP_001164125.1| transcriptional regulator HU subunit beta [Yersinia pestis
          Pestoides F]
 gi|149365000|ref|ZP_01887035.1| DNA-binding protein HU-beta [Yersinia pestis CA88-4125]
 gi|153946890|ref|YP_001402049.1| transcriptional regulator HU subunit beta [Yersinia
          pseudotuberculosis IP 31758]
 gi|162421829|ref|YP_001607417.1| transcriptional regulator HU subunit beta [Yersinia pestis
          Angola]
 gi|165926604|ref|ZP_02222436.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis
          str. F1991016]
 gi|165935858|ref|ZP_02224428.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis
          str. IP275]
 gi|166011019|ref|ZP_02231917.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166212951|ref|ZP_02238986.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|167398669|ref|ZP_02304193.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str.
          UG05-0454]
 gi|167421618|ref|ZP_02313371.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis
          str. MG05-1020]
 gi|167423381|ref|ZP_02315134.1| DNA-binding protein HU-beta [Yersinia pestis biovar Mediaevalis
          str. K1973002]
 gi|170025448|ref|YP_001721953.1| transcriptional regulator HU subunit beta [Yersinia
          pseudotuberculosis YPIII]
 gi|186894329|ref|YP_001871441.1| transcriptional regulator HU subunit beta [Yersinia
          pseudotuberculosis PB1/+]
 gi|218930184|ref|YP_002348059.1| transcriptional regulator HU subunit beta [Yersinia pestis CO92]
 gi|229838758|ref|ZP_04458917.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
          pestis biovar Orientalis str. PEXU2]
 gi|229896088|ref|ZP_04511258.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
          pestis Pestoides A]
 gi|229899326|ref|ZP_04514469.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
          pestis biovar Orientalis str. India 195]
 gi|229901330|ref|ZP_04516452.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
          pestis Nepal516]
 gi|270489516|ref|ZP_06206590.1| DNA-binding protein HU [Yersinia pestis KIM D27]
 gi|21957776|gb|AAM84611.1|AE013706_6 DNA-binding protein HU-beta, NS1 (HU-1) [Yersinia pestis KIM 10]
 gi|45435483|gb|AAS61042.1| DNA-binding protein HU-beta [Yersinia pestis biovar Microtus str.
          91001]
 gi|51588594|emb|CAH20202.1| DNA-binding protein HU-beta, NS1 (HU-1) [Yersinia
          pseudotuberculosis IP 32953]
 gi|108774749|gb|ABG17268.1| bacterial nucleoid protein HU beta subunit [Yersinia pestis
          Nepal516]
 gi|108780553|gb|ABG14611.1| bacterial nucleoid protein HU beta subunit [Yersinia pestis
          Antiqua]
 gi|115348795|emb|CAL21749.1| DNA-binding protein HU-beta [Yersinia pestis CO92]
 gi|145211745|gb|ABP41152.1| bacterial nucleoid protein HU beta subunit [Yersinia pestis
          Pestoides F]
 gi|149291413|gb|EDM41487.1| DNA-binding protein HU-beta [Yersinia pestis CA88-4125]
 gi|152958385|gb|ABS45846.1| DNA-binding protein HU-beta [Yersinia pseudotuberculosis IP
          31758]
 gi|162354644|gb|ABX88592.1| DNA-binding protein HU-beta [Yersinia pestis Angola]
 gi|165916003|gb|EDR34610.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis
          str. IP275]
 gi|165921532|gb|EDR38729.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis
          str. F1991016]
 gi|165990019|gb|EDR42320.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166205738|gb|EDR50218.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|166960537|gb|EDR56558.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis
          str. MG05-1020]
 gi|167051173|gb|EDR62581.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str.
          UG05-0454]
 gi|167057551|gb|EDR67297.1| DNA-binding protein HU-beta [Yersinia pestis biovar Mediaevalis
          str. K1973002]
 gi|169751982|gb|ACA69500.1| histone family protein DNA-binding protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186697355|gb|ACC87984.1| histone family protein DNA-binding protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|229681259|gb|EEO77353.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
          pestis Nepal516]
 gi|229687728|gb|EEO79801.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
          pestis biovar Orientalis str. India 195]
 gi|229695124|gb|EEO85171.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
          pestis biovar Orientalis str. PEXU2]
 gi|229701011|gb|EEO89040.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
          pestis Pestoides A]
 gi|270338020|gb|EFA48797.1| DNA-binding protein HU [Yersinia pestis KIM D27]
 gi|320016340|gb|ADV99911.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
          pestis biovar Medievalis str. Harbin 35]
          Length = 90

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + +S   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDAIITSVTESLKEGDDVALVGFGTFAVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F+A   LK  +
Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKGLKDAV 89


>gi|322419661|ref|YP_004198884.1| histone family protein DNA-binding protein [Geobacter sp. M18]
 gi|320126048|gb|ADW13608.1| histone family protein DNA-binding protein [Geobacter sp. M18]
          Length = 91

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++S++ +  LS K +   V  +F  + ++ + G+ I+I  F +F VK+  +  G
Sbjct: 1  MNKSELIESLAAKKALSFKKAEEVVNAVFASMTEALLSGDRIEIRGFGSFVVKEYDAYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + +  +++  FK    LK+++
Sbjct: 61 RNPKTGESISVKAKKLPFFKVGKELKEKV 89


>gi|182679839|ref|YP_001833985.1| integration host factor, beta subunit [Beijerinckia indica subsp.
          indica ATCC 9039]
 gi|226709769|sp|B2IKV6|IHFB_BEII9 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|182635722|gb|ACB96496.1| integration host factor, beta subunit [Beijerinckia indica subsp.
          indica ATCC 9039]
          Length = 97

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I+ +   L  +D  + V  + +EI  +  RG+ +++  F  F VK++ +R+
Sbjct: 1  MIKSELVQRIADRNPHLYLRDVEKIVNAILDEITRALSRGDRVELRGFGAFSVKRRDARL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V ++ + V  FK    +++R+
Sbjct: 61 GRNPRTGAHVPVEEKSVPFFKTGKEMRERL 90


>gi|85708103|ref|ZP_01039169.1| hypothetical protein NAP1_02670 [Erythrobacter sp. NAP1]
 gi|85689637|gb|EAQ29640.1| hypothetical protein NAP1_02670 [Erythrobacter sp. NAP1]
          Length = 90

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ ++++  GL++ D+   V  +F+ I  +   G+ +++  F TF V ++ + +G
Sbjct: 1  MNKNDLISAVAENSGLTKSDAANAVEGVFDAIQKALADGDEVRLVGFGTFAVAKRKASMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I       FKA   LK  +
Sbjct: 61 RNPRTGEPMPIKASNQPKFKAGKGLKDAV 89


>gi|163785054|ref|ZP_02179777.1| Histone-like DNA-binding protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879681|gb|EDP73462.1| Histone-like DNA-binding protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 97

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 7/91 (7%)

Query: 5  ITRSDLVKSI--SKEFGLSRKDSTRFVTTLFNEICDSAVRGE---AIKISSFATFHVKQK 59
          +T+ D+V+ I  +K+  L++KD    V  LF+ I +    G+    I+IS F TF VK++
Sbjct: 1  MTKIDIVEWILDNKDINLTKKDIKIIVDELFSLIENELKNGQDGKKIQISGFGTFFVKKR 60

Query: 60 GSRVGRNLQTNQEVKIDPRRV-VVFKASSIL 89
           ++VGRN +TN+E KI P R+ V FK    L
Sbjct: 61 KAKVGRNPRTNEE-KIVPERLGVSFKPGKKL 90


>gi|157373740|ref|YP_001472340.1| histone family protein DNA-binding protein [Shewanella sediminis
          HAW-EB3]
 gi|157316114|gb|ABV35212.1| histone family protein DNA-binding protein [Shewanella sediminis
          HAW-EB3]
          Length = 90

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  I++   L++ ++ R + +    + ++   G+ I I  F +F    + +R G
Sbjct: 1  MNKTELVAKIAENAELTKAEAARALKSFEETVTEAMKNGDKISIVGFGSFETSNRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I    V  FKA   LK
Sbjct: 61 RNPQTGKEIQIPAATVPKFKAGKTLK 86


>gi|26989027|ref|NP_744452.1| histone family protein DNA-binding protein [Pseudomonas putida
          KT2440]
 gi|148548674|ref|YP_001268776.1| histone family protein DNA-binding protein [Pseudomonas putida
          F1]
 gi|14028717|gb|AAK52475.1|AF345628_1 histone-like protein HU form B [Pseudomonas putida]
 gi|24983851|gb|AAN67916.1|AE016424_2 DNA-binding protein HU-beta [Pseudomonas putida KT2440]
 gi|148512732|gb|ABQ79592.1| bacterial nucleoid protein HU beta subunit [Pseudomonas putida
          F1]
 gi|313499611|gb|ADR60977.1| HupB [Pseudomonas putida BIRD-1]
          Length = 90

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  +   +  +  +G+ + +  F TF VK++  R G
Sbjct: 1  MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTFSVKERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + +KI+  +V  FKA   LK  +
Sbjct: 61 RNPQTGKAIKIEAAKVPGFKAGKGLKDAV 89


>gi|218667767|ref|YP_002425678.1| DNA-binding protein HU family protein [Acidithiobacillus
          ferrooxidans ATCC 23270]
 gi|218519980|gb|ACK80566.1| DNA-binding protein HU family protein [Acidithiobacillus
          ferrooxidans ATCC 23270]
          Length = 91

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 1  MSKTITRSDLVKSISKEFGLSR--KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          MS+   + DL KS+  + GL+   + +   V  L   I +    G  ++I  F TF    
Sbjct: 1  MSEISGKKDLAKSLV-DAGLAPTVRKAEDIVQHLVESIVELVSEGHKVRIHQFGTFQQIH 59

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKAS 86
          + +R+GRN QT  E++I  R+V+ FKAS
Sbjct: 60 RAARMGRNPQTGGELEIPERKVLTFKAS 87


>gi|254480378|ref|ZP_05093625.1| DNA-binding protein HU [marine gamma proteobacterium HTCC2148]
 gi|214038961|gb|EEB79621.1| DNA-binding protein HU [marine gamma proteobacterium HTCC2148]
          Length = 91

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 39/73 (53%)

Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80
          S+ D+ R +  + + + D+  +G+ + +  F TF VK + +R GRN QT   ++I    V
Sbjct: 17 SKADAGRALDAVVDSVTDALKKGDQVSLVGFGTFSVKHRSARTGRNPQTGAAIEIKASEV 76

Query: 81 VVFKASSILKKRI 93
            FKA   LK  +
Sbjct: 77 PSFKAGKALKDAV 89


>gi|90410785|ref|ZP_01218800.1| putative bacterial nucleoid DNA-binding protein [Photobacterium
          profundum 3TCK]
 gi|90328416|gb|EAS44714.1| putative bacterial nucleoid DNA-binding protein [Photobacterium
          profundum 3TCK]
          Length = 91

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV  I++   +S+  + R +    + +  +   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKTQLVDKIAESADISKASAGRALDAFIDAVSGTLKDGDQVALVGFGTFSVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   +V  FK    LK  +
Sbjct: 61 RNPQTGEEIQIAAAKVPGFKPGKALKDSV 89


>gi|88798959|ref|ZP_01114540.1| integration host factor beta subunit [Reinekea sp. MED297]
 gi|88778186|gb|EAR09380.1| integration host factor beta subunit [Reinekea sp. MED297]
          Length = 101

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I    G LS +D    + T+ + +  +   GE I+I  F +F +  +  RV
Sbjct: 6  VTKSELIERIVDRQGQLSVRDVELAIKTMLDHMAQALAEGERIEIRGFGSFSLHYRSPRV 65

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T + V+++ + V  FK    L++ + + +
Sbjct: 66 GRNPKTGESVELEGKYVPHFKPGKELRESVNESL 99


>gi|92115364|ref|YP_575292.1| histone-like DNA-binding protein [Chromohalobacter salexigens DSM
          3043]
 gi|91798454|gb|ABE60593.1| histone-like DNA-binding protein [Chromohalobacter salexigens DSM
          3043]
          Length = 90

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 46/84 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L  +I++   LS+  +++ +  + +EI  +  +G+ + +  F  F V+++ +R G+N
Sbjct: 3  KPELAAAIAERADLSKDKASQVLNVILDEITGTVSKGQDVSLIGFGAFTVRERAARTGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT + + I   + V FK    LK
Sbjct: 63 PQTGKPLTIPASKTVAFKPGKALK 86


>gi|85716441|ref|ZP_01047413.1| Histone-like DNA-binding protein [Nitrobacter sp. Nb-311A]
 gi|85696798|gb|EAQ34684.1| Histone-like DNA-binding protein [Nitrobacter sp. Nb-311A]
          Length = 112

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T   L  +++++  LS+K +   +T +   I     +G+ I+I       V+++ +R 
Sbjct: 23  TVTLKHLAAALAEDHELSKKAAEAILTDMVTRITKHLKKGDRIRIVGLGILQVRKRAARK 82

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN  T +E++I   + V F+A+  LK+ I
Sbjct: 83  GRNPATGEEIQIKASKKVAFRAAKELKEAI 112


>gi|163867319|ref|YP_001608513.1| integration host factor subunit beta [Bartonella tribocorum CIP
          105476]
 gi|254803527|sp|A9IL25|IHFB_BART1 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|161016960|emb|CAK00518.1| integration host factor beta chain [Bartonella tribocorum CIP
          105476]
          Length = 92

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  +F EI  +   G+ +++  F  F VK + +R 
Sbjct: 1  MVKSELVQIIARHNPHLFQRDVENIVNAIFEEISTALANGDRVELRGFGAFSVKSRSARN 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +D + +  FK    L+ R+
Sbjct: 61 GRNPRTGEAVAVDEKWIPFFKTGKDLRDRL 90


>gi|92117746|ref|YP_577475.1| histone-like DNA-binding protein [Nitrobacter hamburgensis X14]
 gi|91800640|gb|ABE63015.1| histone-like DNA-binding protein [Nitrobacter hamburgensis X14]
          Length = 99

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T   L  +++++  LS+K +   ++ +   I     +GE I+I       V+++ +R 
Sbjct: 10 TVTLKHLAAALAEDHELSKKAAEAILSDMVTRITKHLKKGERIRIVGLGILQVRKRAARK 69

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN  T +E++I   + V F+A+  LK+ I
Sbjct: 70 GRNPATGEEIQIKASKKVAFRAAKELKEAI 99


>gi|325972610|ref|YP_004248801.1| histone family protein DNA-binding protein [Spirochaeta sp. Buddy]
 gi|324027848|gb|ADY14607.1| histone family protein DNA-binding protein [Spirochaeta sp. Buddy]
          Length = 108

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 1/103 (0%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK-QKGSRV 63
           +T++ +++S+ ++ GL+R D  + +   F E+ D     + I++  F TF V+ +KG   
Sbjct: 6   LTKAAIIESLHEKHGLNRADIHQIIDEFFEEVKDGLKNDQVIELRGFGTFEVRTRKGREK 65

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
            RN +T   V ++   V +F+    LK  + +    +  N++D
Sbjct: 66  ARNPKTGAIVAVETHGVAIFRPGKELKDFVWELRDNKPVNEND 108


>gi|268590154|ref|ZP_06124375.1| integration host factor, beta subunit [Providencia rettgeri DSM
          1131]
 gi|291314429|gb|EFE54882.1| integration host factor, beta subunit [Providencia rettgeri DSM
          1131]
          Length = 95

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + S++  LS K     V  +   + D+   GE I++  F +F +  +  RV
Sbjct: 1  MTKSELIERLASQQSHLSAKTVEEAVKEILEHMADTLANGERIEVRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  +V+++ + V  FK    L+ R+
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRV 90


>gi|114327968|ref|YP_745125.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1]
 gi|114316142|gb|ABI62202.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1]
          Length = 97

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++ E  L R  + + V  +   I  +  R E +++  F +F V  + + VG
Sbjct: 1  MNKMELITAVADELELPRSRAAQAVDAVLGSIESALKRHEEVRLVGFGSFSVASRKASVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E+ I P   V FKA   LK
Sbjct: 61 RNPRTGEEIAIPPALSVRFKAGKTLK 86


>gi|304311293|ref|YP_003810891.1| Histone-like bacterial dna-binding protein [gamma proteobacterium
          HdN1]
 gi|301797026|emb|CBL45239.1| Histone-like bacterial dna-binding protein [gamma proteobacterium
          HdN1]
          Length = 91

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  ++R +  +   + D+  + E + +  F TF VK + +R G
Sbjct: 1  MNKSELIDAIAASADIPKAQASRALDAVITSVTDALKKDEQVALVGFGTFSVKDRAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I   ++  FK    LK  +
Sbjct: 61 RNPQTGETIDIPAAKIPSFKPGKALKDAV 89


>gi|153806286|ref|ZP_01958954.1| hypothetical protein BACCAC_00542 [Bacteroides caccae ATCC 43185]
 gi|149130963|gb|EDM22169.1| hypothetical protein BACCAC_00542 [Bacteroides caccae ATCC 43185]
          Length = 92

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 45/89 (50%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+   +    +++  G + KD+   + +L +++      G  I +  F +F VK+K  R+
Sbjct: 2  TMNNKEFTSELAERLGYTIKDTAELIGSLLSDMVQELEEGNVIAVQGFGSFEVKKKAERI 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
            N  + Q + + P+ V+ +K S+ LK +
Sbjct: 62 SINPASKQRMLVPPKLVLSYKPSNTLKDK 90


>gi|222055458|ref|YP_002537820.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32]
 gi|221564747|gb|ACM20719.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32]
          Length = 93

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ K +     LSRK+S   ++ +F+ + D+   GE ++I  F +F ++ + +R 
Sbjct: 1  MTKSELIDKLVEANSVLSRKESEAIISIVFDSMSDALKSGEKVEIRGFGSFTIRARDARE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN ++ + VKI  ++   FK    L++R+
Sbjct: 61 ARNPKSGELVKIPSKKTPFFKTGKELRERV 90


>gi|313238132|emb|CBY13230.1| unnamed protein product [Oikopleura dioica]
          Length = 91

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 8/91 (8%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTR-----FVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          + +++L+ +I    G   KD+T+      +  + + I     + + ++I  F TF VK++
Sbjct: 1  MNKAELIDAIQAALG---KDATKRAADEALEAVLSSIAKGVKKDKKVQIIGFGTFEVKKR 57

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
           +R GRN +T + +KI   + V FKASS+LK
Sbjct: 58 AARTGRNPKTGEAMKIAASKSVGFKASSVLK 88


>gi|242241106|ref|YP_002989287.1| transcriptional regulator HU subunit alpha [Dickeya dadantii
          Ech703]
 gi|242133163|gb|ACS87465.1| histone family protein DNA-binding protein [Dickeya dadantii
          Ech703]
          Length = 90

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   +      I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKTQAKAALEATLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F A   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVAGKALKDAV 89


>gi|90021258|ref|YP_527085.1| nucleoid protein HU subunit beta [Saccharophagus degradans 2-40]
 gi|89950858|gb|ABD80873.1| bacterial nucleoid protein HU beta subunit [Saccharophagus
          degradans 2-40]
          Length = 90

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I+    +S+  + R +  +   I ++   G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSELIEAIAASADISKAAAGRALDAVTESIGEALKNGDQVALVGFGTFLVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I   ++  FK    LK  +
Sbjct: 61 RNPQTGAPIEIAAAKIPSFKPGKALKDAV 89


>gi|304415426|ref|ZP_07396077.1| HU DNA-binding transcriptional regulator alpha subunit
          [Candidatus Regiella insecticola LSR1]
 gi|304282725|gb|EFL91237.1| HU DNA-binding transcriptional regulator alpha subunit
          [Candidatus Regiella insecticola LSR1]
          Length = 141

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  ++++ G S+ D+   V  + + I ++   GE ++I  F TF   ++ +R G
Sbjct: 1  MNKTQLIDKVAEKIGSSKTDARAAVDAILDSITEALEEGEQMQIVGFGTFKTSKRQARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT  E++I    V  F     LK
Sbjct: 61 RNPQTGAEIQIPATTVATFTVGKELK 86


>gi|168187043|ref|ZP_02621678.1| DNA-binding protein HU [Clostridium botulinum C str. Eklund]
 gi|169295104|gb|EDS77237.1| DNA-binding protein HU [Clostridium botulinum C str. Eklund]
          Length = 92

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 49/87 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ S++++  L++KD    +      + ++ + GE +++  F TF  +++  R G
Sbjct: 1  MNKSELITSMAEKSQLTKKDVEVALKAFIESVEEALMDGEKVQLVGFGTFETRERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T +E+ I    V VFKA    K+
Sbjct: 61 RNPRTKEEITIPAATVPVFKAGKEFKE 87


>gi|145220403|ref|YP_001131112.1| histone family protein DNA-binding protein [Prosthecochloris
          vibrioformis DSM 265]
 gi|145206567|gb|ABP37610.1| histone family protein DNA-binding protein [Chlorobium
          phaeovibrioides DSM 265]
          Length = 91

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++++LV+ I+ +  L++ D+ + V    N +  S   G+ + +  F TF    +  R G
Sbjct: 1  MSKAELVEKIAAQANLTKVDAEKSVNAFINVVTSSLKAGDDVTLVGFGTFTTGDRAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I  + VV FK    LK  +
Sbjct: 61 RNPQTGKTITIPAKTVVKFKPGKALKDEV 89


>gi|34539986|ref|NP_904465.1| DNA-binding protein HU [Porphyromonas gingivalis W83]
 gi|188994099|ref|YP_001928351.1| DNA-binding protein HU [Porphyromonas gingivalis ATCC 33277]
 gi|34396297|gb|AAQ65364.1| DNA-binding protein HU [Porphyromonas gingivalis W83]
 gi|188593779|dbj|BAG32754.1| DNA-binding protein HU [Porphyromonas gingivalis ATCC 33277]
          Length = 88

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D + +++++  L++ D+ R V      + +    GE I +  F TF V ++ +R G
Sbjct: 1  MNKTDFIAAVAEKANLTKADAQRAVNAFAEVVTEQMNAGEKIALIGFGTFSVSERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N +T + + I  R+VV FK  S L+
Sbjct: 61 INPKTKKSISIPARKVVRFKPGSTLE 86


>gi|225851686|ref|YP_002731919.1| integration host factor subunit beta [Brucella melitensis ATCC
          23457]
 gi|256045945|ref|ZP_05448817.1| integration host factor subunit beta [Brucella melitensis bv. 1
          str. Rev.1]
 gi|256264801|ref|ZP_05467333.1| integration host factor subunit beta [Brucella melitensis bv. 2
          str. 63/9]
 gi|260563226|ref|ZP_05833712.1| integration host factor subunit beta [Brucella melitensis bv. 1
          str. 16M]
 gi|265992355|ref|ZP_06104912.1| integration host factor subunit beta [Brucella melitensis bv. 1
          str. Rev.1]
 gi|21362604|sp|Q8YET3|IHFB_BRUME RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|254803528|sp|C0RGK7|IHFB_BRUMB RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|225640051|gb|ACN99964.1| integration host factor, beta subunit [Brucella melitensis ATCC
          23457]
 gi|260153242|gb|EEW88334.1| integration host factor subunit beta [Brucella melitensis bv. 1
          str. 16M]
 gi|263003421|gb|EEZ15714.1| integration host factor subunit beta [Brucella melitensis bv. 1
          str. Rev.1]
 gi|263095212|gb|EEZ18881.1| integration host factor subunit beta [Brucella melitensis bv. 2
          str. 63/9]
          Length = 94

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I S+   L ++D    V  +F+EI ++   G  +++  F  F VK + +R 
Sbjct: 1  MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FK    L+ R+
Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRL 90


>gi|260913658|ref|ZP_05920134.1| integration host factor subunit beta [Pasteurella dagmatis ATCC
          43325]
 gi|260632197|gb|EEX50372.1| integration host factor subunit beta [Pasteurella dagmatis ATCC
          43325]
          Length = 94

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++  + K   +S KD    V  + +++  +   G+ I++  F +F +  +  R+
Sbjct: 1  MTKSELIERLVQKHPSISAKDVENSVKEILDQMSFALENGKRIEVRGFGSFSLHYRQPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++VK+D + V  FKA   L++R+
Sbjct: 61 GRNPKTGEQVKLDAKSVPHFKAGKELRERV 90


>gi|197116588|ref|YP_002137015.1| histone-like protein [Geobacter bemidjiensis Bem]
 gi|253698824|ref|YP_003020013.1| histone family protein DNA-binding protein [Geobacter sp. M21]
 gi|197085948|gb|ACH37219.1| histone-like protein [Geobacter bemidjiensis Bem]
 gi|251773674|gb|ACT16255.1| histone family protein DNA-binding protein [Geobacter sp. M21]
          Length = 94

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV++++K   + +  + + V    + +  +  +G+ + +  F +F V  + +R G
Sbjct: 1  MTKAELVEAVAKSANIPKGAAEKAVGAFISSVSGALKKGDRVTLVGFGSFEVASRQARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI   +V  F+    LK  I
Sbjct: 61 RNPQTGKEIKIAEAKVPKFRPGKALKDAI 89


>gi|239994306|ref|ZP_04714830.1| integration host factor subunit beta [Alteromonas macleodii ATCC
          27126]
          Length = 95

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ +   +  K+    +  L  ++  +  +GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLADQARHIPAKELELAIKELLEQMAQTLQKGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + VK+D + V  FK    L++R+
Sbjct: 61 GRNPKTGETVKLDGKYVPHFKPGKELRERV 90


>gi|15641921|ref|NP_231553.1| DNA-binding protein HU-beta [Vibrio cholerae O1 biovar El Tor
          str. N16961]
 gi|121591617|ref|ZP_01678865.1| DNA-binding protein HU-beta [Vibrio cholerae 2740-80]
 gi|121727834|ref|ZP_01680901.1| DNA-binding protein HU-beta [Vibrio cholerae V52]
 gi|147673385|ref|YP_001217452.1| DNA-binding protein HU-beta [Vibrio cholerae O395]
 gi|153820106|ref|ZP_01972773.1| DNA-binding protein HU-beta [Vibrio cholerae NCTC 8457]
 gi|153823843|ref|ZP_01976510.1| DNA-binding protein HU-beta [Vibrio cholerae B33]
 gi|153827659|ref|ZP_01980326.1| DNA-binding protein HU-beta [Vibrio cholerae MZO-2]
 gi|183179757|ref|ZP_02957968.1| DNA-binding protein HU-beta [Vibrio cholerae MZO-3]
 gi|227082049|ref|YP_002810600.1| DNA-binding protein HU-beta [Vibrio cholerae M66-2]
 gi|229507985|ref|ZP_04397490.1| DNA-binding protein HU-beta [Vibrio cholerae BX 330286]
 gi|229511778|ref|ZP_04401257.1| DNA-binding protein HU-beta [Vibrio cholerae B33]
 gi|229515305|ref|ZP_04404765.1| DNA-binding protein HU-beta [Vibrio cholerae TMA 21]
 gi|229518915|ref|ZP_04408358.1| DNA-binding protein HU-beta [Vibrio cholerae RC9]
 gi|229521841|ref|ZP_04411258.1| DNA-binding protein HU-beta [Vibrio cholerae TM 11079-80]
 gi|229523939|ref|ZP_04413344.1| DNA-binding protein HU-beta [Vibrio cholerae bv. albensis VL426]
 gi|229529055|ref|ZP_04418445.1| DNA-binding protein HU-beta [Vibrio cholerae 12129(1)]
 gi|229607531|ref|YP_002878179.1| DNA-binding protein HU-beta [Vibrio cholerae MJ-1236]
 gi|254286720|ref|ZP_04961674.1| DNA-binding protein HU-beta [Vibrio cholerae AM-19226]
 gi|254849007|ref|ZP_05238357.1| DNA-binding protein HU-beta [Vibrio cholerae MO10]
 gi|255745322|ref|ZP_05419271.1| DNA-binding protein HU-beta [Vibrio cholera CIRS 101]
 gi|258621305|ref|ZP_05716339.1| DNA-binding protein HU-beta [Vibrio mimicus VM573]
 gi|258625371|ref|ZP_05720268.1| DNA-binding protein HU-beta [Vibrio mimicus VM603]
 gi|262156046|ref|ZP_06029166.1| DNA-binding protein HU-beta [Vibrio cholerae INDRE 91/1]
 gi|262166049|ref|ZP_06033786.1| DNA-binding protein HU-beta [Vibrio mimicus VM223]
 gi|262167881|ref|ZP_06035581.1| DNA-binding protein HU-beta [Vibrio cholerae RC27]
 gi|262171086|ref|ZP_06038764.1| DNA-binding protein HU-beta [Vibrio mimicus MB-451]
 gi|262404272|ref|ZP_06080827.1| DNA-binding protein HU-beta [Vibrio sp. RC586]
 gi|297579437|ref|ZP_06941365.1| DNA-binding protein HU-beta [Vibrio cholerae RC385]
 gi|298498043|ref|ZP_07007850.1| DNA-binding protein HU-beta [Vibrio cholerae MAK 757]
 gi|14194651|sp|Q9KQS9|DBHB_VIBCH RecName: Full=DNA-binding protein HU-beta
 gi|9656454|gb|AAF95067.1| DNA-binding protein HU-beta [Vibrio cholerae O1 biovar El Tor
          str. N16961]
 gi|121546530|gb|EAX56738.1| DNA-binding protein HU-beta [Vibrio cholerae 2740-80]
 gi|121629870|gb|EAX62284.1| DNA-binding protein HU-beta [Vibrio cholerae V52]
 gi|126509348|gb|EAZ71942.1| DNA-binding protein HU-beta [Vibrio cholerae NCTC 8457]
 gi|126518640|gb|EAZ75863.1| DNA-binding protein HU-beta [Vibrio cholerae B33]
 gi|146315268|gb|ABQ19807.1| DNA-binding protein HU-beta [Vibrio cholerae O395]
 gi|149737865|gb|EDM52770.1| DNA-binding protein HU-beta [Vibrio cholerae MZO-2]
 gi|150423147|gb|EDN15094.1| DNA-binding protein HU-beta [Vibrio cholerae AM-19226]
 gi|183013168|gb|EDT88468.1| DNA-binding protein HU-beta [Vibrio cholerae MZO-3]
 gi|227009937|gb|ACP06149.1| DNA-binding protein HU-beta [Vibrio cholerae M66-2]
 gi|227013817|gb|ACP10027.1| DNA-binding protein HU-beta [Vibrio cholerae O395]
 gi|229332829|gb|EEN98315.1| DNA-binding protein HU-beta [Vibrio cholerae 12129(1)]
 gi|229337520|gb|EEO02537.1| DNA-binding protein HU-beta [Vibrio cholerae bv. albensis VL426]
 gi|229340766|gb|EEO05771.1| DNA-binding protein HU-beta [Vibrio cholerae TM 11079-80]
 gi|229343604|gb|EEO08579.1| DNA-binding protein HU-beta [Vibrio cholerae RC9]
 gi|229348010|gb|EEO12969.1| DNA-binding protein HU-beta [Vibrio cholerae TMA 21]
 gi|229351743|gb|EEO16684.1| DNA-binding protein HU-beta [Vibrio cholerae B33]
 gi|229355490|gb|EEO20411.1| DNA-binding protein HU-beta [Vibrio cholerae BX 330286]
 gi|229370186|gb|ACQ60609.1| DNA-binding protein HU-beta [Vibrio cholerae MJ-1236]
 gi|254844712|gb|EET23126.1| DNA-binding protein HU-beta [Vibrio cholerae MO10]
 gi|255737152|gb|EET92548.1| DNA-binding protein HU-beta [Vibrio cholera CIRS 101]
 gi|258582362|gb|EEW07214.1| DNA-binding protein HU-beta [Vibrio mimicus VM603]
 gi|258586693|gb|EEW11408.1| DNA-binding protein HU-beta [Vibrio mimicus VM573]
 gi|261892162|gb|EEY38148.1| DNA-binding protein HU-beta [Vibrio mimicus MB-451]
 gi|262023608|gb|EEY42309.1| DNA-binding protein HU-beta [Vibrio cholerae RC27]
 gi|262025765|gb|EEY44433.1| DNA-binding protein HU-beta [Vibrio mimicus VM223]
 gi|262030224|gb|EEY48868.1| DNA-binding protein HU-beta [Vibrio cholerae INDRE 91/1]
 gi|262349304|gb|EEY98442.1| DNA-binding protein HU-beta [Vibrio sp. RC586]
 gi|297537031|gb|EFH75864.1| DNA-binding protein HU-beta [Vibrio cholerae RC385]
 gi|297542376|gb|EFH78426.1| DNA-binding protein HU-beta [Vibrio cholerae MAK 757]
 gi|327484463|gb|AEA78870.1| DNA-binding protein HU-beta [Vibrio cholerae LMA3894-4]
          Length = 90

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I+    +S+  + R +      +  +   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVEQIAANADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E+KI   +V  FKA   LK
Sbjct: 61 RNPKTGEEIKIAEAKVPSFKAGKALK 86


>gi|284924092|emb|CBG37191.1| DNA-binding protein HU-alpha [Escherichia coli 042]
          Length = 90

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIAEKAELSKTQAKAALESTLTAITESLKEGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+KI    V  F +   LK
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALK 86


>gi|259906948|ref|YP_002647304.1| DNA-binding protein HU-alpha [Erwinia pyrifoliae Ep1/96]
 gi|224962570|emb|CAX54025.1| DNA-binding protein HU-alpha [Erwinia pyrifoliae Ep1/96]
 gi|283476742|emb|CAY72577.1| DNA-binding protein HU-alpha [Erwinia pyrifoliae DSM 12163]
          Length = 90

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V Q+  R+G
Sbjct: 1  MNKTQLIDIIADKADLSKTQAKAALESTLTAITESLKEGDAVQLVGFGTFKVNQRAGRIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  E++I    V  F +   LK+ +
Sbjct: 61 RNPKTGNEIQIAASTVPAFTSGKALKEAV 89


>gi|119503318|ref|ZP_01625402.1| DNA-binding protein HU-beta (NS1) (HU-1) [marine gamma
          proteobacterium HTCC2080]
 gi|119460964|gb|EAW42055.1| DNA-binding protein HU-beta (NS1) (HU-1) [marine gamma
          proteobacterium HTCC2080]
          Length = 91

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++E  LS+  + R +    N I  +  + + + +  F TF VK + +R G
Sbjct: 1  MNKNELVDAIAEEADLSKASAGRALDAAINAITGALTKQDTVSLVGFGTFSVKHRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN ++ + ++I       FKA   LK  +
Sbjct: 61 RNPRSGETIQIKASNAPGFKAGKALKDAV 89


>gi|87199239|ref|YP_496496.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans
          DSM 12444]
 gi|87134920|gb|ABD25662.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans
          DSM 12444]
          Length = 91

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  SDL   I+   GLS+ D+ + V ++F  I D+A +GE + ++ F  F VK   +R G
Sbjct: 1  MNNSDLADIIAANHGLSKADARKAVDSVFAAIADAAAKGEEVSLNGFGKFKVKNTPAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T   ++I     + F A+  +K ++
Sbjct: 61 RNPSTGATIQIAASNKLTFAAAKAVKDKL 89


>gi|91787441|ref|YP_548393.1| histone-like protein DNA-binding protein [Polaromonas sp. JS666]
 gi|91696666|gb|ABE43495.1| HU family DNA-binding protein [Polaromonas sp. JS666]
          Length = 103

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R++L++SI+ E  LS+  + R +  L + I  +  +G+A+++  F TF   ++ +R G
Sbjct: 1  MNRAELIESIAAETDLSKAATGRVLDVLIDTIQKTVKKGDAVQLVGFGTFKSTKRSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          +N +T + VKI    V  F A +  K
Sbjct: 61 KNPRTGEAVKIPATTVPKFVAGAKFK 86


>gi|270263573|ref|ZP_06191842.1| histone family protein DNA-binding protein [Serratia odorifera
           4Rx13]
 gi|270042457|gb|EFA15552.1| histone family protein DNA-binding protein [Serratia odorifera
           4Rx13]
          Length = 101

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +S L+  I+    +S+  + R +  +   + +S   G+ + +  F +F V+++ +R G
Sbjct: 12  VNKSQLIDKIAAGADISKAAAGRALDAVIASVTESLKEGDDVALVGFGSFTVRERSARTG 71

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN QT +E+ I   +V  F+A   LK  +
Sbjct: 72  RNPQTGKEINIAAAKVPAFRAGKALKDAV 100


>gi|209523054|ref|ZP_03271611.1| histone family protein DNA-binding protein [Arthrospira maxima
          CS-328]
 gi|209496641|gb|EDZ96939.1| histone family protein DNA-binding protein [Arthrospira maxima
          CS-328]
          Length = 98

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 46/92 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  LV+  S + G+++K +   ++ +   I D+   GE + +  F +F  + + +R G
Sbjct: 1  MNKEQLVQETSIKAGVTKKQADAIISAICECIMDAVAEGEKVTLVGFGSFEARHRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN  T Q + I    V  F A    K+R+ ++
Sbjct: 61 RNPSTGQPMTIPATTVPAFSAGKAFKERVANE 92


>gi|297587538|ref|ZP_06946182.1| DNA-binding protein HU [Finegoldia magna ATCC 53516]
 gi|297574227|gb|EFH92947.1| DNA-binding protein HU [Finegoldia magna ATCC 53516]
          Length = 96

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ SI+K+  LS+ +S R +      + ++  +GE +++  F TF  +++ +R G
Sbjct: 1  MNKSELLTSIAKKSELSKVESERALNAFIKTVEETLAKGEKVQLVGFGTFESRERKAREG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRI 93
          RN +  +E ++I      VFKA   LK+ +
Sbjct: 61 RNPRNPEEKIQIPASNAPVFKAGKSLKEAV 90


>gi|153952810|ref|YP_001393575.1| Hup [Clostridium kluyveri DSM 555]
 gi|219853475|ref|YP_002470597.1| hypothetical protein CKR_0132 [Clostridium kluyveri NBRC 12016]
 gi|146345691|gb|EDK32227.1| Hup [Clostridium kluyveri DSM 555]
 gi|219567199|dbj|BAH05183.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 91

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  I+++  L++KD+   +      + ++  +GE +++  F TF  +++ +RVG
Sbjct: 1  MNKSELIVGIAEKSKLTKKDAEAALKGFIESVEETLEKGEKVQLVGFGTFETRKRAARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I    V VFKA    + ++
Sbjct: 61 RNPRTKEVINIPESTVPVFKAGKEFRDKV 89


>gi|78222818|ref|YP_384565.1| histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
 gi|78194073|gb|ABB31840.1| Histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
          Length = 96

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV +++K   L++  + + V  +   +  +  +G+ + +  F +F V  + +R G
Sbjct: 1  MTKAELVDAVAKSAELTKAAADKAVNGVIEAVTAALKKGDKVTLVGFGSFEVATRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+KI   +V  F+    LK
Sbjct: 61 RNPQTGKEIKIAAAKVPKFRPGKALK 86


>gi|149928275|ref|ZP_01916518.1| Integration host factor, beta subunit [Limnobacter sp. MED105]
 gi|149823004|gb|EDM82246.1| Integration host factor, beta subunit [Limnobacter sp. MED105]
          Length = 98

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  + K F  L  +D+   V ++ + +  +   G+ I+I  F +F + ++  RV
Sbjct: 1  MTKSELINQLVKRFPKLPVRDTDFAVKSILDSMTQALAEGQRIEIRGFGSFSLTRRPQRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V +  +RV  FK    L++R+
Sbjct: 61 GRNPKSGEQVVVPEKRVPHFKPGKELRERV 90


>gi|328948102|ref|YP_004365439.1| histone family protein DNA-binding protein [Treponema
          succinifaciens DSM 2489]
 gi|328448426|gb|AEB14142.1| histone family protein DNA-binding protein [Treponema
          succinifaciens DSM 2489]
          Length = 92

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ ++K  GL +KD+   + +    +     +G  +++  F TF V ++ +R G
Sbjct: 1  MNKAELIEKMAKSTGLPKKDAESALKSFLEIVSKELEKGHDVQLIGFGTFTVGKRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T + +KI   +   FK    LK R+
Sbjct: 61 RNPATGETIKIAASKTPKFKPGKALKDRL 89


>gi|296284719|ref|ZP_06862717.1| histone-like protein [Citromicrobium bathyomarinum JL354]
          Length = 90

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++  GLS+ D++  V  +F+ I  +   G+ +++  F TF V ++ +  G
Sbjct: 1  MNKNELIGTVAESCGLSKSDASNAVEGVFDAIQKALANGDEVRLVGFGTFSVAKRKASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + ++I       FKA   LK  +
Sbjct: 61 RNPRTGEPMEIKASNQPKFKAGKGLKDAV 89


>gi|322417739|ref|YP_004196962.1| histone family protein DNA-binding protein [Geobacter sp. M18]
 gi|320124126|gb|ADW11686.1| histone family protein DNA-binding protein [Geobacter sp. M18]
          Length = 94

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV++++K   + +  + + V    + +  +  +G+ + +  F +F V  + +R G
Sbjct: 1  MTKAELVEAVAKSANIPKAAAEKAVGAFISTVSGALKKGDRVTLVGFGSFEVASRQARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI   +V  F+    LK  I
Sbjct: 61 RNPQTGKEIKIAEAKVPKFRPGKALKDAI 89


>gi|222147331|ref|YP_002548288.1| integration host factor subunit beta [Agrobacterium vitis S4]
 gi|254803526|sp|B9JZH2|IHFB_AGRVS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|221734321|gb|ACM35284.1| integration host factor beta subunit [Agrobacterium vitis S4]
          Length = 103

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ ++ +   L  +D    V  + +EI D+   G  +++  F  F VK + SR 
Sbjct: 1  MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALASGNRVELRGFGAFSVKNRPSRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T   V ++ + V  FK    L++R+   M
Sbjct: 61 GRNPRTGDTVFVEEKWVPFFKTGKELRERLNPGM 94


>gi|52424240|ref|YP_087377.1| HimA protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306292|gb|AAU36792.1| HimA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 91

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+    L++K +   +    + I  S   G+++++  F TF V ++ +R G
Sbjct: 1  MNKTDLIDAIASAAELNKKQAKAALEATLDAITASLKAGDSVQLIGFGTFKVSERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I   +V  F +   LK  +
Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAV 89


>gi|123443339|ref|YP_001007313.1| transcriptional regulator HU subunit beta [Yersinia
          enterocolitica subsp. enterocolitica 8081]
 gi|238759259|ref|ZP_04620426.1| DNA-binding protein HU [Yersinia aldovae ATCC 35236]
 gi|238764857|ref|ZP_04625798.1| DNA-binding protein HU [Yersinia kristensenii ATCC 33638]
 gi|238783606|ref|ZP_04627627.1| DNA-binding protein HU [Yersinia bercovieri ATCC 43970]
 gi|238788011|ref|ZP_04631807.1| DNA-binding protein HU [Yersinia frederiksenii ATCC 33641]
 gi|238791434|ref|ZP_04635072.1| DNA-binding protein HU [Yersinia intermedia ATCC 29909]
 gi|238795539|ref|ZP_04639054.1| DNA-binding protein HU [Yersinia mollaretii ATCC 43969]
 gi|332160752|ref|YP_004297329.1| transcriptional regulator HU subunit beta [Yersinia
          enterocolitica subsp. palearctica 105.5R(r)]
 gi|122090300|emb|CAL13166.1| DNA-binding protein HU-beta [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|238696964|gb|EEP89740.1| DNA-binding protein HU [Yersinia kristensenii ATCC 33638]
 gi|238702546|gb|EEP95096.1| DNA-binding protein HU [Yersinia aldovae ATCC 35236]
 gi|238715484|gb|EEQ07475.1| DNA-binding protein HU [Yersinia bercovieri ATCC 43970]
 gi|238720658|gb|EEQ12459.1| DNA-binding protein HU [Yersinia mollaretii ATCC 43969]
 gi|238723959|gb|EEQ15603.1| DNA-binding protein HU [Yersinia frederiksenii ATCC 33641]
 gi|238729050|gb|EEQ20566.1| DNA-binding protein HU [Yersinia intermedia ATCC 29909]
 gi|318604632|emb|CBY26130.1| DNA-binding protein HU-beta [Yersinia enterocolitica subsp.
          palearctica Y11]
 gi|325664982|gb|ADZ41626.1| transcriptional regulator HU subunit beta [Yersinia
          enterocolitica subsp. palearctica 105.5R(r)]
 gi|330859946|emb|CBX70275.1| DNA-binding protein HU-beta [Yersinia enterocolitica W22703]
          Length = 90

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + +S   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F+A   LK  +
Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKGLKDAV 89


>gi|330959797|gb|EGH60057.1| putative DNA-binding protein HU [Pseudomonas syringae pv.
          maculicola str. ES4326]
          Length = 90

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + + V +++++ GL++ D+ R V  +   I D+  +G+A+    F  F VKQ   R G
Sbjct: 1  MNKGEFVDAVAEKAGLTKADTQRAVDAVLETITDTLRKGDAVSFVGFGNFSVKQTAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T   + I   +   F A   LK  +
Sbjct: 61 RNPSTGASITIAAAKKPHFAAGKSLKDAL 89


>gi|116749538|ref|YP_846225.1| histone family protein DNA-binding protein [Syntrophobacter
          fumaroxidans MPOB]
 gi|116698602|gb|ABK17790.1| histone family protein DNA-binding protein [Syntrophobacter
          fumaroxidans MPOB]
          Length = 90

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  I+   G+++  + + V      +  +   GE + +  F TF V  +  R G
Sbjct: 1  MTKADLVSKIAGAGGITKAQAEKAVDGFVAAVSQALSTGEKVTLVGFGTFSVGSRSQREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +++KI   +VV FK    L  ++
Sbjct: 61 RNPRTGEKIKIPASKVVKFKPGKSLSDKV 89


>gi|266619816|ref|ZP_06112751.1| DNA-binding protein HU [Clostridium hathewayi DSM 13479]
 gi|288868604|gb|EFD00903.1| DNA-binding protein HU [Clostridium hathewayi DSM 13479]
          Length = 91

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  LS+KD+ + V    + + +  V G  I++  F TF V ++ +R G
Sbjct: 1  MNKTELIAAVAEKAELSKKDAEKAVKAFTDVVSEELVNGGKIQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN ++ + + I   +   FKA   LK
Sbjct: 61 RNPKSGEVMNIPASKTPKFKAGKALK 86


>gi|241663131|ref|YP_002981491.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12D]
 gi|240865158|gb|ACS62819.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12D]
          Length = 90

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  ++ +  +S+  + R +  L + I D+   G ++ +  F TF V ++ SR G
Sbjct: 1  MNKTDLIDHVAAQTDMSKAAAGRAIDALIDGIKDALCEGGSVTLVGFGTFLVGKRSSRNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   + I+  +V  FK    LK
Sbjct: 61 RNPRTGAAITIEGGKVAKFKPGKALK 86


>gi|283852806|ref|ZP_06370069.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          FW1012B]
 gi|283571798|gb|EFC19795.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          FW1012B]
          Length = 91

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRK-DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + ++D++  I    G++ K ++ + +  +   I DS V GEA+ ++ F TF V ++ +R 
Sbjct: 1  MAKTDIIAKIQANAGIATKAEAGKVLDAVLGAIQDSLVSGEALTLTGFGTFKVSERAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GR+ +T   + I   + V F     LK  +
Sbjct: 61 GRDPRTGNAIDIPASKAVRFTPGKTLKDAV 90


>gi|312113689|ref|YP_004011285.1| integration host factor subunit beta [Rhodomicrobium vannielii
          ATCC 17100]
 gi|311218818|gb|ADP70186.1| integration host factor, beta subunit [Rhodomicrobium vannielii
          ATCC 17100]
          Length = 110

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ ++     L  +D  + V  +F EI  +  +G+ +++  F  F VK + +RV
Sbjct: 1  MIKSELIEKLAATNPHLMHRDVEKIVNVIFEEITGALTKGDRVELRGFGAFSVKHRPARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  +V +  + V  FK    L+ R+
Sbjct: 61 GRNPRTGDQVSVPEKFVPYFKTGKELRIRL 90


>gi|218702635|ref|YP_002410264.1| transcriptional regulator HU subunit alpha [Escherichia coli
          IAI39]
 gi|218372621|emb|CAR20496.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli IAI39]
          Length = 90

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIAEKAELSKNQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+KI    V  F +   LK
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALK 86


>gi|59801191|ref|YP_207903.1| DbhA [Neisseria gonorrhoeae FA 1090]
 gi|194098662|ref|YP_002001724.1| DbhA [Neisseria gonorrhoeae NCCP11945]
 gi|239998975|ref|ZP_04718899.1| DbhA [Neisseria gonorrhoeae 35/02]
 gi|240014114|ref|ZP_04721027.1| DbhA [Neisseria gonorrhoeae DGI18]
 gi|240016549|ref|ZP_04723089.1| DbhA [Neisseria gonorrhoeae FA6140]
 gi|240080673|ref|ZP_04725216.1| DbhA [Neisseria gonorrhoeae FA19]
 gi|240112961|ref|ZP_04727451.1| DbhA [Neisseria gonorrhoeae MS11]
 gi|240115715|ref|ZP_04729777.1| DbhA [Neisseria gonorrhoeae PID18]
 gi|240118011|ref|ZP_04732073.1| DbhA [Neisseria gonorrhoeae PID1]
 gi|240121676|ref|ZP_04734638.1| DbhA [Neisseria gonorrhoeae PID24-1]
 gi|240123565|ref|ZP_04736521.1| DbhA [Neisseria gonorrhoeae PID332]
 gi|240125747|ref|ZP_04738633.1| DbhA [Neisseria gonorrhoeae SK-92-679]
 gi|240128269|ref|ZP_04740930.1| DbhA [Neisseria gonorrhoeae SK-93-1035]
 gi|254493764|ref|ZP_05106935.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae 1291]
 gi|260440472|ref|ZP_05794288.1| DbhA [Neisseria gonorrhoeae DGI2]
 gi|268594821|ref|ZP_06128988.1| DNA-binding protein [Neisseria gonorrhoeae 35/02]
 gi|268596797|ref|ZP_06130964.1| DNA-binding protein [Neisseria gonorrhoeae FA19]
 gi|268599038|ref|ZP_06133205.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae MS11]
 gi|268601391|ref|ZP_06135558.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID18]
 gi|268603720|ref|ZP_06137887.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID1]
 gi|268682191|ref|ZP_06149053.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID332]
 gi|268684342|ref|ZP_06151204.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae SK-92-679]
 gi|268686663|ref|ZP_06153525.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae SK-93-1035]
 gi|291043776|ref|ZP_06569492.1| DNA-binding protein [Neisseria gonorrhoeae DGI2]
 gi|293399057|ref|ZP_06643222.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae F62]
 gi|59718086|gb|AAW89491.1| putative DNA-binding protein Hu [Neisseria gonorrhoeae FA 1090]
 gi|193933952|gb|ACF29776.1| DbhA [Neisseria gonorrhoeae NCCP11945]
 gi|226512804|gb|EEH62149.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae 1291]
 gi|268548210|gb|EEZ43628.1| DNA-binding protein [Neisseria gonorrhoeae 35/02]
 gi|268550585|gb|EEZ45604.1| DNA-binding protein [Neisseria gonorrhoeae FA19]
 gi|268583169|gb|EEZ47845.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae MS11]
 gi|268585522|gb|EEZ50198.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID18]
 gi|268587851|gb|EEZ52527.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID1]
 gi|268622475|gb|EEZ54875.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID332]
 gi|268624626|gb|EEZ57026.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae SK-92-679]
 gi|268626947|gb|EEZ59347.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae SK-93-1035]
 gi|291012239|gb|EFE04228.1| DNA-binding protein [Neisseria gonorrhoeae DGI2]
 gi|291610471|gb|EFF39581.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae F62]
          Length = 89

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I++E  +S+  + + +    N + ++  +G+ + +  F TF+V ++  R G
Sbjct: 1  MNKSELIEAIAQEADISKAAAQKALDATTNAVTNALKQGDTVTLVGFGTFYVGERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + + I   + + F+A   LK
Sbjct: 61 RNPKTGEPLTIAAAKTLKFRAGKALK 86


>gi|153854753|ref|ZP_01995987.1| hypothetical protein DORLON_01985 [Dorea longicatena DSM 13814]
 gi|149752660|gb|EDM62591.1| hypothetical protein DORLON_01985 [Dorea longicatena DSM 13814]
          Length = 91

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+ +  LS+KDS + +    + + +   +   +++  F TF V  +  R G
Sbjct: 1  MNKTELIAAIADQAELSKKDSEKALKAFIDVVTEELKKEHKVQVVGFGTFEVSMRAEREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + +KI   +   FKA   LK  I
Sbjct: 61 RNPQTGETMKIAACKAPKFKAGKALKDAI 89


>gi|167771525|ref|ZP_02443578.1| hypothetical protein ANACOL_02895 [Anaerotruncus colihominis DSM
          17241]
 gi|167666165|gb|EDS10295.1| hypothetical protein ANACOL_02895 [Anaerotruncus colihominis DSM
          17241]
          Length = 92

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L+ +++++ GLS+KDS + V  +   I ++   G+ + +  F TF  K +  R G
Sbjct: 1  MTKAELITAVAEKSGLSKKDSEKAVGAIVETITEALKAGDKVALVGFGTFETKHRKERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N  T + + I    V  F A   LK
Sbjct: 61 INPITQKPITIAAATVPAFSAGKALK 86


>gi|332878124|ref|ZP_08445853.1| putative DNA-binding protein HU-alpha [Capnocytophaga sp. oral
          taxon 329 str. F0087]
 gi|332683862|gb|EGJ56730.1| putative DNA-binding protein HU-alpha [Capnocytophaga sp. oral
          taxon 329 str. F0087]
          Length = 96

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 49/94 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++V  IS + GL + +    V    +E+ +S   G+ + +  F +F +K +  + G
Sbjct: 1  MTKAEIVSKISDKSGLDKNEVQLIVENFMDEVINSLKDGQNVYLRGFGSFIIKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN+  N  +KI    +  FK + +    + D+++
Sbjct: 61 RNISKNTTLKIPAHNIPAFKPAKVFVDTVKDNVK 94


>gi|291615778|ref|YP_003518520.1| HupA [Pantoea ananatis LMG 20103]
 gi|329296840|ref|ZP_08254176.1| transcriptional regulator HU subunit alpha [Plautia stali
          symbiont]
 gi|291150808|gb|ADD75392.1| HupA [Pantoea ananatis LMG 20103]
 gi|327396044|dbj|BAK13466.1| DNA-binding protein HU-alpha HupA [Pantoea ananatis AJ13355]
          Length = 90

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIAEKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89


>gi|256112658|ref|ZP_05453579.1| integration host factor subunit beta [Brucella melitensis bv. 3
          str. Ether]
 gi|265994098|ref|ZP_06106655.1| integration host factor subunit beta [Brucella melitensis bv. 3
          str. Ether]
 gi|262765079|gb|EEZ11000.1| integration host factor subunit beta [Brucella melitensis bv. 3
          str. Ether]
          Length = 94

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I S+   L ++D    V  +F+EI ++   G  +++  F  F VK + +R 
Sbjct: 1  MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPTRS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FK    L+ R+
Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRL 90


>gi|54309795|ref|YP_130815.1| putative nucleoid DNA-binding protein [Photobacterium profundum
           SS9]
 gi|46914233|emb|CAG21013.1| putative bacterial nucleoid DNA-binding protein [Photobacterium
           profundum SS9]
          Length = 103

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 46/89 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV  I++   +S+  + R +    + +  +   G+ + +  F TF V+ + +R G
Sbjct: 13  VNKTQLVDKIAESADISKASAGRALDAFIDAVSGTLKDGDQVALVGFGTFSVRDRAARTG 72

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN QT +E++I   +V  FK    LK  +
Sbjct: 73  RNPQTGEEIQIAAAKVPGFKPGKALKDSV 101


>gi|54310488|ref|YP_131508.1| putative DNA-binding protein HU-alpha [Photobacterium profundum
          SS9]
 gi|46914931|emb|CAG21706.1| putative DNA-binding protein HU-alpha [Photobacterium profundum
          SS9]
          Length = 90

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +    I D+   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDQIAEKADLSKAQAKLALESTLEGITDALKDGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT QE++I    V  F +   LK
Sbjct: 61 RNPQTGQEIQIAAANVPAFVSGKALK 86


>gi|23501064|ref|NP_697191.1| integration host factor subunit beta [Brucella suis 1330]
 gi|148559718|ref|YP_001258186.1| integration host factor subunit beta [Brucella ovis ATCC 25840]
 gi|153007510|ref|YP_001368725.1| integration host factor subunit beta [Ochrobactrum anthropi ATCC
          49188]
 gi|161618141|ref|YP_001592028.1| integration host factor subunit beta [Brucella canis ATCC 23365]
 gi|163842423|ref|YP_001626827.1| integration host factor subunit beta [Brucella suis ATCC 23445]
 gi|254700962|ref|ZP_05162790.1| integration host factor subunit beta [Brucella suis bv. 5 str.
          513]
 gi|254705332|ref|ZP_05167160.1| integration host factor subunit beta [Brucella suis bv. 3 str.
          686]
 gi|254707154|ref|ZP_05168982.1| integration host factor subunit beta [Brucella pinnipedialis
          M163/99/10]
 gi|254709302|ref|ZP_05171113.1| integration host factor subunit beta [Brucella pinnipedialis
          B2/94]
 gi|254713275|ref|ZP_05175086.1| integration host factor subunit beta [Brucella ceti M644/93/1]
 gi|254716372|ref|ZP_05178183.1| integration host factor subunit beta [Brucella ceti M13/05/1]
 gi|254718369|ref|ZP_05180180.1| integration host factor subunit beta [Brucella sp. 83/13]
 gi|256030825|ref|ZP_05444439.1| integration host factor subunit beta [Brucella pinnipedialis
          M292/94/1]
 gi|256060295|ref|ZP_05450468.1| integration host factor subunit beta [Brucella neotomae 5K33]
 gi|256158850|ref|ZP_05456707.1| integration host factor subunit beta [Brucella ceti M490/95/1]
 gi|256254231|ref|ZP_05459767.1| integration host factor subunit beta [Brucella ceti B1/94]
 gi|256368617|ref|YP_003106123.1| integration host factor beta subunit [Brucella microti CCM 4915]
 gi|260169729|ref|ZP_05756540.1| integration host factor subunit beta [Brucella sp. F5/99]
 gi|260567209|ref|ZP_05837679.1| integration host factor subunit beta [Brucella suis bv. 4 str.
          40]
 gi|261218154|ref|ZP_05932435.1| integration host factor subunit beta [Brucella ceti M13/05/1]
 gi|261221380|ref|ZP_05935661.1| integration host factor subunit beta [Brucella ceti B1/94]
 gi|261314632|ref|ZP_05953829.1| integration host factor subunit beta [Brucella pinnipedialis
          M163/99/10]
 gi|261316811|ref|ZP_05956008.1| integration host factor subunit beta [Brucella pinnipedialis
          B2/94]
 gi|261320998|ref|ZP_05960195.1| integration host factor subunit beta [Brucella ceti M644/93/1]
 gi|261324267|ref|ZP_05963464.1| integration host factor subunit beta [Brucella neotomae 5K33]
 gi|261751480|ref|ZP_05995189.1| integration host factor subunit beta [Brucella suis bv. 5 str.
          513]
 gi|261756043|ref|ZP_05999752.1| integration host factor subunit beta [Brucella suis bv. 3 str.
          686]
 gi|261759267|ref|ZP_06002976.1| integration host factor subunit beta [Brucella sp. F5/99]
 gi|265983330|ref|ZP_06096065.1| integration host factor subunit beta [Brucella sp. 83/13]
 gi|265987880|ref|ZP_06100437.1| integration host factor subunit beta [Brucella pinnipedialis
          M292/94/1]
 gi|265997341|ref|ZP_06109898.1| integration host factor subunit beta [Brucella ceti M490/95/1]
 gi|306839600|ref|ZP_07472404.1| integration host factor, beta subunit [Brucella sp. NF 2653]
 gi|306844421|ref|ZP_07477011.1| integration host factor, beta subunit [Brucella sp. BO1]
 gi|38258168|sp|Q8G304|IHFB_BRUSU RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|166918542|sp|A5VN89|IHFB_BRUO2 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|166918556|sp|A6WV92|IHFB_OCHA4 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|189045033|sp|A9M798|IHFB_BRUC2 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|189045034|sp|B0CIR1|IHFB_BRUSI RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|23346931|gb|AAN29106.1| integration host factor, beta subunit [Brucella suis 1330]
 gi|148370975|gb|ABQ60954.1| integration host factor, beta subunit [Brucella ovis ATCC 25840]
 gi|151559398|gb|ABS12896.1| integration host factor, beta subunit [Ochrobactrum anthropi ATCC
          49188]
 gi|161334952|gb|ABX61257.1| integration host factor, beta subunit [Brucella canis ATCC 23365]
 gi|163673146|gb|ABY37257.1| integration host factor, beta subunit [Brucella suis ATCC 23445]
 gi|255998775|gb|ACU47174.1| integration host factor beta subunit [Brucella microti CCM 4915]
 gi|260156727|gb|EEW91807.1| integration host factor subunit beta [Brucella suis bv. 4 str.
          40]
 gi|260919964|gb|EEX86617.1| integration host factor subunit beta [Brucella ceti B1/94]
 gi|260923243|gb|EEX89811.1| integration host factor subunit beta [Brucella ceti M13/05/1]
 gi|261293688|gb|EEX97184.1| integration host factor subunit beta [Brucella ceti M644/93/1]
 gi|261296034|gb|EEX99530.1| integration host factor subunit beta [Brucella pinnipedialis
          B2/94]
 gi|261300247|gb|EEY03744.1| integration host factor subunit beta [Brucella neotomae 5K33]
 gi|261303658|gb|EEY07155.1| integration host factor subunit beta [Brucella pinnipedialis
          M163/99/10]
 gi|261739251|gb|EEY27247.1| integration host factor subunit beta [Brucella sp. F5/99]
 gi|261741233|gb|EEY29159.1| integration host factor subunit beta [Brucella suis bv. 5 str.
          513]
 gi|261745796|gb|EEY33722.1| integration host factor subunit beta [Brucella suis bv. 3 str.
          686]
 gi|262551809|gb|EEZ07799.1| integration host factor subunit beta [Brucella ceti M490/95/1]
 gi|264660077|gb|EEZ30338.1| integration host factor subunit beta [Brucella pinnipedialis
          M292/94/1]
 gi|264661922|gb|EEZ32183.1| integration host factor subunit beta [Brucella sp. 83/13]
 gi|306275234|gb|EFM56984.1| integration host factor, beta subunit [Brucella sp. BO1]
 gi|306405298|gb|EFM61573.1| integration host factor, beta subunit [Brucella sp. NF 2653]
          Length = 94

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I S+   L ++D    V  +F+EI ++   G  +++  F  F VK + +R 
Sbjct: 1  MIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FK    L+ R+
Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKELRDRL 90


>gi|118580308|ref|YP_901558.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
 gi|118503018|gb|ABK99500.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
          Length = 90

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +TRS+LV+ +S    +S   + + V  +F  + D+ + G+ I+I  F +F  +    R G
Sbjct: 1  MTRSELVEQLSVRKDISIGTAEKIVQEIFGSMTDTLIAGDRIEIRGFGSFENRDYDERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN ++  EV +  ++   FK    LK+RI+
Sbjct: 61 RNPKSGIEVSVAAKKRPFFKVGKDLKERIL 90


>gi|154246162|ref|YP_001417120.1| integration host factor subunit beta [Xanthobacter autotrophicus
          Py2]
 gi|226709820|sp|A7IHH0|IHFB_XANP2 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|154160247|gb|ABS67463.1| integration host factor, beta subunit [Xanthobacter autotrophicus
          Py2]
          Length = 94

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  +  ++  +  RG+ +++  F  F VK++ +RV
Sbjct: 1  MIKSELVQKIAEANPHLYQRDVENIVNAILEQVASALERGDRVELRGFGAFSVKKRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++V +  + V  FK    +++R+
Sbjct: 61 GRNPRTGKQVDVSEKTVPYFKTGKEMRERL 90


>gi|188591467|ref|YP_001796066.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Cupriavidus taiwanensis]
 gi|170938862|emb|CAP63863.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Cupriavidus taiwanensis LMG 19424]
          Length = 92

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ +I+    GL++  + + +    + I D+  RG+A+ +  F +F   ++G R+
Sbjct: 1  MTKSELIDAIAAGVDGLTKAKAEQALNVTLSAIMDTVARGDALNLVGFGSFSKGERGERI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFK 84
           RN +T +++ +D  + V F+
Sbjct: 61 ARNPRTGEKITVDAAKTVKFR 81


>gi|85058119|ref|YP_453821.1| transcriptional regulator HU subunit alpha [Sodalis glossinidius
          str. 'morsitans']
 gi|84778639|dbj|BAE73416.1| DNA-binding protein HU-alpha (HU-2) [Sodalis glossinidius str.
          'morsitans']
          Length = 90

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF +  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKAQAKSALESTLAAITESLKEGDAVQLVGFGTFKINHRSERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V VF +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPVFVSGKALKDAV 89


>gi|94499400|ref|ZP_01305937.1| integration host factor, beta subunit [Oceanobacter sp. RED65]
 gi|94428154|gb|EAT13127.1| integration host factor, beta subunit [Oceanobacter sp. RED65]
          Length = 101

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 1/96 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I+ K   +S KD    V T+ + +  +  +GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERITEKHPEMSAKDIELAVKTILDTMSQALSQGERIEIRGFGSFSLHFRNPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T + V +  + V  FK    L++++ D + G
Sbjct: 61 GRNPKTGEAVPLKGKYVPHFKPGKELREQVNDLVNG 96


>gi|19912729|dbj|BAB88647.1| histone-like protein [Streptococcus intermedius]
 gi|187936837|dbj|BAG32216.1| histone-like DNA binding protein [Streptococcus intermedius]
          Length = 91

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+  +++   L++KDS   V  +F  + +    GE +++  F  F V+++ +R GRN
Sbjct: 4  KQDLIAKVAEATELTKKDSAAAVDAVFAAVTEFLSAGEKVQLIGFGNFEVRERAARKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E+ I   +V  FKA   LK
Sbjct: 64 PQTGKEITIAASKVPAFKAGKALK 87


>gi|91977359|ref|YP_570018.1| histone-like DNA-binding protein [Rhodopseudomonas palustris BisB5]
 gi|91683815|gb|ABE40117.1| histone-like DNA-binding protein [Rhodopseudomonas palustris BisB5]
          Length = 103

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T   L  ++++E  LS+K +   +  L   I     +GE I+I       V+++ +R 
Sbjct: 14  TVTLKHLAAALAEEHELSKKQTEAILGDLVARITKHLKKGERIRIVGLGILQVRKRAART 73

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN  T + ++I   + V F+A+  LK+ I
Sbjct: 74  GRNPATGETIQIKASKKVAFRAAKELKEAI 103


>gi|226944450|ref|YP_002799523.1| histone-like DNA-binding protein [Azotobacter vinelandii DJ]
 gi|226719377|gb|ACO78548.1| histone-like bacterial DNA-binding protein [Azotobacter
          vinelandii DJ]
          Length = 90

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  +   +  +   G+++ +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I+  ++  FKA   LK  +
Sbjct: 61 RNPQTGKPINIEAAKIPGFKAGKALKDAV 89


>gi|89072100|ref|ZP_01158696.1| DNA-binding protein HU [Photobacterium sp. SKA34]
 gi|90580382|ref|ZP_01236188.1| DNA-binding protein HU [Vibrio angustum S14]
 gi|89052201|gb|EAR57652.1| DNA-binding protein HU [Photobacterium sp. SKA34]
 gi|90438291|gb|EAS63476.1| DNA-binding protein HU [Vibrio angustum S14]
          Length = 91

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLV  I+++  ++++ +T  +  +   I  + + G  + +  F TF V  + +R+G
Sbjct: 1  MNKKDLVSHIAEQADINKEHATAALNAIVESITSALIDGNDVSLVGFGTFKVTHRAARIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + ++I   +   FKA   LK ++
Sbjct: 61 RNPKTGEAIQIAASKSPTFKAGKELKAQV 89


>gi|190014801|ref|YP_001967565.1| VirN [Agrobacterium tumefaciens]
 gi|71849604|gb|AAZ50552.1| VirN [Agrobacterium tumefaciens]
          Length = 100

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 20  LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
           L R+D+   V ++ +EI  +  RGE ++I  F TF V+ + +R GRN      V ++ + 
Sbjct: 17  LHRRDAENAVDSVLDEITGALERGERVEIRGFGTFVVRHRPARSGRNPLNGNAVLVEEKW 76

Query: 80  VVVFKASSILKKRI--MDDMRGRK 101
           V  F+A   +K R+   ++ RG++
Sbjct: 77  VPFFRAGKEIKDRLNMAEEPRGKE 100


>gi|332998852|gb|EGK18447.1| DNA-binding protein HU-alpha [Shigella flexneri K-272]
 gi|333014312|gb|EGK33666.1| DNA-binding protein HU-alpha [Shigella flexneri K-227]
          Length = 90

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+KI    V  F +   LK
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALK 86


>gi|103486981|ref|YP_616542.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256]
 gi|98977058|gb|ABF53209.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256]
          Length = 92

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+LV+ I+ E   L  ++  R V T F+ I D    G  +++  F  F  + + SR 
Sbjct: 1  MIRSELVQKIANENSDLRVEEVERIVDTFFDSIVDQLATGGRVELRGFGAFSTRARESRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V++  ++V  FK    +++R+
Sbjct: 61 GRNPRTGAAVEVKAKKVPYFKPGKEMRERL 90


>gi|326796011|ref|YP_004313831.1| Integration host factor subunit beta [Marinomonas mediterranea
           MMB-1]
 gi|326546775|gb|ADZ91995.1| Integration host factor subunit beta [Marinomonas mediterranea
           MMB-1]
          Length = 101

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 2/101 (1%)

Query: 5   ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L++  I ++  L  KD    +  + + + +S   GE I+I  F +F +  +  RV
Sbjct: 1   MTKSELIEMLIDQQSHLPVKDVELAIKAVLDHMSESLANGERIEIRGFGSFSLHYRAPRV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI-MDDMRGRKCN 103
           GRN +T + V++  + V  FK    L++ + +DD    + N
Sbjct: 61  GRNPKTGESVELTAKYVPHFKPGKELRELVNLDDTAHHELN 101


>gi|238760269|ref|ZP_04621413.1| DNA-binding protein HU-alpha [Yersinia aldovae ATCC 35236]
 gi|238701533|gb|EEP94106.1| DNA-binding protein HU-alpha [Yersinia aldovae ATCC 35236]
          Length = 91

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKAQAKAALESTLGAITESLKEGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89


>gi|229825973|ref|ZP_04452042.1| hypothetical protein GCWU000182_01337 [Abiotrophia defectiva ATCC
          49176]
 gi|229789715|gb|EEP25829.1| hypothetical protein GCWU000182_01337 [Abiotrophia defectiva ATCC
          49176]
          Length = 95

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+++  L + D+ + V    + + +   +G  +++  F TF V ++ +R G
Sbjct: 1  MNKAELVSAIAEKTELKKVDAEKAVKAFVDVVTEELKKGGKVQLVGFGTFEVSKRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + +KI       FKA   LK  I
Sbjct: 61 RNPQTKKTIKIPASNAAKFKAGKALKDAI 89


>gi|62289129|ref|YP_220922.1| integration host factor subunit beta [Brucella abortus bv. 1 str.
          9-941]
 gi|82699068|ref|YP_413642.1| integration host factor subunit beta [Brucella melitensis biovar
          Abortus 2308]
 gi|189023405|ref|YP_001934173.1| integration host factor subunit beta [Brucella abortus S19]
 gi|254690457|ref|ZP_05153711.1| integration host factor subunit beta [Brucella abortus bv. 6 str.
          870]
 gi|254694946|ref|ZP_05156774.1| integration host factor subunit beta [Brucella abortus bv. 3 str.
          Tulya]
 gi|254696577|ref|ZP_05158405.1| integration host factor subunit beta [Brucella abortus bv. 2 str.
          86/8/59]
 gi|254731490|ref|ZP_05190068.1| integration host factor subunit beta [Brucella abortus bv. 4 str.
          292]
 gi|256258713|ref|ZP_05464249.1| integration host factor subunit beta [Brucella abortus bv. 9 str.
          C68]
 gi|260546427|ref|ZP_05822167.1| integration host factor subunit beta [Brucella abortus NCTC 8038]
 gi|260756009|ref|ZP_05868357.1| integration host factor subunit beta [Brucella abortus bv. 6 str.
          870]
 gi|260759233|ref|ZP_05871581.1| integration host factor subunit beta [Brucella abortus bv. 4 str.
          292]
 gi|260760955|ref|ZP_05873298.1| integration host factor subunit beta [Brucella abortus bv. 2 str.
          86/8/59]
 gi|260885029|ref|ZP_05896643.1| integration host factor subunit beta [Brucella abortus bv. 9 str.
          C68]
 gi|261215285|ref|ZP_05929566.1| integration host factor subunit beta [Brucella abortus bv. 3 str.
          Tulya]
 gi|297247545|ref|ZP_06931263.1| integration host factor, beta subunit [Brucella abortus bv. 5
          str. B3196]
 gi|75505361|sp|Q57FM3|IHFB_BRUAB RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|123768445|sp|Q2YP18|IHFB_BRUA2 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709771|sp|B2S8E6|IHFB_BRUA1 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|62195261|gb|AAX73561.1| IhfB, integration host factor, beta subunit [Brucella abortus bv.
          1 str. 9-941]
 gi|82615169|emb|CAJ10108.1| Histone-like bacterial DNA-binding protein:Integration host
          factor, beta subunit [Brucella melitensis biovar
          Abortus 2308]
 gi|189018977|gb|ACD71699.1| Histone-like bacterial DNA-binding protein [Brucella abortus S19]
 gi|260096534|gb|EEW80410.1| integration host factor subunit beta [Brucella abortus NCTC 8038]
 gi|260669551|gb|EEX56491.1| integration host factor subunit beta [Brucella abortus bv. 4 str.
          292]
 gi|260671387|gb|EEX58208.1| integration host factor subunit beta [Brucella abortus bv. 2 str.
          86/8/59]
 gi|260676117|gb|EEX62938.1| integration host factor subunit beta [Brucella abortus bv. 6 str.
          870]
 gi|260874557|gb|EEX81626.1| integration host factor subunit beta [Brucella abortus bv. 9 str.
          C68]
 gi|260916892|gb|EEX83753.1| integration host factor subunit beta [Brucella abortus bv. 3 str.
          Tulya]
 gi|297174714|gb|EFH34061.1| integration host factor, beta subunit [Brucella abortus bv. 5
          str. B3196]
          Length = 94

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I S+   L ++D    V  +F+EI ++   G  +++  F  F VK + +R 
Sbjct: 1  MIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FK    L+ R+
Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRL 90


>gi|87303118|ref|ZP_01085916.1| DNA binding protein HU [Synechococcus sp. WH 5701]
 gi|87282285|gb|EAQ74245.1| DNA binding protein HU [Synechococcus sp. WH 5701]
          Length = 91

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ + ++ V      I DS V G+ + I  F +F  +++ +R G
Sbjct: 1  MNKADLVNLVAVRTELTKTEVSKVVDAAIETIVDSVVEGKKVSILGFGSFEARERSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T +++KI  +RV  F A    K ++
Sbjct: 61 LNPKTGEKIKIPAKRVPAFTAGKQFKDKV 89


>gi|91792020|ref|YP_561671.1| histone-like DNA-binding protein [Shewanella denitrificans OS217]
 gi|91714022|gb|ABE53948.1| histone-like DNA-binding protein [Shewanella denitrificans OS217]
          Length = 90

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  I++   L++ ++ R + +    + ++   G+ I I  F +F    + +R G
Sbjct: 1  MNKSELIAKIAENADLTKAEAGRALKSFETAVTEAMKNGDKISIVGFGSFETTSRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I    V  FKA   LK
Sbjct: 61 RNPQTGKEIQIAAATVPKFKAGKTLK 86


>gi|187928947|ref|YP_001899434.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12J]
 gi|187725837|gb|ACD27002.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12J]
          Length = 90

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  ++ +  +S+  + R +  L + I D+   G ++ +  F TF V ++ SR G
Sbjct: 1  MNKTDLIDHVATQTDMSKAAAGRAIDALIDGIKDALCEGGSVTLVGFGTFLVGKRSSRNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   + I+  +V  FK    LK
Sbjct: 61 RNPRTGAAITIEGGKVAKFKPGKALK 86


>gi|332188086|ref|ZP_08389817.1| bacterial DNA-binding family protein [Sphingomonas sp. S17]
 gi|332011934|gb|EGI54008.1| bacterial DNA-binding family protein [Sphingomonas sp. S17]
          Length = 95

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           T SDL + +S   GL++ D+ + +  +   I  +   GE + ++ F  F +K    R GR
Sbjct: 5   TTSDLAEQLSNTHGLAKADARKVIDAILANITAAVATGEEVSLNGFGKFKLKDTPERQGR 64

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           N  T + + I   R + F  +    K + D M G+
Sbjct: 65  NPSTGEAITIAASRKLTFAPA----KAVRDRMNGK 95


>gi|124515197|gb|EAY56708.1| putative histone-like DNA-binding protein [Leptospirillum
          rubarum]
 gi|206603673|gb|EDZ40153.1| Putative histone-like DNA-binding protein [Leptospirillum sp.
          Group II '5-way CG']
          Length = 102

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 4  TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T+T+S+L+ ++  + G L++K  +  V  +F+ I D   +G A+ I  F  FH  ++ +R
Sbjct: 8  TLTKSELIDTLHAKNGTLTKKAVSEVVDQVFSTITDHVAKGTAVNIVGFGKFHAVKRAAR 67

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN  T   +KI       F A    K
Sbjct: 68 TGRNPATGAVIKIAATTTPRFAAGKAFK 95


>gi|262276977|ref|ZP_06054770.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [alpha
          proteobacterium HIMB114]
 gi|262224080|gb|EEY74539.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [alpha
          proteobacterium HIMB114]
          Length = 91

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  LV  IS    LS+ D+ R   ++ N I D+    +A+KI+ F T+ V ++ +R G
Sbjct: 1  MNKKQLVAKISSTLNLSKADAERTFDSITNIILDALKDDDAVKIAGFGTYKVAKRKARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + ++I   + V F  +  LK
Sbjct: 61 RNPRTGETIQISASQKVKFLPAKALK 86


>gi|261210560|ref|ZP_05924853.1| DNA-binding protein HU-beta [Vibrio sp. RC341]
 gi|260840345|gb|EEX66916.1| DNA-binding protein HU-beta [Vibrio sp. RC341]
          Length = 90

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I+    +S+  + R +      +  +   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVEQIAANADISKASAGRALDAFIEAMSGTLQSGDQVALVGFGTFSVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E+KI   +V  FKA   LK
Sbjct: 61 RNPKTGEEIKIAEAKVPSFKAGKALK 86


>gi|103486291|ref|YP_615852.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256]
 gi|98976368|gb|ABF52519.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256]
          Length = 90

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+ +++   GL++ D+++ V  +F+ I  +  +G  +++  F TF V ++ +  G
Sbjct: 1  MNKQDLIAAVADSSGLTKGDASKAVEAVFDAITGALKKGGEVRLVGFGTFAVSKRKASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I       FKA   LK  +
Sbjct: 61 RNPRTGETMTIAASNQPKFKAGKALKDAV 89


>gi|10955165|ref|NP_059821.1| hypothetical protein pTi_149 [Agrobacterium tumefaciens]
 gi|61226436|sp|P0A3I1|IHFB_AGRTU RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|61226439|sp|P0A3I2|IHFB_AGRT9 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|2773264|gb|AAC72021.1| ysa [Agrobacterium tumefaciens]
 gi|11124690|emb|CAC15177.1| IHF beta subunit-like protein [Agrobacterium tumefaciens]
          Length = 102

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV  ++ K   L R+D+   V  + +EI  +  RGE + I SF TF V+ + +R 
Sbjct: 1  MIKSELVDFVAAKNPYLHRRDAENAVDAVLDEITGALERGERVDIRSFGTFVVRHRPARS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN      V I+ + V  F+A   ++ R+
Sbjct: 61 GRNPLNGNAVFIEEKWVPFFRAGKEIRDRL 90


>gi|33602439|ref|NP_889999.1| integration host factor beta-subunit [Bordetella bronchiseptica
          RB50]
 gi|33576878|emb|CAE33958.1| integration host factor beta-subunit [Bordetella bronchiseptica
          RB50]
          Length = 110

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 44/74 (59%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
          L+ +D+   V T+ + +  +   G+ I+I  F +F + Q+  R+GRN ++ ++V +  ++
Sbjct: 8  LAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRIGRNPKSGEQVLVPGKQ 67

Query: 80 VVVFKASSILKKRI 93
          V  FKA   L++R+
Sbjct: 68 VPHFKAGKELRERV 81


>gi|153871697|ref|ZP_02000804.1| DNA-binding protein HU [Beggiatoa sp. PS]
 gi|152071839|gb|EDN69198.1| DNA-binding protein HU [Beggiatoa sp. PS]
          Length = 90

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++++++   +++  + + V  +   I D+    +++ +  F TF V+++ +RVG
Sbjct: 1  MNKSELIQAVAESAEITKGQAGKAVDAVIESIKDALAEADSVTLIGFGTFTVRERAARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I    V VFK    LK  +
Sbjct: 61 RNPRTGERLDIKAANVPVFKPGKALKDAV 89


>gi|90406779|ref|ZP_01214971.1| putative integration host factor, beta subunit [Psychromonas sp.
          CNPT3]
 gi|90312016|gb|EAS40109.1| putative integration host factor, beta subunit [Psychromonas sp.
          CNPT3]
          Length = 95

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+SDL++ ++ K F LS ++    V      + +S  +GE I++  F +F +  +  R+
Sbjct: 1  MTKSDLIEKLTNKHFQLSVREVEDSVKETLQLMTNSLAQGERIEVRGFGSFSLHYRAPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  +V++  + V  FK    L++R+
Sbjct: 61 GRNPKTGDKVELGGKYVPHFKPGKELRERV 90


>gi|15804591|ref|NP_290632.1| transcriptional regulator HU subunit alpha [Escherichia coli
          O157:H7 EDL933]
 gi|15834177|ref|NP_312950.1| transcriptional regulator HU subunit alpha [Escherichia coli
          O157:H7 str. Sakai]
 gi|16131830|ref|NP_418428.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli str. K-12 substr. MG1655]
 gi|24115284|ref|NP_709794.1| transcriptional regulator HU subunit alpha [Shigella flexneri 2a
          str. 301]
 gi|26250771|ref|NP_756811.1| transcriptional regulator HU subunit alpha [Escherichia coli
          CFT073]
 gi|30064718|ref|NP_838889.1| transcriptional regulator HU subunit alpha [Shigella flexneri 2a
          str. 2457T]
 gi|74314494|ref|YP_312913.1| transcriptional regulator HU subunit alpha [Shigella sonnei
          Ss046]
 gi|82546342|ref|YP_410289.1| transcriptional regulator HU subunit alpha [Shigella boydii
          Sb227]
 gi|82778824|ref|YP_405173.1| transcriptional regulator HU subunit alpha [Shigella dysenteriae
          Sd197]
 gi|89110038|ref|AP_003818.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli str. K-12 substr. W3110]
 gi|91212793|ref|YP_542779.1| transcriptional regulator HU subunit alpha [Escherichia coli
          UTI89]
 gi|110644335|ref|YP_672065.1| transcriptional regulator HU subunit alpha [Escherichia coli 536]
 gi|110807850|ref|YP_691370.1| transcriptional regulator HU subunit alpha [Shigella flexneri 5
          str. 8401]
 gi|117626262|ref|YP_859585.1| transcriptional regulator HU subunit alpha [Escherichia coli APEC
          O1]
 gi|157157657|ref|YP_001465495.1| transcriptional regulator HU subunit alpha [Escherichia coli
          E24377A]
 gi|157163469|ref|YP_001460787.1| transcriptional regulator HU subunit alpha [Escherichia coli HS]
 gi|168752035|ref|ZP_02777057.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4113]
 gi|168758604|ref|ZP_02783611.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4401]
 gi|168764580|ref|ZP_02789587.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4501]
 gi|168771472|ref|ZP_02796479.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4486]
 gi|168777387|ref|ZP_02802394.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4196]
 gi|168780385|ref|ZP_02805392.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4076]
 gi|168790360|ref|ZP_02815367.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC869]
 gi|168798366|ref|ZP_02823373.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC508]
 gi|170021997|ref|YP_001726951.1| transcriptional regulator HU subunit alpha [Escherichia coli ATCC
          8739]
 gi|170083461|ref|YP_001732781.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli str. K-12 substr. DH10B]
 gi|170682013|ref|YP_001746384.1| transcriptional regulator HU subunit alpha [Escherichia coli
          SMS-3-5]
 gi|170770125|ref|ZP_02904578.1| DNA-binding protein HU-alpha [Escherichia albertii TW07627]
 gi|187733664|ref|YP_001882686.1| transcriptional regulator HU subunit alpha [Shigella boydii CDC
          3083-94]
 gi|188494754|ref|ZP_03002024.1| DNA-binding protein HU-alpha [Escherichia coli 53638]
 gi|191168661|ref|ZP_03030442.1| DNA-binding protein HU-alpha [Escherichia coli B7A]
 gi|191174297|ref|ZP_03035805.1| DNA-binding protein HU-alpha [Escherichia coli F11]
 gi|193066426|ref|ZP_03047473.1| DNA-binding protein HU-alpha [Escherichia coli E22]
 gi|193067891|ref|ZP_03048857.1| DNA-binding protein HU-alpha [Escherichia coli E110019]
 gi|194429963|ref|ZP_03062472.1| DNA-binding protein HU-alpha [Escherichia coli B171]
 gi|194434756|ref|ZP_03067007.1| DNA-binding protein HU-alpha [Shigella dysenteriae 1012]
 gi|194439785|ref|ZP_03071852.1| DNA-binding protein HU-alpha [Escherichia coli 101-1]
 gi|195939626|ref|ZP_03085008.1| transcriptional regulator HU subunit alpha [Escherichia coli
          O157:H7 str. EC4024]
 gi|208808153|ref|ZP_03250490.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4206]
 gi|208813268|ref|ZP_03254597.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4045]
 gi|208820185|ref|ZP_03260505.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4042]
 gi|209397488|ref|YP_002273516.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4115]
 gi|209921479|ref|YP_002295563.1| transcriptional regulator HU subunit alpha [Escherichia coli
          SE11]
 gi|215489332|ref|YP_002331763.1| transcriptional regulator HU subunit alpha [Escherichia coli
          O127:H6 str. E2348/69]
 gi|217324933|ref|ZP_03441017.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          TW14588]
 gi|218551016|ref|YP_002384807.1| transcriptional regulator HU subunit alpha [Escherichia
          fergusonii ATCC 35469]
 gi|218556555|ref|YP_002389469.1| transcriptional regulator HU subunit alpha [Escherichia coli
          IAI1]
 gi|218561066|ref|YP_002393979.1| transcriptional regulator HU subunit alpha [Escherichia coli S88]
 gi|218692281|ref|YP_002400493.1| transcriptional regulator HU subunit alpha [Escherichia coli
          ED1a]
 gi|218697708|ref|YP_002405375.1| transcriptional regulator HU subunit alpha [Escherichia coli
          55989]
 gi|218707619|ref|YP_002415138.1| transcriptional regulator HU subunit alpha [Escherichia coli
          UMN026]
 gi|227885470|ref|ZP_04003275.1| DNA-binding protein HU-alpha [Escherichia coli 83972]
 gi|237702767|ref|ZP_04533248.1| transcriptional regulator HU subunit alpha [Escherichia sp.
          3_2_53FAA]
 gi|238903057|ref|YP_002928853.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli BW2952]
 gi|253775370|ref|YP_003038201.1| transcriptional regulator HU subunit alpha [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|254039257|ref|ZP_04873306.1| DNA-binding protein HU-alpha [Escherichia sp. 1_1_43]
 gi|254163942|ref|YP_003047050.1| transcriptional regulator HU subunit alpha [Escherichia coli B
          str. REL606]
 gi|254795998|ref|YP_003080835.1| transcriptional regulator HU subunit alpha [Escherichia coli
          O157:H7 str. TW14359]
 gi|256021679|ref|ZP_05435544.1| transcriptional regulator HU subunit alpha [Shigella sp. D9]
 gi|256026316|ref|ZP_05440181.1| transcriptional regulator HU subunit alpha [Escherichia sp.
          4_1_40B]
 gi|260846800|ref|YP_003224578.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli O103:H2 str. 12009]
 gi|260858110|ref|YP_003232001.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli O26:H11 str. 11368]
 gi|260870711|ref|YP_003237113.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli O111:H- str. 11128]
 gi|261227288|ref|ZP_05941569.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257035|ref|ZP_05949568.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli O157:H7 str. FRIK966]
 gi|291285415|ref|YP_003502233.1| DNA-binding protein HU-alpha [Escherichia coli O55:H7 str.
          CB9615]
 gi|293407617|ref|ZP_06651535.1| transcriptional regulator HU subunit beta [Escherichia coli
          FVEC1412]
 gi|293413436|ref|ZP_06656096.1| transcriptional regulator HU subunit beta [Escherichia coli B354]
 gi|293417502|ref|ZP_06660125.1| DNA-binding protein HU-alpha [Escherichia coli B185]
 gi|293474307|ref|ZP_06664716.1| transcriptional regulator HU subunit beta [Escherichia coli B088]
 gi|298383365|ref|ZP_06992957.1| transcriptional regulator HU subunit beta [Escherichia coli
          FVEC1302]
 gi|300819812|ref|ZP_07099999.1| DNA-binding protein HU [Escherichia coli MS 107-1]
 gi|300824619|ref|ZP_07104727.1| DNA-binding protein HU [Escherichia coli MS 119-7]
 gi|300897585|ref|ZP_07115994.1| DNA-binding protein HU [Escherichia coli MS 198-1]
 gi|300907554|ref|ZP_07125192.1| DNA-binding protein HU [Escherichia coli MS 84-1]
 gi|300919418|ref|ZP_07135922.1| DNA-binding protein HU [Escherichia coli MS 115-1]
 gi|300925869|ref|ZP_07141712.1| DNA-binding protein HU [Escherichia coli MS 182-1]
 gi|300928819|ref|ZP_07144327.1| DNA-binding protein HU [Escherichia coli MS 187-1]
 gi|300938775|ref|ZP_07153488.1| DNA-binding protein HU [Escherichia coli MS 21-1]
 gi|300947393|ref|ZP_07161586.1| DNA-binding protein HU [Escherichia coli MS 116-1]
 gi|300954769|ref|ZP_07167199.1| DNA-binding protein HU [Escherichia coli MS 175-1]
 gi|300979674|ref|ZP_07174646.1| DNA-binding protein HU [Escherichia coli MS 45-1]
 gi|300985441|ref|ZP_07177444.1| DNA-binding protein HU [Escherichia coli MS 200-1]
 gi|301019441|ref|ZP_07183614.1| DNA-binding protein HU [Escherichia coli MS 69-1]
 gi|301023370|ref|ZP_07187160.1| DNA-binding protein HU [Escherichia coli MS 196-1]
 gi|301047735|ref|ZP_07194793.1| DNA-binding protein HU [Escherichia coli MS 185-1]
 gi|301302187|ref|ZP_07208319.1| DNA-binding protein HU [Escherichia coli MS 124-1]
 gi|301325708|ref|ZP_07219167.1| DNA-binding protein HU [Escherichia coli MS 78-1]
 gi|301645744|ref|ZP_07245665.1| DNA-binding protein HU [Escherichia coli MS 146-1]
 gi|306812015|ref|ZP_07446223.1| transcriptional regulator HU subunit alpha [Escherichia coli
          NC101]
 gi|307140692|ref|ZP_07500048.1| transcriptional regulator HU subunit alpha [Escherichia coli
          H736]
 gi|307315027|ref|ZP_07594613.1| histone family protein DNA-binding protein [Escherichia coli W]
 gi|309783956|ref|ZP_07678601.1| DNA-binding protein HU-alpha [Shigella dysenteriae 1617]
 gi|309797704|ref|ZP_07692090.1| DNA-binding protein HU [Escherichia coli MS 145-7]
 gi|312965347|ref|ZP_07779580.1| DNA-binding protein HU-alpha [Escherichia coli 2362-75]
 gi|312974214|ref|ZP_07788384.1| DNA-binding protein HU-alpha [Escherichia coli 1827-70]
 gi|331644736|ref|ZP_08345854.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H736]
 gi|331649853|ref|ZP_08350931.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli M605]
 gi|331655700|ref|ZP_08356690.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli M718]
 gi|331660560|ref|ZP_08361493.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli
          TA206]
 gi|331665656|ref|ZP_08366552.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli
          TA143]
 gi|331670854|ref|ZP_08371689.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli
          TA271]
 gi|331675486|ref|ZP_08376235.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli
          TA280]
 gi|331680123|ref|ZP_08380784.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H591]
 gi|331685742|ref|ZP_08386324.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H299]
 gi|332282922|ref|ZP_08395335.1| HU DNA-binding transcriptional regulator alpha subunit [Shigella
          sp. D9]
 gi|82581650|sp|P0ACF2|DBHA_ECO57 RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2;
          AltName: Full=NS2
 gi|82581651|sp|P0ACF1|DBHA_ECOL6 RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2;
          AltName: Full=NS2
 gi|82581652|sp|P0ACF0|DBHA_ECOLI RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2;
          AltName: Full=NS2
 gi|82581653|sp|P0ACF3|DBHA_SHIFL RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2;
          AltName: Full=NS2
 gi|34810779|pdb|1MUL|A Chain A, Crystal Structure Of The E. Coli Hu Alpha2 Protein
 gi|134105078|pdb|2O97|A Chain A, Crystal Structure Of E. Coli Hu Heterodimer
 gi|12518929|gb|AAG59197.1|AE005631_12 DNA-binding protein HU-alpha (HU-2) [Escherichia coli O157:H7
          str. EDL933]
 gi|26111202|gb|AAN83385.1|AE016770_185 DNA-binding protein HU-alpha [Escherichia coli CFT073]
 gi|41765|emb|CAA29412.1| unnamed protein product [Escherichia coli]
 gi|396339|gb|AAC43098.1| histonelike DNA-binding protein HU-alpha (NS2) (HU-2)
          [Escherichia coli str. K-12 substr. MG1655]
 gi|1790433|gb|AAC76974.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli str. K-12 substr. MG1655]
 gi|13364399|dbj|BAB38346.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          Sakai]
 gi|24054578|gb|AAN45501.1| DNA-binding protein HU-alpha (HU-2) [Shigella flexneri 2a str.
          301]
 gi|30042978|gb|AAP18700.1| DNA-binding protein HU-alpha (HU-2) [Shigella flexneri 2a str.
          2457T]
 gi|73857971|gb|AAZ90678.1| DNA-binding protein HU-alpha [Shigella sonnei Ss046]
 gi|81242972|gb|ABB63682.1| DNA-binding protein HU-alpha [Shigella dysenteriae Sd197]
 gi|81247753|gb|ABB68461.1| DNA-binding protein HU-alpha [Shigella boydii Sb227]
 gi|85676069|dbj|BAE77319.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli str. K12 substr. W3110]
 gi|91074367|gb|ABE09248.1| DNA-binding protein HU-alpha (HU-2) [Escherichia coli UTI89]
 gi|110345927|gb|ABG72164.1| DNA-binding protein HU-alpha [Escherichia coli 536]
 gi|110617398|gb|ABF06065.1| DNA-binding protein HU-alpha (HU-2) [Shigella flexneri 5 str.
          8401]
 gi|115515386|gb|ABJ03461.1| DNA-binding protein HU-alpha [Escherichia coli APEC O1]
 gi|157069149|gb|ABV08404.1| DNA-binding protein HU-alpha [Escherichia coli HS]
 gi|157079687|gb|ABV19395.1| DNA-binding protein HU-alpha [Escherichia coli E24377A]
 gi|169756925|gb|ACA79624.1| histone family protein DNA-binding protein [Escherichia coli ATCC
          8739]
 gi|169891296|gb|ACB05003.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli str. K-12 substr. DH10B]
 gi|170121007|gb|EDS89938.1| DNA-binding protein HU-alpha [Escherichia albertii TW07627]
 gi|170519731|gb|ACB17909.1| DNA-binding protein HU-alpha [Escherichia coli SMS-3-5]
 gi|187430656|gb|ACD09930.1| DNA-binding protein HU-alpha [Shigella boydii CDC 3083-94]
 gi|187767348|gb|EDU31192.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4196]
 gi|188014035|gb|EDU52157.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4113]
 gi|188489953|gb|EDU65056.1| DNA-binding protein HU-alpha [Escherichia coli 53638]
 gi|189001743|gb|EDU70729.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4076]
 gi|189354599|gb|EDU73018.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4401]
 gi|189359757|gb|EDU78176.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4486]
 gi|189365455|gb|EDU83871.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4501]
 gi|189370167|gb|EDU88583.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC869]
 gi|189379196|gb|EDU97612.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC508]
 gi|190901301|gb|EDV61069.1| DNA-binding protein HU-alpha [Escherichia coli B7A]
 gi|190905429|gb|EDV65060.1| DNA-binding protein HU-alpha [Escherichia coli F11]
 gi|192925950|gb|EDV80597.1| DNA-binding protein HU-alpha [Escherichia coli E22]
 gi|192958866|gb|EDV89303.1| DNA-binding protein HU-alpha [Escherichia coli E110019]
 gi|194411992|gb|EDX28305.1| DNA-binding protein HU-alpha [Escherichia coli B171]
 gi|194416980|gb|EDX33098.1| DNA-binding protein HU-alpha [Shigella dysenteriae 1012]
 gi|194421282|gb|EDX37302.1| DNA-binding protein HU-alpha [Escherichia coli 101-1]
 gi|208727954|gb|EDZ77555.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4206]
 gi|208734545|gb|EDZ83232.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4045]
 gi|208740308|gb|EDZ87990.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4042]
 gi|209158888|gb|ACI36321.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4115]
 gi|209751678|gb|ACI74146.1| DNA-binding protein HU-alpha [Escherichia coli]
 gi|209751680|gb|ACI74147.1| DNA-binding protein HU-alpha [Escherichia coli]
 gi|209751682|gb|ACI74148.1| DNA-binding protein HU-alpha [Escherichia coli]
 gi|209751684|gb|ACI74149.1| DNA-binding protein HU-alpha [Escherichia coli]
 gi|209751686|gb|ACI74150.1| DNA-binding protein HU-alpha [Escherichia coli]
 gi|209914738|dbj|BAG79812.1| DNA-binding protein [Escherichia coli SE11]
 gi|215267404|emb|CAS11855.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli O127:H6 str. E2348/69]
 gi|217321154|gb|EEC29578.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          TW14588]
 gi|218354440|emb|CAV01252.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli 55989]
 gi|218358557|emb|CAQ91205.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia fergusonii ATCC 35469]
 gi|218363324|emb|CAR00974.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli IAI1]
 gi|218367835|emb|CAR05630.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli S88]
 gi|218429845|emb|CAR10671.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli ED1a]
 gi|218434716|emb|CAR15648.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli UMN026]
 gi|222035711|emb|CAP78456.1| DNA-binding protein HU-alpha [Escherichia coli LF82]
 gi|226838492|gb|EEH70522.1| DNA-binding protein HU-alpha [Escherichia sp. 1_1_43]
 gi|226903080|gb|EEH89339.1| transcriptional regulator HU subunit alpha [Escherichia sp.
          3_2_53FAA]
 gi|227837544|gb|EEJ48010.1| DNA-binding protein HU-alpha [Escherichia coli 83972]
 gi|238861437|gb|ACR63435.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli BW2952]
 gi|242379531|emb|CAQ34347.1| transcriptional dual regulator HU-alpha (HU-2), subunit of HU
          transcriptional dual regulator [Escherichia coli
          BL21(DE3)]
 gi|253326414|gb|ACT31016.1| histone family protein DNA-binding protein [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253975843|gb|ACT41514.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli B str. REL606]
 gi|253979999|gb|ACT45669.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli BL21(DE3)]
 gi|254595398|gb|ACT74759.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli O157:H7 str. TW14359]
 gi|257756759|dbj|BAI28261.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli O26:H11 str. 11368]
 gi|257761947|dbj|BAI33444.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli O103:H2 str. 12009]
 gi|257767067|dbj|BAI38562.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli O111:H- str. 11128]
 gi|260451172|gb|ACX41594.1| histone family protein DNA-binding protein [Escherichia coli DH1]
 gi|281181064|dbj|BAI57394.1| DNA-binding protein [Escherichia coli SE15]
 gi|281603384|gb|ADA76368.1| DNA-binding protein HU-alpha [Shigella flexneri 2002017]
 gi|290765288|gb|ADD59249.1| DNA-binding protein HU-alpha [Escherichia coli O55:H7 str.
          CB9615]
 gi|291321337|gb|EFE60778.1| transcriptional regulator HU subunit beta [Escherichia coli B088]
 gi|291425385|gb|EFE98425.1| transcriptional regulator HU subunit beta [Escherichia coli
          FVEC1412]
 gi|291430829|gb|EFF03826.1| DNA-binding protein HU-alpha [Escherichia coli B185]
 gi|291468031|gb|EFF10530.1| transcriptional regulator HU subunit beta [Escherichia coli B354]
 gi|294490664|gb|ADE89420.1| DNA-binding protein HU-alpha [Escherichia coli IHE3034]
 gi|298276244|gb|EFI17765.1| transcriptional regulator HU subunit beta [Escherichia coli
          FVEC1302]
 gi|299880890|gb|EFI89101.1| DNA-binding protein HU [Escherichia coli MS 196-1]
 gi|300300380|gb|EFJ56765.1| DNA-binding protein HU [Escherichia coli MS 185-1]
 gi|300306533|gb|EFJ61053.1| DNA-binding protein HU [Escherichia coli MS 200-1]
 gi|300318268|gb|EFJ68052.1| DNA-binding protein HU [Escherichia coli MS 175-1]
 gi|300358661|gb|EFJ74531.1| DNA-binding protein HU [Escherichia coli MS 198-1]
 gi|300399256|gb|EFJ82794.1| DNA-binding protein HU [Escherichia coli MS 69-1]
 gi|300400721|gb|EFJ84259.1| DNA-binding protein HU [Escherichia coli MS 84-1]
 gi|300409458|gb|EFJ92996.1| DNA-binding protein HU [Escherichia coli MS 45-1]
 gi|300413511|gb|EFJ96821.1| DNA-binding protein HU [Escherichia coli MS 115-1]
 gi|300418059|gb|EFK01370.1| DNA-binding protein HU [Escherichia coli MS 182-1]
 gi|300452997|gb|EFK16617.1| DNA-binding protein HU [Escherichia coli MS 116-1]
 gi|300456285|gb|EFK19778.1| DNA-binding protein HU [Escherichia coli MS 21-1]
 gi|300463200|gb|EFK26693.1| DNA-binding protein HU [Escherichia coli MS 187-1]
 gi|300522868|gb|EFK43937.1| DNA-binding protein HU [Escherichia coli MS 119-7]
 gi|300527633|gb|EFK48695.1| DNA-binding protein HU [Escherichia coli MS 107-1]
 gi|300842350|gb|EFK70110.1| DNA-binding protein HU [Escherichia coli MS 124-1]
 gi|300847497|gb|EFK75257.1| DNA-binding protein HU [Escherichia coli MS 78-1]
 gi|301075993|gb|EFK90799.1| DNA-binding protein HU [Escherichia coli MS 146-1]
 gi|305854620|gb|EFM55056.1| transcriptional regulator HU subunit alpha [Escherichia coli
          NC101]
 gi|306905532|gb|EFN36065.1| histone family protein DNA-binding protein [Escherichia coli W]
 gi|307556143|gb|ADN48918.1| DNA-binding protein HU-alpha [Escherichia coli ABU 83972]
 gi|307628383|gb|ADN72687.1| transcriptional regulator HU subunit alpha [Escherichia coli
          UM146]
 gi|308118716|gb|EFO55978.1| DNA-binding protein HU [Escherichia coli MS 145-7]
 gi|308928327|gb|EFP73789.1| DNA-binding protein HU-alpha [Shigella dysenteriae 1617]
 gi|309704416|emb|CBJ03765.1| DNA-binding protein HU-alpha [Escherichia coli ETEC H10407]
 gi|310331381|gb|EFP98646.1| DNA-binding protein HU-alpha [Escherichia coli 1827-70]
 gi|312290021|gb|EFR17908.1| DNA-binding protein HU-alpha [Escherichia coli 2362-75]
 gi|312948574|gb|ADR29401.1| transcriptional regulator HU subunit alpha [Escherichia coli
          O83:H1 str. NRG 857C]
 gi|313648650|gb|EFS13090.1| DNA-binding protein HU-alpha [Shigella flexneri 2a str. 2457T]
 gi|315063325|gb|ADT77652.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli W]
 gi|315138557|dbj|BAJ45716.1| DNA-binding protein HU-alpha [Escherichia coli DH1]
 gi|315252732|gb|EFU32700.1| DNA-binding protein HU [Escherichia coli MS 85-1]
 gi|315288345|gb|EFU47744.1| DNA-binding protein HU [Escherichia coli MS 110-3]
 gi|315294343|gb|EFU53694.1| DNA-binding protein HU [Escherichia coli MS 153-1]
 gi|315300743|gb|EFU59968.1| DNA-binding protein HU [Escherichia coli MS 16-3]
 gi|315617364|gb|EFU97970.1| DNA-binding protein HU-alpha [Escherichia coli 3431]
 gi|320172738|gb|EFW47972.1| DNA-binding protein HU-alpha [Shigella dysenteriae CDC 74-1112]
 gi|320179537|gb|EFW54488.1| DNA-binding protein HU-alpha [Shigella boydii ATCC 9905]
 gi|320185960|gb|EFW60708.1| DNA-binding protein HU-alpha [Shigella flexneri CDC 796-83]
 gi|320190903|gb|EFW65553.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC1212]
 gi|320197105|gb|EFW71723.1| DNA-binding protein HU-alpha [Escherichia coli WV_060327]
 gi|320200160|gb|EFW74749.1| DNA-binding protein HU-alpha [Escherichia coli EC4100B]
 gi|320639091|gb|EFX08731.1| transcriptional regulator HU subunit alpha [Escherichia coli
          O157:H7 str. G5101]
 gi|320644485|gb|EFX13548.1| transcriptional regulator HU subunit alpha [Escherichia coli
          O157:H- str. 493-89]
 gi|320649804|gb|EFX18325.1| transcriptional regulator HU subunit alpha [Escherichia coli
          O157:H- str. H 2687]
 gi|320655137|gb|EFX23093.1| transcriptional regulator HU subunit alpha [Escherichia coli
          O55:H7 str. 3256-97 TW 07815]
 gi|320660781|gb|EFX28235.1| transcriptional regulator HU subunit alpha [Escherichia coli
          O55:H7 str. USDA 5905]
 gi|320665899|gb|EFX32930.1| transcriptional regulator HU subunit alpha [Escherichia coli
          O157:H7 str. LSU-61]
 gi|323155552|gb|EFZ41729.1| DNA-binding protein HU-alpha [Escherichia coli EPECa14]
 gi|323161308|gb|EFZ47217.1| DNA-binding protein HU-alpha [Escherichia coli E128010]
 gi|323167470|gb|EFZ53178.1| DNA-binding protein HU-alpha [Shigella sonnei 53G]
 gi|323174488|gb|EFZ60113.1| DNA-binding protein HU-alpha [Escherichia coli LT-68]
 gi|323177555|gb|EFZ63140.1| DNA-binding protein HU-alpha [Escherichia coli 1180]
 gi|323182099|gb|EFZ67509.1| DNA-binding protein HU-alpha [Escherichia coli 1357]
 gi|323190143|gb|EFZ75421.1| DNA-binding protein HU-alpha [Escherichia coli RN587/1]
 gi|323380611|gb|ADX52879.1| histone family protein DNA-binding protein [Escherichia coli
          KO11]
 gi|323933958|gb|EGB30432.1| bacterial DNA-binding protein [Escherichia coli E1520]
 gi|323938883|gb|EGB35103.1| DNA-binding protein [Escherichia coli E482]
 gi|323943611|gb|EGB39719.1| bacterial DNA-binding protein [Escherichia coli H120]
 gi|323948829|gb|EGB44726.1| DNA-binding protein [Escherichia coli H252]
 gi|323953788|gb|EGB49595.1| DNA-binding protein [Escherichia coli H263]
 gi|323958927|gb|EGB54602.1| DNA-binding protein [Escherichia coli H489]
 gi|323963781|gb|EGB59280.1| DNA-binding protein [Escherichia coli M863]
 gi|323969074|gb|EGB64382.1| DNA-binding protein [Escherichia coli TA007]
 gi|323974200|gb|EGB69332.1| DNA-binding protein [Escherichia coli TW10509]
 gi|324009499|gb|EGB78718.1| DNA-binding protein HU [Escherichia coli MS 57-2]
 gi|324015254|gb|EGB84473.1| DNA-binding protein HU [Escherichia coli MS 60-1]
 gi|324017347|gb|EGB86566.1| DNA-binding protein HU [Escherichia coli MS 117-3]
 gi|324110912|gb|EGC04904.1| DNA-binding protein [Escherichia fergusonii B253]
 gi|324115432|gb|EGC09377.1| DNA-binding protein [Escherichia coli E1167]
 gi|325499268|gb|EGC97127.1| transcriptional regulator HU subunit alpha [Escherichia
          fergusonii ECD227]
 gi|326347149|gb|EGD70879.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. 1125]
 gi|326347600|gb|EGD71322.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. 1044]
 gi|330908315|gb|EGH36834.1| DNA-binding protein HU-alpha [Escherichia coli AA86]
 gi|331036036|gb|EGI08273.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H736]
 gi|331041319|gb|EGI13471.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli M605]
 gi|331046625|gb|EGI18712.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli M718]
 gi|331052343|gb|EGI24381.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli
          TA206]
 gi|331057174|gb|EGI29166.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli
          TA143]
 gi|331061942|gb|EGI33866.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli
          TA271]
 gi|331067364|gb|EGI38770.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli
          TA280]
 gi|331072278|gb|EGI43612.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H591]
 gi|331077052|gb|EGI48268.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H299]
 gi|332083889|gb|EGI89102.1| DNA-binding protein HU-alpha [Shigella boydii 5216-82]
 gi|332085398|gb|EGI90568.1| DNA-binding protein HU-alpha [Shigella dysenteriae 155-74]
 gi|332092305|gb|EGI97380.1| DNA-binding protein HU-alpha [Shigella boydii 3594-74]
 gi|332105274|gb|EGJ08620.1| HU DNA-binding transcriptional regulator alpha subunit [Shigella
          sp. D9]
 gi|332345990|gb|AEE59324.1| DNA-binding protein HU-alpha [Escherichia coli UMNK88]
 gi|332749197|gb|EGJ79619.1| DNA-binding protein HU-alpha [Shigella flexneri 2747-71]
 gi|332751446|gb|EGJ81848.1| DNA-binding protein HU-alpha [Shigella flexneri 4343-70]
 gi|332762844|gb|EGJ93103.1| DNA-binding protein HU-&alpha [Shigella flexneri 2930-71]
 gi|332765544|gb|EGJ95758.1| DNA-binding protein HU-alpha [Shigella flexneri K-671]
 gi|332998960|gb|EGK18550.1| DNA-binding protein HU-alpha [Shigella flexneri K-218]
 gi|333010733|gb|EGK30161.1| DNA-binding protein HU-alpha [Shigella flexneri VA-6]
 gi|333014358|gb|EGK33711.1| DNA-binding protein HU-alpha [Shigella flexneri K-304]
          Length = 90

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+KI    V  F +   LK
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALK 86


>gi|330444951|ref|ZP_08308605.1| DNA-binding protein HU-&alpha [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
 gi|328493069|dbj|GAA03102.1| DNA-binding protein HU-&alpha [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
          Length = 90

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +  + I D+   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDLIAEKADLSKAQAKAALESTLDGITDALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT  E++I    V  F A   LK
Sbjct: 61 RNPQTGAEIQIAAANVPAFVAGKALK 86


>gi|206890650|ref|YP_002249614.1| DNA-binding protein HU 1 [Thermodesulfovibrio yellowstonii DSM
          11347]
 gi|206742588|gb|ACI21645.1| DNA-binding protein HU 1 [Thermodesulfovibrio yellowstonii DSM
          11347]
          Length = 90

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  I+ +  L++ ++ + +      + ++  +G+ + +  F +F+V ++ +R G
Sbjct: 1  MTKAELVSKIASKAELTKAEAAKALDATIEAVKEALKKGDKVTLVGFGSFYVSKRKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T QE+KI   +V  F A   LK+ +
Sbjct: 61 RNPRTGQEIKIPATKVPKFTAGKSLKEAV 89


>gi|85373566|ref|YP_457628.1| histone-like protein [Erythrobacter litoralis HTCC2594]
 gi|84786649|gb|ABC62831.1| histone-like protein [Erythrobacter litoralis HTCC2594]
          Length = 90

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++   GLS+ D++  V  +F+ I  +   G+ +++  F TF V ++ +  G
Sbjct: 1  MNKNDLISAVADASGLSKSDASGAVEGVFDSITKALSNGDEVRLVGFGTFSVARRKASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I       FKA   LK  +
Sbjct: 61 RNPRTGEPMTIKASNQPKFKAGKGLKDAV 89


>gi|310766093|gb|ADP11043.1| DNA-binding protein HU-alpha [Erwinia sp. Ejp617]
          Length = 90

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V Q+  R+G
Sbjct: 1  MNKTQLIDIIADKADLSKTQAKAALDSTLAAITESLKEGDAVQLVGFGTFKVNQRAGRIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  E++I    V  F +   LK+ +
Sbjct: 61 RNPKTGNEIQIAASTVPAFTSGKALKEAV 89


>gi|160942315|ref|ZP_02089624.1| hypothetical protein CLOBOL_07201 [Clostridium bolteae ATCC
          BAA-613]
 gi|158434872|gb|EDP12639.1| hypothetical protein CLOBOL_07201 [Clostridium bolteae ATCC
          BAA-613]
          Length = 92

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  LV  +S   GL+ K S + +  L + I      G  + +  F  F V  + +R+ 
Sbjct: 1  MNKRQLVDRMSSGSGLTMKQSEKALNGLMDVIHSELSSGGNVSLIGFGVFSVADRKARMA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E+++  R++ VFKA S LK+ +
Sbjct: 61 RNPKTGEEMEVKARKIPVFKAGSTLKRAV 89


>gi|329296189|ref|ZP_08253525.1| integration host factor subunit alpha [Plautia stali symbiont]
          Length = 77

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 42/74 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKELVEFFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDP 77
          GRN +T +  +  P
Sbjct: 62 GRNPKTGKIFQSPP 75


>gi|13476997|ref|NP_108567.1| DNA-binding protein HRm [Mesorhizobium loti MAFF303099]
 gi|260460894|ref|ZP_05809144.1| histone family protein DNA-binding protein [Mesorhizobium
          opportunistum WSM2075]
 gi|319784101|ref|YP_004143577.1| histone family protein DNA-binding protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
 gi|14027760|dbj|BAB54353.1| DNA-binding protein; HRm [Mesorhizobium loti MAFF303099]
 gi|259033471|gb|EEW34732.1| histone family protein DNA-binding protein [Mesorhizobium
          opportunistum WSM2075]
 gi|317169989|gb|ADV13527.1| histone family protein DNA-binding protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
          Length = 90

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++    +S+ D+   V  +F+ I     +G  +++  F  F V ++ +  G
Sbjct: 1  MNKNELVSAVADAASISKGDAQSAVDAVFSVITGELKKGGDVRLVGFGNFTVSKRAASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  EVKI  R V  F A   LK  +
Sbjct: 61 RNPQTGAEVKIPARTVPKFSAGKGLKDAV 89


>gi|53728750|ref|ZP_00135487.2| COG0776: Bacterial nucleoid DNA-binding protein [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
 gi|126208219|ref|YP_001053444.1| integration host factor subunit beta [Actinobacillus
          pleuropneumoniae L20]
 gi|165976155|ref|YP_001651748.1| integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 3 str. JL03]
 gi|190150051|ref|YP_001968576.1| integration host factor beta-subunit [Actinobacillus
          pleuropneumoniae serovar 7 str. AP76]
 gi|303251469|ref|ZP_07337645.1| integration host factor, beta subunit [Actinobacillus
          pleuropneumoniae serovar 6 str. Femo]
 gi|303252342|ref|ZP_07338508.1| integration host factor, beta subunit [Actinobacillus
          pleuropneumoniae serovar 2 str. 4226]
 gi|307245599|ref|ZP_07527685.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
 gi|307247719|ref|ZP_07529757.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 2 str. S1536]
 gi|307249952|ref|ZP_07531924.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 4 str. M62]
 gi|307252295|ref|ZP_07534192.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 6 str. Femo]
 gi|307254555|ref|ZP_07536389.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256762|ref|ZP_07538541.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 10 str. D13039]
 gi|307259009|ref|ZP_07540740.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 11 str. 56153]
 gi|307261205|ref|ZP_07542880.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 12 str. 1096]
 gi|307263384|ref|ZP_07545000.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 13 str. N273]
 gi|166918536|sp|A3N0A3|IHFB_ACTP2 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709766|sp|B3GXH5|IHFB_ACTP7 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709767|sp|B0BP19|IHFB_ACTPJ RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|126097011|gb|ABN73839.1| integration host factor beta-subunit [Actinobacillus
          pleuropneumoniae serovar 5b str. L20]
 gi|165876256|gb|ABY69304.1| integration host factor, beta subunit [Actinobacillus
          pleuropneumoniae serovar 3 str. JL03]
 gi|189915182|gb|ACE61434.1| integration host factor beta-subunit [Actinobacillus
          pleuropneumoniae serovar 7 str. AP76]
 gi|302648801|gb|EFL78991.1| integration host factor, beta subunit [Actinobacillus
          pleuropneumoniae serovar 2 str. 4226]
 gi|302649701|gb|EFL79881.1| integration host factor, beta subunit [Actinobacillus
          pleuropneumoniae serovar 6 str. Femo]
 gi|306853301|gb|EFM85520.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
 gi|306855749|gb|EFM87914.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 2 str. S1536]
 gi|306858012|gb|EFM90096.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 4 str. M62]
 gi|306860217|gb|EFM92233.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 6 str. Femo]
 gi|306862492|gb|EFM94452.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306864810|gb|EFM96714.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 10 str. D13039]
 gi|306867033|gb|EFM98890.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 11 str. 56153]
 gi|306868936|gb|EFN00738.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 12 str. 1096]
 gi|306871262|gb|EFN02990.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 13 str. N273]
          Length = 93

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+++ +S    L  K     V  +  +I     RGE +++  F +F +  +  RV
Sbjct: 1  MTKSELIENLVSLNPALQVKSVEDGVKEILEQIMLFLERGERVEVRGFGSFSLHYRQPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + VK+D + V  FKA   LK+R+
Sbjct: 61 GRNPKTGESVKLDAKYVPHFKAGKDLKERV 90


>gi|84503484|ref|ZP_01001539.1| DNA-binding protein HU, form N [Oceanicola batsensis HTCC2597]
 gi|84388162|gb|EAQ01115.1| DNA-binding protein HU, form N [Oceanicola batsensis HTCC2597]
          Length = 95

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +T++ LV +++ E G  +K +   +  L N I      G A+ I     F+ +++ 
Sbjct: 1  MAKPLTKTQLVAALADELGSDKKTAGAALDALANVITKEVSGGGAVAIPGVGKFYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
           R+ RN  TN+++K +  RVV    +  LK
Sbjct: 61 ERMVRNPATNEQIKKEADRVVKVTIAKALK 90


>gi|300309668|ref|YP_003773760.1| HU histone family DNA-binding protein [Herbaspirillum seropedicae
           SmR1]
 gi|300072453|gb|ADJ61852.1| HU histone family DNA-binding protein [Herbaspirillum seropedicae
           SmR1]
          Length = 115

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 48/89 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +S+LV  I+ +  +S+  + R + ++   I  +  +G+ +++  F +F   ++ +R G
Sbjct: 22  VNKSELVDVIAADTEISKAAAQRALDSVIENIIKAVTKGDTVQLVGFGSFSTGKRAARTG 81

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN QT +E+KI     V F A    K+ +
Sbjct: 82  RNPQTGEEIKIAAATTVKFSAGKAFKEAV 110


>gi|291544776|emb|CBL17885.1| bacterial nucleoid protein Hbs [Ruminococcus sp. 18P13]
          Length = 91

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DL+ +I+   G S+KD+ R +  + + I +    GE I +  F TF V+++  +  
Sbjct: 1  MTKADLIDAIAASAGSSKKDAERALQVVLSTITEKLAAGEKISLIGFGTFEVRERKEKTC 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N +T +++     +  VFKA   LK
Sbjct: 61 INPRTKEKLTAPACKAPVFKAGKALK 86


>gi|56475921|ref|YP_157510.1| integration host factor subunit beta [Aromatoleum aromaticum
          EbN1]
 gi|56311964|emb|CAI06609.1| integration host factor beta-subunit [Aromatoleum aromaticum
          EbN1]
          Length = 94

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  ++  F  L  KD+   V  + + + ++  RG+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIARLAARFPQLVAKDADYAVKMVIDAMSEALARGDRIEIRGFGSFALNYRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++  +V +  + V  FKA   L++R+
Sbjct: 61 GRNPKSGDKVLVPEKYVPHFKAGKELRERV 90


>gi|238650372|ref|YP_002916224.1| integration host factor alpha-subunit [Rickettsia peacockii str.
          Rustic]
 gi|238624470|gb|ACR47176.1| integration host factor alpha-subunit [Rickettsia peacockii str.
          Rustic]
          Length = 95

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT++ +   +S + G S       V T+F+ I + A + + + + +F +F VKQK  R 
Sbjct: 2  TITKAKIAAMLSSKLGFSNNLCEAIVHTVFSNILEIA-KAQKLTLKNFGSFEVKQKNPRP 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          G N  T   V I+ ++ + F  SS LK  I +  R
Sbjct: 61 GINFHTKAPVIIESKKHLRFVPSSKLKALINESTR 95


>gi|295678172|ref|YP_003606696.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1002]
 gi|295438015|gb|ADG17185.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1002]
          Length = 92

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++ + G S+  +   + TL   I  S  +GEA+++  F +F   ++ +R G
Sbjct: 1  MNKQELIDAVAGQTGASKAQTGETLDTLLEVIKKSVSKGEAVQLIGFGSFGSGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + +KI   + V F A    K
Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFK 86


>gi|152972862|ref|YP_001338008.1| transcriptional regulator HU subunit alpha [Klebsiella pneumoniae
          subsp. pneumoniae MGH 78578]
 gi|156935797|ref|YP_001439713.1| transcriptional regulator HU subunit alpha [Cronobacter sakazakii
          ATCC BAA-894]
 gi|206580695|ref|YP_002241059.1| DNA-binding protein HU, alpha subunit [Klebsiella pneumoniae 342]
 gi|238892475|ref|YP_002917209.1| transcriptional regulator HU subunit alpha [Klebsiella pneumoniae
          NTUH-K2044]
 gi|260596103|ref|YP_003208674.1| transcriptional regulator HU subunit alpha [Cronobacter
          turicensis z3032]
 gi|262043760|ref|ZP_06016863.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|288937704|ref|YP_003441763.1| histone family protein DNA-binding protein [Klebsiella variicola
          At-22]
 gi|290513212|ref|ZP_06552573.1| DNA-binding protein HU-alpha [Klebsiella sp. 1_1_55]
 gi|311281445|ref|YP_003943676.1| histone family protein DNA-binding protein [Enterobacter cloacae
          SCF1]
 gi|330005095|ref|ZP_08305105.1| DNA-binding protein HU-alpha [Klebsiella sp. MS 92-3]
 gi|150957711|gb|ABR79741.1| DNA-binding protein HU-alpha (HU-2) [Klebsiella pneumoniae subsp.
          pneumoniae MGH 78578]
 gi|156534051|gb|ABU78877.1| hypothetical protein ESA_03673 [Cronobacter sakazakii ATCC
          BAA-894]
 gi|206569753|gb|ACI11529.1| DNA-binding protein HU, alpha subunit [Klebsiella pneumoniae 342]
 gi|238544791|dbj|BAH61142.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
          pneumoniae NTUH-K2044]
 gi|259038884|gb|EEW40052.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|260215280|emb|CBA27205.1| DNA-binding protein HU-alpha [Cronobacter turicensis z3032]
 gi|288892413|gb|ADC60731.1| histone family protein DNA-binding protein [Klebsiella variicola
          At-22]
 gi|289774309|gb|EFD82316.1| DNA-binding protein HU-alpha [Klebsiella sp. 1_1_55]
 gi|308750640|gb|ADO50392.1| histone family protein DNA-binding protein [Enterobacter cloacae
          SCF1]
 gi|328536428|gb|EGF62781.1| DNA-binding protein HU-alpha [Klebsiella sp. MS 92-3]
          Length = 90

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKAQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89


>gi|148975855|ref|ZP_01812644.1| DNA-binding protein HU-beta [Vibrionales bacterium SWAT-3]
 gi|145964600|gb|EDK29853.1| DNA-binding protein HU-beta [Vibrionales bacterium SWAT-3]
          Length = 91

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 45/87 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S LV+ I+    +S++ +   +  L   I  +   G+ + I  F +F V  + +R G
Sbjct: 1  MNKSQLVEHIATSADISKEQAGNALNALVEGISTTLANGDEVAILGFGSFKVNTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T +E++I   +   FKA   LK+
Sbjct: 61 RNPRTGEEIQIAASKTPAFKAGKALKE 87


>gi|284988917|ref|YP_003407471.1| histone family protein DNA-binding protein [Geodermatophilus
          obscurus DSM 43160]
 gi|284062162|gb|ADB73100.1| histone family protein DNA-binding protein [Geodermatophilus
          obscurus DSM 43160]
          Length = 94

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 44/87 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+K   +        +T L +E+ D+  RGE + +S   T    Q+ +R G
Sbjct: 1  MNKAELVSAIAKRADVPTSTVDSVLTGLQDELVDAITRGEKVAVSGLLTVERTQRSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN QT + + I     V   A S LKK
Sbjct: 61 RNPQTGESIDIPAANTVKVTAGSNLKK 87


>gi|119510023|ref|ZP_01629164.1| Histone-like DNA-binding protein [Nodularia spumigena CCY9414]
 gi|119465347|gb|EAW46243.1| Histone-like DNA-binding protein [Nodularia spumigena CCY9414]
          Length = 100

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV ++S++  +++K +   +T     I ++   G+ + +  F +F  +++ +R G
Sbjct: 1  MNKGELVDAVSEKASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +TN++++I   RV  F A  + ++++
Sbjct: 61 RNPKTNEKMEIPATRVPAFSAGKLFREKV 89


>gi|238754238|ref|ZP_04615595.1| DNA-binding protein HU-beta [Yersinia ruckeri ATCC 29473]
 gi|238707485|gb|EEP99845.1| DNA-binding protein HU-beta [Yersinia ruckeri ATCC 29473]
          Length = 90

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + +S   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKAGDDVALVGFGTFAVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  F+A   LK  +
Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKGLKDAV 89


>gi|153835692|ref|ZP_01988359.1| DNA-binding protein HU-beta [Vibrio harveyi HY01]
 gi|269961042|ref|ZP_06175411.1| DNA-binding protein HU-beta [Vibrio harveyi 1DA3]
 gi|148867673|gb|EDL66949.1| DNA-binding protein HU-beta [Vibrio harveyi HY01]
 gi|269834261|gb|EEZ88351.1| DNA-binding protein HU-beta [Vibrio harveyi 1DA3]
          Length = 90

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I++   +S+  + R +      +  +   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVEQIAENADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E++I   +V  FKA   LK
Sbjct: 61 RNPKTGEEIQIAEAKVPSFKAGKALK 86


>gi|315126783|ref|YP_004068786.1| DNA-binding protein [Pseudoalteromonas sp. SM9913]
 gi|315015297|gb|ADT68635.1| DNA-binding protein [Pseudoalteromonas sp. SM9913]
          Length = 89

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++    L++K++   +T+L   I  S   G+ ++I  F TF +    +R G
Sbjct: 1  MNKAELVTAMAHTSELTKKEAQLALTSLQKVITKSLSEGDQVQIYGFGTFALSYYPARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + ++I+     VFK +  LK
Sbjct: 61 RNPQTGEAIEIEGANKAVFKPAKALK 86


>gi|319900802|ref|YP_004160530.1| bacterial nucleoid protein Hbs [Bacteroides helcogenes P 36-108]
 gi|319415833|gb|ADV42944.1| bacterial nucleoid protein Hbs [Bacteroides helcogenes P 36-108]
          Length = 88

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 48/85 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ E GL++ DS + +      +  +   GE + +  F TF V ++ +R+G
Sbjct: 1  MNKAELISAMAAEAGLTKADSKKALDAFVVSVTKAMKAGEKVSLVGFGTFAVAERSARMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N  T + ++I  ++VV FK  + L
Sbjct: 61 INPSTKKPIEIAAKKVVKFKPGAEL 85


>gi|167032913|ref|YP_001668144.1| histone family protein DNA-binding protein [Pseudomonas putida
          GB-1]
 gi|166859401|gb|ABY97808.1| histone family protein DNA-binding protein [Pseudomonas putida
          GB-1]
          Length = 90

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  +   +  +  +G+ + +  F TF VK +  R G
Sbjct: 1  MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTFSVKDRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + +KI+  +V  FKA   LK  +
Sbjct: 61 RNPQTGKAIKIEAAKVPGFKAGKGLKDAV 89


>gi|330446590|ref|ZP_08310242.1| putative bacterial nucleoid DNA-binding protein [Photobacterium
          leiognathi subsp. mandapamensis svers.1.1.]
 gi|328490781|dbj|GAA04739.1| putative bacterial nucleoid DNA-binding protein [Photobacterium
          leiognathi subsp. mandapamensis svers.1.1.]
          Length = 90

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV  I++   +S+  + R +      + ++   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKTQLVDKIAESADISKASAGRALDAFIEAVSETLKDGDQVALVGFGTFSVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I   +V  FK    LK  +
Sbjct: 61 RNPQTGAEIQIAAAKVPGFKPGKALKDSV 89


>gi|309781951|ref|ZP_07676682.1| DNA-binding protein HU-beta [Ralstonia sp. 5_7_47FAA]
 gi|308919295|gb|EFP64961.1| DNA-binding protein HU-beta [Ralstonia sp. 5_7_47FAA]
          Length = 90

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  ++ +  +S+  + R +  L + I D+   G ++ +  F TF V ++ SR G
Sbjct: 1  MNKTDLIDHVAAQTDMSKAAAGRAIDALIDGIKDALCDGGSVTLVGFGTFLVGKRSSRNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   + I+  +V  FK    LK
Sbjct: 61 RNPRTGAAITIEGGKVAKFKPGKALK 86


>gi|262276735|ref|ZP_06054528.1| integration host factor subunit beta (IHF-beta) [alpha
          proteobacterium HIMB114]
 gi|262223838|gb|EEY74297.1| integration host factor subunit beta (IHF-beta) [alpha
          proteobacterium HIMB114]
          Length = 103

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 3  KTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          KT  +SD+VK +   F  +   +    + ++F  + ++   G  I+I    TF VK+  +
Sbjct: 4  KTFVKSDIVKDLQGHFQKIPNNNVEHIIESIFKYLSNALSEGRNIEIRGLGTFKVKKMPA 63

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          R  RN +T + ++I+ +  V +K+S +L  RI  D
Sbjct: 64 RNARNPKTGETIQIEEKNKVKWKSSKLLNYRINKD 98


>gi|331005201|ref|ZP_08328595.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC1989]
 gi|330420983|gb|EGG95255.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC1989]
          Length = 91

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    L +  + R +  +   I  +   G+ + +  F TF VK + +R G
Sbjct: 1  MNKSELIDAIAASADLPKAAAGRALDAVLETIESTLKNGDPVTLVGFGTFSVKDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I   ++  FKA   LK  +
Sbjct: 61 RNPQTGAPIQIAAAKIPGFKAGKSLKDAV 89


>gi|328953767|ref|YP_004371101.1| histone family protein DNA-binding protein [Desulfobacca
          acetoxidans DSM 11109]
 gi|328454091|gb|AEB09920.1| histone family protein DNA-binding protein [Desulfobacca
          acetoxidans DSM 11109]
          Length = 95

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+++++K   L+ K +   V TLF  + ++ V+ E I+I  F +F VK      G
Sbjct: 1  MNKSQLIEALAKAENLTIKRAEMVVNTLFENMTNALVQDERIEIRGFGSFKVKCYEGYQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + +++  +++  FK    LK+R+
Sbjct: 61 RNPKTGEVIEVCDKKLPFFKVGKELKERV 89


>gi|226330391|ref|ZP_03805909.1| hypothetical protein PROPEN_04309 [Proteus penneri ATCC 35198]
 gi|225201186|gb|EEG83540.1| hypothetical protein PROPEN_04309 [Proteus penneri ATCC 35198]
          Length = 87

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 39/63 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ +++ ++ G+S++D+   V + F E+  S   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAENLFEKLGVSKRDAKDLVESFFEEVRRSLENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRN 66
          GRN
Sbjct: 62 GRN 64


>gi|224541850|ref|ZP_03682389.1| hypothetical protein CATMIT_01022 [Catenibacterium mitsuokai DSM
          15897]
 gi|224525200|gb|EEF94305.1| hypothetical protein CATMIT_01022 [Catenibacterium mitsuokai DSM
          15897]
          Length = 90

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  +S++  L++KD+   V T+F+ + +S + G+ + IS F TF +     R G
Sbjct: 1  MNKKELINIVSEKRDLTKKDAEILVNTVFDTMVESMIDGDKVLISGFGTFKINHCLERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           + +T + + I   R V FK S+ LK
Sbjct: 61 VSPKTKEPIIIPASRTVSFKPSNRLK 86


>gi|16126570|ref|NP_421134.1| DNA-binding protein HU [Caulobacter crescentus CB15]
 gi|221235352|ref|YP_002517789.1| DNA-binding protein HU [Caulobacter crescentus NA1000]
 gi|13423856|gb|AAK24302.1| DNA-binding protein HU [Caulobacter crescentus CB15]
 gi|220964525|gb|ACL95881.1| DNA-binding protein HU [Caulobacter crescentus NA1000]
          Length = 92

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 8  SDLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          SDLV  +++ +  L++  +   +  +F  I D+AV+GE + I  F  F V+ K +R GRN
Sbjct: 4  SDLVDAAVAADEKLTKTQAKAIIDGVFKSISDAAVKGEEVSIPGFGKFKVQAKPARTGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
            T   ++I   + V F  +  LK  +
Sbjct: 64 PATGATIEIAASKKVGFTPAKQLKDAV 90


>gi|47459316|ref|YP_016178.1| nucleoid DNA-binding protein HU [Mycoplasma mobile 163K]
 gi|47458646|gb|AAT27967.1| bacterial nucleoid DNA-binding protein HU [Mycoplasma mobile 163K]
          Length = 108

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 48/89 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           IT+ DL+ +I++    S+K+    V     EI    V  + I +SSF  F + ++ +R G
Sbjct: 18  ITKKDLIATIAENQNKSKKEVEEIVNAFLEEISSELVADKKINLSSFGIFEISERAARSG 77

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            N +T++ ++I   + V FK S  LK ++
Sbjct: 78  INPKTSEIIQIKATKSVKFKVSKSLKDQV 106


>gi|332532267|ref|ZP_08408148.1| DNA-binding protein HU-beta [Pseudoalteromonas haloplanktis
          ANT/505]
 gi|332038365|gb|EGI74810.1| DNA-binding protein HU-beta [Pseudoalteromonas haloplanktis
          ANT/505]
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R + +    +  +   G+++ +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDQIAADADISKAAAGRALDSFIESVSGALKDGDSVALVGFGTFSVRERAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I    +  FKA   LK  +
Sbjct: 61 RNPQTGETIQIAAATIPAFKAGKALKDAV 89


>gi|88803467|ref|ZP_01118993.1| DNA-binding protein HU-beta (NS1) (HU-1) [Polaribacter irgensii
          23-P]
 gi|88781033|gb|EAR12212.1| DNA-binding protein HU-beta (NS1) (HU-1) [Polaribacter irgensii
          23-P]
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 46/85 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+ +++ + G+S+  +   + +    I  S  + E + +  F TF V ++ +R G
Sbjct: 1  MNKSDLIDAMAADAGISKVAAKAALESFTTHITSSLQKKEKVALVGFGTFSVSERAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN QT   ++I  + V  FKA + L
Sbjct: 61 RNPQTGATIQISAKNVAKFKAGAGL 85


>gi|269103657|ref|ZP_06156354.1| DNA-binding protein HU-alpha [Photobacterium damselae subsp.
          damselae CIP 102761]
 gi|268163555|gb|EEZ42051.1| DNA-binding protein HU-alpha [Photobacterium damselae subsp.
          damselae CIP 102761]
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +    + I D+   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDLIAEKADLSKAQAKAALEATLDGITDALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I    V  F A   LK  +
Sbjct: 61 RNPQTGAEIQIAAANVPAFVAGKALKDSV 89


>gi|303248758|ref|ZP_07335010.1| histone family protein DNA-binding protein [Desulfovibrio
          fructosovorans JJ]
 gi|302489845|gb|EFL49774.1| histone family protein DNA-binding protein [Desulfovibrio
          fructosovorans JJ]
          Length = 91

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRK-DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + ++D++  I    G++ K ++ + +  +   I DS V GEA+ ++ F TF V ++ +R 
Sbjct: 1  MAKTDIIAKIQANAGIATKAEAGKVLDAVLAAIQDSLVAGEALTLTGFGTFKVSERAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GR+ +T   + I   + V F     LK  +
Sbjct: 61 GRDPRTGNAIDIPASKAVRFTPGKTLKDAV 90


>gi|37681329|ref|NP_935938.1| nucleoid DNA-binding protein [Vibrio vulnificus YJ016]
 gi|37200080|dbj|BAC95909.1| bacterial nucleoid DNA-binding protein [Vibrio vulnificus YJ016]
          Length = 101

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 46/89 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ L+  I+++  LS+  +   +    N + D+   G+ +++  F TF V  + +R G
Sbjct: 12  MNKTQLIDFIAEKADLSKAQAKAALEATLNGVTDALKEGDQVQLIGFGTFKVNHRAARTG 71

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T  E++I    V  F A   LK+ +
Sbjct: 72  RNPKTGDEIQIAAANVPAFVAGKALKESV 100


>gi|315500767|ref|YP_004089568.1| histone family protein DNA-binding protein [Asticcacaulis
          excentricus CB 48]
 gi|315418779|gb|ADU15417.1| histone family protein DNA-binding protein [Asticcacaulis
          excentricus CB 48]
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 38/65 (58%)

Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88
          V ++F  I ++AV G+ + + +F  F V+ K +R GRNL T   ++I   R +VFK    
Sbjct: 24 VDSVFASITEAAVLGQEVNLPAFGKFQVQAKPAREGRNLSTGATIQIAASRKLVFKPGKP 83

Query: 89 LKKRI 93
          +K R+
Sbjct: 84 VKDRL 88


>gi|152997229|ref|YP_001342064.1| integration host factor subunit beta [Marinomonas sp. MWYL1]
 gi|189045039|sp|A6W0A0|IHFB_MARMS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|150838153|gb|ABR72129.1| integration host factor, beta subunit [Marinomonas sp. MWYL1]
          Length = 102

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++  I ++  L  KD  + +  +   + DS   GE I+I  F +F +  +  R+
Sbjct: 1  MTKSELIELLIDQQSHLPVKDVEQAIKAMLEHMSDSLANGERIEIRGFGSFSLHYRAPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V++  + V  FK    L++ +
Sbjct: 61 GRNPKTGESVELSAKYVPHFKPGKELRELV 90


>gi|117620625|ref|YP_856545.1| DNA-binding protein HU-beta [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
 gi|145298874|ref|YP_001141715.1| nucleoid DNA-binding protein HU-beta [Aeromonas salmonicida
          subsp. salmonicida A449]
 gi|330829915|ref|YP_004392867.1| histone-like DNA-binding protein [Aeromonas veronii B565]
 gi|117562032|gb|ABK38980.1| DNA-binding protein HU-beta [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
 gi|142851646|gb|ABO89967.1| Bacterial nucleoid DNA-binding protein HU-beta [Aeromonas
          salmonicida subsp. salmonicida A449]
 gi|328805051|gb|AEB50250.1| histone-like DNA-binding protein [Aeromonas veronii B565]
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +    + + ++   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIADGADISKAAAGRALDAFIDAVGEALKEGDQVALVGFGTFAVRERAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I   +V  FKA   LK  +
Sbjct: 61 RNPQTGATIEIAAGKVPAFKAGKALKDAV 89


>gi|78357101|ref|YP_388550.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
 gi|78219506|gb|ABB38855.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV+ I+++  L++ ++ R +      + D  V+   + ++ F TF V+ +  R G
Sbjct: 1  MTKADLVEKIAEKANLTKANAERSLNAFLESVEDVLVKEGKLTLTGFGTFMVETRQERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   + I   +VV F+   +LK
Sbjct: 61 RNPRTGDPIVIPAAKVVKFRPGKLLK 86


>gi|319779317|ref|YP_004130230.1| Integration host factor beta subunit [Taylorella equigenitalis
          MCE9]
 gi|317109341|gb|ADU92087.1| Integration host factor beta subunit [Taylorella equigenitalis
          MCE9]
          Length = 109

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 55/95 (57%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ ++   +   + +D    V T+ + +  S  +G  I+I  F +F + Q+  RV
Sbjct: 1  MTKSELIDALVASYPQFATRDMDIAVKTILDAMTLSLAQGHRIEIRGFGSFSLSQRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T + V++  +RV  FKA   L++++ ++ +
Sbjct: 61 GRNPRTGEMVEVVGKRVPHFKAGKELREKVDEEFK 95


>gi|225023874|ref|ZP_03713066.1| hypothetical protein EIKCOROL_00740 [Eikenella corrodens ATCC
           23834]
 gi|224943348|gb|EEG24557.1| hypothetical protein EIKCOROL_00740 [Eikenella corrodens ATCC
           23834]
          Length = 146

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 48/86 (55%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +S+L+++I+KE  +S+  + + +      +  +  +G+ + +  F TF+V ++  R G
Sbjct: 58  VNKSELIEAIAKEADISKAAAGKALDGFTKAVTTALKKGDTVTLVGFGTFYVGERAERKG 117

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILK 90
           RN QT +E+ I   +   F+A   LK
Sbjct: 118 RNPQTGKELIIPAAKSPKFRAGKALK 143


>gi|167629351|ref|YP_001679850.1| DNA-binding protein hu [Heliobacterium modesticaldum Ice1]
 gi|167592091|gb|ABZ83839.1| DNA-binding protein hu [Heliobacterium modesticaldum Ice1]
          Length = 91

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++  L+ +D+ + V   F  + ++   G+ +++  F TF V+++ +R G
Sbjct: 1  MNKAELVSAVAEKAQLTEEDAKKAVNAFFAVVQEALKAGDTVQLLGFGTFKVRERTAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + + I   +   FKA   L+
Sbjct: 61 RNPQTGETIIIKASKTPTFKAGKSLR 86


>gi|160894582|ref|ZP_02075358.1| hypothetical protein CLOL250_02134 [Clostridium sp. L2-50]
 gi|156863893|gb|EDO57324.1| hypothetical protein CLOL250_02134 [Clostridium sp. L2-50]
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++  LS+KD+ + +    + + +   +GE +++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAMAEKTELSKKDAEKALKAFTDVVAEELKKGEKVQLVGFGTFEVAEREAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + + I   +   FKA   LK
Sbjct: 61 RNPRTGETMTIAASKSPKFKAGKALK 86


>gi|170728675|ref|YP_001762701.1| histone family protein DNA-binding protein [Shewanella woodyi
          ATCC 51908]
 gi|169814022|gb|ACA88606.1| histone family protein DNA-binding protein [Shewanella woodyi
          ATCC 51908]
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  +++   L++ ++ R + +    + ++   G+ I I  F +F    + +R G
Sbjct: 1  MNKTELVAKMAEHAELTKAEAARALKSFEETVTEAMKNGDKISIVGFGSFETSSRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I    V  FKA   LK
Sbjct: 61 RNPQTGKEIQIPAATVPKFKAGKTLK 86


>gi|300714862|ref|YP_003739665.1| Bacterial nucleoid protein HU alpha subunit [Erwinia billingiae
          Eb661]
 gi|299060698|emb|CAX57805.1| Bacterial nucleoid protein HU alpha subunit [Erwinia billingiae
          Eb661]
          Length = 91

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89


>gi|254294205|ref|YP_003060228.1| histone family protein DNA-binding protein [Hirschia baltica ATCC
          49814]
 gi|254042736|gb|ACT59531.1| histone family protein DNA-binding protein [Hirschia baltica ATCC
          49814]
          Length = 88

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L K +++   +++ ++ R V  + + I     +GE + ++ F TF  K +  R G
Sbjct: 1  MNKSELTKQVAEAASMTQSEAGRAVDAVLDTISSELKKGEQVALAGFGTFLAKTREERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN  T + + I  +    FK +S+LK
Sbjct: 61 RNPATGKPMTIPKKTSASFKPASVLK 86


>gi|188532334|ref|YP_001906131.1| transcriptional regulator HU subunit alpha [Erwinia tasmaniensis
          Et1/99]
 gi|292486747|ref|YP_003529617.1| DNA-binding protein HU-alpha [Erwinia amylovora CFBP1430]
 gi|188027376|emb|CAO95223.1| DNA-binding protein HU-alpha [Erwinia tasmaniensis Et1/99]
 gi|291552164|emb|CBA19201.1| DNA-binding protein HU-alpha [Erwinia amylovora CFBP1430]
 gi|312170813|emb|CBX79074.1| DNA-binding protein HU-alpha [Erwinia amylovora ATCC BAA-2158]
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89


>gi|304399314|ref|ZP_07381179.1| histone family protein DNA-binding protein [Pantoea sp. aB]
 gi|308188920|ref|YP_003933051.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea
          vagans C9-1]
 gi|304353170|gb|EFM17552.1| histone family protein DNA-binding protein [Pantoea sp. aB]
 gi|308059430|gb|ADO11602.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea
          vagans C9-1]
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIAEKADLSKTQAKAALESTLAAITESLKDGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89


>gi|224369016|ref|YP_002603180.1| hypothetical protein HRM2_19150 [Desulfobacterium autotrophicum
          HRM2]
 gi|223691733|gb|ACN15016.1| hypothetical protein HRM2_19150 [Desulfobacterium autotrophicum
          HRM2]
          Length = 76

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
          ++R+ +   V   F+ + D+   G+ ++I    +FHVK   S +GRN +T + V I  ++
Sbjct: 1  MTREGAAEVVEIFFDSLIDALANGDRVEIRGLCSFHVKDYKSYIGRNPKTGERVLIPGKK 60

Query: 80 VVVFKASSILKKRI 93
          +  FKA   LK+ +
Sbjct: 61 LPFFKAGKELKEGV 74


>gi|317494900|ref|ZP_07953310.1| DNA-binding protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917088|gb|EFV38437.1| DNA-binding protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIAEKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGMEIKIAAANVPAFVSGKALKDAV 89


>gi|262067818|ref|ZP_06027430.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693]
 gi|291378542|gb|EFE86060.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693]
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 46/82 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  +S++ G+ + ++ +F+ TL   I +   +GE   +    TF VK +  + G
Sbjct: 1  MLKKELLNVLSEKLGIKKIETEKFLDTLEEVITEELKKGEDFNLGKLGTFKVKDRAEKNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
           N +T +++ I  R+ V FKAS
Sbjct: 61 VNPKTGEKIVIPARKAVTFKAS 82


>gi|322514507|ref|ZP_08067544.1| integration host factor beta subunit [Actinobacillus ureae ATCC
          25976]
 gi|322119577|gb|EFX91655.1| integration host factor beta subunit [Actinobacillus ureae ATCC
          25976]
          Length = 93

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ + +S    L  K     V  L  +I  S  +GE +++  F +F +  +  R+
Sbjct: 1  MTKSELIDNLVSLNPTLQVKSVEDGVKELLEQIMLSLEQGERVEVRGFGSFSLHYRQPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + VK+D + V  FKA   LK+R+
Sbjct: 61 GRNPKTGESVKLDAKYVPHFKAGKDLKERV 90


>gi|125470062|gb|ABN42254.1| gp50 [Sodalis phage phiSG1]
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L++++S++  +S+  +   +  L   +  +   G+ + +  F TF VK +  R G
Sbjct: 1  MNKPELIRAVSEKADISQAKAGLVIDALTEAVTQTLAAGDVVSLVGFGTFEVKSRAERPG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I   RV  F+A   LK+ +
Sbjct: 61 RNPKTGEAMTIPAARVPAFRAGKGLKEAV 89


>gi|27364627|ref|NP_760155.1| DNA-binding protein HU-alpha [Vibrio vulnificus CMCP6]
 gi|320155021|ref|YP_004187400.1| DNA-binding protein HU-alpha [Vibrio vulnificus MO6-24/O]
 gi|27360772|gb|AAO09682.1| DNA-binding protein HU-alpha [Vibrio vulnificus CMCP6]
 gi|319930333|gb|ADV85197.1| DNA-binding protein HU-alpha [Vibrio vulnificus MO6-24/O]
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +    N + D+   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLNGVTDALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  E++I    V  F A   LK+ +
Sbjct: 61 RNPKTGDEIQIAAANVPAFVAGKALKESV 89


>gi|293400638|ref|ZP_06644783.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305664|gb|EFE46908.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 94

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 44/75 (58%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS+ + +  LV+ ++++  +++KD+T  V T+F EI  +   G  + +S F  F V ++ 
Sbjct: 1  MSEILNKKALVEVVAEKLEMTKKDATVAVDTVFEEITKTLADGGKVDLSGFGKFEVAERP 60

Query: 61 SRVGRNLQTNQEVKI 75
          +R+G N  T + + I
Sbjct: 61 ARMGINPATKEPLPI 75


>gi|149911448|ref|ZP_01900065.1| DNA-binding protein HU-alpha [Moritella sp. PE36]
 gi|149805479|gb|EDM65486.1| DNA-binding protein HU-alpha [Moritella sp. PE36]
          Length = 94

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+ +++ +  L++  +   +  + + I +S    EA+++  F TF V ++ +R+G
Sbjct: 1  MNKTQLIDAVAAKADLTKVQAKAALEEILSAITESLKEKEAVQLIGFGTFKVSERSARIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I    +  F A   LK
Sbjct: 61 RNPQTGEEIQISAATIPAFVAGKALK 86


>gi|257076532|ref|ZP_05570893.1| DNA-binding protein [Ferroplasma acidarmanus fer1]
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 44/83 (53%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          S+L K ++     ++K +   +T    E  +S   G  + ++ F  F  K++  RV RN 
Sbjct: 5  SELSKKVASTTNTTQKKTAEIITAFLKETVESVNAGNKVNLADFGIFERKEQKERVARNP 64

Query: 68 QTNQEVKIDPRRVVVFKASSILK 90
          +T +E+K+  +   VF+ASS +K
Sbjct: 65 KTREEIKVPAKDKFVFRASSAIK 87


>gi|71276514|ref|ZP_00652789.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
          Dixon]
 gi|71901996|ref|ZP_00684043.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
          Ann-1]
 gi|170729735|ref|YP_001775168.1| histone-like protein [Xylella fastidiosa M12]
 gi|71162691|gb|EAO12418.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
          Dixon]
 gi|71728241|gb|EAO30425.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
          Ann-1]
 gi|167964528|gb|ACA11538.1| histone-like protein [Xylella fastidiosa M12]
          Length = 94

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++    LS+ ++ R +  + NEI ++  +G+++ +  F TF V+ +  R G
Sbjct: 1  MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKKGDSVTLVGFGTFQVRPRAERPG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN ++ + + I       FK    LK  +
Sbjct: 61 RNPKSGEPIMIAASNNPSFKPGKALKDAV 89


>gi|86146200|ref|ZP_01064525.1| DNA-binding protein HU-beta [Vibrio sp. MED222]
 gi|218709724|ref|YP_002417345.1| DNA-binding protein HU-beta [Vibrio splendidus LGP32]
 gi|85835911|gb|EAQ54044.1| DNA-binding protein HU-beta [Vibrio sp. MED222]
 gi|218322743|emb|CAV18920.1| DNA-binding protein HU-beta [Vibrio splendidus LGP32]
          Length = 91

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 45/87 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S LV+ I+    +S++ +   +  L   I  +   G+ + I  F +F V  + +R G
Sbjct: 1  MNKSQLVEHIATSADISKEQAGTALNALVEGISTTLANGDDVSILGFGSFKVNSRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T +E++I   +   FKA   LK+
Sbjct: 61 RNPRTGEEIQISASKTPAFKAGKALKE 87


>gi|225010184|ref|ZP_03700656.1| histone family protein DNA-binding protein [Flavobacteria
          bacterium MS024-3C]
 gi|225005663|gb|EEG43613.1| histone family protein DNA-binding protein [Flavobacteria
          bacterium MS024-3C]
          Length = 96

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 43/85 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  IS++ G+ + D    V     E+  S   G+ + +  F +F +K +  + G
Sbjct: 1  MTKADIVTKISEKLGIEKGDIQATVEAFMEEVKTSLESGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  +KI    +  FK + + 
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVF 85


>gi|156973715|ref|YP_001444622.1| nucleoid DNA-binding protein [Vibrio harveyi ATCC BAA-1116]
 gi|156525309|gb|ABU70395.1| hypothetical protein VIBHAR_01420 [Vibrio harveyi ATCC BAA-1116]
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I++   +S+  + R +    + +  +   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVEQIAENADISKASAGRALDAFIDAVSGTLQSGDQVALVGFGTFSVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T  E++I   +V  FKA   LK
Sbjct: 61 RNPKTGDEIQIAEAKVPSFKAGKALK 86


>gi|77360983|ref|YP_340558.1| DNA-binding protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76875894|emb|CAI87115.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas
          haloplanktis TAC125]
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R + +    +  +   G+++ +  F TF V+ + +R G
Sbjct: 1  MNKSQLIDQIAADADISKAAAGRALDSFIESVTGALKEGDSVALVGFGTFSVRDRAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I    +  FKA   LK  +
Sbjct: 61 RNPQTGETIQIAAATIPAFKAGKALKDAV 89


>gi|304310684|ref|YP_003810282.1| Integration host factor beta subunit [gamma proteobacterium HdN1]
 gi|301796417|emb|CBL44625.1| Integration host factor beta subunit [gamma proteobacterium HdN1]
          Length = 99

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + SK+  LS+KD    + TL   +  +   G  I+I  F +F +  + +R 
Sbjct: 1  MTKSELIEKVASKQPQLSQKDVELAIKTLLEGMSQTLATGGRIEIRGFGSFSLHYRSART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  + V  FK    L++R+
Sbjct: 61 GRNPKTGESVDLTGKYVPHFKPGKELRERV 90


>gi|227115024|ref|ZP_03828680.1| transcriptional regulator HU subunit alpha [Pectobacterium
          carotovorum subsp. brasiliensis PBR1692]
 gi|227328381|ref|ZP_03832405.1| transcriptional regulator HU subunit alpha [Pectobacterium
          carotovorum subsp. carotovorum WPP14]
 gi|253686628|ref|YP_003015818.1| histone family protein DNA-binding protein [Pectobacterium
          carotovorum subsp. carotovorum PC1]
 gi|261819582|ref|YP_003257688.1| transcriptional regulator HU subunit alpha [Pectobacterium
          wasabiae WPP163]
 gi|251753206|gb|ACT11282.1| histone family protein DNA-binding protein [Pectobacterium
          carotovorum subsp. carotovorum PC1]
 gi|261603595|gb|ACX86081.1| histone family protein DNA-binding protein [Pectobacterium
          wasabiae WPP163]
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKAQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89


>gi|182419997|ref|ZP_02951231.1| DNA-binding protein HU 1 [Clostridium butyricum 5521]
 gi|237669484|ref|ZP_04529464.1| DNA-binding protein HU [Clostridium butyricum E4 str. BoNT E
          BL5262]
 gi|182376034|gb|EDT73621.1| DNA-binding protein HU 1 [Clostridium butyricum 5521]
 gi|237654928|gb|EEP52488.1| DNA-binding protein HU [Clostridium butyricum E4 str. BoNT E
          BL5262]
          Length = 91

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  L++KD+   + +    + ++   GE +++  F TF  +++ +R G
Sbjct: 1  MNKAELITSMAEKSKLTKKDAELALKSFIESVEEALENGEKVQLVGFGTFETRERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I    V VFKA    K ++
Sbjct: 61 RNPRTKEVINIPATTVPVFKAGKEFKDKV 89


>gi|33152542|ref|NP_873895.1| integration host factor, alpha chain [Haemophilus ducreyi
          35000HP]
 gi|71152153|sp|Q7VLG4|IHFA_HAEDU RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|33148766|gb|AAP96284.1| integration host factor, alpha chain [Haemophilus ducreyi
          35000HP]
          Length = 98

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 53/92 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ +   S+  ++G  +  + +FV   F EI  +   G+ +K+S F  F +++K +R 
Sbjct: 2  TLTKVEFTASLISKYGFDKSVAKQFVEQFFEEIRVALANGQEVKLSGFGNFSLRKKNARP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V +  RRVVVFK     ++R+ +
Sbjct: 62 GRNPKTGESVAVSARRVVVFKPGQKFRERVEN 93


>gi|325300201|ref|YP_004260118.1| histone family protein DNA-binding protein [Bacteroides
          salanitronis DSM 18170]
 gi|324319754|gb|ADY37645.1| histone family protein DNA-binding protein [Bacteroides
          salanitronis DSM 18170]
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LVK IS+  G         + +  +E+  S  RG+ + + SF TF +K +  +V 
Sbjct: 1  MTKAELVKEISQTTGTDSVTILSVIESFMSEVKSSLERGDEVTLRSFGTFCLKHRAEKVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RNL  N  + I    +  FK S+   KR+
Sbjct: 61 RNLSLNTSMVIPEHDIPSFKPSTEFLKRL 89


>gi|295690480|ref|YP_003594173.1| histone family protein DNA-binding protein [Caulobacter segnis
          ATCC 21756]
 gi|295432383|gb|ADG11555.1| histone family protein DNA-binding protein [Caulobacter segnis
          ATCC 21756]
          Length = 92

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 8  SDLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          SDLV  +++ +  L++  +   +  +F  I D+AV+G+ + I  F  F V+ K +R GRN
Sbjct: 4  SDLVDAAVAADDKLTKTQAKAIIDGVFKSISDAAVKGDEVSIPGFGKFKVQAKPARTGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
            T   ++I   + V F  +  LK  +
Sbjct: 64 PATGATIEIAASKKVAFTPAKQLKDAV 90


>gi|253701606|ref|YP_003022795.1| histone family protein DNA-binding protein [Geobacter sp. M21]
 gi|251776456|gb|ACT19037.1| histone family protein DNA-binding protein [Geobacter sp. M21]
          Length = 91

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++E  L++ D+ + +  + + + +    G+ + +  F TF V ++ +R G
Sbjct: 1  MNKAELVSAIAEEAQLTKVDAEKSLMGILDALTNCLAAGDKVTLVGFGTFSVAERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +N QT ++++I       FK  + LK  +
Sbjct: 61 QNPQTGKKIEIAASSAPKFKPGNTLKDLV 89


>gi|123440689|ref|YP_001004681.1| transcriptional regulator HU subunit alpha [Yersinia
          enterocolitica subsp. enterocolitica 8081]
 gi|332159925|ref|YP_004296502.1| transcriptional regulator HU subunit alpha [Yersinia
          enterocolitica subsp. palearctica 105.5R(r)]
 gi|122087650|emb|CAL10432.1| DNA-binding protein HU-alpha [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|318607524|emb|CBY29022.1| DNA-binding protein HU-alpha [Yersinia enterocolitica subsp.
          palearctica Y11]
 gi|325664155|gb|ADZ40799.1| transcriptional regulator HU subunit alpha [Yersinia
          enterocolitica subsp. palearctica 105.5R(r)]
 gi|330863075|emb|CBX73206.1| DNA-binding protein HU-alpha [Yersinia enterocolitica W22703]
          Length = 91

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKAQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89


>gi|331268343|ref|YP_004394835.1| histone family protein DNA-binding protein [Clostridium botulinum
          BKT015925]
 gi|329124893|gb|AEB74838.1| histone family protein DNA-binding protein [Clostridium botulinum
          BKT015925]
          Length = 92

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 50/87 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  L++KD+   +      + ++ + G+ +++  F TF  +++  R G
Sbjct: 1  MNKAELITSMAEKSQLTKKDAEVALKAFIESVEEALMDGDKVQLVGFGTFETRERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T +E+ I    V VFKA    K+
Sbjct: 61 RNPRTKEEITIPAATVPVFKAGKEFKE 87


>gi|317046455|ref|YP_004114103.1| histone family protein DNA-binding protein [Pantoea sp. At-9b]
 gi|316948072|gb|ADU67547.1| histone family protein DNA-binding protein [Pantoea sp. At-9b]
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIAEKADLSKTQAKTALESTLAAITESLKDGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89


>gi|255011460|ref|ZP_05283586.1| putative histone-like DNA-binding protein HU3 [Bacteroides
          fragilis 3_1_12]
 gi|313149278|ref|ZP_07811471.1| DNA-binding protein HU-beta [Bacteroides fragilis 3_1_12]
 gi|313138045|gb|EFR55405.1| DNA-binding protein HU-beta [Bacteroides fragilis 3_1_12]
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ E GLS+ DS + +   F+ +  +   G+ I +  F TF V ++  R G
Sbjct: 1  MNKAELINAMAAESGLSKVDSKKALEAFFSSVTKALSAGDKISLVGFGTFSVAERAERSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T + + I  ++V  FK  + L   I
Sbjct: 61 INPSTKKAIIIPAKKVAKFKPGAELADAI 89


>gi|187930619|ref|YP_001901106.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12J]
 gi|241664809|ref|YP_002983169.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12D]
 gi|309780383|ref|ZP_07675134.1| DNA-binding protein HU-beta [Ralstonia sp. 5_7_47FAA]
 gi|187727509|gb|ACD28674.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12J]
 gi|240866836|gb|ACS64497.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12D]
 gi|308921086|gb|EFP66732.1| DNA-binding protein HU-beta [Ralstonia sp. 5_7_47FAA]
          Length = 92

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++L+ +I+    GL++  + + +      I +S  +G+A+ +  F TF   ++  R+
Sbjct: 1  MTKTELIDAIASGVDGLTKAKAEQALNVTLQAIMESVGKGDAVSLIGFGTFSQGERAERM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T +E+K++  + V FKA    K  +
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAV 90


>gi|319404926|emb|CBI78526.1| integration host factor beta chain [Bartonella sp. AR 15-3]
          Length = 92

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S LV+ I++    L ++D+   V+ +F EI  +   G+ +++  F  F +K + +R 
Sbjct: 1  MVKSKLVQIIARHNPHLMQRDAENVVSAIFEEISAALANGQRVELRGFGAFSIKARSARN 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FK    L+ R+
Sbjct: 61 GRNPRTGEAVMVEEKWVPFFKTGKDLRDRL 90


>gi|293394036|ref|ZP_06638340.1| DNA-binding protein HU-beta [Serratia odorifera DSM 4582]
 gi|291423476|gb|EFE96701.1| DNA-binding protein HU-beta [Serratia odorifera DSM 4582]
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKAQAKLALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89


>gi|284050974|ref|ZP_06381184.1| nucleoid protein Hbs [Arthrospira platensis str. Paraca]
 gi|291567416|dbj|BAI89688.1| DNA-binding protein [Arthrospira platensis NIES-39]
          Length = 98

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 46/92 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  LV+  S + G+++K +   ++ +   I D+   GE + +  F +F  + + +R G
Sbjct: 1  MNKEQLVQETSIKAGVTKKQADAIISAICECIMDAVADGEKVTLVGFGSFEARHRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN  T Q + I    V  F A    K+R+ ++
Sbjct: 61 RNPSTGQPMTIPATTVPAFSAGKAFKERVANE 92


>gi|83749477|ref|ZP_00946468.1| DNA-binding protein HU [Ralstonia solanacearum UW551]
 gi|207722088|ref|YP_002252526.1| histone-like dna-binding protein hu-beta (ns1) [Ralstonia
          solanacearum MolK2]
 gi|207744856|ref|YP_002261248.1| histone-like dna-binding protein hu-beta (ns1) [Ralstonia
          solanacearum IPO1609]
 gi|300689790|ref|YP_003750785.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Ralstonia
          solanacearum PSI07]
 gi|300702469|ref|YP_003744069.1| DNA-binding protein hu-beta, ns1 (hu-1), plays a role in DNA
          replication and in rpo translation [Ralstonia
          solanacearum CFBP2957]
 gi|83723874|gb|EAP71061.1| DNA-binding protein HU [Ralstonia solanacearum UW551]
 gi|206587262|emb|CAQ17846.1| histone-like dna-binding protein hu-beta (ns1) [Ralstonia
          solanacearum MolK2]
 gi|206596266|emb|CAQ63193.1| histone-like dna-binding protein hu-beta (ns1) [Ralstonia
          solanacearum IPO1609]
 gi|299070130|emb|CBJ41420.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Ralstonia
          solanacearum CFBP2957]
 gi|299076850|emb|CBJ49462.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Ralstonia
          solanacearum PSI07]
          Length = 92

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++L+ +I+    GL++  + + +      I +S  +G+A+ +  F TF   ++  R+
Sbjct: 1  MTKTELIDAIASGVDGLTKAKAEQALNVTLQAIMESVGKGDAVSLIGFGTFSQGERAERM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T +E+K++  + V FKA    K  +
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAV 90


>gi|257451958|ref|ZP_05617257.1| histone-like DNA-binding protein [Fusobacterium sp. 3_1_5R]
 gi|257467237|ref|ZP_05631548.1| histone-like DNA-binding protein [Fusobacterium gonidiaformans
          ATCC 25563]
 gi|315918366|ref|ZP_07914606.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563]
 gi|317058507|ref|ZP_07922992.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
 gi|313684183|gb|EFS21018.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
 gi|313692241|gb|EFS29076.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563]
          Length = 93

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V +++K+  ++ K++ + V      + +S V G  +K   F ++  K++ +R  
Sbjct: 1  MTKKEFVAALAKKAEVTGKEADKMVKCFLELVEESLVAGNDVKFIGFGSWETKKREARKL 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI  +RVV FK    L  ++
Sbjct: 61 RNPQTGKEMKIAAKRVVKFKVGKALADKV 89


>gi|220904362|ref|YP_002479674.1| histone family protein DNA-binding protein [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868661|gb|ACL48996.1| histone family protein DNA-binding protein [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 90

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV+ I+ +  L++  + R +      + D+ V+   + ++ F TF V+ + +R G
Sbjct: 1  MTKADLVEKIAAKANLTKAAAERTLNAFLASVEDALVKESKLTLTGFGTFAVEHRKARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   + I   +++ F+   ILK
Sbjct: 61 RNPRTGDTLTIPACKIIKFRPGKILK 86


>gi|104781016|ref|YP_607514.1| DNA-binding protein HU-beta [Pseudomonas entomophila L48]
 gi|95110003|emb|CAK14708.1| DNA-binding protein HU-beta [Pseudomonas entomophila L48]
          Length = 90

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  +   +  +  +G+ + +  F TF VK++  R G
Sbjct: 1  MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTFSVKERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + +KI   +V  FKA   LK  +
Sbjct: 61 RNPQTGKAIKIAAAKVPGFKAGKGLKDAV 89


>gi|313673034|ref|YP_004051145.1| histone family protein DNA-binding protein [Calditerrivibrio
          nitroreducens DSM 19672]
 gi|312939790|gb|ADR18982.1| histone family protein DNA-binding protein [Calditerrivibrio
          nitroreducens DSM 19672]
          Length = 90

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL++ I+ + GL + ++ + +      + ++   G+ + +  F TF V ++ +R G
Sbjct: 1  MNKKDLIEKIATKAGLKKVEAEKALEAFEEAVVEALKSGDKVTLVGFGTFSVYERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+KI  ++   F    + K
Sbjct: 61 RNPQTGKEIKIPAKKAPKFTPGKLFK 86


>gi|197335248|ref|YP_002155560.1| DNA-binding protein HU-beta [Vibrio fischeri MJ11]
 gi|197316738|gb|ACH66185.1| DNA-binding protein HU-beta [Vibrio fischeri MJ11]
          Length = 90

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S LV  I++   +S+  + R +  L   + ++   G+ + +  F +F V+++ +R G
Sbjct: 1  MNKSQLVDQIAESADISKAAAGRALDALVETVTETLKSGDQVTLVGFGSFVVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + ++I   +V  FKA   LK
Sbjct: 61 RNPKTGEAIEISAAKVPAFKAGKALK 86


>gi|49474845|ref|YP_032886.1| integration host factor subunit beta [Bartonella henselae str.
          Houston-1]
 gi|49237650|emb|CAF26830.1| Integration host factor beta-subunit [Bartonella henselae str.
          Houston-1]
          Length = 92

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  +F EI  + V G  +++  F  F VK + +R 
Sbjct: 1  MVKSELVQIIARHNPHLFQRDVENIVNAIFEEISTALVNGNRVELRGFGAFSVKSRSARN 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + +  FK    L+ R+
Sbjct: 61 GRNPRTGEAVMVEEKWIPFFKTGKDLRDRL 90


>gi|197117663|ref|YP_002138090.1| histone-like protein [Geobacter bemidjiensis Bem]
 gi|197087023|gb|ACH38294.1| histone-like protein [Geobacter bemidjiensis Bem]
          Length = 91

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++E  L++ D+ + +  + + + +    G+ + +  F TF V ++ +R G
Sbjct: 1  MNKAELVSAIAEEAQLTKVDAEKSLMGILDALTNCLATGDKVTLVGFGTFSVAERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +N QT ++++I       FK  + LK  +
Sbjct: 61 QNPQTGKKIEIAASSAPKFKPGNTLKDLV 89


>gi|167621831|ref|YP_001676616.1| histone family protein DNA-binding protein [Caulobacter sp. K31]
 gi|167351572|gb|ABZ74302.1| histone family protein DNA-binding protein [Caulobacter sp. K31]
          Length = 92

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 8  SDLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          SDL+  +++ E  L++  +   +  +F  +  +AV+GE I I  F  F V+ K +R GRN
Sbjct: 4  SDLIDAAVAAEPKLTKAQAKAIIDGVFKSLTAAAVKGEEISIPGFGKFKVQAKPARTGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
            T   ++I   + V F  +  LK  +
Sbjct: 64 PATGGTIQIAASKKVAFTPAKQLKDAV 90


>gi|322834808|ref|YP_004214835.1| histone family protein DNA-binding protein [Rahnella sp. Y9602]
 gi|321170009|gb|ADW75708.1| histone family protein DNA-binding protein [Rahnella sp. Y9602]
          Length = 90

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +  + I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKAQAKVALESTLSAITESLKEGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89


>gi|86131320|ref|ZP_01049919.1| DNA-binding protein HU [Dokdonia donghaensis MED134]
 gi|332292027|ref|YP_004430636.1| histone family protein DNA-binding protein [Krokinobacter
          diaphorus 4H-3-7-5]
 gi|85818731|gb|EAQ39891.1| DNA-binding protein HU [Dokdonia donghaensis MED134]
 gi|332170113|gb|AEE19368.1| histone family protein DNA-binding protein [Krokinobacter
          diaphorus 4H-3-7-5]
          Length = 96

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 44/85 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  +S++ G+ + D    + +   E+  S   G+ + +  F +F +K +  + G
Sbjct: 1  MTKADIVAKVSEKLGIEKNDVQATIESFMEEVKTSLEGGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  +KI    +  FK + + 
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVF 85


>gi|89075365|ref|ZP_01161787.1| putative DNA-binding protein HU-alpha [Photobacterium sp. SKA34]
 gi|90581302|ref|ZP_01237099.1| putative DNA-binding protein HU-alpha [Vibrio angustum S14]
 gi|89048914|gb|EAR54483.1| putative DNA-binding protein HU-alpha [Photobacterium sp. SKA34]
 gi|90437541|gb|EAS62735.1| putative DNA-binding protein HU-alpha [Vibrio angustum S14]
          Length = 90

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +  + I D+   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDLIAEKADLSKAQAKAALESTLDGITDALKDGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT  E++I    V  F A   LK
Sbjct: 61 RNPQTGAEIQIAAANVPAFVAGKALK 86


>gi|121602248|ref|YP_989618.1| integration host factor subunit beta [Bartonella bacilliformis
          KC583]
 gi|120614425|gb|ABM45026.1| integration host factor, beta subunit [Bartonella bacilliformis
          KC583]
          Length = 92

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ I++    L ++D    V T+F EI  +  +G  I++  F  F VK + +R 
Sbjct: 1  MIKSELIQIIARRNPHLLQRDVENIVNTVFEEISIALAKGHRIELRGFGAFSVKNRSARN 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FK    L+ R+
Sbjct: 61 GRNPRTGETVMVEEKWVPSFKTGKELRDRL 90


>gi|320106540|ref|YP_004182130.1| histone family protein DNA-binding protein [Terriglobus saanensis
          SP1PR4]
 gi|319925061|gb|ADV82136.1| histone family protein DNA-binding protein [Terriglobus saanensis
          SP1PR4]
          Length = 89

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL++ I    GL R  +      +F+ +  +   G+ I++  F  F VK + + +G
Sbjct: 1  MIKQDLIQRIVDRSGLPRTKAEAATDVIFDTMKKAMASGDRIELRGFGVFTVKPRKTGIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T  EV I+P + V FK    L+
Sbjct: 61 RNPRTGAEVSIEPGKAVRFKPGKDLQ 86


>gi|86134967|ref|ZP_01053549.1| DNA-binding protein [Polaribacter sp. MED152]
 gi|85821830|gb|EAQ42977.1| DNA-binding protein [Polaribacter sp. MED152]
          Length = 96

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 42/82 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  IS + G+ + D    V     E+ D+   G+ + +  F +F +K +  + G
Sbjct: 1  MTKADIVSKISDKSGIEKTDVLATVEAFMTEVKDALENGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  +KI    +  FK +
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPA 82


>gi|302668567|ref|YP_003833015.1| DNA-binding protein [Butyrivibrio proteoclasticus B316]
 gi|302397531|gb|ADL36433.1| DNA-binding protein [Butyrivibrio proteoclasticus B316]
          Length = 94

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 4/97 (4%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++LV++I+K+ GL++  S + V    + +     +   +++  F TF   ++ +R G
Sbjct: 1   MNKTELVEAIAKQTGLTKAASEKAVKAFTDVVTKELKKKGKVQLVGFGTFETAKRAARTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           +N QT   +KI    V  FKA   LK    D + G K
Sbjct: 61  KNPQTGAAIKIPAATVPKFKAGKALK----DTVNGNK 93


>gi|160882775|ref|ZP_02063778.1| hypothetical protein BACOVA_00736 [Bacteroides ovatus ATCC 8483]
 gi|293373985|ref|ZP_06620326.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
 gi|299145603|ref|ZP_07038671.1| HimA protein [Bacteroides sp. 3_1_23]
 gi|156111799|gb|EDO13544.1| hypothetical protein BACOVA_00736 [Bacteroides ovatus ATCC 8483]
 gi|292631061|gb|EFF49698.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
 gi|298516094|gb|EFI39975.1| HimA protein [Bacteroides sp. 3_1_23]
          Length = 92

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 45/89 (50%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+   +    +++  G + KD++  + +L + +      G  I I  F +F VK+K  R+
Sbjct: 2  TMNNKEFTSELAERLGYTIKDTSELMNSLLSSMTQELEEGNVIAIQGFGSFEVKKKAERI 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
            N  + Q + + P+ V+ ++ S+ LK +
Sbjct: 62 SINPASKQRMLVPPKLVLSYRPSNTLKDK 90


>gi|323142051|ref|ZP_08076899.1| DNA-binding protein HU-alpha [Phascolarctobacterium sp. YIT 12067]
 gi|322413438|gb|EFY04309.1| DNA-binding protein HU-alpha [Phascolarctobacterium sp. YIT 12067]
          Length = 118

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 47/86 (54%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L+ +++++ GL++KD  + +T     + +   +G+ +++  F TF  + +  R G
Sbjct: 27  MNKTELIAAVAEKAGLTKKDVEKTITATLETVKEVVAKGDKVQVVGFGTFEARARKEREG 86

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILK 90
           +N Q  ++V I    +  FKA    K
Sbjct: 87  KNPQNGEKVVIPAATIPAFKAGKAFK 112


>gi|294668835|ref|ZP_06733928.1| DNA-binding protein HU-beta [Neisseria elongata subsp.
          glycolytica ATCC 29315]
 gi|291309352|gb|EFE50595.1| DNA-binding protein HU-beta [Neisseria elongata subsp.
          glycolytica ATCC 29315]
          Length = 89

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++++++E  +S+  + + +  + N I ++  +G+ + +  F +F+V ++  R G
Sbjct: 1  MNKSELIEAMAQEADISKAAAAKALDGMVNAITEALKKGDTVTLVGFGSFYVGERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + + I   +   F+A   LK
Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKSLK 86


>gi|163750455|ref|ZP_02157694.1| DNA-binding protein, HU family [Shewanella benthica KT99]
 gi|161329776|gb|EDQ00764.1| DNA-binding protein, HU family [Shewanella benthica KT99]
          Length = 91

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSRV 63
          + +++LV  +++   L++ ++ R + + F E   +A++ G+ I I  F +F    + +R+
Sbjct: 1  MNKTELVAKMAENADLTKTEAARALKS-FEETITAALKSGDKISIIGFGSFETTNRAARI 59

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN QT +E++I    V  FKA   LK
Sbjct: 60 GRNPQTGKEIQIPAATVPKFKAGKTLK 86


>gi|114330676|ref|YP_746898.1| histone family protein DNA-binding protein [Nitrosomonas eutropha
          C91]
 gi|114307690|gb|ABI58933.1| histone family protein DNA-binding protein [Nitrosomonas eutropha
          C91]
          Length = 90

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I++   +++ ++   +    + I D+  + +++ +  F TF V ++ +R G
Sbjct: 1  MNKSELIEAIARHADITKAEAGNALDGALSAIKDALSKNDSVTLVGFGTFKVGERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  E+KI   +V  F A   LK  +
Sbjct: 61 RNPRTGAEIKIKAAKVPKFTAGKALKDAV 89


>gi|260878351|ref|ZP_05890706.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AN-5034]
 gi|308092754|gb|EFO42449.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AN-5034]
          Length = 86

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 43/81 (53%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          LV+ I++   +S+  + R +      +  +   G+ + +  F TF V+ + +R GRN +T
Sbjct: 2  LVEQIAENADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTGRNPKT 61

Query: 70 NQEVKIDPRRVVVFKASSILK 90
           +E++I   +V  FKA   LK
Sbjct: 62 GEEIQIAEAKVPAFKAGKALK 82


>gi|16762287|ref|NP_457904.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. CT18]
 gi|16767424|ref|NP_463039.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhimurium str. LT2]
 gi|29143775|ref|NP_807117.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. Ty2]
 gi|56415996|ref|YP_153071.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62182621|ref|YP_219038.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|157147203|ref|YP_001454522.1| transcriptional regulator HU subunit alpha [Citrobacter koseri
          ATCC BAA-895]
 gi|161505342|ref|YP_001572454.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|161617309|ref|YP_001591274.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167553826|ref|ZP_02347570.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA29]
 gi|168234408|ref|ZP_02659466.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Kentucky str. CDC 191]
 gi|168239596|ref|ZP_02664654.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. SL480]
 gi|168245126|ref|ZP_02670058.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL486]
 gi|168264574|ref|ZP_02686547.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
 gi|168467898|ref|ZP_02701735.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Newport str. SL317]
 gi|168823116|ref|ZP_02835116.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Weltevreden str. HI_N05-537]
 gi|194445718|ref|YP_002043418.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Newport str. SL254]
 gi|194450276|ref|YP_002048155.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Heidelberg str. SL476]
 gi|194472167|ref|ZP_03078151.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Kentucky str. CVM29188]
 gi|194737577|ref|YP_002117071.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197249995|ref|YP_002149078.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Agona str. SL483]
 gi|197265623|ref|ZP_03165697.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA23]
 gi|197364923|ref|YP_002144560.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198243874|ref|YP_002218086.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Dublin str. CT_02021853]
 gi|200387831|ref|ZP_03214443.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Virchow str. SL491]
 gi|204931262|ref|ZP_03222022.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Javiana str. GA_MM04042433]
 gi|205354428|ref|YP_002228229.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Gallinarum str. 287/91]
 gi|207859348|ref|YP_002245999.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Enteritidis str. P125109]
 gi|213051532|ref|ZP_03344410.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. E00-7866]
 gi|213420368|ref|ZP_03353434.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. E01-6750]
 gi|213428479|ref|ZP_03361229.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. E02-1180]
 gi|213586806|ref|ZP_03368632.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. E98-0664]
 gi|213609700|ref|ZP_03369526.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. E98-2068]
 gi|213647192|ref|ZP_03377245.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. J185]
 gi|213855082|ref|ZP_03383322.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. M223]
 gi|224585710|ref|YP_002639509.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|237727864|ref|ZP_04558345.1| transcriptional regulator HU subunit alpha [Citrobacter sp. 30_2]
 gi|238913748|ref|ZP_04657585.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|283787327|ref|YP_003367192.1| DNA-binding protein HU-alpha [Citrobacter rodentium ICC168]
 gi|283836739|ref|ZP_06356480.1| DNA-binding protein HU-beta [Citrobacter youngae ATCC 29220]
 gi|289804949|ref|ZP_06535578.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. AG3]
 gi|289826727|ref|ZP_06545692.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. E98-3139]
 gi|60392169|sp|P0A1R6|DBHA_SALTY RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2;
          AltName: Full=NS2
 gi|60392170|sp|P0A1R7|DBHA_SALTI RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2;
          AltName: Full=NS2
 gi|25294362|pir||AH0931 histone like DNA-binding protein HU-alpha (NS2) (HU-2) [imported]
          - Salmonella enterica subsp. enterica serovar Typhi
          (strain CT18)
 gi|154139|gb|AAA27147.1| histone-like protein [Salmonella enterica subsp. enterica serovar
          Typhimurium]
 gi|6960343|gb|AAF33503.1| Salmonella typhimurium DNA-binding protein HU-2 (HUPA)
          (SW:P15148); contains similarity to Pfam domain PF00216
          (BAC_DBA_binding), Score=182.9, E=1.7e-51, N=1
          [Salmonella enterica subsp. enterica serovar
          Typhimurium str. LT2]
 gi|16422729|gb|AAL22998.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|16504591|emb|CAD09474.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2)
          [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29139410|gb|AAO70977.1| histone like DNA-binding protein HU-alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. Ty2]
 gi|56130253|gb|AAV79759.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2)
          [Salmonella enterica subsp. enterica serovar Paratyphi
          A str. ATCC 9150]
 gi|62130254|gb|AAX67957.1| DNA-binding protein HU-alpha (HU-2) [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. SC-B67]
 gi|157084408|gb|ABV14086.1| hypothetical protein CKO_02986 [Citrobacter koseri ATCC BAA-895]
 gi|160866689|gb|ABX23312.1| hypothetical protein SARI_03487 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
 gi|161366673|gb|ABX70441.1| hypothetical protein SPAB_05160 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|194404381|gb|ACF64603.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
 gi|194408580|gb|ACF68799.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL476]
 gi|194458531|gb|EDX47370.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Kentucky str. CVM29188]
 gi|194713079|gb|ACF92300.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|195629006|gb|EDX48398.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Newport str. SL317]
 gi|197096400|emb|CAR62005.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2)
          [Salmonella enterica subsp. enterica serovar Paratyphi
          A str. AKU_12601]
 gi|197213698|gb|ACH51095.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Agona str. SL483]
 gi|197243878|gb|EDY26498.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA23]
 gi|197287722|gb|EDY27113.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. SL480]
 gi|197938390|gb|ACH75723.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Dublin str. CT_02021853]
 gi|199604929|gb|EDZ03474.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Virchow str. SL491]
 gi|204319877|gb|EDZ05084.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Javiana str. GA_MM04042433]
 gi|205274209|emb|CAR39227.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2)
          [Salmonella enterica subsp. enterica serovar Gallinarum
          str. 287/91]
 gi|205321830|gb|EDZ09669.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA29]
 gi|205331654|gb|EDZ18418.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Kentucky str. CDC 191]
 gi|205336108|gb|EDZ22872.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL486]
 gi|205340578|gb|EDZ27342.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Weltevreden str. HI_N05-537]
 gi|205346968|gb|EDZ33599.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
 gi|206711151|emb|CAR35525.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2)
          [Salmonella enterica subsp. enterica serovar
          Enteritidis str. P125109]
 gi|224470238|gb|ACN48068.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2)
          [Salmonella enterica subsp. enterica serovar Paratyphi
          C strain RKS4594]
 gi|226910421|gb|EEH96339.1| transcriptional regulator HU subunit alpha [Citrobacter sp. 30_2]
 gi|261249274|emb|CBG27136.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2)
          [Salmonella enterica subsp. enterica serovar
          Typhimurium str. D23580]
 gi|267996471|gb|ACY91356.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhimurium str. 14028S]
 gi|282950781|emb|CBG90457.1| DNA-binding protein HU-alpha [Citrobacter rodentium ICC168]
 gi|291067290|gb|EFE05399.1| DNA-binding protein HU-beta [Citrobacter youngae ATCC 29220]
 gi|301160666|emb|CBW20197.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2)
          [Salmonella enterica subsp. enterica serovar
          Typhimurium str. SL1344]
 gi|312915276|dbj|BAJ39250.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhimurium str. T000240]
 gi|321223370|gb|EFX48437.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Typhimurium str. TN061786]
 gi|322616279|gb|EFY13189.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 315996572]
 gi|322617278|gb|EFY14180.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625950|gb|EFY22765.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 495297-3]
 gi|322626652|gb|EFY23454.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631487|gb|EFY28244.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635200|gb|EFY31918.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642595|gb|EFY39191.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 531954]
 gi|322646806|gb|EFY43310.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str.
          NC_MB110209-0054]
 gi|322650804|gb|EFY47197.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655896|gb|EFY52197.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str.
          CASC_09SCPH15965]
 gi|322657295|gb|EFY53574.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 19N]
 gi|322665557|gb|EFY61742.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669740|gb|EFY65885.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670981|gb|EFY67113.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 414877]
 gi|322679195|gb|EFY75248.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 366867]
 gi|322679353|gb|EFY75400.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 413180]
 gi|322688120|gb|EFY84084.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 446600]
 gi|322717118|gb|EFZ08689.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Choleraesuis str. A50]
 gi|323132506|gb|ADX19936.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhimurium str. 4/74]
 gi|323193388|gb|EFZ78598.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 609458-1]
 gi|323200692|gb|EFZ85765.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202181|gb|EFZ87237.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 609460]
 gi|323209292|gb|EFZ94227.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211617|gb|EFZ96454.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 556152]
 gi|323218045|gb|EGA02758.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323221334|gb|EGA05756.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225739|gb|EGA09960.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230973|gb|EGA15090.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323235755|gb|EGA19837.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240069|gb|EGA24115.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 2009085258]
 gi|323242598|gb|EGA26620.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 315731156]
 gi|323249694|gb|EGA33601.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323252577|gb|EGA36418.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256929|gb|EGA40641.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262048|gb|EGA45612.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323263946|gb|EGA47460.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323268441|gb|EGA51911.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326625879|gb|EGE32224.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Dublin str. 3246]
 gi|326629560|gb|EGE35903.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Gallinarum str. 9]
 gi|332990989|gb|AEF09972.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhimurium str. UK-1]
          Length = 90

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89


>gi|261855011|ref|YP_003262294.1| histone family protein DNA-binding protein [Halothiobacillus
          neapolitanus c2]
 gi|261835480|gb|ACX95247.1| histone family protein DNA-binding protein [Halothiobacillus
          neapolitanus c2]
          Length = 90

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++ + G+ + +S   +      + D+  +G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSELIDAMAAKSGMKKTESAAALDAFIEAVGDALKKGDQVTLVGFGTFLVREREARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN ++ + ++I   R+  FKA   LK  +
Sbjct: 61 RNPRSGETIEIAASRLPSFKAGKGLKDAV 89


>gi|126657689|ref|ZP_01728843.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110]
 gi|126620906|gb|EAZ91621.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110]
          Length = 93

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 49/93 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV  IS +  L++K+++  +  L + I ++   G+ + +  F TF  + +  R G
Sbjct: 1  MNKEELVNMISAKTRLTKKETSHILDALTDTIMETVADGDKVVLVGFGTFEPRDRKERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           N QT Q + I    V  F A  + K+++++ +
Sbjct: 61 MNPQTGQPITIPATTVPAFSAGKLFKEKVVESL 93


>gi|118579779|ref|YP_901029.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
 gi|118502489|gb|ABK98971.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
          Length = 92

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + +E   L+ K S   V T+F+ I D+   G+ ++I  F +F ++++  R 
Sbjct: 1  MTKSELIEKVVQEHAVLNMKVSEMLVNTVFDSIEDALRAGDKVEIRGFGSFTIRERTGRE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN ++ + V I  ++   FK    LK+R+
Sbjct: 61 ARNPKSGEVVSIPAKKTPFFKTGKDLKERV 90


>gi|117925411|ref|YP_866028.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
 gi|117609167|gb|ABK44622.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
          Length = 109

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          L++ I+++  LS    T  V  L + + D   R E + +  F  F VK+    +GR+ QT
Sbjct: 6  LIQQIARKRNLSIAQVTEIVQDLLDGVEDCLSRHEPVILPEFGQFAVKKVPPWLGRHPQT 65

Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93
           + +K+  + V  FK+ S L+KR+
Sbjct: 66 GEMMKLPGKNVPFFKSDSELRKRL 89


>gi|157828936|ref|YP_001495178.1| integration host factor alpha-subunit [Rickettsia rickettsii str.
          'Sheila Smith']
 gi|165933660|ref|YP_001650449.1| integration host factor subunit alpha [Rickettsia rickettsii str.
          Iowa]
 gi|75487853|sp|Q9AKF3|HLP_RICRI RecName: Full=Histone-like DNA-binding protein
 gi|13235508|emb|CAC33712.1| Integration host factor alpha-subunit [Rickettsia rickettsii]
 gi|157801417|gb|ABV76670.1| integration host factor alpha-subunit [Rickettsia rickettsii str.
          'Sheila Smith']
 gi|165908747|gb|ABY73043.1| integration host factor alpha-subunit [Rickettsia rickettsii str.
          Iowa]
          Length = 95

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT++ +   +S + G S       V T+F+ I + A + + + + +F +F VKQK  R 
Sbjct: 2  TITKAKIAAMLSSKLGFSNHLCEEIVHTVFSNILEIA-KAQKLTLKNFGSFEVKQKNPRP 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          G N  T   V I+ ++ + F  SS LK  I +  R
Sbjct: 61 GINFHTKALVIIESKKHLRFVPSSKLKALINESTR 95


>gi|152967315|ref|YP_001363099.1| histone family protein DNA-binding protein [Kineococcus
          radiotolerans SRS30216]
 gi|151361832|gb|ABS04835.1| histone family protein DNA-binding protein [Kineococcus
          radiotolerans SRS30216]
          Length = 92

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + RS+LV ++++  GL++ D+   +  L + + ++  +GEA+K+    T    ++ +R G
Sbjct: 1  MNRSELVTAVAQRAGLTQTDTDAVINALGDVLVEAVAKGEAVKLPGLMTVERVERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + ++I         A S LK
Sbjct: 61 RNPRTGETMEIAASYGAKLTAGSKLK 86


>gi|319936472|ref|ZP_08010888.1| DNA-binding protein HU [Coprobacillus sp. 29_1]
 gi|319808587|gb|EFW05139.1| DNA-binding protein HU [Coprobacillus sp. 29_1]
          Length = 90

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  +S++  L++KD+   V T+F+ + +S + G+ + IS F TF V  +  R G
Sbjct: 1  MNKKELIDIVSQKKDLTKKDAEALVDTVFDTMIESILEGDKVLISGFGTFKVNSRKERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           + +T + + I   + V FK S+ LK
Sbjct: 61 VSPKTKEMMIIPASKTVSFKPSNRLK 86


>gi|50119198|ref|YP_048365.1| transcriptional regulator HU subunit alpha [Pectobacterium
          atrosepticum SCRI1043]
 gi|49609724|emb|CAG73158.1| DNA-binding protein HU-alpha [Pectobacterium atrosepticum
          SCRI1043]
          Length = 90

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89


>gi|114706456|ref|ZP_01439358.1| integration host factor beta subunit [Fulvimarina pelagi
          HTCC2506]
 gi|114538317|gb|EAU41439.1| integration host factor beta subunit [Fulvimarina pelagi
          HTCC2506]
          Length = 93

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I+ +   L ++D    V  +F+EI ++      +++  F  F VK +  R 
Sbjct: 1  MIKSELVQVIANRNPHLYQRDVEMIVNAIFDEITEALCESNRVELRGFGAFSVKNRPPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V++  + V  FK    L++R+
Sbjct: 61 GRNPRTGEAVEVSEKWVPFFKPGKELRERL 90


>gi|71278799|ref|YP_269056.1| integration host factor subunit beta [Colwellia psychrerythraea
          34H]
 gi|123761027|sp|Q482G2|IHFB_COLP3 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|71144539|gb|AAZ25012.1| integration host factor, beta subunit [Colwellia psychrerythraea
          34H]
          Length = 95

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ +   LS K+  + +  +   +  S  +GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIEKLADKLSHLSAKEVEKSIKEILELMAQSLSKGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V++  + V  FK    L++R+
Sbjct: 61 GRNPKTGESVELSGKYVPHFKPGKELRERV 90


>gi|222084668|ref|YP_002543197.1| integration host factor, beta subunit [Agrobacterium radiobacter
          K84]
 gi|254803525|sp|B9J885|IHFB_AGRRK RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|221722116|gb|ACM25272.1| integration host factor, beta subunit [Agrobacterium radiobacter
          K84]
          Length = 102

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ ++ +   L  +D    V  + +EI D+   G  +++  F  F VK + SR 
Sbjct: 1  MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V ++ + V  FK    L++R+
Sbjct: 61 GRNPRTGDTVFVEEKWVPFFKTGKELRERL 90


>gi|309787032|ref|ZP_07681644.1| DNA-binding protein HU-beta [Shigella dysenteriae 1617]
 gi|308924610|gb|EFP70105.1| DNA-binding protein HU-beta [Shigella dysenteriae 1617]
 gi|332760731|gb|EGJ91019.1| DNA-binding protein HU-beta [Shigella flexneri 4343-70]
 gi|332768362|gb|EGJ98546.1| DNA-binding protein HU-&beta, NS1 [Shigella flexneri 2930-71]
          Length = 85

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 44/84 (52%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          ++  I+    +S+  + R +  +   + +S   G+ + +  F TF VK++ +R GRN QT
Sbjct: 1  MIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQT 60

Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93
           +E+ I   +V  F+A   LK  +
Sbjct: 61 GKEITIAAAKVPSFRAGKALKDAV 84


>gi|319786988|ref|YP_004146463.1| integration host factor subunit beta [Pseudoxanthomonas
          suwonensis 11-1]
 gi|317465500|gb|ADV27232.1| integration host factor, beta subunit [Pseudoxanthomonas
          suwonensis 11-1]
          Length = 103

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ +++ +  L  +D    V +L   +  S   GE I+I  F +F +  +  R+
Sbjct: 1  MTKSELIEILARRQSHLKAEDVDLAVKSLLEMMAGSLASGERIEIRGFGSFSLHYRPPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V +  + V  FKA   L++++ D
Sbjct: 61 GRNPKTGESVALPGKHVPHFKAGKELREKVSD 92


>gi|253681243|ref|ZP_04862041.1| DNA-binding protein HU [Clostridium botulinum D str. 1873]
 gi|253562481|gb|EES91932.1| DNA-binding protein HU [Clostridium botulinum D str. 1873]
          Length = 92

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 50/87 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  L++KD+   +      + ++ + G+ +++  F TF  +++  R G
Sbjct: 1  MNKAELITSMAEKSQLTKKDAEVALRAFIESVEEALMDGDKVQLVGFGTFETRERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T +E+ I    V VFKA    K+
Sbjct: 61 RNPRTKEEITIPAATVPVFKAGKEFKE 87


>gi|260061540|ref|YP_003194620.1| DNA-binding protein HU [Robiginitalea biformata HTCC2501]
 gi|88785672|gb|EAR16841.1| DNA-binding protein HU [Robiginitalea biformata HTCC2501]
          Length = 96

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 42/85 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  IS+E G+ + D    V      +  S   G+ + +  F +F +K +  + G
Sbjct: 1  MTKADIVSIISEELGMEKGDVQATVEKFMEAVKSSLENGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  +KI    +  FK + + 
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVF 85


>gi|15893011|ref|NP_360725.1| integration host factor alpha-subunit [Rickettsia conorii str.
          Malish 7]
 gi|34581296|ref|ZP_00142776.1| integration host factor alpha-subunit [Rickettsia sibirica 246]
 gi|229587067|ref|YP_002845568.1| Integration host factor alpha-subunit [Rickettsia africae ESF-5]
 gi|81527945|sp|Q92GN5|HLP_RICCN RecName: Full=Histone-like DNA-binding protein
 gi|15620211|gb|AAL03626.1| integration host factor alpha-subunit [Rickettsia conorii str.
          Malish 7]
 gi|28262681|gb|EAA26185.1| integration host factor alpha-subunit [Rickettsia sibirica 246]
 gi|228022117|gb|ACP53825.1| Integration host factor alpha-subunit [Rickettsia africae ESF-5]
          Length = 95

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT++ +   +S + G S       V T+F+ I + A + + + + +F +F VKQK  R 
Sbjct: 2  TITKAKIAAMLSSKLGFSNNLCEEIVHTVFSNILEIA-KEQKLTLKNFGSFEVKQKNPRP 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          G N  T   V I+ ++ + F  SS LK  I +  R
Sbjct: 61 GINFHTKAPVIIESKKHLRFVPSSKLKALINESTR 95


>gi|254455329|ref|ZP_05068758.1| bacterial DNA-binding protein [Candidatus Pelagibacter sp.
          HTCC7211]
 gi|207082331|gb|EDZ59757.1| bacterial DNA-binding protein [Candidatus Pelagibacter sp.
          HTCC7211]
          Length = 99

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 47/86 (54%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M   +T+ DLV  +  + G S++ S   +    + I  +    + +K+S F TF ++QK 
Sbjct: 1  MRINLTKKDLVNLVYMQLGFSKQISENLIEDFLSTIIKNIKLEKKLKLSKFGTFSIRQKK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86
          SR+GRN +T +   I  R VV+FK S
Sbjct: 61 SRIGRNPKTKESKIISSRDVVLFKPS 86


>gi|85859156|ref|YP_461358.1| DNA-binding protein HU [Syntrophus aciditrophicus SB]
 gi|85722247|gb|ABC77190.1| DNA-binding protein HU [Syntrophus aciditrophicus SB]
          Length = 90

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L+  I++E G+++  +++ + +  N +     +   + +  F TF V  + +R G
Sbjct: 1  MTKAELISVIAEEAGITKASASKALESYVNTVAKELNKTGKLGLVGFGTFSVVMREAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   +KI  ++VV FK    L ++I
Sbjct: 61 RNPQTGDIIKIPAKKVVKFKPGKELSEKI 89


>gi|317487172|ref|ZP_07945973.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
 gi|316921573|gb|EFV42858.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
          Length = 109

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 45/91 (49%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+   T+ DLV+ I+K   +S  ++ R +  +   +    +   ++ +    T  V +  
Sbjct: 1  MASKSTKKDLVQHIAKALEVSPVEAERVMLVVMRYVRRQLLEDTSVILPGIGTLAVTETA 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          +R+GRN  T Q V I PR+ +  K S  LK+
Sbjct: 61 ARLGRNPHTGQPVPIPPRKTIKLKVSKDLKE 91


>gi|157368539|ref|YP_001476528.1| transcriptional regulator HU subunit alpha [Serratia
          proteamaculans 568]
 gi|157320303|gb|ABV39400.1| histone family protein DNA-binding protein [Serratia
          proteamaculans 568]
          Length = 90

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKAQAKLALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89


>gi|119896606|ref|YP_931819.1| DNA-binding protein HU [Azoarcus sp. BH72]
 gi|119669019|emb|CAL92932.1| DNA-binding protein HU (DNA-binding protein II) [Azoarcus sp.
          BH72]
          Length = 91

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + + V++++    +SR  + R ++ + + I +   +GE +  + F +F V ++ +R G
Sbjct: 1  MNKGEFVEALADRLDVSRAQADRALSAVLDIISEQLGKGEKVAFTGFGSFEVSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   + I    V  F A + LK  +
Sbjct: 61 RNPQTGATIDIAASSVPKFTAGATLKAAV 89


>gi|292490562|ref|YP_003526001.1| histone family protein DNA-binding protein [Nitrosococcus
          halophilus Nc4]
 gi|291579157|gb|ADE13614.1| histone family protein DNA-binding protein [Nitrosococcus
          halophilus Nc4]
          Length = 94

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 47/94 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  ++ E  LS+ D+ R V  L   I  +      + +  F +F V+++ +R G
Sbjct: 1  MNKTELVNFVASEANLSQADAQRAVNALLQTIEQTLGEKGMVSLVGFGSFSVQKRSARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          R+ QT + + I    V VFK    LK+ +    R
Sbjct: 61 RHPQTGETITIPATNVPVFKPGKALKEAVQQRKR 94


>gi|171909880|ref|ZP_02925350.1| putative integration host factor alpha-subunit [Verrucomicrobium
          spinosum DSM 4136]
          Length = 104

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ DLV  +S   GL++  +        + I +   +G  + +  F TF V+    ++
Sbjct: 3  TVTKRDLVVELSNRTGLTQSQAFDLFQQALDLITEELAKGNEVTLRRFGTFEVRVTKPKI 62

Query: 64 GRNL-QTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN  +   E++I PR VV FK    +K ++
Sbjct: 63 GRNPNKPGSEMQIPPRTVVRFKPGKEMKAQV 93


>gi|119946824|ref|YP_944504.1| DNA-binding protein HU alpha subunit [Psychromonas ingrahamii 37]
 gi|119865428|gb|ABM04905.1| DNA-binding protein HU alpha subunit [Psychromonas ingrahamii 37]
          Length = 91

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  L++  +   +  +   + DS   GE +++  F TF V  + +R G
Sbjct: 1  MNKTQLITDIAEKAELTKVQAKAALEQMMTSVTDSLKDGEPVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  +++I    V  F A   LK+ +
Sbjct: 61 RNPQTGADIQIKAANVPAFVAGKSLKEAV 89


>gi|146282421|ref|YP_001172574.1| DNA-binding protein HU [Pseudomonas stutzeri A1501]
 gi|145570626|gb|ABP79732.1| DNA-binding protein HU [Pseudomonas stutzeri A1501]
 gi|327480676|gb|AEA83986.1| DNA-binding protein HU [Pseudomonas stutzeri DSM 4166]
          Length = 90

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  +   +  +   G+++ +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I   ++  FKA   LK  +
Sbjct: 61 RNPQTGKPINIAAAKIPGFKAGKALKDAV 89


>gi|298368578|ref|ZP_06979896.1| integration host factor, beta subunit [Neisseria sp. oral taxon
          014 str. F0314]
 gi|298282581|gb|EFI24068.1| integration host factor, beta subunit [Neisseria sp. oral taxon
          014 str. F0314]
          Length = 104

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 6/95 (6%)

Query: 5  ITRSDLVKSISKEFG------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          +T+S+L+  +++ F       L  KD    V  L + +  S  RG+ I+I  F +F +  
Sbjct: 1  MTKSELMVRLAEVFAEKNGTHLMAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          + +R+GRN +T + V++  + V  FK    L++R+
Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERV 95


>gi|238918150|ref|YP_002931664.1| transcriptional regulator HU subunit alpha [Edwardsiella ictaluri
          93-146]
 gi|238867718|gb|ACR67429.1| DNA-binding protein HU-beta [Edwardsiella ictaluri 93-146]
          Length = 90

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKAQAKAALESTLAAITESLKAGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89


>gi|226197835|ref|ZP_03793409.1| integration host factor, beta subunit [Burkholderia pseudomallei
          Pakistan 9]
 gi|254295622|ref|ZP_04963080.1| integration host factor, beta subunit [Burkholderia pseudomallei
          406e]
 gi|157805552|gb|EDO82722.1| integration host factor, beta subunit [Burkholderia pseudomallei
          406e]
 gi|225930023|gb|EEH26036.1| integration host factor, beta subunit [Burkholderia pseudomallei
          Pakistan 9]
          Length = 90

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 43/71 (60%)

Query: 23 KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVV 82
          KD+   V T+ + + D+  +G  I+I  F +F + ++ +RVGRN ++ ++V++  + V  
Sbjct: 3  KDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARVGRNPKSGEKVQVPEKHVPH 62

Query: 83 FKASSILKKRI 93
          FK    L++R+
Sbjct: 63 FKPGKELRERV 73


>gi|46580205|ref|YP_011013.1| DNA-binding protein HU [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|120602409|ref|YP_966809.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris DP4]
 gi|46449622|gb|AAS96272.1| DNA-binding protein HU [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|120562638|gb|ABM28382.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris DP4]
 gi|311233808|gb|ADP86662.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris RCH1]
          Length = 90

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  I+ +  L++  + R +    + + D       + ++ F TF V+ +  R G
Sbjct: 1  MTKADLVDKIAAKANLTKASAERSLNAFLDAVKDVLASEGKLTLTGFGTFAVESRQERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T  E+KI   +VV F+    LK
Sbjct: 61 RNPRTGAEIKIPASKVVKFRPGKTLK 86


>gi|115524524|ref|YP_781435.1| histone family protein DNA-binding protein [Rhodopseudomonas
           palustris BisA53]
 gi|115518471|gb|ABJ06455.1| histone family protein DNA-binding protein [Rhodopseudomonas
           palustris BisA53]
          Length = 103

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           IT   L  +++++  +S+K S   ++ L   I     +GE I+I       V+++ +R G
Sbjct: 15  ITLKHLAAALAEDHEMSKKKSEEILSDLVGAITKHLKKGERIRIVGLGILQVRKRAARTG 74

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN  T + ++I   + V F+A+  LK+ +
Sbjct: 75  RNPATGEPIQIKASKKVAFRAAKELKEAV 103


>gi|51244752|ref|YP_064636.1| DNA-binding protein HU [Desulfotalea psychrophila LSv54]
 gi|50875789|emb|CAG35629.1| probable DNA-binding protein HU [Desulfotalea psychrophila LSv54]
          Length = 97

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 50/95 (52%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K + + D++ S+S+E  + ++D +     +   I ++  R   +++  F +F V+ +  R
Sbjct: 2  KRMLKKDIIDSVSEELSMQKQDVSVAADVILETISNALARDRRVELRGFGSFSVRSRKPR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
            +N +T Q + I  RR + F  S  LK+ ++ DM
Sbjct: 62 TTKNPRTGQVMDIPERRTLHFTMSKSLKESLISDM 96


>gi|298373014|ref|ZP_06983004.1| DNA-binding protein HU-beta [Bacteroidetes oral taxon 274 str.
          F0058]
 gi|298275918|gb|EFI17469.1| DNA-binding protein HU-beta [Bacteroidetes oral taxon 274 str.
          F0058]
          Length = 91

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 42/71 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLVK+I+ E GLS+ DS + +    N +  S V+GE++ +  F TF V ++ +R G
Sbjct: 1  MNKQDLVKAIATEAGLSQVDSKKALEAFENAVKKSLVKGESVTMIGFGTFSVVKRAARKG 60

Query: 65 RNLQTNQEVKI 75
           N    + ++I
Sbjct: 61 INPANGKPLQI 71


>gi|317154852|ref|YP_004122900.1| histone family protein DNA-binding protein [Desulfovibrio
          aespoeensis Aspo-2]
 gi|316945103|gb|ADU64154.1| histone family protein DNA-binding protein [Desulfovibrio
          aespoeensis Aspo-2]
          Length = 95

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 45/83 (54%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++ +V  I +    +R +    V T+   +  S  +  A+ +S F  F    K +R 
Sbjct: 3  TLTKAGIVDYIYERTESNRAEIKDLVETILEIMKTSIKKDHALLVSGFGKFEAYDKRARK 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKAS 86
          GRN QT+Q + + PR+VVVF+ S
Sbjct: 63 GRNPQTSQTITLPPRKVVVFRLS 85


>gi|218780729|ref|YP_002432047.1| histone family protein DNA-binding protein [Desulfatibacillum
          alkenivorans AK-01]
 gi|218762113|gb|ACL04579.1| histone family protein DNA-binding protein [Desulfatibacillum
          alkenivorans AK-01]
          Length = 89

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL++ ++K  G ++KD+   V  +F  I ++  + +A+ +  F TF V ++ +R G
Sbjct: 1  MNKADLIEEVAKVLG-TKKDAQAAVDCVFATISEALKKDDAVTLVGFGTFKVDKRQARKG 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I  R V  F     LK  +
Sbjct: 60 RNPRTGEALDIPARNVPKFNPGKALKDAV 88


>gi|154493959|ref|ZP_02033279.1| hypothetical protein PARMER_03303 [Parabacteroides merdae ATCC
          43184]
 gi|154086219|gb|EDN85264.1| hypothetical protein PARMER_03303 [Parabacteroides merdae ATCC
          43184]
          Length = 91

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 45/85 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + RS L+  ++++ GL++KD  R +  +   I      G+ I +  F +F  + + SR  
Sbjct: 1  MNRSQLINILAQKTGLNKKDVKRTIDEMQKLIVQEVKEGQRICLHGFGSFKPRFQSSRPA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RNL+    V++ PR ++ FK +  L
Sbjct: 61 RNLKNGTAVQLSPRTIIHFKCAPHL 85


>gi|150003567|ref|YP_001298311.1| DNA-binding protein HU-beta [Bacteroides vulgatus ATCC 8482]
 gi|254881205|ref|ZP_05253915.1| DNA-binding protein HU-beta [Bacteroides sp. 4_3_47FAA]
 gi|294777624|ref|ZP_06743075.1| DNA-binding protein HU [Bacteroides vulgatus PC510]
 gi|319640215|ref|ZP_07994941.1| DNA-binding protein HU-beta [Bacteroides sp. 3_1_40A]
 gi|149931991|gb|ABR38689.1| DNA-binding protein HU-beta [Bacteroides vulgatus ATCC 8482]
 gi|254833998|gb|EET14307.1| DNA-binding protein HU-beta [Bacteroides sp. 4_3_47FAA]
 gi|294448692|gb|EFG17241.1| DNA-binding protein HU [Bacteroides vulgatus PC510]
 gi|317388202|gb|EFV69055.1| DNA-binding protein HU-beta [Bacteroides sp. 3_1_40A]
          Length = 90

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++ E GLS+ D+ + V    + +  +   G+ + +  F TF V ++ +R G
Sbjct: 1  MNKADLISAVAAEAGLSKVDAKKAVEAFVSTVTKALQEGDKVSLIGFGTFSVAERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T   + I  ++V  FK  + L   I
Sbjct: 61 INPSTKATITIPAKKVTKFKPGAELADAI 89


>gi|328543684|ref|YP_004303793.1| Histone-like DNA-binding protein [polymorphum gilvum SL003B-26A1]
 gi|326413428|gb|ADZ70491.1| Histone-like DNA-binding protein [Polymorphum gilvum SL003B-26A1]
          Length = 91

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++ GL++  +   V   F+ +  +   G+ ++I  F  F V ++ +  G
Sbjct: 1  MNKNDLIAAVAEKTGLTKAQAGEAVDATFDAVTATLKAGDEVRIIGFGNFSVSERAATEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + +KI   +   FKA   LK  +
Sbjct: 61 RNPRTGETIKIPASKTPKFKAGKGLKDAV 89


>gi|325274292|ref|ZP_08140403.1| DNA-binding protein HU-beta [Pseudomonas sp. TJI-51]
 gi|324100575|gb|EGB98310.1| DNA-binding protein HU-beta [Pseudomonas sp. TJI-51]
          Length = 90

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    +S+  + + +  + + +  +   G+ + +  F TF VK++  R G
Sbjct: 1  MNKSELIDAIAVSADISKAAAGKALDAVIDSVTGALKAGDDVVLVGFGTFTVKERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + +KI   +V  FKA   LK  +
Sbjct: 61 RNPQTGKAIKIAAAKVPGFKAGKGLKDAV 89


>gi|94971969|ref|YP_594009.1| histone-like DNA-binding protein [Deinococcus geothermalis DSM
           11300]
 gi|94554020|gb|ABF43935.1| histone-like protein DNA-binding protein [Deinococcus geothermalis
           DSM 11300]
          Length = 149

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           I ++ LV  ++ + GL++K S   V+ +   + D+  +G+++ +    T  VK   +R G
Sbjct: 51  IAKTQLVDMVADKTGLTKKQSEEAVSAMLGVVVDAIKQGKSVGLPGLGTLSVKATAARTG 110

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
               T++ ++I   + V FK +S LK  +
Sbjct: 111 VRPGTSERIQIPAGKKVAFKVASTLKSSL 139


>gi|48477447|ref|YP_023153.1| DNA-binding protein [Picrophilus torridus DSM 9790]
 gi|48430095|gb|AAT42960.1| DNA-binding protein [Picrophilus torridus DSM 9790]
          Length = 90

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 45/83 (54%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          S+L K+++K+   ++K +   +     E+   A  G+ I ++ F  F  K +  R  RN 
Sbjct: 5  SELSKTVAKKTDTTQKKARDVIREFLAEVVSQADSGQKINLAGFGIFERKTQSPRTARNP 64

Query: 68 QTNQEVKIDPRRVVVFKASSILK 90
          QT  E+K+  ++  VF+ASS +K
Sbjct: 65 QTRAEIKVPAKKKFVFRASSKIK 87


>gi|319645785|ref|ZP_08000015.1| DNA-binding protein HU 1 [Bacillus sp. BT1B_CT2]
 gi|317391535|gb|EFV72332.1| DNA-binding protein HU 1 [Bacillus sp. BT1B_CT2]
          Length = 91

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 44/71 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ ++++   L++KD    V + F+ I  +   GE +K+  F +F V+++ +R G
Sbjct: 1  MNKKELIGAVAEATELTKKDVELVVDSTFDVITSALKDGEKVKVHGFGSFEVRERAARKG 60

Query: 65 RNLQTNQEVKI 75
          RN Q+ +E++I
Sbjct: 61 RNPQSGEEIEI 71


>gi|329119849|ref|ZP_08248523.1| DNA-binding protein HU-beta [Neisseria bacilliformis ATCC
          BAA-1200]
 gi|327464005|gb|EGF10316.1| DNA-binding protein HU-beta [Neisseria bacilliformis ATCC
          BAA-1200]
          Length = 89

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++++++E  +S+  + + +  + N I  +  +G+ + +  F +F+V ++  R G
Sbjct: 1  MNKSELIEAMAQEADISKAAAAKALDGMVNAITAALKKGDTVTVVGFGSFYVGERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + + I   +   F+A   LK
Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKTLK 86


>gi|237801808|ref|ZP_04590269.1| integration host factor, beta subunit, putative [Pseudomonas
          syringae pv. oryzae str. 1_6]
 gi|331024667|gb|EGI04723.1| integration host factor, beta subunit, putative [Pseudomonas
          syringae pv. oryzae str. 1_6]
          Length = 91

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 45/84 (53%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + ++  +I+++  +++  + + +  +  EI  +  R E++ +  F TF  + +G+R G+N
Sbjct: 3  KPEVAAAIAEKADITKDQAKKVLDAILEEITGALHRKESVTLVGFGTFLQRHRGARTGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT + VKI     V FK    LK
Sbjct: 63 PQTGEPVKIKASNTVAFKPGKSLK 86


>gi|149193907|ref|ZP_01871005.1| non-specific DNA-binding protein [Caminibacter mediatlanticus
          TB-2]
 gi|149135860|gb|EDM24338.1| non-specific DNA-binding protein [Caminibacter mediatlanticus
          TB-2]
          Length = 102

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 45/87 (51%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +SDLV +++++ GLS+KD    +      I ++   GE +    F +F V  +  RV R 
Sbjct: 3  KSDLVAAVAEKTGLSKKDVAAVIDATIETIQEALKNGEKVSFIGFGSFEVVTRAPRVARV 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
            T +E+KI   + V FK    LK+ +
Sbjct: 63 PGTGKEIKIPETKSVKFKVGKKLKELV 89


>gi|71909124|ref|YP_286711.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB]
 gi|71848745|gb|AAZ48241.1| Histone-like bacterial DNA-binding protein [Dechloromonas
          aromatica RCB]
          Length = 99

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 47/87 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +S+LV+  +KE G+++  + + ++ +   +  +  +GE++ +  F TF   ++ +R G+N
Sbjct: 3  KSELVEVAAKEAGITKAAADKALSAIIGAVVATVTKGESVTLVGFGTFKSAKRAARTGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           +T   +KI    V  F A +  K  +
Sbjct: 63 PKTGATLKIPATTVPKFTAGTAFKASV 89


>gi|261855928|ref|YP_003263211.1| integration host factor subunit beta [Halothiobacillus
          neapolitanus c2]
 gi|261836397|gb|ACX96164.1| integration host factor, beta subunit [Halothiobacillus
          neapolitanus c2]
          Length = 101

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  ++ ++  LS +D    V  + +E+  S  RG+ I+I  F +F +  +  R+
Sbjct: 1  MTKSELIDRLADRQKYLSIRDIDTSVKLMLDEMISSMSRGDRIEIRGFGSFSLNYRKPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V +D + V  FK    L++R+
Sbjct: 61 GRNPKSGESVALDSKYVPHFKPGKELRERV 90


>gi|167562417|ref|ZP_02355333.1| Putative DNA-binding protein HU-alpha, HupA [Burkholderia
          oklahomensis EO147]
          Length = 90

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+++  LS+  + R +  L   + ++  +G A+ +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIARQADLSKSSAARALDALLGGVTNTLQQGGAVTLVGFGTFEVGKRAARGG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          R+ +T   ++I    V  F+A   LK
Sbjct: 61 RDPRTGAAIEIRAANVPKFRAGKALK 86


>gi|296140540|ref|YP_003647783.1| histone family protein DNA-binding protein [Tsukamurella
          paurometabola DSM 20162]
 gi|296028674|gb|ADG79444.1| histone family protein DNA-binding protein [Tsukamurella
          paurometabola DSM 20162]
          Length = 235

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ ++++ G  R+ +   V  + + I  +   G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIEELTEKLGTDRRTAGAAVEAIVDTIVRAVHAGDSVTITGFGVFEQRKRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + VK+ P  V  F+  +  K  I
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVI 89


>gi|34498009|ref|NP_902224.1| DNA-binding protein HU-beta [Chromobacterium violaceum ATCC
          12472]
 gi|34103864|gb|AAQ60224.1| DNA-binding protein hu-beta [Chromobacterium violaceum ATCC
          12472]
          Length = 89

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+ E  +S+  + + +  +   +  +  +G+ + +  F TF+V ++  R G
Sbjct: 1  MNKSELIDAIAAEADISKAAAAKALDGMVAAVTSALKKGDTVTLVGFGTFYVGERAERSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI   R   F+A   LK
Sbjct: 61 RNPKTGATIKIPAARSPKFRAGKALK 86


>gi|17231427|ref|NP_487975.1| DNA binding protein HU [Nostoc sp. PCC 7120]
 gi|75907988|ref|YP_322284.1| nucleoid protein Hbs [Anabaena variabilis ATCC 29413]
 gi|186685101|ref|YP_001868297.1| histone family protein DNA-binding protein [Nostoc punctiforme
          PCC 73102]
 gi|2506517|sp|P05514|DBH_ANASP RecName: Full=DNA-binding protein HU
 gi|31615985|pdb|1P51|A Chain A, Anabaena Hu-Dna Cocrystal Structure (Ahu6)
 gi|31615986|pdb|1P51|B Chain B, Anabaena Hu-Dna Cocrystal Structure (Ahu6)
 gi|31615987|pdb|1P51|C Chain C, Anabaena Hu-Dna Cocrystal Structure (Ahu6)
 gi|31615988|pdb|1P51|D Chain D, Anabaena Hu-Dna Cocrystal Structure (Ahu6)
 gi|31615997|pdb|1P71|A Chain A, Anabaena Hu-Dna Corcrystal Structure (Tr3)
 gi|31615998|pdb|1P71|B Chain B, Anabaena Hu-Dna Corcrystal Structure (Tr3)
 gi|31616001|pdb|1P78|A Chain A, Anabaena Hu-Dna Cocrystal Structure (Ahu2)
 gi|31616002|pdb|1P78|B Chain B, Anabaena Hu-Dna Cocrystal Structure (Ahu2)
 gi|1408581|gb|AAB06445.1|AAB06445 HU protein [Nostoc sp. PCC 7120]
 gi|998920|gb|AAB34352.1| HU [Anabaena]
 gi|17133069|dbj|BAB75634.1| DNA binding protein HU [Nostoc sp. PCC 7120]
 gi|75701713|gb|ABA21389.1| bacterial nucleoid protein Hbs [Anabaena variabilis ATCC 29413]
 gi|186467553|gb|ACC83354.1| histone family protein DNA-binding protein [Nostoc punctiforme
          PCC 73102]
          Length = 94

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/89 (21%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +++++  +++K +   +T     I ++   G+ + +  F +F  +++ +R G
Sbjct: 1  MNKGELVDAVAEKASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +TN++++I   RV  F A  + ++++
Sbjct: 61 RNPKTNEKMEIPATRVPAFSAGKLFREKV 89


>gi|251791422|ref|YP_003006143.1| transcriptional regulator HU subunit alpha [Dickeya zeae Ech1591]
 gi|271498813|ref|YP_003331838.1| histone family protein DNA-binding protein [Dickeya dadantii
          Ech586]
 gi|307129002|ref|YP_003881018.1| HU, DNA-binding transcriptional regulator, subunit alpha [Dickeya
          dadantii 3937]
 gi|247540043|gb|ACT08664.1| histone family protein DNA-binding protein [Dickeya zeae Ech1591]
 gi|270342368|gb|ACZ75133.1| histone family protein DNA-binding protein [Dickeya dadantii
          Ech586]
 gi|306526531|gb|ADM96461.1| HU, DNA-binding transcriptional regulator, alpha subunit [Dickeya
          dadantii 3937]
          Length = 90

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   +      I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKTQAKAALEATLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89


>gi|118443809|ref|YP_877121.1| DNA binding protein HU [Clostridium novyi NT]
 gi|118134265|gb|ABK61309.1| DNA binding protein HU [Clostridium novyi NT]
          Length = 92

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 49/87 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ S++++  L++KD    +      + ++ + G+ +++  F TF  +++  R G
Sbjct: 1  MNKSELITSMAEKSQLTKKDVEVALKAFIESVEEALMDGDKVQLVGFGTFETRERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T +E+ I    V VFKA    K+
Sbjct: 61 RNPRTKEEITIPAATVPVFKAGKEFKE 87


>gi|24372142|ref|NP_716184.1| HU family DNA-binding protein [Shewanella oneidensis MR-1]
 gi|24346038|gb|AAN53629.1|AE015502_3 DNA-binding protein, HU family [Shewanella oneidensis MR-1]
          Length = 90

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I++   +++  +TR + +    I +S   G+ I I  F +F    + +R G
Sbjct: 1  MNKTELIAKIAENADITKAQATRALKSFEAAITESMKNGDKISIVGFGSFETTTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I    V  FKA   L+
Sbjct: 61 RNPQTGKEIQIAEATVPKFKAGKTLR 86


>gi|270265438|ref|ZP_06193697.1| DNA-binding protein HU-alpha [Serratia odorifera 4Rx13]
 gi|1706309|sp|P52680|DBHA_SERMA RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2;
          AltName: Full=NS2
 gi|802006|gb|AAA65987.1| HU alpha [Serratia marcescens]
 gi|270040631|gb|EFA13736.1| DNA-binding protein HU-alpha [Serratia odorifera 4Rx13]
 gi|1586262|prf||2203354A heterodimeric HU protein
          Length = 90

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKAQAKLALESTLAAITESLKEGDAVQLVGFGTFKVNHRSERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89


>gi|220934118|ref|YP_002513017.1| histone family protein DNA-binding protein [Thioalkalivibrio sp.
          HL-EbGR7]
 gi|219995428|gb|ACL72030.1| histone family protein DNA-binding protein [Thioalkalivibrio sp.
          HL-EbGR7]
          Length = 90

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    L +  + R V  + + I  +   G+ + I  F TF V+++ +R G
Sbjct: 1  MNKSELIDAIAASSDLPKAQAARAVDAMIDVISGALKNGDQVTIVGFGTFLVREREARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + ++I   ++  FKA   LK  +
Sbjct: 61 RNPRTGETIQIAASKMPSFKAGKGLKDAV 89


>gi|146307081|ref|YP_001187546.1| nucleoid protein HU beta subunit [Pseudomonas mendocina ymp]
 gi|330503120|ref|YP_004379989.1| histone-like DNA-binding protein [Pseudomonas mendocina NK-01]
 gi|145575282|gb|ABP84814.1| bacterial nucleoid protein HU beta subunit [Pseudomonas mendocina
          ymp]
 gi|328917406|gb|AEB58237.1| histone-like DNA-binding protein [Pseudomonas mendocina NK-01]
          Length = 90

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  +   +  +   G+++ +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I   ++  FKA   LK  +
Sbjct: 61 RNPQTGKPISIAAAKIPGFKAGKALKDAV 89


>gi|215778378|ref|YP_002261518.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238]
 gi|208011423|emb|CAQ81887.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238]
          Length = 91

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLV  I+    LS++++T  +      I ++   GE + +  F TF V  + +R G
Sbjct: 1  MNKKDLVSHIADIADLSQQEATAALNATVESITNALKNGEEVTLIGFGTFKVNPRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   ++I    +  FKA   LK+ +
Sbjct: 61 RNPKTGDTIQIAASNMPAFKAGKALKEAV 89


>gi|291059654|gb|ADD72389.1| DNA-binding protein HU [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 154

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 4/96 (4%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           TRS +V ++  E  LSR+   R V +  + +  +  RGE +++  F  F  + + + VG+
Sbjct: 56  TRSFVVDALCDEVDLSRRHVARVVDSFVSVVTAALERGETVELRDFGVFESRVRKASVGK 115

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           +++T + V I    VVVF+ S    KR+   +RG +
Sbjct: 116 SIKTGEVVSIPSHCVVVFRPS----KRLKSAVRGYR 147


>gi|238022457|ref|ZP_04602883.1| hypothetical protein GCWU000324_02365 [Kingella oralis ATCC
          51147]
 gi|237867071|gb|EEP68113.1| hypothetical protein GCWU000324_02365 [Kingella oralis ATCC
          51147]
          Length = 102

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 7/96 (7%)

Query: 5  ITRSDLVKSISKEF-------GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          +T+S+L+  +++ F        L  KD    V  L + +  S  +G+ I+I  F +F + 
Sbjct: 1  MTKSELMARLAELFIENNEGTELQAKDIEYGVKVLVDTMTRSLAKGQRIEIRGFGSFDLN 60

Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           +  RVGRN +T + V++  +RV  FK    L++R+
Sbjct: 61 YRPPRVGRNPKTGERVEVPAKRVPHFKPGKELRERV 96


>gi|269125485|ref|YP_003298855.1| histone family protein DNA-binding protein [Thermomonospora
          curvata DSM 43183]
 gi|268310443|gb|ACY96817.1| histone family protein DNA-binding protein [Thermomonospora
          curvata DSM 43183]
          Length = 159

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R++L+++++   G     + R V  +F  I D    GE + ++ F TF    + +R  
Sbjct: 1  MNRTELIEAVAALAGSDPAVARRHVDAVFETIMDRVTAGERVLVTGFGTFDKLSRPARTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + V++ P     F+A    K R+
Sbjct: 61 RNPRTGEPVEVPPTETPRFRAGQTFKDRV 89


>gi|51246021|ref|YP_065905.1| DNA-binding protein HU [Desulfotalea psychrophila LSv54]
 gi|50877058|emb|CAG36898.1| probable DNA-binding protein HU [Desulfotalea psychrophila LSv54]
          Length = 90

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L++SI+    +S+  + + +      I ++  +G+ + +  F TF V ++ +R G
Sbjct: 1  MNKKELIESIADAADISKGAAEKALNGTLAAIAETLKKGDKVTLVGFGTFSVSKREARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +TN+ +KI  + +  FKA S L + I
Sbjct: 61 RNPRTNEVIKIPAKNIAKFKAGSKLSEAI 89


>gi|323144308|ref|ZP_08078923.1| integration host factor subunit beta [Succinatimonas hippei YIT
          12066]
 gi|322415899|gb|EFY06618.1| integration host factor subunit beta [Succinatimonas hippei YIT
          12066]
          Length = 92

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 5/92 (5%)

Query: 5  ITRSDLVKSI---SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +TR+DL+ S+    ++   S+ D +  V  +F ++ ++  +GE I+I  F +F V+ +  
Sbjct: 1  MTRADLINSLIARYRDIPPSQIDKS--VREIFEQMIETLSQGERIEIRGFGSFEVRLREP 58

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R+  N +T + V +  R+VV FK    L+ R+
Sbjct: 59 RIAHNPKTGERVDLPARKVVHFKPGVELRNRV 90


>gi|294787730|ref|ZP_06752974.1| integration host factor, beta subunit [Simonsiella muelleri ATCC
          29453]
 gi|294484023|gb|EFG31706.1| integration host factor, beta subunit [Simonsiella muelleri ATCC
          29453]
          Length = 101

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 7/96 (7%)

Query: 5  ITRSDLVKSISKEF-------GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          +T+S+L+  +++ F        L  KD    V  L + +  S  +G+ I+I  F +F + 
Sbjct: 1  MTKSELMTRLAEVFVEKNSDTELQTKDIEYSVKVLVDTMTRSLAKGQRIEIRGFGSFDLN 60

Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           + +RVGRN +T + V++  +RV  FK    L++R+
Sbjct: 61 DRPARVGRNPKTGERVEVPAKRVPHFKPGKELRERV 96


>gi|146309880|ref|YP_001174954.1| transcriptional regulator HU subunit alpha [Enterobacter sp. 638]
 gi|261340912|ref|ZP_05968770.1| DNA-binding protein HU-beta [Enterobacter cancerogenus ATCC
          35316]
 gi|296100631|ref|YP_003610777.1| transcriptional regulator HU subunit alpha [Enterobacter cloacae
          subsp. cloacae ATCC 13047]
 gi|145316756|gb|ABP58903.1| bacterial nucleoid protein HU alpha subunit [Enterobacter sp.
          638]
 gi|288316967|gb|EFC55905.1| DNA-binding protein HU-beta [Enterobacter cancerogenus ATCC
          35316]
 gi|295055090|gb|ADF59828.1| transcriptional regulator HU subunit alpha [Enterobacter cloacae
          subsp. cloacae ATCC 13047]
 gi|295095112|emb|CBK84202.1| bacterial nucleoid protein HU alpha subunit [Enterobacter cloacae
          subsp. cloacae NCTC 9394]
          Length = 90

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKVQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89


>gi|167645770|ref|YP_001683433.1| histone family protein DNA-binding protein [Caulobacter sp. K31]
 gi|167348200|gb|ABZ70935.1| histone family protein DNA-binding protein [Caulobacter sp. K31]
          Length = 92

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 8  SDLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          SDLV  +++ +  L++  +   +  +F  + ++AV+GE + I  F  F V+ K +R GRN
Sbjct: 4  SDLVDAAVAADDKLTKTQAKALIDGVFKSLTEAAVKGEEVSIPGFGKFKVQAKPARTGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
            T   ++I   + V F  +  LK  +
Sbjct: 64 PSTGAAIEIAASKKVAFTPAKQLKDAV 90


>gi|52425530|ref|YP_088667.1| HimA protein [Mannheimia succiniciproducens MBEL55E]
 gi|81691358|sp|Q65SH8|IHFB_MANSM RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|52307582|gb|AAU38082.1| HimA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 94

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++S + K   +S K     V  +   +  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIESLVEKNHSISVKSVENAVKEILEHMSQALESGDRIEIRGFGSFSLHFRQPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  +VK+D + V  FKA   L++R+
Sbjct: 61 GRNPKTGAQVKLDAKCVPHFKAGKELRERV 90


>gi|294676551|ref|YP_003577166.1| DNA-binding protein HU [Rhodobacter capsulatus SB 1003]
 gi|294475371|gb|ADE84759.1| DNA-binding protein HU-2 [Rhodobacter capsulatus SB 1003]
          Length = 91

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 44/86 (51%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M KT ++SDLV +++ + G ++ +    +      I      G  + +  F +F  +QK 
Sbjct: 1  MGKTFSKSDLVDAVAAQTGFAKTNVKDMLDATLGVITAQTEAGSKVTLMGFGSFEQRQKK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86
          +R+GRN  T ++V+I     + FK +
Sbjct: 61 ARMGRNPATGEQVEIPASAHLAFKPA 86


>gi|237711513|ref|ZP_04541994.1| DNA-binding protein HU-beta [Bacteroides sp. 9_1_42FAA]
 gi|237726030|ref|ZP_04556511.1| DNA-binding protein HU-beta [Bacteroides sp. D4]
 gi|265752938|ref|ZP_06088507.1| DNA-binding protein HU-beta [Bacteroides sp. 3_1_33FAA]
 gi|229435838|gb|EEO45915.1| DNA-binding protein HU-beta [Bacteroides dorei 5_1_36/D4]
 gi|229454208|gb|EEO59929.1| DNA-binding protein HU-beta [Bacteroides sp. 9_1_42FAA]
 gi|263236124|gb|EEZ21619.1| DNA-binding protein HU-beta [Bacteroides sp. 3_1_33FAA]
          Length = 90

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++ E GLS+ D+ + V    + +  +   G+ + +  F TF V ++ +R G
Sbjct: 1  MNKADLISAVAAEAGLSKVDAKKAVEAFVSTVTKALKEGDKVSLIGFGTFSVAERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T   + I  ++V  FK  + L   I
Sbjct: 61 INPSTKATITIPAKKVTKFKPGAELADAI 89


>gi|162448780|ref|YP_001611147.1| integration host factor beta-subunit [Sorangium cellulosum 'So ce
          56']
 gi|161159362|emb|CAN90667.1| integration host factor beta-subunit [Sorangium cellulosum 'So ce
          56']
          Length = 114

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+ +I+    L++  +   V  +F+ +  +  R E I+I  F +F V+      G
Sbjct: 1  MTKSELIDAIAGRGELTKARAELVVNCVFDAMTQALQRNEGIEIRGFGSFTVRPYKPYSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T Q V +  +R+  FK    LK+ +
Sbjct: 61 RNPRTGQPVPVPAKRLPFFKVGKELKELV 89


>gi|110598177|ref|ZP_01386454.1| Histone-like bacterial DNA-binding protein [Chlorobium
          ferrooxidans DSM 13031]
 gi|110340191|gb|EAT58689.1| Histone-like bacterial DNA-binding protein [Chlorobium
          ferrooxidans DSM 13031]
          Length = 91

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++++L++ I+ +  L++ D+ R +T     +  S   G  + ++ F TF    + +R G
Sbjct: 1  MSKAELIEKIAAQAKLTKADADRALTAFIGIVKASLKNGNDVPLAGFGTFATVDRAARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I  ++VV F+    LK  +
Sbjct: 61 RNPQTGKTITIAAKKVVKFRPGKSLKDEV 89


>gi|75676083|ref|YP_318504.1| histone-like DNA-binding protein [Nitrobacter winogradskyi
          Nb-255]
 gi|74420953|gb|ABA05152.1| Histone-like DNA-binding protein [Nitrobacter winogradskyi
          Nb-255]
          Length = 99

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 49/90 (54%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T   L  +++++  LS+K +   ++ +   I     +G+ I+I       V+++ +R 
Sbjct: 10 TVTLKHLAAALAEDHELSKKAAEAILSDMVTRITKHLKKGDRIRIVGLGILQVRKRAARK 69

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN  T +E++I   + V F+A+  LK+ I
Sbjct: 70 GRNPATGEEIQIKASKKVAFRAAKELKEAI 99


>gi|86356056|ref|YP_467948.1| integration host factor subunit beta [Rhizobium etli CFN 42]
 gi|116250186|ref|YP_766024.1| integration host factor subunit beta [Rhizobium leguminosarum bv.
          viciae 3841]
 gi|190890071|ref|YP_001976613.1| integration host factor beta-subunit protein [Rhizobium etli CIAT
          652]
 gi|209547655|ref|YP_002279572.1| integration host factor subunit beta [Rhizobium leguminosarum bv.
          trifolii WSM2304]
 gi|241202813|ref|YP_002973909.1| integration host factor subunit beta [Rhizobium leguminosarum bv.
          trifolii WSM1325]
 gi|123384964|sp|Q1MM94|IHFB_RHIL3 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|123765870|sp|Q2KD65|IHFB_RHIEC RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709801|sp|B3PZE1|IHFB_RHIE6 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709802|sp|B5ZN05|IHFB_RHILW RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|86280158|gb|ABC89221.1| integration host factor beta-subunit protein [Rhizobium etli CFN
          42]
 gi|115254834|emb|CAK05908.1| putative integration host factor beta subunit [Rhizobium
          leguminosarum bv. viciae 3841]
 gi|190695350|gb|ACE89435.1| integration host factor beta-subunit protein [Rhizobium etli CIAT
          652]
 gi|209533411|gb|ACI53346.1| integration host factor, beta subunit [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|240856703|gb|ACS54370.1| integration host factor, beta subunit [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 99

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ ++ +   L  +D    V  + +EI D+   G  +++  F  F VK + SR 
Sbjct: 1  MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V ++ + V  FK    L++R+
Sbjct: 61 GRNPRTGDTVFVEEKWVPFFKTGKELRERL 90


>gi|294634213|ref|ZP_06712759.1| DNA-binding protein HU-beta [Edwardsiella tarda ATCC 23685]
 gi|291092358|gb|EFE24919.1| DNA-binding protein HU-beta [Edwardsiella tarda ATCC 23685]
          Length = 90

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKTQAKAALESTLAAITESLKAGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89


>gi|268601568|ref|ZP_06135735.1| integration host factor beta-subunit [Neisseria gonorrhoeae
          PID18]
 gi|291043583|ref|ZP_06569299.1| integration host factor subunit beta [Neisseria gonorrhoeae DGI2]
 gi|268585699|gb|EEZ50375.1| integration host factor beta-subunit [Neisseria gonorrhoeae
          PID18]
 gi|291012046|gb|EFE04035.1| integration host factor subunit beta [Neisseria gonorrhoeae DGI2]
          Length = 98

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 6/95 (6%)

Query: 5  ITRSDLVKSISKEFG------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          +T+S+L+  +++ F       L  KD    V  L + +  S  RG+ I+I  F +F +  
Sbjct: 1  MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          + +R+GRN +T + V++  + V  FK    L++R+
Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERV 95


>gi|197302366|ref|ZP_03167423.1| hypothetical protein RUMLAC_01095 [Ruminococcus lactaris ATCC
          29176]
 gi|197298545|gb|EDY33088.1| hypothetical protein RUMLAC_01095 [Ruminococcus lactaris ATCC
          29176]
          Length = 90

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ + +++++  +S+KDS + +    + + +    G+ +++  F TF V ++ +R G
Sbjct: 1  MNKTEFIAAVAEKAEISKKDSEKALKAFVDVVAEQLKAGDKVQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I   +   FKA   LK  I
Sbjct: 61 RNPQTGETMTIAACKAPKFKAGKALKDAI 89


>gi|58979423|gb|AAW83376.1| DNA-binding protein HU [Campylobacter lari]
 gi|58979425|gb|AAW83377.1| DNA-binding protein HU [Campylobacter lari]
 gi|58979427|gb|AAW83378.1| DNA-binding protein HU [Campylobacter lari]
 gi|58979431|gb|AAW83380.1| DNA-binding protein HU [Campylobacter lari]
 gi|58979433|gb|AAW83381.1| DNA-binding protein HU [Campylobacter lari]
 gi|58979469|gb|AAW83399.1| DNA-binding protein HU [Campylobacter lari]
 gi|58979471|gb|AAW83400.1| DNA-binding protein HU [Campylobacter lari]
          Length = 100

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 42/80 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+T     +   I D   +G++I    F TF V ++ +R  
Sbjct: 1  MTKADFISQVAQTAGLTKKDATAATDAVIATITDVLAKGDSISFIGFGTFSVAERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFK 84
          R   T   +K+   +V  FK
Sbjct: 61 RVPSTGATIKVPATKVAKFK 80


>gi|146328836|ref|YP_001209044.1| integration host factor, beta subunit [Dichelobacter nodosus
          VCS1703A]
 gi|166918544|sp|A5EWQ2|IHFB_DICNV RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|146232306|gb|ABQ13284.1| integration host factor, beta subunit [Dichelobacter nodosus
          VCS1703A]
          Length = 96

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 54/94 (57%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ +  ++  L  +D    V  +   IC +  +G+ ++I  F +F +  + SR 
Sbjct: 1  MTKSELIERLVMKYPQLRAQDVEDTVKLMIERICHTLEKGDRVEIRGFGSFSLHYRESRQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T + V++  + +  F+A   L++R+ +++
Sbjct: 61 GRNPKTGESVRVPAKSIPYFRAGKELRERVDEEI 94


>gi|15602665|ref|NP_245737.1| HimD [Pasteurella multocida subsp. multocida str. Pm70]
 gi|14194850|sp|Q9CML8|IHFB_PASMU RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|12721104|gb|AAK02884.1| HimD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 94

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++  + K   ++ KD    V  + +++  +   G+ I++  F +F +  +  R+
Sbjct: 1  MTKSELIERLVQKCHAVAAKDVENAVKEILDQMSFALESGKRIEVRGFGSFSLHYRQPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++VK+D + V  FKA   L++R+
Sbjct: 61 GRNPKTGEQVKLDAKSVPHFKAGKELRERV 90


>gi|319898205|ref|YP_004158298.1| integration host factor beta chain [Bartonella clarridgeiae 73]
 gi|319402169|emb|CBI75695.1| integration host factor beta chain [Bartonella clarridgeiae 73]
          Length = 92

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D+   V  +F EI  +   G+ +++  F  F +K + +R 
Sbjct: 1  MVKSELVQIIARHNPHLMQRDAENVVNAIFEEISAALANGQRVELRGFGAFSIKTRLARN 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FK    L+ R+
Sbjct: 61 GRNPRTGETVMVEEKWVPFFKTGKDLRDRL 90


>gi|312889709|ref|ZP_07749257.1| histone family protein DNA-binding protein [Mucilaginibacter
          paludis DSM 18603]
 gi|311297829|gb|EFQ74950.1| histone family protein DNA-binding protein [Mucilaginibacter
          paludis DSM 18603]
          Length = 101

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 48/94 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D++  I+ + G  ++ +   +   F  +  S   GE + +  F TF VK++ +++G
Sbjct: 1  MTKADVIAGITAKTGKGKEATETIIDAFFEVVQSSLTNGEDVFVRGFGTFLVKKRAAKIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN+  N  V+I    +  F+     K ++   +R
Sbjct: 61 RNITKNTAVQIPESYIPAFRPGDEFKNKVKAAVR 94


>gi|260654666|ref|ZP_05860156.1| DNA-binding protein HU [Jonquetella anthropi E3_33 E1]
 gi|260630682|gb|EEX48876.1| DNA-binding protein HU [Jonquetella anthropi E3_33 E1]
          Length = 131

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+++LV+ + +   L R D+   V  +   I  +  +G  +++  F TF V+Q+ +R G
Sbjct: 21  VTKTELVEFVRENAQLKRSDAVAAVNAVVAGISGALSQGSKVQLVGFGTFEVRQRSARTG 80

Query: 65  RNLQ-TNQEVKIDPRRVVVFKASSILKKRI 93
           RN Q   + V I  ++V VFKA  +L+  +
Sbjct: 81  RNPQDPTKTVHIPAKKVPVFKAGKLLRSAV 110


>gi|262408098|ref|ZP_06084646.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_22]
 gi|294809492|ref|ZP_06768195.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b]
 gi|298484174|ref|ZP_07002340.1| HimA protein [Bacteroides sp. D22]
 gi|262354906|gb|EEZ03998.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_22]
 gi|294443310|gb|EFG12074.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b]
 gi|295084185|emb|CBK65708.1| Bacterial nucleoid DNA-binding protein [Bacteroides xylanisolvens
          XB1A]
 gi|298269678|gb|EFI11273.1| HimA protein [Bacteroides sp. D22]
          Length = 92

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 45/89 (50%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+   +    +++  G + KD++  + +L + +      G  I +  F +F VK+K  R+
Sbjct: 2  TMNNKEFTSELAERLGYTIKDTSELIGSLLSSMTQELEEGNVIAVQGFGSFEVKKKAERI 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
            N  + Q + + P+ V+ ++ S+ LK +
Sbjct: 62 SINPASKQRMLVPPKLVLSYRPSNTLKDK 90


>gi|15677168|ref|NP_274321.1| integration host factor beta-subunit [Neisseria meningitidis
          MC58]
 gi|121635014|ref|YP_975259.1| integration host factor beta-subunit [Neisseria meningitidis
          FAM18]
 gi|218768324|ref|YP_002342836.1| integration host factor subunit beta [Neisseria meningitidis
          Z2491]
 gi|254805103|ref|YP_003083324.1| integration host factor beta-subunit [Neisseria meningitidis
          alpha14]
 gi|261400687|ref|ZP_05986812.1| integration host factor, beta subunit [Neisseria lactamica ATCC
          23970]
 gi|268594993|ref|ZP_06129160.1| integration host factor subunit beta [Neisseria gonorrhoeae
          35/02]
 gi|268596627|ref|ZP_06130794.1| integration host factor subunit beta [Neisseria gonorrhoeae FA19]
 gi|268603907|ref|ZP_06138074.1| integration host factor beta-subunit [Neisseria gonorrhoeae PID1]
 gi|268682370|ref|ZP_06149232.1| integration host factor beta-subunit [Neisseria gonorrhoeae
          PID332]
 gi|268684528|ref|ZP_06151390.1| integration host factor beta-subunit [Neisseria gonorrhoeae
          SK-92-679]
 gi|293398895|ref|ZP_06643060.1| integration host factor, beta subunit [Neisseria gonorrhoeae F62]
 gi|304387392|ref|ZP_07369584.1| integration host factor beta subunit [Neisseria meningitidis ATCC
          13091]
 gi|313668441|ref|YP_004048725.1| integration host factor beta-subunit [Neisseria lactamica ST-640]
 gi|60392449|sp|P0A0U1|IHFB_NEIMA RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|60392450|sp|P0A0U2|IHFB_NEIMB RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|60392451|sp|P0A0U3|IHFB_NEIGO RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|166918555|sp|A1KUD0|IHFB_NEIMF RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|7226542|gb|AAF41677.1| integration host factor, beta subunit [Neisseria meningitidis
          MC58]
 gi|9965584|gb|AAG10095.1| IfhA [Neisseria gonorrhoeae]
 gi|120866720|emb|CAM10473.1| integration host factor beta-subunit [Neisseria meningitidis
          FAM18]
 gi|121052332|emb|CAM08663.1| integration host factor beta-subunit [Neisseria meningitidis
          Z2491]
 gi|254668645|emb|CBA06291.1| integration host factor beta-subunit [Neisseria meningitidis
          alpha14]
 gi|254670493|emb|CBA06219.1| integration host factor beta-subunit [Neisseria meningitidis
          alpha153]
 gi|254673141|emb|CBA07940.1| integration host factor beta-subunit [Neisseria meningitidis
          alpha275]
 gi|261392417|emb|CAX49959.1| integration host factor beta-subunit (IHF-beta) [Neisseria
          meningitidis 8013]
 gi|268548382|gb|EEZ43800.1| integration host factor subunit beta [Neisseria gonorrhoeae
          35/02]
 gi|268550415|gb|EEZ45434.1| integration host factor subunit beta [Neisseria gonorrhoeae FA19]
 gi|268588038|gb|EEZ52714.1| integration host factor beta-subunit [Neisseria gonorrhoeae PID1]
 gi|268622654|gb|EEZ55054.1| integration host factor beta-subunit [Neisseria gonorrhoeae
          PID332]
 gi|268624812|gb|EEZ57212.1| integration host factor beta-subunit [Neisseria gonorrhoeae
          SK-92-679]
 gi|269209603|gb|EEZ76058.1| integration host factor, beta subunit [Neisseria lactamica ATCC
          23970]
 gi|291610309|gb|EFF39419.1| integration host factor, beta subunit [Neisseria gonorrhoeae F62]
 gi|304338643|gb|EFM04761.1| integration host factor beta subunit [Neisseria meningitidis ATCC
          13091]
 gi|308389422|gb|ADO31742.1| integration host factor beta-subunit [Neisseria meningitidis
          alpha710]
 gi|309379233|emb|CBX22190.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313005903|emb|CBN87359.1| integration host factor beta-subunit [Neisseria lactamica 020-06]
 gi|319410569|emb|CBY90938.1| integration host factor beta-subunit (IHF-beta) [Neisseria
          meningitidis WUE 2594]
 gi|325128401|gb|EGC51284.1| integration host factor, beta subunit [Neisseria meningitidis
          N1568]
 gi|325130334|gb|EGC53100.1| integration host factor, beta subunit [Neisseria meningitidis
          OX99.30304]
 gi|325132497|gb|EGC55190.1| integration host factor, beta subunit [Neisseria meningitidis
          M6190]
 gi|325134456|gb|EGC57101.1| integration host factor, beta subunit [Neisseria meningitidis
          M13399]
 gi|325136194|gb|EGC58802.1| integration host factor, beta subunit [Neisseria meningitidis
          M0579]
 gi|325138271|gb|EGC60840.1| integration host factor, beta subunit [Neisseria meningitidis
          ES14902]
 gi|325140473|gb|EGC62994.1| integration host factor, beta subunit [Neisseria meningitidis
          CU385]
 gi|325142525|gb|EGC64926.1| integration host factor, beta subunit [Neisseria meningitidis
          961-5945]
 gi|325144557|gb|EGC66856.1| integration host factor, beta subunit [Neisseria meningitidis
          M01-240013]
 gi|325198454|gb|ADY93910.1| integration host factor, beta subunit [Neisseria meningitidis
          G2136]
 gi|325200072|gb|ADY95527.1| integration host factor, beta subunit [Neisseria meningitidis
          H44/76]
 gi|325201987|gb|ADY97441.1| integration host factor, beta subunit [Neisseria meningitidis
          M01-240149]
 gi|325204303|gb|ADY99756.1| integration host factor, beta subunit [Neisseria meningitidis
          M01-240355]
 gi|325205924|gb|ADZ01377.1| integration host factor, beta subunit [Neisseria meningitidis
          M04-240196]
 gi|325208262|gb|ADZ03714.1| integration host factor, beta subunit [Neisseria meningitidis
          NZ-05/33]
          Length = 104

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 6/95 (6%)

Query: 5  ITRSDLVKSISKEFG------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          +T+S+L+  +++ F       L  KD    V  L + +  S  RG+ I+I  F +F +  
Sbjct: 1  MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          + +R+GRN +T + V++  + V  FK    L++R+
Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERV 95


>gi|333029611|ref|ZP_08457672.1| histone family protein DNA-binding protein [Bacteroides coprosuis
          DSM 18011]
 gi|332740208|gb|EGJ70690.1| histone family protein DNA-binding protein [Bacteroides coprosuis
          DSM 18011]
          Length = 90

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 48/81 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++ GLS+ DS + +    + + D+   G+ + +  F TF V ++ +R G
Sbjct: 1  MNKAELISAMAEKSGLSKVDSKKALDAFMSVVSDTLKSGDKVSLIGFGTFSVSERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKA 85
           N  T + ++I  ++V  FKA
Sbjct: 61 INPATQKPIEIPAKKVAKFKA 81


>gi|239908260|ref|YP_002955001.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
          RS-1]
 gi|239798126|dbj|BAH77115.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
          RS-1]
          Length = 92

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+K++ +++ L  + +  FV   F+ I  +    + ++I  F +F VK+     G
Sbjct: 1  MNKGELIKAVGEKYNLDYEFAVDFVNLFFDSIRQALNNEDRVEIRGFGSFAVKKYNGYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   V+I P+++  FK     K+ +
Sbjct: 61 RNPKTGVTVEIKPKKLPFFKPGKDFKEYL 89


>gi|254443383|ref|ZP_05056859.1| DNA-binding protein HU [Verrucomicrobiae bacterium DG1235]
 gi|198257691|gb|EDY81999.1| DNA-binding protein HU [Verrucomicrobiae bacterium DG1235]
          Length = 104

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 7/104 (6%)

Query: 1   MSKTITRSDLVKSI---SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
           MS  +T+ D+V  I   +K+   S+   T  V    + I D+   G  +++ +F  F V+
Sbjct: 1   MSNNLTKRDIVLRIFEKTKDIPQSKIQDT--VQMTLDIILDALAEGRNVELRNFGVFEVQ 58

Query: 58  QKGSRVGRNLQTNQ-EVKIDPRRVVVFKASSILKKRIMD-DMRG 99
           ++ +RVGRN    + +V I  R VV FKA  +LK +I D D+ G
Sbjct: 59  KRKARVGRNPNRPETDVVIPTRAVVKFKAGKVLKAKIKDIDLEG 102


>gi|89095458|ref|ZP_01168369.1| DNA-binding protein HU [Oceanospirillum sp. MED92]
 gi|89080288|gb|EAR59549.1| DNA-binding protein HU [Oceanospirillum sp. MED92]
          Length = 91

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +      +  +   G+++ +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAASADIPKAAAGRALDATLEAVTGALQNGDSVALVGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I    +  FK    LK  +
Sbjct: 61 RNPQTGKPIEIAAATLPTFKPGKALKDAV 89


>gi|119776290|ref|YP_929030.1| histone-like DNA-binding protein [Shewanella amazonensis SB2B]
 gi|119768790|gb|ABM01361.1| histone-like DNA-binding protein [Shewanella amazonensis SB2B]
          Length = 90

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSRV 63
          + R++L+  I++   L++ ++ R + + F E   +A++ G+ I I  F +F    +  R 
Sbjct: 1  MNRTELIAKIAESADLTKAEAGRALKS-FEEAVTAAMKDGDKISIVGFGSFETSTRAERT 59

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN QT +E+KI    +  FKA   L+
Sbjct: 60 GRNPQTGKEIKIPAATIPKFKAGKALR 86


>gi|319952649|ref|YP_004163916.1| histone family protein DNA-binding protein [Cellulophaga algicola
          DSM 14237]
 gi|319421309|gb|ADV48418.1| histone family protein DNA-binding protein [Cellulophaga algicola
          DSM 14237]
          Length = 96

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 44/85 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  IS++ G+ + D    V +   E+  S   G+ + +  F +F +K +  + G
Sbjct: 1  MTKADIVTRISEKLGIEKGDVQATVESFMEEVKYSLENGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  +KI    +  FK + + 
Sbjct: 61 RNISKNTTIKIPAHNIPSFKPAKVF 85


>gi|317484392|ref|ZP_07943308.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
 gi|316924344|gb|EFV45514.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
          Length = 97

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQK 59
          MSKT+T++D+ KSI  +  + ++ + + +  +   I   A++ E  + +S F  F    K
Sbjct: 1  MSKTVTKADIAKSICAQSEMKQQHAKKVLDAMLG-IMKKALKEEKEMLLSGFGKFEAFTK 59

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKAS 86
           +R GRN QT +E+ +D   V+ F+ S
Sbjct: 60 KNRKGRNPQTGEEITLDSHDVLAFRIS 86


>gi|260593420|ref|ZP_05858878.1| DNA-binding protein HU-beta [Prevotella veroralis F0319]
 gi|260534696|gb|EEX17313.1| DNA-binding protein HU-beta [Prevotella veroralis F0319]
          Length = 91

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 47/85 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+    LS+ D+ + +      I D+ V G+ +++  F TF   ++ +  G
Sbjct: 1  MNKTELIEKIAASANLSKADAKKALDATTEAIKDALVAGDKVQLVGFGTFSTNERPAHEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N  T Q+++I  ++V  FKA + L
Sbjct: 61 MNPATKQKIQIPAKKVAKFKAGAEL 85


>gi|170748862|ref|YP_001755122.1| integration host factor, beta subunit [Methylobacterium
          radiotolerans JCM 2831]
 gi|170655384|gb|ACB24439.1| integration host factor, beta subunit [Methylobacterium
          radiotolerans JCM 2831]
          Length = 103

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV  I+++   L ++D    V  + + I D+  RG+ +++  F  F VK++ +R 
Sbjct: 1  MIKSELVLKIAEQNPHLYQRDVEILVNAILDTISDALARGDRVELRGFGAFSVKRREARR 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  + + VFK    +++R+
Sbjct: 61 GRNPRTGAAVAVSEKAIPVFKTGKEMRQRL 90


>gi|56751859|ref|YP_172560.1| DNA-binding protein HU [Synechococcus elongatus PCC 6301]
 gi|81301057|ref|YP_401265.1| nucleoid protein Hbs [Synechococcus elongatus PCC 7942]
 gi|56686818|dbj|BAD80040.1| DNA binding protein HU [Synechococcus elongatus PCC 6301]
 gi|81169938|gb|ABB58278.1| bacterial nucleoid protein Hbs [Synechococcus elongatus PCC 7942]
          Length = 91

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  ++   GL++      +  L + I D+ V GE + I  F  F  +++  R G
Sbjct: 1  MNKGELIDQVAVRTGLTKVQVAAAIDALVDVIVDTVVEGEKVSILGFGAFEARERSERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T  ++ I  ++V  F A  + K R+
Sbjct: 61 LNPKTGDKILIPAKKVPAFTAGKLFKDRV 89


>gi|57504971|ref|ZP_00370923.1| DNA-binding protein HU [Campylobacter coli RM2228]
 gi|305432029|ref|ZP_07401196.1| DNA-binding protein HU [Campylobacter coli JV20]
 gi|57019243|gb|EAL55949.1| DNA-binding protein HU [Campylobacter coli RM2228]
 gi|58979339|gb|AAW83334.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979349|gb|AAW83339.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979351|gb|AAW83340.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979353|gb|AAW83341.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979355|gb|AAW83342.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979357|gb|AAW83343.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979363|gb|AAW83346.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979377|gb|AAW83353.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979393|gb|AAW83361.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979395|gb|AAW83362.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979409|gb|AAW83369.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979413|gb|AAW83371.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979463|gb|AAW83396.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979465|gb|AAW83397.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979467|gb|AAW83398.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979571|gb|AAW83450.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979573|gb|AAW83451.1| DNA-binding protein HU [Campylobacter coli]
 gi|304445113|gb|EFM37759.1| DNA-binding protein HU [Campylobacter coli JV20]
          Length = 96

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 43/80 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+T     + + I D   +G+++    F TF   ++ +R  
Sbjct: 1  MTKADFISQVAQTAGLTKKDATAATDAVISTITDVLAKGDSVSFIGFGTFSTAERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFK 84
          R   T + +K+   RV  FK
Sbjct: 61 RVPSTGKTIKVPATRVAKFK 80


>gi|329964256|ref|ZP_08301357.1| DNA-binding protein HU-beta [Bacteroides fluxus YIT 12057]
 gi|328525561|gb|EGF52604.1| DNA-binding protein HU-beta [Bacteroides fluxus YIT 12057]
          Length = 88

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 48/85 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ E GLS+ DS + +      +  +   G+ + +  F TF V ++ +R+G
Sbjct: 1  MNKAELISAMAAEAGLSKVDSKKALDAFIVSVTKAMKAGDKVSLVGFGTFSVAERSARMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N  T + ++I  ++VV FK  + L
Sbjct: 61 INPSTKKPIEIAAKKVVKFKPGAEL 85


>gi|239905786|ref|YP_002952525.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
          RS-1]
 gi|239795650|dbj|BAH74639.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
          RS-1]
          Length = 91

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRK-DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + ++D++  I    G++ K ++ + +  +   I +S V GEA+ ++ F TF V ++ +R 
Sbjct: 1  MAKTDIIAKIQANAGIATKAEAGKVLDAVLGAIQESLVGGEALTLTGFGTFKVSERAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GR+ +T   + I   + V F     LK  +
Sbjct: 61 GRDPRTGNPIDIPASKAVRFTPGKTLKDAV 90


>gi|315918607|ref|ZP_07914847.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692482|gb|EFS29317.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 92

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 45/89 (50%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+   +    +++  G + KD++  + +L + +      G  + I  F +F VK+K  R+
Sbjct: 2  TMNNKEFTSELAERLGYTIKDTSELMNSLLSSMTQELEEGNVVAIQGFGSFEVKKKAERI 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
            N  + Q + + P+ V+ ++ S+ LK +
Sbjct: 62 SINPASKQRMLVPPKLVLSYRPSNTLKDK 90


>gi|269137541|ref|YP_003294241.1| transcriptional regulator HU subunit alpha [Edwardsiella tarda
          EIB202]
 gi|267983201|gb|ACY83030.1| transcriptional regulator HU subunit alpha [Edwardsiella tarda
          EIB202]
 gi|304557615|gb|ADM40279.1| DNA-binding protein HU-alpha [Edwardsiella tarda FL6-60]
          Length = 90

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKTQAKAALESTLAAITESLKAGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGNEIKIAAANVPAFVSGKALKDAV 89


>gi|225075202|ref|ZP_03718401.1| hypothetical protein NEIFLAOT_00202 [Neisseria flavescens
          NRL30031/H210]
 gi|241758896|ref|ZP_04757009.1| integration host factor, beta subunit [Neisseria flavescens
          SK114]
 gi|261380193|ref|ZP_05984766.1| integration host factor, beta subunit [Neisseria subflava NJ9703]
 gi|319638404|ref|ZP_07993166.1| integration host factor subunit beta [Neisseria mucosa C102]
 gi|224953377|gb|EEG34586.1| hypothetical protein NEIFLAOT_00202 [Neisseria flavescens
          NRL30031/H210]
 gi|241321104|gb|EER57317.1| integration host factor, beta subunit [Neisseria flavescens
          SK114]
 gi|284797040|gb|EFC52387.1| integration host factor, beta subunit [Neisseria subflava NJ9703]
 gi|317400153|gb|EFV80812.1| integration host factor subunit beta [Neisseria mucosa C102]
          Length = 104

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 6/95 (6%)

Query: 5  ITRSDLVKSISKEFG------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          +T+S+L+  +++ F       L  KD    V  L + +  S  RG+ I+I  F +F +  
Sbjct: 1  MTKSELMVRLAEVFAEKNGNQLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          + +R+GRN +T + V++  + V  FK    L++R+
Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERV 95


>gi|85709918|ref|ZP_01040983.1| integration host factor beta-subunit [Erythrobacter sp. NAP1]
 gi|85688628|gb|EAQ28632.1| integration host factor beta-subunit [Erythrobacter sp. NAP1]
          Length = 93

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L+  + K+   L  ++  + V   F+EI      G  +++  F  F  + + +R 
Sbjct: 1  MIRSELLTELHKDNPELRSEEVEQVVDIFFDEISQRLAEGGRVELRGFGAFSTRDREART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V++  +RV  FKA   ++ R+ +D
Sbjct: 61 GRNPRTGEAVEVPAKRVPYFKAGKEIRNRLNED 93


>gi|255067152|ref|ZP_05319007.1| integration host factor, beta subunit [Neisseria sicca ATCC
          29256]
 gi|261365784|ref|ZP_05978667.1| integration host factor, beta subunit [Neisseria mucosa ATCC
          25996]
 gi|255048520|gb|EET43984.1| integration host factor, beta subunit [Neisseria sicca ATCC
          29256]
 gi|288565692|gb|EFC87252.1| integration host factor, beta subunit [Neisseria mucosa ATCC
          25996]
          Length = 104

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 6/95 (6%)

Query: 5  ITRSDLVKSISKEFG------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          +T+S+L+  +++ F       L  KD    V  L + +  S  RG+ I+I  F +F +  
Sbjct: 1  MTKSELMVRLAEVFAEKNGNQLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          + +R+GRN +T + V++  + V  FK    L++R+
Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERV 95


>gi|114569526|ref|YP_756206.1| histone family protein DNA-binding protein [Maricaulis maris
          MCS10]
 gi|114339988|gb|ABI65268.1| histone family protein DNA-binding protein [Maricaulis maris
          MCS10]
          Length = 88

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL K+++++ GLSR  +   V +    I  S    ++++I+ F TF+ K + +R  
Sbjct: 1  MNKSDLAKAVAEKTGLSRAQAGEAVDSAIEAIVGSVKGNDSVQIAGFGTFYAKHREAREV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + +    R    F+ ++ LK
Sbjct: 61 RNPRTGETMMSKARTQAAFRPAAALK 86


>gi|124267145|ref|YP_001021149.1| nucleoid protein Hbs [Methylibium petroleiphilum PM1]
 gi|124259920|gb|ABM94914.1| bacterial nucleoid protein Hbs [Methylibium petroleiphilum PM1]
          Length = 90

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+K+  +S+  +TR +  L   +  +  +G ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIAKQADISKAAATRALEALIGGVRTTLKKGGSVSLVGFGTFAVTKRAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI   +V  F+    LK
Sbjct: 61 RNPRTGDTIKIKAAKVPKFRPGKALK 86


>gi|254453509|ref|ZP_05066946.1| integration host factor, beta subunit [Octadecabacter antarcticus
          238]
 gi|254455028|ref|ZP_05068464.1| integration host factor, beta subunit [Octadecabacter antarcticus
          238]
 gi|198263730|gb|EDY88001.1| integration host factor, beta subunit [Octadecabacter antarcticus
          238]
 gi|198267915|gb|EDY92185.1| integration host factor, beta subunit [Octadecabacter antarcticus
          238]
          Length = 95

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L   I+ E   L  + +   V T+F  I  +  RG  ++I  F  F  +Q+  R+
Sbjct: 2  MIRSELYAKIAAENRHLMHEQAVAVVDTIFETITAALERGNRVEIRGFGAFSCRQREGRI 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +    V + P+ +  FK   +++ R+
Sbjct: 62 GRNPKNGASVDVAPKVIPWFKLGKVIRDRL 91


>gi|323436199|ref|ZP_01051348.2| DNA-binding protein HU-beta [Dokdonia donghaensis MED134]
 gi|321496514|gb|EAQ37896.2| DNA-binding protein HU-beta [Dokdonia donghaensis MED134]
          Length = 90

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 49/85 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  +++  G+++  + + + +   ++  +  +G  + +  F ++ V ++ +R G
Sbjct: 1  MNKSELIDGMAEHAGITKAAAKKALESFLGDVEGTLKKGGRVSLVGFGSWSVSKRNAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN QT + +KI  + VV FKA S L
Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGSEL 85


>gi|167754218|ref|ZP_02426345.1| hypothetical protein ALIPUT_02511 [Alistipes putredinis DSM
          17216]
 gi|237711927|ref|ZP_04542408.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA]
 gi|317474934|ref|ZP_07934203.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
 gi|167658843|gb|EDS02973.1| hypothetical protein ALIPUT_02511 [Alistipes putredinis DSM
          17216]
 gi|229454622|gb|EEO60343.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA]
 gi|316908837|gb|EFV30522.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 93

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 45/92 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I+ + GL ++   + V    + +  S + GE + +  F +F +K +  +  
Sbjct: 1  MTKADIVREIATQTGLEKQVVLQVVEGFMDSVKSSMINGEEVYLRGFGSFIIKHRAEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN+  N  V +    +  FK S     R+  D
Sbjct: 61 RNISRNTTVIVPAHNIPAFKPSKAFAGRMKSD 92


>gi|298368833|ref|ZP_06980151.1| DNA-binding protein HU-beta [Neisseria sp. oral taxon 014 str.
          F0314]
 gi|298282836|gb|EFI24323.1| DNA-binding protein HU-beta [Neisseria sp. oral taxon 014 str.
          F0314]
          Length = 89

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I++E G+S+  + + +    N + ++   G+ + +  F TF+V ++  R G
Sbjct: 1  MNKSELIEAIAQEAGISKAAAAKALDATTNAVTNALKNGDTVTLVGFGTFYVGERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   + I   +   F+A   LK
Sbjct: 61 RNPKTGAPLTIAAAKTPKFRAGKALK 86


>gi|15606646|ref|NP_214026.1| DNA binding protein HU [Aquifex aeolicus VF5]
 gi|14194592|sp|O67461|DBH_AQUAE RecName: Full=DNA-binding protein HU
 gi|2983862|gb|AAC07415.1| DNA binding protein HU [Aquifex aeolicus VF5]
          Length = 94

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 41/67 (61%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
          + +K+    V+ +F  I +  ++GE +KIS F TF VK +  + G N++  + V++  R+
Sbjct: 22 IQKKEVYNLVSEVFTIIQECLLKGEKVKISGFGTFVVKTRKPKKGMNIKKREIVEVPERK 81

Query: 80 VVVFKAS 86
          +V+FK S
Sbjct: 82 IVLFKPS 88


>gi|319954832|ref|YP_004166099.1| histone family protein DNA-binding protein [Cellulophaga algicola
          DSM 14237]
 gi|319423492|gb|ADV50601.1| histone family protein DNA-binding protein [Cellulophaga algicola
          DSM 14237]
          Length = 90

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ + G+++  + + + +    +  S  +G+ + +  F ++ V ++ +R G
Sbjct: 1  MNKTELIDAMAADAGITKAAAKKALESFLGNVEGSLKKGDRVSLVGFGSWSVSKREARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   +KI  + VV FKA + L K +
Sbjct: 61 RNPQTGATIKIAAKNVVKFKAGAELAKAV 89


>gi|238765544|ref|ZP_04626458.1| DNA-binding protein HU-alpha [Yersinia kristensenii ATCC 33638]
 gi|238696239|gb|EEP89042.1| DNA-binding protein HU-alpha [Yersinia kristensenii ATCC 33638]
          Length = 91

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKVQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89


>gi|126701120|ref|YP_001090017.1| DNA-binding protein HU [Clostridium difficile 630]
 gi|254977121|ref|ZP_05273593.1| DNA-binding protein HU [Clostridium difficile QCD-66c26]
 gi|255094450|ref|ZP_05323928.1| DNA-binding protein HU [Clostridium difficile CIP 107932]
 gi|255102706|ref|ZP_05331683.1| DNA-binding protein HU [Clostridium difficile QCD-63q42]
 gi|255308527|ref|ZP_05352698.1| DNA-binding protein HU [Clostridium difficile ATCC 43255]
 gi|255316201|ref|ZP_05357784.1| DNA-binding protein HU [Clostridium difficile QCD-76w55]
 gi|255518863|ref|ZP_05386539.1| DNA-binding protein HU [Clostridium difficile QCD-97b34]
 gi|255652042|ref|ZP_05398944.1| DNA-binding protein HU [Clostridium difficile QCD-37x79]
 gi|255657453|ref|ZP_05402862.1| DNA-binding protein HU [Clostridium difficile QCD-23m63]
 gi|260685016|ref|YP_003216301.1| DNA-binding protein HU [Clostridium difficile CD196]
 gi|260688674|ref|YP_003219808.1| DNA-binding protein HU [Clostridium difficile R20291]
 gi|296449048|ref|ZP_06890838.1| DNA-binding protein HU [Clostridium difficile NAP08]
 gi|296879871|ref|ZP_06903844.1| DNA-binding protein HU [Clostridium difficile NAP07]
 gi|115252557|emb|CAJ70400.1| Non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Clostridium difficile]
 gi|260211179|emb|CBA66647.1| DNA-binding protein HU [Clostridium difficile CD196]
 gi|260214691|emb|CBE07338.1| DNA-binding protein HU [Clostridium difficile R20291]
 gi|296262141|gb|EFH08946.1| DNA-binding protein HU [Clostridium difficile NAP08]
 gi|296429160|gb|EFH15034.1| DNA-binding protein HU [Clostridium difficile NAP07]
          Length = 92

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  ++++ GL++K++   +    + + D+ V  E +++  F TF  +++ +R G
Sbjct: 1  MNKAELVSKMAEKSGLTKKEAEAALNAFMSSVQDALVNNEKVQLVGFGTFETRERAARQG 60

Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILK 90
          RN +  ++V  I   +  VFKA   LK
Sbjct: 61 RNPRDPEQVIDIPASKAPVFKAGKGLK 87


>gi|82703188|ref|YP_412754.1| integration host factor, beta subunit [Nitrosospira multiformis
          ATCC 25196]
 gi|123740640|sp|Q2Y7A9|IHFB_NITMU RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|82411253|gb|ABB75362.1| integration host factor, beta subunit [Nitrosospira multiformis
          ATCC 25196]
          Length = 94

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  ++ +   L  KD+   V  + + +  S  +G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIARLAARHPQLGTKDAELAVKVILDAMAKSLSQGQRIEIRGFGSFDLNYRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V++  + V  FKA   +++R+
Sbjct: 61 GRNPKSGEKVRVPEKYVPHFKAGKEMRERV 90


>gi|121997401|ref|YP_001002188.1| histone family protein DNA-binding protein [Halorhodospira
          halophila SL1]
 gi|121588806|gb|ABM61386.1| histone family protein DNA-binding protein [Halorhodospira
          halophila SL1]
          Length = 90

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++++    LS+  + R V  +   + D+   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSELIEAVADSADLSKAAAARAVDAMVESVTDALREGDQVTLVGFGTFTVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I   +V  FK    LK  I
Sbjct: 61 RNPRTGESIDIPASKVPGFKPGKALKDAI 89


>gi|294673496|ref|YP_003574112.1| HU family DNA-binding protein [Prevotella ruminicola 23]
 gi|294473143|gb|ADE82532.1| DNA-binding protein, HU family [Prevotella ruminicola 23]
          Length = 95

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   D +  +++  G S  ++ +FV  +   + D     +++ I +F TF VK+K  R+ 
Sbjct: 1  MNNKDFITELAQRTGYSADETQQFVNCVVEAMGDHFQDDDSVLIPTFGTFEVKKKMERIM 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T Q + + P+ V+ FK +   K+R+
Sbjct: 61 VNPSTGQRMLVPPKLVLTFKPNVSWKERV 89


>gi|238756047|ref|ZP_04617370.1| DNA-binding protein HU-alpha [Yersinia ruckeri ATCC 29473]
 gi|238705714|gb|EEP98108.1| DNA-binding protein HU-alpha [Yersinia ruckeri ATCC 29473]
          Length = 90

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L++ I+ +  LS+  +   + +    I +S   GE +++  F TF V  +  R G
Sbjct: 1  MNKTQLIEVIADKADLSKTQAKAALESTLAAITESLKDGEQVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+KI    V  F +   LK
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALK 86


>gi|302668930|ref|YP_003832755.1| DNA-binding protein [Butyrivibrio proteoclasticus B316]
 gi|302397270|gb|ADL36173.1| DNA-binding protein [Butyrivibrio proteoclasticus B316]
          Length = 92

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++K  GLS+KD+ + +  L   +     +   +++  F TF   ++ +R G
Sbjct: 1  MNKTELIDAMAKATGLSKKDAGKALDALTGTVSKELKKKGKVQLVGFGTFETVKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          +N QT   +KI       FKA   LK
Sbjct: 61 KNPQTGAAIKIPASIAPKFKAGKALK 86


>gi|58979335|gb|AAW83332.1| DNA-binding protein HU [Campylobacter coli]
          Length = 96

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 43/80 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+T     + + I D   +G+++    F TF   ++ +R  
Sbjct: 1  MTKADFISQVAQTAGLTKKDATAATDAVISTITDVLTKGDSVSFIGFGTFSTAERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFK 84
          R   T + +K+   RV  FK
Sbjct: 61 RVPSTGKTIKVPATRVAKFK 80


>gi|304569686|ref|YP_009985.2| DNA-binding protein HU [Desulfovibrio vulgaris str. Hildenborough]
          Length = 101

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 4   TITRSDLVKSISKEFGLSRK-DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           ++T+++LV+ I  + GL+ K  +   +      + D+   GE++  + F +F V  + +R
Sbjct: 10  SMTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAAR 69

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            GRN +T +E+ I   +VV F    +LK  +
Sbjct: 70  KGRNPRTGEEIVIPAGKVVKFTPGKLLKDAV 100


>gi|30250139|ref|NP_842209.1| histone-like DNA-binding protein [Nitrosomonas europaea ATCC
          19718]
 gi|30139246|emb|CAD86119.1| Bacterial histone-like DNA-binding protein [Nitrosomonas europaea
          ATCC 19718]
          Length = 90

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+  I++   L++  +   +    + I D+  + +++ +  F TF V ++ +R G
Sbjct: 1  MNKSDLIDVIAQSADLTKAQAGNALDGALSAIKDALGKNDSVTLVGFGTFKVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  E+KI   +V  F A   LK  +
Sbjct: 61 RNPRTGAEIKIKAAKVPKFTAGKALKDAV 89


>gi|300726153|ref|ZP_07059610.1| DNA-binding protein HU [Prevotella bryantii B14]
 gi|299776623|gb|EFI73176.1| DNA-binding protein HU [Prevotella bryantii B14]
          Length = 94

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAI-KISSFATFHVKQKGSRV 63
          + +++L+  ++++  L++ +S++ V  +   I D+   G+ +  I  F  F VKQ   R 
Sbjct: 1  MNKTELISKVAEQANLTKAESSKLVNAVLGAIADNLCEGDGLLAIPDFGRFQVKQVPERT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKAS 86
          G N  T +++ I     +VFKAS
Sbjct: 61 GINPSTKEKIVIPAHDKIVFKAS 83


>gi|58979365|gb|AAW83347.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979379|gb|AAW83354.1| DNA-binding protein HU [Campylobacter coli]
          Length = 96

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 43/80 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+T     + + I D   +G+++    F TF   ++ +R  
Sbjct: 1  MTKADFISQVAQTAGLTKKDATAATDAVISTITDVLAKGDSVSFIGFGTFSTTERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFK 84
          R   T + +K+   RV  FK
Sbjct: 61 RVPSTGKTIKVPATRVAKFK 80


>gi|58979373|gb|AAW83351.1| DNA-binding protein HU [Campylobacter coli]
          Length = 96

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 43/80 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+T     + + I D   +G+++    F TF   ++ +R  
Sbjct: 1  MTKADFISQVAQTAGLTKKDATAATDAVISTITDVLAKGDSVSFIGFGTFSTTERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFK 84
          R   T + +K+   RV  FK
Sbjct: 61 RVPSTGKTIKVPATRVAKFK 80


>gi|319407888|emb|CBI81540.1| integration host factor beta chain [Bartonella schoenbuchensis
          R1]
          Length = 92

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ I++    L ++D    V  +F EI  + + G+ I++  F  F VK + +R 
Sbjct: 1  MIKSELIQIIARYNPHLLQRDVENIVNAVFEEISTALINGDRIELRGFGAFAVKSRSARN 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FK    L+ R+
Sbjct: 61 GRNPRTGETVVVEKKWVPFFKTGKDLRDRL 90


>gi|218887884|ref|YP_002437205.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris str. 'Miyazaki F']
 gi|218758838|gb|ACL09737.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris str. 'Miyazaki F']
          Length = 91

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 5  ITRSDLVKSISKEFGLSRK-DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++LV+ I  + GL+ K  +   +      + D+   GE++  + F +F V ++ +R 
Sbjct: 1  MTKAELVEKIRAKAGLASKVQAEGALDATIAVLADALAAGESVTFTGFGSFKVTERAARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T +E+ I   +VV F    +LK
Sbjct: 61 GRNPRTGEEITIPSGKVVKFTPGKLLK 87


>gi|148552974|ref|YP_001260556.1| histone family protein DNA-binding protein [Sphingomonas
          wittichii RW1]
 gi|148498164|gb|ABQ66418.1| histone family protein DNA-binding protein [Sphingomonas
          wittichii RW1]
          Length = 90

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ ++++  G+++ D+++ V  +F+ I     +G+ +++  F TF V ++ +  G
Sbjct: 1  MNKQELIGTVAEATGMTKNDASKAVEAVFDSITTQLKKGDEVRLVGFGTFSVTKRKASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + +KI       FK    LK  +
Sbjct: 61 RNPRTGEPMKISASSQPKFKPGKGLKDAV 89


>gi|218258078|ref|ZP_03474505.1| hypothetical protein PRABACTJOHN_00158 [Parabacteroides johnsonii
          DSM 18315]
 gi|218225797|gb|EEC98447.1| hypothetical protein PRABACTJOHN_00158 [Parabacteroides johnsonii
          DSM 18315]
          Length = 91

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + RS L+  +SK+ GL +KD  R +  +   I      G+ I +  F +F  + + SR  
Sbjct: 1  MNRSQLINILSKKTGLDKKDVKRTIDEMQKLIVQEVKEGQRICLHGFGSFKPRFQSSRPA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN ++   V++ PR ++ FK +  L
Sbjct: 61 RNPKSGTAVQLSPRTIIHFKCAPHL 85


>gi|113461118|ref|YP_719186.1| integration host factor subunit beta [Haemophilus somnus 129PT]
 gi|170717700|ref|YP_001784773.1| integration host factor subunit beta [Haemophilus somnus 2336]
 gi|123031307|sp|Q0I390|IHFB_HAES1 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|189045038|sp|B0UUH4|IHFB_HAES2 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|112823161|gb|ABI25250.1| integration host factor, beta-subunit [Haemophilus somnus 129PT]
 gi|168825829|gb|ACA31200.1| integration host factor, beta subunit [Haemophilus somnus 2336]
          Length = 94

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++++ S    +  KD    V  +  ++  +   GE I+I  F +F +  + SR+
Sbjct: 1  MTKSELIENLASTNPNVPLKDIENAVKDILEQLSQALENGERIEIRGFGSFSLHFRQSRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++V +  + V  FKA   LK+R+
Sbjct: 61 GRNPKTGEKVDLSAKYVPHFKAGKELKERV 90


>gi|254491635|ref|ZP_05104814.1| DNA-binding protein HU [Methylophaga thiooxidans DMS010]
 gi|224463113|gb|EEF79383.1| DNA-binding protein HU [Methylophaga thiooxydans DMS010]
          Length = 95

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 51/89 (57%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          ++ + + +L+ +++    +S+  + + V  + + +  +  +G+ + +  F TF V+++ +
Sbjct: 3  NQAVNKYELIDAVAAAADISKAKAAQAVDGVTSAVTKALSKGDQVTLVGFGTFSVRERAA 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          R GRN +T +E+KI   ++  FKA   LK
Sbjct: 63 RTGRNPRTGEEIKIAAAKIPAFKAGKALK 91


>gi|59713004|ref|YP_205780.1| HU, DNA-binding transcriptional regulator, alpha subunit [Vibrio
          fischeri ES114]
 gi|197336341|ref|YP_002157189.1| DNA-binding protein HU-beta [Vibrio fischeri MJ11]
 gi|59481105|gb|AAW86892.1| HU, DNA-binding transcriptional regulator, alpha subunit [Vibrio
          fischeri ES114]
 gi|197317831|gb|ACH67278.1| DNA-binding protein HU-beta [Vibrio fischeri MJ11]
          Length = 90

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+ +I+++  LS+  +   +      +  +   GE +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDAIAEKADLSKAQAKAALEATLEGVTGALKDGEQVQLIGFGTFKVNNRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E++I   +V  F A   LK+ +
Sbjct: 61 RNPKTGEEIQIKAAKVPAFVAGKALKESV 89


>gi|194336405|ref|YP_002018199.1| histone family protein DNA-binding protein [Pelodictyon
          phaeoclathratiforme BU-1]
 gi|194308882|gb|ACF43582.1| histone family protein DNA-binding protein [Pelodictyon
          phaeoclathratiforme BU-1]
          Length = 91

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          ++++ LV+ I+ +  LS+ D+ R +      + DS   G  + ++ F TF +  +  R G
Sbjct: 1  MSKNALVEKIADQAQLSKIDADRALKAFVTIVSDSLKNGVDVPLAGFGTFTIVDRAEREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T + + I  ++VV FK    LK  I
Sbjct: 61 RNPMTGEAITIAAKKVVKFKPGKALKMDI 89


>gi|332969967|gb|EGK08967.1| DNA-binding protein HU-beta [Kingella kingae ATCC 23330]
          Length = 122

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 2/103 (1%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGS 61
           K + +S+L+ +I+ E GL++ D+++ +   F E+  + ++ G++I +  F TF V  +  
Sbjct: 21  KIMNKSELIDAIATESGLTKTDASKALDA-FTEVVKNTLKTGDSITLVGFGTFKVADRAE 79

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           R G N +T + + I   RV  F     LK  ++ +    K  K
Sbjct: 80  RQGLNPKTKEAITIPAARVPKFTPGKALKDVLVAEQPAAKKKK 122


>gi|260889058|ref|ZP_05900321.1| DNA-binding protein HU [Leptotrichia hofstadii F0254]
 gi|260861118|gb|EEX75618.1| DNA-binding protein HU [Leptotrichia hofstadii F0254]
          Length = 99

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 50/92 (54%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +++ + V + +K  G ++K +   V        +  V+GE+I+   + TF VK++ +R 
Sbjct: 6  AMSKKEFVDAYAKATGETKKRAEELVNAFLGTAEEFLVKGESIQFVGWGTFEVKERAARE 65

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN  T + +KID ++VV FK    L  ++ D
Sbjct: 66 GRNPSTGKPIKIDAKKVVKFKVGKKLADKVAD 97


>gi|220922182|ref|YP_002497483.1| integration host factor subunit beta [Methylobacterium nodulans
          ORS 2060]
 gi|219946788|gb|ACL57180.1| integration host factor, beta subunit [Methylobacterium nodulans
          ORS 2060]
          Length = 106

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV  I+++   L ++D    V  + + I D+  RG+ +++  F  F VK++ +R 
Sbjct: 1  MIKSELVLKIAEQNPHLYQRDVENIVNAILDTIADALARGDRVELRGFGAFSVKRREARR 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  + + VFK    ++ R+
Sbjct: 61 GRNPRTGAAVAVAEKAIPVFKTGKEMRLRL 90


>gi|197294415|ref|YP_001798956.1| nucleoid DNA-binding protein [Candidatus Phytoplasma
          australiense]
 gi|197294469|ref|YP_001799010.1| nucleoid DNA-binding protein [Candidatus Phytoplasma
          australiense]
 gi|171853742|emb|CAM11665.1| Bacterial nucleoid DNA-binding protein [Candidatus Phytoplasma
          australiense]
 gi|171853796|emb|CAM11731.1| Bacterial nucleoid DNA-binding protein [Candidatus Phytoplasma
          australiense]
          Length = 95

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 3/93 (3%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISSFATFHVKQKGSR 62
          +T+ +L+++I+K   +S   +  F    F ++   A+    E I   S  TF ++ + +R
Sbjct: 1  MTKKELIRAIAKRQNISIVQTEEFYNA-FEQVLFEAIAANDEVILSPSIGTFALRHRQAR 59

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +GRN QT ++++I  +  VVF+ S  +K+ + D
Sbjct: 60 LGRNPQTGEQIEIPEKTAVVFRPSRTIKEEVRD 92


>gi|118579611|ref|YP_900861.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
 gi|118502321|gb|ABK98803.1| bacterial nucleoid protein Hbs [Pelobacter propionicus DSM 2379]
          Length = 92

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/86 (22%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L+ ++++E GL + D+ + ++   + + ++  +G+ + +  F TF   ++ +R G
Sbjct: 1  MTKAELISAVAEESGLKKVDAEKALSAFISTVTEALKQGDKLSLVGFGTFCTSKRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          +N QT +++ I    +  F+    LK
Sbjct: 61 QNPQTGKKINIPAATIPKFRPGKTLK 86


>gi|186477811|ref|YP_001859281.1| histone family protein DNA-binding protein [Burkholderia phymatum
          STM815]
 gi|184194270|gb|ACC72235.1| histone family protein DNA-binding protein [Burkholderia phymatum
          STM815]
          Length = 92

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++ + G S+  +   + TL   I  +  +G+A+++  F +F   ++ +R G
Sbjct: 1  MNKQELIDAVAGQTGASKAQTGETLDTLLEVIKKAVAKGDAVQLIGFGSFGSGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + +KI   + V F A    K
Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFK 86


>gi|225847908|ref|YP_002728071.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643424|gb|ACN98474.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 91

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 37/58 (63%)

Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          + ++  +GE + I  F  F+++++  R GRN +T +E+KI  R+VV F A+  LK+ +
Sbjct: 32 VVEAISKGERVAIPGFGIFNIRERKERKGRNPRTGKEIKIPARKVVAFTAAKALKEAV 89


>gi|150026047|ref|YP_001296873.1| histone-like DNA-binding protein HU-beta [Flavobacterium
          psychrophilum JIP02/86]
 gi|39653976|gb|AAR29587.1| Fp91 [Flavobacterium psychrophilum]
 gi|149772588|emb|CAL44071.1| Histone-like bacterial DNA-binding protein HU-beta
          [Flavobacterium psychrophilum JIP02/86]
          Length = 91

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+ ++S   G+++  +   + +    I ++  +G  + +  F ++ V  + +R G
Sbjct: 1  MNKSDLIDAMSASAGITKAAAKLALESFLGNIEETLQKGGRVSLVGFGSWSVSNRAARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT   +KI  + VV FKA + L+
Sbjct: 61 RNPQTGATIKIAAKNVVKFKAGAELE 86


>gi|295394908|ref|ZP_06805121.1| DNA-binding protein HU [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972241|gb|EFG48103.1| DNA-binding protein HU [Brevibacterium mcbrellneri ATCC 49030]
          Length = 94

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          RS+LV  ++++ GL++K  +  +  +F+   D   +GE + +  + +    ++ +R GRN
Sbjct: 5  RSELVAEVAEKTGLTQKQVSDVLDGVFDSFADVVSKGEKLTVPGWLSVERTERAARKGRN 64

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E++I     V   A S LK
Sbjct: 65 PQTGEEIQIAAGYSVKLSAGSKLK 88


>gi|256830730|ref|YP_003159458.1| histone family protein DNA-binding protein [Desulfomicrobium
          baculatum DSM 4028]
 gi|256579906|gb|ACU91042.1| histone family protein DNA-binding protein [Desulfomicrobium
          baculatum DSM 4028]
          Length = 97

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 53/90 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++++V SI ++   +R +    V T+ + + ++  +  ++ IS F  F   +K +R 
Sbjct: 5  TLTKAEIVDSIYEKSERNRAEVKAQVETMLDIMKEAVKKDHSLLISGFGKFEAYEKDARK 64

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QT++ + +  R+VVVF+ S  L+  +
Sbjct: 65 GRNPQTSESIILSERKVVVFRISRKLRAEL 94


>gi|91785774|ref|YP_560980.1| DNA-binding protein HU-alpha [Burkholderia xenovorans LB400]
 gi|170694282|ref|ZP_02885436.1| histone family protein DNA-binding protein [Burkholderia graminis
          C4D1M]
 gi|187925902|ref|YP_001897544.1| histone family protein DNA-binding protein [Burkholderia
          phytofirmans PsJN]
 gi|209515815|ref|ZP_03264678.1| histone family protein DNA-binding protein [Burkholderia sp.
          H160]
 gi|296157574|ref|ZP_06840409.1| histone family protein DNA-binding protein [Burkholderia sp.
          Ch1-1]
 gi|307731496|ref|YP_003908720.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1003]
 gi|323527878|ref|YP_004230031.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1001]
 gi|91689728|gb|ABE32928.1| DNA-binding protein HU-alpha [Burkholderia xenovorans LB400]
 gi|170140705|gb|EDT08879.1| histone family protein DNA-binding protein [Burkholderia graminis
          C4D1M]
 gi|187717096|gb|ACD18320.1| histone family protein DNA-binding protein [Burkholderia
          phytofirmans PsJN]
 gi|209503842|gb|EEA03835.1| histone family protein DNA-binding protein [Burkholderia sp.
          H160]
 gi|295892346|gb|EFG72129.1| histone family protein DNA-binding protein [Burkholderia sp.
          Ch1-1]
 gi|307586031|gb|ADN59429.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1003]
 gi|323384880|gb|ADX56971.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1001]
          Length = 92

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++ + G S+  +   + TL   I  S  +G+A+++  F +F   ++ +R G
Sbjct: 1  MNKQELIDAVAGQTGASKAQTGETLDTLLEVIKKSVSKGDAVQLIGFGSFGSGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + +KI   + V F A    K
Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFK 86


>gi|15643036|ref|NP_228079.1| DNA-binding protein, HU [Thermotoga maritima MSB8]
 gi|6226592|sp|P36206|DBH_THEMA RecName: Full=DNA-binding protein HU
 gi|4980764|gb|AAD35355.1|AE001709_1 DNA-binding protein, HU [Thermotoga maritima MSB8]
          Length = 90

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +L+  ++K+ G  +KD    + T+   I ++  +GE ++I  F +F V++  +R G
Sbjct: 1  MTKKELIDRVAKKAGAKKKDVKLILDTILETITEALAKGEKVQIVGFGSFEVRKAAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N QT + + I  R+V  FK    LK+++
Sbjct: 61 VNPQTRKPITIPERKVPKFKPGKALKEKV 89


>gi|289423339|ref|ZP_06425147.1| DNA-binding protein HU [Peptostreptococcus anaerobius 653-L]
 gi|289156270|gb|EFD04927.1| DNA-binding protein HU [Peptostreptococcus anaerobius 653-L]
          Length = 92

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  I+++  L++K+S   +    + + ++ V GE +++  F TF  +++ +R G
Sbjct: 1  MNKAELVAKIAEKSNLTKKESELALNAFMDVVEETLVAGEKVQLVGFGTFETRERAARSG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRI 93
          RN +   E ++I   +  VFKA   LK+ +
Sbjct: 61 RNPRKPDETIEIPASKAPVFKAGKGLKELV 90


>gi|282896625|ref|ZP_06304640.1| Histone-like protein DNA-binding protein [Raphidiopsis brookii
          D9]
 gi|281198495|gb|EFA73381.1| Histone-like protein DNA-binding protein [Raphidiopsis brookii
          D9]
          Length = 94

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/89 (20%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV ++S++  +++K +   ++   + I ++   G+ + +  F +F  + + +R G
Sbjct: 1  MNKAELVDAVSEKASVTKKQADAVISAAIDTIIEAVASGDKVTLVGFGSFESRDRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +TN++++I   +V  F A  + ++++
Sbjct: 61 RNPKTNEKMEIPATKVPAFSAGKLFREKV 89


>gi|114707247|ref|ZP_01440145.1| histone-like protein [Fulvimarina pelagi HTCC2506]
 gi|114537443|gb|EAU40569.1| histone-like protein [Fulvimarina pelagi HTCC2506]
          Length = 91

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV ++S++  LS++ +T  V  +F  I  +   G  I++  F TF V  + +  G
Sbjct: 1  MNKNELVSAVSEKADLSKQQATAAVDAVFGTIEKTLADGGDIRLVGFGTFAVTHRNASKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T  EV I  R V  F     LK  +
Sbjct: 61 RNPSTGAEVDIPARNVPKFTPGKGLKDSV 89


>gi|34498500|ref|NP_902715.1| integration host factor beta-subunit [Chromobacterium violaceum
          ATCC 12472]
 gi|81711737|sp|Q7NTK9|IHFB_CHRVO RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|34104355|gb|AAQ60714.1| integration host factor beta-subunit [Chromobacterium violaceum
          ATCC 12472]
          Length = 104

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 5/94 (5%)

Query: 5  ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          +T+S+L+  +S+        L  KD+   V T+ + + ++  +G  I+I  F +F +  +
Sbjct: 1  MTKSELIARLSERLAERNSQLVYKDAELAVKTILDAMANNLAQGSRIEIRGFGSFDLNYR 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            RVGRN ++   V +  + V  FKA   L++R+
Sbjct: 61 PPRVGRNPKSGASVSVPEKYVPHFKAGKELRERV 94


>gi|15837792|ref|NP_298480.1| histone-like protein [Xylella fastidiosa 9a5c]
 gi|14194631|sp|Q9PE38|DBH_XYLFA RecName: Full=DNA-binding protein HU
 gi|9106160|gb|AAF84000.1|AE003953_4 histone-like protein [Xylella fastidiosa 9a5c]
          Length = 94

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++    LS+ ++ R +  + NEI ++  +G+++ +  F TF V+ +  R G
Sbjct: 1  MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKKGDSVTLVGFGTFQVRPRAERPG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN ++ + + I       FK    LK  +
Sbjct: 61 RNPKSGELIMIAASNNPSFKPGKALKDAV 89


>gi|254361238|ref|ZP_04977381.1| integration host factor beta subunit [Mannheimia haemolytica
          PHL213]
 gi|261492539|ref|ZP_05989092.1| integration host factor, beta subunit [Mannheimia haemolytica
          serotype A2 str. BOVINE]
 gi|261495208|ref|ZP_05991670.1| integration host factor, beta subunit [Mannheimia haemolytica
          serotype A2 str. OVINE]
 gi|3334237|sp|P95519|IHFB_PASHA RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|1842239|gb|AAC44846.1| integration host factor Beta subunit [Mannheimia haemolytica]
 gi|153092734|gb|EDN73777.1| integration host factor beta subunit [Mannheimia haemolytica
          PHL213]
 gi|261309133|gb|EEY10374.1| integration host factor, beta subunit [Mannheimia haemolytica
          serotype A2 str. OVINE]
 gi|261311698|gb|EEY12848.1| integration host factor, beta subunit [Mannheimia haemolytica
          serotype A2 str. BOVINE]
          Length = 93

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++S+ SK   L  K     V  L  ++  +   GE I++  F +F +  +  R+
Sbjct: 1  MTKSELIESLASKNPSLPIKMVEHCVKELLEQLTATLEEGERIEVRGFGSFSLHYRQPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  + V  FKA   LK+R+
Sbjct: 61 GRNPKTGESVLLGAKYVPHFKAGKDLKERV 90


>gi|329847169|ref|ZP_08262197.1| integration host factor, beta subunit [Asticcacaulis biprosthecum
          C19]
 gi|328842232|gb|EGF91801.1| integration host factor, beta subunit [Asticcacaulis biprosthecum
          C19]
          Length = 99

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ ++ E+  L++KD  R V  +   +  +  +G  +++  F    V+ + +R 
Sbjct: 1  MLKSELIERLASEYPHLTQKDVERAVNLILESMISTLEKGGRVELRGFGALSVRSRPARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  + V  FK+   L++R+
Sbjct: 61 GRNPRTGEAVNVPAKHVPFFKSGKELRERL 90


>gi|240949275|ref|ZP_04753619.1| integration host factor subunit beta [Actinobacillus minor NM305]
 gi|240296391|gb|EER47035.1| integration host factor subunit beta [Actinobacillus minor NM305]
          Length = 93

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 38/65 (58%)

Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88
          V  +  +I  S   GE I+I  F +F +  + +RVGRN +T + VK++ + V  FKA   
Sbjct: 26 VKEILEKIMFSLENGERIEIRGFGSFSLHHRDARVGRNPKTGESVKLEAKSVPHFKAGKE 85

Query: 89 LKKRI 93
          LK+R+
Sbjct: 86 LKERV 90


>gi|218282536|ref|ZP_03488786.1| hypothetical protein EUBIFOR_01368 [Eubacterium biforme DSM 3989]
 gi|218216523|gb|EEC90061.1| hypothetical protein EUBIFOR_01368 [Eubacterium biforme DSM 3989]
          Length = 94

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ D++ +I+++  L++KD T  V     +I +    G+ + ++ F  F + ++ +R G
Sbjct: 4  LTKKDIISNIAEDSHLTKKDITEVVDLALTQIFEGLSEGKTVDLAGFGKFEITERKAREG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T ++++I+  + V FK +  LK+ +
Sbjct: 64 INPLTKEKIQIEASKSVKFKIAKALKEAV 92


>gi|197118442|ref|YP_002138869.1| integration host factor subunit beta [Geobacter bemidjiensis Bem]
 gi|197087802|gb|ACH39073.1| integration host factor, beta subunit [Geobacter bemidjiensis
          Bem]
          Length = 91

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++S++ +  LS K +   V  +F  + D+ + G+ I+I    +F VK+  +  G
Sbjct: 1  MNKSELIESLAAKKTLSFKKAEEVVNAVFASMTDALLSGDRIEIRGVGSFVVKEYDAYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + +  +++  FK    LK+++
Sbjct: 61 RNPKTGESISVKAKKLPFFKVGKELKEKV 89


>gi|120597447|ref|YP_962021.1| histone family protein DNA-binding protein [Shewanella sp.
          W3-18-1]
 gi|126172756|ref|YP_001048905.1| histone family protein DNA-binding protein [Shewanella baltica
          OS155]
 gi|146294412|ref|YP_001184836.1| histone family protein DNA-binding protein [Shewanella
          putrefaciens CN-32]
 gi|153002323|ref|YP_001368004.1| histone family protein DNA-binding protein [Shewanella baltica
          OS185]
 gi|160877047|ref|YP_001556363.1| histone family protein DNA-binding protein [Shewanella baltica
          OS195]
 gi|217974911|ref|YP_002359662.1| histone family protein DNA-binding protein [Shewanella baltica
          OS223]
 gi|304410864|ref|ZP_07392481.1| histone family protein DNA-binding protein [Shewanella baltica
          OS183]
 gi|307304965|ref|ZP_07584715.1| histone family protein DNA-binding protein [Shewanella baltica
          BA175]
 gi|120557540|gb|ABM23467.1| histone family protein DNA-binding protein [Shewanella sp.
          W3-18-1]
 gi|125995961|gb|ABN60036.1| histone family protein DNA-binding protein [Shewanella baltica
          OS155]
 gi|145566102|gb|ABP77037.1| histone family protein DNA-binding protein [Shewanella
          putrefaciens CN-32]
 gi|151366941|gb|ABS09941.1| histone family protein DNA-binding protein [Shewanella baltica
          OS185]
 gi|160862569|gb|ABX51103.1| histone family protein DNA-binding protein [Shewanella baltica
          OS195]
 gi|217500046|gb|ACK48239.1| histone family protein DNA-binding protein [Shewanella baltica
          OS223]
 gi|304350761|gb|EFM15162.1| histone family protein DNA-binding protein [Shewanella baltica
          OS183]
 gi|306912367|gb|EFN42791.1| histone family protein DNA-binding protein [Shewanella baltica
          BA175]
 gi|315269251|gb|ADT96104.1| histone family protein DNA-binding protein [Shewanella baltica
          OS678]
 gi|319427766|gb|ADV55840.1| histone family protein DNA-binding protein [Shewanella
          putrefaciens 200]
          Length = 90

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I++   L++ ++ R + +    I +S   G+ I I  F +F    + +R G
Sbjct: 1  MNKTELIAKIAENADLTKVEAARALKSFEAAITESMKNGDKISIVGFGSFETATRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I    V  FKA   L+
Sbjct: 61 RNPQTGKEIQIAEATVPKFKAGKTLR 86


>gi|163849633|ref|YP_001637676.1| integration host factor, beta subunit [Methylobacterium
          extorquens PA1]
 gi|218528183|ref|YP_002418999.1| integration host factor subunit beta [Methylobacterium
          chloromethanicum CM4]
 gi|254558707|ref|YP_003065802.1| integration host factor [Methylobacterium extorquens DM4]
 gi|163661238|gb|ABY28605.1| integration host factor, beta subunit [Methylobacterium
          extorquens PA1]
 gi|218520486|gb|ACK81071.1| integration host factor, beta subunit [Methylobacterium
          chloromethanicum CM4]
 gi|254265985|emb|CAX21735.1| integration host factor (IHF), beta subunit, site-specific
          recombination [Methylobacterium extorquens DM4]
          Length = 102

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV  I+++   L ++D    V  + + I D+  +G+ +++  F  F VK++ +R 
Sbjct: 1  MIKSELVLKIAEQNPHLYQRDVETLVNAILDTIADALAQGDRVELRGFGAFSVKRREARR 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  + + VFK    ++ R+
Sbjct: 61 GRNPRTGESVAVSEKAIPVFKTGKEMRLRL 90


>gi|116624250|ref|YP_826406.1| histone family protein DNA-binding protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116227412|gb|ABJ86121.1| histone family protein DNA-binding protein [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 108

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 46/86 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + + D++  +    G+++  +   V T+F  +  +  +G+ I++  F  F+VK + + +G
Sbjct: 20  LIKLDIINEVVNRTGITKTKAEMAVETVFESMKKALEQGDRIELRGFGVFNVKPRKTGIG 79

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILK 90
           RN +T  EV I P + V FK    L+
Sbjct: 80  RNPRTGAEVSIPPGKAVRFKPGKELQ 105


>gi|225848149|ref|YP_002728312.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643798|gb|ACN98848.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 100

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 8/97 (8%)

Query: 5  ITRSDLVKSISKE----FGLSRKDSTRFVTTLFNEICDSAV----RGEAIKISSFATFHV 56
          + R+D+V  I K+      L +++  + V   F+ I +        G+ + IS F TF +
Sbjct: 1  MKRADIVNMIHKDKDLNLSLDKREIHKIVNDTFDMISEYLTTDIKEGKKVMISGFGTFII 60

Query: 57 KQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          K++  +VGRN +T +E  I  R  + FKA   LKK+I
Sbjct: 61 KRRKGKVGRNPKTGEEKLIPDRLGISFKAGKELKKKI 97


>gi|172036192|ref|YP_001802693.1| putative histone-like DNA-binding protein [Cyanothece sp. ATCC
          51142]
 gi|171697646|gb|ACB50627.1| putative histone-like DNA-binding protein [Cyanothece sp. ATCC
          51142]
          Length = 93

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 49/93 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV  I+ +  L++K+++  +  L + I ++   G+ + +  F TF  + +  R G
Sbjct: 1  MNKEELVNMIAAKTRLTKKETSHILDALTDTIMETVADGDKVVLVGFGTFEPRDRKERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           N QT Q + I    V  F A  + K+++++ +
Sbjct: 61 MNPQTGQPITIPATTVPAFSAGKLFKEKVVESL 93


>gi|154507606|ref|ZP_02043248.1| hypothetical protein ACTODO_00086 [Actinomyces odontolyticus ATCC
          17982]
 gi|293189276|ref|ZP_06607999.1| DNA-binding protein HU [Actinomyces odontolyticus F0309]
 gi|153797240|gb|EDN79660.1| hypothetical protein ACTODO_00086 [Actinomyces odontolyticus ATCC
          17982]
 gi|292821739|gb|EFF80675.1| DNA-binding protein HU [Actinomyces odontolyticus F0309]
          Length = 93

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R++LV  I++   L++  +   +      + +S  +GEA+K++   +    ++ +R 
Sbjct: 2  SVNRTELVAQIAERADLTKAKADEALAAFQAVLVESLAKGEAVKVTGLLSVERVERAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+KI     V   A S LKK +
Sbjct: 62 GRNPRTGEEIKIPAGYGVKLSAGSTLKKAV 91


>gi|319942541|ref|ZP_08016851.1| integration host factor subunit beta [Sutterella wadsworthensis
          3_1_45B]
 gi|319803944|gb|EFW00862.1| integration host factor subunit beta [Sutterella wadsworthensis
          3_1_45B]
          Length = 102

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSR-KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          M  ++T+S+L+  +       R +D       + + +  + V G  I+I  F +F +K +
Sbjct: 1  MGNSMTKSELLAELYGRLPTFRERDCMDAAGVIIDTMSQTLVEGGRIEIRGFGSFGLKYR 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            RVGRN Q    V +  R  V FKA   L++R+
Sbjct: 61 PERVGRNPQDGSAVAVRARYTVFFKAGKDLRQRV 94


>gi|18311461|ref|NP_563395.1| DNA-binding protein HU [Clostridium perfringens str. 13]
 gi|110801137|ref|YP_697167.1| DNA-binding protein HU [Clostridium perfringens ATCC 13124]
 gi|110803022|ref|YP_699735.1| DNA-binding protein HU [Clostridium perfringens SM101]
 gi|168213403|ref|ZP_02639028.1| DNA-binding protein HU [Clostridium perfringens CPE str. F4969]
 gi|168217596|ref|ZP_02643221.1| DNA-binding protein HU [Clostridium perfringens NCTC 8239]
 gi|169343310|ref|ZP_02864320.1| DNA-binding protein HU [Clostridium perfringens C str. JGS1495]
 gi|18146145|dbj|BAB82185.1| probable DNA binding protein [Clostridium perfringens str. 13]
 gi|110675784|gb|ABG84771.1| DNA-binding protein HU [Clostridium perfringens ATCC 13124]
 gi|110683523|gb|ABG86893.1| DNA-binding protein HU [Clostridium perfringens SM101]
 gi|169298608|gb|EDS80689.1| DNA-binding protein HU [Clostridium perfringens C str. JGS1495]
 gi|170715074|gb|EDT27256.1| DNA-binding protein HU [Clostridium perfringens CPE str. F4969]
 gi|182380308|gb|EDT77787.1| DNA-binding protein HU [Clostridium perfringens NCTC 8239]
          Length = 91

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  L++KD+   +      + ++   G+ +++  F TF  + +  R G
Sbjct: 1  MNKAELITSMAEKSNLTKKDAELALKAFIESVSETLENGDKVQLVGFGTFETRVRAEREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + +KI      VFK    LK+R+
Sbjct: 61 RNPRTKEVIKIPASIAPVFKPGKELKERV 89


>gi|269121288|ref|YP_003309465.1| histone family protein DNA-binding protein [Sebaldella termitidis
          ATCC 33386]
 gi|268615166|gb|ACZ09534.1| histone family protein DNA-binding protein [Sebaldella termitidis
          ATCC 33386]
          Length = 92

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 41/71 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++ + +++ +K  G ++K S   V      +  S  +GE ++   + TF V+++ +R G
Sbjct: 1  MSKKEFIEAYAKATGETKKRSEELVNEFLGTVEKSLTKGETVQFVGWGTFGVQKRAARKG 60

Query: 65 RNLQTNQEVKI 75
          RN QT +E+KI
Sbjct: 61 RNPQTGKEIKI 71


>gi|188579482|ref|YP_001922927.1| integration host factor, beta subunit [Methylobacterium populi
          BJ001]
 gi|179342980|gb|ACB78392.1| integration host factor, beta subunit [Methylobacterium populi
          BJ001]
          Length = 102

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV  I+++   L ++D    V  + + I D+  +G+ +++  F  F VK++ +R 
Sbjct: 1  MIKSELVLKIAEQNPHLYQRDVETLVNAILDTIADALAQGDRVELRGFGAFSVKRREARR 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  + + VFK    ++ R+
Sbjct: 61 GRNPRTGESVSVSEKAIPVFKTGKEMRLRL 90


>gi|240136832|ref|YP_002961299.1| integration host factor (IHF), beta subunit, site-specific
          recombination [Methylobacterium extorquens AM1]
 gi|240006796|gb|ACS38022.1| integration host factor (IHF), beta subunit, site-specific
          recombination [Methylobacterium extorquens AM1]
          Length = 102

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV  I+++   L ++D    V  + + I D+  +G+ +++  F  F VK++ +R 
Sbjct: 1  MIKSELVLKIAEQNPHLYQRDVETLVNAILDTIADALAQGDRVELRGFGAFSVKRREARR 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  + + VFK    ++ R+
Sbjct: 61 GRNPRTGESVAVSEKAIPVFKTGKEMRLRL 90


>gi|237807858|ref|YP_002892298.1| histone family protein DNA-binding protein [Tolumonas auensis DSM
          9187]
 gi|237500119|gb|ACQ92712.1| histone family protein DNA-binding protein [Tolumonas auensis DSM
          9187]
          Length = 90

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S LV  IS+   +S+  + R +      + ++   G+ + +  F TF V+++ SR G
Sbjct: 1  MNKSQLVDKISESADISKAAAGRALDAFIEAVGEALKDGDQVSLVGFGTFAVRERASRSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I   +   FKA   LK  +
Sbjct: 61 RNPQTGATIEIAACKQPAFKAGKALKDSV 89


>gi|319403502|emb|CBI77081.1| integration host factor beta chain [Bartonella rochalimae ATCC
          BAA-1498]
 gi|319406416|emb|CBI80056.1| integration host factor beta chain [Bartonella sp. 1-1C]
          Length = 92

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D+   V+ +F +I  +   G+ +++  F  F +K + +R 
Sbjct: 1  MVKSELVQIIARHNPHLMQRDAENVVSAIFEKISAALANGQRVELRGFGAFSIKTRSARN 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + V  FK    L+ R+
Sbjct: 61 GRNPRTGETVMVEEKWVPFFKTGKDLRDRL 90


>gi|315606150|ref|ZP_07881178.1| DNA-binding protein HU [Actinomyces sp. oral taxon 180 str.
          F0310]
 gi|315312108|gb|EFU60197.1| DNA-binding protein HU [Actinomyces sp. oral taxon 180 str.
          F0310]
          Length = 93

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R++LV  I++   L++  +   +      + +S  +GEA+K++   +    ++ +R 
Sbjct: 2  SVNRTELVAQIAERADLTKAKADEALAAFQAVLVESLAKGEAVKVTGLLSVERVERAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+KI     V   A S LKK +
Sbjct: 62 GRNPRTGEEIKIPAGYGVKLSAGSTLKKAV 91


>gi|242281191|ref|YP_002993320.1| histone family protein DNA-binding protein [Desulfovibrio
          salexigens DSM 2638]
 gi|242124085|gb|ACS81781.1| histone family protein DNA-binding protein [Desulfovibrio
          salexigens DSM 2638]
          Length = 97

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 46/83 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++ +V  I ++   +R +    V ++ + +  +  +  A+ IS F  F    K +R 
Sbjct: 6  TLTKASVVDYIYEKTDRNRAEIKELVESILDIMKQAVKKDHAMLISGFGKFEAYDKNARK 65

Query: 64 GRNLQTNQEVKIDPRRVVVFKAS 86
          GRN QTN+ + +  R+VVVF+ S
Sbjct: 66 GRNPQTNEAITLPARKVVVFRLS 88


>gi|320539744|ref|ZP_08039407.1| putative HU, DNA-binding transcriptional regulator, alpha subunit
          [Serratia symbiotica str. Tucson]
 gi|320030209|gb|EFW12225.1| putative HU, DNA-binding transcriptional regulator, alpha subunit
          [Serratia symbiotica str. Tucson]
          Length = 90

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKAQAKLALESTLVAITESLKEGDAVQLVGFGTFKVNHRSERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89


>gi|302878691|ref|YP_003847255.1| integration host factor, beta subunit [Gallionella
          capsiferriformans ES-2]
 gi|302581480|gb|ADL55491.1| integration host factor, beta subunit [Gallionella
          capsiferriformans ES-2]
          Length = 97

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRS+L+  ++ +F  L+  D    V T+ +E+  +  RG  I+I  F +F +  +  R 
Sbjct: 1  MTRSELIAQLAAKFPQLTNSDIDMAVRTILDEMSRTLARGNRIEIRGFGSFGLNHRPPRK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++   V +  + V  FK    L++R+
Sbjct: 61 GRNPKSGVNVMVPAKYVPHFKTGKELRERV 90


>gi|291279359|ref|YP_003496194.1| DNA-binding protein HU [Deferribacter desulfuricans SSM1]
 gi|290754061|dbj|BAI80438.1| DNA-binding protein HU [Deferribacter desulfuricans SSM1]
          Length = 90

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L++ I+ + GL + ++ R +      + ++   G+ + +  F TF V ++  R G
Sbjct: 1  MNKKELIEKIASKAGLKKSEAERALAAFEEAVIEALKAGDKVTLVGFGTFSVSERKERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+ I   +   F A  +LK
Sbjct: 61 RNPQTGEEIIIPATKTPKFSAGKLLK 86


>gi|161598603|ref|YP_001573818.1| small DNA-binding protein [Bacillus thuringiensis serovar
          israelensis]
 gi|228905297|ref|ZP_04069279.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222]
 gi|21685470|emb|CAD30132.1| small DNA-binding protein (bacterial histone-like family)
          [Bacillus thuringiensis serovar israelensis]
 gi|228854334|gb|EEM99010.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222]
          Length = 92

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K ++ +  L +  ++  V  +   I  +   G+ +++  F +F VK++ +R G
Sbjct: 1  MNKSELIKQVAIQSELKKPQASLAVDAVLESIQHALQNGDHVQLFGFGSFEVKERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T + + I   +   FKA   LK+ +
Sbjct: 61 RNPHTGEALTIPAGKTPAFKAGKALKEAV 89


>gi|120603250|ref|YP_967650.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris DP4]
 gi|46448590|gb|AAS95244.1| DNA-binding protein HU [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|120563479|gb|ABM29223.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris DP4]
          Length = 91

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRK-DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++LV+ I  + GL+ K  +   +      + D+   GE++  + F +F V  + +R 
Sbjct: 1  MTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I   +VV F    +LK  +
Sbjct: 61 GRNPRTGEEIVIPAGKVVKFTPGKLLKDAV 90


>gi|15677102|ref|NP_274254.1| DNA-binding protein HU-beta [Neisseria meningitidis MC58]
 gi|121634923|ref|YP_975168.1| putative DNA-binding protein [Neisseria meningitidis FAM18]
 gi|161870073|ref|YP_001599243.1| DNA-binding protein [Neisseria meningitidis 053442]
 gi|218768232|ref|YP_002342744.1| putative DNA-binding protein [Neisseria meningitidis Z2491]
 gi|254805009|ref|YP_003083230.1| DNA-binding protein [Neisseria meningitidis alpha14]
 gi|304387508|ref|ZP_07369697.1| DNA-binding protein HU-beta [Neisseria meningitidis ATCC 13091]
 gi|54036950|sp|P64389|DBHB_NEIMB RecName: Full=DNA-binding protein HU-beta
 gi|54041019|sp|P64388|DBHB_NEIMA RecName: Full=DNA-binding protein HU-beta
 gi|7226469|gb|AAF41611.1| DNA-binding protein HU-beta [Neisseria meningitidis MC58]
 gi|120866629|emb|CAM10380.1| putative DNA-binding protein [Neisseria meningitidis FAM18]
 gi|121052240|emb|CAM08565.1| putative DNA-binding protein [Neisseria meningitidis Z2491]
 gi|161595626|gb|ABX73286.1| DNA-binding protein [Neisseria meningitidis 053442]
 gi|254668551|emb|CBA06006.1| DNA-binding protein [Neisseria meningitidis alpha14]
 gi|254669519|emb|CBA03455.1| DNA-binding protein HU-beta [Neisseria meningitidis alpha153]
 gi|261392508|emb|CAX50059.1| DNA-binding protein HU [Neisseria meningitidis 8013]
 gi|304338395|gb|EFM04516.1| DNA-binding protein HU-beta [Neisseria meningitidis ATCC 13091]
 gi|308389323|gb|ADO31643.1| putative DNA-binding protein [Neisseria meningitidis alpha710]
 gi|316985087|gb|EFV64040.1| DNA-binding protein HU-beta [Neisseria meningitidis H44/76]
 gi|319410479|emb|CBY90840.1| DNA-binding protein HU-A [Neisseria meningitidis WUE 2594]
 gi|325128364|gb|EGC51248.1| DNA-binding protein HU-beta [Neisseria meningitidis N1568]
 gi|325132586|gb|EGC55279.1| DNA-binding protein HU-beta [Neisseria meningitidis M6190]
 gi|325134523|gb|EGC57168.1| DNA-binding protein HU-beta [Neisseria meningitidis M13399]
 gi|325136284|gb|EGC58892.1| DNA-binding protein HU-beta [Neisseria meningitidis M0579]
 gi|325138359|gb|EGC60928.1| DNA-binding protein HU-beta [Neisseria meningitidis ES14902]
 gi|325140540|gb|EGC63061.1| DNA-binding protein HU-beta [Neisseria meningitidis CU385]
 gi|325144626|gb|EGC66925.1| DNA-binding protein HU-beta [Neisseria meningitidis M01-240013]
 gi|325198363|gb|ADY93819.1| DNA-binding protein HU-beta [Neisseria meningitidis G2136]
 gi|325200140|gb|ADY95595.1| DNA-binding protein HU-beta [Neisseria meningitidis H44/76]
 gi|325202076|gb|ADY97530.1| DNA-binding protein HU-beta [Neisseria meningitidis M01-240149]
 gi|325204214|gb|ADY99667.1| DNA-binding protein HU-beta [Neisseria meningitidis M01-240355]
 gi|325205994|gb|ADZ01447.1| DNA-binding protein HU-beta [Neisseria meningitidis M04-240196]
 gi|325208170|gb|ADZ03622.1| DNA-binding protein HU-beta [Neisseria meningitidis NZ-05/33]
          Length = 89

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I++E  +S+  + + +    N +  +  +G+ + +  F TF+V ++  R G
Sbjct: 1  MNKSELIEAIAQEADISKAAAQKALDATTNAVTTALKQGDTVTLVGFGTFYVGERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + + I   +   F+A   LK
Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKALK 86


>gi|119488961|ref|ZP_01621896.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106]
 gi|119454917|gb|EAW36060.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106]
          Length = 98

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 45/92 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  LV+  + + G+++K +   V+ +   I D+   GE + +  F +F  + + +R G
Sbjct: 1  MNKEQLVQETAFKAGVTKKQADAIVSAICESIMDAVAEGEKVTLVGFGSFEARHRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN  T Q + I    V  F A    K+ + ++
Sbjct: 61 RNPSTGQPMTIPETTVPAFSAGKAFKEMVAEE 92


>gi|282899711|ref|ZP_06307675.1| Histone-like protein DNA-binding protein [Cylindrospermopsis
          raciborskii CS-505]
 gi|281195590|gb|EFA70523.1| Histone-like protein DNA-binding protein [Cylindrospermopsis
          raciborskii CS-505]
          Length = 94

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 18/89 (20%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +++++  +++K +   ++   + I ++   G+ + +  F +F  + + +R G
Sbjct: 1  MNKGELVDAVAEKANVTKKQADAVLSAAIDTIVEAVASGDKVTLVGFGSFESRDRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +TN++++I   RV  F A  + ++++
Sbjct: 61 RNPKTNEKMEIPATRVPAFSAGKLFREKV 89


>gi|298489847|ref|YP_003720024.1| histone family protein DNA-binding protein ['Nostoc azollae'
          0708]
 gi|298231765|gb|ADI62901.1| histone family protein DNA-binding protein ['Nostoc azollae'
          0708]
          Length = 94

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 18/89 (20%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +++++  +++K +   ++     I ++   G+ + +  F +F  +++ +R G
Sbjct: 1  MNKGELVDAVAEKASVTKKQADAVLSAAIETIIEAVASGDKVTLVGFGSFESRERKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +TN++++I   +V  F A  + ++R+
Sbjct: 61 RNPKTNEKMEIPATKVPAFSAGKLFRERV 89


>gi|329120185|ref|ZP_08248854.1| HU family DNA-binding protein [Neisseria bacilliformis ATCC
          BAA-1200]
 gi|327463337|gb|EGF09657.1| HU family DNA-binding protein [Neisseria bacilliformis ATCC
          BAA-1200]
          Length = 97

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +TI +++LVK  +    +S   + R +  L + +      G  + I+ F TF  + K  R
Sbjct: 5  QTIHKTELVKQAAALSDISTAAAARLIDNLLDTVKTHLRNGFKVSITDFGTFEAQSKPER 64

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN QT + + I     V FKA   LK  +
Sbjct: 65 SGRNPQTGEAITIAAHMAVKFKAGKALKDAV 95


>gi|269925821|ref|YP_003322444.1| histone family protein DNA-binding protein [Thermobaculum
          terrenum ATCC BAA-798]
 gi|269789481|gb|ACZ41622.1| histone family protein DNA-binding protein [Thermobaculum
          terrenum ATCC BAA-798]
          Length = 84

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 45/80 (56%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++L+  +++  G+++    +    + +EI  S  +GE + I  F TF V ++  R GRN
Sbjct: 4  KTELINQVAERTGMTKSQVQKVFEEMLSEIRSSLEKGEDVIIRGFGTFKVTERSPRKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKAS 86
           +T +E++I   + V F+ S
Sbjct: 64 PRTGEEIEIPGGKRVTFRMS 83


>gi|224025287|ref|ZP_03643653.1| hypothetical protein BACCOPRO_02026 [Bacteroides coprophilus DSM
          18228]
 gi|224018523|gb|EEF76521.1| hypothetical protein BACCOPRO_02026 [Bacteroides coprophilus DSM
          18228]
          Length = 93

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/92 (22%), Positives = 45/92 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I+ + GL ++   + V    + +  S + GE + +  F +F +K +  +  
Sbjct: 1  MTKADIVREIATQTGLEKQVVLQVVEGFMDSVKSSMINGEEVYLRGFGSFIIKHRAEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN+  N  + +    +  FK S     R+  D
Sbjct: 61 RNISRNTTIIVPAHNIPAFKPSKAFAGRMKSD 92


>gi|113968892|ref|YP_732685.1| histone family protein DNA-binding protein [Shewanella sp. MR-4]
 gi|113883576|gb|ABI37628.1| histone family protein DNA-binding protein [Shewanella sp. MR-4]
          Length = 90

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I++   +++ ++ R + +    I +S   G+ I I  F +F    + +R G
Sbjct: 1  MNKTELIAKIAENADITKAEAARALKSFEAAITESMKNGDKISIVGFGSFETSTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I    V  FKA   L+
Sbjct: 61 RNPQTGKEIQIAEATVPKFKAGKTLR 86


>gi|258593296|emb|CBE69635.1| DNA-binding protein HU-beta (NS1) (HU-1) [NC10 bacterium 'Dutch
          sediment']
          Length = 90

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  ++K+  +++K +   + ++   I DS  +G+ + +  F TF V ++ +R G
Sbjct: 1  MTKAELVDKVAKDACITKKAAESALASVTAGIRDSLKKGKKVTLVGFGTFSVARRAARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT   +KI   +   F+A   LK
Sbjct: 61 RNPQTGDIIKIKAAKTPRFRAGKALK 86


>gi|269102377|ref|ZP_06155074.1| integration host factor beta subunit [Photobacterium damselae
          subsp. damselae CIP 102761]
 gi|268162275|gb|EEZ40771.1| integration host factor beta subunit [Photobacterium damselae
          subsp. damselae CIP 102761]
          Length = 95

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + S++  LS K     +  +  ++  +  +GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLCSQQTHLSAKQVEDAIKEILEQMATTLEQGERIEIRGFGSFSLHFRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  +V++D + V  FK    L+ R+
Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRV 90


>gi|15639243|ref|NP_218692.1| DNA-binding protein II [Treponema pallidum subsp. pallidum str.
          Nichols]
 gi|189025485|ref|YP_001933257.1| DNA-binding protein II [Treponema pallidum subsp. pallidum SS14]
 gi|14194594|sp|O83278|DBH_TREPA RecName: Full=DNA-binding protein HU
 gi|3322519|gb|AAC65236.1| DNA-binding protein II [Treponema pallidum subsp. pallidum str.
          Nichols]
 gi|189018060|gb|ACD70678.1| DNA-binding protein II [Treponema pallidum subsp. pallidum SS14]
          Length = 105

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 4/94 (4%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          TRS +V ++  E  LSR+   R V +  + +  +  RGE +++  F  F  + + + VG+
Sbjct: 7  TRSFVVDALCDEVDLSRRHVARVVDSFVSVVTAALERGETVELRDFGVFESRVRKASVGK 66

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          +++T + V I    VVVF+ S    KR+   +RG
Sbjct: 67 SIKTGEVVSIPSHCVVVFRPS----KRLKSAVRG 96


>gi|257464686|ref|ZP_05629057.1| integration host factor subunit beta [Actinobacillus minor 202]
 gi|257450346|gb|EEV24389.1| integration host factor subunit beta [Actinobacillus minor 202]
          Length = 93

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 38/65 (58%)

Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88
          V  +  +I  S   GE I+I  F +F +  + +RVGRN +T + VK++ + V  FKA   
Sbjct: 26 VREILEKIMFSLENGERIEIRGFGSFSLHHRDARVGRNPKTGESVKLEAKSVPHFKAGKE 85

Query: 89 LKKRI 93
          LK+R+
Sbjct: 86 LKERV 90


>gi|254494814|ref|ZP_01051666.2| DNA-binding protein [Polaribacter sp. MED152]
 gi|213690396|gb|EAQ41094.2| DNA-binding protein [Polaribacter sp. MED152]
          Length = 117

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 47/85 (55%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +SDL+ +++ + G+S+  +   + +  + +  +   G+ + +  F TF V  + +R G
Sbjct: 28  MNKSDLIDAMAADAGISKVAAKAALESFTDNVTSALKGGDKVALVGFGTFSVSHRAARSG 87

Query: 65  RNLQTNQEVKIDPRRVVVFKASSIL 89
           RN QT + ++I  + V  FKA + L
Sbjct: 88  RNPQTGKTIQIAAKNVAKFKAGAGL 112


>gi|212696155|ref|ZP_03304283.1| hypothetical protein ANHYDRO_00691 [Anaerococcus hydrogenalis DSM
          7454]
 gi|325846494|ref|ZP_08169409.1| DNA-binding protein HU-beta [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|212676784|gb|EEB36391.1| hypothetical protein ANHYDRO_00691 [Anaerococcus hydrogenalis DSM
          7454]
 gi|325481252|gb|EGC84293.1| DNA-binding protein HU-beta [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
          Length = 93

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +IS++ GL + ++ R +      + +S  + E +++  F TF  + + +R G
Sbjct: 1  MNKSELLVNISEKSGLKKVEAERALNAFIETVTESLQKEEKVQLVGFGTFETRDRKAREG 60

Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93
          RN +   EV KI   +  VFKA   LK+ +
Sbjct: 61 RNPRKPDEVIKIPASKAPVFKAGKTLKEAV 90


>gi|220923813|ref|YP_002499115.1| hypothetical protein Mnod_3912 [Methylobacterium nodulans ORS
          2060]
 gi|219948420|gb|ACL58812.1| hypothetical protein Mnod_3912 [Methylobacterium nodulans ORS
          2060]
          Length = 66

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 3/50 (6%)

Query: 44 EAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          EA+++       V+ KG RVGRN +T  EV I PRRV+VFK S++LK  +
Sbjct: 9  EAVRLRLLV---VRDKGKRVGRNPKTGVEVAIAPRRVMVFKPSNVLKAHV 55


>gi|17547240|ref|NP_520642.1| DNA-binding protein HU-beta [Ralstonia solanacearum GMI1000]
 gi|187929862|ref|YP_001900349.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12J]
 gi|207725148|ref|YP_002255545.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum
          MolK2]
 gi|207742516|ref|YP_002258908.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum
          IPO1609]
 gi|241663971|ref|YP_002982331.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12D]
 gi|300690608|ref|YP_003751603.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Ralstonia
          solanacearum PSI07]
 gi|300703213|ref|YP_003744815.1| DNA-binding protein hu-beta, ns1 (hu-1), plays a role in DNA
          replication and in rpo translation [Ralstonia
          solanacearum CFBP2957]
 gi|309781438|ref|ZP_07676174.1| DNA-binding protein HU [Ralstonia sp. 5_7_47FAA]
 gi|17429542|emb|CAD16228.1| probable dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia
          solanacearum GMI1000]
 gi|187726752|gb|ACD27917.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12J]
 gi|206590380|emb|CAQ37341.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum
          MolK2]
 gi|206593908|emb|CAQ60835.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum
          IPO1609]
 gi|240865998|gb|ACS63659.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12D]
 gi|299065882|emb|CBJ37061.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Ralstonia
          solanacearum CMR15]
 gi|299070876|emb|CBJ42178.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Ralstonia
          solanacearum CFBP2957]
 gi|299077668|emb|CBJ50304.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Ralstonia
          solanacearum PSI07]
 gi|308919851|gb|EFP65512.1| DNA-binding protein HU [Ralstonia sp. 5_7_47FAA]
          Length = 94

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+S+LV +I+K+  LS   + R + +    I  +  +G  I +  F +F   ++ +R GR
Sbjct: 3  TKSELVAAIAKDAELSNAAAERALNSALENIKKTVAKGGTITLVGFGSFSSGKRAARTGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90
          N +T + +KI   + V F A    K
Sbjct: 63 NPRTGEAIKIPATKTVKFTAGKGFK 87


>gi|1093154|prf||2103146A HU protein
          Length = 94

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/89 (21%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +++++  +++K +   +T     I ++   G+ + +  F +F  +++ +R G
Sbjct: 1  MNKGELVDAVAEKASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +TN++++I   RV  F A  + ++++
Sbjct: 61 RNPKTNEKMEIPATRVPAFSAGKLEREKV 89


>gi|292492662|ref|YP_003528101.1| integration host factor subunit beta [Nitrosococcus halophilus
          Nc4]
 gi|291581257|gb|ADE15714.1| integration host factor, beta subunit [Nitrosococcus halophilus
          Nc4]
          Length = 96

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  LS +D    V TL   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLAQRQALLSYRDVELAVKTLLEVMSQALAQGERIEIRGFGSFSLHYRPPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  + V  FK    L++R+
Sbjct: 61 GRNPKTGDAVPLPSKYVPHFKPGKELRERV 90


>gi|170740732|ref|YP_001769387.1| integration host factor subunit beta [Methylobacterium sp. 4-46]
 gi|168195006|gb|ACA16953.1| integration host factor, beta subunit [Methylobacterium sp. 4-46]
          Length = 106

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV  I+++   L ++D    V  + + I D+  RG+ +++  F  F VK++ +R 
Sbjct: 1  MIKSELVLKIAEQNPHLYQRDVESIVNAILDTIADALARGDRVELRGFGAFSVKRREARR 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  + + VFK    ++ R+
Sbjct: 61 GRNPRTGAAVAVAEKAIPVFKTGKEMRLRL 90


>gi|209965676|ref|YP_002298591.1| DNA-binding protein HupB [Rhodospirillum centenum SW]
 gi|209959142|gb|ACI99778.1| DNA-binding protein HupB [Rhodospirillum centenum SW]
          Length = 91

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL +++++  G S+  + + V  +F+ I  +  +GE ++++ F TF V ++ +R G
Sbjct: 1  MQKADLAEAVAQATGASKAAAAKTVDAIFDAIQQALAKGEDVRLTGFGTFSVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I   +   F A   LK  +
Sbjct: 61 RNPQTGATIQIAASKQPKFTAGKALKDAV 89


>gi|311233014|gb|ADP85868.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris
           RCH1]
          Length = 132

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 4   TITRSDLVKSISKEFGLSRK-DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           ++T+++LV+ I  + GL+ K  +   +      + D+   GE++  + F +F V  + +R
Sbjct: 41  SMTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAAR 100

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILK 90
            GRN +T +E+ I   +VV F    +LK
Sbjct: 101 KGRNPRTGEEIVIPAGKVVKFTPGKLLK 128


>gi|323699317|ref|ZP_08111229.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          ND132]
 gi|323459249|gb|EGB15114.1| histone family protein DNA-binding protein [Desulfovibrio
          desulfuricans ND132]
          Length = 94

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 43/83 (51%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++ +V  I +    +R +    V  +   +  S  +  A+ IS F  F    K +R 
Sbjct: 3  TLTKAGIVDYIYERTDKNRAEIKDLVEIILEIMKKSIKKDHALLISGFGKFEAYDKRARK 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKAS 86
          GRN QT Q + + PR+VVVF+ S
Sbjct: 63 GRNPQTTQTITLPPRKVVVFRLS 85


>gi|313205318|ref|YP_004043975.1| bacterial nucleoid protein hbs [Paludibacter propionicigenes WB4]
 gi|312444634|gb|ADQ80990.1| bacterial nucleoid protein Hbs [Paludibacter propionicigenes WB4]
          Length = 90

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 40/69 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+ E GLS+ D+ + +  +   + D+ V G+ + +  F TF V ++ +R G
Sbjct: 1  MNKAELINAIAAEAGLSKADAKKALDAVVKSVSDALVAGDKVSLVGFGTFSVSERSARSG 60

Query: 65 RNLQTNQEV 73
           N  T Q +
Sbjct: 61 INPATKQPI 69


>gi|242278247|ref|YP_002990376.1| histone family protein DNA-binding protein [Desulfovibrio
          salexigens DSM 2638]
 gi|242121141|gb|ACS78837.1| histone family protein DNA-binding protein [Desulfovibrio
          salexigens DSM 2638]
          Length = 90

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 4/90 (4%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSKT+    LVK I ++  LS KD++  +  + + I D       + ++ F TF   ++ 
Sbjct: 1  MSKTV----LVKKIREKLELSAKDASAALDGVLSAIEDGLKEEGNVTLTGFGTFKTVERS 56

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          +R GRN QT + ++I   R V F     LK
Sbjct: 57 ARTGRNPQTGEAIQIPASRGVKFTPGKFLK 86


>gi|323498789|ref|ZP_08103775.1| nucleoid DNA-binding protein [Vibrio sinaloensis DSM 21326]
 gi|323316151|gb|EGA69176.1| nucleoid DNA-binding protein [Vibrio sinaloensis DSM 21326]
          Length = 90

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +    + + D+   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLDGVTDALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E++I    V  F A   LK  +
Sbjct: 61 RNPKTGEEIQIAAANVPAFVAGKALKDAV 89


>gi|240849695|ref|YP_002971083.1| integration host factor beta subunit [Bartonella grahamii as4aup]
 gi|240266818|gb|ACS50406.1| integration host factor beta subunit [Bartonella grahamii as4aup]
          Length = 92

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  +F EI  +   G  +++  F  F VK + +R 
Sbjct: 1  MVKSELVQIIARHNPHLFQRDVENIVNAIFEEISTALANGNRVELRGFGAFSVKSRSARN 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + +  FK    L+ R+
Sbjct: 61 GRNPRTGEAVSVEEKWIPFFKTGKDLRDRL 90


>gi|117919001|ref|YP_868193.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3]
 gi|117611333|gb|ABK46787.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3]
          Length = 90

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I++   +++ ++ R + +    I +S   G+ I I  F +F    + +R G
Sbjct: 1  MNKTELIAKIAENADITKAEAARALKSFEAAITESMKNGDKISIVGFGSFETTTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I    V  FKA   L+
Sbjct: 61 RNPQTGKEIQIAEATVPKFKAGKTLR 86


>gi|302879154|ref|YP_003847718.1| integration host factor, beta subunit [Gallionella
          capsiferriformans ES-2]
 gi|302581943|gb|ADL55954.1| integration host factor, beta subunit [Gallionella
          capsiferriformans ES-2]
          Length = 97

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRS+L+  ++ +F  L+  D    V T+ +E+  +  RG  I+I  F +F +  +  R 
Sbjct: 1  MTRSELIAQLAAKFPQLTNSDIDMAVRTILDEMSRTLARGNRIEIRGFGSFGLNHRPPRK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++   V +  + V  FK    L++R+
Sbjct: 61 GRNPKSGVNVMVPAKYVPHFKTGKELRERV 90


>gi|221135499|ref|ZP_03561802.1| HU family DNA-binding protein [Glaciecola sp. HTCC2999]
          Length = 90

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 44/86 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    + + ++ R +      +         +++  F TF V+++ +R G
Sbjct: 1  MNKSELIEKIADAADIKKVEAGRALDAFIEAVTAELKADGTVQLVGFGTFQVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT  E++I   +V  FKA   LK
Sbjct: 61 RNPQTGAEIQIAAAKVPAFKAGKALK 86


>gi|295098884|emb|CBK87973.1| Bacterial nucleoid DNA-binding protein [Eubacterium cylindroides
          T2-87]
          Length = 96

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 46/92 (50%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K + R  L + +     +S+KD++  +  +FNE+ +S      + IS F  F +  + 
Sbjct: 1  MAKFVNRESLAQVLCDNLNISKKDASYAIELIFNEMSESLASDGYVDISGFGKFEIFFRK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           R+G N  T + + I   ++  F+ S  LK +
Sbjct: 61 ERMGINPVTKERIMIPATKLPKFRPSQTLKNK 92


>gi|94676703|ref|YP_588518.1| DNA-binding protein HU-alpha [Baumannia cicadellinicola str. Hc
          (Homalodisca coagulata)]
 gi|94219853|gb|ABF14012.1| DNA-binding protein HU-alpha [Baumannia cicadellinicola str. Hc
          (Homalodisca coagulata)]
          Length = 94

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  IS +  LS+  +   + +    I +S   G+ +++  F TF +  +  R+G
Sbjct: 1  MNKTQLIDVISDKADLSKAQAKSALESTLAAITESLRGGDTVQLVGFGTFKINHRSERIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   L+K +
Sbjct: 61 RNPQTGKEIKIAAVNVPTFISGKTLRKAV 89


>gi|91790778|ref|YP_551729.1| histone-like DNA-binding protein [Polaromonas sp. JS666]
 gi|91700658|gb|ABE46831.1| histone-like DNA-binding protein [Polaromonas sp. JS666]
          Length = 103

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R++L+ +I+ E  LS+  + R +  L   I  +  +G+ +++  F TF   ++ +R G
Sbjct: 1  MNRAELIDTIAAETDLSKAATGRVLEVLLETIQKAVKKGDGVQLVGFGTFKSTKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          +N +T + VKI    V  F A +  K
Sbjct: 61 KNPRTGEAVKIPATTVPKFVAGAKFK 86


>gi|68250247|ref|YP_249359.1| integration host factor subunit beta [Haemophilus influenzae
          86-028NP]
 gi|148825815|ref|YP_001290568.1| integration host factor subunit beta [Haemophilus influenzae
          PittEE]
 gi|81335332|sp|Q4QJU8|IHFB_HAEI8 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|166918548|sp|A5UBN4|IHFB_HAEIE RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|68058446|gb|AAX88699.1| integration host factor beta-subunit [Haemophilus influenzae
          86-028NP]
 gi|148715975|gb|ABQ98185.1| integration host factor beta-subunit [Haemophilus influenzae
          PittEE]
 gi|309972959|gb|ADO96160.1| Integration host factor, beta-subunit [Haemophilus influenzae
          R2846]
          Length = 94

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ +S K+  LS K+    V  +   I  S   G+ +++  F +F +  +  R+
Sbjct: 1  MTKSELMEKLSAKQPTLSAKEIENMVKDILEFISQSLENGDRVEVRGFGSFSLHHRQPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  + V  FKA   LK R+
Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARV 90


>gi|257091641|ref|YP_003165284.1| hypothetical protein CAP2UW1_4713 [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
 gi|257048650|gb|ACV37837.1| hypothetical protein CAP2UW1_4713 [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
          Length = 103

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDL+  ++  F  L  KD+   V  + + I  +  +G+ ++I  F +F +  + +R 
Sbjct: 1  MTRSDLITVLASRFPSLVAKDAEIAVKEILDAIGIALAQGDRVEIRGFGSFRLNYRPART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V +  + V  F+AS  +++R+
Sbjct: 61 GRNPKSGEPVAVAEKYVPHFQASKEMRERV 90


>gi|251772980|gb|EES53537.1| histone family protein DNA-binding protein [Leptospirillum
          ferrodiazotrophum]
          Length = 96

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSRV 63
          +T+ +LV+ ++++F   R++  R +  LF E     +R G+ +++  F    V+ +  R 
Sbjct: 1  MTKGELVQKLARQFPGIRREDARIMIDLFLESMKEGLREGDTVELRDFGVLRVRTRSERK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
           RN +T   V +  ++V  FK S ILK
Sbjct: 61 ARNPRTGTSVVVGSKKVPYFKQSRILK 87


>gi|170720930|ref|YP_001748618.1| histone family protein DNA-binding protein [Pseudomonas putida
          W619]
 gi|169758933|gb|ACA72249.1| histone family protein DNA-binding protein [Pseudomonas putida
          W619]
          Length = 90

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  + + +  +   G+ + +  F TF VK++  R G
Sbjct: 1  MNKSELIDAIAASADIPKAVAGRALDAVIDSVTGALKAGDDVVLVGFGTFSVKERAERDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + +KI   +V  FKA   LK  +
Sbjct: 61 RNPQTGKTIKIAAAKVPGFKAGKGLKDAV 89


>gi|225010796|ref|ZP_03701264.1| histone family protein DNA-binding protein [Flavobacteria
          bacterium MS024-3C]
 gi|225005004|gb|EEG42958.1| histone family protein DNA-binding protein [Flavobacteria
          bacterium MS024-3C]
          Length = 90

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ + G+++  + + + +    +  S  +G  + +  F ++ V ++ +R G
Sbjct: 1  MNKTELIDAMAADAGITKAAAKKALESFLGNVEGSLKKGGRVSLVGFGSWSVSRRNARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   +KI  + VV FKA + L K +
Sbjct: 61 RNPQTGATIKIAAKNVVKFKAGAELSKSV 89


>gi|254456031|ref|ZP_05069460.1| integration host factor beta-subunit [Candidatus Pelagibacter sp.
          HTCC7211]
 gi|207083033|gb|EDZ60459.1| integration host factor beta-subunit [Candidatus Pelagibacter sp.
          HTCC7211]
          Length = 97

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 4  TITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           I +S L+K +S  +    +KD  +F   +  EI ++  RG+ +++  F  F    + +R
Sbjct: 2  AIVKSKLLKQLSDNYPNFLKKDLEKFTNIILGEIKNALKRGDRVELRGFGVFSTNIQKAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          + RN +T ++V    ++ + FK S  L K++ D+
Sbjct: 62 ISRNPKTGEKVNTPQKKTIHFKMSKDLFKKLNDE 95


>gi|198283163|ref|YP_002219484.1| histone family protein DNA-binding protein [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218666540|ref|YP_002425392.1| DNA-binding protein HU [Acidithiobacillus ferrooxidans ATCC
          23270]
 gi|198247684|gb|ACH83277.1| histone family protein DNA-binding protein [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218518753|gb|ACK79339.1| DNA-binding protein HU [Acidithiobacillus ferrooxidans ATCC
          23270]
          Length = 90

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I++E G++R  +   +  L   + D+   G+ + +  F +F V  + +R G
Sbjct: 1  MNKSELIEKIAEEAGVTRAAAGHTLDALVKVVTDALKAGDQVTLVGFGSFLVSSREARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T  E+ I   R   FKA   L+  +
Sbjct: 61 RNPATGAEIMIAASRTPKFKAGKALRDAV 89


>gi|144901346|emb|CAM78210.1| DNA-binding protein HU [Magnetospirillum gryphiswaldense MSR-1]
          Length = 92

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  +++  GL++ DS + V  +F  I  +   G+ +++  F +F V  + +  G
Sbjct: 1  MNKADLVSRVAELSGLTKADSEKAVDGVFEAITAALKGGDEVRLVGFGSFSVASRAASEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T ++++I   +   F A   LK+ +
Sbjct: 61 RNPRTGEKIQIPASKQPKFSAGKGLKEAV 89


>gi|149199234|ref|ZP_01876272.1| probable DNA-binding protein HU [Lentisphaera araneosa HTCC2155]
 gi|149137659|gb|EDM26074.1| probable DNA-binding protein HU [Lentisphaera araneosa HTCC2155]
          Length = 100

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ DLV  I+ E  L++++    V    + I +    G  +++ +F  F +K +  R+G
Sbjct: 1  MTKRDLVVRIADESKLNQQEVMNVVQKTLDYITNELAAGRNVELRNFGVFELKVRKQRIG 60

Query: 65 RNL-QTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  +   EV I  R VV FK+  ++K+++
Sbjct: 61 RNPNKPENEVPIPERVVVKFKSGKVMKEKV 90


>gi|291551159|emb|CBL27421.1| Bacterial nucleoid DNA-binding protein [Ruminococcus torques
          L2-14]
          Length = 90

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ + +++++  +S+KDS + +    + + +    G+ +++  F TF V ++ +R G
Sbjct: 1  MNKTEFIAAVAEKAEISKKDSEKALKAFVDVVTEQLKAGDKVQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I   +   FKA   LK  I
Sbjct: 61 RNPQTGKTMTIAACKAPKFKAGKALKDAI 89


>gi|256545177|ref|ZP_05472543.1| DNA-binding protein HU [Anaerococcus vaginalis ATCC 51170]
 gi|256399218|gb|EEU12829.1| DNA-binding protein HU [Anaerococcus vaginalis ATCC 51170]
          Length = 93

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +IS++ GL + ++ R +      + +S  + E +++  F TF  + + +R G
Sbjct: 1  MNKSELLVNISEKSGLKKVEAERALNAFIETVTESLKKEEKVQLVGFGTFETRDRKAREG 60

Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93
          RN +   EV KI   +  VFKA   LK+ +
Sbjct: 61 RNPRKPDEVIKIPASKAPVFKAGKTLKEAV 90


>gi|305666098|ref|YP_003862385.1| DNA-binding protein HU [Maribacter sp. HTCC2170]
 gi|88707532|gb|EAQ99775.1| DNA-binding protein HU [Maribacter sp. HTCC2170]
          Length = 96

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 43/85 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++V  IS + G+ + D    V +   E+  S   G+ + +  F +F +K +  + G
Sbjct: 1  MTKAEIVSKISDKLGIEKGDVQATVESFMEEVKTSLESGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  +KI    +  FK + + 
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVF 85


>gi|268686838|ref|ZP_06153700.1| integration host factor subunit beta [Neisseria gonorrhoeae
          SK-93-1035]
 gi|268627122|gb|EEZ59522.1| integration host factor subunit beta [Neisseria gonorrhoeae
          SK-93-1035]
          Length = 104

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 6/95 (6%)

Query: 5  ITRSDLVKSISKEFG------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          +T+S+L+  +++ F       L  KD    V  L + +  S  RG+ I+I  F +F +  
Sbjct: 1  MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKFLVDTMTRSLARGQRIEIRGFGSFDLNH 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          + +R+GRN +T + V++  + V  FK    L++R+
Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERV 95


>gi|260437765|ref|ZP_05791581.1| DNA-binding protein HU [Butyrivibrio crossotus DSM 2876]
 gi|292809787|gb|EFF68992.1| DNA-binding protein HU [Butyrivibrio crossotus DSM 2876]
          Length = 90

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L  +I+++  +S+KD+ + +      + +   +GE I++  F TF V ++ +R G
Sbjct: 1  MNKTELASAIAEKAEISKKDAEKALKAFTEVVAEELKKGEKIQLVGFGTFEVGERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N +T + +KI   +   FKA   LK
Sbjct: 61 INPRTRETIKIAAAKTPKFKAGKQLK 86


>gi|218679781|ref|ZP_03527678.1| integration host factor subunit beta [Rhizobium etli CIAT 894]
          Length = 85

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 38/74 (51%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
          L  +D    V  + +EI D+   G  +++  F  F VK + SR GRN +T   V ++ + 
Sbjct: 3  LYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRSGRNPRTGDTVFVEEKW 62

Query: 80 VVVFKASSILKKRI 93
          V  FK    L++R+
Sbjct: 63 VPFFKTGKELRERL 76


>gi|76798122|ref|ZP_00780376.1| HU like DNA-binding protein [Streptococcus agalactiae 18RS21]
 gi|76586530|gb|EAO63034.1| HU like DNA-binding protein [Streptococcus agalactiae 18RS21]
          Length = 85

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 45/81 (55%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          L+  +++   L++KDS   V  +F  + D    GE +++  F  F V+++ +R GRN QT
Sbjct: 1  LIAKVAEATELTKKDSAAAVDAVFAAVADYLAEGEKVQLIGFGNFEVRERAARKGRNPQT 60

Query: 70 NQEVKIDPRRVVVFKASSILK 90
            E++I   +V  FKA   LK
Sbjct: 61 GAEIEIAASKVPAFKAGKALK 81


>gi|322420779|ref|YP_004200002.1| histone family protein DNA-binding protein [Geobacter sp. M18]
 gi|320127166|gb|ADW14726.1| histone family protein DNA-binding protein [Geobacter sp. M18]
          Length = 93

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  + +  G L+RKDS   V+ +F+ + ++   G+ ++I  F +F ++ +  R 
Sbjct: 1  MTKSELIDKLVEVRGALTRKDSEAVVSMVFDAMSEALTNGDKVEIRGFGSFTIRDREPRE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN ++ + V I  ++   FK    L++R+
Sbjct: 61 ARNPKSGEIVSIPSKKTPFFKTGKDLRERV 90


>gi|118590043|ref|ZP_01547447.1| Histone-like DNA-binding protein [Stappia aggregata IAM 12614]
 gi|118437540|gb|EAV44177.1| Histone-like DNA-binding protein [Stappia aggregata IAM 12614]
          Length = 91

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++ GL++  +   V   F+ +  +   G+ ++I  F  F V ++ +  G
Sbjct: 1  MNKNDLIAAVAEKTGLTKAQAGEAVDATFDAVTQTLKSGDEVRIIGFGNFTVSERAATEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + ++I   +   FKA   LK  +
Sbjct: 61 RNPRTGETIQIPASKTPKFKAGKGLKDAV 89


>gi|27904545|ref|NP_777671.1| DNA-binding protein HU [Buchnera aphidicola str. Bp (Baizongia
          pistaciae)]
 gi|31340030|sp|Q89B22|DBH_BUCBP RecName: Full=DNA-binding protein HU
 gi|27903942|gb|AAO26776.1| DNA-binding protein HU [Buchnera aphidicola str. Bp (Baizongia
          pistaciae)]
          Length = 92

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 42/87 (48%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +S+L+  ISK+  LS+      +      I  S   G ++++  F TF V  + +R+GRN
Sbjct: 3  KSELINIISKKSNLSKIQIKNILEITLTAIIQSLKDGNSVQLVGFGTFKVNNRAARIGRN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT Q + I   +  VF +    K  I
Sbjct: 63 PQTGQTIHISATKTPVFISGKTFKTAI 89


>gi|282860074|ref|ZP_06269155.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010]
 gi|282587162|gb|EFB92386.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010]
          Length = 92

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 5/95 (5%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63
          +T++D++  I+ E G+S+KD +  V +  + I DS + + E + +  F +F VK +  + 
Sbjct: 1  MTKADIINEIATETGISKKDVSAVVESFMDAIKDSLLDKKENVYLRGFGSFIVKHRAEKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           RN+  N  + I       FK +    K  ++DM+
Sbjct: 61 ARNISKNTTITIPAHDFPSFKPA----KTFIEDMK 91


>gi|10955033|ref|NP_059689.1| hypothetical protein pTi_017 [Agrobacterium tumefaciens]
 gi|1163198|gb|AAC28112.1| hupT [Agrobacterium tumefaciens]
          Length = 92

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+ E  L++  +   V ++F +I D+A+ G    I SF  F +K    R GR
Sbjct: 3  TTNEIADKIAAEQNLTKAQAKTIVESVFKQITDAALAGAETSIPSFGKFKLKDTPEREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          N  T   +KI   + + F     L K + D + G
Sbjct: 63 NPATGATIKIAASKKLTF----TLGKAVKDALNG 92


>gi|291294582|ref|YP_003505980.1| histone family protein DNA-binding protein [Meiothermus ruber DSM
          1279]
 gi|290469541|gb|ADD26960.1| histone family protein DNA-binding protein [Meiothermus ruber DSM
          1279]
          Length = 100

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 44/85 (51%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DL+  ++   GL +KD+   V    +++ ++   G  ++++ F TF V+ + +R G    
Sbjct: 14 DLIDQVAATAGLKKKDAKAAVDAFLSKVEEALKAGNKVQLTGFGTFEVRSRKARTGVKPG 73

Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93
          T Q++KI   +   FK    LK+ +
Sbjct: 74 TTQKIKIPASKYPAFKPGKALKETV 98


>gi|146297905|ref|YP_001192496.1| histone family protein DNA-binding protein [Flavobacterium
          johnsoniae UW101]
 gi|146152323|gb|ABQ03177.1| histone family protein DNA-binding protein [Flavobacterium
          johnsoniae UW101]
          Length = 90

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+ + G+++  +   + +    +  +  +G  I +  F ++ V  + +R G
Sbjct: 1  MNKSELIDAIAADAGITKAAAKLALESFLGNVGTTLKKGGRISLVGFGSWSVSARAARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + +KI  + VV FKA + L+  +
Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGAELEGAV 89


>gi|319943162|ref|ZP_08017445.1| integration host factor beta subunit [Lautropia mirabilis ATCC
           51599]
 gi|319743704|gb|EFV96108.1| integration host factor beta subunit [Lautropia mirabilis ATCC
           51599]
          Length = 116

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 4   TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           T+T+S+L+  +++ F  L  KD+   V T+ + +  S      I+I  F TF +  + SR
Sbjct: 17  TMTKSELIAKLAERFPQLVAKDAEYAVRTILDAMARSLADRHRIEIRGFGTFALSHRHSR 76

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           +GRN ++ + V +  + V  FK    L++ +
Sbjct: 77  MGRNPKSGEPVPVPEKLVPHFKPGKQLRESV 107


>gi|210623292|ref|ZP_03293709.1| hypothetical protein CLOHIR_01659 [Clostridium hiranonis DSM
          13275]
 gi|210153693|gb|EEA84699.1| hypothetical protein CLOHIR_01659 [Clostridium hiranonis DSM
          13275]
          Length = 92

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  ++++  L++K++   +      + ++ V GE +++  F TF  + + +R G
Sbjct: 1  MNKAELVSKMAEKSELTKKEAEAALNAFMESVEEALVSGEKVQLVGFGTFETRDRAARQG 60

Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93
          RN +  +EV  I   +  VFKA   LK ++
Sbjct: 61 RNPRNPEEVISIPASKAPVFKAGKGLKDKV 90


>gi|317503239|ref|ZP_07961297.1| DNA-binding protein HU [Prevotella salivae DSM 15606]
 gi|315665652|gb|EFV05261.1| DNA-binding protein HU [Prevotella salivae DSM 15606]
          Length = 97

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 42/75 (56%)

Query: 19 GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPR 78
          G ++ D  + V TL   + +S   GE + +S F TF VK++  RV  N  T   + + P+
Sbjct: 15 GYTQADVQKLVNTLIEGMGNSFEAGENVSLSGFGTFEVKKRMERVVVNPSTGLRMLVPPK 74

Query: 79 RVVVFKASSILKKRI 93
           V+ FK ++ +K+++
Sbjct: 75 LVLAFKPNASVKEKL 89


>gi|197119620|ref|YP_002140047.1| integration host factor subunit beta [Geobacter bemidjiensis Bem]
 gi|253699630|ref|YP_003020819.1| histone family protein DNA-binding protein [Geobacter sp. M21]
 gi|197088980|gb|ACH40251.1| integration host factor, beta subunit [Geobacter bemidjiensis
          Bem]
 gi|251774480|gb|ACT17061.1| histone family protein DNA-binding protein [Geobacter sp. M21]
          Length = 93

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  + +  G L+RKDS   V+ +F+ + ++   G+ ++I  F +F ++ +  R 
Sbjct: 1  MTKSELIDKLVEVRGVLTRKDSEAVVSMVFDAMSEALTNGDKVEIRGFGSFTIRDREPRE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN ++ + V I  ++   FK    L++R+
Sbjct: 61 ARNPKSGEIVSIPSKKTPFFKTGKDLRERV 90


>gi|239995520|ref|ZP_04716044.1| histone-like DNA-binding protein [Alteromonas macleodii ATCC
          27126]
 gi|332141941|ref|YP_004427679.1| histone-like DNA-binding protein [Alteromonas macleodii str.
          'Deep ecotype']
 gi|327551963|gb|AEA98681.1| histone-like DNA-binding protein [Alteromonas macleodii str.
          'Deep ecotype']
 gi|332992310|gb|AEF02365.1| histone-like DNA-binding protein [Alteromonas sp. SN2]
          Length = 90

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +    + +  +   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDQIAAGADISKAAAGRALDAFTDSVTAALKDGDQVALVGFGTFSVRERSARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + ++I   +V  FKA   LK
Sbjct: 61 RNPQTGETIQISAAKVPSFKAGKALK 86


>gi|261377756|ref|ZP_05982329.1| integration host factor, beta subunit [Neisseria cinerea ATCC
          14685]
 gi|269146042|gb|EEZ72460.1| integration host factor, beta subunit [Neisseria cinerea ATCC
          14685]
          Length = 104

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 6/95 (6%)

Query: 5  ITRSDLVKSISKEFG------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          +T+S+L+  +++ F       L  KD    V  L + +  S  RG+ I+I  F +F +  
Sbjct: 1  MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          + +R+GRN +T   V++  + V  FK    L++R+
Sbjct: 61 RPARIGRNPKTGDRVEVPEKHVPHFKPGKELRERV 95


>gi|118475521|ref|YP_892021.1| DNA-binding protein HU [Campylobacter fetus subsp. fetus 82-40]
 gi|118414747|gb|ABK83167.1| DNA-binding protein HU [Campylobacter fetus subsp. fetus 82-40]
          Length = 104

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 1/100 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+++ V  ++ + GL++KD+   +      I +   +G+++    F TF V ++ +R  
Sbjct: 1   MTKAEFVGLVASKAGLTKKDTELALDGFLGSISEVLTKGDSVTFVGFGTFGVTERAARTA 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG-RKCN 103
           +   T +E+K+  ++ V FK    LK  +     G  KC+
Sbjct: 61  KVPSTGKEIKVPAKKAVKFKVGKNLKDAVASAGCGSSKCS 100


>gi|91788925|ref|YP_549877.1| nucleoid protein Hbs [Polaromonas sp. JS666]
 gi|91698150|gb|ABE44979.1| bacterial nucleoid protein Hbs [Polaromonas sp. JS666]
          Length = 90

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+K   +S+  +TR + +    +  +  +G ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIAKHADISKAAATRALESTIGAVKTTLKKGGSVSLVGFGTFAVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI   +V  F+    LK
Sbjct: 61 RNPRTGDAIKIKAAKVPKFRPGKALK 86


>gi|49473700|ref|YP_031742.1| integration host factor subunit beta [Bartonella quintana str.
          Toulouse]
 gi|49239203|emb|CAF25520.1| Integration host factor beta-subunit [Bartonella quintana str.
          Toulouse]
          Length = 92

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  +F EI  +   G  +++  F  F VK + +R 
Sbjct: 1  MVKSELVQIIARHNPHLFQRDVENIVNAIFEEISTALANGNRVELRGFGAFSVKSRSARN 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V ++ + +  FK    L+ R+
Sbjct: 61 GRNPRTGETVMVEEKWIPFFKTGKDLRDRL 90


>gi|224170258|ref|XP_002192729.1| PREDICTED: similar to DNA-binding protein hu homolog, partial
          [Taeniopygia guttata]
          Length = 90

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++V  I+K  G+ +      V  L   I DS   GE + +  F +F VK++  +  
Sbjct: 1  MTKAEIVTEIAKTTGIEKASVLAVVEGLMTSIKDSLAHGENVYLRGFGSFIVKERKEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN+  N  + I    +  FK ++  KK +
Sbjct: 61 RNISKNTTIIIPAHNIPAFKPAAEFKKVV 89


>gi|332827350|gb|EGK00110.1| hypothetical protein HMPREF9455_03576 [Dysgonomonas gadei ATCC
          BAA-286]
          Length = 88

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 45/85 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+++ GLS+ DS + +      +      G  + +  F TF V QK +R G
Sbjct: 1  MNKTELINAIAEKSGLSKVDSKKALEAFIESVTGEVKAGGKVALVGFGTFSVTQKAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N +T   + I  ++ V FKA + L
Sbjct: 61 INPRTKAVINIPAKKTVKFKAGADL 85


>gi|90423898|ref|YP_532268.1| histone-like DNA-binding protein [Rhodopseudomonas palustris
           BisB18]
 gi|90105912|gb|ABD87949.1| histone-like DNA-binding protein [Rhodopseudomonas palustris
           BisB18]
          Length = 104

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 45/85 (52%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
            L  ++++E  LS+K +   +  L   I     +GE I+I       V+++ +R+GRN  
Sbjct: 20  HLAAALAEEHELSKKQTETILGDLVGRITKHLKKGERIRIVGLGILQVRKRAARMGRNPA 79

Query: 69  TNQEVKIDPRRVVVFKASSILKKRI 93
           T + ++I   + V F+A+  LK+ +
Sbjct: 80  TGEAIQIKASKKVAFRAAKELKEAV 104


>gi|225011859|ref|ZP_03702297.1| histone family protein DNA-binding protein [Flavobacteria
          bacterium MS024-2A]
 gi|225004362|gb|EEG42334.1| histone family protein DNA-binding protein [Flavobacteria
          bacterium MS024-2A]
          Length = 90

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 48/85 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ + G+S+  + + + +    +  +  +G  + +  F ++ V ++ +R G
Sbjct: 1  MNKTELIDAMAADAGISKAAAKKALESFLGSVGGTLKKGGRVSLVGFGSWSVSKRAARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN QT   +KI  + VV FKA + L
Sbjct: 61 RNPQTGATIKIAAKNVVKFKAGAEL 85


>gi|288941154|ref|YP_003443394.1| histone family protein DNA-binding protein [Allochromatium
          vinosum DSM 180]
 gi|288896526|gb|ADC62362.1| histone family protein DNA-binding protein [Allochromatium
          vinosum DSM 180]
          Length = 90

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ +++   +S+  + R +    + I  +   G+ + +  F TF +K++ +R G
Sbjct: 1  MNKSELIEKMAEAADISKAAAGRALDAFTDSIAVALKEGDTVSLIGFGTFSLKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I   +   FKA   LK  +
Sbjct: 61 RNPQTGATIEIKASKTPSFKAGKALKDAV 89


>gi|218261010|ref|ZP_03476021.1| hypothetical protein PRABACTJOHN_01685 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224259|gb|EEC96909.1| hypothetical protein PRABACTJOHN_01685 [Parabacteroides johnsonii
           DSM 18315]
          Length = 136

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 44/88 (50%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           T+  L+K +++    +   + +F+ +    I +    GE + I  F       +  R GR
Sbjct: 45  TKRALIKELAQRMECTDVAAKKFLNSYIELITEKLSEGEGVSIHYFGKLVPHYQTERPGR 104

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRI 93
           NL+T +E KI  R  V FKAS IL +++
Sbjct: 105 NLRTGEECKIRARTSVKFKASEILIQKL 132


>gi|262273289|ref|ZP_06051104.1| DNA-binding protein HU-alpha [Grimontia hollisae CIP 101886]
 gi|262222662|gb|EEY73972.1| DNA-binding protein HU-alpha [Grimontia hollisae CIP 101886]
          Length = 90

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+++  LS+  +   +      I  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTNLIDLIAEKADLSKAQAKAALEATLAGIEGALKDGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT QE++I    V  F A   LK  +
Sbjct: 61 RNPQTGQEIQIAAANVPAFVAGKALKDAV 89


>gi|221104615|ref|XP_002170589.1| PREDICTED: similar to DNA binding protein hu-like protein [Hydra
          magnipapillata]
          Length = 90

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+  +S + GL++KDS + V ++F+ I       +  +   F +F+V+   +R G
Sbjct: 1  MNKQDLIDFVSAKTGLTKKDSGQAVDSVFDGIISGLKASKDARFVGFGSFNVQATMARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  E+ I     + FKA    K+ +
Sbjct: 61 RNPRTGAEIDIPASNRITFKAGKEFKESV 89


>gi|196232747|ref|ZP_03131598.1| histone family protein DNA-binding protein [Chthoniobacter flavus
          Ellin428]
 gi|196223207|gb|EDY17726.1| histone family protein DNA-binding protein [Chthoniobacter flavus
          Ellin428]
          Length = 107

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ +LV  IS E GL +      V    + I D+  +G+ +++ +F    VK    RV
Sbjct: 3  TLTKRELVVKISNETGLVQHQVFDVVQRTLDHITDALAQGDTVELRNFGILEVKLTKPRV 62

Query: 64 GRNL-QTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN  Q      I  R  V FK+  I+++++
Sbjct: 63 GRNPNQPGSSFVIPARATVKFKSGKIMRQKV 93


>gi|187934552|ref|YP_001884411.1| DNA-binding protein HU [Clostridium botulinum B str. Eklund 17B]
 gi|188590511|ref|YP_001919603.1| DNA-binding protein HU [Clostridium botulinum E3 str. Alaska E43]
 gi|251781035|ref|ZP_04823955.1| DNA-binding protein HU [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
 gi|187722705|gb|ACD23926.1| DNA-binding protein HU [Clostridium botulinum B str. Eklund 17B]
 gi|188500792|gb|ACD53928.1| DNA-binding protein HU [Clostridium botulinum E3 str. Alaska E43]
 gi|243085350|gb|EES51240.1| DNA-binding protein HU [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
          Length = 92

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  L++KD+   + +    + ++   GE +++  F TF  +++ +R G
Sbjct: 1  MNKAELITSMAEKSKLTKKDAELALKSFIESVEEALESGEKVQLVGFGTFETRERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I    V VFK     K ++
Sbjct: 61 RNPRTKEVINIPATTVPVFKPGKEFKDKV 89


>gi|148240879|ref|YP_001220380.1| histone-like DNA-binding protein [Bradyrhizobium sp. BTAi1]
 gi|146411255|gb|ABQ39708.1| Histone-like DNA-binding protein [Bradyrhizobium sp. BTAi1]
          Length = 130

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 4/103 (3%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           T +++ + I+ E  L++  +   V ++F  I D+AV G    +  F  F VK   +R GR
Sbjct: 32  TANEIAEKIAAENDLTKAQAKTIVDSVFKAIADAAVSGAETSLPGFGKFKVKDSPAREGR 91

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT 108
           N  T   + I   R + F  +    K I D + G     D  +
Sbjct: 92  NPSTGATIAIAASRKLTFTPA----KAIKDSLNGGTIPNDGAS 130


>gi|297617754|ref|YP_003702913.1| histone family protein DNA-binding protein [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145591|gb|ADI02348.1| histone family protein DNA-binding protein [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 112

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 56/100 (56%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++LVKS++++ G+++K++ + +      I ++   G+ ++I  F TF V+ + +R  
Sbjct: 1   MNKAELVKSLAEKAGVTQKEAGKVLDAAVASIQEALAGGDKVQIIGFGTFEVRNRRARKV 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
            +  T +E+++   RV  FK    LK+ ++     +K  K
Sbjct: 61  ISPATGEEIEVPATRVPAFKPGKSLKEAVVIKEEPKKTGK 100


>gi|317055654|ref|YP_004104121.1| histone family protein DNA-binding protein [Ruminococcus albus 7]
 gi|315447923|gb|ADU21487.1| histone family protein DNA-binding protein [Ruminococcus albus 7]
          Length = 92

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+++ G ++K++   +  + + I ++  +GE + I  F TF V+ + ++  
Sbjct: 1  MKKAELLAAIAEKNGSTKKNAEAALDAVISTITEALEKGEKVAIPGFGTFEVRDRAAKKS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N  T + + +  ++V  FKA+  LK
Sbjct: 61 INPATKEPIDVPAKKVPAFKAAKALK 86


>gi|258545129|ref|ZP_05705363.1| integration host factor subunit beta [Cardiobacterium hominis
          ATCC 15826]
 gi|258519648|gb|EEV88507.1| integration host factor subunit beta [Cardiobacterium hominis
          ATCC 15826]
          Length = 96

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  +   +  L  +D    V  +  ++C S  +G+ ++I  F +F +  + +R 
Sbjct: 1  MTKSELIDRLCMRYPQLRSQDVEEAVKLIIEKVCQSLEKGDRVEIRGFGSFSLHYREART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V++  + +  F+A   L++R+
Sbjct: 61 GRNPKTGDSVEVPSKSIPYFRAGKELRERV 90


>gi|160884102|ref|ZP_02065105.1| hypothetical protein BACOVA_02078 [Bacteroides ovatus ATCC 8483]
 gi|237717231|ref|ZP_04547712.1| DNA-binding protein HU-beta [Bacteroides sp. D1]
 gi|237718986|ref|ZP_04549467.1| DNA-binding protein HU-beta [Bacteroides sp. 2_2_4]
 gi|260173110|ref|ZP_05759522.1| DNA-binding protein HU-beta [Bacteroides sp. D2]
 gi|262405998|ref|ZP_06082548.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22]
 gi|293368714|ref|ZP_06615319.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
 gi|294647974|ref|ZP_06725525.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a]
 gi|294806912|ref|ZP_06765737.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b]
 gi|298480088|ref|ZP_06998287.1| DNA-binding protein HU [Bacteroides sp. D22]
 gi|299144759|ref|ZP_07037827.1| DNA-binding protein HU [Bacteroides sp. 3_1_23]
 gi|315921386|ref|ZP_07917626.1| DNA-binding protein HU-beta [Bacteroides sp. D2]
 gi|156110444|gb|EDO12189.1| hypothetical protein BACOVA_02078 [Bacteroides ovatus ATCC 8483]
 gi|229443214|gb|EEO49005.1| DNA-binding protein HU-beta [Bacteroides sp. D1]
 gi|229451764|gb|EEO57555.1| DNA-binding protein HU-beta [Bacteroides sp. 2_2_4]
 gi|262356873|gb|EEZ05963.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22]
 gi|292636179|gb|EFF54666.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
 gi|292636690|gb|EFF55157.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a]
 gi|294445941|gb|EFG14583.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b]
 gi|295085555|emb|CBK67078.1| bacterial nucleoid protein Hbs [Bacteroides xylanisolvens XB1A]
 gi|298273897|gb|EFI15459.1| DNA-binding protein HU [Bacteroides sp. D22]
 gi|298515250|gb|EFI39131.1| DNA-binding protein HU [Bacteroides sp. 3_1_23]
 gi|313695261|gb|EFS32096.1| DNA-binding protein HU-beta [Bacteroides sp. D2]
          Length = 90

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+ +++ E  +S+ D+ + +      + ++   G+ + +  F TF V ++  R G
Sbjct: 1  MNKSDLISAMAAEAQMSKADAKKALDAFITSVTNAMKAGDKVSLVGFGTFSVSERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T   + I  ++V  FKA + L   +
Sbjct: 61 INPSTKATITIPAKKVAKFKAGAELSAAV 89


>gi|78064724|ref|YP_367493.1| histone-like DNA-binding protein [Burkholderia sp. 383]
 gi|107021567|ref|YP_619894.1| histone-like DNA-binding protein [Burkholderia cenocepacia AU
          1054]
 gi|115350111|ref|YP_771950.1| histone family protein DNA-binding protein [Burkholderia
          ambifaria AMMD]
 gi|116688089|ref|YP_833712.1| histone family protein DNA-binding protein [Burkholderia
          cenocepacia HI2424]
 gi|134294197|ref|YP_001117932.1| histone family protein DNA-binding protein [Burkholderia
          vietnamiensis G4]
 gi|161523246|ref|YP_001578258.1| histone family protein DNA-binding protein [Burkholderia
          multivorans ATCC 17616]
 gi|167584991|ref|ZP_02377379.1| DNA-binding protein HU-alpha [Burkholderia ubonensis Bu]
 gi|170699034|ref|ZP_02890091.1| histone family protein DNA-binding protein [Burkholderia
          ambifaria IOP40-10]
 gi|170731439|ref|YP_001763386.1| histone family protein DNA-binding protein [Burkholderia
          cenocepacia MC0-3]
 gi|171318830|ref|ZP_02907967.1| histone family protein DNA-binding protein [Burkholderia
          ambifaria MEX-5]
 gi|172059131|ref|YP_001806783.1| histone family protein DNA-binding protein [Burkholderia
          ambifaria MC40-6]
 gi|189348897|ref|YP_001944525.1| DNA-binding protein HU-beta [Burkholderia multivorans ATCC 17616]
 gi|206561866|ref|YP_002232631.1| DNA-binding protein HU-alpha [Burkholderia cenocepacia J2315]
 gi|221202221|ref|ZP_03575256.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD2M]
 gi|221208718|ref|ZP_03581717.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD2]
 gi|221214332|ref|ZP_03587304.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD1]
 gi|238025719|ref|YP_002909950.1| DNA-binding protein HU-alpha [Burkholderia glumae BGR1]
 gi|254246661|ref|ZP_04939982.1| DNA-binding protein HU-alpha [Burkholderia cenocepacia PC184]
 gi|254251009|ref|ZP_04944327.1| hypothetical protein BDAG_00176 [Burkholderia dolosa AUO158]
 gi|330815006|ref|YP_004358711.1| histone-like DNA-binding protein [Burkholderia gladioli BSR3]
 gi|77965469|gb|ABB06849.1| Histone-like DNA-binding protein [Burkholderia sp. 383]
 gi|105891756|gb|ABF74921.1| histone-like DNA-binding protein [Burkholderia cenocepacia AU
          1054]
 gi|115280099|gb|ABI85616.1| histone family protein DNA-binding protein [Burkholderia
          ambifaria AMMD]
 gi|116646178|gb|ABK06819.1| histone family protein DNA-binding protein [Burkholderia
          cenocepacia HI2424]
 gi|124871437|gb|EAY63153.1| DNA-binding protein HU-alpha [Burkholderia cenocepacia PC184]
 gi|124893618|gb|EAY67498.1| hypothetical protein BDAG_00176 [Burkholderia dolosa AUO158]
 gi|134137354|gb|ABO53097.1| histone family protein DNA-binding protein [Burkholderia
          vietnamiensis G4]
 gi|160340675|gb|ABX13761.1| histone family protein DNA-binding protein [Burkholderia
          multivorans ATCC 17616]
 gi|169814681|gb|ACA89264.1| histone family protein DNA-binding protein [Burkholderia
          cenocepacia MC0-3]
 gi|170136070|gb|EDT04341.1| histone family protein DNA-binding protein [Burkholderia
          ambifaria IOP40-10]
 gi|171095971|gb|EDT40904.1| histone family protein DNA-binding protein [Burkholderia
          ambifaria MEX-5]
 gi|171991648|gb|ACB62567.1| histone family protein DNA-binding protein [Burkholderia
          ambifaria MC40-6]
 gi|189332919|dbj|BAG41989.1| DNA-binding protein HU-beta [Burkholderia multivorans ATCC 17616]
 gi|198037908|emb|CAR53853.1| DNA-binding protein HU-alpha [Burkholderia cenocepacia J2315]
 gi|221165987|gb|EED98461.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD1]
 gi|221171350|gb|EEE03798.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD2]
 gi|221178015|gb|EEE10427.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD2M]
 gi|237874913|gb|ACR27246.1| DNA-binding protein HU-alpha [Burkholderia glumae BGR1]
 gi|325521652|gb|EGD00422.1| DNA-binding protein HU-alpha [Burkholderia sp. TJI49]
 gi|327367399|gb|AEA58755.1| histone-like DNA-binding protein [Burkholderia gladioli BSR3]
          Length = 92

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++ + G S+  +   + TL   I  +  +G+A+++  F +F   ++ +R G
Sbjct: 1  MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDAVQLIGFGSFGSGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + +KI   + V F A    K
Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFK 86


>gi|302865832|ref|YP_003834469.1| histone family protein DNA-binding protein [Micromonospora
          aurantiaca ATCC 27029]
 gi|315502377|ref|YP_004081264.1| histone family protein DNA-binding protein [Micromonospora sp.
          L5]
 gi|302568691|gb|ADL44893.1| histone family protein DNA-binding protein [Micromonospora
          aurantiaca ATCC 27029]
 gi|315408996|gb|ADU07113.1| histone family protein DNA-binding protein [Micromonospora sp.
          L5]
          Length = 203

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+++++   G  RK +T  +  +  E+  +  +GE + I+ F  F  + +G+R  
Sbjct: 1  MNKAELIEALAVRLG-DRKTATAALDAVLAEVQAAVTKGEKVAITGFGAFEKRVRGARTA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + VK+    V  F+A +  K+ +
Sbjct: 60 RNPRTGEAVKVKKTSVPTFRAGAGFKEMV 88


>gi|268609408|ref|ZP_06143135.1| nucleoid protein Hbs [Ruminococcus flavefaciens FD-1]
          Length = 91

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L+ SI+ +   ++KD+   +      I ++   G+ + I+ F TF V+++G +  
Sbjct: 1  MTKTELINSIADKANCTKKDAASALEATLAAIQEALENGDKVSITGFGTFEVRERGEKTC 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T  ++   P +   FKA   LK+ +
Sbjct: 61 INPKTKAKMVCPPCKAPAFKAGRGLKEAV 89


>gi|189485571|ref|YP_001956512.1| DNA-binding protein HU-1 [uncultured Termite group 1 bacterium
          phylotype Rs-D17]
 gi|170287530|dbj|BAG14051.1| DNA-binding protein HU-1 [uncultured Termite group 1 bacterium
          phylotype Rs-D17]
          Length = 89

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + D+VK +S   GL++ DS + +  L   I  +      I +S   +F  K + +R GRN
Sbjct: 3  KPDIVKQVSDISGLTQGDSNKAIKALVKVIQITLKNNGVISLSGLGSFRAKTRKARQGRN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           +T + + I P + V FK ++ L+K I
Sbjct: 63 PKTKEVILIPPGKKVSFKPTTTLRKII 89


>gi|325297733|ref|YP_004257650.1| histone family protein DNA-binding protein [Bacteroides
          salanitronis DSM 18170]
 gi|324317286|gb|ADY35177.1| histone family protein DNA-binding protein [Bacteroides
          salanitronis DSM 18170]
          Length = 97

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/85 (22%), Positives = 45/85 (52%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          +L   +++  G   +D+ + V ++   + +    G+ + ++ F TF VK++  R+  N  
Sbjct: 5  ELTNELARRLGYENQDAAQLVNSMVTMMSEQLQEGKTLVLADFGTFEVKKELERIEVNPL 64

Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93
          T Q   + P+ V+ FK ++  K+++
Sbjct: 65 TKQRFLVPPKLVLTFKPAAAFKEKL 89


>gi|145630846|ref|ZP_01786623.1| integration host factor beta-subunit [Haemophilus influenzae
          R3021]
 gi|145639202|ref|ZP_01794809.1| integration host factor beta-subunit [Haemophilus influenzae
          PittII]
 gi|229845052|ref|ZP_04465188.1| hypothetical protein CGSHi6P18H1_00834 [Haemophilus influenzae
          6P18H1]
 gi|229846876|ref|ZP_04466983.1| hypothetical protein CGSHi7P49H1_02608 [Haemophilus influenzae
          7P49H1]
 gi|260582649|ref|ZP_05850438.1| integration host factor, beta subunit [Haemophilus influenzae
          NT127]
 gi|144983506|gb|EDJ90974.1| integration host factor beta-subunit [Haemophilus influenzae
          R3021]
 gi|145271764|gb|EDK11674.1| integration host factor beta-subunit [Haemophilus influenzae
          PittII]
 gi|229810365|gb|EEP46084.1| hypothetical protein CGSHi7P49H1_02608 [Haemophilus influenzae
          7P49H1]
 gi|229812024|gb|EEP47717.1| hypothetical protein CGSHi6P18H1_00834 [Haemophilus influenzae
          6P18H1]
 gi|260094321|gb|EEW78220.1| integration host factor, beta subunit [Haemophilus influenzae
          NT127]
 gi|309750778|gb|ADO80762.1| Integration host factor, beta-subunit [Haemophilus influenzae
          R2866]
          Length = 94

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 5  ITRSDLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ K ++K+  L  K+    V  +   I  S   G+ ++I  F +F +  +  R+
Sbjct: 1  MTKSELIEKLLAKQPTLPAKEIENMVKDILEFISQSLENGDRVEIRGFGSFSLHHRQPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  + V  FKA   LK R+
Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARV 90


>gi|291614517|ref|YP_003524674.1| integration host factor, subunit beta [Sideroxydans
          lithotrophicus ES-1]
 gi|291584629|gb|ADE12287.1| integration host factor, beta subunit [Sideroxydans
          lithotrophicus ES-1]
          Length = 95

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDL+  ++  +  L  KD+   V  + + +  +   G  I+I  F +F +  +  R+
Sbjct: 1  MTRSDLIAKLADRYTQLLGKDAELAVKVILDSMSATLSHGGRIEIRGFGSFALNYRPPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++  +V++  + V  FKA   L++R+
Sbjct: 61 GRNPKSGDKVQVPAKYVPHFKAGKELRERV 90


>gi|83592888|ref|YP_426640.1| histone-like DNA-binding protein [Rhodospirillum rubrum ATCC
          11170]
 gi|83575802|gb|ABC22353.1| Histone-like DNA-binding protein [Rhodospirillum rubrum ATCC
          11170]
          Length = 91

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++   GLS+ D+ + V  +F+ I  +    + +++  F TF V ++ +  G
Sbjct: 1  MNKNDLIAAVADSAGLSKADAAKAVDGVFDAITGALKDDQEVRLVGFGTFAVTKRAATEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I   +   FK    LK  +
Sbjct: 61 RNPRTGETIAIPASKQPKFKPGKGLKDAV 89


>gi|270700801|ref|ZP_06223048.1| integration host factor, beta subunit [Haemophilus influenzae
          HK1212]
 gi|319896915|ref|YP_004135110.1| integration host factor beta-subunit [Haemophilus influenzae
          F3031]
 gi|329123270|ref|ZP_08251838.1| integration host factor beta subunit [Haemophilus aegyptius ATCC
          11116]
 gi|270315863|gb|EFA27957.1| integration host factor, beta subunit [Haemophilus influenzae
          HK1212]
 gi|317432419|emb|CBY80774.1| Integration host factor beta-subunit [Haemophilus influenzae
          F3031]
 gi|327471479|gb|EGF16927.1| integration host factor beta subunit [Haemophilus aegyptius ATCC
          11116]
          Length = 94

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ +S K+  L  K+    V  +   I  S  +G+ +++  F +F +  +  R+
Sbjct: 1  MTKSELMEKLSAKQPTLPAKEIENMVKDILEFISQSLEKGDRVEVRGFGSFSLHHRQPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  + V  FKA   LK R+
Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARV 90


>gi|317153197|ref|YP_004121245.1| histone family protein DNA-binding protein [Desulfovibrio
          aespoeensis Aspo-2]
 gi|316943448|gb|ADU62499.1| histone family protein DNA-binding protein [Desulfovibrio
          aespoeensis Aspo-2]
          Length = 91

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K++S++  +   ++T+ V    + + ++ +RG+ ++I  F +F +K      G
Sbjct: 1  MNKSELIKALSEQKKMHVDEATKVVGAFVDSVKEALLRGDRVEIRGFGSFKIKDYEGYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T   V++  +++  F+    LK+ I D
Sbjct: 61 RNPKTGSVVQVRSKKLPFFRPGKELKEFIND 91


>gi|94986874|ref|YP_594807.1| nucleoid DNA-binding protein [Lawsonia intracellularis
          PHE/MN1-00]
 gi|94731123|emb|CAJ54485.1| Bacterial nucleoid DNA-binding protein [Lawsonia intracellularis
          PHE/MN1-00]
          Length = 96

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 46/86 (53%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+  +T+ D++ +I ++   ++ D    V TL + +  +      + IS F  F    K 
Sbjct: 1  MNNVLTKVDIIDAIYEKINNNKADIKNIVETLLSIMKQAIKTDNTLLISGFGKFEAYSKH 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86
          +R GRN QT++ + +  R+V+VF+ S
Sbjct: 61 TRKGRNPQTDEAITLPSRKVIVFRLS 86


>gi|160872885|ref|ZP_02063017.1| DNA-binding protein HU-beta [Rickettsiella grylli]
 gi|159121684|gb|EDP47022.1| DNA-binding protein HU-beta [Rickettsiella grylli]
          Length = 92

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 43/86 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+  I +   + +  + + +  + + I  +   GE + +  F    V+ + +R G
Sbjct: 1  MNKSDLIDVIGEAAQIPKNVAGKTLEKILDSITKALCEGEDVSLVGFGALCVRHRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + + I    VV FKA  +LK
Sbjct: 61 RNPKTGESIPIKASNVVAFKAGKVLK 86


>gi|332638320|ref|ZP_08417183.1| DNA-binding protein hu [Weissella cibaria KACC 11862]
          Length = 92

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 40/64 (62%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          ++++L+  ++ + G ++ ++T+ V  L + I D   +GE + +  F TF V+++ +R GR
Sbjct: 3  SKTELIDLVAAKTGQAKSETTKTVNALLDVIKDQLAQGEKVALVGFGTFEVRERAARKGR 62

Query: 66 NLQT 69
          N QT
Sbjct: 63 NPQT 66


>gi|307244028|ref|ZP_07526147.1| DNA-binding protein HU [Peptostreptococcus stomatis DSM 17678]
 gi|306492552|gb|EFM64586.1| DNA-binding protein HU [Peptostreptococcus stomatis DSM 17678]
          Length = 93

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  +S++  L++K+S   +      + ++ V G+ +++  F TF  +++ +R G
Sbjct: 1  MNKAELVAKMSEKSNLTKKESELALNAFMKVVEETLVAGDKVQLVGFGTFETRERAARSG 60

Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93
          RN +  +EV +I   +  VFKA   LK+ +
Sbjct: 61 RNPRKPEEVIEIPASKAPVFKAGKGLKELV 90


>gi|154492585|ref|ZP_02032211.1| hypothetical protein PARMER_02219 [Parabacteroides merdae ATCC
          43184]
 gi|154087810|gb|EDN86855.1| hypothetical protein PARMER_02219 [Parabacteroides merdae ATCC
          43184]
          Length = 94

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 44/88 (50%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+  L+K +++    +   + +F+ +    I +    GE + I  F       +  R GR
Sbjct: 3  TKRALIKELAQRMECTDVAAKKFLNSYIELITEKLSEGEGVSIHYFGKLVPHYQTERPGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93
          NL+T +E KI  R  V FKAS IL +++
Sbjct: 63 NLRTGEECKIRARTSVKFKASEILIQKL 90


>gi|224826390|ref|ZP_03699492.1| integration host factor, beta subunit [Lutiella nitroferrum 2002]
 gi|224601491|gb|EEG07672.1| integration host factor, beta subunit [Lutiella nitroferrum 2002]
          Length = 104

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query: 5  ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          +T+S+L+  +++        L  KD+   V T+ + +  S   G+ I+I  F +F +  +
Sbjct: 1  MTKSELIARLAEHLAERNSQLVYKDAELAVKTILDAMAGSLATGQRIEIRGFGSFDLNYR 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            RVGRN ++   V +  + V  FKA   L++R+
Sbjct: 61 PPRVGRNPKSGSSVSVPEKFVPHFKAGKELRERV 94


>gi|326386334|ref|ZP_08207958.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens
          DSM 19370]
 gi|326209559|gb|EGD60352.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens
          DSM 19370]
          Length = 93

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDS-TRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ ++K+    R D   R V   F+EI      G  +++  F  F  +++ +R 
Sbjct: 1  MIRSELLQVLAKQSPDMRSDEIERVVDVFFDEIGKRLAEGGRVELRGFGAFSTRERDARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  +RV  FK    ++ R+
Sbjct: 61 GRNPRTGEAVDVPGKRVPYFKPGKEMRVRL 90


>gi|32491258|ref|NP_871512.1| hypothetical protein WGLp509 [Wigglesworthia glossinidia
          endosymbiont of Glossina brevipalpis]
 gi|25166465|dbj|BAC24655.1| hupA [Wigglesworthia glossinidia endosymbiont of Glossina
          brevipalpis]
          Length = 90

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +  + I +S   G A+++  F TF + ++ +R G
Sbjct: 1  MNKTQLIDVIANKAELSKIKARAALESTLDAITNSLKEGNAVQLIGFGTFKINRRNARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAATNVPTFVSGKALKAAV 89


>gi|302877955|ref|YP_003846519.1| integration host factor, beta subunit [Gallionella
          capsiferriformans ES-2]
 gi|302580744|gb|ADL54755.1| integration host factor, beta subunit [Gallionella
          capsiferriformans ES-2]
          Length = 97

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRS+L+  ++ +F  L+  D    V T+ +E+  +  RG  I+I  F +F +  +  R 
Sbjct: 1  MTRSELIVQLAAKFPQLTNSDIDMAVRTILDEMSRTLARGNRIEIRGFGSFGLNHRPPRK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++   V +  + V  FK    L++R+
Sbjct: 61 GRNPKSGVNVMVPAKYVPHFKTGKELRERV 90


>gi|237748740|ref|ZP_04579220.1| DNA-binding protein Hu-beta [Oxalobacter formigenes OXCC13]
 gi|229380102|gb|EEO30193.1| DNA-binding protein Hu-beta [Oxalobacter formigenes OXCC13]
          Length = 90

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+K   +S+  + R +  + + +  S    +++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIAKSADISKAAAARSLDAVIDAVTTSLKNNDSVTLVGFGTFSVGERAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + +KI   +V  F+A  +LK
Sbjct: 61 RNPRTGEVIKIKSAKVPKFRAGKLLK 86


>gi|152966755|ref|YP_001362539.1| histone family protein DNA-binding protein [Kineococcus
          radiotolerans SRS30216]
 gi|151361272|gb|ABS04275.1| histone family protein DNA-binding protein [Kineococcus
          radiotolerans SRS30216]
          Length = 187

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++++V ++    G  RK++T  V  +   I  +  +G+ I IS F TF  + + +R G
Sbjct: 1  MNKTEMVDALETRLG-GRKEATAAVEAVIELIQLTVAKGDKIAISGFGTFEKQARNARTG 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + VKI    V  F+  +  K+ + D
Sbjct: 60 RNPRTGEAVKIKKTSVPRFRPGTAFKEIVSD 90


>gi|218129554|ref|ZP_03458358.1| hypothetical protein BACEGG_01131 [Bacteroides eggerthii DSM 20697]
 gi|217988284|gb|EEC54607.1| hypothetical protein BACEGG_01131 [Bacteroides eggerthii DSM 20697]
          Length = 106

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + + +L+K+++   GL   D+++ ++   N + D   RGE +  S    F V++  +R G
Sbjct: 1   MNKQELIKAVAAASGLCVVDASKEMSAFENILEDCMARGEILSWSGVGAFCVREHKARPG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM-DDMRGRKCNKDD 106
           RN  T   ++I  R+VV F     L++ ++   + GR+    D
Sbjct: 61  RNPFTGLGMRIPTRKVVKFSPGKSLREAVIKKGIHGRRARCTD 103


>gi|90413395|ref|ZP_01221388.1| putative DNA-binding protein HU-alpha [Photobacterium profundum
          3TCK]
 gi|90325637|gb|EAS42106.1| putative DNA-binding protein HU-alpha [Photobacterium profundum
          3TCK]
          Length = 90

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 44/86 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +    I  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDLIAEKADLSKAQAKLALESTLEGITGALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT QE++I    V  F +   LK
Sbjct: 61 RNPQTGQEIQIAAANVPAFVSGKALK 86


>gi|16081263|ref|NP_393571.1| DNA-binding protein HTa [Thermoplasma acidophilum DSM 1728]
 gi|11467945|sp|P02345|DBH_THEAC RecName: Full=DNA-binding protein HTa
 gi|10639239|emb|CAC11241.1| DNA-binding protein HTa [Thermoplasma acidophilum]
          Length = 90

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 47/83 (56%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          S+L K ++K+   ++K +   + +  +EI   A  G+ I ++ F  F  + +G R  RN 
Sbjct: 5  SELSKEVAKKANTTQKVARTVIKSFLDEIVSQANGGQKINLAGFGIFERRTQGPRKARNP 64

Query: 68 QTNQEVKIDPRRVVVFKASSILK 90
          QT + +++  ++  VF+ASS +K
Sbjct: 65 QTKKVIEVPSKKKFVFRASSKIK 87


>gi|260904564|ref|ZP_05912886.1| HU_IHF family transcriptional regulator [Brevibacterium linens
          BL2]
          Length = 95

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          RS+LV  +++  GL++K  +  +  +F+   D   +GE + I  + +    ++ +R GRN
Sbjct: 5  RSELVAEVAENSGLTQKQVSDVLDGVFDVFSDVVGKGEKLTIPGWLSVERTERAARKGRN 64

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT +E++I     V   A S LK
Sbjct: 65 PQTGEEIQIKAGYSVKLSAGSKLK 88


>gi|303258162|ref|ZP_07344170.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
 gi|302859181|gb|EFL82264.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
          Length = 92

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 40/71 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV ++++E G S+ D    +  L  ++  +   G+ I +  F TF   ++ +R G
Sbjct: 1  MNKTELVAAVAEETGKSKADVKEILEALIAQVVKTVKAGDEIALIGFGTFKSAERAARTG 60

Query: 65 RNLQTNQEVKI 75
          RN  T +E+KI
Sbjct: 61 RNPATGKEIKI 71


>gi|260219735|emb|CBA26580.1| DNA-binding protein HU-beta [Curvibacter putative symbiont of
          Hydra magnipapillata]
          Length = 90

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+K   +S+  +TR + +    +  +  +G  + +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIAKHADISKAAATRALESTIGAVKTTLKKGGTVSLVGFGTFAVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI   +V  F+    LK
Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALK 86


>gi|254469567|ref|ZP_05082972.1| bacterial nucleoid DNA-binding protein [Pseudovibrio sp. JE062]
 gi|211961402|gb|EEA96597.1| bacterial nucleoid DNA-binding protein [Pseudovibrio sp. JE062]
          Length = 91

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++ GL++  +   V   F  I ++   G+ ++I  F  F V  + +  G
Sbjct: 1  MNKNDLIGAVAEKTGLTKAQAGEAVEASFEAITETLKSGDEVRIIGFGNFSVSARAATEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + ++I   +   FKA   LK  +
Sbjct: 61 RNPRTGETIQIPASKTPKFKAGKGLKDAV 89


>gi|119953028|ref|YP_945237.1| DNA-binding protein HbbU [Borrelia turicatae 91E135]
 gi|119861799|gb|AAX17567.1| DNA-binding protein HbbU [Borrelia turicatae 91E135]
          Length = 108

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           +T+SD+V  IS         L +K     V   F E+ +S      I+  SF TF + K+
Sbjct: 9   VTKSDIVNQISLNIKNSNEKLEKKYIRLVVDAFFEELKNSLCLNNVIEFRSFGTFELRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG +  RN QT + V +D   V  F+    LK+R+ 
Sbjct: 69  KGRQNARNPQTGEYVNVDDHHVAYFRPGKDLKERVW 104


>gi|251771160|gb|EES51742.1| histone family protein DNA-binding protein [Leptospirillum
          ferrodiazotrophum]
          Length = 98

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ ++K   LS+KD    V      I  S  +GE + I  F TF    + +R G
Sbjct: 1  MNKTELIEKVAKSSKLSKKDVHAVVDGFLKSIEASMKKGEKVTIVGFGTFGTVSRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E+KI  +    F     L++ +
Sbjct: 61 RNPKTGKEIKIAAKTAPKFSPGKALRESV 89


>gi|75487893|sp|Q9AKK7|HLP_RICMO RecName: Full=Histone-like DNA-binding protein
 gi|13235521|emb|CAC33647.1| Integration host factor alpha-subunit [Rickettsia montanensis]
          Length = 95

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 1/95 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+  +   +S + G S       V T+F+ I + A + + + + +F +F VKQK  R 
Sbjct: 2  TITKEKIAAMLSSKLGFSNNLCEEIVHTVFSNILEIA-KEQKLTLKNFGSFEVKQKNPRP 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          G N  T   V I+ ++ + F  SS LK  I    R
Sbjct: 61 GINFHTKAPVIIESKKNLRFVPSSKLKALINGSTR 95


>gi|325300776|ref|YP_004260692.1| histone family protein DNA-binding protein [Bacteroides
          salanitronis DSM 18170]
 gi|324320329|gb|ADY38219.1| histone family protein DNA-binding protein [Bacteroides
          salanitronis DSM 18170]
          Length = 176

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 44/82 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  I+ + G+ +KD    + +L  E+ +S  +G+ I +  F +F +K +  +  
Sbjct: 1  MTKAELVNIIAIKTGIDKKDVMAIMESLMAEVKNSLGKGKHIYLRGFGSFIIKHRAEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  V +    +  FK +
Sbjct: 61 RNISQNTTVMVPAHNIPAFKPA 82


>gi|238785563|ref|ZP_04629544.1| DNA-binding protein HU-alpha [Yersinia bercovieri ATCC 43970]
 gi|238794946|ref|ZP_04638543.1| DNA-binding protein HU-alpha [Yersinia intermedia ATCC 29909]
 gi|238798678|ref|ZP_04642152.1| DNA-binding protein HU-alpha [Yersinia mollaretii ATCC 43969]
 gi|238713548|gb|EEQ05579.1| DNA-binding protein HU-alpha [Yersinia bercovieri ATCC 43970]
 gi|238717496|gb|EEQ09338.1| DNA-binding protein HU-alpha [Yersinia mollaretii ATCC 43969]
 gi|238725704|gb|EEQ17261.1| DNA-binding protein HU-alpha [Yersinia intermedia ATCC 29909]
          Length = 91

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+ +++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKAQAKAALESTLAAITESLKDGDPVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDSV 89


>gi|307942066|ref|ZP_07657417.1| DNA-binding protein HRL18 [Roseibium sp. TrichSKD4]
 gi|307774352|gb|EFO33562.1| DNA-binding protein HRL18 [Roseibium sp. TrichSKD4]
          Length = 91

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++ GL++  +   V   F  + ++   G+ ++I  F  F V  + +  G
Sbjct: 1  MNKNDLIAAVAEKTGLTKAQAGEAVDATFEAVTETLKAGDEVRIIGFGNFSVSARAATEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + ++I   +   FKA   LK  +
Sbjct: 61 RNPRTGETIQIPASKTPKFKAGKGLKDAV 89


>gi|332186781|ref|ZP_08388523.1| bacterial DNA-binding family protein [Sphingomonas sp. S17]
 gi|332013114|gb|EGI55177.1| bacterial DNA-binding family protein [Sphingomonas sp. S17]
          Length = 90

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++   GL R D+ + V  +F  I  +  +G+ +++  F TF V ++ +  G
Sbjct: 1  MNKQELIATVADSSGLVRGDAVKAVDAVFEAITAALKKGDEVRLVGFGTFSVSKRKASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I       FK   +LK  +
Sbjct: 61 RNPRTGEPMTIKASSQPKFKPGKLLKDSV 89


>gi|228473931|ref|ZP_04058672.1| DNA-binding protein HU [Capnocytophaga gingivalis ATCC 33624]
 gi|228274445|gb|EEK13286.1| DNA-binding protein HU [Capnocytophaga gingivalis ATCC 33624]
          Length = 106

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 43/85 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++V  IS++ G+ + +    V      I DS  +G+ + +  F +F VK +  + G
Sbjct: 1  MTKAEIVAKISEKLGIEKTEVQNVVEHFMEGIKDSLEKGDNVYLRGFGSFIVKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  + I    +  FK + + 
Sbjct: 61 RNISKNTTITIPAHNIPAFKPAKVF 85


>gi|158321657|ref|YP_001514164.1| histone family protein DNA-binding protein [Alkaliphilus
          oremlandii OhILAs]
 gi|158141856|gb|ABW20168.1| histone family protein DNA-binding protein [Alkaliphilus
          oremlandii OhILAs]
          Length = 92

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  ++++  L++KD+   + +    + ++   G+ +++  F TF V+++  R G
Sbjct: 1  MNKAELVAKMAEKAQLTKKDTELALNSFMETVEEALATGDKVQLVGFGTFEVRERKPRQG 60

Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93
          RN +  ++V  I   +  VFKA   LK+++
Sbjct: 61 RNPRNPEQVIDIPASKAPVFKAGKTLKEQM 90


>gi|71483084|gb|AAZ32517.1| nucleoid DNA binding protein [uncultured euryarchaeote Alv-FOS4]
          Length = 89

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 49/83 (59%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          +++ K ++K+ GLS+K +   +     E+ +   +GE+++I+    F  + + +R  RN 
Sbjct: 5  TEISKPVAKKTGLSQKKAREVINAFLEEVLEQVNKGESVRIAGLGIFERRVQKARKVRNP 64

Query: 68 QTNQEVKIDPRRVVVFKASSILK 90
          +T + +K+  ++ +VFK S+ +K
Sbjct: 65 RTGKMMKVGEKKKLVFKPSANIK 87


>gi|329960404|ref|ZP_08298814.1| putative DNA-binding protein HU [Bacteroides fluxus YIT 12057]
 gi|328532764|gb|EGF59549.1| putative DNA-binding protein HU [Bacteroides fluxus YIT 12057]
          Length = 93

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV+ ISK+ G+ R +    V      +  S   G+ + +  F +F VK++  + G
Sbjct: 1  MTKADLVQEISKQTGIDRDEVLMIVEAFMETVKCSLSMGKEVYLRGFGSFIVKRRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN+  N  + I    +  FK S     +I
Sbjct: 61 RNIGQNTTLIIPAHDIPAFKPSKEFSNKI 89


>gi|237807496|ref|YP_002891936.1| histone family protein DNA-binding protein [Tolumonas auensis DSM
          9187]
 gi|237499757|gb|ACQ92350.1| histone family protein DNA-binding protein [Tolumonas auensis DSM
          9187]
          Length = 91

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++L+ +++ E   ++  +   +  L   +    V GE + I    TF +  K +R+GRN
Sbjct: 3  KAELINAVATEMNTAKHIADEALFALGKVLQRQLVAGEPLLIPGIGTFSILNKAARLGRN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSIL 89
           QT + V+I  ++ V FKA+  L
Sbjct: 63 PQTGETVEIAAKKTVKFKAAKAL 85


>gi|239814795|ref|YP_002943705.1| histone family protein DNA-binding protein [Variovorax paradoxus
          S110]
 gi|319792644|ref|YP_004154284.1| histone family protein DNA-binding protein [Variovorax paradoxus
          EPS]
 gi|239801372|gb|ACS18439.1| histone family protein DNA-binding protein [Variovorax paradoxus
          S110]
 gi|315595107|gb|ADU36173.1| histone family protein DNA-binding protein [Variovorax paradoxus
          EPS]
          Length = 90

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+K   +S+  +TR + +    I  +  +G ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIAKNADISKAAATRALESTIGAIRTTLKKGGSVSLVGFGTFAVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI   ++  F+    LK
Sbjct: 61 RNPRTGDAIKIKAAKIPKFRPGKALK 86


>gi|114048970|ref|YP_739520.1| histone family protein DNA-binding protein [Shewanella sp. MR-7]
 gi|113890412|gb|ABI44463.1| histone family protein DNA-binding protein [Shewanella sp. MR-7]
          Length = 90

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I++   +++ ++ R + +    I +S   G+ I I  F +F    + +R G
Sbjct: 1  MNKTELIAKIAENADITKAEAARALKSFEAAITESMKNGDKISIVGFGSFETSIRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I    V  FKA   L+
Sbjct: 61 RNPQTGKEIQIAEATVPKFKAGKTLR 86


>gi|126661201|ref|ZP_01732276.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110]
 gi|126617496|gb|EAZ88290.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110]
          Length = 91

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 43/89 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  LVK+I+ E G  +   T+ +      I ++   G+ + +  F TF  + +  R G
Sbjct: 1  MNKEQLVKAIAAETGQPQSVVTKILNATTETIVETVANGDKLTLVGFGTFEPRPRKERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +N QT + + I    +  F A  I K+++
Sbjct: 61 KNPQTGEPLTIPATTIPAFSAGKIFKEKV 89


>gi|58176578|pdb|1RIY|A Chain A, Hu Mutant V42i From Thermotoga Maritima
          Length = 90

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  ++K+ G  +KD    + T+   I ++  +GE I+I  F +F V++  +R G
Sbjct: 1  MNKKELIDRVAKKAGAKKKDVKLILDTILETITEALAKGEKIQIVGFGSFEVRKAAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N QT + + I  R+V  FK    LK+++
Sbjct: 61 VNPQTRKPITIPERKVPKFKPGKALKEKV 89


>gi|14194634|sp|Q9RZ89|DBH_DEIRA RecName: Full=DNA-binding protein HU
          Length = 122

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 49/89 (55%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV+ ++ + GL++K S   ++++   +  +   G+++ +    T  VK+  +R G
Sbjct: 34  VAKTQLVEMVADQTGLTKKQSEEAISSMLECVVSALQSGKSVGLPGLGTLSVKETAARTG 93

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
               T+++++I   + V FK +S LK  +
Sbjct: 94  VRPGTSEKIQIPAGKKVAFKVASTLKGNL 122


>gi|119475179|ref|ZP_01615532.1| probable DNA-binding protein [marine gamma proteobacterium
          HTCC2143]
 gi|119451382|gb|EAW32615.1| probable DNA-binding protein [marine gamma proteobacterium
          HTCC2143]
          Length = 90

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 45/87 (51%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +SDL   I+ +  +    + + ++ + +EI ++  R E++ +  F TF  + + +R G+N
Sbjct: 3  KSDLATEIADKADIPADKAQQVLSAILDEITNALSRKESVSLIGFGTFEPRHRNARAGKN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT   ++I     V FK    LK+ +
Sbjct: 63 PQTGVALQIAASNTVGFKPGKALKEAV 89


>gi|269120171|ref|YP_003308348.1| histone family protein DNA-binding protein [Sebaldella termitidis
          ATCC 33386]
 gi|268614049|gb|ACZ08417.1| histone family protein DNA-binding protein [Sebaldella termitidis
          ATCC 33386]
          Length = 91

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 41/71 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++ + +++ +K  G ++K S   V      +  + V+G  ++   + TF V+++ +R G
Sbjct: 1  MSKKEFIEAYAKSTGETKKRSEELVNAFLETVEKTLVKGNPVQFVGWGTFGVQKRAARKG 60

Query: 65 RNLQTNQEVKI 75
          RN QT +E+KI
Sbjct: 61 RNPQTGKEIKI 71


>gi|152990572|ref|YP_001356294.1| DNA-binding protein HU [Nitratiruptor sp. SB155-2]
 gi|151422433|dbj|BAF69937.1| DNA-binding protein HU [Nitratiruptor sp. SB155-2]
          Length = 91

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 47/87 (54%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++ V+ ++++ GLS+KD+ + +      I D+   G+ +    F TF   Q+ +R  + 
Sbjct: 3  KAEFVQIVAEKAGLSKKDTQKVIDAALEVITDALKNGDEVAFIGFGTFTTAQRAAREAKV 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
            T++ VK+   RVV FK    LK+ +
Sbjct: 63 PGTDRVVKVPATRVVKFKVGKKLKEAV 89


>gi|15807733|ref|NP_285388.1| DNA-binding protein HB [Deinococcus radiodurans R1]
 gi|6460544|gb|AAF12250.1|AE001862_76 DNA-binding protein HB [Deinococcus radiodurans R1]
          Length = 137

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 49/89 (55%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV+ ++ + GL++K S   ++++   +  +   G+++ +    T  VK+  +R G
Sbjct: 49  VAKTQLVEMVADQTGLTKKQSEEAISSMLECVVSALQSGKSVGLPGLGTLSVKETAARTG 108

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
               T+++++I   + V FK +S LK  +
Sbjct: 109 VRPGTSEKIQIPAGKKVAFKVASTLKGNL 137


>gi|152965970|ref|YP_001361754.1| histone family protein DNA-binding protein [Kineococcus
          radiotolerans SRS30216]
 gi|151360487|gb|ABS03490.1| histone family protein DNA-binding protein [Kineococcus
          radiotolerans SRS30216]
          Length = 188

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++++V ++    G  RK++T  V  +   I  +  +G+ I IS F TF  + + +R G
Sbjct: 1  MNKTEMVDALETRLG-GRKEATAAVEAVIELIQLTVAKGDKIAISGFGTFEKQARNARTG 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + VKI    V  F+  +  K+ + D
Sbjct: 60 RNPRTGEAVKIKKTSVPRFRPGTAFKEIVSD 90


>gi|261868287|ref|YP_003256209.1| integration host factor subunit beta [Aggregatibacter
          actinomycetemcomitans D11S-1]
 gi|293390072|ref|ZP_06634406.1| integration host factor, beta subunit [Aggregatibacter
          actinomycetemcomitans D7S-1]
 gi|261413619|gb|ACX82990.1| integration host factor, beta subunit [Aggregatibacter
          actinomycetemcomitans D11S-1]
 gi|290950606|gb|EFE00725.1| integration host factor, beta subunit [Aggregatibacter
          actinomycetemcomitans D7S-1]
          Length = 95

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++  + K   +  K     V  +  ++      GE I++  F +F +  +  R+
Sbjct: 1  MTKSELIELLVQKNSNIPVKHVEEAVKAILEQMSYVLEHGERIEVRGFGSFSLHCRQPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++VK+D + V  FKA   L++R+
Sbjct: 61 GRNPKTGEQVKLDAKCVPYFKAGKELRERV 90


>gi|262203103|ref|YP_003274311.1| histone family protein DNA-binding protein [Gordonia bronchialis
          DSM 43247]
 gi|262086450|gb|ACY22418.1| histone family protein DNA-binding protein [Gordonia bronchialis
          DSM 43247]
          Length = 193

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++K+    RK +T  V  + + I  +  +GE++ I+ F  F  +++  RV 
Sbjct: 1  MNKAELIDELTKKLDADRKTATEAVELIVDTIVRAVNKGESVTITGFGVFEKRRRAPRVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + VK+    V  F+  +  K
Sbjct: 61 RNPRTGETVKVRATSVPAFRPGAQFK 86


>gi|148259931|ref|YP_001234058.1| histone family protein DNA-binding protein [Acidiphilium cryptum
          JF-5]
 gi|326403115|ref|YP_004283196.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301]
 gi|146401612|gb|ABQ30139.1| histone family protein DNA-binding protein [Acidiphilium cryptum
          JF-5]
 gi|325049976|dbj|BAJ80314.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301]
          Length = 87

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 45/85 (52%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DLV  ++++  LS+  +T  V  +F  I ++  R E +++  F TF   ++ +  GRN +
Sbjct: 2  DLVADVAEKTDLSKAKATEVVDAVFAAIEEALKRKEEVRLVGFGTFGTAERKAATGRNPR 61

Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93
          T +E++I     V FK    LK  +
Sbjct: 62 TGEEIQIAASTSVRFKPGKSLKDAV 86


>gi|313886631|ref|ZP_07820343.1| DNA-binding protein HU [Porphyromonas asaccharolytica
          PR426713P-I]
 gi|332299532|ref|YP_004441453.1| histone family protein DNA-binding protein [Porphyromonas
          asaccharolytica DSM 20707]
 gi|312923927|gb|EFR34724.1| DNA-binding protein HU [Porphyromonas asaccharolytica
          PR426713P-I]
 gi|332176595|gb|AEE12285.1| histone family protein DNA-binding protein [Porphyromonas
          asaccharolytica DSM 20707]
          Length = 91

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 48/85 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D +K+++ +  L++KD+      +   I +   +GE + +  F +F+V ++ +R G
Sbjct: 1  MNKTDFIKTVADKAQLTQKDTKAVYEAMVETIHEEMKKGERLTLVGFGSFYVSERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N Q+ + ++I   + + FK S+ L
Sbjct: 61 INPQSGKTIQIKASKSIKFKPSTAL 85


>gi|257125480|ref|YP_003163594.1| histone family protein DNA-binding protein [Leptotrichia buccalis
          C-1013-b]
 gi|257049419|gb|ACV38603.1| histone family protein DNA-binding protein [Leptotrichia buccalis
          C-1013-b]
          Length = 93

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 43/71 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++ + V + +K  G ++K +   V    + + +S ++G++++   + TF VK++ +R G
Sbjct: 1  MSKKEFVDAYAKATGETKKRAEELVNQFLDTVEESLLKGDSVQFVGWGTFEVKERAARTG 60

Query: 65 RNLQTNQEVKI 75
           N QT +E++I
Sbjct: 61 INPQTKEEIQI 71


>gi|327250473|gb|EGE62183.1| DNA-binding protein HU-alpha [Escherichia coli STEC_7v]
          Length = 90

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%)

Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV 73
          I+++  LS+  +   + +    I +S   G+A+++  F TF V  +  R GRN QT +E+
Sbjct: 10 IAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEI 69

Query: 74 KIDPRRVVVFKASSILK 90
          KI    V  F +   LK
Sbjct: 70 KIAAANVPAFVSGKALK 86


>gi|255011482|ref|ZP_05283608.1| putative DNA-binding protein HU [Bacteroides fragilis 3_1_12]
 gi|313149304|ref|ZP_07811497.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
 gi|313138071|gb|EFR55431.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
          Length = 95

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 46/82 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D++  IS+E G+ RK     +      + D+  RG ++ +  F TF +K++ ++  
Sbjct: 1  MTKADIINRISEEQGIDRKTVALVIEGFMKCVKDALGRGRSVFLRGFGTFSLKKRAAKKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          +N+Q +  + I  R+V  FK S
Sbjct: 61 QNIQQHITICIPTRKVPHFKPS 82


>gi|3913404|sp|Q45722|DBH_BORTU RecName: Full=DNA-binding protein HBbu
 gi|1280607|gb|AAC73104.1| histone-like protein HBbu [Borrelia turicatae]
          Length = 108

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           +T+SD+V  IS         L +K     V   F E+ +S      I+  SF TF + K+
Sbjct: 9   VTKSDIVNQISLNIKNSNEKLEKKYIRLVVDAFFEELKNSLCLNNVIEFRSFGTFELRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG +  RN QT + V +D   V  F+    LK+R+ 
Sbjct: 69  KGRQNARNPQTGEYVNVDDHHVAYFRPGKDLKERVW 104


>gi|302878375|ref|YP_003846939.1| integration host factor, beta subunit [Gallionella
          capsiferriformans ES-2]
 gi|302581164|gb|ADL55175.1| integration host factor, beta subunit [Gallionella
          capsiferriformans ES-2]
          Length = 93

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDL+  +++    L  KD+   V  + + +  +  RG  ++I  F +F +  +  R 
Sbjct: 1  MTRSDLIARLAELHPQLLAKDAEMAVKVILDALSSTLSRGGRVEIRGFGSFGLNYRPPRQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  +V +  + V  FKA   L++R+
Sbjct: 61 GRNPKTGDKVGVPAKYVPHFKAGKDLRERV 90


>gi|237716500|ref|ZP_04546981.1| DNA-binding protein HU [Bacteroides sp. D1]
 gi|237720681|ref|ZP_04551162.1| DNA-binding protein HU [Bacteroides sp. 2_2_4]
 gi|294645092|ref|ZP_06722818.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a]
 gi|229444147|gb|EEO49938.1| DNA-binding protein HU [Bacteroides sp. D1]
 gi|229449516|gb|EEO55307.1| DNA-binding protein HU [Bacteroides sp. 2_2_4]
 gi|292639598|gb|EFF57890.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a]
          Length = 90

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/84 (22%), Positives = 43/84 (51%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          +    +++  G + KD++  + +L + +      G  I +  F +F VK+K  R+  N  
Sbjct: 5  EFTSELAERLGYTIKDTSELIGSLLSSMTQELEEGNVIAVQGFGSFEVKKKAERISINPA 64

Query: 69 TNQEVKIDPRRVVVFKASSILKKR 92
          + Q + + P+ V+ ++ S+ LK +
Sbjct: 65 SKQRMLVPPKLVLSYRPSNTLKDK 88


>gi|213021940|ref|ZP_03336387.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. 404ty]
          Length = 85

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 42/84 (50%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          ++  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R GRN QT
Sbjct: 1  MIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQT 60

Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93
           +E+KI    V  F +   LK  +
Sbjct: 61 GKEIKIAAANVPAFVSGKALKDAV 84


>gi|330813819|ref|YP_004358058.1| integration host factor alpha subunit [Candidatus Pelagibacter
          sp. IMCC9063]
 gi|327486914|gb|AEA81319.1| integration host factor alpha subunit [Candidatus Pelagibacter
          sp. IMCC9063]
          Length = 93

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 46/87 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  L+  IS    LS+ D+ R    + N I D+    + +KI+ F T+ V ++ +R G
Sbjct: 1  MNKKQLIAKISASMNLSKADAERTFDGITNIILDALKNDDNVKIAGFGTYKVAKRKARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T + ++I   + V F  +  LK+
Sbjct: 61 RNPRTGETIQISASQKVKFLPAKALKE 87


>gi|212692210|ref|ZP_03300338.1| hypothetical protein BACDOR_01706 [Bacteroides dorei DSM 17855]
 gi|212665087|gb|EEB25659.1| hypothetical protein BACDOR_01706 [Bacteroides dorei DSM 17855]
          Length = 90

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D + +++ E GLS+ D+ + V    + +  +   G+ + +  F TF V ++ +R G
Sbjct: 1  MNKADFISAVAAEAGLSKVDAKKAVEAFVSTVTKALKEGDKVSLIGFGTFSVAERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T   + I  ++V  FK  + L   I
Sbjct: 61 INPSTKATITIPAKKVTKFKPGAELADAI 89


>gi|170078570|ref|YP_001735208.1| DNA-binding protein HU [Synechococcus sp. PCC 7002]
 gi|169886239|gb|ACA99952.1| DNA-binding protein HU [Synechococcus sp. PCC 7002]
          Length = 92

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV  ++++ G+S+K +   ++     I ++   G+ + +  F +F  + + +R G
Sbjct: 1  MNKGELVDLVAEKAGISKKQADSVISATVEAIMETVANGDKVTLVGFGSFEPRHRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +TN++++I    V  F A    K+ +
Sbjct: 61 RNPKTNEKMQIPATTVPAFSAGKQFKEMV 89


>gi|310780405|ref|YP_003968737.1| histone family protein DNA-binding protein [Ilyobacter polytropus
          DSM 2926]
 gi|309749728|gb|ADO84389.1| histone family protein DNA-binding protein [Ilyobacter polytropus
          DSM 2926]
          Length = 91

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80
          S+ D+ R +      + D    G+ +    +  F V ++ +R+GRN +T +E+KI+ ++V
Sbjct: 18 SKADAERKLDAFLTTVEDVLNDGDDVNFIGWGKFEVAERAARLGRNPKTGEEIKIEAKKV 77

Query: 81 VVFKASSILKKRI 93
          V FKA   L  ++
Sbjct: 78 VKFKAGKKLNDKV 90


>gi|329902901|ref|ZP_08273299.1| DNA-binding protein HU [Oxalobacteraceae bacterium IMCC9480]
 gi|327548565|gb|EGF33226.1| DNA-binding protein HU [Oxalobacteraceae bacterium IMCC9480]
          Length = 91

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+ +  L +  + R + ++ + +  + V G+++++  F  F    +  R G
Sbjct: 1  MNKTELIDAIAADCDLPKTVAQRALESILSNVIQAVVNGDSVQLIGFGAFASGSRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E+KI   + V F A    K  +
Sbjct: 61 RNPRTGEEIKIAAAKTVKFSAGKAFKDAV 89


>gi|313886994|ref|ZP_07820694.1| putative DNA-binding protein HU [Porphyromonas asaccharolytica
          PR426713P-I]
 gi|332299884|ref|YP_004441805.1| histone family protein DNA-binding protein [Porphyromonas
          asaccharolytica DSM 20707]
 gi|312923520|gb|EFR34329.1| putative DNA-binding protein HU [Porphyromonas asaccharolytica
          PR426713P-I]
 gi|332176947|gb|AEE12637.1| histone family protein DNA-binding protein [Porphyromonas
          asaccharolytica DSM 20707]
          Length = 90

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 46/82 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++VKSI+   GL R++  + V    + + ++  +G+ + +  F +F VK++  +  
Sbjct: 1  MTKAEVVKSIADTTGLDRQEVLQVVEAFMDTVKNAMSQGDNVYLRGFGSFVVKERAEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+     + +  R+V  FK S
Sbjct: 61 RNISKQTTIIVPARKVPTFKPS 82


>gi|260170244|ref|ZP_05756656.1| DNA-binding protein HU [Bacteroides sp. D2]
          Length = 90

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/85 (22%), Positives = 43/85 (50%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          +    +++  G + KD++  + +L + +      G  + I  F +F VK+K  R+  N  
Sbjct: 5  EFTSELAERLGYTIKDTSELMNSLLSSMTQELEEGNVVAIQGFGSFEVKKKAERISINPA 64

Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93
          + Q + + P+ V+ ++ S+ LK + 
Sbjct: 65 SKQRMLVPPKLVLSYRPSNTLKDKF 89


>gi|148274118|ref|YP_001223679.1| putative DNA-binding protein HU [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|170783357|ref|YP_001711691.1| DNA-binding protein HU [Clavibacter michiganensis subsp.
          sepedonicus]
 gi|147832048|emb|CAN03021.1| putative DNA-binding protein Hu [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|169157927|emb|CAQ03137.1| DNA-binding protein HU [Clavibacter michiganensis subsp.
          sepedonicus]
          Length = 95

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 45/91 (49%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K++ R++LV +++ E G S+      +  LF+ +  +   G  + I  +  F    + +R
Sbjct: 4  KSLNRTELVAAVAAESGQSQAAVNGVLDALFSTVATNVADGVKVTIPGWVAFEQTARAAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN QT + ++I   + V   A S LK  +
Sbjct: 64 TGRNPQTGEPLEIKASKGVKVSAGSKLKAAV 94


>gi|332666093|ref|YP_004448881.1| histone family protein DNA-binding protein [Haliscomenobacter
          hydrossis DSM 1100]
 gi|332334907|gb|AEE52008.1| histone family protein DNA-binding protein [Haliscomenobacter
          hydrossis DSM 1100]
          Length = 90

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA-IKISSFATFHVKQKGSRV 63
          + + DL+  I++   +++  +T  +  + + I  + ++G+  + +  F TF V ++ +R 
Sbjct: 1  MNKGDLINKIAEGAKITKAQATDALNAVLDSIA-AELKGDGKVTLIGFGTFSVSKRDARS 59

Query: 64 GRNLQTNQEVKIDPRRVVVFK 84
          GRN QT Q + ID ++VV FK
Sbjct: 60 GRNPQTGQTITIDAKKVVKFK 80


>gi|312116028|ref|YP_004013624.1| histone family protein DNA-binding protein [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311221157|gb|ADP72525.1| histone family protein DNA-binding protein [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 126

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 46/89 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T   L   +++  GLS+K +   ++   + I     +G  I+I+   T  V+++ +R G
Sbjct: 38  VTLRQLATEVAEAHGLSQKQANEVLSEAVSSIGKHLKKGARIRIAGLGTLEVRKRAARTG 97

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN  T + ++I   + V F+A+  L + I
Sbjct: 98  RNPATGEAIEIKASKKVAFRAAKDLSESI 126


>gi|118260|sp|P28080|DBHA_VIBPR RecName: Full=DNA-binding protein HU-alpha
 gi|141878|gb|AAA21939.1| histone-like protein [Vibrio proteolyticus]
          Length = 90

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +    + + D+   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLDGVTDALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  E++I    V  F A   LK  +
Sbjct: 61 RNPKTGAEIQIAAANVPAFVAGKALKDAV 89


>gi|167560912|ref|ZP_02353828.1| DNA-binding protein HU-alpha [Burkholderia oklahomensis EO147]
 gi|167571802|ref|ZP_02364676.1| DNA-binding protein HU-alpha [Burkholderia oklahomensis C6786]
          Length = 92

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++ + G S+  +   + TL   I  S  +G+++++  F +F   ++ +R G
Sbjct: 1  MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKSVSKGDSVQLIGFGSFGSGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + +KI   + V F A    K
Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFK 86


>gi|29348239|ref|NP_811742.1| DNA-binding protein HU-beta [Bacteroides thetaiotaomicron
          VPI-5482]
 gi|253569395|ref|ZP_04846805.1| DNA-binding protein HU-beta [Bacteroides sp. 1_1_6]
 gi|298386068|ref|ZP_06995625.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
 gi|29340142|gb|AAO77936.1| DNA-binding protein HU-beta [Bacteroides thetaiotaomicron
          VPI-5482]
 gi|251841414|gb|EES69495.1| DNA-binding protein HU-beta [Bacteroides sp. 1_1_6]
 gi|298261296|gb|EFI04163.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
          Length = 90

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++ E  +S+ D+ + +    + + ++   G+ + +  F TF V ++ +R G
Sbjct: 1  MNKSELISAMAAEAQMSKADAKKALDAFISSVTNAMKAGDKVALVGFGTFSVSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T   + I  ++V  FKA + L   +
Sbjct: 61 INPSTKAAITIPAKKVAKFKAGAELSAAV 89


>gi|328541581|ref|YP_004301691.1| Histone-like DNA-binding protein [Polymorphum gilvum SL003B-26A1]
 gi|326415720|gb|ADZ72782.1| Histone-like DNA-binding protein [Polymorphum gilvum SL003B-26A1]
          Length = 92

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+ E  L++  +   V ++FN+I ++A  G    I SF  F VK    R GR
Sbjct: 3  TTNEIADKIASEQNLTKTQAKAIVESVFNQIAEAAKAGAETSIPSFGKFKVKDTPEREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          N  T   +KI   + + F       K + D + G
Sbjct: 63 NPATGATIKIAASKKLTFTPG----KAVKDALNG 92


>gi|312796427|ref|YP_004029349.1| DNA-binding protein HU [Burkholderia rhizoxinica HKI 454]
 gi|312168202|emb|CBW75205.1| DNA-binding protein HU [Burkholderia rhizoxinica HKI 454]
          Length = 90

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+++  +S+  + R +  L + + ++  +G ++ +  F TF +  + +R G
Sbjct: 1  MNKTELIDHIAEQADISKAAAGRALDALIDGVKETLKKGGSVTLVGFGTFALGTRTARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI+  +V  F+A   LK
Sbjct: 61 RNPRTGAAIKIEAAKVPKFRAGKALK 86


>gi|22124414|ref|NP_667837.1| transcriptional regulator HU subunit alpha [Yersinia pestis KIM
          10]
 gi|45442848|ref|NP_994387.1| transcriptional regulator HU subunit alpha [Yersinia pestis
          biovar Microtus str. 91001]
 gi|51594652|ref|YP_068843.1| transcriptional regulator HU subunit alpha [Yersinia
          pseudotuberculosis IP 32953]
 gi|108809595|ref|YP_653511.1| transcriptional regulator HU subunit alpha [Yersinia pestis
          Antiqua]
 gi|108810400|ref|YP_646167.1| transcriptional regulator HU subunit alpha [Yersinia pestis
          Nepal516]
 gi|145600976|ref|YP_001165052.1| transcriptional regulator HU subunit alpha [Yersinia pestis
          Pestoides F]
 gi|153947801|ref|YP_001402797.1| transcriptional regulator HU subunit alpha [Yersinia
          pseudotuberculosis IP 31758]
 gi|153997235|ref|ZP_02022342.1| DNA-binding protein HU-alpha [Yersinia pestis CA88-4125]
 gi|162418414|ref|YP_001605067.1| transcriptional regulator HU subunit alpha [Yersinia pestis
          Angola]
 gi|165928324|ref|ZP_02224156.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis
          str. F1991016]
 gi|165938152|ref|ZP_02226711.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis
          str. IP275]
 gi|166012045|ref|ZP_02232943.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166214410|ref|ZP_02240445.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|167402421|ref|ZP_02307881.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str.
          UG05-0454]
 gi|167422943|ref|ZP_02314696.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis
          str. MG05-1020]
 gi|167426821|ref|ZP_02318574.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Mediaevalis
          str. K1973002]
 gi|170022612|ref|YP_001719117.1| transcriptional regulator HU subunit alpha [Yersinia
          pseudotuberculosis YPIII]
 gi|186893654|ref|YP_001870766.1| transcriptional regulator HU subunit alpha [Yersinia
          pseudotuberculosis PB1/+]
 gi|218930736|ref|YP_002348611.1| transcriptional regulator HU subunit alpha [Yersinia pestis CO92]
 gi|229837478|ref|ZP_04457640.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Yersinia pestis Pestoides A]
 gi|229839413|ref|ZP_04459572.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229899975|ref|ZP_04515115.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Yersinia pestis biovar Orientalis str. India 195]
 gi|229900576|ref|ZP_04515702.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Yersinia pestis Nepal516]
 gi|270488931|ref|ZP_06206005.1| DNA-binding protein HU [Yersinia pestis KIM D27]
 gi|21957198|gb|AAM84088.1|AE013651_1 DNA-binding protein HU-alpha (HU-2) [Yersinia pestis KIM 10]
 gi|45437714|gb|AAS63264.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Microtus
          str. 91001]
 gi|51587934|emb|CAH19537.1| DNA-binding protein HU-alpha [Yersinia pseudotuberculosis IP
          32953]
 gi|108774048|gb|ABG16567.1| bacterial nucleoid protein HU alpha subunit [Yersinia pestis
          Nepal516]
 gi|108781508|gb|ABG15566.1| bacterial nucleoid protein HU alpha subunit [Yersinia pestis
          Antiqua]
 gi|115349347|emb|CAL22318.1| DNA-binding protein HU-alpha [Yersinia pestis CO92]
 gi|145212672|gb|ABP42079.1| bacterial nucleoid protein HU alpha subunit [Yersinia pestis
          Pestoides F]
 gi|149289343|gb|EDM39422.1| DNA-binding protein HU-alpha [Yersinia pestis CA88-4125]
 gi|152959296|gb|ABS46757.1| DNA-binding protein HU-alpha [Yersinia pseudotuberculosis IP
          31758]
 gi|162351229|gb|ABX85177.1| DNA-binding protein HU-alpha [Yersinia pestis Angola]
 gi|165913813|gb|EDR32431.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis
          str. IP275]
 gi|165919663|gb|EDR36996.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis
          str. F1991016]
 gi|165989040|gb|EDR41341.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166204414|gb|EDR48894.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|166957154|gb|EDR55175.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis
          str. MG05-1020]
 gi|167048201|gb|EDR59609.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str.
          UG05-0454]
 gi|167054203|gb|EDR64028.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Mediaevalis
          str. K1973002]
 gi|169749146|gb|ACA66664.1| histone family protein DNA-binding protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186696680|gb|ACC87309.1| histone family protein DNA-binding protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|229682396|gb|EEO78486.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Yersinia pestis Nepal516]
 gi|229686960|gb|EEO79036.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Yersinia pestis biovar Orientalis str. India 195]
 gi|229695779|gb|EEO85826.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229704166|gb|EEO91177.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Yersinia pestis Pestoides A]
 gi|270337435|gb|EFA48212.1| DNA-binding protein HU [Yersinia pestis KIM D27]
 gi|320013669|gb|ADV97240.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 91

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+ +++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKVQAKAALESTLAAITESLKEGDPVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89


>gi|535709|gb|AAA65948.1| HU protein [Pseudomonas aeruginosa]
          Length = 89

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  +   +  +   G+++ +  F TF VK+  +R G
Sbjct: 1  MNKSELIDAIAASADIPKDVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKEPAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + +KI   ++  FKA   LK  +
Sbjct: 61 RNPQTGKPIKIA-AKIPGFKAGKALKDAV 88


>gi|332711135|ref|ZP_08431069.1| bacterial nucleoid protein Hbs [Lyngbya majuscula 3L]
 gi|332350117|gb|EGJ29723.1| bacterial nucleoid protein Hbs [Lyngbya majuscula 3L]
          Length = 94

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/89 (21%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV  ++++  +++K +   +T     I ++   G+ + +  F +F  +++ +R G
Sbjct: 1  MNKGELVDKVAEKATVTKKQADAVLTATIETIMEAVSEGDKVTLVGFGSFESRERKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T ++++I   +V  F A  + K+R+
Sbjct: 61 RNPKTGEKMEIPATKVPAFSAGKVFKERV 89


>gi|158423235|ref|YP_001524527.1| histone-like DNA-binding protein [Azorhizobium caulinodans ORS
          571]
 gi|158330124|dbj|BAF87609.1| histone-like bacterial DNA-binding protein [Azorhizobium
          caulinodans ORS 571]
          Length = 92

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+++L+ ++++E  L++  +   V   F+ I  +   GE +K+  F +F V  + +R GR
Sbjct: 3  TKNELIAAVAEEAKLTKAAAAAAVDATFDIIAKALKDGEEVKLIGFGSFSVVTRAAREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N +T + VKI   +   F     LK+ + D
Sbjct: 63 NPRTGKPVKIAASKAPKFTPGKGLKEAVND 92


>gi|325274256|ref|ZP_08140370.1| histone family protein DNA-binding protein [Pseudomonas sp.
          TJI-51]
 gi|324100618|gb|EGB98350.1| histone family protein DNA-binding protein [Pseudomonas sp.
          TJI-51]
          Length = 92

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSK +    LV  ++++ GL++ +++  V T+ + I  + V   +I +  F  F V  + 
Sbjct: 1  MSKAV----LVGLVAEKHGLTKAEASEIVNTVLSGIQSALVSQGSISLVGFGVFSVVDRA 56

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +R GRN  T + V +  R+ V F     LK+ +
Sbjct: 57 ARNGRNPNTGEPVTVAARKAVRFTPGEPLKRAV 89


>gi|319763571|ref|YP_004127508.1| histone family protein DNA-binding protein [Alicycliphilus
          denitrificans BC]
 gi|330824228|ref|YP_004387531.1| histone family protein DNA-binding protein [Alicycliphilus
          denitrificans K601]
 gi|317118132|gb|ADV00621.1| histone family protein DNA-binding protein [Alicycliphilus
          denitrificans BC]
 gi|329309600|gb|AEB84015.1| histone family protein DNA-binding protein [Alicycliphilus
          denitrificans K601]
          Length = 90

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+ +  +S+  +TR + +  + +  +  +G  + +  F TF V ++ +R G
Sbjct: 1  MNKSELIEHIASQADISKAAATRALESTIDAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI   +V  F+    LK
Sbjct: 61 RNPRTGATIKIKAAKVPKFRPGKALK 86


>gi|62195080|ref|YP_220427.1| hypothetical protein p49879_2p18 [Leptospirillum ferrooxidans]
 gi|61105596|gb|AAX38515.1| ORF98 [Leptospirillum ferrooxidans]
          Length = 98

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV S+S    LS+KD    +      I  S  +GE + +  F TF   +K +R G
Sbjct: 1  MNKTELVASVSDSSNLSKKDVQAVLDGFLAAIEHSLKKGEKVALVGFGTFETVKKEARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + ++I  R    F A   L+  I
Sbjct: 61 RNPRTGEALEIPARTSPKFSAGKSLRDAI 89


>gi|282881455|ref|ZP_06290129.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1]
 gi|281304681|gb|EFA96767.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1]
          Length = 95

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/89 (21%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + +  +++  G +++ +   V  L   +  +   GEA+ I SF TF +K++  R+ 
Sbjct: 1  MNNKEFIAELAQRCGYTQEKTQNLVNILVEAMASNFDEGEAVSIPSFGTFEIKKRLERIL 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T + + + P+ V+ F+ + ++K+++
Sbjct: 61 VNPSTGKRMMVPPKLVLNFRPTPLVKEQL 89


>gi|255693886|ref|ZP_05417561.1| HimA protein [Bacteroides finegoldii DSM 17565]
 gi|260620291|gb|EEX43162.1| HimA protein [Bacteroides finegoldii DSM 17565]
          Length = 90

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/84 (22%), Positives = 42/84 (50%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          +    +++  G + KD++  + +L   +      G  I +  F +F VK+K  R+  N  
Sbjct: 5  EFTSELAERLGYTIKDTSELINSLLASMTQELEEGNMIAVQGFGSFEVKKKAERISINPA 64

Query: 69 TNQEVKIDPRRVVVFKASSILKKR 92
          + Q + + P+ V+ ++ S+ LK +
Sbjct: 65 SKQRMLVPPKLVLSYRPSNTLKDK 88


>gi|172055154|ref|YP_001806481.1| DNA binding protein HU [Cyanothece sp. ATCC 51142]
 gi|171701435|gb|ACB54415.1| DNA binding protein HU [Cyanothece sp. ATCC 51142]
          Length = 92

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 43/89 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  LVK+I+ E G  +   T+ +      I ++   G+ I +  F TF  + +  R G
Sbjct: 1  MNKEQLVKAIAAETGQPQSVVTKILNATTETIVETVANGDKITLVGFGTFEPRDRKERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +N QT + + I    +  F AS   K+++
Sbjct: 61 KNPQTGEPLTIPATTIPAFSASKAFKEKV 89


>gi|301064005|ref|ZP_07204470.1| integration host factor subunit beta [delta proteobacterium
          NaphS2]
 gi|300441916|gb|EFK06216.1| integration host factor subunit beta [delta proteobacterium
          NaphS2]
          Length = 92

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++++KE  L  + +   V T+F E+  +    E ++I    +F VK      G
Sbjct: 1  MNKSELIEALAKEKDLPLRKAEEVVNTVFGEMEKALTDEERVEIRGLGSFKVKHYDGYKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + +  +++  FK    LK+R+
Sbjct: 61 RNPKTGEIINVGRKKLPFFKVGKELKERV 89


>gi|170698163|ref|ZP_02889242.1| histone family protein DNA-binding protein [Burkholderia
          ambifaria IOP40-10]
 gi|170136928|gb|EDT05177.1| histone family protein DNA-binding protein [Burkholderia
          ambifaria IOP40-10]
          Length = 91

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 41/89 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++S   G  +  +   +  +   +  +  RGEA++I  F +F    +  R G
Sbjct: 1  MNKNELIDAVSATTGAGKAHTETAIDAILQTVTQALARGEAVQIVGFGSFSTGARAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T + + I   + V F A    K  +
Sbjct: 61 RNPATGEAITIAAAKTVKFAAGKAFKDAV 89


>gi|332292782|ref|YP_004431391.1| histone family protein DNA-binding protein [Krokinobacter
          diaphorus 4H-3-7-5]
 gi|332170868|gb|AEE20123.1| histone family protein DNA-binding protein [Krokinobacter
          diaphorus 4H-3-7-5]
          Length = 90

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 48/85 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  +++  G+++  + + + +   ++  +   G  + +  F ++ V ++ +R G
Sbjct: 1  MNKSELIDGMAEHAGITKAAAKKALESFLGDVEKTLKDGGRVSLVGFGSWSVSKRNAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN QT + +KI  + VV FKA S L
Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGSEL 85


>gi|13540991|ref|NP_110679.1| nucleoid DNA-binding protein (HB-related) [Thermoplasma volcanium
          GSS1]
 gi|14324375|dbj|BAB59303.1| DNA-binding protein HU [Thermoplasma volcanium GSS1]
          Length = 90

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 47/83 (56%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          S+L K ++K+   ++K +   + +  +EI   A  G+ I ++ F  F  + +G R  RN 
Sbjct: 5  SELSKDVAKKANTTQKVARTVIKSFLDEIVAQANGGQKINLAGFGIFERRTQGPRKARNP 64

Query: 68 QTNQEVKIDPRRVVVFKASSILK 90
          QT + +++  ++  VF+ASS +K
Sbjct: 65 QTKKVIEVPSKKKFVFRASSKIK 87


>gi|326336370|ref|ZP_08202541.1| integration host factor subunit alpha [Capnocytophaga sp. oral
          taxon 338 str. F0234]
 gi|325691544|gb|EGD33512.1| integration host factor subunit alpha [Capnocytophaga sp. oral
          taxon 338 str. F0234]
          Length = 105

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 43/85 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++V  IS++ G+ + +    V     EI  S  +G+ + +  F +F VK +  + G
Sbjct: 1  MTKAEIVAKISEKLGIEKTEVQNTVEHFMEEIKASLEKGDNVYLRGFGSFIVKARAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  + I    +  FK + + 
Sbjct: 61 RNISKNTTITIPAHNIPAFKPAKVF 85


>gi|332529106|ref|ZP_08405070.1| histone family protein DNA-binding protein [Hylemonella gracilis
          ATCC 19624]
 gi|332041329|gb|EGI77691.1| histone family protein DNA-binding protein [Hylemonella gracilis
          ATCC 19624]
          Length = 90

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+K   +S+  +TR + ++   +  +  +G ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIAKNADISKAAATRALESVIGAVKTTLKKGGSVSLVGFGTFAVTKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI   ++  F+    LK
Sbjct: 61 RNPRTGDTIKIKAAKLPKFRPGKALK 86


>gi|159036797|ref|YP_001536050.1| histone family protein DNA-binding protein [Salinispora arenicola
          CNS-205]
 gi|157915632|gb|ABV97059.1| histone family protein DNA-binding protein [Salinispora arenicola
          CNS-205]
          Length = 209

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++S++   G  RK +T  +  +  E+  +  +GE + I+ F  F  + +G+R  
Sbjct: 1  MNKAELIESLAVRLG-DRKTATAALDAVLTEVQAAVTKGEKVSITGFGAFEKRVRGARTA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + VK+    V  F+  +  K+ +
Sbjct: 60 RNPRTGEAVKVKKTSVPTFRPGTGFKEMV 88


>gi|83858753|ref|ZP_00952275.1| Histone-like DNA-binding protein [Oceanicaulis alexandrii
          HTCC2633]
 gi|83853576|gb|EAP91428.1| Histone-like DNA-binding protein [Oceanicaulis alexandrii
          HTCC2633]
          Length = 88

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L K+I+ + G+++  ++  +    + I  +A   ++++++ F TFH K + +R  
Sbjct: 1  MNKSELAKAIADKAGITKAQASDAIDAFADAIVGAAKSNDSVQLAGFGTFHAKHREAREV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +++    +  + F+ +S LK
Sbjct: 61 RNPRTGEKMMSKAKTQLAFRPASALK 86


>gi|227875778|ref|ZP_03993906.1| DNA-binding protein HU [Mobiluncus mulieris ATCC 35243]
 gi|306819051|ref|ZP_07452768.1| DNA-binding protein HU [Mobiluncus mulieris ATCC 35239]
 gi|227843720|gb|EEJ53901.1| DNA-binding protein HU [Mobiluncus mulieris ATCC 35243]
 gi|304648244|gb|EFM45552.1| DNA-binding protein HU [Mobiluncus mulieris ATCC 35239]
          Length = 93

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R++LV  I+K   LS+ ++   ++   + + +S  +GE +K++         + +R 
Sbjct: 2  SVNRTELVAEIAKRAALSKTEADAALSAFQDILIESLKKGETVKVTGLMNVERVSRAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+KI     V   A S LKK +
Sbjct: 62 GRNPRTGEEIKIPAGFGVKISAGSTLKKAV 91


>gi|325288078|ref|YP_004263868.1| histone family protein DNA-binding protein [Cellulophaga lytica
          DSM 7489]
 gi|324323532|gb|ADY30997.1| histone family protein DNA-binding protein [Cellulophaga lytica
          DSM 7489]
          Length = 90

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 50/85 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ + G+++  + + + +    +  S  +G+ + +  F ++ V ++ +R G
Sbjct: 1  MNKTELIDAMAADAGITKAAAKKALESFLGNVEGSLKKGDRVSLVGFGSWSVTRREARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN QT + +KI  + VV FKA + L
Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGTEL 85


>gi|288819045|ref|YP_003433393.1| integration host factor beta subunit [Hydrogenobacter
          thermophilus TK-6]
 gi|288788445|dbj|BAI70192.1| integration host factor beta subunit [Hydrogenobacter
          thermophilus TK-6]
 gi|308752628|gb|ADO46111.1| histone family protein DNA-binding protein [Hydrogenobacter
          thermophilus TK-6]
          Length = 98

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 48/91 (52%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K + +S++   ISKE+ +  + +   V  +F+ I         ++I  F  F ++++G R
Sbjct: 4  KKVKKSEIASKISKEYQIPLELAKSLVEGVFSWIVQKTAEDGRVEIRGFGVFKLRRRGGR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            +N +T  E+ ++ R ++ FK S  L KR+
Sbjct: 64 FTKNPKTGIEMYVEERYLMSFKPSKKLLKRL 94


>gi|52421248|ref|YP_087160.1| DNA binding protein HU [Bacteroides fragilis YCH46]
 gi|52218769|dbj|BAD51361.1| DNA binding protein HU [Bacteroides fragilis YCH46]
          Length = 90

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+K ++ E G   KD  + + T   E+ +  V  E + I  F TF    + +R+ 
Sbjct: 1  MNKKDLIKVVATETGFPMKDVQKTIDTFLKELSEE-VNKEDVAIKDFGTFKTVIQKARIA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN  T + V++  ++V+ FK S
Sbjct: 60 RNPATGELVEVPEKKVLKFKPS 81


>gi|226939799|ref|YP_002794872.1| integration host factor, beta subunit [Laribacter hongkongensis
          HLHK9]
 gi|254803536|sp|C1D546|IHFB_LARHH RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226714725|gb|ACO73863.1| integration host factor, beta subunit [Laribacter hongkongensis
          HLHK9]
          Length = 99

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  +++ +  L  KD+   V T+ + +  S   G+ I+I  F +F +  +  R 
Sbjct: 1  MTKSELIARLAERYPHLVAKDTELAVKTILDAMAVSLASGQRIEIRGFGSFDLNYRPPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++   V +  + V  FKA   L++R+
Sbjct: 61 GRNPKSGSSVHVPEKFVPHFKAGKELRERV 90


>gi|182414469|ref|YP_001819535.1| histone family protein DNA-binding protein [Opitutus terrae
          PB90-1]
 gi|177841683|gb|ACB75935.1| histone family protein DNA-binding protein [Opitutus terrae
          PB90-1]
          Length = 102

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS  +T+ ++V  I K+ G  +K     V    + I  +   G  +++ +F    V+ + 
Sbjct: 1  MSTNLTKREIVLEIYKKTGFPQKQVVESVQLTLDIIQKALAEGRNVELRNFGVLEVQVRK 60

Query: 61 SRVGRNL-QTNQEVKIDPRRVVVFKASSILKKRI 93
          +R+GRN  +   EV I  R VV FK+  ILK+++
Sbjct: 61 ARIGRNPNKPEAEVVIPQRAVVKFKSGKILKQQL 94


>gi|58979591|gb|AAW83460.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979595|gb|AAW83462.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979599|gb|AAW83464.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979613|gb|AAW83471.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979615|gb|AAW83472.1| DNA-binding protein HU [Campylobacter upsaliensis]
          Length = 98

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 43/80 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+      + + I +   +G++I    F TF   ++ +R  
Sbjct: 1  MTKADFISQVAQNAGLTKKDAGAATDAVISTITEVLAKGDSISFIGFGTFSTTERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFK 84
          R   T + +K+   RVV FK
Sbjct: 61 RVPSTGKTIKVPATRVVKFK 80


>gi|254166674|ref|ZP_04873528.1| DNA-binding protein HU [Aciduliprofundum boonei T469]
 gi|254168488|ref|ZP_04875332.1| DNA-binding protein HU [Aciduliprofundum boonei T469]
 gi|289596099|ref|YP_003482795.1| histone family protein DNA-binding protein [Aciduliprofundum
          boonei T469]
 gi|197622543|gb|EDY35114.1| DNA-binding protein HU [Aciduliprofundum boonei T469]
 gi|197624284|gb|EDY36845.1| DNA-binding protein HU [Aciduliprofundum boonei T469]
 gi|289533886|gb|ADD08233.1| histone family protein DNA-binding protein [Aciduliprofundum
          boonei T469]
          Length = 89

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 47/83 (56%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          S+L K+++K+ G+S+K +   +    +E+ D   +G  + +  F  F  + + +R  RN 
Sbjct: 5  SELAKTVAKKTGVSQKQARMVIRAFVDEVIDQVNKGNKVNLVGFGIFERRVQKARKARNP 64

Query: 68 QTNQEVKIDPRRVVVFKASSILK 90
          +T + + +  ++  VF+ASS +K
Sbjct: 65 RTKEVINVPEKKKFVFRASSKIK 87


>gi|16273140|ref|NP_439377.1| integration host factor subunit beta [Haemophilus influenzae Rd
          KW20]
 gi|260581140|ref|ZP_05848960.1| integration host factor, beta subunit [Haemophilus influenzae
          RdAW]
 gi|1170525|sp|P43724|IHFB_HAEIN RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|1574152|gb|AAC22874.1| integration host factor, beta-subunit (himD) [Haemophilus
          influenzae Rd KW20]
 gi|260092168|gb|EEW76111.1| integration host factor, beta subunit [Haemophilus influenzae
          RdAW]
          Length = 94

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ +S K+  L  K+    V  +   I  S   G+ +++  F +F +  +  R+
Sbjct: 1  MTKSELMEKLSAKQPTLPAKEIENMVKGILEFISQSLENGDRVEVRGFGSFSLHHRQPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  + V  FKA   LK R+
Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARV 90


>gi|308271765|emb|CBX28373.1| DNA-binding protein HU 1 [uncultured Desulfobacterium sp.]
          Length = 107

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + ++DLV  ++     + K++   V  +F  +  +   G+ +K++ F TF VK++ +R
Sbjct: 16 ENMNKTDLVNEVAAIVS-NTKEAKAVVDCIFTSMTAALKNGDEVKLAGFGTFKVKERKAR 74

Query: 63 VGRNLQTNQEVKID 76
           GRN +T +E+KID
Sbjct: 75 TGRNPKTGEEIKID 88


>gi|124514774|gb|EAY56286.1| putative integration host factor, alpha subunit HimA like
          [Leptospirillum rubarum]
 gi|206602432|gb|EDZ38913.1| putative integration host factor, alpha subunit HimA-like
          [Leptospirillum sp. Group II '5-way CG']
          Length = 98

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 6/89 (6%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFN----EICDSAVRGEAIKISSFATFHVKQKGSR 62
          R D+V+ I ++   SR  + +FV  +F+    EI  +   GE +KI+ F TF V++   R
Sbjct: 3  RLDIVQRILEKPEYSRY-TAKFVGQIFDGILEEISATLENGEDVKITGFGTFIVRKINDR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKAS-SILK 90
           GRN +T + V I     V+F  S S+LK
Sbjct: 62 PGRNPKTGEPVLIPAHHTVLFHPSRSLLK 90


>gi|17548076|ref|NP_521478.1| histone-like DNA-binding protein HU-beta (NS1) [Ralstonia
          solanacearum GMI1000]
 gi|17430382|emb|CAD17147.1| probable histone-like dna-binding protein hu-beta (ns1)
          [Ralstonia solanacearum GMI1000]
          Length = 92

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++L+ +I+    GL++  + + +      I +S   G+ + +  F TF   ++  R+
Sbjct: 1  MTKTELIDAIASGVDGLTKAKAEQALNVTLQAIMESVGNGDTVSLIGFGTFSQGERAERM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T +E+K++  + V FKA    K  +
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAV 90


>gi|238063255|ref|ZP_04607964.1| histone family protein DNA-binding protein [Micromonospora sp. ATCC
           39149]
 gi|237885066|gb|EEP73894.1| histone family protein DNA-binding protein [Micromonospora sp. ATCC
           39149]
          Length = 241

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L+++++   G  R+ +T  +  +  E+  +  +GE + I+ F  F  + +G+R  
Sbjct: 18  VNKAELIEALAVRLG-DRRTATAALDAVLAEVQAAVTKGEKVAITGFGAFEKRVRGARTA 76

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T + VK+    V  F+A +  K+ +
Sbjct: 77  RNPRTGEAVKVKKTSVPTFRAGAGFKEMV 105


>gi|150005930|ref|YP_001300674.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482]
 gi|149934354|gb|ABR41052.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482]
          Length = 94

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L K IS + G   +     V +L  E+ +S  +GE + +  F +F VKQ+  +  
Sbjct: 1  MTKAELCKKISAKTGCDAQTILAVVESLMVEVKESLEKGENVYLRGFGSFIVKQRAEKTT 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN+  N  + I    +  FK S  L K +
Sbjct: 61 RNISKNTTIIIPAHNIPAFKPSKELVKLV 89


>gi|145629273|ref|ZP_01785072.1| integration host factor beta-subunit [Haemophilus influenzae
          22.1-21]
 gi|145633319|ref|ZP_01789050.1| hypothetical protein CGSHi3655_03781 [Haemophilus influenzae
          3655]
 gi|145634450|ref|ZP_01790160.1| hypothetical protein CGSHiAA_06654 [Haemophilus influenzae
          PittAA]
 gi|145636917|ref|ZP_01792582.1| hypothetical protein CGSHiHH_01512 [Haemophilus influenzae
          PittHH]
 gi|145641112|ref|ZP_01796693.1| integration host factor beta-subunit [Haemophilus influenzae
          R3021]
 gi|148827069|ref|YP_001291822.1| integration host factor subunit beta [Haemophilus influenzae
          PittGG]
 gi|166918549|sp|A5UF83|IHFB_HAEIG RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|144978776|gb|EDJ88499.1| integration host factor beta-subunit [Haemophilus influenzae
          22.1-21]
 gi|144986165|gb|EDJ92755.1| hypothetical protein CGSHi3655_03781 [Haemophilus influenzae
          3655]
 gi|145268430|gb|EDK08424.1| hypothetical protein CGSHiAA_06654 [Haemophilus influenzae
          PittAA]
 gi|145269998|gb|EDK09936.1| hypothetical protein CGSHiHH_01512 [Haemophilus influenzae
          PittHH]
 gi|145274273|gb|EDK14138.1| integration host factor beta-subunit [Haemophilus influenzae
          22.4-21]
 gi|148718311|gb|ABQ99438.1| hypothetical protein CGSHiGG_01900 [Haemophilus influenzae
          PittGG]
 gi|301169962|emb|CBW29566.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Haemophilus influenzae 10810]
          Length = 94

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ +S K+  L  K+    V  +   I  S   G+ +++  F +F +  +  R+
Sbjct: 1  MTKSELMEKLSAKQPTLPAKEIENMVKDILEFISQSLENGDRVEVRGFGSFSLHHRQPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  + V  FKA   LK R+
Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARV 90


>gi|157964859|ref|YP_001499683.1| integration host factor alpha-subunit [Rickettsia massiliae MTU5]
 gi|157844635|gb|ABV85136.1| Integration host factor alpha-subunit [Rickettsia massiliae MTU5]
          Length = 119

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 1/95 (1%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           TIT+  +   +S + G S       V T+F+ I + A + + + + +F +F VKQ+  R 
Sbjct: 26  TITKKKIAAMLSSKLGFSNSLCEEIVHTVFSNILEIA-KEQKLTLKNFGSFEVKQQNPRP 84

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           G N  T   V I+ ++ + F  SS LK  I +  R
Sbjct: 85  GINFYTKAPVIIESKKHLRFVPSSKLKALINESTR 119


>gi|260222772|emb|CBA32664.1| Integration host factor subunit beta [Curvibacter putative
          symbiont of Hydra magnipapillata]
          Length = 103

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RSDL+  ++  F  + +KD+   V  +F+E+ ++ V+G  I+I +F     + + S  
Sbjct: 1  MNRSDLINQLANRFNEIDKKDTELAVRLIFDEMANALVKGRRIEIRNFGILQARTRPSTT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T +++K    R + FK    L+ R+
Sbjct: 61 YRNPRTGEKLKRRSTRSIRFKEGKELRSRM 90


>gi|149190645|ref|ZP_01868913.1| bacterial nucleoid DNA-binding protein [Vibrio shilonii AK1]
 gi|148835528|gb|EDL52497.1| bacterial nucleoid DNA-binding protein [Vibrio shilonii AK1]
          Length = 90

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +    + + ++   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLSGVSEALTEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E++I    V  F A   LK  +
Sbjct: 61 RNPKTGEEIQIAAANVPAFVAGKALKDAV 89


>gi|34499324|ref|NP_903539.1| DNA-binding protein HU-beta [Chromobacterium violaceum ATCC
          12472]
 gi|34105175|gb|AAQ61531.1| probable DNA-binding protein hu-beta [Chromobacterium violaceum
          ATCC 12472]
          Length = 89

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L+  +S + GL++ D  R +      + D+      I I +   F VK+  +R G
Sbjct: 1  MTKAELIALLSDKSGLTKADVLRVLGAFDEVLLDTLADNGEISIVA-GKFKVKETAARTG 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + ++I  +R V F AS  LK RI
Sbjct: 60 RNPKTGETIQIAAKRKVSFVASKQLKDRI 88


>gi|269958037|ref|YP_003327826.1| histone family protein DNA-binding protein [Xylanimonas
          cellulosilytica DSM 15894]
 gi|269306718|gb|ACZ32268.1| histone family protein DNA-binding protein [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 93

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 51/92 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ +S+LV +I+ +  L++  +   +      + +S  +GEA+K++   +    ++ +R 
Sbjct: 2  SLNKSELVSAIAAKSELTKAQAEDALNAFQEVLVESLAKGEAVKLTGLLSIERVERAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +E++I     V   A S+LKK + +
Sbjct: 62 GRNPRTGEEIQIPAGFGVKVSAGSVLKKAVSE 93


>gi|145351643|ref|XP_001420178.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580411|gb|ABO98471.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 115

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ L+  ++KE G ++    R +    + I  +   G+ + +S F TF  KQ+ +R G
Sbjct: 23  LNKTTLIDHVAKETGETKASVGRVLNATLDAISATVRAGDKVALSKFGTFARKQRKARDG 82

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           RN  T   +KI       F ASS  K    D ++G+K
Sbjct: 83  RNPLTGAALKIPAANYPSFSASSTFK----DLVKGKK 115


>gi|303327383|ref|ZP_07357824.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3]
 gi|302862323|gb|EFL85256.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3]
          Length = 90

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV+ I+ +  L++  + R +      + DS  +   + ++ F TF V+ + +R G
Sbjct: 1  MTKADLVEKIAAKANLTKAAAERALNAFLASVEDSLSKEAKLTLTGFGTFAVESRKARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   + I   ++V F+   +LK
Sbjct: 61 RNPRTGATLTIPACKMVKFRPGKMLK 86


>gi|161870175|ref|YP_001599345.1| integration host factor subunit beta [Neisseria meningitidis
          053442]
 gi|161595728|gb|ABX73388.1| integration host factor beta-subunit [Neisseria meningitidis
          053442]
          Length = 95

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 40/74 (54%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
          L  KD    V  L + +  S  RG+ I+I  F +F +  + +R+GRN +T + V++  + 
Sbjct: 13 LLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNPKTGERVEVPEKH 72

Query: 80 VVVFKASSILKKRI 93
          V  FK    L++R+
Sbjct: 73 VPHFKPGKELRERV 86


>gi|226357673|ref|YP_002787412.1| DNA-binding protein HU (Histone-like protein) [Deinococcus deserti
           VCD115]
 gi|226319915|gb|ACO47908.1| putative DNA-binding protein HU (Histone-like protein) [Deinococcus
           deserti VCD115]
          Length = 121

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 47/86 (54%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           I ++ +V  I+   GL++K S   V+ +   I ++   G+++ +    T  V++  +R G
Sbjct: 33  IGKTQMVDMIADRAGLTKKQSEEVVSVMLESIVEAVRSGKSVGLPGLGTLSVRETAARTG 92

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILK 90
               T+++++I   + + FKA++ LK
Sbjct: 93  VRPGTSEKIQIAAGKKLAFKAATTLK 118


>gi|254506390|ref|ZP_05118532.1| DNA-binding protein HU-alpha [Vibrio parahaemolyticus 16]
 gi|219550564|gb|EED27547.1| DNA-binding protein HU-alpha [Vibrio parahaemolyticus 16]
          Length = 90

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +    + + D+   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLDGVTDALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E++I    V  F +   LK  +
Sbjct: 61 RNPKTGEEIQIAAANVPAFVSGKALKDAV 89


>gi|332886429|gb|EGK06673.1| hypothetical protein HMPREF9456_00547 [Dysgonomonas mossii DSM
          22836]
          Length = 88

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 46/85 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+++ GLS+ DS + +      + +   +   + +  F TF V QK +R G
Sbjct: 1  MNKTELINAIAEKSGLSKVDSKKALEAFIESVTEEVKKDGKVALVGFGTFSVTQKAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N +T   + I  ++ V FKA + L
Sbjct: 61 INPRTKAVINIPAKKTVKFKAGADL 85


>gi|209696250|ref|YP_002264180.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238]
 gi|208010203|emb|CAQ80530.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238]
          Length = 90

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+ +I+++  LS+  +   +      +  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDAIAEKADLSKAQAKAALEATLEGVTGALKDGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E++I    V  F A   LK+ +
Sbjct: 61 RNPKTGEEIQIKAANVPAFVAGKALKESV 89


>gi|222480977|ref|YP_002567214.1| histone family protein DNA-binding protein [Halorubrum
           lacusprofundi ATCC 49239]
 gi|222453879|gb|ACM58144.1| histone family protein DNA-binding protein [Halorubrum
           lacusprofundi ATCC 49239]
          Length = 206

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 19  GLSRKDSTRFVTTLFNEICDSAVRGEAIKIS-------SFATFHVKQKGSRVGRNLQTNQ 71
           GLS  D+   +    N    +  +G+ + +         F TF + ++ +R GRN QT +
Sbjct: 124 GLSEDDAKWALEAFINATTKALKKGDRLSLGEEEDENKGFGTFSISKRSARTGRNPQTGK 183

Query: 72  EVKIDPRRVVVFKASSILKKRI 93
           E++I  + VV FKA + L K +
Sbjct: 184 EIQIAAKNVVKFKAGAELSKAV 205


>gi|170288480|ref|YP_001738718.1| histone family protein DNA-binding protein [Thermotoga sp. RQ2]
 gi|7245986|pdb|1B8Z|A Chain A, Hu From Thermotoga Maritima
 gi|7245987|pdb|1B8Z|B Chain B, Hu From Thermotoga Maritima
 gi|388071|gb|AAA27416.1| Hu DNA-binding protein [Thermotoga maritima]
 gi|170175983|gb|ACB09035.1| histone family protein DNA-binding protein [Thermotoga sp. RQ2]
          Length = 90

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  ++K+ G  +KD    + T+   I ++  +GE ++I  F +F V++  +R G
Sbjct: 1  MNKKELIDRVAKKAGAKKKDVKLILDTILETITEALAKGEKVQIVGFGSFEVRKAAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N QT + + I  R+V  FK    LK+++
Sbjct: 61 VNPQTRKPITIPERKVPKFKPGKALKEKV 89


>gi|284007585|emb|CBA73152.1| integration host factor beta-subunit [Arsenophonus nasoniae]
          Length = 106

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 4   TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           T+TRS+L++ +  +   +  K     V  + + +  +  +GE I+I  F +F +  +  R
Sbjct: 12  TMTRSELIERLINQLAHIPAKLIEEAVKEMLDHMAITLAKGERIEIRGFGSFSLHYRAPR 71

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           +GRN +T  +V +  + V  FK    L+ R+
Sbjct: 72  IGRNPKTGDKVDLKGKHVPHFKPGKELRDRV 102


>gi|187918104|ref|YP_001883667.1| DNA-binding protein HbbU [Borrelia hermsii DAH]
 gi|119860952|gb|AAX16747.1| DNA-binding protein HbbU [Borrelia hermsii DAH]
          Length = 108

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           +T+SD+V  IS         L +K     V   F E+ +S      I+  SF TF + K+
Sbjct: 9   VTKSDIVDQISLNIKNSNERLEKKYIRLVVDAFFEELKNSLCLNNIIEFRSFGTFELRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG +  RN QT + V +D   V  F+    LK+R+ 
Sbjct: 69  KGRQNARNPQTGEYVNVDDHHVAYFRPGKDLKERVW 104


>gi|299065160|emb|CBJ36324.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Ralstonia
          solanacearum CMR15]
          Length = 92

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++L+ +I+    GL++  + + +      I +S   G+ + +  F TF   ++  R+
Sbjct: 1  MTKTELIDAIASGVDGLTKAKAEQALNVTLQAIMESVGSGDTVSLIGFGTFSQGERAERM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T +E+K++  + V FKA    K  +
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAV 90


>gi|194098875|ref|YP_002001939.1| integration host factor subunit beta [Neisseria gonorrhoeae
          NCCP11945]
 gi|240115896|ref|ZP_04729958.1| integration host factor subunit beta [Neisseria gonorrhoeae
          PID18]
 gi|260440289|ref|ZP_05794105.1| integration host factor subunit beta [Neisseria gonorrhoeae DGI2]
 gi|193934165|gb|ACF29989.1| integration host factor beta-subunit [Neisseria gonorrhoeae
          NCCP11945]
          Length = 92

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 40/74 (54%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
          L  KD    V  L + +  S  RG+ I+I  F +F +  + +R+GRN +T + V++  + 
Sbjct: 16 LLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNPKTGERVEVPEKH 75

Query: 80 VVVFKASSILKKRI 93
          V  FK    L++R+
Sbjct: 76 VPHFKPGKELRERV 89


>gi|53715708|ref|YP_101700.1| HU family DNA-binding protein [Bacteroides fragilis YCH46]
 gi|60683646|ref|YP_213790.1| putative histone-like DNA-binding protein HU4 [Bacteroides
          fragilis NCTC 9343]
 gi|253566476|ref|ZP_04843929.1| HU family DNA-binding protein [Bacteroides sp. 3_2_5]
 gi|265767345|ref|ZP_06095011.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_16]
 gi|52218573|dbj|BAD51166.1| DNA binding protein HU family [Bacteroides fragilis YCH46]
 gi|60495080|emb|CAH09899.1| putative histone-like DNA-binding protein HU4 [Bacteroides
          fragilis NCTC 9343]
 gi|251944648|gb|EES85123.1| HU family DNA-binding protein [Bacteroides sp. 3_2_5]
 gi|263252650|gb|EEZ24162.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_16]
 gi|301165158|emb|CBW24728.1| putative histone-like DNA-binding protein HU4 [Bacteroides
          fragilis 638R]
          Length = 96

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 44/79 (55%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DL++SI+ +  L ++     V  +   I ++  +GE++ +  F TF VK++ +R G NL 
Sbjct: 5  DLIRSIAVKSNLKKEQIAIVVEGVMEAIAEALHQGESVTLVGFGTFEVKERKARKGYNLS 64

Query: 69 TNQEVKIDPRRVVVFKASS 87
          T + + I  ++ V FK  +
Sbjct: 65 TGEIMTIPGKKTVRFKPGA 83


>gi|152966297|ref|YP_001362081.1| histone family protein DNA-binding protein [Kineococcus
          radiotolerans SRS30216]
 gi|151360814|gb|ABS03817.1| histone family protein DNA-binding protein [Kineococcus
          radiotolerans SRS30216]
          Length = 185

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++++V ++    G  RK++T  V  +   I  +  +G+ I IS F TF  + + +R G
Sbjct: 1  MNKAEMVDALETRLG-GRKEATTAVEAVIELIQLTVAKGDKIAISGFGTFEKQVRNARTG 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + VKI    V  F+  +  K+ + D
Sbjct: 60 RNPRTGEAVKIKKTSVPRFRPGTAFKEVVSD 90


>gi|222824223|ref|YP_002575797.1| DNA-binding protein HU [Campylobacter lari RM2100]
 gi|58979407|gb|AAW83368.1| DNA-binding protein HU [Campylobacter lari]
 gi|58979429|gb|AAW83379.1| DNA-binding protein HU [Campylobacter lari]
 gi|222539445|gb|ACM64546.1| DNA-binding protein HU [Campylobacter lari RM2100]
          Length = 100

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 41/80 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+      +   I D   +G++I    F TF V ++ +R  
Sbjct: 1  MTKADFISQVAQTAGLTKKDAGAATDAVIATITDVLAKGDSISFIGFGTFSVAERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFK 84
          R   T   +K+   +V  FK
Sbjct: 61 RVPSTGATIKVPATKVAKFK 80


>gi|260592454|ref|ZP_05857912.1| putative integration host factor IHF alpha subunit [Prevotella
          veroralis F0319]
 gi|260535500|gb|EEX18117.1| putative integration host factor IHF alpha subunit [Prevotella
          veroralis F0319]
          Length = 376

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+KT+ +  +  +++K++ LS  D   FV T F  I D   +G  +KI    TF V++  
Sbjct: 1  MAKTVIQI-IASALAKQYKLSAADGATFVDTFFAIISDELKKGNQVKIKGLGTFKVQRVK 59

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R   N+ T + V I+    V F   + +K+ +
Sbjct: 60 PRESVNVNTGERVLIEGHDKVSFTPDAAMKELV 92


>gi|70731343|ref|YP_261084.1| DNA-binding protein HU subunit beta [Pseudomonas fluorescens
          Pf-5]
 gi|14194650|sp|Q9KHS6|DBHB_PSEF5 RecName: Full=DNA-binding protein HU-beta
 gi|7644386|gb|AAF65565.1|AF250140_2 histone-like protein HU [Pseudomonas fluorescens]
 gi|68345642|gb|AAY93248.1| DNA-binding protein HU, beta subunit [Pseudomonas fluorescens
          Pf-5]
          Length = 90

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    L +  + R +  +   +  +   G+++ +  F TF V  + +R+G
Sbjct: 1  MNKSELIDAIAASADLPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I   +   FKA   LK+ +
Sbjct: 61 RNPQTGKTLEIAAAKKPGFKAGKALKEAV 89


>gi|88801872|ref|ZP_01117400.1| DNA-binding protein HU [Polaribacter irgensii 23-P]
 gi|88782530|gb|EAR13707.1| DNA-binding protein HU [Polaribacter irgensii 23-P]
          Length = 96

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 41/82 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  IS + G+ + D    V     E+  +   G+ + +  F +F +K +  + G
Sbjct: 1  MTKADIVSKISDKSGIEKTDVLATVEAFMTEVKGALENGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  +KI    +  FK +
Sbjct: 61 RNISKNTTIKIPSHNIPAFKPA 82


>gi|59801031|ref|YP_207743.1| IhfB [Neisseria gonorrhoeae FA 1090]
 gi|239999161|ref|ZP_04719085.1| integration host factor subunit beta [Neisseria gonorrhoeae
          35/02]
 gi|240013931|ref|ZP_04720844.1| integration host factor subunit beta [Neisseria gonorrhoeae
          DGI18]
 gi|240016373|ref|ZP_04722913.1| integration host factor subunit beta [Neisseria gonorrhoeae
          FA6140]
 gi|240080492|ref|ZP_04725035.1| integration host factor subunit beta [Neisseria gonorrhoeae FA19]
 gi|240113140|ref|ZP_04727630.1| integration host factor subunit beta [Neisseria gonorrhoeae MS11]
 gi|240118194|ref|ZP_04732256.1| integration host factor subunit beta [Neisseria gonorrhoeae PID1]
 gi|240121500|ref|ZP_04734462.1| integration host factor subunit beta [Neisseria gonorrhoeae
          PID24-1]
 gi|240123742|ref|ZP_04736698.1| integration host factor subunit beta [Neisseria gonorrhoeae
          PID332]
 gi|240125933|ref|ZP_04738819.1| integration host factor subunit beta [Neisseria gonorrhoeae
          SK-92-679]
 gi|254493934|ref|ZP_05107105.1| integration host factor beta-subunit [Neisseria gonorrhoeae 1291]
 gi|268599221|ref|ZP_06133388.1| integration host factor beta-subunit [Neisseria gonorrhoeae MS11]
 gi|297250508|ref|ZP_06864452.2| integration host factor subunit beta [Neisseria polysaccharea
          ATCC 43768]
 gi|59717926|gb|AAW89331.1| integration host factor beta subunit [Neisseria gonorrhoeae FA
          1090]
 gi|226512974|gb|EEH62319.1| integration host factor beta-subunit [Neisseria gonorrhoeae 1291]
 gi|268583352|gb|EEZ48028.1| integration host factor beta-subunit [Neisseria gonorrhoeae MS11]
 gi|296838821|gb|EFH22759.1| integration host factor subunit beta [Neisseria polysaccharea
          ATCC 43768]
 gi|316984100|gb|EFV63078.1| integration host factor subunit beta [Neisseria meningitidis
          H44/76]
 gi|317164448|gb|ADV07989.1| integration host factor subunit beta [Neisseria gonorrhoeae
          TCDC-NG08107]
          Length = 98

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 40/74 (54%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
          L  KD    V  L + +  S  RG+ I+I  F +F +  + +R+GRN +T + V++  + 
Sbjct: 16 LLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNPKTGERVEVPEKH 75

Query: 80 VVVFKASSILKKRI 93
          V  FK    L++R+
Sbjct: 76 VPHFKPGKELRERV 89


>gi|258648340|ref|ZP_05735809.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella
          tannerae ATCC 51259]
 gi|260851505|gb|EEX71374.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella
          tannerae ATCC 51259]
          Length = 90

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%)

Query: 23 KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVV 82
          K++ R  +       +S   G+++ I SF TF VK+K  R+  N    Q + + P+  + 
Sbjct: 19 KETQRLASIFSTVFAESLEEGDSLSIQSFGTFEVKKKLERIVTNPTNKQRMLVPPKLALS 78

Query: 83 FKASSILKKRI 93
          FK S+ILK +I
Sbjct: 79 FKPSNILKDKI 89


>gi|238790629|ref|ZP_04634394.1| DNA-binding protein HU-alpha [Yersinia frederiksenii ATCC 33641]
 gi|238721298|gb|EEQ12973.1| DNA-binding protein HU-alpha [Yersinia frederiksenii ATCC 33641]
          Length = 90

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+ +++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKVQAKAALESTLAAITESLKDGDPVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDSV 89


>gi|158521728|ref|YP_001529598.1| histone family protein DNA-binding protein [Desulfococcus
          oleovorans Hxd3]
 gi|158510554|gb|ABW67521.1| histone family protein DNA-binding protein [Desulfococcus
          oleovorans Hxd3]
          Length = 90

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA-IKISSFATFHVKQKGSRV 63
          +T+S+L+  ++KE G+S+  +   + +  + +  +  + E  + +  F TF   ++ +R 
Sbjct: 1  MTKSELIDKMAKEAGISKVAAGAALNSFMDGVSKALKKKEGKVTLVGFGTFSKVRRKARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QT + +KI    VV FKA   LK  I
Sbjct: 61 GRNPQTGEPIKIKAGNVVKFKAGKKLKDAI 90


>gi|315633974|ref|ZP_07889263.1| integration host factor beta subunit [Aggregatibacter segnis ATCC
          33393]
 gi|315477224|gb|EFU67967.1| integration host factor beta subunit [Aggregatibacter segnis ATCC
          33393]
          Length = 94

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++  + K   +  K     V  +  ++      GE I++  F +F +  +  R+
Sbjct: 1  MTKSELIELLVQKNHNVPVKSVEEAVKAILEQMSYVLESGERIEVRGFGSFSLHCRQPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++VK+D + V  FKA   L++R+
Sbjct: 61 GRNPKTGEQVKLDAKCVPYFKAGKELRERV 90


>gi|159900715|ref|YP_001546962.1| histone family protein DNA-binding protein [Herpetosiphon
          aurantiacus ATCC 23779]
 gi|159893754|gb|ABX06834.1| histone family protein DNA-binding protein [Herpetosiphon
          aurantiacus ATCC 23779]
          Length = 95

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 47/82 (57%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          + +  +++  G+S+K++ R V  + + + +    GE + ++ F TF V+++ +R G N +
Sbjct: 5  EFIAEVAERTGISKKEARRVVDAMLDVVSERLQAGEKVVLTGFGTFEVRERQARQGVNPK 64

Query: 69 TNQEVKIDPRRVVVFKASSILK 90
          T + + I+  +   F AS+ LK
Sbjct: 65 TRERMTIEATKTPGFSASNSLK 86


>gi|325284314|ref|YP_004256854.1| histone family protein DNA-binding protein [Deinococcus
           proteolyticus MRP]
 gi|324316378|gb|ADY27491.1| histone family protein DNA-binding protein [Deinococcus
           proteolyticus MRP]
          Length = 128

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/84 (22%), Positives = 46/84 (54%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
           ++ L+  +S + GL+R+ ++    +L + + ++   G+ + +    TF +K+  +R G  
Sbjct: 42  KTALIAELSSKTGLTRQQASGVTDSLLSTVVEALQAGQTVSLPGLGTFSIKETAARTGVK 101

Query: 67  LQTNQEVKIDPRRVVVFKASSILK 90
             T ++++I   + V FK ++ LK
Sbjct: 102 PGTTEKIQIPAGKKVAFKVATGLK 125


>gi|325278965|ref|YP_004251507.1| histone family protein DNA-binding protein [Odoribacter
          splanchnicus DSM 20712]
 gi|324310774|gb|ADY31327.1| histone family protein DNA-binding protein [Odoribacter
          splanchnicus DSM 20712]
          Length = 95

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 4/95 (4%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  IS+  G+ +      V      I +S V G+ + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEISRTTGIEKVAVQATVEAFMESIKNSVVEGKNVYLRGFGSFVVKKRAEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          RN+  N  +KI    +  FK S    K  ++D++G
Sbjct: 61 RNISKNVTIKIPEHFIPSFKPS----KSFVNDVKG 91


>gi|302381902|ref|YP_003817725.1| integration host factor subunit beta [Brevundimonas subvibrioides
          ATCC 15264]
 gi|302192530|gb|ADL00102.1| integration host factor, beta subunit [Brevundimonas
          subvibrioides ATCC 15264]
          Length = 96

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ ++ E   L+  +  R V  +   + D+   G  +++  F  F V+ + +R 
Sbjct: 1  MIKSELIEKLAAENTHLTHAEVERVVNVVLGRMTDAMASGGRVELRGFGAFSVRSRPARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  + V  FK+   L++R+
Sbjct: 61 GRNPRTGETVDVPAKAVPFFKSGKELRERL 90


>gi|194364617|ref|YP_002027227.1| histone family protein DNA-binding protein [Stenotrophomonas
          maltophilia R551-3]
 gi|254523802|ref|ZP_05135857.1| DNA-binding protein HU [Stenotrophomonas sp. SKA14]
 gi|194347421|gb|ACF50544.1| histone family protein DNA-binding protein [Stenotrophomonas
          maltophilia R551-3]
 gi|219721393|gb|EED39918.1| DNA-binding protein HU [Stenotrophomonas sp. SKA14]
          Length = 90

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   L++ +S+R V  +   +  +   G+A+ +  F TF V+ + +R G
Sbjct: 1  MNKTELIDAVAEAADLTKAESSRAVDAVVAAVTKALKDGDAVTLVGFGTFQVRDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   +KI   +   FKA   LK  +
Sbjct: 61 RNPKTGDTIKIAASKNPSFKAGKALKDAV 89


>gi|114799727|ref|YP_761164.1| DNA-binding protein HU [Hyphomonas neptunium ATCC 15444]
 gi|114739901|gb|ABI78026.1| DNA-binding protein HU [Hyphomonas neptunium ATCC 15444]
          Length = 91

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T   L   +S+   + +K +   V+   + +     +G+ ++I+      V++  +R G
Sbjct: 2  LTLKHLAAELSEAHEMPKKQAEAVVSDFIDRMGGHLKKGKKLRIAGLGILQVRKSPARKG 61

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T +E+KI   + V F+ S  LK+R++
Sbjct: 62 RNPATGEEIKIKASKKVAFRPSKDLKERVL 91


>gi|300023466|ref|YP_003756077.1| histone family protein DNA-binding protein [Hyphomicrobium
          denitrificans ATCC 51888]
 gi|299525287|gb|ADJ23756.1| histone family protein DNA-binding protein [Hyphomicrobium
          denitrificans ATCC 51888]
          Length = 90

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++ DL+ +++++  L+++ ++  V  +   I ++   G  ++I  F TF V  + +R G
Sbjct: 1  MSKKDLIDAVARDCELTKEKASGVVDAVLAHIREAMKEGHEVRIPDFGTFKVAARKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN  T   ++I   RV  F  +  LK
Sbjct: 61 RNPATGMTIQIPASRVPKFTPAKGLK 86


>gi|262341299|ref|YP_003284154.1| DNA-binding protein HU [Blattabacterium sp. (Blattella germanica)
          str. Bge]
 gi|262272636|gb|ACY40544.1| DNA-binding protein HU [Blattabacterium sp. (Blattella germanica)
          str. Bge]
          Length = 94

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 43/82 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D++  I  E G  R D+ + + T   +I  S   GE + +  F +F +K +  ++G
Sbjct: 1  MTKADIITEIISETGSERIDTQKVIETFMKKIKQSLTSGENVYLRGFGSFIIKYRAKKLG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          R++  ++ + I    +  FK +
Sbjct: 61 RHISKDESIVIPAHNIPAFKPA 82


>gi|260592453|ref|ZP_05857911.1| SPBc2 prophage-derived DNA-binding protein HU2 [Prevotella
          veroralis F0319]
 gi|260535499|gb|EEX18116.1| SPBc2 prophage-derived DNA-binding protein HU2 [Prevotella
          veroralis F0319]
          Length = 97

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 47/85 (55%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          + +  ++   G ++ +S + V  + +++  S   G+A+ +S F TF VK++  RV  N  
Sbjct: 5  EFIAELASRTGHTQDESQKMVKAVIDQMAKSFETGDAVPVSGFGTFEVKKRLERVMVNPS 64

Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93
          T   + + P+ V+ FK ++ +K ++
Sbjct: 65 TGLRMLVPPKLVLNFKPAATIKGQV 89


>gi|254502221|ref|ZP_05114372.1| DNA-binding protein HU [Labrenzia alexandrii DFL-11]
 gi|222438292|gb|EEE44971.1| DNA-binding protein HU [Labrenzia alexandrii DFL-11]
          Length = 91

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++ GL++  +   V   F  + ++   G  ++I  F  F V ++ +  G
Sbjct: 1  MNKNDLIAAVAEKTGLTKAQAGEAVDASFEAVTETLKGGGEVRIIGFGNFTVSERAATEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + ++I   +   FKA   LK  +
Sbjct: 61 RNPRTGETIQIPASKTPKFKAGKGLKDAV 89


>gi|189424985|ref|YP_001952162.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
 gi|189421244|gb|ACD95642.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
          Length = 92

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L+ +++++ GL + ++ + V    + +     +G+ + +  F TF   ++ +R G
Sbjct: 1  MTKAELITAVAEKAGLKKVEAEKAVAAFVSAVTGCLKQGDKLSLVGFGTFSTSKRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +N QT +++ I    V  FK    LK+ +
Sbjct: 61 QNPQTGKKITIAAATVPKFKPGKTLKEAV 89


>gi|146329216|ref|YP_001209151.1| DNA-binding protein HU [Dichelobacter nodosus VCS1703A]
 gi|146232686|gb|ABQ13664.1| DNA-binding protein Hu [Dichelobacter nodosus VCS1703A]
          Length = 104

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  I++  G+++  + + +    + + +S V+G+ + +  F TF  +++ +R+G
Sbjct: 1  MNKTELVDVIAEAAGITKAQAGKALDAFTDCVTESLVKGDKVTLIGFGTFETRERSARIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N +T +++ I       FKA   LK
Sbjct: 61 HNPRTREKINIAASTTPAFKAGKKLK 86


>gi|329956611|ref|ZP_08297184.1| DNA-binding protein HU-beta [Bacteroides clarus YIT 12056]
 gi|328523983|gb|EGF51059.1| DNA-binding protein HU-beta [Bacteroides clarus YIT 12056]
          Length = 88

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 39/71 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++ E GLS+ DS R +      +  +   G+ + +  F TF V ++  RVG
Sbjct: 1  MNKSELISAMAAEAGLSKADSKRALDAFIASVTKALKAGDKVALVGFGTFSVMERAGRVG 60

Query: 65 RNLQTNQEVKI 75
           N  T + ++I
Sbjct: 61 INPATKKPIQI 71


>gi|319951158|ref|ZP_08025003.1| histone family protein DNA-binding protein [Dietzia cinnamea P4]
 gi|319435174|gb|EFV90449.1| histone family protein DNA-binding protein [Dietzia cinnamea P4]
          Length = 126

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 40/89 (44%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  ++   G   + +T  +    + I  +   GE+I I  F  F  K + +RV 
Sbjct: 1  MNKADLIAELADRMGGDHQLATEALENTLDIIVRTVASGESITIMGFGIFEKKARAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T + + + P    VF+     K  I
Sbjct: 61 RNPHTGESIPVPPTYSPVFRPGQYFKSVI 89


>gi|282599288|ref|YP_003358600.1| putative DNA-binding protein [Shigella phage phiSboM-AG3]
 gi|226973594|gb|ACO94347.1| putative DNA-binding protein [Shigella phage phiSboM-AG3]
          Length = 92

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R++ V  I+    +++ ++ + V +  + +  +   G ++++  F  F VK + +R G
Sbjct: 1  MNRTEFVAHIASTQNITKGEAEKVVASFIDGVKTAVAAGASVQLVGFGAFEVKHQEAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN    Q ++I+ + VV FK    LK
Sbjct: 61 RNPLNGQTIQIEAKNVVKFKVGEGLK 86


>gi|313185143|gb|ADR50136.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 4   TITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-K 57
           TIT+SD+V  IS         L +K     +   F E+  +      I+  SF TF V K
Sbjct: 8   TITKSDIVDQISLNTKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRK 67

Query: 58  QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           +KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 68  RKGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|323492062|ref|ZP_08097224.1| nucleoid DNA-binding protein [Vibrio brasiliensis LMG 20546]
 gi|323313623|gb|EGA66725.1| nucleoid DNA-binding protein [Vibrio brasiliensis LMG 20546]
          Length = 90

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +      + D+   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLEGVTDALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  E++I    V  F A   LK  +
Sbjct: 61 RNPKTGAEIQIAAANVPAFVAGKALKDSV 89


>gi|332187527|ref|ZP_08389264.1| bacterial DNA-binding family protein [Sphingomonas sp. S17]
 gi|332012456|gb|EGI54524.1| bacterial DNA-binding family protein [Sphingomonas sp. S17]
          Length = 94

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+LV+ I +   GL+ ++    VT  F+EI         +++  F  F  + + +R 
Sbjct: 1  MIRSELVQKIGQHNPGLNPREIELIVTIFFDEITKRLAANGRVELRGFGAFSTRARDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  +RV  FK    ++ R+
Sbjct: 61 GRNPRTGETVDVVAKRVPYFKPGKEMRARL 90


>gi|160934238|ref|ZP_02081625.1| hypothetical protein CLOLEP_03109 [Clostridium leptum DSM 753]
 gi|156866911|gb|EDO60283.1| hypothetical protein CLOLEP_03109 [Clostridium leptum DSM 753]
          Length = 84

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 43/81 (53%)

Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQE 72
          +++++  +S+KD+   V  + + I ++  + E +++  F TF V+ +  R GR+ +TN  
Sbjct: 2  AVAEKANISKKDADTAVNAVIDTIVETLAKDEKVQLVGFGTFEVRSRSERQGRDPRTNSP 61

Query: 73 VKIDPRRVVVFKASSILKKRI 93
          + I   +V  FK     K  I
Sbjct: 62 ITIPASKVPAFKVGKAFKSAI 82


>gi|167042006|gb|ABZ06742.1| putative bacterial DNA-binding protein [uncultured marine
          microorganism HF4000_141F21]
          Length = 91

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 46/87 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  LV  IS    L++ D+ R    +   I +     E +KI+ F T+ V ++ +RVG
Sbjct: 1  MNKKQLVAKISSSMNLNKADAERTFDGITEIILNCLKNDEQVKIAGFGTYKVAKRKARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T ++++I   + V F  +  LK+
Sbjct: 61 RNPRTGEQIQIAASQKVKFLPAKALKE 87


>gi|298530305|ref|ZP_07017707.1| histone family protein DNA-binding protein [Desulfonatronospira
          thiodismutans ASO3-1]
 gi|298509679|gb|EFI33583.1| histone family protein DNA-binding protein [Desulfonatronospira
          thiodismutans ASO3-1]
          Length = 96

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 45/86 (52%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M  T+T+SDLV  + ++    R +    +  L + I  +  +  ++ IS F  F    K 
Sbjct: 1  MVNTLTKSDLVDRVYEQSDRKRAEVKGQIEHLLDIIKQAIKKDHSLLISGFGKFETYDKK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86
           R GRN QT++ + +  R+VVVF+ S
Sbjct: 61 PRKGRNPQTSEAIILPGRKVVVFRLS 86


>gi|10954922|ref|NP_053342.1| hypothetical protein pTi-SAKURA_p104 [Agrobacterium tumefaciens]
 gi|41223342|ref|NP_396642.2| HNS-type DNA binding protein [Agrobacterium tumefaciens str. C58]
 gi|6498275|dbj|BAA87727.1| tiorf102 [Agrobacterium tumefaciens]
 gi|159141770|gb|AAK91083.2| HNS-type DNA binding protein [Agrobacterium tumefaciens str. C58]
          Length = 92

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+ E  L++  +   V ++F +I D+A+ G    I SF  F +K    R GR
Sbjct: 3  TTNEIADKIAAEQSLTKAQAKTIVESVFKQITDAALAGAETSIPSFGKFKLKDTPEREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          N  T   +KI   + + F       K + D + G
Sbjct: 63 NPATGATIKIAASKKLTFTPG----KAVKDALNG 92


>gi|84393074|ref|ZP_00991840.1| Bacterial nucleoid DNA-binding protein [Vibrio splendidus 12B01]
 gi|86147879|ref|ZP_01066184.1| Bacterial nucleoid DNA-binding protein [Vibrio sp. MED222]
 gi|148981204|ref|ZP_01816330.1| bacterial nucleoid DNA-binding protein [Vibrionales bacterium
          SWAT-3]
 gi|84376326|gb|EAP93208.1| Bacterial nucleoid DNA-binding protein [Vibrio splendidus 12B01]
 gi|85834306|gb|EAQ52459.1| Bacterial nucleoid DNA-binding protein [Vibrio sp. MED222]
 gi|145960960|gb|EDK26286.1| bacterial nucleoid DNA-binding protein [Vibrionales bacterium
          SWAT-3]
          Length = 90

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +      + D+   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLGGVTDALKDGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  E++I    V  F A   LK  +
Sbjct: 61 RNPKTGDEIQIAAANVPAFVAGKALKDSV 89


>gi|53717643|ref|YP_106629.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei K96243]
 gi|53723975|ref|YP_104420.1| DNA-binding protein HU, form B [Burkholderia mallei ATCC 23344]
 gi|67643053|ref|ZP_00441802.1| DNA-binding protein HU-beta [Burkholderia mallei GB8 horse 4]
 gi|121599876|ref|YP_994676.1| DNA-binding protein HU, form B [Burkholderia mallei SAVP1]
 gi|124384371|ref|YP_001027609.1| DNA-binding protein HU, form B [Burkholderia mallei NCTC 10229]
 gi|126442121|ref|YP_001057059.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 668]
 gi|126450406|ref|YP_001082492.1| DNA-binding protein HU-alpha [Burkholderia mallei NCTC 10247]
 gi|126453925|ref|YP_001064289.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1106a]
 gi|134281504|ref|ZP_01768212.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 305]
 gi|167001301|ref|ZP_02267100.1| DNA-binding protein HU-alpha [Burkholderia mallei PRL-20]
 gi|167582881|ref|ZP_02375755.1| DNA-binding protein HU-alpha [Burkholderia thailandensis TXDOH]
 gi|167621021|ref|ZP_02389652.1| DNA-binding protein HU-alpha [Burkholderia thailandensis Bt4]
 gi|167717366|ref|ZP_02400602.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei DM98]
 gi|167736410|ref|ZP_02409184.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 14]
 gi|167813485|ref|ZP_02445165.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 91]
 gi|167822026|ref|ZP_02453497.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 9]
 gi|167834839|ref|ZP_02461722.1| DNA-binding protein HU-alpha [Burkholderia thailandensis MSMB43]
 gi|167843639|ref|ZP_02469147.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei B7210]
 gi|167892111|ref|ZP_02479513.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 7894]
 gi|167900623|ref|ZP_02487828.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei NCTC
          13177]
 gi|167908846|ref|ZP_02495937.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 112]
 gi|167921116|ref|ZP_02508207.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei BCC215]
 gi|217424016|ref|ZP_03455516.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 576]
 gi|226193072|ref|ZP_03788682.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei Pakistan
          9]
 gi|237814395|ref|YP_002898846.1| DNA-binding protein HU-beta [Burkholderia pseudomallei MSHR346]
 gi|242314515|ref|ZP_04813531.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1106b]
 gi|254174725|ref|ZP_04881386.1| DNA-binding protein HU-alpha [Burkholderia mallei ATCC 10399]
 gi|254184070|ref|ZP_04890661.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1655]
 gi|254186534|ref|ZP_04893051.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei Pasteur
          52237]
 gi|254194585|ref|ZP_04901016.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei S13]
 gi|254201495|ref|ZP_04907859.1| DNA-binding protein HU-alpha [Burkholderia mallei FMH]
 gi|254206834|ref|ZP_04913185.1| DNA-binding protein HU-alpha [Burkholderia mallei JHU]
 gi|254260815|ref|ZP_04951869.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1710a]
 gi|254298660|ref|ZP_04966111.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 406e]
 gi|254357388|ref|ZP_04973662.1| DNA-binding protein HU-alpha [Burkholderia mallei 2002721280]
 gi|14194657|sp|Q9ZF89|DBHA_BURPS RecName: Full=DNA-binding protein HU-alpha
 gi|4139233|gb|AAD05170.1| DbhB [Burkholderia pseudomallei 1026b]
 gi|52208057|emb|CAH33987.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei K96243]
 gi|52427398|gb|AAU47991.1| DNA-binding protein HU, form B [Burkholderia mallei ATCC 23344]
 gi|121228686|gb|ABM51204.1| DNA-binding protein HU, form B [Burkholderia mallei SAVP1]
 gi|124292391|gb|ABN01660.1| DNA-binding protein HU, form B [Burkholderia mallei NCTC 10229]
 gi|126221614|gb|ABN85120.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 668]
 gi|126227567|gb|ABN91107.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1106a]
 gi|126243276|gb|ABO06369.1| DNA-binding protein HU-alpha [Burkholderia mallei NCTC 10247]
 gi|134247171|gb|EBA47257.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 305]
 gi|147747389|gb|EDK54465.1| DNA-binding protein HU-alpha [Burkholderia mallei FMH]
 gi|147752376|gb|EDK59442.1| DNA-binding protein HU-alpha [Burkholderia mallei JHU]
 gi|148026452|gb|EDK84537.1| DNA-binding protein HU-alpha [Burkholderia mallei 2002721280]
 gi|157808487|gb|EDO85657.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 406e]
 gi|157934219|gb|EDO89889.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei Pasteur
          52237]
 gi|160695770|gb|EDP85740.1| DNA-binding protein HU-alpha [Burkholderia mallei ATCC 10399]
 gi|169651335|gb|EDS84028.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei S13]
 gi|184214602|gb|EDU11645.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1655]
 gi|217393079|gb|EEC33101.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 576]
 gi|225934672|gb|EEH30649.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei Pakistan
          9]
 gi|237505255|gb|ACQ97573.1| DNA-binding protein HU-beta [Burkholderia pseudomallei MSHR346]
 gi|238524297|gb|EEP87730.1| DNA-binding protein HU-beta [Burkholderia mallei GB8 horse 4]
 gi|242137754|gb|EES24156.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1106b]
 gi|243062917|gb|EES45103.1| DNA-binding protein HU-alpha [Burkholderia mallei PRL-20]
 gi|254219504|gb|EET08888.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1710a]
          Length = 92

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++ + G S+  +   + TL   I  +  +G+++++  F +F   ++ +R G
Sbjct: 1  MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDSVQLIGFGSFGSGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + +KI   + V F A    K
Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFK 86


>gi|218710870|ref|YP_002418491.1| DNA-binding protein HU-alpha [Vibrio splendidus LGP32]
 gi|218323889|emb|CAV20250.1| DNA-binding protein HU-alpha [Vibrio splendidus LGP32]
          Length = 110

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 43/86 (50%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ L+  I+++  LS+  +   +      + D+   G+ +++  F TF V  + +R G
Sbjct: 21  MNKTQLIDFIAEKADLSKAQAKAALEATLGGVTDALKDGDQVQLIGFGTFKVNHRAARTG 80

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILK 90
           RN +T  E++I    V  F A   LK
Sbjct: 81  RNPKTGDEIQIAAANVPAFVAGKALK 106


>gi|88860448|ref|ZP_01135086.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas
          tunicata D2]
 gi|88817646|gb|EAR27463.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas
          tunicata D2]
          Length = 90

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R + +  + +  +   G+++ +  F +F V+++ +R G
Sbjct: 1  MNKSQLIDEIAAGADISKAAAGRALDSFIDAVTTALKDGDSVALVGFGSFSVRERAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I    +  FKA   LK  +
Sbjct: 61 RNPQTGATIEIAAANIPSFKAGKALKDAV 89


>gi|313185127|gb|ADR50128.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 4   TITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-K 57
           TIT+SD+V  IS         L +K     +   F E+  +      I+  SF TF V K
Sbjct: 8   TITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRK 67

Query: 58  QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           +KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 68  RKGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|257091775|ref|YP_003165416.1| histone family protein DNA-binding protein [Candidatus
          Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044299|gb|ACV33487.1| histone family protein DNA-binding protein [Candidatus
          Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 94

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    LS+  + + +  +   I DS  +GE + +  F +F    + SR G
Sbjct: 1  MNKSELIDAIAARSELSKAAAAKALDAVIETIVDSVAQGETVTLVGFGSFKASGRASREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +N +T +++ I    V  F A +  K R+
Sbjct: 61 KNPKTGEKIHIPETTVPKFSAGATFKARV 89


>gi|313159618|gb|EFR58978.1| putative DNA-binding protein HU [Alistipes sp. HGB5]
          Length = 92

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+VK +++E G+        V     E+  + +R E + +  F TF +K +  +  
Sbjct: 1  MTKADIVKQLAQETGVEAVTVLAVVEGFMEEVRAAQIRKENVFLRGFGTFLIKHRKEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN+  N  +KI    +  FK S   ++
Sbjct: 61 RNITKNTTIKIPAHDIPAFKPSPAFQR 87


>gi|300725859|ref|ZP_07059323.1| DNA-binding protein, HU family [Prevotella bryantii B14]
 gi|299776847|gb|EFI73393.1| DNA-binding protein, HU family [Prevotella bryantii B14]
          Length = 94

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 48/87 (55%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K + +++L+  I+++ GLS+ DS +   +    I ++    + +++  F TF V  + +R
Sbjct: 2  KIMNKTELIDKIAEKAGLSKADSKKAFESTVAAIKEALAENDKVQLIGFGTFSVTSRPAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSIL 89
           G N  T  +++I  + V+ FKA + L
Sbjct: 62 EGINPSTKAKIQIPAKNVIKFKAGAEL 88


>gi|269977423|ref|ZP_06184395.1| DNA-binding protein HB1 [Mobiluncus mulieris 28-1]
 gi|307700288|ref|ZP_07637328.1| DNA-binding protein HB1 [Mobiluncus mulieris FB024-16]
 gi|269934339|gb|EEZ90901.1| DNA-binding protein HB1 [Mobiluncus mulieris 28-1]
 gi|307614499|gb|EFN93728.1| DNA-binding protein HB1 [Mobiluncus mulieris FB024-16]
          Length = 91

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R++LV  I+K   LS+ ++   ++   + + +S  +GE +K++         + +R G
Sbjct: 1  MNRTELVAEIAKRAALSKTEADAALSAFQDILIESLKKGETVKVTGLMNVERVSRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E+KI     V   A S LKK +
Sbjct: 61 RNPRTGEEIKIPAGFGVKISAGSTLKKAV 89


>gi|325679104|ref|ZP_08158698.1| DNA-binding protein HU-beta [Ruminococcus albus 8]
 gi|324109228|gb|EGC03450.1| DNA-binding protein HU-beta [Ruminococcus albus 8]
          Length = 92

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/86 (22%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+++ G ++K++   +  + + I ++  +G+ + I  F TF V+ + ++  
Sbjct: 1  MKKAELLAAIAEKNGSTKKNAEAALDAVISTITEALEKGDKVAIPGFGTFEVRDRAAKKS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N  T + + +  ++V  FKA+  LK
Sbjct: 61 INPATKEPIDVPAKKVPAFKAAKALK 86


>gi|258647295|ref|ZP_05734764.1| DNA-binding protein HU, beta subunit [Prevotella tannerae ATCC
          51259]
 gi|260852812|gb|EEX72681.1| DNA-binding protein HU, beta subunit [Prevotella tannerae ATCC
          51259]
          Length = 90

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 45/85 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV +I+   GLS+ DS + +      I  +    + + +  F TF V ++ +  G
Sbjct: 1  MNKSELVSAIAASAGLSKVDSKKALDATLEAIAGALKANDKVALLGFGTFAVTERPAHDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N  T +++ I  ++V+ FKA + L
Sbjct: 61 VNPATKEKIHIPAKKVIKFKAGAEL 85


>gi|254420350|ref|ZP_05034074.1| integration host factor, beta subunit [Brevundimonas sp. BAL3]
 gi|196186527|gb|EDX81503.1| integration host factor, beta subunit [Brevundimonas sp. BAL3]
          Length = 117

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+L++ ++ E   L+  +  R V  +  ++  +   G  +++  F  F V+ + +R+
Sbjct: 22  MIKSELIEKLAAENTHLTHAEVERLVNVILGKMTGALSEGGRVELRGFGAFSVRSRPARL 81

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN +T + V++  + V  FK+   L++R+
Sbjct: 82  GRNPRTGETVEVPAKAVPFFKSGKELRERL 111


>gi|305666663|ref|YP_003862950.1| DNA-binding protein HU-beta [Maribacter sp. HTCC2170]
 gi|88707468|gb|EAQ99712.1| DNA-binding protein HU-beta (NS1) (HU-1) [Maribacter sp.
          HTCC2170]
          Length = 90

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/89 (21%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ + G+++  + + + +    +  S  +G+ + +  F ++ V ++ +R G
Sbjct: 1  MNKTELIDAMAADAGITKAAAKKSLESFLGNVEGSLKKGDRVSLVGFGSWSVSRRNAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T + ++I  + VV FKA + L K +
Sbjct: 61 RNPSTGKTIQIAAKNVVKFKAGADLGKAV 89


>gi|121604539|ref|YP_981868.1| histone family protein DNA-binding protein [Polaromonas
          naphthalenivorans CJ2]
 gi|120593508|gb|ABM36947.1| histone family protein DNA-binding protein [Polaromonas
          naphthalenivorans CJ2]
          Length = 90

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I++   +S+  +TR + +  + +  +  +G ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIAQNADISKAAATRALESTISAVKATLKKGGSVSLVGFGTFAVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI   +V  F+    LK
Sbjct: 61 RNPRTGDAIKIKAAKVPKFRPGKALK 86


>gi|332703149|ref|ZP_08423237.1| histone family protein DNA-binding protein [Desulfovibrio
          africanus str. Walvis Bay]
 gi|332553298|gb|EGJ50342.1| histone family protein DNA-binding protein [Desulfovibrio
          africanus str. Walvis Bay]
          Length = 95

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 33 FNEICDSAVRG----EAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88
          F+  C++  +G    E +++ +  +F +  + SR GRN QT QE+ I  ++VV F  S  
Sbjct: 29 FDVFCETLAQGIKSNEGVRLPNVGSFALSARASRTGRNPQTGQEITIPEKKVVKFTTSKT 88

Query: 89 LKKRI 93
          LK+ +
Sbjct: 89 LKEDL 93


>gi|160889559|ref|ZP_02070562.1| hypothetical protein BACUNI_01983 [Bacteroides uniformis ATCC
          8492]
 gi|156861076|gb|EDO54507.1| hypothetical protein BACUNI_01983 [Bacteroides uniformis ATCC
          8492]
          Length = 404

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 46/93 (49%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +   DL+ ++++  G+S+K++  FV   F  I +S  + + +KI    TF +   G
Sbjct: 1  MNEKLNIQDLIDTLAERHGMSKKNADSFVKEFFQLIEESLEKDKYVKIRGLGTFKLIDVG 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T +  +I     V F     LK  I
Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDII 93


>gi|256826372|ref|YP_003150332.1| nucleoid DNA-binding protein [Kytococcus sedentarius DSM 20547]
 gi|256689765|gb|ACV07567.1| bacterial nucleoid DNA-binding protein [Kytococcus sedentarius
          DSM 20547]
          Length = 91

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R++L  +I+++  +S KD+   ++ + + IC++  +GE + +    T    ++ +R G
Sbjct: 1  MNRTELASAIAQQADVSAKDAAAVLSAMGDVICETVGKGEKVSLPGLMTIERVERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + ++I         A S LK
Sbjct: 61 RNPRTGESMEIPASFGAKLSAGSALK 86


>gi|189218096|ref|YP_001938738.1| nucleoid DNA-binding protein [Methylacidiphilum infernorum V4]
 gi|189184954|gb|ACD82139.1| Bacterial nucleoid DNA-binding protein [Methylacidiphilum
          infernorum V4]
          Length = 109

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 9/91 (9%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV----RGEAIKISSFATFHVKQKG 60
          +TR DLV  +S + GL +++    V  +F EI D  +    + E I++ +F  F V  + 
Sbjct: 1  MTRRDLVVKVSTKTGLPQQE----VAKIFEEILDVFMEVFKKKETIELRNFGVFEVTLRK 56

Query: 61 SRVGRNLQTNQ-EVKIDPRRVVVFKASSILK 90
          +R+GRN +  + ++ I PR V+ FK    +K
Sbjct: 57 ARIGRNPRNPEKDILIPPRAVIRFKPGKEVK 87


>gi|74316025|ref|YP_313765.1| histone-like DNA-binding protein [Thiobacillus denitrificans ATCC
          25259]
 gi|74055520|gb|AAZ95960.1| Histone-like DNA-binding protein [Thiobacillus denitrificans ATCC
          25259]
          Length = 98

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 43/83 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+   + E  +S+  + R +  +   +  +  +G+++ +  F TF   ++ +R G
Sbjct: 1  MNKSELIDFAAAEADISKAAAGRALDAILAAVTKAVAKGDSVTLVGFGTFKSSKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASS 87
          RN QT  E+KI    V  F A +
Sbjct: 61 RNPQTGNEIKIAATTVPRFTAGA 83


>gi|281412322|ref|YP_003346401.1| histone family protein DNA-binding protein [Thermotoga
          naphthophila RKU-10]
 gi|281373425|gb|ADA66987.1| histone family protein DNA-binding protein [Thermotoga
          naphthophila RKU-10]
          Length = 90

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query: 31 TLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          T+   I ++  +GE ++I  F +F V++  +R G N QT + + I  R+V  FK    LK
Sbjct: 27 TILETITEALAKGEKVQIVGFGSFEVRKAAARKGVNPQTRKPITIPERKVPKFKPGKALK 86

Query: 91 KRI 93
          +++
Sbjct: 87 EKV 89


>gi|212702269|ref|ZP_03310397.1| hypothetical protein DESPIG_00280 [Desulfovibrio piger ATCC
          29098]
 gi|212674332|gb|EEB34815.1| hypothetical protein DESPIG_00280 [Desulfovibrio piger ATCC
          29098]
          Length = 90

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV+ I+ +  L++  + R +      + +S  + + + ++ F TF V+ +  R G
Sbjct: 1  MTKADLVEKIAAKANLTKAAAERALNAFLASVEESLAKDDRLTLTGFGTFVVETRKERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + + I   ++V F+   +LK
Sbjct: 61 RNPRTGETLTIPACKMVKFRPGKMLK 86


>gi|74316975|ref|YP_314715.1| integration host factor subunit beta [Thiobacillus denitrificans
          ATCC 25259]
 gi|74056470|gb|AAZ96910.1| integration host factor, beta subunit [Thiobacillus denitrificans
          ATCC 25259]
          Length = 94

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  ++ +    S  D    V T+ + +  +  RGE I+I  F +F +  + +R+
Sbjct: 1  MTKSELIAQLAGRHSQFSIADIEMAVKTILDALAKNLSRGERIEIRGFGSFSLSFRPARL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V++  + V  FKA   L+ R+
Sbjct: 61 GRNPKSGERVQVPAKYVPHFKAGKELRDRV 90


>gi|285017391|ref|YP_003375102.1| DNA-binding protein hu (histone-like protein hu) [Xanthomonas
          albilineans GPE PC73]
 gi|283472609|emb|CBA15114.1| probable dna-binding protein hu (histone-like protein hu)
          [Xanthomonas albilineans]
          Length = 90

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 38/73 (52%)

Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80
          S+ ++ R V    +E+  +  +G+++ +  F TF V+ +  R GRN +T   +KI   + 
Sbjct: 17 SKAEAGRAVDAFVSEVTKALKKGDSVTLVGFGTFQVRDRAERTGRNPKTGDSIKIAASKN 76

Query: 81 VVFKASSILKKRI 93
            FKA   LK  +
Sbjct: 77 PTFKAGKALKDAV 89


>gi|54026181|ref|YP_120423.1| putative histone-like DNA-binding protein [Nocardia farcinica IFM
          10152]
 gi|54017689|dbj|BAD59059.1| putative histone-like DNA-binding protein [Nocardia farcinica IFM
          10152]
          Length = 232

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++  RV 
Sbjct: 1  MNKAELIDVLTEKLGTDRRTATAAVEHVVDTIVRAVHKGQSVTITGFGVFEQRKRAPRVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + VK+    V  F+  +  K  I
Sbjct: 61 RNPRTGETVKVKATSVPAFRPGAQFKAVI 89


>gi|330837189|ref|YP_004411830.1| histone family protein DNA-binding protein [Spirochaeta coccoides
          DSM 17374]
 gi|329749092|gb|AEC02448.1| histone family protein DNA-binding protein [Spirochaeta coccoides
          DSM 17374]
          Length = 104

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK-QKGSRV 63
          +T++ +++++ ++  L+R D    +   F EI +     + I++  F TF V+ +KG   
Sbjct: 7  LTKAAIIENLHQKLNLNRSDIHMVLDEFFEEIKNGLQEDKIIELRGFGTFEVRTRKGREK 66

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN +T   V +D   V +F+    LK  + D
Sbjct: 67 ARNPKTGDVVAVDTHGVAIFRPGKELKDYVWD 98


>gi|325663704|ref|ZP_08152108.1| DNA-binding protein HU [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331087225|ref|ZP_08336295.1| DNA-binding protein HU [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325470197|gb|EGC73430.1| DNA-binding protein HU [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330408911|gb|EGG88372.1| DNA-binding protein HU [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 91

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   +S+KDS + +    + + +   +GE +++  F TF V ++ +R G
Sbjct: 1  MNKTELIAAVAEAAEVSKKDSEKVLKAFVDVVTEELKKGEKVQLVGFGTFEVTERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN  T + + I   +   FKA   LK
Sbjct: 61 RNPHTKETMMIAACKAPKFKAGKALK 86


>gi|170745590|ref|YP_001776812.1| histone family protein DNA-binding protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170752147|ref|YP_001783293.1| histone family protein DNA-binding protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659244|gb|ACB28296.1| histone family protein DNA-binding protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659274|gb|ACB28325.1| histone family protein DNA-binding protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 108

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 5/108 (4%)

Query: 5   ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + RS+LV  I+ K   L  +D    V T+   +  + VRG+ I++  F TF V+   +R+
Sbjct: 1   MIRSELVARIAAKNPHLYARDVEAIVATILKTMTTALVRGDRIELREFGTFTVRHHRARI 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111
            RN ++   V +  +  V FK S  ++    + ++ +  + +   +PS
Sbjct: 61  ARNPRSQAVVTVPAKGRVAFKPSKAMR----ELLQAKPLSTEHSPAPS 104


>gi|317480051|ref|ZP_07939163.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36]
 gi|316903793|gb|EFV25635.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36]
          Length = 393

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 46/93 (49%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +   DL+ ++++  G+S+K++  FV   F  I +S  + + +KI    TF +   G
Sbjct: 1  MNEKLNIQDLIDTLAERHGMSKKNADSFVKEFFQLIEESLEKDKYVKIRGLGTFKLIDVG 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T +  +I     V F     LK  I
Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDII 93


>gi|148269794|ref|YP_001244254.1| histone family protein DNA-binding protein [Thermotoga petrophila
          RKU-1]
 gi|147735338|gb|ABQ46678.1| bacterial nucleoid protein Hbs [Thermotoga petrophila RKU-1]
          Length = 90

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  ++K+ G  +KD    + T+   I ++  +GE ++I  F +F V++  +R G
Sbjct: 1  MNKKELIDRVAKKAGAKKKDVRVILDTILETISEALAKGEKVQIVGFGSFEVRKAAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N QT + + I  R+V  FK    LK+++
Sbjct: 61 VNPQTRKPITIPERKVPKFKPGKALKEKV 89


>gi|270296683|ref|ZP_06202882.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270272670|gb|EFA18533.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 393

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 46/93 (49%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +   DL+ ++++  G+S+K++  FV   F  I +S  + + +KI    TF +   G
Sbjct: 1  MNEKLNIQDLIDTLAERHGMSKKNADSFVKEFFQLIEESLEKDKYVKIRGLGTFKLIDVG 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T +  +I     V F     LK  I
Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDII 93


>gi|329120384|ref|ZP_08249051.1| integration host factor beta subunit [Neisseria bacilliformis
          ATCC BAA-1200]
 gi|327462339|gb|EGF08665.1| integration host factor beta subunit [Neisseria bacilliformis
          ATCC BAA-1200]
          Length = 102

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 7/96 (7%)

Query: 5  ITRSDLVKSISKEFG-------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          +T+S+L+  ++  F        L  KD    V  L + +  S  RG+ I+I  F +F + 
Sbjct: 1  MTKSELMARLADVFADKHPLSPLMSKDVEYSVKILVDTMTRSLARGQRIEIRGFGSFDLN 60

Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           + +R GRN +T  +V +  + V  FK    L++R+
Sbjct: 61 HRPARQGRNPKTGDKVDVPEKHVPHFKPGKELRERV 96


>gi|330466240|ref|YP_004403983.1| histone family protein DNA-binding protein [Verrucosispora maris
          AB-18-032]
 gi|328809211|gb|AEB43383.1| histone family protein DNA-binding protein [Verrucosispora maris
          AB-18-032]
          Length = 219

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+++++   G  RK +T  +  +  E+  +  +GE + I+ F  F  + +G+R  
Sbjct: 1  MNKAELIEALAVRLG-DRKTATAALDAVLAEVQAAVTKGEKVAITGFGAFEKRVRGARTA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + VK+    V  F+  +  K+ +
Sbjct: 60 RNPRTGEAVKVKKTSVPTFRPGAGFKEMV 88


>gi|56552697|ref|YP_163536.1| integration host factor subunit beta [Zymomonas mobilis subsp.
          mobilis ZM4]
 gi|241762613|ref|ZP_04760686.1| integration host factor, beta subunit [Zymomonas mobilis subsp.
          mobilis ATCC 10988]
 gi|260753662|ref|YP_003226555.1| integration host factor subunit beta [Zymomonas mobilis subsp.
          mobilis NCIMB 11163]
 gi|56544271|gb|AAV90425.1| integration host factor, beta subunit [Zymomonas mobilis subsp.
          mobilis ZM4]
 gi|241372808|gb|EER62512.1| integration host factor, beta subunit [Zymomonas mobilis subsp.
          mobilis ATCC 10988]
 gi|258553025|gb|ACV75971.1| integration host factor, beta subunit [Zymomonas mobilis subsp.
          mobilis NCIMB 11163]
          Length = 94

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L+++++ +   LS ++    +   F+ I     +G  ++I  F  F  + + +R+
Sbjct: 1  MIRSELIQTLANDNPELSSEEIEHIIDVFFDGITHHLAKGGRVEIRGFGAFSTRFRDARL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++V+++ +RV  FK    +++ +
Sbjct: 61 GRNPRTGEKVEVEAKRVPYFKPGKEIREHL 90


>gi|228469635|ref|ZP_04054615.1| DNA-binding protein HU [Porphyromonas uenonis 60-3]
 gi|228308828|gb|EEK17529.1| DNA-binding protein HU [Porphyromonas uenonis 60-3]
          Length = 90

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 46/82 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++VKSI+   G+ R++  + V    + + ++  +G+ + +  F +F VK++  +  
Sbjct: 1  MTKAEVVKSIADTTGVDRQEVLQVVEAFMDTVKNAMSQGDNVYLRGFGSFVVKERAEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+     + +  R+V  FK S
Sbjct: 61 RNISKQTTIIVPARKVPTFKPS 82


>gi|320088600|emb|CBY98359.1| DNA-binding protein HU-alpha NS2; HU-2 [Salmonella enterica
          subsp. enterica serovar Weltevreden str.
          2007-60-3289-1]
          Length = 74

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 40/74 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPR 78
          RN QT +E+KI  R
Sbjct: 61 RNPQTGKEIKIRRR 74


>gi|303257169|ref|ZP_07343183.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
 gi|331000812|ref|ZP_08324458.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT
          11859]
 gi|302860660|gb|EFL83737.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
 gi|329570340|gb|EGG52073.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT
          11859]
          Length = 105

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 42/86 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++++++++ E GL++ +  + +    + I  +   G    +  F  F+  Q+ +R G
Sbjct: 1  MNKTEMIEAVASETGLAKTEVAKVLNAYTDTIVKTVAEGGEYTVIGFGKFYASQRQARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN  T  E+KI    V  F A    K
Sbjct: 61 RNPSTGVEIKIPAAMVPKFTAGKAFK 86


>gi|254283717|ref|ZP_04958685.1| DNA-binding protein HU [gamma proteobacterium NOR51-B]
 gi|219679920|gb|EED36269.1| DNA-binding protein HU [gamma proteobacterium NOR51-B]
          Length = 90

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+++  LS+  + R +    + + ++  + + + +  F TF VK + +R G
Sbjct: 1  MNKNDLIDAIAEDADLSKASAARALDATLSAVTEALSKQDTVSLVGFGTFSVKHRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN ++ + ++I       FK    LK  +
Sbjct: 61 RNPRSGETIQIKASNNPSFKPGKALKDAV 89


>gi|167042078|gb|ABZ06813.1| putative bacterial DNA-binding protein [uncultured marine
          microorganism HF4000_141I21]
          Length = 91

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 46/87 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  LV  IS    L++ D+ R    +   I +     E +KI+ F T+ V ++ +RVG
Sbjct: 1  MNKKQLVAKISSSMNLNKADAERTFDGITEIILNCLKSDEQVKIAGFGTYKVAKRKARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T ++++I   + V F  +  LK+
Sbjct: 61 RNPRTGEQIQIAASQKVKFLPAKALKE 87


>gi|308808790|ref|XP_003081705.1| unnamed protein product [Ostreococcus tauri]
 gi|116060170|emb|CAL56229.1| unnamed protein product [Ostreococcus tauri]
          Length = 123

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 40/84 (47%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L+ +++ E G ++    R +   F+ I  +   G+ + IS F TF  K + +R GRN  T
Sbjct: 36  LIDAVAAETGETKASVGRVLNACFDVIGATVQSGDKVAISKFGTFARKTRAARDGRNPMT 95

Query: 70  NQEVKIDPRRVVVFKASSILKKRI 93
              +KI       F ASS  K  +
Sbjct: 96  GAPLKIPATDYPSFSASSTWKDAV 119


>gi|300115489|ref|YP_003762064.1| histone family protein DNA-binding protein [Nitrosococcus
          watsonii C-113]
 gi|299541426|gb|ADJ29743.1| histone family protein DNA-binding protein [Nitrosococcus
          watsonii C-113]
          Length = 94

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 48/94 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  +  E  LS+  + R V  LF  I         + ++ F +F V+++ +R G
Sbjct: 1  MNKTELVNFVVLEANLSQAVAQRAVNALFQTITGVLSEKGKVNLAGFGSFSVQKRAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          R+ Q+ + + I  + V  FK S+ LK+ +    R
Sbjct: 61 RHPQSGEVIAIQAKSVPTFKPSNALKEIVQQRKR 94


>gi|95929490|ref|ZP_01312233.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM
          684]
 gi|95134606|gb|EAT16262.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM
          684]
          Length = 94

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S L++ + +    L++K+S   V T+F+ I  + + G+ ++I  F +F ++++ +R 
Sbjct: 1  MTKSQLIERLMESTSDLNKKESELVVNTIFDSIGSALIGGDRVEIRGFGSFSIREREARQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN ++   + I  ++   FK    L++R+
Sbjct: 61 ARNPKSGNLINIPSKKTPFFKTGKELRERV 90


>gi|303237141|ref|ZP_07323711.1| DNA-binding protein HU [Prevotella disiens FB035-09AN]
 gi|302482528|gb|EFL45553.1| DNA-binding protein HU [Prevotella disiens FB035-09AN]
          Length = 92

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          +T++D++  I+   G+S+KD +  V +    I DS ++  E + +  F +F VK +  + 
Sbjct: 1  MTKADIINEIASSTGISKKDVSAVVESFMEAIKDSLLKSKENVYLRGFGSFIVKHRAEKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           RN+  N  + I       FK +    K  ++DM+
Sbjct: 61 ARNISKNTTITIPAHDFPSFKPA----KTFIEDMK 91


>gi|260779568|ref|ZP_05888458.1| DNA-binding protein HU-alpha [Vibrio coralliilyticus ATCC
          BAA-450]
 gi|260604377|gb|EEX30681.1| DNA-binding protein HU-alpha [Vibrio coralliilyticus ATCC
          BAA-450]
          Length = 90

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +    + + D+   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLDGVTDALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  E++I    V  F +   LK  +
Sbjct: 61 RNPKTGDEIQIAAANVPAFVSGKALKDAV 89


>gi|29654755|ref|NP_820447.1| DNA-binding protein HU [Coxiella burnetii RSA 493]
 gi|154705755|ref|YP_001423922.1| DNA-binding protein HU [Coxiella burnetii Dugway 5J108-111]
 gi|161830880|ref|YP_001597305.1| DNA-binding protein HU [Coxiella burnetii RSA 331]
 gi|165919394|ref|ZP_02219460.1| DNA-binding protein HU [Coxiella burnetii RSA 334]
 gi|212212172|ref|YP_002303108.1| DNA-binding protein HU [Coxiella burnetii CbuG_Q212]
 gi|212219188|ref|YP_002305975.1| DNA-binding protein HU [Coxiella burnetii CbuK_Q154]
 gi|29542023|gb|AAO90961.1| DNA-binding protein HU [Coxiella burnetii RSA 493]
 gi|154355041|gb|ABS76503.1| DNA-binding protein HU [Coxiella burnetii Dugway 5J108-111]
 gi|161762747|gb|ABX78389.1| DNA-binding protein HU [Coxiella burnetii RSA 331]
 gi|165916910|gb|EDR35514.1| DNA-binding protein HU [Coxiella burnetii RSA 334]
 gi|212010582|gb|ACJ17963.1| DNA-binding protein HU [Coxiella burnetii CbuG_Q212]
 gi|212013450|gb|ACJ20830.1| DNA-binding protein HU [Coxiella burnetii CbuK_Q154]
          Length = 94

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I++   +S+  + R +    + +  S   GE + +  F +F   Q+ +R G
Sbjct: 1  MNKNELIEVIAQSADISKNAAGRALDAFVDSVTKSLQEGEDVVLVGFGSFTTSQRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I    V  FKA   LK  +
Sbjct: 61 RNPQTGDTMQIPAATVARFKAGKKLKDAV 89


>gi|46201963|ref|ZP_00054041.2| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magnetotacticum MS-1]
          Length = 91

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLV  +++  GLS+  +   +   F  I  +   G+ +++  F +F V Q+ ++ G
Sbjct: 1  MNKQDLVNKVAELSGLSKAAADNVIDATFAAITSALKAGDDVRLVGFGSFSVTQRAAKEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   +KI   +   F A   LK  +
Sbjct: 61 RNPRTGATIKIAASKAPKFTAGKGLKDAV 89


>gi|239616737|ref|YP_002940059.1| histone family protein DNA-binding protein [Kosmotoga olearia TBF
          19.5.1]
 gi|239505568|gb|ACR79055.1| histone family protein DNA-binding protein [Kosmotoga olearia TBF
          19.5.1]
          Length = 90

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV  I+   G+++K +   +      + +   +GE +K+  F TF V  +  R G
Sbjct: 1  MNKKELVAEIAGRTGVTKKRAAEILDCFIEIVGEKLSKGEEVKLVGFGTFEVATRKPRKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T + +KI   +V  F+A   LK+++
Sbjct: 61 VNPRTKKPIKIPGGKVPKFRAGKELKEKV 89


>gi|51244670|ref|YP_064554.1| DNA-binding protein HU-beta [Desulfotalea psychrophila LSv54]
 gi|50875707|emb|CAG35547.1| probable DNA-binding protein HU-beta [Desulfotalea psychrophila
           LSv54]
          Length = 121

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 63/99 (63%), Gaps = 2/99 (2%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           + + +S+L++++S++  +  +++     T+ + + ++  +G++I+I  F +F VKQ  S 
Sbjct: 25  ENMNKSELIEALSQDVNIPHREAAAITNTVIDTMTEALAKGDSIEIRGFGSFVVKQYESY 84

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
            GRN +T +++K+ P+++  FK    L++++  D++ +K
Sbjct: 85  EGRNPKTGKKIKVKPKKLPFFKVGKDLREQV--DLKRKK 121


>gi|261749189|ref|YP_003256874.1| DNA-binding protein HU [Blattabacterium sp. (Periplaneta
          americana) str. BPLAN]
 gi|261497281|gb|ACX83731.1| DNA-binding protein HU [Blattabacterium sp. (Periplaneta
          americana) str. BPLAN]
          Length = 97

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 42/82 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D++  I  E G  R D+ + + T   +I  S   GE + +  F +F +K +  ++G
Sbjct: 1  MTKADIITEIISETGSERIDTQKVIETFMKKIKQSLTSGENVYLRGFGSFIIKYRAKKLG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          R++  +  + I    +  FK +
Sbjct: 61 RHISKDMSIVIPAHNIPAFKPA 82


>gi|195940565|ref|ZP_03085947.1| transcriptional regulator HU subunit beta [Escherichia coli
          O157:H7 str. EC4024]
          Length = 74

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 39/71 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + +S   G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKI 75
          RN QT +E+ I
Sbjct: 61 RNPQTGKEITI 71


>gi|21672575|ref|NP_660642.1| integration host factor beta subunit [Buchnera aphidicola str. Sg
          (Schizaphis graminum)]
 gi|2495248|sp|Q44654|IHFB_BUCAP RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|1448955|gb|AAC05430.1| integration host factor beta subunit [Buchnera aphidicola]
 gi|21623203|gb|AAM67853.1| integration host factor beta subunit [Buchnera aphidicola str. Sg
          (Schizaphis graminum)]
          Length = 93

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L + I+ ++  +S K     V  +   I  S  +G+ I+I  F TF +  + SR+
Sbjct: 1  MTKSELFERIAERKAHISNKIIECAVKEMLEYISISLSKGKRIEIRGFGTFSLHYRSSRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T +++K++ R +  FK    L+ R
Sbjct: 61 GRNPKTGKKIKLNERYIPYFKPGKQLRDR 89


>gi|254788366|ref|YP_003075795.1| DNA-binding protein HU [Teredinibacter turnerae T7901]
 gi|237686942|gb|ACR14206.1| DNA-binding protein HU [Teredinibacter turnerae T7901]
          Length = 93

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 44/84 (52%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          ++DLVK +     L+R  +   V  +  ++ ++  RGE +++    +F V+ + +  G N
Sbjct: 3  KTDLVKQLCTLGELNRVQADDVVEAIVEQVTNALARGERVQLPGLGSFSVRHRNAHTGIN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT + ++I  +  + FKA   L+
Sbjct: 63 PQTGEALRIAAKNQIFFKAGKRLR 86


>gi|255690691|ref|ZP_05414366.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565]
 gi|260623721|gb|EEX46592.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565]
          Length = 93

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 42/82 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  ++++ G+ +  +   V      + DS + G  + +  F +F VKQ+  +V 
Sbjct: 1  MTKADIVARVAQQTGVEKAVAMTVVEAFMETVKDSMIAGNDVFLRGFGSFVVKQRAEKVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTIVIPAHSIPAFKPA 82


>gi|224373120|ref|YP_002607492.1| non-specific DNA-binding protein [Nautilia profundicola AmH]
 gi|223589367|gb|ACM93103.1| non-specific DNA-binding protein [Nautilia profundicola AmH]
          Length = 91

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++++ GLS+KD    +      + ++   G+ +    F +F V  +  RV 
Sbjct: 1  MKKSELIAAVAEKSGLSKKDVNAVIDATIEAMEEALKAGKKVSFIGFGSFEVVTRAPRVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R   TN+EVKI   + V FK    LK+ +
Sbjct: 61 RVPGTNKEVKIPETKSVKFKVGKKLKELL 89


>gi|94502166|ref|ZP_01308664.1| DNA-binding protein HU [Oceanobacter sp. RED65]
 gi|94425691|gb|EAT10701.1| DNA-binding protein HU [Oceanobacter sp. RED65]
          Length = 76

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 38/74 (51%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
          + +  + R +    + I ++   G+ + +  F TF VK++ +R GRN QT Q ++I   +
Sbjct: 2  IPKAAAGRALDATVDAITNALKEGDQVVLVGFGTFAVKERAARTGRNPQTGQPIEIAAAK 61

Query: 80 VVVFKASSILKKRI 93
          V  FK    LK  +
Sbjct: 62 VPGFKPGKALKDAV 75


>gi|60681456|ref|YP_211600.1| putative histone-like DNA-binding protein [Bacteroides fragilis
          NCTC 9343]
 gi|60492890|emb|CAH07665.1| putative histone-like DNA-binding protein [Bacteroides fragilis
          NCTC 9343]
          Length = 91

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 44/79 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+K ++    L+ K+++  V  + N + ++ +R E++ +  F TF +K + +R  
Sbjct: 1  MNKHDLIKKVALRGNLNAKEASAIVEVVMNAMVEAILREESVTLVGFGTFSIKMRKARNV 60

Query: 65 RNLQTNQEVKIDPRRVVVF 83
           N  T + + I  R+VV F
Sbjct: 61 LNPSTGENMVIPARKVVKF 79


>gi|124290|sp|P23303|IHFB_SERMA RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|152829|gb|AAA26557.1| integration host factor beta-subunit [Serratia marcescens]
          Length = 94

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +   GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLAGQQSHIPAKAVEDAVKEMLEHMAATLAEGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V++D + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDR 89


>gi|240128445|ref|ZP_04741106.1| integration host factor subunit beta [Neisseria gonorrhoeae
          SK-93-1035]
          Length = 98

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 40/74 (54%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
          L  KD    V  L + +  S  RG+ I+I  F +F +  + +R+GRN +T + V++  + 
Sbjct: 16 LLAKDVEYSVKFLVDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNPKTGERVEVPEKH 75

Query: 80 VVVFKASSILKKRI 93
          V  FK    L++R+
Sbjct: 76 VPHFKPGKELRERV 89


>gi|332283861|ref|YP_004415772.1| DNA-binding protein Hu-beta [Pusillimonas sp. T7-7]
 gi|330427814|gb|AEC19148.1| DNA-binding protein Hu-beta [Pusillimonas sp. T7-7]
          Length = 90

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ IS +  LS+ D+ R +      +  +  +   + +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHISTKADLSKADAGRALEAFIGAVKTTLKKKGTVTLVGFGTFAVSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + +KI   +V  F+    LK
Sbjct: 61 RNPRTGEAIKIKKAKVPKFRPGKALK 86


>gi|313184943|gb|ADR50036.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184945|gb|ADR50037.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 4   TITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-K 57
           T+T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V K
Sbjct: 8   TVTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRK 67

Query: 58  QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           +KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 68  RKGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|196228197|ref|ZP_03127064.1| histone family protein DNA-binding protein [Chthoniobacter flavus
          Ellin428]
 gi|196227600|gb|EDY22103.1| histone family protein DNA-binding protein [Chthoniobacter flavus
          Ellin428]
          Length = 92

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 5  ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + +++LV+++ K  G  +S+  + R V  +   I     +G+ +++  F TF V  + +R
Sbjct: 1  MNKAELVEAVQKSLGKDVSKAQAERSVEAVIEGIKSGLKKGKPVQLVGFGTFKVTNRKAR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +G N +T +++KI   + V F A   LK ++
Sbjct: 61 MGINPKTGEKIKIKASKSVKFAAGKDLKSKL 91


>gi|260910484|ref|ZP_05917153.1| DNA-binding protein HU [Prevotella sp. oral taxon 472 str. F0295]
 gi|260635430|gb|EEX53451.1| DNA-binding protein HU [Prevotella sp. oral taxon 472 str. F0295]
          Length = 90

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 40/71 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  I+   GLS+ DS + +      I  + V+G+ +++  F TF V ++ + VG
Sbjct: 1  MNKTDLIDKIAAGSGLSKADSKKALDATVAAIKGALVKGDKVQLVGFGTFSVNERPAHVG 60

Query: 65 RNLQTNQEVKI 75
           N  T Q++ I
Sbjct: 61 VNPATKQKITI 71


>gi|84498303|ref|ZP_00997100.1| Histone-like bacterial DNA-binding protein [Janibacter sp.
          HTCC2649]
 gi|84381803|gb|EAP97686.1| Histone-like bacterial DNA-binding protein [Janibacter sp.
          HTCC2649]
          Length = 235

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV+ + K  G SRK +T  +  + + I     +G  + I+ F TF   ++ +R G
Sbjct: 1  MNKGELVRELEKRLG-SRKAATEALDAVLDTIVREVTKGGKVGITGFGTFDRVERAARTG 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN  +   V+I   +   F+A +  K
Sbjct: 60 RNPHSGASVRIPKSKAPRFRAGAAFK 85


>gi|292897978|ref|YP_003537347.1| histone like DNA-binding protein HU-alpha [Erwinia amylovora ATCC
          49946]
 gi|291197826|emb|CBJ44921.1| histone like DNA-binding protein HU-alpha [Erwinia amylovora ATCC
          49946]
          Length = 90

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R  
Sbjct: 1  MNKTQLIDVIADKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+KI    V  F +   LK  +
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89


>gi|152979211|ref|YP_001344840.1| integration host factor, beta subunit [Actinobacillus
          succinogenes 130Z]
 gi|171704341|sp|A6VPK8|IHFB_ACTSZ RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|150840934|gb|ABR74905.1| integration host factor, beta subunit [Actinobacillus
          succinogenes 130Z]
          Length = 94

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++K+   +S K     V  +  ++  S    + I+I  F +F +  +  R+
Sbjct: 1  MTKSELIELLAKKNPSISTKIVENSVKEILEQMSGSLENSDRIEIRGFGSFSLHYRQPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + VK+D + V  FKA   LK+R+
Sbjct: 61 GRNPKTGESVKLDAKCVPHFKAGKELKERV 90


>gi|83719600|ref|YP_440564.1| DNA-binding protein HU-alpha [Burkholderia thailandensis E264]
 gi|83653425|gb|ABC37488.1| DNA-binding protein HU-alpha [Burkholderia thailandensis E264]
          Length = 126

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 46/86 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + + +L+ +++ + G S+  +   + TL   I  +  +G+++++  F +F   ++ +R G
Sbjct: 35  MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDSVQLIGFGSFGSGKRAARTG 94

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILK 90
           RN +T + +KI   + V F A    K
Sbjct: 95  RNPKTGETIKIPAAKTVKFTAGKAFK 120


>gi|329889861|ref|ZP_08268204.1| DNA-binding protein HU 1 [Brevundimonas diminuta ATCC 11568]
 gi|328845162|gb|EGF94726.1| DNA-binding protein HU 1 [Brevundimonas diminuta ATCC 11568]
          Length = 91

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  SDL   I+ E G S+ D+ + V  +F  I D+A  G  I ++ F  F VK   +R G
Sbjct: 1  MNNSDLADKIAAEHGTSKADARKIVDAVFAAIADAAAGGSEIALNGFGKFKVKDSPAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T + +KI   + + F  +  +K ++
Sbjct: 61 RNPATGETIKIAASKKLTFSPAKAVKDKL 89


>gi|83311280|ref|YP_421544.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1]
 gi|82946121|dbj|BAE50985.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magneticum AMB-1]
          Length = 92

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++    +++ D+   +  +F  I  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKSELIAAVADGANMTKADAASAIDAVFAAITAAMKSGDDVRLVGFGTFSVSARPARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I   +   F A   LK  I
Sbjct: 61 RNPQTGKTLTIAASKSAKFTAGKSLKDTI 89


>gi|282601029|ref|ZP_05980488.2| integration host factor, beta subunit [Subdoligranulum variabile
          DSM 15176]
 gi|282570392|gb|EFB75927.1| integration host factor, beta subunit [Subdoligranulum variabile
          DSM 15176]
          Length = 91

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +TRS L+  ++ + G++  +  + +  +F  I D    G+ + I+ F  F ++++ ++  
Sbjct: 1  MTRSQLITKVANDTGMTSGEVEKVMDCIFGTIGDVLKGGDKVTIAGFGRFEMRERQTKNF 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T    K++P  +  FKAS  LK+++
Sbjct: 61 TNPKTKVTSKLEPTAIPGFKASGRLKEKV 89


>gi|148555235|ref|YP_001262817.1| histone family protein DNA-binding protein [Sphingomonas
          wittichii RW1]
 gi|148500425|gb|ABQ68679.1| histone family protein DNA-binding protein [Sphingomonas
          wittichii RW1]
          Length = 91

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 40/83 (48%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          +D+   ++ E G+ +  + R +      I D+A +G+ + +  F  F V  + +R GRN 
Sbjct: 4  ADIAGVVAAEQGIDKAAAKRVIDAALKAITDAAKKGDEVSLPGFGKFKVTDRPAREGRNP 63

Query: 68 QTNQEVKIDPRRVVVFKASSILK 90
           T   + I   + V F A+  LK
Sbjct: 64 ATGATLTIAASKKVSFTAAKALK 86


>gi|323136622|ref|ZP_08071703.1| histone family protein DNA-binding protein [Methylocystis sp.
          ATCC 49242]
 gi|322397939|gb|EFY00460.1| histone family protein DNA-binding protein [Methylocystis sp.
          ATCC 49242]
          Length = 93

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV+ ++ E   S+  +   +  + + I  +  +G+ +++  F TF VK++ +  G
Sbjct: 1  MNKLELVEHVANETETSKAAAAAAIDAVIDGITKALKKGDEVRLVGFGTFSVKKRAAGKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN  T +E+KI   +   FK  + LK
Sbjct: 61 RNPATGEEIKIPASKSARFKPGATLK 86


>gi|296282081|ref|ZP_06860079.1| integration host factor beta-subunit [Citromicrobium
          bathyomarinum JL354]
          Length = 93

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ ++++   L  ++  + V   F EI      G  I++  F  F  +++ +R 
Sbjct: 1  MIRSELLQKLAQDNPELRAQEVEQVVDIFFEEIAQRLAEGGRIELRGFGAFSTREREART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V +  +RV  FK    ++  +  D
Sbjct: 61 GRNPRTGEAVDVPAKRVPYFKPGKEMRNALNPD 93


>gi|215778416|ref|YP_002261556.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238]
 gi|208011461|emb|CAQ81925.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238]
          Length = 91

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV  I++   LS++ +T  +    + I  +   G+ + +  F TF V  + +R G
Sbjct: 1  MNKKELVWHIAESADLSQQRATATLNATVDIITTALKEGDDVALVGFGTFKVNPRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   ++I     +VFKA   LK+ +
Sbjct: 61 RNPKTGDMIQIAASNALVFKAGKALKETL 89


>gi|261415246|ref|YP_003248929.1| histone family protein DNA-binding protein [Fibrobacter
          succinogenes subsp. succinogenes S85]
 gi|261371702|gb|ACX74447.1| histone family protein DNA-binding protein [Fibrobacter
          succinogenes subsp. succinogenes S85]
 gi|302327669|gb|ADL26870.1| DNA-binding protein HU [Fibrobacter succinogenes subsp.
          succinogenes S85]
          Length = 100

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 5  ITRSDLVKSI--SKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + + DL++++  +KE G+ S+  + R +  + + I     +   +++  F TF VK + +
Sbjct: 1  MNKQDLIEAVLANKEAGIESKAAAARAIDAVLDGIAAGIKKDGNVQLIGFGTFTVKSRAA 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          R GRN QT   +KI   + V FKA + LK+
Sbjct: 61 RTGRNPQTGATIKIKASKTVGFKAGAALKE 90


>gi|110004904|emb|CAK99236.1| probable dna-binding protein hu2 [Spiroplasma citri]
          Length = 94

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 5  ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +++ +L   I+++F   LS+  +      +F+ I  + V G+ + I+ F  F V ++ +R
Sbjct: 1  MSKKELAAQIAEKFTDVLSKTHAEEITNFVFDHIKKALVAGKEVSIAGFGKFAVTERAAR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN  T + +KI   +   FKA   LK
Sbjct: 61 DGRNPSTGETIKIPASKSAKFKAGKQLK 88


>gi|51473887|ref|YP_067644.1| integration host factor alpha subunit [Rickettsia typhi str.
          Wilmington]
 gi|81636348|sp|Q9AKA7|HLP_RICTY RecName: Full=Histone-like DNA-binding protein
 gi|13235499|emb|CAC33761.1| Integration host factor alpha-subunit [Rickettsia typhi]
 gi|51460199|gb|AAU04162.1| integration host factor alpha subunit [Rickettsia typhi str.
          Wilmington]
          Length = 95

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 1/95 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT++ +   ++ + G S       V T+F+ I + A + + + + +F +F VKQK  R 
Sbjct: 2  TITKNKISLMLNSKLGFSNNLCEEIVNTVFSNILEIA-KVQKLTLKNFGSFEVKQKKQRP 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          G N  T   V I  ++ + F  S  LK  I   MR
Sbjct: 61 GINFHTKSPVMIASKKNLRFSPSEKLKALINKSMR 95


>gi|325983776|ref|YP_004296177.1| histone family protein DNA-binding protein [Nitrosomonas sp.
          AL212]
 gi|325533295|gb|ADZ28015.1| histone family protein DNA-binding protein [Nitrosomonas sp.
          AL212]
          Length = 93

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 45/85 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+++++     ++  +T  +  L   I ++   G  +++  F TF V ++ SR G
Sbjct: 1  MNKTELIEAVATRSQTTKTQTTALLNGLLEVIQETIASGNDVQLVGFGTFSVTERTSREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN  T + + I  ++VV FK    L
Sbjct: 61 RNPATGETITIPAKKVVKFKPGKAL 85


>gi|222108996|ref|YP_002551262.1| HNS-type DNA binding protein [Agrobacterium radiobacter K84]
 gi|221727918|gb|ACM30968.1| HNS-type DNA binding protein [Agrobacterium radiobacter K84]
          Length = 92

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+ +  L++  +   V ++F +I D+A+ G    I SF  F +K   +R GR
Sbjct: 3  TTNEIADKIAADQNLTKAQAKTIVESVFKQITDAALAGAETSIPSFGKFKLKDTPAREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          N  T   +KI   + + F       K + D + G
Sbjct: 63 NPATGATIKIAASKKLTFAPG----KAVKDALNG 92


>gi|15828558|ref|NP_325918.1| DNA-binding protein HU [Mycoplasma pulmonis UAB CTIP]
 gi|14089500|emb|CAC13260.1| DNA-BINDING PROTEIN HU [Mycoplasma pulmonis]
          Length = 126

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+T+ + ++ IS+   +S++D    + ++   I +S +  E + I    TF  K K +R
Sbjct: 34  KTMTKKEFMQKISEHSFISQRDVEAIINSMVFVIKESLISEEKVTIPMLGTFETKIKAAR 93

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKK 91
            G    T +++ I  +RVV FK +  +K+
Sbjct: 94  EGIKFTTGEKILIPEKRVVKFKPTKYIKE 122


>gi|237738391|ref|ZP_04568872.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817]
 gi|229420271|gb|EEO35318.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817]
          Length = 91

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 37/69 (53%)

Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80
          S+ ++ R    + N I ++   G+ + I  +  F V +K  RVGRN +T +E+ I  ++ 
Sbjct: 18 SKAEAERKFEVILNTIEETLKAGDELNIIGWGKFEVVEKAERVGRNPKTGEEIVIPAKKT 77

Query: 81 VVFKASSIL 89
          V FKA   L
Sbjct: 78 VKFKAGKTL 86


>gi|255015828|ref|ZP_05287954.1| putative histone-like protein [Bacteroides sp. 2_1_7]
 gi|256841777|ref|ZP_05547283.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
 gi|298376992|ref|ZP_06986946.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
 gi|256736671|gb|EEU49999.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
 gi|298265976|gb|EFI07635.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
          Length = 91

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSRV 63
          + +S L++ +SK  G + K+  R++    N I     R GE + I  F  +  + + SR+
Sbjct: 1  MNKSQLIEELSKRVG-NDKEEIRYILEELNNIILEKTRAGEKVCIQGFGVYTPRLQTSRL 59

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN ++ + + + PR +V FK +  L K I
Sbjct: 60 ARNPKSGETLMLIPRTIVHFKCAPNLLKEI 89


>gi|288799936|ref|ZP_06405395.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333184|gb|EFC71663.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039]
          Length = 93

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63
          +T++D++  I+   GL +KD +  V +L   I DS + + E + +  F +F +K + ++ 
Sbjct: 1  MTKADIINEIALSTGLQKKDVSVVVESLMGTIKDSLLNKKENVYLRGFGSFTIKHRAAKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKAS 86
           RN+  N  + ID      FK +
Sbjct: 61 ARNILKNTTMTIDAHDFPSFKPA 83


>gi|171915587|ref|ZP_02931057.1| histone family protein DNA-binding protein [Verrucomicrobium
          spinosum DSM 4136]
          Length = 91

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 2/88 (2%)

Query: 5  ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + +++L++++ K  G   S++ ++  V  +   I     +   +++  F TF V ++ +R
Sbjct: 1  MNKAELIEAVQKNLGGDTSKRAASDAVEAVLASISKGVAKTGTVQLIGFGTFKVAKRAAR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN +T + +KI   + V F  SS LK
Sbjct: 61 TGRNPKTGEAMKIKASKTVRFVPSSALK 88


>gi|153805807|ref|ZP_01958475.1| hypothetical protein BACCAC_00044 [Bacteroides caccae ATCC 43185]
 gi|149130484|gb|EDM21690.1| hypothetical protein BACCAC_00044 [Bacteroides caccae ATCC 43185]
          Length = 90

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++ E  +S+ D+ + +      + ++   G+ + +  F TF V ++  R G
Sbjct: 1  MNKSELISAMAAESQMSKADAKKALDAFITSVTNAMKAGDKVSLVGFGTFSVSERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T   + I  ++V  FKA + L   +
Sbjct: 61 INPSTKATITIPAKKVAKFKAGAELSAAV 89


>gi|58979473|gb|AAW83401.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979475|gb|AAW83402.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979477|gb|AAW83403.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979479|gb|AAW83404.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979481|gb|AAW83405.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979483|gb|AAW83406.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979487|gb|AAW83408.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979489|gb|AAW83409.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979491|gb|AAW83410.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979493|gb|AAW83411.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979531|gb|AAW83430.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979533|gb|AAW83431.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979535|gb|AAW83432.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979537|gb|AAW83433.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979539|gb|AAW83434.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979541|gb|AAW83435.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979543|gb|AAW83436.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979545|gb|AAW83437.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979547|gb|AAW83438.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979549|gb|AAW83439.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979551|gb|AAW83440.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979555|gb|AAW83442.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979557|gb|AAW83443.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979559|gb|AAW83444.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979561|gb|AAW83445.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979563|gb|AAW83446.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979565|gb|AAW83447.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979567|gb|AAW83448.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979569|gb|AAW83449.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979575|gb|AAW83452.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979581|gb|AAW83455.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979589|gb|AAW83459.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979593|gb|AAW83461.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979601|gb|AAW83465.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979607|gb|AAW83468.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979609|gb|AAW83469.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979611|gb|AAW83470.1| DNA-binding protein HU [Campylobacter upsaliensis]
          Length = 98

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 42/80 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+      + + I +   +G++I    F TF   ++ +R  
Sbjct: 1  MTKADFISQVAQNAGLTKKDAGAATDAVISTITEVLAKGDSISFIGFGTFSTTERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFK 84
          R   T + +K+   RV  FK
Sbjct: 61 RVPSTGKTIKVPATRVAKFK 80


>gi|253996687|ref|YP_003048751.1| histone family protein DNA-binding protein [Methylotenera mobilis
          JLW8]
 gi|253983366|gb|ACT48224.1| histone family protein DNA-binding protein [Methylotenera mobilis
          JLW8]
          Length = 90

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  I+   G+S+  + R +      I  +  +G+ + +  F TF+V ++ +R G
Sbjct: 1  MNKSELIDEIASAAGISKAAAGRALDATTAAITKAIKKGDLVTLIGFGTFYVGKREARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + +KI       F+A   LK
Sbjct: 61 RNPRTGETIKIQAANSPKFRAGKALK 86


>gi|120610349|ref|YP_970027.1| histone family protein DNA-binding protein [Acidovorax citrulli
          AAC00-1]
 gi|326316509|ref|YP_004234181.1| histone family protein DNA-binding protein [Acidovorax avenae
          subsp. avenae ATCC 19860]
 gi|120588813|gb|ABM32253.1| histone family protein DNA-binding protein [Acidovorax citrulli
          AAC00-1]
 gi|323373345|gb|ADX45614.1| histone family protein DNA-binding protein [Acidovorax avenae
          subsp. avenae ATCC 19860]
          Length = 90

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + ++   +  +  +G  + +  F TF V ++ +R G
Sbjct: 1  MNKSELIEQIATNADISKAAAARALESMIESVKKTLKKGGTVSLVGFGTFAVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI   +V  F+    LK
Sbjct: 61 RNPRTGDTIKIKAAKVPKFRPGKALK 86


>gi|71083197|ref|YP_265916.1| integration host factor beta-subunit (IHF-beta) [Candidatus
          Pelagibacter ubique HTCC1062]
 gi|91762373|ref|ZP_01264338.1| Integration host factor beta-subunit (IHF-beta) [Candidatus
          Pelagibacter ubique HTCC1002]
 gi|71062310|gb|AAZ21313.1| Integration host factor beta-subunit (IHF-beta) [Candidatus
          Pelagibacter ubique HTCC1062]
 gi|91718175|gb|EAS84825.1| Integration host factor beta-subunit (IHF-beta) [Candidatus
          Pelagibacter ubique HTCC1002]
          Length = 96

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          I +S L+K ++  +    +KD  +F   +  EI  +  RG+ +++  F  F    + +R+
Sbjct: 3  IVKSKLLKQLANNYPNFLKKDLEKFTDIILTEIKQALKRGDRVELRGFGMFSTNIQKARI 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           RN +T ++V    ++ + FK S  + K++ +D
Sbjct: 63 SRNPKTGEKVNTPEKKTIHFKMSKEMFKKLNND 95


>gi|311280174|ref|YP_003942405.1| integration host factor, beta subunit [Enterobacter cloacae SCF1]
 gi|308749369|gb|ADO49121.1| integration host factor, beta subunit [Enterobacter cloacae SCF1]
          Length = 94

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + S++  +  K     V  +   +  +  +GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V+++ + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89


>gi|302339671|ref|YP_003804877.1| histone family protein DNA-binding protein [Spirochaeta smaragdinae
           DSM 11293]
 gi|301636856|gb|ADK82283.1| histone family protein DNA-binding protein [Spirochaeta smaragdinae
           DSM 11293]
          Length = 117

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 2/103 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK-QKGSRV 63
           +T++++++ I ++  ++R D    +  LF E+ D+  +   +++  F TF ++ +KG   
Sbjct: 15  LTKAEIIERIYEKHEVNRSDIHDVIDALFEELKDALQQDRVVELRGFGTFEIRTRKGRDR 74

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
            RN +T + V ++   V VF+    LK+ I   +RG      D
Sbjct: 75  ARNPKTGEIVPVNTHGVAVFRPGKELKQ-IAWPLRGENGGSGD 116


>gi|329890646|ref|ZP_08268989.1| integration host factor, beta subunit [Brevundimonas diminuta
          ATCC 11568]
 gi|328845947|gb|EGF95511.1| integration host factor, beta subunit [Brevundimonas diminuta
          ATCC 11568]
          Length = 96

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ ++ E   L+  +  R V  +   + ++   G  +++  F  F V+ + +R 
Sbjct: 1  MIKSELIEKLAAENLHLTHAEVERVVNVILGRMTETLSDGGRVELRGFGAFSVRSRPART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V++  + V  FK+   L++R+
Sbjct: 61 GRNPRTGETVEVPAKAVPFFKSGKELRERL 90


>gi|229821233|ref|YP_002882759.1| histone family protein DNA-binding protein [Beutenbergia cavernae
          DSM 12333]
 gi|229567146|gb|ACQ80997.1| histone family protein DNA-binding protein [Beutenbergia cavernae
          DSM 12333]
          Length = 93

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 50/90 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R++LV +I+ +  L++  +   ++ L + +  S  +GE +K++   +    ++ +R 
Sbjct: 2  SVNRTELVAAIADKASLTKVQADAALSALQDVLVTSLSKGETVKVTGLLSVERVERAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E++I     V   A S+LK  +
Sbjct: 62 GRNPRTGEEIQIPAGYGVKISAGSVLKSAV 91


>gi|315638696|ref|ZP_07893870.1| DNA-binding protein HU [Campylobacter upsaliensis JV21]
 gi|58979347|gb|AAW83338.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979399|gb|AAW83364.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979401|gb|AAW83365.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979403|gb|AAW83366.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979495|gb|AAW83412.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979497|gb|AAW83413.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979499|gb|AAW83414.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979501|gb|AAW83415.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979503|gb|AAW83416.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979505|gb|AAW83417.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979507|gb|AAW83418.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979509|gb|AAW83419.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979511|gb|AAW83420.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979513|gb|AAW83421.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979515|gb|AAW83422.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979517|gb|AAW83423.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979519|gb|AAW83424.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979521|gb|AAW83425.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979523|gb|AAW83426.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979525|gb|AAW83427.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979527|gb|AAW83428.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979529|gb|AAW83429.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979553|gb|AAW83441.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979577|gb|AAW83453.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979579|gb|AAW83454.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979583|gb|AAW83456.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979585|gb|AAW83457.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979587|gb|AAW83458.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979597|gb|AAW83463.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979603|gb|AAW83466.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979605|gb|AAW83467.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|315481320|gb|EFU71950.1| DNA-binding protein HU [Campylobacter upsaliensis JV21]
          Length = 98

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 42/80 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+      + + I +   +G++I    F TF   ++ +R  
Sbjct: 1  MTKADFISQVAQNAGLTKKDAGAATDAVISTITEVLAKGDSISFIGFGTFSTTERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFK 84
          R   T + +K+   RV  FK
Sbjct: 61 RVPSTGKTIKVPATRVAKFK 80


>gi|299135887|ref|ZP_07029071.1| histone family protein DNA-binding protein [Acidobacterium sp.
          MP5ACTX8]
 gi|298602011|gb|EFI58165.1| histone family protein DNA-binding protein [Acidobacterium sp.
          MP5ACTX8]
          Length = 98

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 45/90 (50%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K IT++ LV+ ++++  L+ K +  F+  L         +     I         ++ 
Sbjct: 1  MAKGITKTQLVRLLAEKLELTNKQTAAFLELLAETAVKETKKNGEFTIPGIGKLVKAERK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          +RVGRN QT + +KI  + VV F+ + + K
Sbjct: 61 ARVGRNPQTGEAIKIKAKTVVKFRVAKVAK 90


>gi|260770646|ref|ZP_05879577.1| DNA-binding protein HU-alpha [Vibrio furnissii CIP 102972]
 gi|260614372|gb|EEX39560.1| DNA-binding protein HU-alpha [Vibrio furnissii CIP 102972]
 gi|315178408|gb|ADT85322.1| DNA-binding protein HU [Vibrio furnissii NCTC 11218]
          Length = 90

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 43/86 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +      +  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLGAVEGALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E+KI    V  F A   LK
Sbjct: 61 RNPKTGEEIKIAAANVPAFVAGKALK 86


>gi|237803593|ref|ZP_04591178.1| DNA-binding protein HU, beta subunit [Pseudomonas syringae pv.
          oryzae str. 1_6]
 gi|331025575|gb|EGI05631.1| DNA-binding protein HU, beta subunit [Pseudomonas syringae pv.
          oryzae str. 1_6]
          Length = 90

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  +   +  +   G+++ +  F TF V  + +RVG
Sbjct: 1  MNKSELIDAIAASADIPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I   +   FKA   LK  +
Sbjct: 61 RNPQTGKTLQIAAAKKPGFKAGKALKDAV 89


>gi|325275144|ref|ZP_08141117.1| histone family protein DNA-binding protein [Pseudomonas sp.
          TJI-51]
 gi|324099716|gb|EGB97589.1| histone family protein DNA-binding protein [Pseudomonas sp.
          TJI-51]
          Length = 101

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L   I+++  L+++ + + +  + + I   A+  + + +  F TF  + +G+R G+N
Sbjct: 3  KPELAAVIAEKADLTKEKANQVLNAILDSIT-GALDKDTVTLVGFGTFEKRHRGARTGKN 61

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT Q VKI     V FK    L+
Sbjct: 62 PQTGQPVKIKASNTVAFKPGKNLR 85


>gi|153011966|ref|YP_001373178.1| histone family protein DNA-binding protein [Ochrobactrum anthropi
          ATCC 49188]
 gi|151563854|gb|ABS17349.1| histone family protein DNA-binding protein [Ochrobactrum anthropi
          ATCC 49188]
          Length = 92

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 40/78 (51%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+ E  LS+  +   V ++F +I ++A+ G    I SF  F +K+   R GR
Sbjct: 3  TTNEIADKIASEQNLSKVQAKAIVESVFRQITEAALAGAETSIPSFGKFKLKETPEREGR 62

Query: 66 NLQTNQEVKIDPRRVVVF 83
          N  T   +KI   + + F
Sbjct: 63 NPATGATIKIAAAKKLAF 80


>gi|254435518|ref|ZP_05049025.1| integration host factor, beta subunit [Nitrosococcus oceani
          AFC27]
 gi|207088629|gb|EDZ65901.1| integration host factor, beta subunit [Nitrosococcus oceani
          AFC27]
          Length = 96

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  LS +D    V  L   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLAQRQALLSYRDVELAVKMLLEVMSQALAQGERIEIRGFGSFSLHYRPPRS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  + V  FK    L++R+
Sbjct: 61 GRNPKTGDAVPLSSKYVPHFKPGKELRERV 90


>gi|203284151|ref|YP_002221891.1| HbbU protein [Borrelia duttonii Ly]
 gi|203287689|ref|YP_002222704.1| HbbU protein [Borrelia recurrentis A1]
 gi|201083594|gb|ACH93185.1| HbbU protein [Borrelia duttonii Ly]
 gi|201084909|gb|ACH94483.1| HbbU protein [Borrelia recurrentis A1]
          Length = 108

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSI-----SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           +T+SD+V  I     +    L +K     V   F E+ +S      I+  SF TF + K+
Sbjct: 9   VTKSDIVDQIFLNIKNNNEKLEKKYIRLVVDAFFEELKNSLCVNNVIEFRSFGTFELRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG +  RN QT + V +D   V  F+    LK+R+ 
Sbjct: 69  KGRQNARNPQTGEYVNVDDHHVAYFRPGKDLKERVW 104


>gi|83311122|ref|YP_421386.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1]
 gi|82945963|dbj|BAE50827.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum
           AMB-1]
          Length = 117

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 44/89 (49%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + + DLV  +++  GLS+  +   +   F  I  +   G+ +++  F +F V Q+ ++ G
Sbjct: 27  MNKQDLVNKVAELSGLSKAAADNVIDATFAAITSALKAGDDVRLVGFGSFSVTQRAAKEG 86

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T   +KI   +   F A   LK  +
Sbjct: 87  RNPRTGATIKIAASKAPKFTAGKGLKDAV 115


>gi|89901030|ref|YP_523501.1| histone-like protein DNA-binding protein [Rhodoferax ferrireducens
           T118]
 gi|89345767|gb|ABD69970.1| bacterial nucleoid protein Hbs [Rhodoferax ferrireducens T118]
          Length = 112

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 47/86 (54%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L++ I+    +S+  +TR + +    +  +  +G ++ +  F TF V ++ +RVG
Sbjct: 23  VNKTELIEHIALNADISKAAATRALESAIGAVKITLKKGGSVSLVGFGTFAVGKRAARVG 82

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILK 90
           RN +T   +KI   +V  F+    LK
Sbjct: 83  RNPRTGDAIKIKAAKVPKFRPGKALK 108


>gi|294053548|ref|YP_003547206.1| histone family protein DNA-binding protein [Coraliomargarita
          akajimensis DSM 45221]
 gi|293612881|gb|ADE53036.1| histone family protein DNA-binding protein [Coraliomargarita
          akajimensis DSM 45221]
          Length = 103

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS  +T+ D+V  I ++    +K+    V    + I ++  +G  +++ +F  F V+ + 
Sbjct: 1  MSNNLTKRDIVLDIYEKTDFPQKEVRETVQLTLDAIANALRQGRNVELRNFGVFEVQVRK 60

Query: 61 SRVGRNLQTNQ-EVKIDPRRVVVFKASSILK 90
          SR+GRN    + +V I  R V+ FKA   LK
Sbjct: 61 SRIGRNPNKPETDVVIPTRAVIKFKAGKELK 91


>gi|198276416|ref|ZP_03208947.1| hypothetical protein BACPLE_02611 [Bacteroides plebeius DSM
          17135]
 gi|313146782|ref|ZP_07808975.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
 gi|198270858|gb|EDY95128.1| hypothetical protein BACPLE_02611 [Bacteroides plebeius DSM
          17135]
 gi|313135549|gb|EFR52909.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
          Length = 93

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 42/82 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D++  I++E G+ +  +T  V      + +S + G  + +  F +F +KQ+  +  
Sbjct: 1  MTKADIIARIAQETGIEKSVATTVVEAFMESVRESMIAGNEVFLRGFGSFIIKQRAEKKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    V  FK +
Sbjct: 61 RNISKNTTIVIPAHSVPAFKPA 82


>gi|126663449|ref|ZP_01734446.1| DNA-binding protein HU [Flavobacteria bacterium BAL38]
 gi|126624397|gb|EAZ95088.1| DNA-binding protein HU [Flavobacteria bacterium BAL38]
          Length = 91

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++   G+++  +   + +  + +  +  +G  + +  F ++ V ++ +R G
Sbjct: 1  MNKSELIDAMAASAGITKAAAKLALESFLSNVEGTLNKGGRVSLVGFGSWSVSKRAARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + +KI  + VV FKA + L+  +
Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGAELEGAV 89


>gi|323526327|ref|YP_004228480.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1001]
 gi|323383329|gb|ADX55420.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1001]
          Length = 94

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/94 (21%), Positives = 45/94 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++   G S+  +   +  +   I ++ V+G+ +++  F +F    + +R G
Sbjct: 1  MNKQELIDAVASATGSSKSIAGEAIDAVIGAITEAVVKGDTVQLIGFGSFSQGTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN  T +E+ I   + V F A    K  +    R
Sbjct: 61 RNPATGEEISIAAAKTVKFTAGKGFKDAVNGGAR 94


>gi|225158968|ref|ZP_03725280.1| histone family protein DNA-binding protein [Opitutaceae bacterium
          TAV2]
 gi|224802463|gb|EEG20723.1| histone family protein DNA-binding protein [Opitutaceae bacterium
          TAV2]
          Length = 102

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M   +T+ ++V  I ++ G  +K+    V    + I  +   G  +++ +F    V+++ 
Sbjct: 1  MPANLTKREIVLEIYEKTGFPQKEIVTSVQMTLDIIMRALSEGRNVELRNFGVLEVQRRK 60

Query: 61 SRVGRNL-QTNQEVKIDPRRVVVFKASSILKK 91
          SR+GRN  +   EV I  R VV FK+  ILK+
Sbjct: 61 SRIGRNPNKPEAEVVIPERAVVKFKSGKILKQ 92


>gi|262384108|ref|ZP_06077244.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|301311014|ref|ZP_07216943.1| DNA-binding protein HU [Bacteroides sp. 20_3]
 gi|262295006|gb|EEY82938.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|300831077|gb|EFK61718.1| DNA-binding protein HU [Bacteroides sp. 20_3]
          Length = 91

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSRV 63
          + +S L++ +SK  G + K+  R++    N I     R GE + I  F  +  + + SR+
Sbjct: 1  MNKSQLIEELSKRVG-NDKEEIRYILEELNNIILEKTRAGEKVCIQGFGVYTPRLQTSRL 59

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN ++ + + + PR +V FK +  L K I
Sbjct: 60 ARNPKSGETLMLIPRTIVHFKCAPNLVKEI 89


>gi|302847610|ref|XP_002955339.1| hypothetical protein VOLCADRAFT_83165 [Volvox carteri f.
           nagariensis]
 gi|300259411|gb|EFJ43639.1| hypothetical protein VOLCADRAFT_83165 [Volvox carteri f.
           nagariensis]
          Length = 186

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 48/89 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV  I+KE  +++  +T+   +LFN + ++   G+ + +  F TF  + +  + G
Sbjct: 42  VGKAVLVDQIAKEAEITKAQATKAFDSLFNAVQEAVTSGKRVTVLGFGTFESRLRKEKNG 101

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T + + I       F+AS   K+++
Sbjct: 102 RNPRTGETITIPAATAPAFRASVSFKEKV 130


>gi|284048950|ref|YP_003399289.1| histone family protein DNA-binding protein [Acidaminococcus
          fermentans DSM 20731]
 gi|283953171|gb|ADB47974.1| histone family protein DNA-binding protein [Acidaminococcus
          fermentans DSM 20731]
          Length = 91

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 19/86 (22%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  ++ +  L +KD+ + V    + + ++    + +++  F TF  + + +R G
Sbjct: 1  MNKSELIAEVASKTALPKKDAEKAVNAFIDTVKEAVANKDKVQLIGFGTFEARVRNARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          +N +T + ++I    V  FKA    K
Sbjct: 61 KNPRTGETIEIAEANVPAFKAGKAFK 86


>gi|28870878|ref|NP_793497.1| DNA-binding protein HU-beta [Pseudomonas syringae pv. tomato str.
          DC3000]
 gi|66044995|ref|YP_234836.1| histone-like DNA-binding protein [Pseudomonas syringae pv.
          syringae B728a]
 gi|71736986|ref|YP_273938.1| DNA-binding protein HU-beta [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|77459916|ref|YP_349423.1| nucleoid protein HU beta subunit [Pseudomonas fluorescens Pf0-1]
 gi|213968837|ref|ZP_03396978.1| DNA-binding protein HU, beta subunit [Pseudomonas syringae pv.
          tomato T1]
 gi|257483812|ref|ZP_05637853.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tabaci
          ATCC 11528]
 gi|289627507|ref|ZP_06460461.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          aesculi str. NCPPB3681]
 gi|289649942|ref|ZP_06481285.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          aesculi str. 2250]
 gi|289679418|ref|ZP_06500308.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          syringae FF5]
 gi|298486266|ref|ZP_07004329.1| DNA-binding protein HU-beta [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|301384117|ref|ZP_07232535.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tomato
          Max13]
 gi|302059520|ref|ZP_07251061.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tomato
          K40]
 gi|302135029|ref|ZP_07261019.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tomato
          NCPPB 1108]
 gi|302187981|ref|ZP_07264654.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          syringae 642]
 gi|330808575|ref|YP_004353037.1| DNA-binding protein, beta subunit [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|22532107|gb|AAM97839.1|AF447727_1 DNA binding protein HU-beta [Pseudomonas syringae]
 gi|28854127|gb|AAO57192.1| DNA-binding protein HU-beta [Pseudomonas syringae pv. tomato str.
          DC3000]
 gi|63255702|gb|AAY36798.1| Histone-like bacterial DNA-binding protein [Pseudomonas syringae
          pv. syringae B728a]
 gi|71557539|gb|AAZ36750.1| DNA-binding protein HU-beta [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|77383919|gb|ABA75432.1| DNA-binding protein HU-beta [Pseudomonas fluorescens Pf0-1]
 gi|213926440|gb|EEB59994.1| DNA-binding protein HU, beta subunit [Pseudomonas syringae pv.
          tomato T1]
 gi|298159273|gb|EFI00331.1| DNA-binding protein HU-beta [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|320325364|gb|EFW81431.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          glycinea str. B076]
 gi|320327651|gb|EFW83659.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|327376683|gb|AEA68033.1| Putative DNA-binding protein, beta subunit [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
 gi|330868372|gb|EGH03081.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          aesculi str. 0893_23]
 gi|330878775|gb|EGH12924.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
 gi|330882121|gb|EGH16270.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330889994|gb|EGH22655.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. mori
          str. 301020]
 gi|330939709|gb|EGH43004.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. pisi
          str. 1704B]
 gi|330959390|gb|EGH59650.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          maculicola str. ES4326]
 gi|330963317|gb|EGH63577.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          actinidiae str. M302091]
 gi|330972585|gb|EGH72651.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. aceris
          str. M302273PT]
 gi|330975099|gb|EGH75165.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. aptata
          str. DSM 50252]
 gi|330985642|gb|EGH83745.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          lachrymans str. M301315]
 gi|331012682|gb|EGH92738.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tabaci
          ATCC 11528]
 gi|331019232|gb|EGH99288.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
          Length = 90

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  +   +  +   G+++ +  F TF V  + +R+G
Sbjct: 1  MNKSELIDAIAASADIPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I   +   FKA   LK+ +
Sbjct: 61 RNPQTGKTLEIAAAKKPGFKAGKALKEAV 89


>gi|319789020|ref|YP_004150653.1| histone family protein DNA-binding protein [Thermovibrio
          ammonificans HB-1]
 gi|317113522|gb|ADU96012.1| histone family protein DNA-binding protein [Thermovibrio
          ammonificans HB-1]
          Length = 97

 Score = 43.9 bits (102), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 6/90 (6%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV----RGEAIKISSFATFHV 56
          M+K    ++L + +S++ G  ++     + T   E+ D  V     GE +KI  F  F++
Sbjct: 1  MTKYELVNELRQRVSRKLG--KQVRKELIETTVEELLDLIVFKVFGGEEVKIRGFGKFYL 58

Query: 57 KQKGSRVGRNLQTNQEVKIDPRRVVVFKAS 86
          K+   R  RN +T + V + PR+V  FK S
Sbjct: 59 KEASPRRARNPKTGEVVNVPPRKVFAFKPS 88


>gi|83311178|ref|YP_421442.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1]
 gi|82946019|dbj|BAE50883.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magneticum AMB-1]
          Length = 92

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++    +++ D+   +  +F  I  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKSELINAVADSAKMTKADAGNAIDAVFAAITTAMKSGDDVRLVGFGTFSVSARPAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I   +   F A   LK  I
Sbjct: 61 RNPQTGKTLTIAASKSAKFTAGKSLKDTI 89


>gi|160883569|ref|ZP_02064572.1| hypothetical protein BACOVA_01541 [Bacteroides ovatus ATCC 8483]
 gi|156110982|gb|EDO12727.1| hypothetical protein BACOVA_01541 [Bacteroides ovatus ATCC 8483]
          Length = 88

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K ++ +  LS  ++T  V  +   I ++  +GE++ +  F +F ++++ +R G
Sbjct: 1  MNKSELIKEVALKGQLSFNEATNAVDAIMETIAETMHKGESVTLVGFGSFVIQERKARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N  T   + I  +R V F+  S +K
Sbjct: 61 HNPATGGSMVIPSKRQVKFRPGSKMK 86


>gi|146277321|ref|YP_001167480.1| histone family protein DNA-binding protein [Rhodobacter
          sphaeroides ATCC 17025]
 gi|146278163|ref|YP_001168322.1| histone family protein DNA-binding protein [Rhodobacter
          sphaeroides ATCC 17025]
 gi|145555562|gb|ABP70175.1| histone family protein DNA-binding protein [Rhodobacter
          sphaeroides ATCC 17025]
 gi|145556404|gb|ABP71017.1| histone family protein DNA-binding protein [Rhodobacter
          sphaeroides ATCC 17025]
          Length = 90

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 8/86 (9%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICD---SAVR-GEAIKISSFATFHVKQKG 60
          + +SDLV +++++ G+SR      V T+ +E  D   +AVR G++I ++ F +F  + + 
Sbjct: 4  LNKSDLVSTVAEKVGVSRLA----VQTVLDEAVDQIANAVRCGDSITLTGFGSFKPRHRP 59

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86
          +R GRN +T + V I     + F  S
Sbjct: 60 ARTGRNPRTGEAVAIPASTSIGFTPS 85


>gi|77163719|ref|YP_342244.1| integration host factor, beta subunit [Nitrosococcus oceani ATCC
           19707]
 gi|76882033|gb|ABA56714.1| Integration host factor, beta subunit [Nitrosococcus oceani ATCC
           19707]
          Length = 113

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 4   TITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            +T+S+L++ ++ ++  LS +D    V  L   +  +  +GE I+I  F +F +  +  R
Sbjct: 17  VMTKSELIERLAQRQALLSYRDVELAVKMLLEVMSQALAQGERIEIRGFGSFSLHYRPPR 76

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            GRN +T   V +  + V  FK    L++R+
Sbjct: 77  SGRNPKTGDAVPLSSKYVPHFKPGKELRERV 107


>gi|91228710|ref|ZP_01262623.1| bacterial nucleoid DNA-binding protein [Vibrio alginolyticus
          12G01]
 gi|262392956|ref|YP_003284810.1| DNA-binding protein HU-alpha [Vibrio sp. Ex25]
 gi|269965869|ref|ZP_06179963.1| DNA-binding protein HU [Vibrio alginolyticus 40B]
 gi|91187736|gb|EAS74055.1| bacterial nucleoid DNA-binding protein [Vibrio alginolyticus
          12G01]
 gi|262336550|gb|ACY50345.1| DNA-binding protein HU-alpha [Vibrio sp. Ex25]
 gi|269829533|gb|EEZ83773.1| DNA-binding protein HU [Vibrio alginolyticus 40B]
          Length = 90

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +    + +  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLDGVTGALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  E++I    V  F A   LK+ +
Sbjct: 61 RNPKTGDEIQIAAANVPAFVAGKALKESV 89


>gi|260592146|ref|ZP_05857604.1| DNA-binding protein HU [Prevotella veroralis F0319]
 gi|260535780|gb|EEX18397.1| DNA-binding protein HU [Prevotella veroralis F0319]
          Length = 93

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63
           +T++D++  I+   G+++KD +  V +  + I DS + + E + +  F +F +K +  + 
Sbjct: 1   MTKADIINEIATSTGIAKKDVSAVVESFMDSIKDSLLGKKENVYLRGFGSFIIKHRAEKT 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
            RN+  N  + I       FK +    K  ++DM+ +
Sbjct: 61  ARNISKNTTITIPAHDFPSFKPA----KTFIEDMKNK 93


>gi|228469565|ref|ZP_04054558.1| DNA-binding protein HU [Porphyromonas uenonis 60-3]
 gi|228308915|gb|EEK17590.1| DNA-binding protein HU [Porphyromonas uenonis 60-3]
          Length = 90

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 47/85 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D +K+++ +  L++KD+      +   I +   +GE + +  F +F+V Q+ +R G
Sbjct: 1  MNKTDFIKTVADKAQLTQKDTKAVYEAIVETIHEEMKKGERLTLVGFGSFYVSQRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N ++ + + I   + + FK S+ L
Sbjct: 61 INPRSGKTIDIKASKSIKFKPSTAL 85


>gi|167036347|ref|YP_001671578.1| histone family protein DNA-binding protein [Pseudomonas putida
          GB-1]
 gi|166862835|gb|ABZ01243.1| histone family protein DNA-binding protein [Pseudomonas putida
          GB-1]
          Length = 101

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L   I+++  L+++ + + +  + + I   A+  + + +  F TF  + +G+R G+N
Sbjct: 3  KPELAAVIAEKADLTKEKANQVLNAILDSIT-GALDKDTVTLVGFGTFEKRHRGARTGKN 61

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT + VKI     V FK    LK
Sbjct: 62 PQTGEPVKIKASNTVAFKPGKNLK 85


>gi|333030022|ref|ZP_08458083.1| histone family protein DNA-binding protein [Bacteroides coprosuis
          DSM 18011]
 gi|332740619|gb|EGJ71101.1| histone family protein DNA-binding protein [Bacteroides coprosuis
          DSM 18011]
          Length = 94

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 42/82 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K+ G+ +  +   +    + + DS V  E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEITKKTGIDKVTALNTIEAFMDVVKDSLVNDENVYLRGFGSFIVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK S
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPS 82


>gi|325982744|ref|YP_004295146.1| histone family protein DNA-binding protein [Nitrosomonas sp.
          AL212]
 gi|325532263|gb|ADZ26984.1| histone family protein DNA-binding protein [Nitrosomonas sp.
          AL212]
          Length = 90

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 44/86 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I+K   +S+  +   +      I  +  + E++ +  F TF V  + +R G
Sbjct: 1  MNKSELIEAIAKSAKISKASAGSALDGALTAIKGALKKNESVTLVGFGTFKVGTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI   +V  F A   LK
Sbjct: 61 RNPRTGAAIKIKAAKVPKFSAGKALK 86


>gi|198284191|ref|YP_002220512.1| histone family protein DNA-binding protein [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|198248712|gb|ACH84305.1| histone family protein DNA-binding protein [Acidithiobacillus
          ferrooxidans ATCC 53993]
          Length = 93

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 25 STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84
          + RF+      I       E I I    T H   + +R GRNL T ++++I  RRVV FK
Sbjct: 23 AARFLEAFARTIRAEMHSAEKILIPEVDTLHFTNRSARKGRNLATGEKIQIPARRVVTFK 82

Query: 85 ASSILKKRI 93
          A+   + R+
Sbjct: 83 ATKTFQDRV 91


>gi|295085994|emb|CBK67517.1| Bacterial nucleoid DNA-binding protein [Bacteroides xylanisolvens
          XB1A]
          Length = 95

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 46/82 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D++  +S+E G+ R+     + +    + D+  R  ++ +  F TF +K++ ++  
Sbjct: 1  MTKADIINRVSEELGIDRRTVGLVIESFMKCVKDALGRERSVFLRGFGTFSLKKRAAKKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          +N+Q +  + I  R+V  FK S
Sbjct: 61 QNIQQHTTICIPARKVPHFKPS 82


>gi|118580329|ref|YP_901579.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
 gi|118503039|gb|ABK99521.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
          Length = 88

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 40/86 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++ V +I+ E  + +  +   V        D    G+ I    F TF V ++ +R G
Sbjct: 1  MTKAEFVAAIAAELDVPKNVAAETVEAFLKVTTDLLKAGDKITFPGFGTFGVSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT  E++I   +   F A   LK
Sbjct: 61 RNPQTGAEIQIAASKSGKFTAGKNLK 86


>gi|319776106|ref|YP_004138594.1| Integration host factor beta-subunit [Haemophilus influenzae
          F3047]
 gi|317450697|emb|CBY86917.1| Integration host factor beta-subunit [Haemophilus influenzae
          F3047]
          Length = 94

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ +S K+  L  K+    V  +   I  S  +G+ +++  F +F +  +  R+
Sbjct: 1  MTKSELMEKLSAKQPTLPAKEIENMVKDILEFISQSLEKGDRVEVRGFGSFSLHHRQPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T   V +  + V  FKA   LK
Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELK 87


>gi|167897237|ref|ZP_02484639.1| putative bacterial nucleoid DNA-binding protein [Burkholderia
          pseudomallei 7894]
          Length = 90

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 43/86 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+ +++K   L++  + + V  + + I    +    + +S F TF +  + +R G
Sbjct: 1  MNKSQLIDAVAKHAELTKAQAAQSVDAVLDAIRTGLLEDGDVALSGFGTFGISARAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN  T + ++I   + V FK    LK
Sbjct: 61 RNPATGEAIEIAASKAVKFKPGKALK 86


>gi|226941262|ref|YP_002796336.1| HupB1 [Laribacter hongkongensis HLHK9]
 gi|226716189|gb|ACO75327.1| HupB1 [Laribacter hongkongensis HLHK9]
          Length = 89

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/86 (20%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    L +  + + +  +   + ++  +G+ + +  F +F+V ++  R G
Sbjct: 1  MNKSELIDAIAASADLPKAAAGKALDGMIEALTEALKKGDTVTLVGFGSFYVGERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E+ I   +   F+    LK
Sbjct: 61 RNPKTGEEITIPSAKTPKFRPGKALK 86


>gi|148550580|ref|YP_001260019.1| histone family protein DNA-binding protein [Sphingomonas
          wittichii RW1]
 gi|148502999|gb|ABQ71252.1| histone family protein DNA-binding protein [Sphingomonas
          wittichii RW1]
          Length = 92

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  SDL   ++   G ++ D+ + V  +F  I D+A +GE + ++ F  F VK   +R G
Sbjct: 2  MNNSDLADHLAGATGATKADARKAVDLVFAAIADAAAKGEEVSLNGFGKFKVKDVLAREG 61

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T + +KI   + + F  +  +K R+
Sbjct: 62 RNPATGETIKIAASKKLSFSVAKAVKDRL 90


>gi|291514301|emb|CBK63511.1| Bacterial nucleoid DNA-binding protein [Alistipes shahii WAL
          8301]
          Length = 96

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 43/85 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  I+ + G+ +  +   V      I ++ + GE + +  F +F VK++  +V 
Sbjct: 1  MTKAELVALITHQTGVEKTAAEAVVEAFMRNIKETMIAGEDVFLRGFGSFIVKERAEKVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  + I    +  FK S + 
Sbjct: 61 RNITKNTTMVIPAHSIPAFKPSKVF 85


>gi|56476801|ref|YP_158390.1| integration host factor beta-subunit (ihf-beta) [Aromatoleum
          aromaticum EbN1]
 gi|56312844|emb|CAI07489.1| integration host factor beta-subunit (ihf-beta) [Aromatoleum
          aromaticum EbN1]
          Length = 104

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  +++ F  L  +D+   V  +   + ++  +G  I+I  F +F    +  RV
Sbjct: 1  MTKSELIDRLAQRFPQLVARDAEEAVKVILGTMTNALTQGGRIEIRGFGSFSSSYRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V +  + V  FK+   L++R+
Sbjct: 61 GRNPKSGETVHVSGKYVPHFKSGKELRERV 90


>gi|46202642|ref|ZP_00208599.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magnetotacticum MS-1]
          Length = 91

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  +++  G ++ D+ +    +F  I  +   G+ +++  F +F +  + ++ G
Sbjct: 1  MNKADLVSKVAELAGCTKADADKVTDAVFAAITSALKVGDEVRLVGFGSFSITNRAAKDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   +KI   +   F A   LK  +
Sbjct: 61 RNPRTGATIKIAASKAPKFSAGKALKDAV 89


>gi|224015517|ref|XP_002297410.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220967911|gb|EED86280.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 85

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 44/85 (51%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++ V +++++ G+++ +S   ++ + N I      G+ I +  F TF +  + +R GRN
Sbjct: 1  KAEFVSAVAEKTGMTKAESEVALSAVLNVIATEVAAGKRISLPGFGTFKLNYRAARKGRN 60

Query: 67 LQTNQEVKIDPRRVVVFKASSILKK 91
           +T  E+ I       F AS   K+
Sbjct: 61 PKTGDEIDIKASYSPSFSASKTFKE 85


>gi|251792147|ref|YP_003006867.1| integration host factor subunit beta [Aggregatibacter aphrophilus
          NJ8700]
 gi|247533534|gb|ACS96780.1| integration host factor, beta subunit [Aggregatibacter
          aphrophilus NJ8700]
          Length = 94

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++  + K   +  K     V  +  ++      GE I++  F +F +  +  R+
Sbjct: 1  MTKSELIELLVQKNSNIPVKHVEEAVKAILEQMSYVLESGERIEVRGFGSFSLHCRQPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++VK++ + V  FKA   L++R+
Sbjct: 61 GRNPKTGEQVKLEAKCVPYFKAGKELRERV 90


>gi|85375322|ref|YP_459384.1| integration host factor beta-subunit [Erythrobacter litoralis
          HTCC2594]
 gi|84788405|gb|ABC64587.1| integration host factor beta-subunit [Erythrobacter litoralis
          HTCC2594]
          Length = 92

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L+++++++   L  ++  + V   F+EI    V G  +++  F  F  +++ +R 
Sbjct: 1  MIRSELLQALARDNPDLRAEEIEQVVDIFFDEISRRLVEGGRVELRGFGAFSTREREARQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T + V +  +RV  FK    ++
Sbjct: 61 GRNPRTGEPVSVPAKRVPYFKPGKEMR 87


>gi|294670876|ref|ZP_06735732.1| hypothetical protein NEIELOOT_02580 [Neisseria elongata subsp.
          glycolytica ATCC 29315]
 gi|291307363|gb|EFE48606.1| hypothetical protein NEIELOOT_02580 [Neisseria elongata subsp.
          glycolytica ATCC 29315]
          Length = 104

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 6/95 (6%)

Query: 5  ITRSDLVKSISKEFG------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          +T+S+L+  +++ F       L  KD    V  L + +  S  RG+ I+I  F +F +  
Sbjct: 1  MTKSELMVRLAEVFAQKNGTHLLAKDVEYSVKILVDTMTRSLARGQRIEIRGFGSFDLNH 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          + +R GRN +T  +V +  + V  FK    L++R+
Sbjct: 61 RPARQGRNPKTGDKVSVPEKYVPHFKPGKELRERV 95


>gi|257459443|ref|ZP_05624552.1| DNA-binding protein HU 1 [Campylobacter gracilis RM3268]
 gi|257442868|gb|EEV18002.1| DNA-binding protein HU 1 [Campylobacter gracilis RM3268]
          Length = 98

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          ++D ++ ++ + GLS+KD+   V +    I +  V+G+ I    F +F + ++ +R G+ 
Sbjct: 3  KADFIQVVADKAGLSKKDTVNVVDSALEAIKELLVKGDDISFIGFGSFGIAERAAREGKV 62

Query: 67 LQTNQEVKIDPRRVVVFKASSIL 89
            TN+  K    +VV FK    L
Sbjct: 63 PGTNRTYKSPATKVVKFKVGKQL 85


>gi|46202467|ref|ZP_00208527.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magnetotacticum MS-1]
          Length = 92

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++    +++ D+   +  +F  I  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKSELIAAVADGAKMTKADAGNAIDAVFAAITAAMKSGDDVRLVGFGTFSVSARPAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I   +   F A   LK  I
Sbjct: 61 RNPQTGKALTIAASKSAKFTAGKSLKDTI 89


>gi|304321185|ref|YP_003854828.1| DNA-binding protein HU [Parvularcula bermudensis HTCC2503]
 gi|303300087|gb|ADM09686.1| DNA-binding protein HU [Parvularcula bermudensis HTCC2503]
          Length = 95

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA---IKISSFATFHVKQKGS 61
          +++++ + +++    +S  ++ R V  +F EI     R +      I +F TF + ++ +
Sbjct: 1  MSKAEFISNVAAAGDMSNAEAKRMVELVFGEIEAGLKRAKKDGKYTIGTFGTFTITKRPA 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          R GRN +T +E+KI   + + F+ SS LK
Sbjct: 61 RKGRNPRTGEEIKIKASKSLRFRPSSNLK 89


>gi|126661383|ref|ZP_01732446.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110]
 gi|126617341|gb|EAZ88147.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110]
          Length = 91

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 42/89 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  LVK+I+ E G  +   T+ +      I ++   G+ + +  F TF  + +  R G
Sbjct: 1  MNKEQLVKAIAAETGQPQSVVTKILNATTETIVETVANGDKLTLVGFGTFEPRPRKERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +N QT + + I    +  F A    K+++
Sbjct: 61 KNPQTGESLTIPATTIPAFSAGKAFKEKV 89


>gi|107101236|ref|ZP_01365154.1| hypothetical protein PaerPA_01002269 [Pseudomonas aeruginosa
          PACS2]
          Length = 63

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          G+++ +  F TF VK++ +R GRN QT + +KI   ++  FKA   LK
Sbjct: 12 GDSVVLVGFGTFAVKERAARTGRNPQTGKPIKIAAAKIPGFKAGKALK 59


>gi|28899685|ref|NP_799290.1| DNA-binding protein HU-2 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260364000|ref|ZP_05776734.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus K5030]
 gi|260878153|ref|ZP_05890508.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AN-5034]
 gi|260897884|ref|ZP_05906380.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus Peru-466]
 gi|28807937|dbj|BAC61174.1| DNA-binding protein HU-2 [Vibrio parahaemolyticus RIMD 2210633]
 gi|308085528|gb|EFO35223.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus Peru-466]
 gi|308090217|gb|EFO39912.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AN-5034]
 gi|308115538|gb|EFO53078.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus K5030]
          Length = 91

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 44/91 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +      +  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLEGVTGALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T  E++I    V  F A   LK+   D
Sbjct: 61 RNPKTGDEIQIAAANVPAFVAGKALKEACND 91


>gi|269123561|ref|YP_003306138.1| histone family protein DNA-binding protein [Streptobacillus
          moniliformis DSM 12112]
 gi|268314887|gb|ACZ01261.1| histone family protein DNA-binding protein [Streptobacillus
          moniliformis DSM 12112]
          Length = 93

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++   V+  +K  G ++K S   V      + +  V+GE ++   + +F V+++  R G
Sbjct: 1  MSKKGFVEEYAKLTGETKKRSEELVNAFLETVENLVVKGEDVQFVGWGSFKVQERKEREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T +E+KI  ++V+ FK      +++
Sbjct: 61 INPKTQKEIKIPAKKVLKFKVGKKFAEKV 89


>gi|89067289|ref|ZP_01154802.1| DNA-binding protein HU [Oceanicola granulosus HTCC2516]
 gi|89046858|gb|EAR52912.1| DNA-binding protein HU [Oceanicola granulosus HTCC2516]
          Length = 95

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 47/90 (52%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +T++ LV ++++E G  +K ++  +  + N I      G A+ +      + +++ 
Sbjct: 1  MAKPMTKTQLVAALAEEMGSDKKTASAALDAVTNVITKEVSGGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
           R+ RN  T +++K D  +VV    +  LK
Sbjct: 61 ERMVRNPATGEQIKKDADKVVKMTIAKALK 90


>gi|296116536|ref|ZP_06835146.1| histone family protein DNA-binding protein [Gluconacetobacter
          hansenii ATCC 23769]
 gi|295976748|gb|EFG83516.1| histone family protein DNA-binding protein [Gluconacetobacter
          hansenii ATCC 23769]
          Length = 95

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 46/93 (49%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M K + + +LV ++++   L++  +   V  +F  I  +   G+ +++  F TF    + 
Sbjct: 1  MEKPLNKQELVAAVAENADLAKAKAGEVVDAVFGAIEKALSNGQEVRLVGFGTFVTATRK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +  GRN +T +E+ I     V FK    LK+ +
Sbjct: 61 AAKGRNPRTGEEIDIPASTSVRFKPGKNLKEAV 93


>gi|124007394|ref|ZP_01692101.1| DNA-binding protein HU [Microscilla marina ATCC 23134]
 gi|123987227|gb|EAY26967.1| DNA-binding protein HU [Microscilla marina ATCC 23134]
          Length = 105

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 49/94 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++++  I+++ G+ +      V   F  I +S   GE I +  F +F  K++ +++ 
Sbjct: 1  MTKAEVISEIAEKTGVEKDKVQITVEAFFKVIQNSMENGENIYVRGFGSFINKKRATKIA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN+  N+ + I    V  FK S +  +RI +  +
Sbjct: 61 RNISKNKAMTIPEHYVPSFKPSKVFIERIKNSAK 94


>gi|50365017|ref|YP_053442.1| histone-like DNA-binding protein [Mesoplasma florum L1]
 gi|50363573|gb|AAT75558.1| predicted histone-like DNA-binding protein [Mesoplasma florum L1]
          Length = 90

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ DL+  I     +S+ +    V +LF+ I +    G  + I+ F  F + ++ +R G
Sbjct: 1  MTKKDLINEIIANENISKVECEAVVNSLFDLIIEELSSGNEVSIAGFGKFAISERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T  ++ I   +   FKA+  LK+++
Sbjct: 61 INPSTGDKISIAASKSAKFKAAKQLKEKL 89


>gi|269214903|ref|ZP_06158902.1| integration host factor subunit beta [Neisseria lactamica ATCC
          23970]
 gi|269208725|gb|EEZ75180.1| integration host factor subunit beta [Neisseria lactamica ATCC
          23970]
          Length = 80

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 37/63 (58%)

Query: 31 TLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          +L + +  S  RG+ I+I  F +F +  + +R+GRN +T + V++  + V  FK    L+
Sbjct: 9  SLGDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNPKTGERVEVPEKHVPHFKPGKELR 68

Query: 91 KRI 93
          +R+
Sbjct: 69 ERV 71


>gi|198449285|ref|YP_002221439.1| DNA binding protein HU-beta [Burkholderia phage KS10]
 gi|206559950|ref|YP_002230714.1| histone-like DNA-binding phage protein [Burkholderia cenocepacia
          J2315]
 gi|197725446|gb|ACH72942.1| gp23 [Burkholderia phage KS10]
 gi|198035991|emb|CAR51884.1| histone-like DNA-binding phage protein [Burkholderia cenocepacia
          J2315]
          Length = 90

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 43/89 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+ +++K   L++  + + V  + N I         + +S F TF V  + +R G
Sbjct: 1  MNKSQLIDAVAKNAELTKAQAAQSVEAVLNAIQLGLQEDGDVALSGFGTFAVAARKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T + ++I   + V FK    LK  +
Sbjct: 61 RNPATGESIQIAASKAVKFKPGKALKDAV 89


>gi|223940629|ref|ZP_03632472.1| histone family protein DNA-binding protein [bacterium Ellin514]
 gi|223890710|gb|EEF57228.1| histone family protein DNA-binding protein [bacterium Ellin514]
          Length = 119

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ DLV  IS E GL ++     V    + I ++  +G+ +++ +F  F VK + +R+
Sbjct: 2  TMTKRDLVIRISNETGLVQQQVLDVVQKTLDYIAEALSKGDKVELRNFGVFEVKVRKARI 61

Query: 64 GRNLQTNQ-EVKIDPRRVVVFKASSILKKRI 93
          GRN      +V I  R VV FK    ++  +
Sbjct: 62 GRNPNAPATDVPIPQRSVVKFKPGKEMRAEV 92


>gi|241589902|ref|YP_002979927.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12D]
 gi|240868614|gb|ACS66273.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12D]
          Length = 94

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 43/89 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R DL K+I+     S     R++      + D+   G+ ++I  F TF   ++ +R G
Sbjct: 1  MNRKDLAKAIADRSNTSSAQVMRWLDAFEKVVTDAVASGDVVQIMGFGTFSTSRRRARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T +E+++     V F A S L++ +
Sbjct: 61 HNPGTGEEIQVPAVTTVRFSAGSRLRQAV 89


>gi|221632837|ref|YP_002522059.1| DNA-binding protein HU 1 [Thermomicrobium roseum DSM 5159]
 gi|221156064|gb|ACM05191.1| DNA-binding protein HU 1 [Thermomicrobium roseum DSM 5159]
          Length = 92

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +SDL+K +++     +      V  +F  I ++  +GE + I+ F TF V ++  R GRN
Sbjct: 3  KSDLIKVVAERTNARQSQVAPIVNAVFQTIQETLAKGEEVSIAGFGTFRVSERARRRGRN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           +TN+ ++I  RR   F+  + LK+ +
Sbjct: 63 PRTNEPIEIPARRSPSFRPGTQLKRAV 89


>gi|145590204|ref|YP_001156801.1| histone family protein DNA-binding protein [Polynucleobacter
          necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048610|gb|ABP35237.1| HU family DNA-binding protein [Polynucleobacter necessarius
          subsp. asymbioticus QLW-P1DMWA-1]
          Length = 106

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 19/86 (22%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+ +  +S+  +   + +  + I  +  +G+++++  F TF   ++ +R+G
Sbjct: 13 LNKAELIAAIADDAEISKAKAEFALNSAIDTIIKAVTKGDSVQLIGFGTFASGKRAARMG 72

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + +KI   + V F A    K
Sbjct: 73 RNPKTGEPLKIAAAKTVKFSAGKAFK 98


>gi|67458593|ref|YP_246217.1| integration host factor alpha-subunit [Rickettsia felis
          URRWXCal2]
 gi|75536941|sp|Q4UN06|HLP_RICFE RecName: Full=Histone-like DNA-binding protein
 gi|67004126|gb|AAY61052.1| Integration host factor alpha-subunit [Rickettsia felis
          URRWXCal2]
          Length = 95

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+  +   +S + G S       V T+F  I + A + + + + +F +F VKQK  R 
Sbjct: 2  TITKEKIATMLSSKLGFSNNLCEEIVNTVFFNILEIA-KEQKLTLKNFGSFEVKQKNPRP 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          G N  T   + I+ ++ + F  S+ LK  I
Sbjct: 61 GINFHTKSPIIIESKKNLRFIPSTKLKALI 90


>gi|320096006|ref|ZP_08027619.1| DNA-binding protein HU [Actinomyces sp. oral taxon 178 str.
          F0338]
 gi|319977077|gb|EFW08807.1| DNA-binding protein HU [Actinomyces sp. oral taxon 178 str.
          F0338]
          Length = 93

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 48/90 (53%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R++LV  I++   L++  +   +    + + +S  +GE +K++   +    ++ +R 
Sbjct: 2  SVNRTELVAQIAERANLTKVQADAALGAFQDVLVESLSKGEPVKVTGLLSVERVERAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+KI     V   A S LKK +
Sbjct: 62 GRNPRTGEEIKIPAGFGVKLSAGSTLKKAV 91


>gi|301629967|ref|XP_002944103.1| PREDICTED: DNA-binding protein HU-beta-like [Xenopus (Silurana)
           tropicalis]
          Length = 139

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 45/86 (52%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L++ I+    +S+  + R + +    +  +  +G+ + +  F TF V ++ +R G
Sbjct: 50  VNKTELIEHIATHADISKAAAARALESTIEAVKKTLKKGDTVSLVGFGTFAVGKRAARTG 109

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILK 90
           RN +T   +KI   +V  F+    LK
Sbjct: 110 RNPRTGATIKIKAAKVPKFRPGKALK 135


>gi|260062638|ref|YP_003195718.1| DNA-binding protein HU [Robiginitalea biformata HTCC2501]
 gi|88784205|gb|EAR15375.1| DNA-binding protein HU [Robiginitalea biformata HTCC2501]
          Length = 90

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 19/85 (22%), Positives = 47/85 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ + G+++  + + + +    +  S  +G  + +  F ++ V ++ +R G
Sbjct: 1  MNKTELIDAMAADAGITKAAAKKALESFLGNVESSLKKGNRVSLVGFGSWSVSRRNAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN  T + + I  + VV FKA S L
Sbjct: 61 RNPSTGKTIHIPAKNVVKFKAGSEL 85


>gi|218264143|ref|ZP_03478035.1| hypothetical protein PRABACTJOHN_03725 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222261|gb|EEC94911.1| hypothetical protein PRABACTJOHN_03725 [Parabacteroides johnsonii
           DSM 18315]
          Length = 99

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 5/101 (4%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++++V  I+K+ G  ++     V      +  + + G  + +  F +F +K +  +V 
Sbjct: 1   MTKAEIVARIAKQTGAEKEVVMNVVEAFMESVKGAMIEGNEVFLRGFGSFIIKHRAEKVA 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           RN+  N  + I    +  FK S     +   DM   K NKD
Sbjct: 61  RNISQNTTIVIPAHSIPAFKPS-----KAFADMVNGKNNKD 96


>gi|253999167|ref|YP_003051230.1| histone family protein DNA-binding protein [Methylovorus sp.
          SIP3-4]
 gi|313201269|ref|YP_004039927.1| histone family protein DNA-binding protein [Methylovorus sp.
          MP688]
 gi|253985846|gb|ACT50703.1| histone family protein DNA-binding protein [Methylovorus sp.
          SIP3-4]
 gi|312440585|gb|ADQ84691.1| histone family protein DNA-binding protein [Methylovorus sp.
          MP688]
          Length = 90

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  I+K  G+S+  + R +      +  +  +G+ + +  F +F+V ++ +R G
Sbjct: 1  MNKSELIDEIAKAAGISKAAAGRSLDATTAAVTKALKKGDIVTLIGFGSFYVGKRAARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI       F+A   LK
Sbjct: 61 RNPRTGTTIKIKAANSPKFRAGKALK 86


>gi|226329063|ref|ZP_03804581.1| hypothetical protein PROPEN_02966 [Proteus penneri ATCC 35198]
 gi|225202249|gb|EEG84603.1| hypothetical protein PROPEN_02966 [Proteus penneri ATCC 35198]
          Length = 66

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 31/49 (63%)

Query: 42 RGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          +G+ + +  F TF V+ + +R GRN QT +E++I+  +V  F+A   LK
Sbjct: 13 KGDDVALVGFGTFTVRDRAARTGRNPQTGKEIQIEAAKVPAFRAGKGLK 61


>gi|218131132|ref|ZP_03459936.1| hypothetical protein BACEGG_02737 [Bacteroides eggerthii DSM
          20697]
 gi|217986652|gb|EEC52986.1| hypothetical protein BACEGG_02737 [Bacteroides eggerthii DSM
          20697]
          Length = 59

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 28/48 (58%)

Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          G  I I  F TF VK+K  R+  N  T Q + + P+ V+ +K S++LK
Sbjct: 8  GNVISIQGFGTFEVKKKAERISVNPTTKQRMLVPPKLVLTYKPSTLLK 55


>gi|167763122|ref|ZP_02435249.1| hypothetical protein BACSTE_01491 [Bacteroides stercoris ATCC
          43183]
 gi|167699462|gb|EDS16041.1| hypothetical protein BACSTE_01491 [Bacteroides stercoris ATCC
          43183]
          Length = 59

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 28/48 (58%)

Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          G  I I  F TF VK+K  R+  N  T Q + + P+ V+ +K S++LK
Sbjct: 8  GNMISIQGFGTFEVKKKAERISVNPTTKQRMLVPPKLVLTYKPSTLLK 55


>gi|256397147|ref|YP_003118711.1| histone family protein DNA-binding protein [Catenulispora
          acidiphila DSM 44928]
 gi|256363373|gb|ACU76870.1| histone family protein DNA-binding protein [Catenulispora
          acidiphila DSM 44928]
          Length = 232

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 45/92 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+++++ +   S+KD+   V  + + I  S   G  + I+ F +F   ++ +R  
Sbjct: 1  MNKAQLIEAVADKLAASKKDAGDAVDAVLDAIIASVASGTKVSITGFGSFEKVKRPARTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T + VK+       FKA    K  +  D
Sbjct: 61 RNPRTGESVKVKASSAPKFKAGQGFKDMVNGD 92


>gi|156972573|ref|YP_001443480.1| DNA-binding protein [Vibrio harveyi ATCC BAA-1116]
 gi|156524167|gb|ABU69253.1| hypothetical protein VIBHAR_00213 [Vibrio harveyi ATCC BAA-1116]
          Length = 101

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 44/89 (49%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ L+  I+++  LS+  +   +      +  +   G+ +++  F TF V  + +R G
Sbjct: 12  MNKTQLIDFIAEKADLSKAQAKAALEATLEGVTGALKEGDQVQLIGFGTFKVNHRAARTG 71

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T  E++I    V  F A   LK+ +
Sbjct: 72  RNPKTGDEIQIAAANVPAFVAGKALKESV 100


>gi|145593811|ref|YP_001158108.1| histone family protein DNA-binding protein [Salinispora tropica
           CNB-440]
 gi|145303148|gb|ABP53730.1| histone family protein DNA-binding protein [Salinispora tropica
           CNB-440]
          Length = 237

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L+++++   G  RK ++  +  +  E+  +  +GE + I+ F  F  + +G+R  
Sbjct: 18  VNKAELIETLAVRLG-DRKTASAALDAVLTEVQAAVTKGEKVSITGFGAFEKRVRGARTA 76

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T + VK+    V  F+  +  K+ +
Sbjct: 77  RNPRTGEAVKVKKTSVPTFRPGTGFKEMV 105


>gi|227824814|ref|ZP_03989646.1| nucleoid DNA-binding protein [Acidaminococcus sp. D21]
 gi|226905313|gb|EEH91231.1| nucleoid DNA-binding protein [Acidaminococcus sp. D21]
          Length = 91

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 19/86 (22%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  ++ +  + +KD+ + V    + + ++  + + +++  F TF  + + +R G
Sbjct: 1  MNKSELISEVASKTAMPKKDAEKAVNAFIDTVKEAIAQKDKVQLIGFGTFEARVRKARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          +N +T + +KI    V  FKA    K
Sbjct: 61 KNPRTGETIKIKKATVPAFKAGKAFK 86


>gi|328954010|ref|YP_004371344.1| histone family protein DNA-binding protein [Desulfobacca
          acetoxidans DSM 11109]
 gi|328454334|gb|AEB10163.1| histone family protein DNA-binding protein [Desulfobacca
          acetoxidans DSM 11109]
          Length = 90

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 43/89 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +L+  I+    + + D  R +      + D   +   I ++ F TF V ++  R G
Sbjct: 1  MTKGELISQIAVAGQVKKADVERTLNAFIKTMVDILQQQGRISLAGFGTFTVTERREREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + +KI   +VV FK    LK  I
Sbjct: 61 RNPQTGEPIKIAATKVVKFKPGKSLKDTI 89


>gi|302035785|ref|YP_003796107.1| transcriptional dual regulator HU-alpha [Candidatus Nitrospira
          defluvii]
 gi|300603849|emb|CBK40181.1| Transcriptional dual regulator HU-alpha [Candidatus Nitrospira
          defluvii]
          Length = 90

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +L+  ++   G+++  +T  +      +  S  +G+ + + +F TF + ++ +R+G
Sbjct: 1  MTKEELIAKMANSAGITKVAATVALEAFTGAVTTSLKKGKRVTLVNFGTFTISKRKARMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + +KI   R+  F A   LK  +
Sbjct: 61 RNPRTGEALKIPAARIPKFSAGKELKAAV 89


>gi|154149063|ref|YP_001406367.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Campylobacter hominis ATCC BAA-381]
 gi|153805072|gb|ABS52079.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Campylobacter hominis ATCC BAA-381]
          Length = 107

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 50/89 (56%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++ +++++++ G ++K +T  V +    I D  V+G++I    F +F + ++ +R G+ 
Sbjct: 3  KAEFIQAVAEKTGSTKKVATEVVDSALEVISDVLVKGDSISFIGFGSFGLAERAAREGKV 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            TN+  K    +VV FK    LK+ + +
Sbjct: 63 PGTNRTYKSPATKVVKFKVGKQLKEAVAE 91


>gi|91200990|emb|CAJ74047.1| unknown protein [Candidatus Kuenenia stuttgartiensis]
          Length = 103

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 48/91 (52%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T T+ DL + I+++   +     + +    +EI     +G  I++  F  F ++Q+ +R
Sbjct: 2  QTTTKRDLCEKIARKTDNTHMVVKKTIQMFLDEIIGELSQGNRIELRDFGVFEIRQRAAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            RN +T +   +  + VVVFK   ++++++
Sbjct: 62 KARNPRTGEVAFVPSKNVVVFKVGKLMREKV 92


>gi|183602609|ref|ZP_02963974.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
          HN019]
 gi|219683651|ref|YP_002470034.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
          AD011]
 gi|241190683|ref|YP_002968077.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
          Bl-04]
 gi|241196089|ref|YP_002969644.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
          DSM 10140]
 gi|183218250|gb|EDT88896.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
          HN019]
 gi|219621301|gb|ACL29458.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
          AD011]
 gi|240249075|gb|ACS46015.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
          Bl-04]
 gi|240250643|gb|ACS47582.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
          DSM 10140]
 gi|289178420|gb|ADC85666.1| DNA-binding protein HU [Bifidobacterium animalis subsp. lactis
          BB-12]
 gi|295793672|gb|ADG33207.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
          V9]
          Length = 93

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +SDLV  IS++ GL++  +   V    +   ++   GE +K++   +    ++ +R GRN
Sbjct: 5  KSDLVAKISQKSGLTKAQAEAAVNAFRDVFIEAMKNGEGLKLTGLLSAERVKRAARTGRN 64

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           +T + ++I     V   A S+LKK + +
Sbjct: 65 PRTGETIEIPATYGVRISAGSLLKKAVSE 93


>gi|15616918|ref|NP_240131.1| integration host factor beta-subunit [Buchnera aphidicola str.
          APS (Acyrthosiphon pisum)]
 gi|219681672|ref|YP_002468058.1| integration host factor beta-subunit [Buchnera aphidicola str. 5A
          (Acyrthosiphon pisum)]
 gi|219682227|ref|YP_002468611.1| integration host factor beta-subunit [Buchnera aphidicola str.
          Tuc7 (Acyrthosiphon pisum)]
 gi|257471361|ref|ZP_05635360.1| integration host factor subunit beta [Buchnera aphidicola str.
          LSR1 (Acyrthosiphon pisum)]
 gi|11132945|sp|P57394|IHFB_BUCAI RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|254803529|sp|B8D999|IHFB_BUCA5 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|254803530|sp|B8D7K1|IHFB_BUCAT RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|25294346|pir||A84966 integration host factor beta-subunit [imported] - Buchnera sp.
          (strain APS)
 gi|10038982|dbj|BAB13017.1| integration host factor beta-subunit [Buchnera aphidicola str.
          APS (Acyrthosiphon pisum)]
 gi|219621960|gb|ACL30116.1| integration host factor beta-subunit [Buchnera aphidicola str.
          Tuc7 (Acyrthosiphon pisum)]
 gi|219624515|gb|ACL30670.1| integration host factor beta-subunit [Buchnera aphidicola str. 5A
          (Acyrthosiphon pisum)]
 gi|311086045|gb|ADP66127.1| integration host factor subunit beta [Buchnera aphidicola str.
          LL01 (Acyrthosiphon pisum)]
 gi|311086618|gb|ADP66699.1| integration host factor subunit beta [Buchnera aphidicola str.
          TLW03 (Acyrthosiphon pisum)]
 gi|311087201|gb|ADP67281.1| integration host factor subunit beta [Buchnera aphidicola str.
          JF99 (Acyrthosiphon pisum)]
 gi|311087726|gb|ADP67805.1| integration host factor subunit beta [Buchnera aphidicola str.
          JF98 (Acyrthosiphon pisum)]
          Length = 94

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L + I+++   +S K   R    +   +  S   G+ I+I  F +F +  + SR+
Sbjct: 1  MIKSELFERIAEQKINISNKMIERAAKEMLEHMIISLANGKRIEIRGFGSFSLHYRSSRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T + VK++ + V  FK    L+ R
Sbjct: 61 GRNPKTGKSVKLNEKYVPYFKPGKKLRDR 89


>gi|229591359|ref|YP_002873478.1| DNA-binding protein HU-beta [Pseudomonas fluorescens SBW25]
 gi|312961786|ref|ZP_07776284.1| DNA-binding protein HU, beta subunit [Pseudomonas fluorescens
          WH6]
 gi|213521162|gb|ACJ50519.1| DNA-binding protein HU-beta [Pseudomonas fluorescens]
 gi|229363225|emb|CAY50308.1| DNA-binding protein HU-beta [Pseudomonas fluorescens SBW25]
 gi|256556955|gb|ACU83577.1| DNA-binding protein HU-beta [uncultured bacterium HF130_AEPn_2]
 gi|311284045|gb|EFQ62628.1| DNA-binding protein HU, beta subunit [Pseudomonas fluorescens
          WH6]
          Length = 90

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  +   +  +   G+++ +  F TF V  + +R G
Sbjct: 1  MNKSELIDAIAASADIPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I   +   FKA   LK+ +
Sbjct: 61 RNPQTGKALQIAAAKKPGFKAGKALKEAV 89


>gi|238789316|ref|ZP_04633103.1| Integration host factor subunit beta [Yersinia frederiksenii ATCC
          33641]
 gi|238722648|gb|EEQ14301.1| Integration host factor subunit beta [Yersinia frederiksenii ATCC
          33641]
          Length = 94

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +   GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLAGQQSHVPAKVVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V++D + V  FK    L+ R
Sbjct: 61 GRNPKTGTKVELDGKYVPHFKPGKELRDR 89


>gi|71900575|ref|ZP_00682702.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
          Ann-1]
 gi|71729632|gb|EAO31736.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
          Ann-1]
          Length = 69

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 37/62 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++    LS+ ++ R +  + NEI ++  +G+++ +  F TF V+ +  R G
Sbjct: 1  MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKKGDSVTLVGFGTFQVRPRAERPG 60

Query: 65 RN 66
          RN
Sbjct: 61 RN 62


>gi|313185145|gb|ADR50137.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           IT+SD+V  IS         L +K     +   F E+  +      I+  SF TF V K+
Sbjct: 9   ITKSDIVDQISLNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|299147625|ref|ZP_07040689.1| DNA-binding protein HU [Bacteroides sp. 3_1_23]
 gi|298514412|gb|EFI38297.1| DNA-binding protein HU [Bacteroides sp. 3_1_23]
          Length = 88

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K ++ +  LS  ++T  V  +   I ++  +GE++ +  F +F V+++ +R G
Sbjct: 1  MNKSELIKEVALKGQLSFNEATNAVDAIMETIAETMHKGESVTLVGFGSFVVQERKARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N  T   + I  +R V F+  S ++
Sbjct: 61 HNSATGGSMLIPAKRQVKFRPGSKMR 86


>gi|218666551|ref|YP_002426854.1| DNA-binding protein HU family protein [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218518764|gb|ACK79350.1| DNA-binding protein HU family protein [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 192

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%)

Query: 43  GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            E I I    T H   + +R GRNL T ++++I  RRVV FKA+   + R+
Sbjct: 140 AEKILIPEVDTLHFTNRSARKGRNLATGEKIQIPARRVVTFKATKTFQDRV 190


>gi|302035809|ref|YP_003796131.1| integration host factor subunit beta [Candidatus Nitrospira
          defluvii]
 gi|300603873|emb|CBK40205.1| Integration host factor, beta subunit [Candidatus Nitrospira
          defluvii]
          Length = 92

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T++ +++ +S++   L+++ +   V T+F+ I DS   G   +I  F +F ++ +  + 
Sbjct: 1  MTKAQIIERVSEQVTTLTKRQAEIVVNTIFDCIRDSLRNGNKTEIRGFGSFRLRARRMKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
          GRN +T   V +  +RV  FKA   LK+
Sbjct: 61 GRNPKTGATVAVPAKRVPFFKAGKELKE 88


>gi|223039759|ref|ZP_03610044.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Campylobacter rectus RM3267]
 gi|222878951|gb|EEF14047.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Campylobacter rectus RM3267]
          Length = 100

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 46/88 (52%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          ++D +++++++ GLS+KDS + V      I  + V G+++    F TF    + +R  R 
Sbjct: 3  KADFIQAVAEKAGLSKKDSLKVVDAALEVIESALVAGDSVSFIGFGTFGTADRAARKARV 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIM 94
            T + + +   + V FK    LK+ ++
Sbjct: 63 PGTKKVIDVPASKAVKFKVGKKLKEAVV 90


>gi|258620637|ref|ZP_05715674.1| DNA-binding protein HU [Vibrio mimicus VM573]
 gi|258624505|ref|ZP_05719449.1| DNA-binding protein HU [Vibrio mimicus VM603]
 gi|262163814|ref|ZP_06031554.1| DNA-binding protein HU-alpha [Vibrio mimicus VM223]
 gi|262172622|ref|ZP_06040300.1| DNA-binding protein HU-alpha [Vibrio mimicus MB-451]
 gi|262404997|ref|ZP_06081549.1| DNA-binding protein HU-alpha [Vibrio sp. RC586]
 gi|258583202|gb|EEW08007.1| DNA-binding protein HU [Vibrio mimicus VM603]
 gi|258587152|gb|EEW11864.1| DNA-binding protein HU [Vibrio mimicus VM573]
 gi|261893698|gb|EEY39684.1| DNA-binding protein HU-alpha [Vibrio mimicus MB-451]
 gi|262027794|gb|EEY46459.1| DNA-binding protein HU-alpha [Vibrio mimicus VM223]
 gi|262348836|gb|EEY97977.1| DNA-binding protein HU-alpha [Vibrio sp. RC586]
          Length = 90

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  L++  +   +      +  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLTKAQAKAALEATLGAVEGALKEGDQVQLIGFGTFKVNHRSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E+KI    V  F A   LK  I
Sbjct: 61 RNPKTGEEIKIAAANVPAFVAGKALKDAI 89


>gi|224531945|ref|ZP_03672577.1| DNA-binding protein HU [Borrelia valaisiana VS116]
 gi|1280583|gb|AAC73090.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|1280585|gb|AAC73091.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|89145740|gb|ABD62059.1| Hbb [Borrelia valaisiana]
 gi|89145742|gb|ABD62060.1| Hbb [Borrelia valaisiana]
 gi|186966720|gb|ACC96221.1| histone-like protein HBbu [Borrelia sp. QSDS4]
 gi|186966722|gb|ACC96222.1| histone-like protein HBbu [Borrelia sp. QTMP2]
 gi|186966724|gb|ACC96223.1| histone-like protein HBbu [Borrelia sp. QSYSP4]
 gi|186966726|gb|ACC96224.1| histone-like protein HBbu [Borrelia sp. QSYSP3]
 gi|186966728|gb|ACC96225.1| histone-like protein HBbu [Borrelia sp. QLZSP1]
 gi|224511410|gb|EEF81816.1| DNA-binding protein HU [Borrelia valaisiana VS116]
 gi|313185123|gb|ADR50126.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185125|gb|ADR50127.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185129|gb|ADR50129.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185131|gb|ADR50130.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185133|gb|ADR50131.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185135|gb|ADR50132.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185137|gb|ADR50133.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185139|gb|ADR50134.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185141|gb|ADR50135.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185147|gb|ADR50138.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185149|gb|ADR50139.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           IT+SD+V  IS         L +K     +   F E+  +      I+  SF TF V K+
Sbjct: 9   ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|253570783|ref|ZP_04848191.1| DNA-binding protein HU [Bacteroides sp. 1_1_6]
 gi|251839732|gb|EES67815.1| DNA-binding protein HU [Bacteroides sp. 1_1_6]
          Length = 95

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 46/82 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D++  +S+E G+ R+     + +    + D+  R  ++ +  F TF +K++ ++  
Sbjct: 1  MTKADIINRVSEELGIDRRTVGLVIESFMKCVKDALGRERSVFLRGFGTFSLKKRAAKKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          +N+Q +  + I  R++  FK S
Sbjct: 61 QNIQQHTTICIPARKIPHFKPS 82


>gi|260911737|ref|ZP_05918313.1| conserved hypothetical protein [Prevotella sp. oral taxon 472
          str. F0295]
 gi|260634162|gb|EEX52276.1| conserved hypothetical protein [Prevotella sp. oral taxon 472
          str. F0295]
          Length = 96

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 46/85 (54%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          + +  ++++ G ++  +   V  + +E+      G+ I I  F TF VK++  RV  N  
Sbjct: 5  EFITELAQQTGYTQSVTQSLVRNIIDEMAVRFDEGDTISIPGFGTFEVKKRLERVVVNPS 64

Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93
          T Q + + P+ V+ F+ ++ +K+R+
Sbjct: 65 TQQRMLVPPKLVLNFRPTASIKERL 89


>gi|153835064|ref|ZP_01987731.1| DNA-binding protein HU-beta [Vibrio harveyi HY01]
 gi|153838911|ref|ZP_01991578.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ3810]
 gi|260902149|ref|ZP_05910544.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ4037]
 gi|269959588|ref|ZP_06173969.1| DNA-binding protein HU [Vibrio harveyi 1DA3]
 gi|148868460|gb|EDL67566.1| DNA-binding protein HU-beta [Vibrio harveyi HY01]
 gi|149747619|gb|EDM58543.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ3810]
 gi|269835646|gb|EEZ89724.1| DNA-binding protein HU [Vibrio harveyi 1DA3]
 gi|308110155|gb|EFO47695.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ4037]
 gi|328471094|gb|EGF42000.1| DNA-binding protein [Vibrio parahaemolyticus 10329]
          Length = 90

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +      +  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLEGVTGALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  E++I    V  F A   LK+ +
Sbjct: 61 RNPKTGDEIQIAAANVPAFVAGKALKESV 89


>gi|332882318|ref|ZP_08449946.1| DNA-binding protein HRL53 [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332679702|gb|EGJ52671.1| DNA-binding protein HRL53 [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 106

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 49/97 (50%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + + +L  +++++ GL++ ++ +    +   + +   +   I +  F +F VKQK +R G
Sbjct: 1   MNKKELCNALAEKTGLTKTEAQKAFNAVIEIVANEMKKNGRITLIGFGSFSVKQKAARKG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
            N  +   + I  ++VV FK S  L   +    RGRK
Sbjct: 61  MNPTSFAPIDIPAKKVVNFKPSIYLNHLLNVKKRGRK 97


>gi|329963576|ref|ZP_08301055.1| putative DNA-binding protein HU [Bacteroides fluxus YIT 12057]
 gi|328528565|gb|EGF55536.1| putative DNA-binding protein HU [Bacteroides fluxus YIT 12057]
          Length = 59

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 28/48 (58%)

Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          G  I I  F TF VK+K  R+  N  T Q + + P+ V+ +K S++LK
Sbjct: 8  GNVISIQGFGTFEVKKKAERISVNPTTRQRMLVPPKLVLTYKPSTLLK 55


>gi|294776170|ref|ZP_06741659.1| DNA-binding protein HU [Bacteroides vulgatus PC510]
 gi|294449993|gb|EFG18504.1| DNA-binding protein HU [Bacteroides vulgatus PC510]
          Length = 476

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 50/93 (53%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS+ +T  D+++ ++++  +++KD+  FV  +F  I ++ V  + +K+    TF + +  
Sbjct: 1  MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T + ++I     + F   S +K  I
Sbjct: 61 SRESVNVNTGERIEIQGHTKISFTPDSSMKDLI 93


>gi|171464303|ref|YP_001798416.1| histone family protein DNA-binding protein [Polynucleobacter
          necessarius subsp. necessarius STIR1]
 gi|171193841|gb|ACB44802.1| histone family protein DNA-binding protein [Polynucleobacter
          necessarius subsp. necessarius STIR1]
          Length = 106

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 19/86 (22%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+ +  +S+  +   + +    I  +  +G+++++  F TF   ++ +R+G
Sbjct: 13 LNKAELIAAIADDAEISKAKAEFALNSAIENIIKAVTKGDSVQLIGFGTFASSKRAARMG 72

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + +KI   + V F A    K
Sbjct: 73 RNPKTGEPLKIAAAKTVKFSAGKAFK 98


>gi|320109312|ref|YP_004184902.1| histone family protein DNA-binding protein [Terriglobus saanensis
          SP1PR4]
 gi|319927833|gb|ADV84908.1| histone family protein DNA-binding protein [Terriglobus saanensis
          SP1PR4]
          Length = 98

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-----GEAIKISSFATFH 55
          M+K IT++ LV++++++  L+ K S  F    F  I + AV+     GE   I       
Sbjct: 1  MAKGITKTALVRTLAEKLELTNKQSAAF----FEAIAEIAVKETKKNGE-FTIPGIGKLV 55

Query: 56 VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            ++ +R+GRN QT + +KI  + VV F+ +   K  I
Sbjct: 56 KAERKARLGRNPQTGETIKIKAKTVVKFRVAKAAKDAI 93


>gi|189463459|ref|ZP_03012244.1| hypothetical protein BACCOP_04178 [Bacteroides coprocola DSM
          17136]
 gi|265753811|ref|ZP_06089166.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|189429888|gb|EDU98872.1| hypothetical protein BACCOP_04178 [Bacteroides coprocola DSM
          17136]
 gi|263235525|gb|EEZ21049.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 93

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 18/85 (21%), Positives = 43/85 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++V  I+++ G+ ++     V      + D+ + G  + +  F +F +KQ+  +V 
Sbjct: 1  MTKAEIVSRIAQQTGIEKEVVMTVVEAFMENVKDAMIAGNEVFLRGFGSFIIKQRAEKVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  + I    +  FK + + 
Sbjct: 61 RNISKNTTIVIPAHSIPAFKPAKVF 85


>gi|15604549|ref|NP_221067.1| integration host factor alpha-subunit (himA) [Rickettsia
          prowazekii str. Madrid E]
 gi|81554787|sp|Q9ZCL7|HLP_RICPR RecName: Full=Histone-like DNA-binding protein
 gi|3861244|emb|CAA15143.1| INTEGRATION HOST FACTOR ALPHA-SUBUNIT (himA) [Rickettsia
          prowazekii]
 gi|292572345|gb|ADE30260.1| Integration host factor alpha-subunit [Rickettsia prowazekii
          Rp22]
          Length = 95

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT++ +   +S + G S       V T+F+ I + A + + + + +F +F VKQK  R 
Sbjct: 2  TITKNKISLMLSSKLGFSNNLCEAIVNTVFSNILEIA-KVQKLTLKNFGSFEVKQKTPRP 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          G N  T   V I  ++ + F  S  LK  I   M
Sbjct: 61 GINFHTKSPVMIASKKNLRFTPSEKLKALINKSM 94


>gi|150009221|ref|YP_001303964.1| putative histone-like protein [Parabacteroides distasonis ATCC
          8503]
 gi|149937645|gb|ABR44342.1| putative histone-like protein [Parabacteroides distasonis ATCC
          8503]
          Length = 91

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L++ +SK  G  + +    +  L N I +    GE + I  F  +  + + SR+ 
Sbjct: 1  MNKSQLIEELSKRVGNDKAEIRYILEELNNIILEKTRAGEKVCIQGFGVYTPRLQTSRLA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN ++ + + + PR +V FK +  L K I
Sbjct: 61 RNPKSGETLMLIPRTIVHFKCAPNLLKEI 89


>gi|150005791|ref|YP_001300535.1| putative integration host factor IHF alpha subunit [Bacteroides
          vulgatus ATCC 8482]
 gi|149934215|gb|ABR40913.1| putative integration host factor IHF alpha subunit [Bacteroides
          vulgatus ATCC 8482]
          Length = 476

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 50/93 (53%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS+ +T  D+++ ++++  +++KD+  FV  +F  I ++ V  + +K+    TF + +  
Sbjct: 1  MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T + ++I     + F   S +K  I
Sbjct: 61 SRESVNVNTGERIEIQGHTKISFTPDSSMKDLI 93


>gi|317476084|ref|ZP_07935336.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316907722|gb|EFV29424.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 93

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 41/82 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D++  I+++ G+ +  +T  V      + +S + G  + +  F +F +KQK  +  
Sbjct: 1  MTKADIIARIAQDTGIEKSVATTVVEAFMESVRESMIAGNEVFLRGFGSFILKQKAEKKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN   N  + I    V  FK +
Sbjct: 61 RNFSKNTTIVIPAHHVPAFKPA 82


>gi|313185099|gb|ADR50114.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 4   TITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-K 57
            IT+SD+V  IS         L +K     +   F E+  +      I+  SF TF V K
Sbjct: 8   NITKSDIVDQISLNITNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRK 67

Query: 58  QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           +KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 68  RKGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|312884772|ref|ZP_07744473.1| DNA-binding protein HU-alpha [Vibrio caribbenthicus ATCC
          BAA-2122]
 gi|309367685|gb|EFP95236.1| DNA-binding protein HU-alpha [Vibrio caribbenthicus ATCC
          BAA-2122]
          Length = 90

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +    + +  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLDGVTGALKDGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  E++I    V  F A   LK+ +
Sbjct: 61 RNPKTGAEIQIAAANVPAFVAGKALKESV 89


>gi|313185021|gb|ADR50075.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 4   TITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-K 57
            IT+SD+V  IS         L +K     +   F E+  +      I+  SF TF V K
Sbjct: 8   NITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRK 67

Query: 58  QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           +KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 68  RKGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|257094678|ref|YP_003168319.1| histone family protein DNA-binding protein [Candidatus
          Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047202|gb|ACV36390.1| histone family protein DNA-binding protein [Candidatus
          Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 96

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 3/92 (3%)

Query: 5  ITRSDLVKSISKE--FG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +TRS+L+  ++    F  L+ KD    V  +   + ++ V G  I+I  F +F +     
Sbjct: 1  MTRSELITRLAAHSHFAQLTAKDDELTVKAILEGMSEALVSGGRIEIHGFGSFALNDSAP 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R GRN  T + V +  +RV  F     L++R+
Sbjct: 61 RNGRNPMTGETVPVPAKRVPHFTPGKELRERV 92


>gi|254882027|ref|ZP_05254737.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319640965|ref|ZP_07995673.1| integration host factor IHF alpha subunit [Bacteroides sp.
          3_1_40A]
 gi|254834820|gb|EET15129.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317387410|gb|EFV68281.1| integration host factor IHF alpha subunit [Bacteroides sp.
          3_1_40A]
          Length = 476

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 50/93 (53%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS+ +T  D+++ ++++  +++KD+  FV  +F  I ++ V  + +K+    TF + +  
Sbjct: 1  MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T + ++I     + F   S +K  I
Sbjct: 61 SRESVNVNTGERIEIQGHTKISFTPDSSMKDLI 93


>gi|238753504|ref|ZP_04614867.1| Integration host factor subunit beta [Yersinia ruckeri ATCC
          29473]
 gi|238708457|gb|EEQ00812.1| Integration host factor subunit beta [Yersinia ruckeri ATCC
          29473]
          Length = 94

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +   GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLAGQQSHIPAKAVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V+++ + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89


>gi|170719347|ref|YP_001747035.1| histone family protein DNA-binding protein [Pseudomonas putida
          W619]
 gi|169757350|gb|ACA70666.1| histone family protein DNA-binding protein [Pseudomonas putida
          W619]
          Length = 99

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L   I+++  L+++ + + +  + + I   A+  + + +  F TF  + +G+R G+N
Sbjct: 3  KPELAAVIAEKADLTKEKANQVLNAILDSIT-GALDKDTVTLVGFGTFEKRHRGARTGKN 61

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT + VKI     V FK    L++ +
Sbjct: 62 PQTGEPVKIKASNTVAFKPGKNLRESV 88


>gi|308274087|emb|CBX30686.1| DNA-binding protein HU-beta [uncultured Desulfobacterium sp.]
          Length = 100

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 7/93 (7%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTL--FNEICDSAVRGEAIKIS--SFATFHVKQKG 60
           +T+++LV +I+ +  +++   T  V  L  F +    A++ +  K++   F TF   ++ 
Sbjct: 11  MTKAELVDAIAADAKITK---TAAVAALDSFTKNVTKALKSKDGKVTLVGFGTFSKAKRA 67

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           +R GRN QT  E+KI  R VV FKA   LK+ +
Sbjct: 68  ARKGRNPQTGAEIKIKARNVVKFKAGKKLKEAV 100


>gi|160937268|ref|ZP_02084630.1| hypothetical protein CLOBOL_02158 [Clostridium bolteae ATCC
          BAA-613]
 gi|158439832|gb|EDP17581.1| hypothetical protein CLOBOL_02158 [Clostridium bolteae ATCC
          BAA-613]
          Length = 51

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 52 ATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           TF V ++  R  RN +T + V+I PRRV VF+A SILK+ ++   +G
Sbjct: 4  GTFAVAERKGRQRRNPRTGEVVEIKPRRVPVFRAGSILKREVIQGNQG 51


>gi|154250962|ref|YP_001411786.1| histone family DNA-binding protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154154912|gb|ABS62129.1| histone family protein DNA-binding protein [Parvibaculum
           lavamentivorans DS-1]
          Length = 113

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 46/89 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +  S L+  I+++  LS+K +T   +        +  +G  ++++      V+++ +R+G
Sbjct: 25  VPMSKLIAEIAEKHDLSKKAATELFSDFVELTVKNLKKGNKVRLTGLGILQVRKRAARMG 84

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN  T + +KI   + V F+ +  LK+ I
Sbjct: 85  RNPATGEAIKIKASKKVAFRVAKDLKEAI 113


>gi|300021566|ref|YP_003754177.1| histone family protein DNA-binding protein [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523387|gb|ADJ21856.1| histone family protein DNA-binding protein [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 107

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 46/91 (50%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+T   +  ++++   + +K S   +  L   I     +G  I+I       V+++ +R
Sbjct: 17  ETVTLKHIAAALAEAHEIPKKQSIALLEDLVTTIGKHLKKGARIRIGGLGVLQVRKRPAR 76

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           +GRN  T + +KI   + + F+A+  LK+ +
Sbjct: 77  MGRNPATGEAIKIKASKKIAFRAAKELKELV 107


>gi|197103657|ref|YP_002129034.1| integration host factor beta subunit [Phenylobacterium zucineum
           HLK1]
 gi|196477077|gb|ACG76605.1| integration host factor beta subunit [Phenylobacterium zucineum
           HLK1]
          Length = 120

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+L+  +++E   L+++D  R V  +   + ++   G  +++  F    V+ + +R 
Sbjct: 25  MIKSELIAKLAEENPHLTQRDIERVVGVILERMIEALEEGGRVELRGFGALSVRSRDARA 84

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN +T + V +  + V  FK+   L++R+
Sbjct: 85  GRNPRTGEPVDVRAKHVPFFKSGKELRERL 114


>gi|71907290|ref|YP_284877.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB]
 gi|71846911|gb|AAZ46407.1| Histone-like bacterial DNA-binding protein [Dechloromonas
          aromatica RCB]
          Length = 94

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          I RS+L + + + F  L+R D    V  +   I     +G  +++  F +F +  +  R+
Sbjct: 2  IVRSELSQRLHQRFPQLNRGDIDVAVGEILGAIGQQLAKGGRVEVRGFGSFALNYRPPRL 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN  T + V +  +    FKA   L++ +M
Sbjct: 62 GRNPMTGERVAVPAKWTPHFKAGKELRELVM 92


>gi|329963577|ref|ZP_08301056.1| LysM domain protein [Bacteroides fluxus YIT 12057]
 gi|328528566|gb|EGF55537.1| LysM domain protein [Bacteroides fluxus YIT 12057]
          Length = 379

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 47/93 (50%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +   DL+  ++++ G+S+KD+  FV   F  + +S  + + +KI    TF +    
Sbjct: 1  MNEKLNIQDLIDLLAEKHGMSKKDADSFVKEFFLLVEESLEKDKYVKIKGLGTFKLIDVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T + ++I     V F     LK+ I
Sbjct: 61 SRESVNVNTGERIEIQGHTKVTFTPEPSLKEVI 93


>gi|126658610|ref|ZP_01729756.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110]
 gi|172036660|ref|YP_001803161.1| DNA binding protein HU [Cyanothece sp. ATCC 51142]
 gi|126620047|gb|EAZ90770.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110]
 gi|171698114|gb|ACB51095.1| DNA binding protein HU [Cyanothece sp. ATCC 51142]
          Length = 93

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 17/89 (19%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++ +  +++K +   ++     I ++    + + +  F +F  + + +R G
Sbjct: 1  MNKGELIDAVANKAEVTKKQAETVISATIETIMEAVAGDDKVTLVGFGSFEARDRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +TN+++ I   +V  F A  + K+R+
Sbjct: 61 RNPKTNEKMSIPATKVPAFSAGKLFKERV 89


>gi|224534210|ref|ZP_03674788.1| DNA-binding protein HU [Borrelia spielmanii A14S]
 gi|73762238|gb|AAZ83607.1| Hbb [Borrelia spielmanii]
 gi|74476805|gb|ABA08453.1| Hbb [Borrelia spielmanii]
 gi|74476807|gb|ABA08454.1| Hbb [Borrelia spielmanii]
 gi|74476809|gb|ABA08455.1| Hbb [Borrelia spielmanii]
 gi|78482926|emb|CAJ20126.1| hbb protein [Borrelia spielmanii]
 gi|78482928|emb|CAJ20127.1| hbb protein [Borrelia spielmanii]
 gi|224514312|gb|EEF84628.1| DNA-binding protein HU [Borrelia spielmanii A14S]
          Length = 108

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           IT+SD+V  IS         L +K     +   F E+  +      I+  SF TF V K+
Sbjct: 9   ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFQELKSNLCLNNVIEFRSFGTFEVRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|222083260|ref|YP_002542663.1| HNS-type DNA binding protein [Agrobacterium vitis S4]
 gi|221738640|gb|ACM39478.1| HNS-type DNA binding protein [Agrobacterium vitis S4]
          Length = 92

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+ E  L +  +   V ++F +I ++A+ G    I SF  F +K    R GR
Sbjct: 3  TTNEIADKIAAEQNLPKAQAKTIVESVFKQITEAALAGAETSIPSFGKFKLKDTPEREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          N  T   +KI   + + F       K + D + G
Sbjct: 63 NPATGATIKIAASKKLTFTPG----KAVKDALNG 92


>gi|313184981|gb|ADR50055.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           IT+SD+V  IS         L +K     +   F E+  +      I+  SF TF V K+
Sbjct: 9   ITKSDIVDQISLNITNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|74317692|ref|YP_315432.1| histone-like DNA-binding protein [Thiobacillus denitrificans ATCC
          25259]
 gi|74057187|gb|AAZ97627.1| Histone-like DNA-binding protein [Thiobacillus denitrificans ATCC
          25259]
          Length = 90

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    +S+  + R +    + +  +  +G+ + +  F +F+V ++ +R G
Sbjct: 1  MNKSELIDAIADSADVSKAAAGRALEATVDAVKKALKKGDIVTLVGFGSFYVGKRAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI   +V  F+A   LK
Sbjct: 61 RNPRTGASIKIKAAKVPKFRAGKGLK 86


>gi|329954833|ref|ZP_08295850.1| DNA-binding protein HU [Bacteroides clarus YIT 12056]
 gi|328526937|gb|EGF53948.1| DNA-binding protein HU [Bacteroides clarus YIT 12056]
          Length = 59

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          G  I +  F TF VK+K  R+  N  T Q + + P+ V+ +K S++LK
Sbjct: 8  GNTISVQGFGTFEVKKKAERISVNPTTKQRMLVPPKLVLTYKPSTLLK 55


>gi|298384211|ref|ZP_06993771.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
 gi|298482997|ref|ZP_07001178.1| DNA-binding protein HU [Bacteroides sp. D22]
 gi|298262490|gb|EFI05354.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
 gi|298270741|gb|EFI12321.1| DNA-binding protein HU [Bacteroides sp. D22]
 gi|301165255|emb|CBW24826.1| Putative histone-like DNA-binding protein [Bacteroides fragilis
          638R]
          Length = 95

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 45/83 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D++  +S+E G+ R+     + +    + D+  R   + +  F TF +K++ ++  
Sbjct: 1  MTKADIINRVSEELGIDRRTVGLVIESFMKCVKDALGRERIVFLRGFGTFSLKKRAAKKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASS 87
          +N+Q +  + I  R+V  FK S 
Sbjct: 61 QNIQQHTTICIPARKVPHFKPSE 83


>gi|300112900|ref|YP_003759475.1| integration host factor subunit beta [Nitrosococcus watsonii
          C-113]
 gi|299538837|gb|ADJ27154.1| integration host factor, beta subunit [Nitrosococcus watsonii
          C-113]
          Length = 96

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S L++ ++ ++  LS +D    V  L   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSGLIERLAQRQALLSYRDVELAVKMLLEVMSQALAQGERIEIRGFGSFSLHYRPPRS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  + V  FK    L++R+
Sbjct: 61 GRNPKTGDTVPLSSKYVPHFKPGKELRERV 90


>gi|293371796|ref|ZP_06618206.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
 gi|292633248|gb|EFF51819.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
          Length = 88

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K ++ +  LS  ++T  V  +   I ++  +GE + +  F +F ++ + +R G
Sbjct: 1  MNKSELIKEVALKRKLSFNEATNAVDAIMEAIAETMHKGEGVTLVGFGSFVIQGRKARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N  T   + I  +R V F+  S +K
Sbjct: 61 HNPATGGSMLIPAKRQVKFRPGSKMK 86


>gi|33152425|ref|NP_873778.1| integration host factor, beta subunit [Haemophilus ducreyi
          35000HP]
 gi|71152154|sp|Q7VLR8|IHFB_HAEDU RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|33148648|gb|AAP96167.1| integration host factor, beta subunit [Haemophilus ducreyi
          35000HP]
          Length = 93

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 5  ITRSDLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ K I+    L  K     V  +   I  +  + + ++I  F +F +  +  R+
Sbjct: 1  MTKSELIEKLIALNPSLPEKAVEDGVKDILENIMLTLEQAKRVEIRGFGSFSLHYRQPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   VK+D + V  FKA   LK+R+
Sbjct: 61 GRNPKTGASVKLDAKYVPHFKAGKDLKERV 90


>gi|1580711|dbj|BAA11644.1| HupB, beta-subunit of HU [Escherichia coli W3110]
          Length = 54

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          G+ + +  F TF VK++ +R GRN QT +E+ I   +V  F+A   LK  +
Sbjct: 3  GDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAV 53


>gi|312794857|ref|YP_004027779.1| DNA-binding protein HU [Burkholderia rhizoxinica HKI 454]
 gi|312166632|emb|CBW73635.1| DNA-binding protein HU [Burkholderia rhizoxinica HKI 454]
          Length = 92

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++ + G S+  +   + TL   I     +G+++++  F +F   ++ +R G
Sbjct: 1  MNKQELIDAVAAQTGASKAQTGETLDTLLEIIKTVVSKGDSVQLIGFGSFGSGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + +KI   + V F A    K
Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFK 86


>gi|302343037|ref|YP_003807566.1| histone family protein DNA-binding protein [Desulfarculus baarsii
          DSM 2075]
 gi|301639650|gb|ADK84972.1| histone family protein DNA-binding protein [Desulfarculus baarsii
          DSM 2075]
          Length = 93

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 5  ITRSDLVKSISKEFGLSR--KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + DL+ +++ + G       + R V   F  + ++  RGE ++I+ F  + V+ + +R
Sbjct: 1  MNKKDLIAAVAGKLGYGPCAPVTGRVVEAAFEAMAEALGRGEQVRINGFGVWRVRGRKAR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN +T + ++I     V+F+ +  LK R+
Sbjct: 61 EGRNPRTGESIQIPAASGVIFRPADALKGRV 91


>gi|51598493|ref|YP_072681.1| hbbU protein [Borrelia garinii PBi]
 gi|219685851|ref|ZP_03540659.1| DNA-binding protein HU [Borrelia garinii Far04]
 gi|3913405|sp|Q57153|DBH_BORGA RecName: Full=DNA-binding protein HBbu
 gi|1280557|gb|AAC73080.1| histone-like protein HBbu [Borrelia garinii]
 gi|1280559|gb|AAC73081.1| histone-like protein HBbu [Borrelia garinii PBi]
 gi|1280563|gb|AAC73083.1| histone-like protein HBbu [Borrelia garinii]
 gi|1280565|gb|AAC73084.1| histone-like protein HBbu [Borrelia garinii]
 gi|1280567|gb|AAC73086.1| histone-like protein HBbu [Borrelia garinii]
 gi|51573064|gb|AAU07089.1| hbbU protein [Borrelia garinii PBi]
 gi|73762242|gb|AAZ83609.1| Hbb [Borrelia garinii]
 gi|219672625|gb|EED29656.1| DNA-binding protein HU [Borrelia garinii Far04]
 gi|313184979|gb|ADR50054.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184983|gb|ADR50056.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184985|gb|ADR50057.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184987|gb|ADR50058.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184989|gb|ADR50059.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184991|gb|ADR50060.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184993|gb|ADR50061.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184995|gb|ADR50062.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184997|gb|ADR50063.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184999|gb|ADR50064.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185001|gb|ADR50065.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185003|gb|ADR50066.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185005|gb|ADR50067.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185007|gb|ADR50068.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185009|gb|ADR50069.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185011|gb|ADR50070.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185013|gb|ADR50071.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185015|gb|ADR50072.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185017|gb|ADR50073.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185019|gb|ADR50074.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185023|gb|ADR50076.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185025|gb|ADR50077.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185027|gb|ADR50078.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185031|gb|ADR50080.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185035|gb|ADR50082.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185037|gb|ADR50083.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185039|gb|ADR50084.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185041|gb|ADR50085.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185043|gb|ADR50086.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185045|gb|ADR50087.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185047|gb|ADR50088.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185049|gb|ADR50089.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185051|gb|ADR50090.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185053|gb|ADR50091.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185055|gb|ADR50092.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185057|gb|ADR50093.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185059|gb|ADR50094.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185061|gb|ADR50095.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185063|gb|ADR50096.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185065|gb|ADR50097.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185067|gb|ADR50098.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185069|gb|ADR50099.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185071|gb|ADR50100.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185073|gb|ADR50101.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185075|gb|ADR50102.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185077|gb|ADR50103.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185079|gb|ADR50104.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185081|gb|ADR50105.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185083|gb|ADR50106.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185085|gb|ADR50107.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185087|gb|ADR50108.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185089|gb|ADR50109.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185091|gb|ADR50110.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185093|gb|ADR50111.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185095|gb|ADR50112.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185097|gb|ADR50113.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185105|gb|ADR50117.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185107|gb|ADR50118.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185109|gb|ADR50119.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185111|gb|ADR50120.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185113|gb|ADR50121.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185115|gb|ADR50122.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185117|gb|ADR50123.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185119|gb|ADR50124.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185121|gb|ADR50125.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           IT+SD+V  IS         L +K     +   F E+  +      I+  SF TF V K+
Sbjct: 9   ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|224369772|ref|YP_002603936.1| IhfB [Desulfobacterium autotrophicum HRM2]
 gi|223692489|gb|ACN15772.1| IhfB [Desulfobacterium autotrophicum HRM2]
          Length = 91

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  + +   L++ ++   V   F+ + ++    E ++I    +F +K+  S  G
Sbjct: 1  MNKLELISVLKQRADLTKTEAAEIVEIFFDSLTEALANDERVEIRGLCSFFIKEYKSYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  +V I  +++  FK    LK+R+
Sbjct: 61 RNPKTGAKVTIPAKKLPFFKCGKELKERV 89


>gi|303256838|ref|ZP_07342852.1| integration host factor, beta subunit [Burkholderiales bacterium
          1_1_47]
 gi|330998915|ref|ZP_08322642.1| integration host factor, beta subunit [Parasutterella
          excrementihominis YIT 11859]
 gi|302860329|gb|EFL83406.1| integration host factor, beta subunit [Burkholderiales bacterium
          1_1_47]
 gi|329576129|gb|EGG57648.1| integration host factor, beta subunit [Parasutterella
          excrementihominis YIT 11859]
          Length = 100

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 5/94 (5%)

Query: 5  ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          +T+S+L+  ++ +       L+ +D    V ++ N +  +  +G  I+I  F +F +  +
Sbjct: 1  MTKSELIALLAADPAVIGNHLTARDVDDAVNSILNAMTAALAQGSRIEIRGFGSFSLNYR 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            RVGRN ++   V++  + V  FKA   +++R+
Sbjct: 61 PPRVGRNPKSGDTVEVPAKIVPHFKAGKEMRERV 94


>gi|78045437|ref|YP_361687.1| histone-like family DNA-binding protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78033941|emb|CAJ19940.1| histone-like family DNA-binding protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 99

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 23/98 (23%), Positives = 48/98 (48%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +S L  +I+    +++ +++  V T+   +    +    + I+ F  F ++ K  R  
Sbjct: 1   MNKSALASAIAHRHAMTQAEASSIVDTVTEVVALMLLEHGRVNINRFGRFRLQHKPPRQA 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           RN +T + V++  R  V F A+  LK+R +D   G + 
Sbjct: 61  RNPKTGETVQVGERVAVQFTAADELKRRFLDSKNGNRL 98


>gi|3913403|sp|Q45352|DBH_BORPR RecName: Full=DNA-binding protein HBbu
 gi|1280569|gb|AAC73077.1| histone-like protein HBbu [Borrelia parkeri]
          Length = 108

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 5   ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           +T+SD+V  IS         L +K     V   F E+ +S      I+  SF TF + K+
Sbjct: 9   VTKSDIVNQISLNIKNSNEKLEKKYIRLVVDAFFEELKNSLCLNNVIEFRSFGTFELRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
           KG +  RN QT + V +D   V  F+    LK
Sbjct: 69  KGRQNARNPQTGEYVNVDDHHVAYFRPGKDLK 100


>gi|237723843|ref|ZP_04554324.1| DNA-binding protein HU [Bacteroides sp. D4]
 gi|229437858|gb|EEO47935.1| DNA-binding protein HU [Bacteroides dorei 5_1_36/D4]
          Length = 94

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S++VK IS   G+  K     V    NE+  S  + E + +  F +F VK++  +  
Sbjct: 1  MTKSEIVKEISARTGIDGKAVLAVVEGFMNEVKTSLGKEENVYLRGFGSFIVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK S
Sbjct: 61 RNISKNTAMIIPAHNIPAFKPS 82


>gi|281419890|ref|ZP_06250889.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella copri
          DSM 18205]
 gi|281406017|gb|EFB36697.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella copri
          DSM 18205]
          Length = 96

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + +  ++++ G S++D+ + V    + +      GEA+ I +F TF VK++  RV 
Sbjct: 1  MNNKEYIAELAQQTGYSQEDTQKLVRKAIDAMIAEFEDGEAVSIPNFGTFEVKKRMERVV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T +   + P+ V+ F+  + +K+++
Sbjct: 61 VNPTTKKRQLVPPKLVLGFRPVASVKEKL 89


>gi|237712971|ref|ZP_04543452.1| DNA-binding protein HU [Bacteroides sp. D1]
 gi|237717786|ref|ZP_04548267.1| DNA-binding protein HU [Bacteroides sp. 2_2_4]
 gi|256842595|ref|ZP_05548096.1| integration host factor, beta subunit [Parabacteroides sp. D13]
 gi|262409581|ref|ZP_06086122.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22]
 gi|229446946|gb|EEO52737.1| DNA-binding protein HU [Bacteroides sp. D1]
 gi|229452885|gb|EEO58676.1| DNA-binding protein HU [Bacteroides sp. 2_2_4]
 gi|256735732|gb|EEU49065.1| integration host factor, beta subunit [Parabacteroides sp. D13]
 gi|262352595|gb|EEZ01694.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22]
          Length = 94

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S++VK IS   G+  K     V    NE+  S  + E + +  F +F VK++  +  
Sbjct: 1  MTKSEIVKEISARTGIDGKAVLAVVEGFMNEVKTSLGKEENVYLRGFGSFIVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK S
Sbjct: 61 RNISKNTTMIIPAHNIPAFKPS 82


>gi|311742216|ref|ZP_07716026.1| DNA-binding protein HU [Aeromicrobium marinum DSM 15272]
 gi|311314709|gb|EFQ84616.1| DNA-binding protein HU [Aeromicrobium marinum DSM 15272]
          Length = 92

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          I+RSDLV +++++ G ++ ++   ++ L + + DS  +GE + I    +     + +R G
Sbjct: 3  ISRSDLVSALAEKAGTTKTEADAVLSALSDVLLDSVGKGEKVSIPGILSVERVSRAARTG 62

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN  T + ++I     V   A S LK
Sbjct: 63 RNPSTGETIEIPAGFGVKVSAGSKLK 88


>gi|257451488|ref|ZP_05616787.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
 gi|317058069|ref|ZP_07922554.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
 gi|313683745|gb|EFS20580.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
          Length = 92

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 41/73 (56%)

Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80
          ++ ++ + +T+    + + A+  E I  S F  F V +K  R+GRN +T +EV+I  ++ 
Sbjct: 18 TKTEAEKAMTSFLETLEEVALLNENILFSGFGKFEVVEKAERLGRNPKTGEEVRIPAKKS 77

Query: 81 VVFKASSILKKRI 93
          + FK    L +++
Sbjct: 78 MKFKPGKSLDEKL 90


>gi|227877728|ref|ZP_03995764.1| DNA-binding protein HU [Lactobacillus crispatus JV-V01]
 gi|256843583|ref|ZP_05549071.1| nucleoid DNA-binding protein [Lactobacillus crispatus 125-2-CHN]
 gi|256850059|ref|ZP_05555489.1| nucleoid DNA-binding protein [Lactobacillus crispatus MV-1A-US]
 gi|262047347|ref|ZP_06020304.1| DNA-binding protein [Lactobacillus crispatus MV-3A-US]
 gi|293381854|ref|ZP_06627823.1| DNA-binding protein HU [Lactobacillus crispatus 214-1]
 gi|295693326|ref|YP_003601936.1| DNA-binding protein hu [Lactobacillus crispatus ST1]
 gi|227862716|gb|EEJ70199.1| DNA-binding protein HU [Lactobacillus crispatus JV-V01]
 gi|256615003|gb|EEU20204.1| nucleoid DNA-binding protein [Lactobacillus crispatus 125-2-CHN]
 gi|256713031|gb|EEU28022.1| nucleoid DNA-binding protein [Lactobacillus crispatus MV-1A-US]
 gi|260572321|gb|EEX28884.1| DNA-binding protein [Lactobacillus crispatus MV-3A-US]
 gi|290921575|gb|EFD98608.1| DNA-binding protein HU [Lactobacillus crispatus 214-1]
 gi|295031432|emb|CBL50911.1| DNA-binding protein HU [Lactobacillus crispatus ST1]
          Length = 94

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 43/91 (47%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +TI++  LV  I+ +   ++ D    +    + +  +   G  +++  F  F ++ + +R
Sbjct: 2  ETISKKQLVDQIAAKTDATKTDINTILDAYIDVVKSNVAEGNKVQLVGFGAFELRHRAAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN QT +E++I    V  FK     K  +
Sbjct: 62 KGRNPQTGKEIEIAASNVPAFKPGKSFKDEV 92


>gi|224370126|ref|YP_002604290.1| Hbp [Desulfobacterium autotrophicum HRM2]
 gi|223692843|gb|ACN16126.1| Hbp [Desulfobacterium autotrophicum HRM2]
          Length = 89

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+  +S+    S+KD+   V  +   + ++    E++ +  F TF   ++ +R G
Sbjct: 1  MNKGDLINKVSEVLN-SKKDAQTAVDCILATVTEALAEKESVTLVGFGTFKTAERKARKG 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E+ I  R V  F     LK  +
Sbjct: 60 RNPQTGNEIDIPARFVPKFIPGKALKDAV 88


>gi|239617732|ref|YP_002941054.1| histone family protein DNA-binding protein [Kosmotoga olearia TBF
          19.5.1]
 gi|239506563|gb|ACR80050.1| histone family protein DNA-binding protein [Kosmotoga olearia TBF
          19.5.1]
          Length = 90

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +I++   +++KD+ + +  + + I +    GE +++  F TF V ++  R G
Sbjct: 1  MNKKELVAAIAERTHMTKKDAGKILDAIIDIIEEKLAGGEVVRLVGFGTFSVVKRKPRKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T + +KI   +V  F     LK ++
Sbjct: 61 VNPRTKEPIKIPGGKVPKFIPGKELKDKV 89


>gi|295691409|ref|YP_003595102.1| integration host factor subunit beta [Caulobacter segnis ATCC
          21756]
 gi|295433312|gb|ADG12484.1| integration host factor, beta subunit [Caulobacter segnis ATCC
          21756]
          Length = 96

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L+  ++ E   L++KD  R V  +   +  +   G  +++  F    V+ + +R 
Sbjct: 1  MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V++  + V  FK+   L+ R+  D
Sbjct: 61 GRNPRTGEAVEVRAKHVPFFKSGKELRARLNAD 93


>gi|254434179|ref|ZP_05047687.1| DNA-binding protein HU [Nitrosococcus oceani AFC27]
 gi|207090512|gb|EDZ67783.1| DNA-binding protein HU [Nitrosococcus oceani AFC27]
          Length = 119

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 38/77 (49%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           +L   I+K+ G++       +     +I      G+ +++S F  F+ K   +R  RN +
Sbjct: 34  ELAGRIAKQTGMAPDQIEEVLVAFKKQIIADLASGQEVRLSHFGKFYAKHMNAREARNPR 93

Query: 69  TNQEVKIDPRRVVVFKA 85
           T + +++ PR  + FKA
Sbjct: 94  TGEAIQVPPRSYLRFKA 110


>gi|239982533|ref|ZP_04705057.1| putative histone-like DNA-binding protein [Streptomyces albus
           J1074]
 gi|291454376|ref|ZP_06593766.1| histone-like DNA binding protein [Streptomyces albus J1074]
 gi|291357325|gb|EFE84227.1| histone-like DNA binding protein [Streptomyces albus J1074]
          Length = 217

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 7/112 (6%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+++   V  + + +  + V GE + ++ F +F    + +R  
Sbjct: 1   MNKAQLVEAIADKVG-GRQNAAEAVDAVLDAMVRAVVAGERVSVTGFGSFEKVDRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT---SPSGS 113
           RN QT + V++    V  F+A    K  +      +K  K+DV    +P GS
Sbjct: 60  RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGT---KKLPKNDVAVKKAPKGS 108


>gi|239813722|ref|YP_002942632.1| histone family protein DNA-binding protein [Variovorax paradoxus
          S110]
 gi|239800299|gb|ACS17366.1| histone family protein DNA-binding protein [Variovorax paradoxus
          S110]
          Length = 125

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +LV+ I+    +S+ ++ R + T+   I  +  +G+ +++  F TF    + +R G
Sbjct: 1  MNRIELVEKIATAHNVSKAEAARILETVTGSIVAAVKKGDPVQLIGFGTFKQVARAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N Q   ++KI  ++V  F   +  K  I
Sbjct: 61 FNPQAGAKIKIAAQKVPKFVPGAAFKAAI 89


>gi|330994478|ref|ZP_08318403.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1]
 gi|329758478|gb|EGG74997.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1]
          Length = 536

 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
           R+DL      E  LS  D+ + +  +   +  +A+RGE + + +F  F VK   +R GRN
Sbjct: 450 RTDL----GPEADLSNADTRKVIDAVVEAMTQAAIRGEEVTLPNFGKFKVKDVPAREGRN 505

Query: 67  LQTNQEVKIDPRRVVVFKASSILK 90
             T   ++I   R + F  +  LK
Sbjct: 506 PATGATIQIAASRKLGFTPAKALK 529


>gi|261210437|ref|ZP_05924731.1| DNA-binding protein HU-alpha [Vibrio sp. RC341]
 gi|260840495|gb|EEX67061.1| DNA-binding protein HU-alpha [Vibrio sp. RC341]
          Length = 90

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  L++  +   +      +  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLTKAQAKAALEATLGAVEGALKDGDQVQLIGFGTFKVNHRSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E+KI    V  F A   LK  I
Sbjct: 61 RNPKTGEEIKIAAANVPAFVAGKALKDAI 89


>gi|322437337|ref|YP_004219549.1| histone family protein DNA-binding protein [Acidobacterium sp.
          MP5ACTX9]
 gi|321165064|gb|ADW70769.1| histone family protein DNA-binding protein [Acidobacterium sp.
          MP5ACTX9]
          Length = 98

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 47/93 (50%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +T++ LV++++++  L+ K +  F+  L         +     I         ++ 
Sbjct: 1  MAKGMTKTALVRALAEKMELTNKQTAAFLDLLAETAVKETKKNGEFTIPGIGKLVKAERK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +R+GRN QT + +KI  + VV F+ + I K  I
Sbjct: 61 ARLGRNPQTGETIKIKAKTVVKFRVAKIAKDTI 93


>gi|254883542|ref|ZP_05256252.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA]
 gi|254836335|gb|EET16644.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA]
          Length = 93

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 43/82 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++V  IS++ G+ +      V +    + +S V G  + +  F +F +K++  ++ 
Sbjct: 1  MTKAEIVAQISRQSGIEKTVVMTVVESFMENVKESMVAGNEVFLRGFGSFIIKRRAEKMA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  +KI    +  FK +
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPA 82


>gi|187736379|ref|YP_001878491.1| histone family protein DNA-binding protein [Akkermansia
          muciniphila ATCC BAA-835]
 gi|187426431|gb|ACD05710.1| histone family protein DNA-binding protein [Akkermansia
          muciniphila ATCC BAA-835]
          Length = 89

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 5  ITRSDLVKSISKEFGL--SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + ++ L++ I  + G   ++K +   +  +   I +       ++I  F TF  K + +R
Sbjct: 1  MNKAQLIELIQSKLGADTTKKHAEEALAAVLESIKEGVKESGKVQIIGFGTFATKTREAR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN +T   + I   + V FKASS LK
Sbjct: 61 TGRNPKTGNTINIPASKTVAFKASSALK 88


>gi|325168608|ref|YP_004280398.1| DNA binding protein [Agrobacterium sp. H13-3]
 gi|325064331|gb|ADY68020.1| DNA binding protein [Agrobacterium sp. H13-3]
          Length = 92

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 40/85 (47%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++V+ I+ E  L++  +   V T+F  I  +A  G    I  F  F +K    R  R
Sbjct: 3  TTNEIVEKIASEQNLTKAQAKSIVETVFASITTAATSGAETSIPGFGKFKIKDTPEREAR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90
          N  T   +K+   + + F+ +  LK
Sbjct: 63 NPATGATIKVAAAKKLTFQPAKALK 87


>gi|288802260|ref|ZP_06407700.1| DNA-binding protein HU [Prevotella melaninogenica D18]
 gi|302346648|ref|YP_003814946.1| DNA-binding protein HU [Prevotella melaninogenica ATCC 25845]
 gi|288335227|gb|EFC73662.1| DNA-binding protein HU [Prevotella melaninogenica D18]
 gi|302151019|gb|ADK97280.1| DNA-binding protein HU [Prevotella melaninogenica ATCC 25845]
          Length = 92

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63
          +T++D++  I+   G+++KD +  V +    I DS + + E + +  F +F VK +  + 
Sbjct: 1  MTKADIINEIATSTGIAKKDVSAVVESFMETIKDSLLEKKENVYLRGFGSFIVKHRAEKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           RN+  N  + I       FK +    K  ++DM+
Sbjct: 61 ARNISKNTTITIPAHDFPSFKPA----KTFIEDMK 91


>gi|303236678|ref|ZP_07323259.1| DNA-binding protein HU [Prevotella disiens FB035-09AN]
 gi|302483182|gb|EFL46196.1| DNA-binding protein HU [Prevotella disiens FB035-09AN]
          Length = 91

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 48/85 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+   GLS+ D+ + +      I ++ V G+ +++  F T+ V ++ +  G
Sbjct: 1  MNKTELIEKIAAGAGLSKVDAKKALDATTAAIKEALVAGDKVQLVGFGTYSVTERPAHEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N  T ++++I  ++V  FK  + L
Sbjct: 61 INPATKEKIQIAAKKVAKFKPGAEL 85


>gi|111115057|ref|YP_709675.1| hbbU protein [Borrelia afzelii PKo]
 gi|216263785|ref|ZP_03435779.1| small DNA-binding protein Hbb [Borrelia afzelii ACA-1]
 gi|3913406|sp|Q57220|DBH_BORAF RecName: Full=DNA-binding protein HBbu
 gi|1280571|gb|AAC73093.1| histone-like protein HBbu [Borrelia afzelii]
 gi|1280575|gb|AAC73095.1| histone-like protein HBbu [Borrelia afzelii]
 gi|1280577|gb|AAC73096.1| histone-like protein HBbu [Borrelia afzelii]
 gi|1280579|gb|AAC73097.1| histone-like protein HBbu [Borrelia afzelii]
 gi|1280581|gb|AAC73098.1| histone-like protein HBbu [Borrelia afzelii]
 gi|73762244|gb|AAZ83610.1| Hbb [Borrelia afzelii]
 gi|110890331|gb|ABH01499.1| hbbU protein [Borrelia afzelii PKo]
 gi|215979829|gb|EEC20651.1| small DNA-binding protein Hbb [Borrelia afzelii ACA-1]
 gi|313184941|gb|ADR50035.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184947|gb|ADR50038.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184949|gb|ADR50039.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184951|gb|ADR50040.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184953|gb|ADR50041.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184955|gb|ADR50042.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184957|gb|ADR50043.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184959|gb|ADR50044.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184961|gb|ADR50045.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184963|gb|ADR50046.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184965|gb|ADR50047.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184967|gb|ADR50048.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184969|gb|ADR50049.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184971|gb|ADR50050.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184973|gb|ADR50051.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184975|gb|ADR50052.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184977|gb|ADR50053.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V K+
Sbjct: 9   VTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|187478614|ref|YP_786638.1| DNA-binding protein Hu-beta [Bordetella avium 197N]
 gi|115423200|emb|CAJ49731.1| DNA-binding protein Hu-beta [Bordetella avium 197N]
          Length = 90

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 44/86 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+ +  +S+  + R +  L   +  +  +G  + +  F TF V  + +R G
Sbjct: 1  MNKTELIDHIASKADISKAAAGRTLDALIGAVKTTLKKGGTVTLVGFGTFAVSSRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + +KI   +V  F+    LK
Sbjct: 61 RNPRTGETIKIKKAKVPKFRPGKALK 86


>gi|261339246|ref|ZP_05967104.1| hypothetical protein ENTCAN_05482 [Enterobacter cancerogenus ATCC
          35316]
 gi|296103086|ref|YP_003613232.1| integration host factor subunit beta [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
 gi|288319103|gb|EFC58041.1| integration host factor, beta subunit [Enterobacter cancerogenus
          ATCC 35316]
 gi|295057545|gb|ADF62283.1| integration host factor subunit beta [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
 gi|295096387|emb|CBK85477.1| integration host factor, beta subunit [Enterobacter cloacae
          subsp. cloacae NCTC 9394]
          Length = 95

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + S++  +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLASQQPHIPAKAVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V+++ + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89


>gi|160898320|ref|YP_001563902.1| histone family protein DNA-binding protein [Delftia acidovorans
          SPH-1]
 gi|160363904|gb|ABX35517.1| histone family protein DNA-binding protein [Delftia acidovorans
          SPH-1]
          Length = 90

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+    +S+  + R + +    +  +  +G  + +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIANNADISKAAAARALDSTIEAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + +KI   +V  F+    LK
Sbjct: 61 RNPRTGETIKIKAAKVPKFRPGKALK 86


>gi|307566102|ref|ZP_07628560.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
 gi|307345290|gb|EFN90669.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
          Length = 92

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63
          +T++D++  I+   G+S+KD +  V +    I DS + + E + +  F +F VK +  + 
Sbjct: 1  MTKADIINEIATGTGISKKDVSAVVESFMEAIKDSLLEKKENVYLRGFGSFIVKHRAEKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           RN+  N  + I       FK +    K  ++DM+
Sbjct: 61 ARNISKNTTLTIPAHDFPSFKPA----KTFIEDMK 91


>gi|152969496|ref|YP_001334605.1| integration host factor subunit beta [Klebsiella pneumoniae
          subsp. pneumoniae MGH 78578]
 gi|238893968|ref|YP_002918702.1| integration host factor subunit beta [Klebsiella pneumoniae
          NTUH-K2044]
 gi|262040989|ref|ZP_06014211.1| integration host factor subunit beta [Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884]
 gi|330014029|ref|ZP_08307845.1| integration host factor, beta subunit [Klebsiella sp. MS 92-3]
 gi|166918553|sp|A6T704|IHFB_KLEP7 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|150954345|gb|ABR76375.1| integration host factor beta subunit [Klebsiella pneumoniae
          subsp. pneumoniae MGH 78578]
 gi|238546284|dbj|BAH62635.1| integration host factor beta subunit [Klebsiella pneumoniae
          subsp. pneumoniae NTUH-K2044]
 gi|259041683|gb|EEW42732.1| integration host factor subunit beta [Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884]
 gi|328533286|gb|EGF60038.1| integration host factor, beta subunit [Klebsiella sp. MS 92-3]
          Length = 95

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + S++  +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V+++ + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89


>gi|221067879|ref|ZP_03543984.1| histone family protein DNA-binding protein [Comamonas
          testosteroni KF-1]
 gi|264677812|ref|YP_003277718.1| histone-like DNA-binding protein [Comamonas testosteroni CNB-2]
 gi|299531632|ref|ZP_07045037.1| histone-like DNA-binding protein [Comamonas testosteroni S44]
 gi|220712902|gb|EED68270.1| histone family protein DNA-binding protein [Comamonas
          testosteroni KF-1]
 gi|262208324|gb|ACY32422.1| histone-like DNA-binding protein [Comamonas testosteroni CNB-2]
 gi|298720348|gb|EFI61300.1| histone-like DNA-binding protein [Comamonas testosteroni S44]
          Length = 90

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+    +S+  + R + +  + +  +  +G  + +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIANNADISKAAAARALDSTIDAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI   +V  F+    LK
Sbjct: 61 RNPRTGDSIKIKAAKVPKFRPGKALK 86


>gi|238784531|ref|ZP_04628539.1| Integration host factor subunit beta [Yersinia bercovieri ATCC
          43970]
 gi|238792398|ref|ZP_04636032.1| Integration host factor subunit beta [Yersinia intermedia ATCC
          29909]
 gi|238714594|gb|EEQ06598.1| Integration host factor subunit beta [Yersinia bercovieri ATCC
          43970]
 gi|238728324|gb|EEQ19844.1| Integration host factor subunit beta [Yersinia intermedia ATCC
          29909]
          Length = 94

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +   GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLAGQQSHVPAKAVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V+++ + V  FK    L+ R
Sbjct: 61 GRNPKTGAKVELEGKYVPHFKPGKELRDR 89


>gi|157826134|ref|YP_001493854.1| integration host factor alpha-subunit [Rickettsia akari str.
          Hartford]
 gi|157800092|gb|ABV75346.1| Integration host factor alpha-subunit [Rickettsia akari str.
          Hartford]
          Length = 96

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+  +   +S + G S       V T+F+ I + A R + + + +F  F VK K  R 
Sbjct: 2  TITKEKISAMLSSKLGFSNNLCKEIVNTVFSNILEIA-REQKLTLKNFGRFEVKHKNPRP 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          G N  T   V I+ ++ + F  S+ LK
Sbjct: 61 GINFHTKSPVIIESKKSLRFVPSAKLK 87


>gi|307565356|ref|ZP_07627849.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
 gi|307346025|gb|EFN91369.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
          Length = 424

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 38/81 (46%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          L  +I+K+  LS  D+ +FV T+FN I D       +KI    TF ++    R   N+ T
Sbjct: 2  LATAIAKKNNLSNADAIKFVETMFNIIIDELKNSNPVKIKGLGTFKLQSVKPRESVNVNT 61

Query: 70 NQEVKIDPRRVVVFKASSILK 90
           + V I+    + F     +K
Sbjct: 62 GERVLIEGHDKISFTPDQAMK 82


>gi|307297819|ref|ZP_07577625.1| histone family protein DNA-binding protein [Thermotogales
          bacterium mesG1.Ag.4.2]
 gi|306917079|gb|EFN47461.1| histone family protein DNA-binding protein [Thermotogales
          bacterium mesG1.Ag.4.2]
          Length = 90

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  I+++ G+++KD+ + + T+ + I  +  +G+ +++  F TF V  + +R G
Sbjct: 1  MNKKELIAEIAEKTGVTKKDAGKTLDTVIDIIEKTLSKGDVVRLVGFGTFMVASRKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T + + I   +V  F     LK+++
Sbjct: 61 VNPRTKKPITIPGGKVPKFVPGKELKEKV 89


>gi|226941099|ref|YP_002796173.1| HupB2 [Laribacter hongkongensis HLHK9]
 gi|226716026|gb|ACO75164.1| HupB2 [Laribacter hongkongensis HLHK9]
          Length = 90

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +L++ +++   + + ++   V  L   I +    G  I ++    F ++++ +R+G
Sbjct: 1  MTKQELIQRLAERANVGKVETLLVVDALEQLIREELAAGGEIPLARTGKFRLREQAARMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + V I  RR +VF  +  LK
Sbjct: 61 RNPKTGESVMIPARRKIVFTPAKALK 86


>gi|161503890|ref|YP_001571002.1| integration host factor subunit beta [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189045041|sp|A9MHX0|IHFB_SALAR RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|160865237|gb|ABX21860.1| hypothetical protein SARI_01980 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
          Length = 94

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + S++  +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V+++ + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89


>gi|302039319|ref|YP_003799641.1| transcriptional dual regulator HU-beta [Candidatus Nitrospira
          defluvii]
 gi|300607383|emb|CBK43716.1| Transcriptional dual regulator HU-beta [Candidatus Nitrospira
          defluvii]
          Length = 95

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 52/96 (54%), Gaps = 6/96 (6%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR--GEAIKISSFATFHVKQ 58
          M+K++T+S +   ++ + G+++K + +F+    ++    A R    A  +       +  
Sbjct: 1  MAKSMTKSQIADHLAGKAGITKKTAVQFL----DDFAALAYREAKNAFVVPGIGKLVLAN 56

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          + +R+GRN QT + +KI  +RVV F+ + + K  I+
Sbjct: 57 RKARMGRNPQTGEPIKIPAKRVVKFRVAKMAKDSIL 92


>gi|91783523|ref|YP_558729.1| nucleoid protein Hbs [Burkholderia xenovorans LB400]
 gi|186475779|ref|YP_001857249.1| histone family protein DNA-binding protein [Burkholderia phymatum
          STM815]
 gi|91687477|gb|ABE30677.1| bacterial nucleoid protein Hbs [Burkholderia xenovorans LB400]
 gi|184192238|gb|ACC70203.1| histone family protein DNA-binding protein [Burkholderia phymatum
          STM815]
          Length = 90

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+++  +S+  + R +  +   +  +  +G ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIDHIAQQADISKAAAGRALDAVIGGVKGTLKKGGSVTLVGFGTFAVGKRTARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI   +V  F+    LK
Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALK 86


>gi|77165933|ref|YP_344458.1| histone-like DNA-binding protein [Nitrosococcus oceani ATCC 19707]
 gi|76884247|gb|ABA58928.1| Histone-like DNA-binding protein [Nitrosococcus oceani ATCC 19707]
          Length = 109

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 38/77 (49%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           +L   I+K+ G++       +     +I      G+ +++S F  F+ K   +R  RN +
Sbjct: 24  ELAGRIAKQTGMAPDQIEEVLVAFKKQIIADLASGQEVRLSHFGKFYAKHMNAREARNPR 83

Query: 69  TNQEVKIDPRRVVVFKA 85
           T + +++ PR  + FKA
Sbjct: 84  TGEAIQVPPRSYLRFKA 100


>gi|261250477|ref|ZP_05943052.1| DNA-binding protein HU-alpha [Vibrio orientalis CIP 102891]
 gi|260939046|gb|EEX95033.1| DNA-binding protein HU-alpha [Vibrio orientalis CIP 102891]
          Length = 90

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 43/89 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +      +  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLEGVTGALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  E++I    V  F A   LK  +
Sbjct: 61 RNPKTGDEIQIAAANVPAFVAGKALKDAV 89


>gi|87248001|gb|ABD36054.1| Hbb [Borrelia lusitaniae]
 gi|87248003|gb|ABD36055.1| Hbb [Borrelia lusitaniae]
          Length = 108

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V K+
Sbjct: 9   VTKSDVVNQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|89145724|gb|ABD62051.1| Hbb [Borrelia andersonii]
          Length = 108

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  IS         L +K     +   F E+ ++      I+  SF TF V+++
Sbjct: 9   VTKSDIVDQISLNIRNNNLKLEKKCIRLVIDAFFEELKNNLCSNNVIEFRSFGTFEVRKR 68

Query: 60  GSRV-GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
             R+  RN QT + VK+    V  F+    LK+R+ 
Sbjct: 69  RGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|15594577|ref|NP_212366.1| hbbU protein [Borrelia burgdorferi B31]
 gi|195941414|ref|ZP_03086796.1| hbbU protein [Borrelia burgdorferi 80a]
 gi|216264191|ref|ZP_03436183.1| small DNA-binding protein Hbb [Borrelia burgdorferi 156a]
 gi|221217809|ref|ZP_03589277.1| DNA-binding protein HU [Borrelia burgdorferi 72a]
 gi|224532651|ref|ZP_03673272.1| DNA-binding protein HU [Borrelia burgdorferi WI91-23]
 gi|224533805|ref|ZP_03674393.1| DNA-binding protein HU [Borrelia burgdorferi CA-11.2a]
 gi|225549097|ref|ZP_03770072.1| DNA-binding protein HU [Borrelia burgdorferi 94a]
 gi|225550199|ref|ZP_03771159.1| DNA-binding protein HU [Borrelia burgdorferi 118a]
 gi|225552278|ref|ZP_03773218.1| DNA-binding protein HU [Borrelia sp. SV1]
 gi|226321207|ref|ZP_03796744.1| DNA-binding protein HU [Borrelia burgdorferi 29805]
 gi|3913407|sp|Q57267|DBH_BORBU RecName: Full=DNA-binding protein HU; AltName: Full=HBbu
 gi|1280537|gb|AAC73073.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|1280539|gb|AAC73074.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|1280541|gb|AAC73075.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|1280543|gb|AAC73076.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|2688124|gb|AAC66617.1| hbbU protein [Borrelia burgdorferi B31]
 gi|89145710|gb|ABD62044.1| Hbb [Borrelia burgdorferi]
 gi|89145712|gb|ABD62045.1| Hbb [Borrelia burgdorferi]
 gi|89145714|gb|ABD62046.1| Hbb [Borrelia burgdorferi]
 gi|89145716|gb|ABD62047.1| Hbb [Borrelia burgdorferi]
 gi|89145718|gb|ABD62048.1| Hbb [Borrelia burgdorferi]
 gi|89145720|gb|ABD62049.1| Hbb [Borrelia burgdorferi]
 gi|215980664|gb|EEC21471.1| small DNA-binding protein Hbb [Borrelia burgdorferi 156a]
 gi|221192486|gb|EEE18705.1| DNA-binding protein HU [Borrelia burgdorferi 72a]
 gi|224512431|gb|EEF82811.1| DNA-binding protein HU [Borrelia burgdorferi WI91-23]
 gi|224513098|gb|EEF83461.1| DNA-binding protein HU [Borrelia burgdorferi CA-11.2a]
 gi|225369311|gb|EEG98764.1| DNA-binding protein HU [Borrelia burgdorferi 118a]
 gi|225370323|gb|EEG99761.1| DNA-binding protein HU [Borrelia burgdorferi 94a]
 gi|225371276|gb|EEH00706.1| DNA-binding protein HU [Borrelia sp. SV1]
 gi|226233404|gb|EEH32148.1| DNA-binding protein HU [Borrelia burgdorferi 29805]
 gi|312149663|gb|ADQ29734.1| DNA-binding protein HU [Borrelia burgdorferi N40]
 gi|313185151|gb|ADR50140.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|1588686|prf||2209287A hbb gene
          Length = 108

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V K+
Sbjct: 9   VTKSDIVDQISLNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|237737109|ref|ZP_04567590.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
 gi|229420971|gb|EEO36018.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
          Length = 92

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80
          + K +  F+ T+  E+ +   +G+ I    F  F V ++ +R  RN QT +E+K++ ++ 
Sbjct: 22 AEKKAMAFLATI-EEVLE---KGDEISFLGFGKFEVTERAARTCRNPQTGEEMKVEAKKA 77

Query: 81 VVFKASSILKKRI 93
          V FKA   L +++
Sbjct: 78 VKFKAGKALSEKV 90


>gi|162148654|ref|YP_001603115.1| DNA-binding protein HU [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787231|emb|CAP56824.1| putative DNA-binding protein HU [Gluconacetobacter diazotrophicus
          PAl 5]
          Length = 91

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 38/83 (45%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          ++LV  I+    LS+ D+ + V  L   + D+A  G+ + I     F  K   +R GRN 
Sbjct: 4  TELVDHIASAADLSKADARKAVDALVAAVTDAAKAGDEVTIPDLGKFKTKDVPAREGRNP 63

Query: 68 QTNQEVKIDPRRVVVFKASSILK 90
           T   + I   R + F  +  LK
Sbjct: 64 ATGATITIAASRKLTFTPAKALK 86


>gi|149072008|ref|YP_001293578.1| DNA binding protein hu-like protein [Rhodomonas salina]
 gi|134302959|gb|ABO70763.1| DNA binding protein hu-like protein [Rhodomonas salina]
          Length = 92

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLV+ ++K+  L++K+S   +TT+   I  +   GE + +  F +F  +++ +R G
Sbjct: 1  MNKKDLVEIVAKKRNLTKKESEEIITTILETIIKTVSEGEKVTLVGFGSFEARERQAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + ++I   RV  F      K ++ +
Sbjct: 61 RNPKTGERLQIPASRVPTFSVGKFFKDKVSN 91


>gi|1280587|gb|AAC73092.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|89145738|gb|ABD62058.1| Hbb [Borrelia genomosp. 2]
          Length = 108

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V K+
Sbjct: 9   VTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|300727913|ref|ZP_07061291.1| DNA-binding protein HU [Prevotella bryantii B14]
 gi|299774755|gb|EFI71369.1| DNA-binding protein HU [Prevotella bryantii B14]
          Length = 94

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 5/95 (5%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63
          +T++D++  +S++ G+S+K+ +  V +  + +  S + R E + +  F +F +K +  + 
Sbjct: 1  MTKADIIAEVSEQTGMSKKEVSAVVESFMDCVKLSLLERKENVYLRGFGSFVIKHRAEKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           RN+  N  + I    +  FK +    K  +DDM+
Sbjct: 61 ARNISKNTTITIAAHDLPSFKPA----KNFIDDMK 91


>gi|296446427|ref|ZP_06888371.1| histone family protein DNA-binding protein [Methylosinus
          trichosporium OB3b]
 gi|296256062|gb|EFH03145.1| histone family protein DNA-binding protein [Methylosinus
          trichosporium OB3b]
          Length = 94

 Score = 42.4 bits (98), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV+ +++    S+  +T  +  +   I  +  +GE +++  F TF VK++ + VG
Sbjct: 2  VNKLELVEHVAEATDTSKAAATAAIDAVLEGITMALKKGEEVRLVGFGTFSVKKRAAGVG 61

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T +E++I       FK  + LK  +
Sbjct: 62 RNPATGEEIQIPESTSARFKPGATLKAAL 90


>gi|307729641|ref|YP_003906865.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1003]
 gi|307584176|gb|ADN57574.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1003]
          Length = 90

 Score = 42.4 bits (98), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+++  +S+  + R +  +   +  +  +G ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIDHIAQQAEISKAAAGRALEAVIGGVKGTLKKGGSVTLVGFGTFAVGKRTARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI   +V  F+    LK
Sbjct: 61 RNPRTGDAIKIKAAKVPKFRPGKALK 86


>gi|260774395|ref|ZP_05883309.1| DNA-binding protein HU-alpha [Vibrio metschnikovii CIP 69.14]
 gi|260610522|gb|EEX35727.1| DNA-binding protein HU-alpha [Vibrio metschnikovii CIP 69.14]
          Length = 90

 Score = 42.4 bits (98), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 43/86 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +      +  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKVQAKAALEATLGAVEGALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E++I    V  F A   LK
Sbjct: 61 RNPKTGEEIQISAANVPAFVAGKALK 86


>gi|27380036|ref|NP_771565.1| DNA-binding protein HU [Bradyrhizobium japonicum USDA 110]
 gi|27353190|dbj|BAC50190.1| hup [Bradyrhizobium japonicum USDA 110]
          Length = 99

 Score = 42.4 bits (98), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT   L   I++   LS+K +   +T +   I     +G+ ++I       V+++ +R 
Sbjct: 10 TITLKHLAADIAESQDLSKKHAEAVLTDMVELIAKHLKKGDRVRIVGLGILQVRKRAART 69

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN  T + + I   + V F+    LK+ I
Sbjct: 70 GRNPATGEPIHIKASKKVAFRPVKELKEAI 99


>gi|3913402|sp|Q45231|DBH_BORJA RecName: Full=DNA-binding protein HBbu
 gi|1280597|gb|AAC73099.1| histone-like protein HBbu [Borrelia japonica]
 gi|1280599|gb|AAC73100.1| histone-like protein HBbu [Borrelia japonica]
 gi|1280601|gb|AAC73101.1| histone-like protein HBbu [Borrelia japonica]
 gi|1280603|gb|AAC73102.1| histone-like protein HBbu [Borrelia japonica]
 gi|1280605|gb|AAC73103.1| histone-like protein HBbu [Borrelia japonica]
          Length = 108

 Score = 42.4 bits (98), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V K+
Sbjct: 9   VTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCSNNVIEFRSFGTFEVRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|288927531|ref|ZP_06421378.1| integration host factor subunit alpha (IHF-alpha) [Prevotella sp.
          oral taxon 317 str. F0108]
 gi|288330365|gb|EFC68949.1| integration host factor subunit alpha (IHF-alpha) [Prevotella sp.
          oral taxon 317 str. F0108]
          Length = 96

 Score = 42.4 bits (98), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 46/85 (54%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          + +  ++++ G ++  +   V  + +E+      G+ + I  F TF VK++  RV  N  
Sbjct: 5  EFITELAQQTGYTQNVTQTLVRNVIDEMAVRFDEGDVVSIPGFGTFEVKKRLERVVVNPA 64

Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93
          T Q + + P+ V+ F+ ++ +K+R+
Sbjct: 65 TQQRMLVPPKLVLNFRPTASIKERL 89


>gi|206575911|ref|YP_002239439.1| integration host factor, beta subunit [Klebsiella pneumoniae 342]
 gi|288936290|ref|YP_003440349.1| integration host factor subunit beta [Klebsiella variicola At-22]
 gi|290510655|ref|ZP_06550025.1| integration host factor, beta subunit [Klebsiella sp. 1_1_55]
 gi|226709796|sp|B5XY84|IHFB_KLEP3 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|206564969|gb|ACI06745.1| integration host factor, beta subunit [Klebsiella pneumoniae 342]
 gi|288890999|gb|ADC59317.1| integration host factor, beta subunit [Klebsiella variicola
          At-22]
 gi|289777371|gb|EFD85369.1| integration host factor, beta subunit [Klebsiella sp. 1_1_55]
          Length = 95

 Score = 42.4 bits (98), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + S++  +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V+++ + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89


>gi|308272922|emb|CBX29526.1| DNA-binding protein HU-beta [uncultured Desulfobacterium sp.]
          Length = 110

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 7/93 (7%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTL--FNEICDSAVRGEAIKIS--SFATFHVKQKG 60
           +T+++LV +I+ +  +++   T  V  L  F +    A++ +  K++   F TF   ++ 
Sbjct: 21  MTKAELVDAIAADAKITK---TAAVAALDSFTKNVTKALKSKDGKVTLVGFGTFSKAKRA 77

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           +R GRN QT  E+KI  R VV FKA   LK+ +
Sbjct: 78  ARKGRNPQTGAEIKIKARNVVKFKAGKKLKESV 110


>gi|268609259|ref|ZP_06142986.1| nucleoid DNA-binding protein [Ruminococcus flavefaciens FD-1]
          Length = 92

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L+ +++++   ++K++   V  +   I D+   GE + I  F TF V+ +  +  
Sbjct: 1  MTKTELISAVAEKTDFTKKNAESAVNAMIAAITDALASGEKVSIVGFGTFEVRDRKEKQV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N QT + +     +   FKA   LK  +
Sbjct: 61 INPQTKKMMTAPASKAPAFKAGQALKNAV 89


>gi|33594401|ref|NP_882045.1| DNA-binding protein HU-beta [Bordetella pertussis Tohama I]
 gi|33597120|ref|NP_884763.1| DNA-binding protein HU-beta [Bordetella parapertussis 12822]
 gi|33600964|ref|NP_888524.1| DNA-binding protein HU-beta [Bordetella bronchiseptica RB50]
 gi|163857015|ref|YP_001631313.1| DNA-binding protein HU-beta [Bordetella petrii DSM 12804]
 gi|293604392|ref|ZP_06686799.1| HU family DNA-binding protein [Achromobacter piechaudii ATCC
          43553]
 gi|311105151|ref|YP_003978004.1| DNA-binding protein HU-beta [Achromobacter xylosoxidans A8]
 gi|5777374|emb|CAB53382.1| DNA-binding protein Hu-beta [Bordetella pertussis]
 gi|5777382|emb|CAB53380.1| Hu-beta [Bordetella bronchiseptica]
 gi|33564476|emb|CAE43789.1| DNA-binding protein Hu-beta [Bordetella pertussis Tohama I]
 gi|33566571|emb|CAE37828.1| DNA-binding protein Hu-beta [Bordetella parapertussis]
 gi|33575399|emb|CAE32476.1| DNA-binding protein Hu-beta [Bordetella bronchiseptica RB50]
 gi|163260743|emb|CAP43045.1| DNA-binding protein Hu-beta [Bordetella petrii]
 gi|292817269|gb|EFF76343.1| HU family DNA-binding protein [Achromobacter piechaudii ATCC
          43553]
 gi|310759840|gb|ADP15289.1| DNA-binding protein HU-beta [Achromobacter xylosoxidans A8]
 gi|317402747|gb|EFV83294.1| DNA-binding protein Hu-beta [Achromobacter xylosoxidans C54]
 gi|332383812|gb|AEE68659.1| DNA-binding protein HU-beta [Bordetella pertussis CS]
          Length = 90

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 44/86 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+ +  +S+  + R +  L   +  +  +G  + +  F TF V  + +R G
Sbjct: 1  MNKTELIDHIASKADISKAAAGRSLDALIGAVKTTLKKGGTVTLVGFGTFAVSARAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + +KI   +V  F+    LK
Sbjct: 61 RNPRTGETIKIKKAKVPKFRPGKALK 86


>gi|1280547|gb|AAC73087.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|1280549|gb|AAC73088.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|1280551|gb|AAC73089.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V K+
Sbjct: 9   VTKSDVVNQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|197294717|ref|YP_001799258.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
 gi|171854044|emb|CAM12017.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
          Length = 94

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 5/86 (5%)

Query: 9  DLVKSISKEFGLSRKDSTR----FVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          D +K ++++  +S+K++ +    FV  ++ E   S    E + ++ F TF  KQ+ +R G
Sbjct: 5  DFLKILAEKHNVSQKEAAKILDSFVAAIY-ESVQSFEENEKLTLTGFGTFGAKQRTTRQG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          +N +T + + I  ++V VFK S   K
Sbjct: 64 KNPRTGETIDIPAKKVPVFKFSKNFK 89


>gi|1280561|gb|AAC73082.1| histone-like protein HBbu [Borrelia garinii]
          Length = 108

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           IT+SD+V  IS         L +K     +   F E+  +      I+  SF TF V K+
Sbjct: 9   ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG    RN QT + VK+    +  F+    LK+R+ 
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHIAYFRPGKDLKERVW 104


>gi|284928884|ref|YP_003421406.1| nucleoid protein Hbs [cyanobacterium UCYN-A]
 gi|284809343|gb|ADB95048.1| bacterial nucleoid protein Hbs [cyanobacterium UCYN-A]
          Length = 93

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 16/89 (17%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++ +  +++K +   ++     I ++    + + +  F +F  + + +R G
Sbjct: 1  MNKGELIDTVANKADVTKKQADSIISATIETIMEAVAGDDKVTLVGFGSFEARNRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +TN+++ I   +V  F A  + K+++
Sbjct: 61 RNPKTNEKMSIPATKVPAFSAGKLFKEKV 89


>gi|104784354|ref|YP_610852.1| DNA-binding protein HU-alpha [Pseudomonas entomophila L48]
 gi|95113341|emb|CAK18069.1| DNA-binding protein HU-alpha [Pseudomonas entomophila L48]
          Length = 98

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L   I+++  L+++ +   +  + + I   A+  + + +  F TF  + +G+R G+N
Sbjct: 3  KPELAAVIAEKADLTKEKANIVLNAILDSIT-GALDKDTVTLVGFGTFEKRHRGARTGKN 61

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT Q VKI     V FK    L+
Sbjct: 62 PQTGQPVKIKASNTVAFKPGKNLR 85


>gi|322433108|ref|YP_004210357.1| histone family protein DNA-binding protein [Acidobacterium sp.
           MP5ACTX9]
 gi|322433120|ref|YP_004210369.1| histone family protein DNA-binding protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321165335|gb|ADW71039.1| histone family protein DNA-binding protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321165347|gb|ADW71051.1| histone family protein DNA-binding protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 125

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-----GEAIKISSFATFHV 56
           SKT+T++ LV  +S++  LS+K +  F    F+ +  +A++     GE   I        
Sbjct: 30  SKTMTKAALVLLVSEKMELSKKQTAEF----FDLLAATAIQETKKNGE-FTIPGLGKLVK 84

Query: 57  KQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
            Q+ +R+GRN QT + +KI  +  V F+ +   K
Sbjct: 85  AQRAARLGRNPQTGETIKIKAKTAVKFRVAKAAK 118


>gi|262382608|ref|ZP_06075745.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B]
 gi|262295486|gb|EEY83417.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B]
          Length = 95

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRV 63
          + R +LVK+++ +  +++ ++ RFV   + E    A+  + ++ +  F T    ++  R+
Sbjct: 1  MNRRELVKTLADKMSVTQAEAMRFVQA-WEETTTEALESDGSLMLLGFGTLSAWEQTERI 59

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +      I  RR V FK   +L KR+
Sbjct: 60 GRNPRNGVAYMIRARRSVKFKPGKLLLKRL 89


>gi|170692398|ref|ZP_02883561.1| histone family protein DNA-binding protein [Burkholderia graminis
          C4D1M]
 gi|323526044|ref|YP_004228197.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1001]
 gi|170142828|gb|EDT10993.1| histone family protein DNA-binding protein [Burkholderia graminis
          C4D1M]
 gi|323383046|gb|ADX55137.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1001]
          Length = 90

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+++  +S+  + R +  +   +  +  +G ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIDHIAQQAEISKAAAGRALDAVIGGVKGTLKKGGSVTLVGFGTFAVGKRTARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI   +V  F+    LK
Sbjct: 61 RNPRTGDAIKIKAAKVPKFRPGKALK 86


>gi|256829419|ref|YP_003158147.1| histone family protein DNA-binding protein [Desulfomicrobium
          baculatum DSM 4028]
 gi|256578595|gb|ACU89731.1| histone family protein DNA-binding protein [Desulfomicrobium
          baculatum DSM 4028]
          Length = 101

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 18/73 (24%), Positives = 37/73 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  +  E G S +++ R V  +   I +S  +G+ I +    T  V ++  R G
Sbjct: 10 VEKADLIARLKAEMGYSEEEAERVVDAMMESITESLSKGDKINLPGIGTMAVVERSLRKG 69

Query: 65 RNLQTNQEVKIDP 77
           +  T +++K  P
Sbjct: 70 EDHSTGRDIKFSP 82


>gi|219684742|ref|ZP_03539685.1| DNA-binding protein HU [Borrelia garinii PBr]
 gi|219672104|gb|EED29158.1| DNA-binding protein HU [Borrelia garinii PBr]
 gi|313185033|gb|ADR50081.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V K+
Sbjct: 9   VTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|312148159|gb|ADQ30818.1| DNA-binding protein HU [Borrelia burgdorferi JD1]
          Length = 108

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V K+
Sbjct: 9   VTKSDIVDQISLNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 69  KGRLNARNPQTGEYVKVLDHNVAYFRPGKDLKERVW 104


>gi|222080139|ref|YP_002540002.1| HNS-type DNA binding protein [Agrobacterium vitis S4]
 gi|221738784|gb|ACM39563.1| HNS-type DNA binding protein [Agrobacterium vitis S4]
          Length = 92

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 39/85 (45%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+ E  L+R  +   V ++F  I D+A+      I SF  F +K    R GR
Sbjct: 3  TTNEIADKIASEQSLTRAQAKTIVESVFKHITDAALACAETSIPSFGKFKIKDTPERQGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90
          N  T   +KI   + + F     +K
Sbjct: 63 NPATGATIKIAASKKLTFTPGKAVK 87


>gi|238898611|ref|YP_002924292.1| HU, DNA-binding transcriptional regulator, alpha subunit -3
          [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
          pisum)]
 gi|229466370|gb|ACQ68144.1| HU, DNA-binding transcriptional regulator, alpha subunit -3
          [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
          pisum)]
          Length = 114

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 20/95 (21%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I++  G+++  +   +  + + I +S  + E++++  F TF+VK + +R  
Sbjct: 1  MNKAQLIDEIAENAGITKIKANTVLNIILDRITESLKKHESVQLVGFGTFNVKHRDARNA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          RN QT + +++       +  S    K + D ++G
Sbjct: 61 RNPQTGEPIELP----ACYVPSLNFAKALKDALKG 91


>gi|156934598|ref|YP_001438514.1| integration host factor subunit beta [Cronobacter sakazakii ATCC
          BAA-894]
 gi|156532852|gb|ABU77678.1| hypothetical protein ESA_02432 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 100

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + S+   +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 7  MTKSELIERLASQHSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 66

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V+++ + V  FK    L+ R
Sbjct: 67 GRNPKTGDKVELEGKYVPHFKPGKELRDR 95


>gi|237707812|ref|ZP_04538293.1| DNA binding protein HU [Bacteroides sp. 9_1_42FAA]
 gi|229458140|gb|EEO63861.1| DNA binding protein HU [Bacteroides sp. 9_1_42FAA]
          Length = 90

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+K ++++     K+ T  + + F E+  + +R + + I  F TF    + +R+ 
Sbjct: 1  MNKTDLIKMVAEKANKPTKEVTEIIDSFFKELSQN-LREKDVSIKDFGTFKKIIQPARIA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN  T + V++  + VV FK S
Sbjct: 60 RNPATGEPVEVPEKEVVKFKPS 81


>gi|188584610|ref|YP_001928095.1| integration host factor, beta subunit [Methylobacterium populi
          BJ001]
 gi|179348472|gb|ACB83519.1| integration host factor, beta subunit [Methylobacterium populi
          BJ001]
          Length = 94

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 5  ITRSDLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L+ + + +   L  +D    V T+   I  +  RG+ +++  F  F VK + +R 
Sbjct: 1  MIKSELILRLVEQNPHLYARDVEAVVNTILETITAAMERGDRVELRGFGAFSVKHREARQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN ++   V ++ +   VF+    L+ ++ D+
Sbjct: 61 GRNPRSGAAVAVEAKTAPVFRPGKELRLKLQDE 93


>gi|149185138|ref|ZP_01863455.1| integration host factor beta-subunit [Erythrobacter sp. SD-21]
 gi|148831249|gb|EDL49683.1| integration host factor beta-subunit [Erythrobacter sp. SD-21]
          Length = 94

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L+ +I+++   L  ++  + V   F EI      G  +++  F  F  +++ +R 
Sbjct: 2  MIRSELLTAIAEDNSDLRAEEVEQVVDIFFEEISQRLTEGGRVELRGFGAFSTRERQARQ 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V +  ++V  FK    +++R+ ++
Sbjct: 62 GRNPRTGEVVDVPAKKVPYFKPGKEIRERLNEN 94


>gi|118594696|ref|ZP_01552043.1| Integration host factor, beta subunit [Methylophilales bacterium
          HTCC2181]
 gi|118440474|gb|EAV47101.1| Integration host factor, beta subunit [Methylophilales bacterium
          HTCC2181]
          Length = 92

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S L+  ++  F  L  KD+   V  + + +  + +  + I+I  F +F +  + SRV
Sbjct: 1  MTKSKLINILASRFNQLVHKDAELSVKAILDSMSQALINKDRIEIRGFGSFSLNFRPSRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++  +V +  + V  FKA   L+ R+
Sbjct: 61 GRNPKSGAQVHVPEKFVPHFKAGKELRVRV 90


>gi|302522114|ref|ZP_07274456.1| DNA-binding protein HU 2 [Streptomyces sp. SPB78]
 gi|318056528|ref|ZP_07975251.1| putative histone-like DNA-binding protein [Streptomyces sp.
           SA3_actG]
 gi|318076088|ref|ZP_07983420.1| putative histone-like DNA-binding protein [Streptomyces sp.
           SA3_actF]
 gi|302431009|gb|EFL02825.1| DNA-binding protein HU 2 [Streptomyces sp. SPB78]
          Length = 209

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 7/112 (6%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+++   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1   MNKAQLVEAIADKLG-GRQNAADAVDVVLDAIVRATVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT---SPSGS 113
           RN QT + V++    V  F+A    K  +      +K  K+DV    +P GS
Sbjct: 60  RNPQTGERVRVKKTSVPRFRAGQGFKDLVAGT---KKLPKNDVAVKKAPKGS 108


>gi|295836329|ref|ZP_06823262.1| DNA binding protein HU [Streptomyces sp. SPB74]
 gi|197699336|gb|EDY46269.1| DNA binding protein HU [Streptomyces sp. SPB74]
          Length = 209

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 7/112 (6%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+++   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1   MNKAQLVEAIADKLG-GRQNAADAVDVVLDAIVRATVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT---SPSGS 113
           RN QT + V++    V  F+A    K  +      +K  K+DV    +P GS
Sbjct: 60  RNPQTGERVRVKKTSVPRFRAGQGFKDLVAGT---KKLPKNDVAVKKAPKGS 108


>gi|26991989|ref|NP_747414.1| histone family protein DNA-binding protein [Pseudomonas putida
          KT2440]
 gi|148550422|ref|YP_001270524.1| histone family protein DNA-binding protein [Pseudomonas putida
          F1]
 gi|24987121|gb|AAN70878.1|AE016732_3 DNA-binding protein HU-alpha [Pseudomonas putida KT2440]
 gi|148514480|gb|ABQ81340.1| bacterial nucleoid protein HU alpha subunit [Pseudomonas putida
          F1]
 gi|313501287|gb|ADR62653.1| HupA [Pseudomonas putida BIRD-1]
          Length = 99

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L   I+ +  L+++ + + +  + + I   A+  + + +  F TF  + +G+R G+N
Sbjct: 3  KPELAAVIADKADLTKEKANQVLNAILDSIT-GALDKDTVTLVGFGTFEKRHRGARTGKN 61

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           QT + VKI     V FK    L+
Sbjct: 62 PQTGEPVKIKASNTVAFKPGKNLR 85


>gi|296157830|ref|ZP_06840664.1| histone family protein DNA-binding protein [Burkholderia sp.
          Ch1-1]
 gi|295892076|gb|EFG71860.1| histone family protein DNA-binding protein [Burkholderia sp.
          Ch1-1]
          Length = 90

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+++  +S+  + R +  +   +  +  +G ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIDHIAQQADISKAAAGRALDAVIGGVKGTLKQGGSVTLVGFGTFAVGKRTARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI   +V  F+    LK
Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALK 86


>gi|325283874|ref|YP_004256415.1| histone family protein DNA-binding protein [Deinococcus
          proteolyticus MRP]
 gi|324315683|gb|ADY26798.1| histone family protein DNA-binding protein [Deinococcus
          proteolyticus MRP]
          Length = 94

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L   IS++ GLSRK +   V +    + D+  +G  + + +  TF + Q   R G
Sbjct: 6  VAKAELAARISEQTGLSRKQAGDVVASAVGLMVDALKQGRTVGLPNLGTFSISQTSQRQG 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
              T + + I   + V FK S+ L+ ++
Sbjct: 66 VRPGTTERITIPAGKKVRFKISTGLRDQL 94


>gi|187923899|ref|YP_001895541.1| histone family protein DNA-binding protein [Burkholderia
          phytofirmans PsJN]
 gi|187715093|gb|ACD16317.1| histone family protein DNA-binding protein [Burkholderia
          phytofirmans PsJN]
          Length = 90

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 19/86 (22%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++  +S+  + R +  + + +  +  +G ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIDHVAQQADISKAAAGRALDAVIDGVKGTLKKGGSVTLVGFGTFAVGKRTARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI   +V  F+    LK
Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALK 86


>gi|37523114|ref|NP_926491.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421]
 gi|35214117|dbj|BAC91486.1| gll3545 [Gloeobacter violaceus PCC 7421]
          Length = 105

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/92 (22%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 3  KTITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + + R  L++ ++    GL++K +   +      I D+  +G  +K+S F +F V+++ +
Sbjct: 5  EPLNRQQLLQQMASRVDGLTQKTAGAALDAALEVIADALAQGRTVKLSGFGSFQVRRRPA 64

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R   + +T Q V +      VF  +  L++R+
Sbjct: 65 RTNIHPRTGQPVLVPAAWNAVFSPAQALRERL 96


>gi|302344202|ref|YP_003808731.1| histone family protein DNA-binding protein [Desulfarculus baarsii
          DSM 2075]
 gi|301640815|gb|ADK86137.1| histone family protein DNA-binding protein [Desulfarculus baarsii
          DSM 2075]
          Length = 95

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEIC-DSAVRGEAIKISSFATFHVKQKGS 61
          K +T+++++  I+ +  +S++ + +     F EIC D  + G  I+++   TF +K+   
Sbjct: 4  KPMTKAEMIDKIASKADISKR-AAKDALEAFVEICRDEVMAGGTIRVAGLGTFSLKESAP 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASS 87
          R G N  T + ++I  ++ + FK S+
Sbjct: 63 RQGVNPATRKPIEITAKKRMAFKMSA 88


>gi|318056820|ref|ZP_07975543.1| DNA-binding protein HU 1 [Streptomyces sp. SA3_actG]
 gi|318080704|ref|ZP_07988036.1| DNA-binding protein HU 1 [Streptomyces sp. SA3_actF]
          Length = 107

 Score = 42.0 bits (97), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
           + RS+LV +++    ++RKD+   +      + D   +G E + I  F TF    + +R 
Sbjct: 15  MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDVVAKGDEKVTIPGFLTFERTHRAART 74

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKK 91
            RN QT + ++I     V   A S LK+
Sbjct: 75  ARNPQTGEPIQIAAGYSVKVSAGSKLKE 102


>gi|1280545|gb|AAC73085.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|1280593|gb|AAC73106.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 42.0 bits (97), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V K+
Sbjct: 9   VTKSDIVDQISLNIRNNNLKLEKKCIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|313185103|gb|ADR50116.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 42.0 bits (97), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V K+
Sbjct: 9   LTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|294674943|ref|YP_003575559.1| HU family DNA-binding protein [Prevotella ruminicola 23]
 gi|294472674|gb|ADE82063.1| DNA-binding protein, HU family [Prevotella ruminicola 23]
          Length = 90

 Score = 42.0 bits (97), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 41/71 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV+ I+   G+S+ D+ + +      I D+ V+G+ + +  F TF V ++ +R G
Sbjct: 1  MNKTELVEKIAASAGISKVDAKKALDATVVAIKDALVKGDKVALVGFGTFSVNERPAREG 60

Query: 65 RNLQTNQEVKI 75
           N  T Q++ I
Sbjct: 61 INPLTKQKITI 71


>gi|241763693|ref|ZP_04761742.1| histone family protein DNA-binding protein [Acidovorax
          delafieldii 2AN]
 gi|241367082|gb|EER61456.1| histone family protein DNA-binding protein [Acidovorax
          delafieldii 2AN]
          Length = 90

 Score = 42.0 bits (97), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 44/86 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+    +S+  + R + +    +  +  +G  + +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIANNADISKAAAARALESTIEAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI   +V  F+    LK
Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALK 86


>gi|121609650|ref|YP_997457.1| histone family protein DNA-binding protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121554290|gb|ABM58439.1| histone family protein DNA-binding protein [Verminephrobacter
           eiseniae EF01-2]
          Length = 105

 Score = 42.0 bits (97), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 44/86 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L++ IS    +S+  + R + +    +  +  +G  + +  F TF V ++ +R G
Sbjct: 16  VNKTELIEYISDNADISKAAAARALESTIEAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 75

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILK 90
           RN +T   +KI   +V  F+    LK
Sbjct: 76  RNPRTGSAIKIKAAKVPKFRPGKALK 101


>gi|152965328|ref|YP_001361112.1| histone family protein DNA-binding protein [Kineococcus
          radiotolerans SRS30216]
 gi|151359845|gb|ABS02848.1| histone family protein DNA-binding protein [Kineococcus
          radiotolerans SRS30216]
          Length = 179

 Score = 42.0 bits (97), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++++V ++    G  RK +   V  +   I  +  +G+ + IS F TF  + + +R G
Sbjct: 1  MNKAEMVDALEARLG-GRKQAVSAVEAVVELIQLTVAKGDKVAISGFGTFEKQARNARTG 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + VKI    V  F+  +  K+ + D
Sbjct: 60 RNPRTGEAVKIKKTSVPRFRPGTAFKEIVSD 90


>gi|260597310|ref|YP_003209881.1| integration host factor subunit beta [Cronobacter turicensis
          z3032]
 gi|260216487|emb|CBA29645.1| Integration host factor subunit beta [Cronobacter turicensis
          z3032]
          Length = 94

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + S+   +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLASQHSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V+++ + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89


>gi|226943962|ref|YP_002799035.1| histone-like DNA-binding protein [Azotobacter vinelandii DJ]
 gi|226718889|gb|ACO78060.1| histone-like bacterial DNA-binding protein [Azotobacter
          vinelandii DJ]
          Length = 55

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%)

Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          G  + +  F  F VK++ +R GRN  T QE++I   RV  FKA   LK+ +
Sbjct: 4  GREVSLVGFGAFTVKERAARTGRNPSTGQELEIRAARVPGFKAGKGLKEAV 54


>gi|3913401|sp|Q44625|DBH_BORAD RecName: Full=DNA-binding protein HBbu
 gi|1280589|gb|AAC73108.1| histone-like protein HBbu [Borrelia andersonii]
 gi|89145722|gb|ABD62050.1| Hbb [Borrelia andersonii]
 gi|89145726|gb|ABD62052.1| Hbb [Borrelia andersonii]
          Length = 108

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   VTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 60  GSRV-GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
             R+  RN QT + VK+    V  F+    LK+R+ 
Sbjct: 69  RGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|94984283|ref|YP_603647.1| histone-like protein DNA-binding protein [Deinococcus geothermalis
           DSM 11300]
 gi|94554564|gb|ABF44478.1| histone-like protein DNA-binding protein [Deinococcus geothermalis
           DSM 11300]
          Length = 116

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 44/86 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           I ++ +V  I++   LSRK ++  V T+ + I  +   G+ + +    T  V +  +R G
Sbjct: 28  IAKTQIVDQIAERTSLSRKQASEAVATILDTIAQALREGKTVGLPGLGTLSVTETAARTG 87

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILK 90
               T++ ++I   + + FK ++ LK
Sbjct: 88  VRPGTSERIQIPAGKKIRFKVATTLK 113


>gi|160886673|ref|ZP_02067676.1| hypothetical protein BACOVA_04685 [Bacteroides ovatus ATCC 8483]
 gi|298383516|ref|ZP_06993077.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
 gi|156107084|gb|EDO08829.1| hypothetical protein BACOVA_04685 [Bacteroides ovatus ATCC 8483]
 gi|298263120|gb|EFI05983.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
          Length = 93

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 42/82 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++V  IS++ G+ +      V +    + +S V G  + +  F +F +K++  +  
Sbjct: 1  MTKAEIVAQISRQSGIEKTVVMTVVESFMENVKESMVAGNEVFLRGFGSFVIKRRAEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  +KI    +  FK +
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPA 82


>gi|332827120|gb|EGJ99905.1| hypothetical protein HMPREF9455_03778 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 96

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 21/100 (21%), Positives = 49/100 (49%), Gaps = 4/100 (4%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T  +L+ +++K  G +++ ++  +    + I  +   G +I I  F  F  K+KG R+ 
Sbjct: 1   MTNQELIAALAKRLGWTQRQTSEVLEATVSIINSNLEDGNSINIQGFGLFETKKKGERIS 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
            N  + Q   + P+  + F+    +K    D+++  + N+
Sbjct: 61  VNPVSKQRFLVPPKISLAFRPGQTIK----DNLKNLEVNE 96


>gi|297538718|ref|YP_003674487.1| histone family protein DNA-binding protein [Methylotenera sp.
          301]
 gi|297258065|gb|ADI29910.1| histone family protein DNA-binding protein [Methylotenera sp.
          301]
          Length = 90

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ SI+   GLS+  + R +      I  +  +G+ + +  F TF+V ++ +R G
Sbjct: 1  MNKSELIDSIASASGLSKAAAGRALDATTAAITAAMKKGDLVTLIGFGTFYVGKREARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI       F+A   LK
Sbjct: 61 RNPRTGATIKIKAANSPKFRAGKSLK 86


>gi|212703905|ref|ZP_03312033.1| hypothetical protein DESPIG_01958 [Desulfovibrio piger ATCC
          29098]
 gi|212672608|gb|EEB33091.1| hypothetical protein DESPIG_01958 [Desulfovibrio piger ATCC
          29098]
          Length = 91

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRK-DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++LV+ I  + GL  K  +   +  +   + ++   GE++  + F +F V ++ +R 
Sbjct: 1  MTKAELVEKIHAKAGLPTKAKAEEALDAVVAALREALASGESVTFTGFGSFKVVERAARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I   +V  F     LK  I
Sbjct: 61 GRNPRTGKEITIPASKVAKFTPGKGLKDAI 90


>gi|91201933|emb|CAJ74993.1| strongly similar to DNA binding protein HU [Candidatus Kuenenia
          stuttgartiensis]
          Length = 103

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 43/89 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV+ ++ E  +S+    + V  + N I     +   +++  F TF VK++ +R G
Sbjct: 1  MNKQELVEYVANECSVSKTCGEKAVNAVLNGIKQGVKKSNEVRLIGFGTFSVKERKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   + I   + V F      KK +
Sbjct: 61 RNPQTGAVINIKASKTVKFSVGQDFKKVV 89


>gi|22126657|ref|NP_670080.1| integration host factor subunit beta [Yersinia pestis KIM 10]
 gi|45441027|ref|NP_992566.1| integration host factor subunit beta [Yersinia pestis biovar
          Microtus str. 91001]
 gi|51595758|ref|YP_069949.1| integration host factor subunit beta [Yersinia pseudotuberculosis
          IP 32953]
 gi|108806681|ref|YP_650597.1| integration host factor subunit beta [Yersinia pestis Antiqua]
 gi|108812745|ref|YP_648512.1| integration host factor subunit beta [Yersinia pestis Nepal516]
 gi|145599574|ref|YP_001163650.1| integration host factor subunit beta [Yersinia pestis Pestoides
          F]
 gi|149366650|ref|ZP_01888684.1| integration host factor beta-subunit [Yersinia pestis CA88-4125]
 gi|153947721|ref|YP_001401544.1| integration host factor subunit beta [Yersinia pseudotuberculosis
          IP 31758]
 gi|162421385|ref|YP_001606430.1| integration host factor subunit beta [Yersinia pestis Angola]
 gi|165924753|ref|ZP_02220585.1| integration host factor, beta subunit [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165938957|ref|ZP_02227510.1| integration host factor, beta subunit [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|166009945|ref|ZP_02230843.1| integration host factor, beta subunit [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166211556|ref|ZP_02237591.1| integration host factor, beta subunit [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|167399912|ref|ZP_02305430.1| integration host factor, beta subunit [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167419646|ref|ZP_02311399.1| integration host factor, beta subunit [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167424246|ref|ZP_02315999.1| integration host factor, beta subunit [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|167470895|ref|ZP_02335599.1| integration host factor, beta subunit [Yersinia pestis FV-1]
 gi|170024892|ref|YP_001721397.1| integration host factor subunit beta [Yersinia pseudotuberculosis
          YPIII]
 gi|186894836|ref|YP_001871948.1| integration host factor subunit beta [Yersinia pseudotuberculosis
          PB1/+]
 gi|218928541|ref|YP_002346416.1| integration host factor subunit beta [Yersinia pestis CO92]
 gi|229841363|ref|ZP_04461522.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843468|ref|ZP_04463614.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Yersinia pestis biovar Orientalis str. India 195]
 gi|229895841|ref|ZP_04511011.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Yersinia pestis Pestoides A]
 gi|229903153|ref|ZP_04518266.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Yersinia pestis Nepal516]
 gi|238757620|ref|ZP_04618804.1| Integration host factor subunit beta [Yersinia aldovae ATCC
          35236]
 gi|270486948|ref|ZP_06204022.1| integration host factor subunit beta [Yersinia pestis KIM D27]
 gi|21362608|sp|Q8ZGB1|IHFB_YERPE RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|81691814|sp|Q66CI5|IHFB_YERPS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|123073279|sp|Q1CGG8|IHFB_YERPN RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|123372652|sp|Q1CA70|IHFB_YERPA RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|166975897|sp|A7FJW6|IHFB_YERP3 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|166975898|sp|A4TN15|IHFB_YERPP RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709822|sp|B2KA26|IHFB_YERPB RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709823|sp|A9R7I5|IHFB_YERPG RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709824|sp|B1JRD6|IHFB_YERPY RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|21959671|gb|AAM86331.1|AE013881_1 integration host factor (IHF), beta subunit [Yersinia pestis KIM
          10]
 gi|45435886|gb|AAS61443.1| integration host factor beta-subunit [Yersinia pestis biovar
          Microtus str. 91001]
 gi|51589040|emb|CAH20658.1| integration host factor beta-subunit [Yersinia pseudotuberculosis
          IP 32953]
 gi|108776393|gb|ABG18912.1| integration host factor beta-subunit [Yersinia pestis Nepal516]
 gi|108778594|gb|ABG12652.1| integration host factor beta-subunit [Yersinia pestis Antiqua]
 gi|115347152|emb|CAL20045.1| integration host factor beta-subunit [Yersinia pestis CO92]
 gi|145211270|gb|ABP40677.1| integration host factor beta-subunit [Yersinia pestis Pestoides
          F]
 gi|149291024|gb|EDM41099.1| integration host factor beta-subunit [Yersinia pestis CA88-4125]
 gi|152959216|gb|ABS46677.1| integration host factor, beta subunit [Yersinia
          pseudotuberculosis IP 31758]
 gi|162354200|gb|ABX88148.1| integration host factor, beta subunit [Yersinia pestis Angola]
 gi|165913104|gb|EDR31728.1| integration host factor, beta subunit [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|165923813|gb|EDR40945.1| integration host factor, beta subunit [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165991341|gb|EDR43642.1| integration host factor, beta subunit [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166207327|gb|EDR51807.1| integration host factor, beta subunit [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|166962387|gb|EDR58408.1| integration host factor, beta subunit [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167050620|gb|EDR62028.1| integration host factor, beta subunit [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167057095|gb|EDR66858.1| integration host factor, beta subunit [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|169751426|gb|ACA68944.1| integration host factor, beta subunit [Yersinia
          pseudotuberculosis YPIII]
 gi|186697862|gb|ACC88491.1| integration host factor, beta subunit [Yersinia
          pseudotuberculosis PB1/+]
 gi|229678923|gb|EEO75026.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Yersinia pestis Nepal516]
 gi|229689815|gb|EEO81876.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Yersinia pestis biovar Orientalis str. India 195]
 gi|229697729|gb|EEO87776.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700764|gb|EEO88793.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Yersinia pestis Pestoides A]
 gi|238704125|gb|EEP96658.1| Integration host factor subunit beta [Yersinia aldovae ATCC
          35236]
 gi|270335452|gb|EFA46229.1| integration host factor subunit beta [Yersinia pestis KIM D27]
 gi|320015748|gb|ADV99319.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 94

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +   GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLAGQQSHVPAKVVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V+++ + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89


>gi|16127816|ref|NP_422380.1| integration host factor subunit beta [Caulobacter crescentus
          CB15]
 gi|221236637|ref|YP_002519074.1| integration host factor subunit beta [Caulobacter crescentus
          NA1000]
 gi|21362615|sp|Q9A2H5|IHFB_CAUCR RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|254803531|sp|B8H6A5|IHFB_CAUCN RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|13425330|gb|AAK25548.1| integration host factor beta subunit [Caulobacter crescentus
          CB15]
 gi|220965810|gb|ACL97166.1| integration host factor beta-subunit [Caulobacter crescentus
          NA1000]
          Length = 96

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L+  ++ E   L++KD  R V  +   +  +   G  +++  F    V+ + +R 
Sbjct: 1  MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V +  + V  FK+   L+ R+  D
Sbjct: 61 GRNPRTGEAVDVRAKHVPFFKSGKELRARLNAD 93


>gi|295836876|ref|ZP_06823809.1| DNA-binding protein HU [Streptomyces sp. SPB74]
 gi|302521508|ref|ZP_07273850.1| integration host factor, alpha subunit [Streptomyces sp. SPB78]
 gi|295826251|gb|EFG64756.1| DNA-binding protein HU [Streptomyces sp. SPB74]
 gi|302430403|gb|EFL02219.1| integration host factor, alpha subunit [Streptomyces sp. SPB78]
          Length = 93

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV +++    ++RKD+   +      + D   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDVVAKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN QT + ++I     V   A S LK+
Sbjct: 61 ARNPQTGEPIQIAAGYSVKVSAGSKLKE 88


>gi|39938728|ref|NP_950494.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
 gi|39721837|dbj|BAD04327.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
          OY-M]
          Length = 94

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQKGS 61
          + + + ++ ++++ G+S+K++ +F+      I  S       E + ++ F TF VK + +
Sbjct: 1  MNKLEFLRKLAEKNGVSQKEADKFLNNFIEVISQSLQEFKEDEKVTLTGFGTFEVKHRSA 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          R G+N +T + + I  ++V  FK S   K
Sbjct: 61 REGKNPRTGKTIDIPAKKVPTFKFSKSFK 89


>gi|268679600|ref|YP_003304031.1| histone family protein DNA-binding protein [Sulfurospirillum
          deleyianum DSM 6946]
 gi|268617631|gb|ACZ11996.1| histone family protein DNA-binding protein [Sulfurospirillum
          deleyianum DSM 6946]
          Length = 92

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 43/84 (51%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++ ++++S++ GLS+KD+ + V      I D+ V G+ +    F TF    + +R  R 
Sbjct: 3  KAEFIQAVSEKAGLSKKDTQKAVDAALEAISDALVAGKEVSFIGFGTFSTATRAARKARV 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
            T++ V +     V FK    LK
Sbjct: 63 PGTDRVVDVAKTTAVKFKVGKKLK 86


>gi|333024856|ref|ZP_08452920.1| putative DNA-binding protein HU (hs1) [Streptomyces sp. Tu6071]
 gi|332744708|gb|EGJ75149.1| putative DNA-binding protein HU (hs1) [Streptomyces sp. Tu6071]
          Length = 112

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
           + RS+LV +++    ++RKD+   +      + D   +G E + I  F TF    + +R 
Sbjct: 20  MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDVVAKGDEKVTIPGFLTFERTHRAART 79

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKK 91
            RN QT + ++I     V   A S LK+
Sbjct: 80  ARNPQTGEPIQIAAGYSVKVSAGSKLKE 107


>gi|319794282|ref|YP_004155922.1| histone family protein DNA-binding protein [Variovorax paradoxus
          EPS]
 gi|315596745|gb|ADU37811.1| histone family protein DNA-binding protein [Variovorax paradoxus
          EPS]
          Length = 116

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +LV+ I+    +S+ ++ R + T+ + I  +  +G+ ++I  F TF    + +R G
Sbjct: 1  MNRIELVEKIATTHTVSKAEAARILETVTSAIVAAVKKGDPVQIVGFGTFKQVARAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N Q    +KI  ++V  F   +  K  +
Sbjct: 61 FNPQAGTAIKIAAQKVPKFVPGAAFKAAV 89


>gi|146311088|ref|YP_001176162.1| integration host factor subunit beta [Enterobacter sp. 638]
 gi|166918547|sp|A4W8T1|IHFB_ENT38 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|145317964|gb|ABP60111.1| integration host factor, beta subunit [Enterobacter sp. 638]
          Length = 95

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + S++  +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V ++ + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVDLEGKYVPHFKPGKELRDR 89


>gi|326445075|ref|ZP_08219809.1| DNA-binding protein HU 1 [Streptomyces clavuligerus ATCC 27064]
          Length = 93

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + R++L+ ++++   ++RKD+   +T L   + +   +G E + I  F TF    + +R 
Sbjct: 1  MNRTELIAALTERAEVTRKDADAVLTALAETVGEIVAKGDEKVTIPGFLTFERIHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN QT   ++I     V   A S LK+
Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKE 88


>gi|294629628|ref|ZP_06708188.1| DNA-binding protein HU [Streptomyces sp. e14]
 gi|302551775|ref|ZP_07304117.1| integration host factor, alpha subunit [Streptomyces
          viridochromogenes DSM 40736]
 gi|292832961|gb|EFF91310.1| DNA-binding protein HU [Streptomyces sp. e14]
 gi|302469393|gb|EFL32486.1| integration host factor, alpha subunit [Streptomyces
          viridochromogenes DSM 40736]
          Length = 93

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV +++    ++RKD+   +    + + D   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAAFADVVGDIVSKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN QT + ++I     V   A S LK+
Sbjct: 61 ARNPQTGEPIQIPAGYSVKVSAGSKLKE 88


>gi|315926169|ref|ZP_07922369.1| DNA-binding protein HU-beta [Pseudoramibacter alactolyticus ATCC
          23263]
 gi|315620613|gb|EFV00594.1| DNA-binding protein HU-beta [Pseudoramibacter alactolyticus ATCC
          23263]
          Length = 96

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+ V +++K  GLS+KD+ + +  L   I ++   GE + + +F TF    +  R G
Sbjct: 6  VKKSEFVSAMAKNAGLSKKDTRKELDALIKIIMETVKEGEKVLLMNFGTFDCYYRQGRPG 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T + + +       F+A    K+ +
Sbjct: 66 SNPRTGEPIDVAACYSPRFRAGRAFKRAL 94


>gi|121594958|ref|YP_986854.1| histone family protein DNA-binding protein [Acidovorax sp. JS42]
 gi|222110394|ref|YP_002552658.1| histone family protein DNA-binding protein [Acidovorax ebreus
          TPSY]
 gi|120607038|gb|ABM42778.1| histone family protein DNA-binding protein [Acidovorax sp. JS42]
 gi|221729838|gb|ACM32658.1| histone family protein DNA-binding protein [Acidovorax ebreus
          TPSY]
          Length = 90

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 44/86 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+    +S+  + R + +    +  +  +G  + +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIANNADISKAAAARALESTIEAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI   +V  F+    LK
Sbjct: 61 RNPRTGATIKIKAAKVPKFRPGKALK 86


>gi|311898514|dbj|BAJ30922.1| putative DNA-binding protein Hu [Kitasatospora setae KM-6054]
          Length = 226

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 7/113 (6%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++++++ G  RK +   V  + + +  + V G+ + ++ F TF   ++ +R  
Sbjct: 1   MNKAQLVEAVAEQLG-GRKAAAEAVDAVLDTMVRAVVAGDRVSVTGFGTFEKVERSARFA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT---SPSGSY 114
           RN QT + VK+    V  F+     K  +      +K  KD  +   +P GS 
Sbjct: 60  RNPQTGERVKVKKTAVPRFRPGQGFKDLVSGS---KKLPKDGPSVKKAPKGSL 109


>gi|307329817|ref|ZP_07608972.1| histone family protein DNA-binding protein [Streptomyces
          violaceusniger Tu 4113]
 gi|306884546|gb|EFN15577.1| histone family protein DNA-binding protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 190

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV++I+ + G  R+ +   V  + + I  + V GE + ++ F +F   ++ +R  
Sbjct: 1  MNKAQLVEAIADKVG-GRQQAAEAVDAVLDAIVRAVVAGERVSVTGFGSFEKVERPARYA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + V++    V  F+A    K
Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85


>gi|257125666|ref|YP_003163780.1| histone family protein DNA-binding protein [Leptotrichia buccalis
          C-1013-b]
 gi|257049605|gb|ACV38789.1| histone family protein DNA-binding protein [Leptotrichia buccalis
          C-1013-b]
          Length = 93

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 38/72 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++ + V + +K  G ++K +   V        +  V+GE I+   + TF VK++ +R G
Sbjct: 1  MSKKEFVDAYAKATGETKKRAEELVNAFLETAEEFLVKGENIQFVGWGTFEVKERAAREG 60

Query: 65 RNLQTNQEVKID 76
          RN  T   ++I+
Sbjct: 61 RNPSTGDPIQIE 72


>gi|255592017|ref|XP_002535650.1| Integration host factor beta-subunit, putative [Ricinus communis]
 gi|223522397|gb|EEF26731.1| Integration host factor beta-subunit, putative [Ricinus communis]
          Length = 93

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L+  ++ E   L++KD  R V  +   + ++   G  +++  F    V+ + +R 
Sbjct: 1  MIKSELIARLANENPHLTQKDVERVVGVILERMINALEAGGRVELRGFGALSVRSRPARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  + V  FK+   L+ R+
Sbjct: 61 GRNPRTGETVDVRAKHVPFFKSGKELRARL 90


>gi|222099394|ref|YP_002533962.1| DNA-binding protein HU [Thermotoga neapolitana DSM 4359]
 gi|221571784|gb|ACM22596.1| DNA-binding protein HU [Thermotoga neapolitana DSM 4359]
          Length = 90

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV  ++K+ G  +KD    +  +   I ++  +GE +++  F +F V++  +R G
Sbjct: 1  MNKKELVDRVAKKAGAKKKDVKVILDAVLETITEALAKGEKVQLVGFGSFEVRKAAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N QT + + I  R+V  F+    LK+++
Sbjct: 61 VNPQTKKPITIPERKVPKFRPGKALKEKV 89


>gi|85057759|ref|YP_456675.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
          AYWB]
 gi|84789864|gb|ABC65596.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
          AYWB]
          Length = 106

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/96 (21%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIK---ISSFATFHVKQKGS 61
          + +   ++ ++++ G+++K++ +F+      I  +    E  K   ++ F TF  K + +
Sbjct: 1  MNKLKFLRKLAEKNGITKKEANKFLNNFIELIYQTFEETEEYKKVTLTGFGTFGAKYRNA 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          R G+N +T + + I  ++V  FK S +LK  +++ +
Sbjct: 61 REGKNPRTGKTIYIPAKKVPTFKFSKLLKIFLLNKI 96


>gi|269127666|ref|YP_003301036.1| histone family protein DNA-binding protein [Thermomonospora
          curvata DSM 43183]
 gi|268312624|gb|ACY98998.1| histone family protein DNA-binding protein [Thermomonospora
          curvata DSM 43183]
          Length = 92

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +IS+  G S+K +   V  +   I ++  +G+ + I+ F +F   ++ +R  
Sbjct: 1  MNKRELVDAISERLG-SKKAAAEAVDAILETIQNAVAKGDKVAITGFGSFEKAERPARTA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN  T + +++    V  F+A S  K
Sbjct: 60 RNPATGKTIEVPATSVPKFRAGSDFK 85


>gi|162447729|ref|YP_001620861.1| DNA binding protein [Acholeplasma laidlawii PG-8A]
 gi|161985836|gb|ABX81485.1| DNA binding protein, histone-like protein [Acholeplasma laidlawii
          PG-8A]
          Length = 90

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 18/86 (20%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  ++ +  +++  + + V +  + + ++  + E + ++ F TF V+ + +R G
Sbjct: 1  MNKTELVALVADKAEVTQAMAEKVVNSFVDVVTETLSKDEKVVVTGFGTFEVRNRVARRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          +N +T +E+ +  ++   FKA  +LK
Sbjct: 61 KNPRTGEEIIVPAQKTPAFKAGKLLK 86


>gi|313672337|ref|YP_004050448.1| histone family protein DNA-binding protein [Calditerrivibrio
          nitroreducens DSM 19672]
 gi|312939093|gb|ADR18285.1| histone family protein DNA-binding protein [Calditerrivibrio
          nitroreducens DSM 19672]
          Length = 92

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ I++E   LS++     V  +FN I  +    E ++I  F +F V++K  + 
Sbjct: 1  MNKSELIEKIAEENPHLSKRQVEFIVNGVFNSIKSALESDEKVEIRGFGSFKVRKKNRKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
           RN +T ++V ++ + V  FK S  +K
Sbjct: 61 ARNPKTGEKVIVEAKSVPYFKPSREIK 87


>gi|167644077|ref|YP_001681740.1| integration host factor subunit beta [Caulobacter sp. K31]
 gi|226709785|sp|B0T273|IHFB_CAUSK RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|167346507|gb|ABZ69242.1| integration host factor, beta subunit [Caulobacter sp. K31]
          Length = 94

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L+  ++ E   L++KD  R V  +   +  +   G  +++  F    V+ + +R 
Sbjct: 1  MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V +  + V  FK+   L+ R+  D
Sbjct: 61 GRNPRTGETVDVRAKHVPFFKSGKELRGRLNAD 93


>gi|15640302|ref|NP_229929.1| DNA-binding protein HU [Vibrio cholerae O1 biovar El Tor str.
          N16961]
 gi|121586341|ref|ZP_01676130.1| DNA-binding protein HU [Vibrio cholerae 2740-80]
 gi|121727076|ref|ZP_01680267.1| DNA-binding protein HU [Vibrio cholerae V52]
 gi|147674530|ref|YP_001218528.1| DNA-binding protein HU [Vibrio cholerae O395]
 gi|153801528|ref|ZP_01956114.1| DNA-binding protein HU [Vibrio cholerae MZO-3]
 gi|153818506|ref|ZP_01971173.1| DNA-binding protein HU [Vibrio cholerae NCTC 8457]
 gi|153826741|ref|ZP_01979408.1| DNA-binding protein HU [Vibrio cholerae MZO-2]
 gi|153830400|ref|ZP_01983067.1| DNA-binding protein HU [Vibrio cholerae 623-39]
 gi|227080487|ref|YP_002809038.1| DNA-binding protein HU [Vibrio cholerae M66-2]
 gi|229506930|ref|ZP_04396438.1| DNA-binding protein HU-alpha [Vibrio cholerae BX 330286]
 gi|229509301|ref|ZP_04398784.1| DNA-binding protein HU-alpha [Vibrio cholerae B33]
 gi|229512729|ref|ZP_04402197.1| DNA-binding protein HU-alpha [Vibrio cholerae TMA 21]
 gi|229516247|ref|ZP_04405695.1| DNA-binding protein HU-alpha [Vibrio cholerae RC9]
 gi|229521010|ref|ZP_04410431.1| DNA-binding protein HU-alpha [Vibrio cholerae TM 11079-80]
 gi|229524780|ref|ZP_04414185.1| DNA-binding protein HU-alpha [Vibrio cholerae bv. albensis VL426]
 gi|229527230|ref|ZP_04416623.1| DNA-binding protein HU-alpha [Vibrio cholerae 12129(1)]
 gi|229606441|ref|YP_002877089.1| DNA-binding protein HU-alpha [Vibrio cholerae MJ-1236]
 gi|254225659|ref|ZP_04919266.1| DNA-binding protein HU [Vibrio cholerae V51]
 gi|254286255|ref|ZP_04961214.1| DNA-binding protein HU [Vibrio cholerae AM-19226]
 gi|254851407|ref|ZP_05240757.1| DNA-binding protein HU [Vibrio cholerae MO10]
 gi|255744076|ref|ZP_05418030.1| DNA-binding protein HU-alpha [Vibrio cholera CIRS 101]
 gi|262161965|ref|ZP_06030982.1| DNA-binding protein HU-alpha [Vibrio cholerae INDRE 91/1]
 gi|262168021|ref|ZP_06035720.1| DNA-binding protein HU-alpha [Vibrio cholerae RC27]
 gi|262192520|ref|ZP_06050670.1| DNA-binding protein HU-alpha [Vibrio cholerae CT 5369-93]
 gi|297581737|ref|ZP_06943659.1| DNA-binding protein HU-alpha [Vibrio cholerae RC385]
 gi|298500908|ref|ZP_07010710.1| DNA-binding protein HU [Vibrio cholerae MAK 757]
 gi|14194652|sp|Q9KV83|DBHA_VIBCH RecName: Full=DNA-binding protein HU-alpha
 gi|9654683|gb|AAF93448.1| DNA-binding protein HU [Vibrio cholerae O1 biovar El Tor str.
          N16961]
 gi|121549461|gb|EAX59489.1| DNA-binding protein HU [Vibrio cholerae 2740-80]
 gi|121630587|gb|EAX62977.1| DNA-binding protein HU [Vibrio cholerae V52]
 gi|124122933|gb|EAY41676.1| DNA-binding protein HU [Vibrio cholerae MZO-3]
 gi|125621779|gb|EAZ50106.1| DNA-binding protein HU [Vibrio cholerae V51]
 gi|126510982|gb|EAZ73576.1| DNA-binding protein HU [Vibrio cholerae NCTC 8457]
 gi|146316413|gb|ABQ20952.1| DNA-binding protein HU [Vibrio cholerae O395]
 gi|148874134|gb|EDL72269.1| DNA-binding protein HU [Vibrio cholerae 623-39]
 gi|149739456|gb|EDM53694.1| DNA-binding protein HU [Vibrio cholerae MZO-2]
 gi|150423670|gb|EDN15612.1| DNA-binding protein HU [Vibrio cholerae AM-19226]
 gi|227008375|gb|ACP04587.1| DNA-binding protein HU [Vibrio cholerae M66-2]
 gi|227012115|gb|ACP08325.1| DNA-binding protein HU [Vibrio cholerae O395]
 gi|229335238|gb|EEO00722.1| DNA-binding protein HU-alpha [Vibrio cholerae 12129(1)]
 gi|229338361|gb|EEO03378.1| DNA-binding protein HU-alpha [Vibrio cholerae bv. albensis VL426]
 gi|229341895|gb|EEO06896.1| DNA-binding protein HU-alpha [Vibrio cholerae TM 11079-80]
 gi|229346673|gb|EEO11643.1| DNA-binding protein HU-alpha [Vibrio cholerae RC9]
 gi|229350239|gb|EEO15191.1| DNA-binding protein HU-alpha [Vibrio cholerae TMA 21]
 gi|229353616|gb|EEO18553.1| DNA-binding protein HU-alpha [Vibrio cholerae B33]
 gi|229356035|gb|EEO20954.1| DNA-binding protein HU-alpha [Vibrio cholerae BX 330286]
 gi|229369096|gb|ACQ59519.1| DNA-binding protein HU-alpha [Vibrio cholerae MJ-1236]
 gi|254847112|gb|EET25526.1| DNA-binding protein HU [Vibrio cholerae MO10]
 gi|255738341|gb|EET93732.1| DNA-binding protein HU-alpha [Vibrio cholera CIRS 101]
 gi|262023554|gb|EEY42256.1| DNA-binding protein HU-alpha [Vibrio cholerae RC27]
 gi|262028343|gb|EEY46999.1| DNA-binding protein HU-alpha [Vibrio cholerae INDRE 91/1]
 gi|262031565|gb|EEY50153.1| DNA-binding protein HU-alpha [Vibrio cholerae CT 5369-93]
 gi|297534144|gb|EFH72983.1| DNA-binding protein HU-alpha [Vibrio cholerae RC385]
 gi|297540412|gb|EFH76471.1| DNA-binding protein HU [Vibrio cholerae MAK 757]
 gi|327483145|gb|AEA77552.1| DNA-binding protein HU-alpha [Vibrio cholerae LMA3894-4]
          Length = 90

 Score = 41.6 bits (96), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  L++  +   +      +  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLTKVQAKAALEATLGAVEGALKDGDQVQLIGFGTFKVNHRSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E+KI    V  F A   LK  I
Sbjct: 61 RNPKTGEEIKIAAANVPAFVAGKALKDAI 89


>gi|224024934|ref|ZP_03643300.1| hypothetical protein BACCOPRO_01665 [Bacteroides coprophilus DSM
          18228]
 gi|224018170|gb|EEF76168.1| hypothetical protein BACCOPRO_01665 [Bacteroides coprophilus DSM
          18228]
          Length = 95

 Score = 41.6 bits (96), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 39/83 (46%)

Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV 73
          +S+  G + KD+   V +L + +         +    F TF VK+K  R+  N  T Q +
Sbjct: 10 LSRRLGYTNKDAAVLVASLVDIMAQELQESNVLTFQEFGTFEVKKKMERIVVNPVTRQRL 69

Query: 74 KIDPRRVVVFKASSILKKRIMDD 96
           + P+  + FK    LK ++ ++
Sbjct: 70 LVPPKLSLTFKPCPALKGKVKNE 92


>gi|15800773|ref|NP_286787.1| integration host factor subunit beta [Escherichia coli O157:H7
          EDL933]
 gi|15830249|ref|NP_309022.1| integration host factor subunit beta [Escherichia coli O157:H7
          str. Sakai]
 gi|16128879|ref|NP_415432.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli str. K-12 substr. MG1655]
 gi|24112321|ref|NP_706831.1| integration host factor subunit beta [Shigella flexneri 2a str.
          301]
 gi|26246937|ref|NP_752977.1| integration host factor subunit beta [Escherichia coli CFT073]
 gi|30062447|ref|NP_836618.1| integration host factor subunit beta [Shigella flexneri 2a str.
          2457T]
 gi|74311469|ref|YP_309888.1| integration host factor subunit beta [Shigella sonnei Ss046]
 gi|82544651|ref|YP_408598.1| integration host factor subunit beta [Shigella boydii Sb227]
 gi|82777565|ref|YP_403914.1| integration host factor subunit beta [Shigella dysenteriae Sd197]
 gi|89107762|ref|AP_001542.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli str. K-12 substr. W3110]
 gi|91210013|ref|YP_539999.1| integration host factor subunit beta [Escherichia coli UTI89]
 gi|110641109|ref|YP_668839.1| integration host factor subunit beta [Escherichia coli 536]
 gi|110804920|ref|YP_688440.1| integration host factor subunit beta [Shigella flexneri 5 str.
          8401]
 gi|157157201|ref|YP_001462130.1| integration host factor subunit beta [Escherichia coli E24377A]
 gi|157160434|ref|YP_001457752.1| integration host factor subunit beta [Escherichia coli HS]
 gi|168751175|ref|ZP_02776197.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4113]
 gi|168757004|ref|ZP_02782011.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4401]
 gi|168762953|ref|ZP_02787960.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4501]
 gi|168769907|ref|ZP_02794914.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4486]
 gi|168776237|ref|ZP_02801244.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4196]
 gi|168784109|ref|ZP_02809116.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4076]
 gi|168787341|ref|ZP_02812348.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC869]
 gi|168801405|ref|ZP_02826412.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC508]
 gi|170020686|ref|YP_001725640.1| integration host factor subunit beta [Escherichia coli ATCC 8739]
 gi|170080570|ref|YP_001729890.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli str. K-12 substr. DH10B]
 gi|170683232|ref|YP_001744258.1| integration host factor subunit beta [Escherichia coli SMS-3-5]
 gi|170769200|ref|ZP_02903653.1| integration host factor, beta subunit [Escherichia albertii
          TW07627]
 gi|187733349|ref|YP_001880893.1| integration host factor subunit beta [Shigella boydii CDC
          3083-94]
 gi|188493972|ref|ZP_03001242.1| integration host factor, beta subunit [Escherichia coli 53638]
 gi|191166992|ref|ZP_03028815.1| integration host factor, beta subunit [Escherichia coli B7A]
 gi|191172063|ref|ZP_03033607.1| integration host factor, beta subunit [Escherichia coli F11]
 gi|193064687|ref|ZP_03045766.1| integration host factor, beta subunit [Escherichia coli E22]
 gi|193070745|ref|ZP_03051680.1| integration host factor, beta subunit [Escherichia coli E110019]
 gi|194428394|ref|ZP_03060935.1| integration host factor, beta subunit [Escherichia coli B171]
 gi|194431402|ref|ZP_03063694.1| integration host factor, beta subunit [Shigella dysenteriae 1012]
 gi|194438689|ref|ZP_03070776.1| integration host factor, beta subunit [Escherichia coli 101-1]
 gi|195940069|ref|ZP_03085451.1| integration host factor subunit beta [Escherichia coli O157:H7
          str. EC4024]
 gi|208809443|ref|ZP_03251780.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4206]
 gi|208814934|ref|ZP_03256113.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4045]
 gi|208822709|ref|ZP_03263028.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4042]
 gi|209396562|ref|YP_002269584.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4115]
 gi|209918162|ref|YP_002292246.1| integration host factor subunit beta [Escherichia coli SE11]
 gi|217325996|ref|ZP_03442080.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. TW14588]
 gi|218553499|ref|YP_002386412.1| integration host factor subunit beta [Escherichia coli IAI1]
 gi|218557817|ref|YP_002390730.1| integration host factor subunit beta [Escherichia coli S88]
 gi|218688752|ref|YP_002396964.1| integration host factor subunit beta [Escherichia coli ED1a]
 gi|218694385|ref|YP_002402052.1| integration host factor subunit beta [Escherichia coli 55989]
 gi|218700569|ref|YP_002408198.1| integration host factor subunit beta [Escherichia coli IAI39]
 gi|218704339|ref|YP_002411858.1| integration host factor subunit beta [Escherichia coli UMN026]
 gi|227884123|ref|ZP_04001928.1| integration host factor subunit beta [Escherichia coli 83972]
 gi|237707100|ref|ZP_04537581.1| integration host factor subunit beta [Escherichia sp. 3_2_53FAA]
 gi|238900170|ref|YP_002925966.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli BW2952]
 gi|253774059|ref|YP_003036890.1| integration host factor subunit beta [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|254161026|ref|YP_003044134.1| integration host factor subunit beta [Escherichia coli B str.
          REL606]
 gi|254792111|ref|YP_003076948.1| integration host factor subunit beta [Escherichia coli O157:H7
          str. TW14359]
 gi|256020960|ref|ZP_05434825.1| integration host factor subunit beta [Shigella sp. D9]
 gi|256023387|ref|ZP_05437252.1| integration host factor subunit beta [Escherichia sp. 4_1_40B]
 gi|260843162|ref|YP_003220940.1| integration host factor, beta subunit [Escherichia coli O103:H2
          str. 12009]
 gi|260854203|ref|YP_003228094.1| integration host factor, beta subunit [Escherichia coli O26:H11
          str. 11368]
 gi|260867084|ref|YP_003233486.1| integration host factor, beta subunit [Escherichia coli O111:H-
          str. 11128]
 gi|261227415|ref|ZP_05941696.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256162|ref|ZP_05948695.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. FRIK966]
 gi|291281913|ref|YP_003498731.1| Integration host factor subunit beta [Escherichia coli O55:H7
          str. CB9615]
 gi|293404217|ref|ZP_06648211.1| ihfB [Escherichia coli FVEC1412]
 gi|293409289|ref|ZP_06652865.1| integration host factor [Escherichia coli B354]
 gi|293414192|ref|ZP_06656841.1| integration host factor [Escherichia coli B185]
 gi|293433209|ref|ZP_06661637.1| integration host factor [Escherichia coli B088]
 gi|297520621|ref|ZP_06939007.1| integration host factor subunit beta [Escherichia coli OP50]
 gi|298379997|ref|ZP_06989602.1| ihfB [Escherichia coli FVEC1302]
 gi|300816984|ref|ZP_07097203.1| integration host factor, beta subunit [Escherichia coli MS 107-1]
 gi|300823652|ref|ZP_07103779.1| integration host factor, beta subunit [Escherichia coli MS 119-7]
 gi|300901658|ref|ZP_07119718.1| integration host factor, beta subunit [Escherichia coli MS 198-1]
 gi|300902929|ref|ZP_07120874.1| integration host factor, beta subunit [Escherichia coli MS 84-1]
 gi|300921051|ref|ZP_07137437.1| integration host factor, beta subunit [Escherichia coli MS 115-1]
 gi|300925410|ref|ZP_07141295.1| integration host factor, beta subunit [Escherichia coli MS 182-1]
 gi|300929607|ref|ZP_07145069.1| integration host factor, beta subunit [Escherichia coli MS 187-1]
 gi|300937744|ref|ZP_07152545.1| integration host factor, beta subunit [Escherichia coli MS 21-1]
 gi|300949726|ref|ZP_07163704.1| integration host factor, beta subunit [Escherichia coli MS 116-1]
 gi|300955440|ref|ZP_07167814.1| integration host factor, beta subunit [Escherichia coli MS 175-1]
 gi|300978463|ref|ZP_07174278.1| integration host factor, beta subunit [Escherichia coli MS 45-1]
 gi|300983138|ref|ZP_07176452.1| integration host factor, beta subunit [Escherichia coli MS 200-1]
 gi|301022406|ref|ZP_07186289.1| integration host factor, beta subunit [Escherichia coli MS 196-1]
 gi|301023015|ref|ZP_07186826.1| integration host factor, beta subunit [Escherichia coli MS 69-1]
 gi|301047829|ref|ZP_07194880.1| integration host factor, beta subunit [Escherichia coli MS 185-1]
 gi|301302480|ref|ZP_07208611.1| integration host factor, beta subunit [Escherichia coli MS 124-1]
 gi|301326623|ref|ZP_07219956.1| integration host factor, beta subunit [Escherichia coli MS 78-1]
 gi|301643432|ref|ZP_07243480.1| integration host factor, beta subunit [Escherichia coli MS 146-1]
 gi|306812635|ref|ZP_07446828.1| integration host factor subunit beta [Escherichia coli NC101]
 gi|307137541|ref|ZP_07496897.1| integration host factor subunit beta [Escherichia coli H736]
 gi|307311701|ref|ZP_07591341.1| integration host factor, beta subunit [Escherichia coli W]
 gi|309787783|ref|ZP_07682393.1| integration host factor, beta subunit [Shigella dysenteriae 1617]
 gi|309795104|ref|ZP_07689524.1| integration host factor, beta subunit [Escherichia coli MS 145-7]
 gi|312969022|ref|ZP_07783229.1| integration host factor, beta subunit [Escherichia coli 2362-75]
 gi|312971040|ref|ZP_07785219.1| integration host factor, beta subunit [Escherichia coli 1827-70]
 gi|331641438|ref|ZP_08342573.1| integration host factor, beta subunit [Escherichia coli H736]
 gi|331646177|ref|ZP_08347280.1| integration host factor, beta subunit [Escherichia coli M605]
 gi|331651932|ref|ZP_08352951.1| integration host factor, beta subunit [Escherichia coli M718]
 gi|331656983|ref|ZP_08357945.1| integration host factor, beta subunit [Escherichia coli TA206]
 gi|331662325|ref|ZP_08363248.1| integration host factor, beta subunit [Escherichia coli TA143]
 gi|331667289|ref|ZP_08368154.1| integration host factor, beta subunit [Escherichia coli TA271]
 gi|331676700|ref|ZP_08377396.1| integration host factor, beta subunit [Escherichia coli H591]
 gi|331682419|ref|ZP_08383038.1| integration host factor, beta subunit [Escherichia coli H299]
 gi|332282183|ref|ZP_08394596.1| integration host factor (IHF) DNA-binding protein beta subunit
          [Shigella sp. D9]
 gi|67466112|sp|P0A6Y1|IHFB_ECOLI RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|67466113|sp|P0A6Y2|IHFB_ECOL6 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|67466114|sp|P0A6Y3|IHFB_ECO57 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|67466115|sp|P0A6Y4|IHFB_SHIFL RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|122990837|sp|Q1RDU6|IHFB_ECOUT RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|123342125|sp|Q0SX03|IHFB_SHIF8 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|123344183|sp|Q0TJE1|IHFB_ECOL5 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|123741971|sp|Q31YT8|IHFB_SHIBS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|123742113|sp|Q32E32|IHFB_SHIDS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|123773538|sp|Q3Z3K9|IHFB_SHISS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|166918545|sp|A7ZK01|IHFB_ECO24 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|166918546|sp|A7ZYL5|IHFB_ECOHS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|189045036|sp|B1IW19|IHFB_ECOLC RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709786|sp|B7MHM1|IHFB_ECO45 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709787|sp|B5YT46|IHFB_ECO5E RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709788|sp|B7NM62|IHFB_ECO7I RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709789|sp|B7M841|IHFB_ECO8A RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709790|sp|B1X852|IHFB_ECODH RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709791|sp|B7NAR1|IHFB_ECOLU RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709792|sp|B6I8Y4|IHFB_ECOSE RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709793|sp|B1LJV1|IHFB_ECOSM RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709814|sp|B2TUG9|IHFB_SHIB3 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|254803533|sp|B7LDA4|IHFB_ECO55 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|254803534|sp|B7MS27|IHFB_ECO81 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|259492034|sp|C4ZQ38|IHFB_ECOBW RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|1942276|pdb|1IHF|B Chain B, Integration Host FactorDNA COMPLEX
 gi|34811470|pdb|1OWG|B Chain B, Crystal Structure Of Wt Ihf Complexed With An Altered H'
          Site (T44a)
 gi|119389942|pdb|2HT0|B Chain B, Ihf Bound To Doubly Nicked Dna
 gi|12514078|gb|AAG55397.1|AE005280_8 integration host factor (IHF), beta subunit; site-specific
          recombination [Escherichia coli O157:H7 str. EDL933]
 gi|26107337|gb|AAN79520.1|AE016758_124 Integration host factor beta-subunit [Escherichia coli CFT073]
 gi|414749|emb|CAA28557.1| IHF (AA 1-93) [Escherichia coli K-12]
 gi|1651440|dbj|BAA35656.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli str. K12 substr. W3110]
 gi|1787141|gb|AAC73998.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli str. K-12 substr. MG1655]
 gi|13360454|dbj|BAB34418.1| integration host factor (IHF) beta subunit [Escherichia coli
          O157:H7 str. Sakai]
 gi|24051181|gb|AAN42538.1| integration host factor (IHF), beta subunit [Shigella flexneri 2a
          str. 301]
 gi|30040693|gb|AAP16424.1| integration host factor (IHF), beta subunit [Shigella flexneri 2a
          str. 2457T]
 gi|68304094|gb|AAY89705.1| IhfB [Escherichia coli LW1655F+]
 gi|73854946|gb|AAZ87653.1| integration host factor (IHF), beta subunit [Shigella sonnei
          Ss046]
 gi|81241713|gb|ABB62423.1| integration host factor, beta subunit [Shigella dysenteriae
          Sd197]
 gi|81246062|gb|ABB66770.1| integration host factor (IHF), beta subunit [Shigella boydii
          Sb227]
 gi|91071587|gb|ABE06468.1| beta subunit of IHF transcriptional dual regulator [Escherichia
          coli UTI89]
 gi|110342701|gb|ABG68938.1| integration host factor beta-subunit [Escherichia coli 536]
 gi|110614468|gb|ABF03135.1| integration host factor beta subunit [Shigella flexneri 5 str.
          8401]
 gi|157066114|gb|ABV05369.1| integration host factor, beta subunit [Escherichia coli HS]
 gi|157079231|gb|ABV18939.1| integration host factor, beta subunit [Escherichia coli E24377A]
 gi|169755614|gb|ACA78313.1| integration host factor, beta subunit [Escherichia coli ATCC
          8739]
 gi|169888405|gb|ACB02112.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli str. K-12 substr. DH10B]
 gi|170121852|gb|EDS90783.1| integration host factor, beta subunit [Escherichia albertii
          TW07627]
 gi|170520950|gb|ACB19128.1| integration host factor, beta subunit [Escherichia coli SMS-3-5]
 gi|187430341|gb|ACD09615.1| integration host factor, beta subunit [Shigella boydii CDC
          3083-94]
 gi|187768389|gb|EDU32233.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4196]
 gi|188014737|gb|EDU52859.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4113]
 gi|188489171|gb|EDU64274.1| integration host factor, beta subunit [Escherichia coli 53638]
 gi|188998657|gb|EDU67643.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4076]
 gi|189355928|gb|EDU74347.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4401]
 gi|189361153|gb|EDU79572.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4486]
 gi|189366830|gb|EDU85246.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4501]
 gi|189372671|gb|EDU91087.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC869]
 gi|189376433|gb|EDU94849.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC508]
 gi|190902986|gb|EDV62712.1| integration host factor, beta subunit [Escherichia coli B7A]
 gi|190907590|gb|EDV67185.1| integration host factor, beta subunit [Escherichia coli F11]
 gi|192927744|gb|EDV82359.1| integration host factor, beta subunit [Escherichia coli E22]
 gi|192955938|gb|EDV86406.1| integration host factor, beta subunit [Escherichia coli E110019]
 gi|194413609|gb|EDX29890.1| integration host factor, beta subunit [Escherichia coli B171]
 gi|194420227|gb|EDX36304.1| integration host factor, beta subunit [Shigella dysenteriae 1012]
 gi|194422321|gb|EDX38321.1| integration host factor, beta subunit [Escherichia coli 101-1]
 gi|208729244|gb|EDZ78845.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4206]
 gi|208731582|gb|EDZ80270.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4045]
 gi|208738194|gb|EDZ85877.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4042]
 gi|209157962|gb|ACI35395.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4115]
 gi|209774858|gb|ACI85741.1| integration host factor (IHF) beta subunit [Escherichia coli]
 gi|209774860|gb|ACI85742.1| integration host factor (IHF) beta subunit [Escherichia coli]
 gi|209774862|gb|ACI85743.1| integration host factor (IHF) beta subunit [Escherichia coli]
 gi|209774864|gb|ACI85744.1| integration host factor (IHF) beta subunit [Escherichia coli]
 gi|209774866|gb|ACI85745.1| integration host factor (IHF) beta subunit [Escherichia coli]
 gi|209911421|dbj|BAG76495.1| integration host factor beta subunit [Escherichia coli SE11]
 gi|217322217|gb|EEC30641.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. TW14588]
 gi|218351117|emb|CAU96821.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli 55989]
 gi|218360267|emb|CAQ97817.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli IAI1]
 gi|218364586|emb|CAR02272.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli S88]
 gi|218370555|emb|CAR18362.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli IAI39]
 gi|218426316|emb|CAR07141.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli ED1a]
 gi|218431436|emb|CAR12314.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli UMN026]
 gi|222032643|emb|CAP75382.1| Integration host factor subunit beta [Escherichia coli LF82]
 gi|226898310|gb|EEH84569.1| integration host factor subunit beta [Escherichia sp. 3_2_53FAA]
 gi|227838875|gb|EEJ49341.1| integration host factor subunit beta [Escherichia coli 83972]
 gi|238861522|gb|ACR63520.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli BW2952]
 gi|242376727|emb|CAQ31440.1| integration host factor (IHF), beta subunit, subunit of IHF
          transcriptional dual regulator [Escherichia coli
          BL21(DE3)]
 gi|253325103|gb|ACT29705.1| integration host factor, beta subunit [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253972927|gb|ACT38598.1| integration host factor subunit beta [Escherichia coli B str.
          REL606]
 gi|253977141|gb|ACT42811.1| integration host factor subunit beta [Escherichia coli BL21(DE3)]
 gi|254591511|gb|ACT70872.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli O157:H7 str. TW14359]
 gi|257752852|dbj|BAI24354.1| integration host factor, beta subunit [Escherichia coli O26:H11
          str. 11368]
 gi|257758309|dbj|BAI29806.1| integration host factor, beta subunit [Escherichia coli O103:H2
          str. 12009]
 gi|257763440|dbj|BAI34935.1| integration host factor, beta subunit [Escherichia coli O111:H-
          str. 11128]
 gi|260449942|gb|ACX40364.1| integration host factor, beta subunit [Escherichia coli DH1]
 gi|281178043|dbj|BAI54373.1| integration host factor beta subunit [Escherichia coli SE15]
 gi|281600272|gb|ADA73256.1| Integration host factor subunit beta [Shigella flexneri 2002017]
 gi|284920763|emb|CBG33826.1| integration host factor beta-subunit (IHF-beta) [Escherichia coli
          042]
 gi|290761786|gb|ADD55747.1| Integration host factor subunit beta [Escherichia coli O55:H7
          str. CB9615]
 gi|291324028|gb|EFE63450.1| integration host factor [Escherichia coli B088]
 gi|291428803|gb|EFF01828.1| ihfB [Escherichia coli FVEC1412]
 gi|291434250|gb|EFF07223.1| integration host factor [Escherichia coli B185]
 gi|291469757|gb|EFF12241.1| integration host factor [Escherichia coli B354]
 gi|294490499|gb|ADE89255.1| integration host factor, beta subunit [Escherichia coli IHE3034]
 gi|298279695|gb|EFI21203.1| ihfB [Escherichia coli FVEC1302]
 gi|299881247|gb|EFI89458.1| integration host factor, beta subunit [Escherichia coli MS 196-1]
 gi|300300288|gb|EFJ56673.1| integration host factor, beta subunit [Escherichia coli MS 185-1]
 gi|300306972|gb|EFJ61492.1| integration host factor, beta subunit [Escherichia coli MS 200-1]
 gi|300317663|gb|EFJ67447.1| integration host factor, beta subunit [Escherichia coli MS 175-1]
 gi|300354951|gb|EFJ70821.1| integration host factor, beta subunit [Escherichia coli MS 198-1]
 gi|300397276|gb|EFJ80814.1| integration host factor, beta subunit [Escherichia coli MS 69-1]
 gi|300405071|gb|EFJ88609.1| integration host factor, beta subunit [Escherichia coli MS 84-1]
 gi|300409640|gb|EFJ93178.1| integration host factor, beta subunit [Escherichia coli MS 45-1]
 gi|300411989|gb|EFJ95299.1| integration host factor, beta subunit [Escherichia coli MS 115-1]
 gi|300418480|gb|EFK01791.1| integration host factor, beta subunit [Escherichia coli MS 182-1]
 gi|300450874|gb|EFK14494.1| integration host factor, beta subunit [Escherichia coli MS 116-1]
 gi|300457251|gb|EFK20744.1| integration host factor, beta subunit [Escherichia coli MS 21-1]
 gi|300462444|gb|EFK25937.1| integration host factor, beta subunit [Escherichia coli MS 187-1]
 gi|300523852|gb|EFK44921.1| integration host factor, beta subunit [Escherichia coli MS 119-7]
 gi|300530336|gb|EFK51398.1| integration host factor, beta subunit [Escherichia coli MS 107-1]
 gi|300842319|gb|EFK70079.1| integration host factor, beta subunit [Escherichia coli MS 124-1]
 gi|300846706|gb|EFK74466.1| integration host factor, beta subunit [Escherichia coli MS 78-1]
 gi|301078146|gb|EFK92952.1| integration host factor, beta subunit [Escherichia coli MS 146-1]
 gi|305853398|gb|EFM53837.1| integration host factor subunit beta [Escherichia coli NC101]
 gi|306908256|gb|EFN38755.1| integration host factor, beta subunit [Escherichia coli W]
 gi|307552751|gb|ADN45526.1| integration host factor, beta subunit [Escherichia coli ABU
          83972]
 gi|307627661|gb|ADN71965.1| integration host factor subunit beta [Escherichia coli UM146]
 gi|308121408|gb|EFO58670.1| integration host factor, beta subunit [Escherichia coli MS 145-7]
 gi|308924182|gb|EFP69679.1| integration host factor, beta subunit [Shigella dysenteriae 1617]
 gi|309701188|emb|CBJ00488.1| integration host factor beta-subunit (IHF-beta) [Escherichia coli
          ETEC H10407]
 gi|310336801|gb|EFQ01968.1| integration host factor, beta subunit [Escherichia coli 1827-70]
 gi|312286424|gb|EFR14337.1| integration host factor, beta subunit [Escherichia coli 2362-75]
 gi|312945432|gb|ADR26259.1| integration host factor subunit beta [Escherichia coli O83:H1
          str. NRG 857C]
 gi|313650849|gb|EFS15250.1| integration host factor, beta subunit [Shigella flexneri 2a str.
          2457T]
 gi|315060197|gb|ADT74524.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli W]
 gi|315135560|dbj|BAJ42719.1| integration host factor subunit beta [Escherichia coli DH1]
 gi|315257953|gb|EFU37921.1| integration host factor, beta subunit [Escherichia coli MS 85-1]
 gi|315287525|gb|EFU46936.1| integration host factor, beta subunit [Escherichia coli MS 110-3]
 gi|315291230|gb|EFU50590.1| integration host factor, beta subunit [Escherichia coli MS 153-1]
 gi|315296192|gb|EFU55500.1| integration host factor, beta subunit [Escherichia coli MS 16-3]
 gi|315619106|gb|EFU99686.1| integration host factor, beta subunit [Escherichia coli 3431]
 gi|320173253|gb|EFW48462.1| Integration host factor beta subunit [Shigella dysenteriae CDC
          74-1112]
 gi|320182020|gb|EFW56925.1| Integration host factor beta subunit [Shigella boydii ATCC 9905]
 gi|320184256|gb|EFW59069.1| Integration host factor beta subunit [Shigella flexneri CDC
          796-83]
 gi|320192602|gb|EFW67243.1| Integration host factor beta subunit [Escherichia coli O157:H7
          str. EC1212]
 gi|320196594|gb|EFW71217.1| Integration host factor beta subunit [Escherichia coli WV_060327]
 gi|320202308|gb|EFW76879.1| Integration host factor beta subunit [Escherichia coli EC4100B]
 gi|320637780|gb|EFX07572.1| integration host factor subunit beta [Escherichia coli O157:H7
          str. G5101]
 gi|320642905|gb|EFX12106.1| integration host factor subunit beta [Escherichia coli O157:H-
          str. 493-89]
 gi|320648362|gb|EFX17017.1| integration host factor subunit beta [Escherichia coli O157:H-
          str. H 2687]
 gi|320653678|gb|EFX21752.1| integration host factor subunit beta [Escherichia coli O55:H7
          str. 3256-97 TW 07815]
 gi|320659823|gb|EFX27379.1| integration host factor subunit beta [Escherichia coli O55:H7
          str. USDA 5905]
 gi|320664292|gb|EFX31443.1| integration host factor subunit beta [Escherichia coli O157:H7
          str. LSU-61]
 gi|323157201|gb|EFZ43324.1| integration host factor, beta subunit [Escherichia coli EPECa14]
 gi|323159538|gb|EFZ45518.1| integration host factor, beta subunit [Escherichia coli E128010]
 gi|323165379|gb|EFZ51166.1| integration host factor, beta subunit [Shigella sonnei 53G]
 gi|323174987|gb|EFZ60602.1| integration host factor, beta subunit [Escherichia coli LT-68]
 gi|323175465|gb|EFZ61060.1| integration host factor, beta subunit [Escherichia coli 1180]
 gi|323185382|gb|EFZ70746.1| integration host factor, beta subunit [Escherichia coli 1357]
 gi|323190732|gb|EFZ76001.1| integration host factor, beta subunit [Escherichia coli RN587/1]
 gi|323379243|gb|ADX51511.1| integration host factor, beta subunit [Escherichia coli KO11]
 gi|323938018|gb|EGB34280.1| integration host protein [Escherichia coli E1520]
 gi|323942828|gb|EGB38993.1| integration host protein [Escherichia coli E482]
 gi|323947299|gb|EGB43307.1| integration host protein [Escherichia coli H120]
 gi|323953381|gb|EGB49247.1| integration host protein [Escherichia coli H252]
 gi|323958217|gb|EGB53926.1| integration host protein [Escherichia coli H263]
 gi|323962904|gb|EGB58478.1| integration host protein [Escherichia coli H489]
 gi|323967159|gb|EGB62583.1| integration host protein [Escherichia coli M863]
 gi|323973213|gb|EGB68405.1| integration host protein [Escherichia coli TA007]
 gi|323976701|gb|EGB71789.1| integration host protein [Escherichia coli TW10509]
 gi|324009836|gb|EGB79055.1| integration host factor, beta subunit [Escherichia coli MS 57-2]
 gi|324012972|gb|EGB82191.1| integration host factor, beta subunit [Escherichia coli MS 60-1]
 gi|324019079|gb|EGB88298.1| integration host factor, beta subunit [Escherichia coli MS 117-3]
 gi|324117223|gb|EGC11131.1| integration host protein [Escherichia coli E1167]
 gi|326338193|gb|EGD62022.1| Integration host factor beta subunit [Escherichia coli O157:H7
          str. 1125]
 gi|326346170|gb|EGD69908.1| Integration host factor beta subunit [Escherichia coli O157:H7
          str. 1044]
 gi|327253702|gb|EGE65331.1| integration host factor, beta subunit [Escherichia coli STEC_7v]
 gi|330910692|gb|EGH39202.1| integration host factor beta subunit [Escherichia coli AA86]
 gi|331038236|gb|EGI10456.1| integration host factor, beta subunit [Escherichia coli H736]
 gi|331044929|gb|EGI17056.1| integration host factor, beta subunit [Escherichia coli M605]
 gi|331050210|gb|EGI22268.1| integration host factor, beta subunit [Escherichia coli M718]
 gi|331055231|gb|EGI27240.1| integration host factor, beta subunit [Escherichia coli TA206]
 gi|331060747|gb|EGI32711.1| integration host factor, beta subunit [Escherichia coli TA143]
 gi|331065645|gb|EGI37538.1| integration host factor, beta subunit [Escherichia coli TA271]
 gi|331075389|gb|EGI46687.1| integration host factor, beta subunit [Escherichia coli H591]
 gi|331080050|gb|EGI51229.1| integration host factor, beta subunit [Escherichia coli H299]
 gi|332093267|gb|EGI98327.1| integration host factor, beta subunit [Shigella boydii 5216-82]
 gi|332104535|gb|EGJ07881.1| integration host factor (IHF) DNA-binding protein beta subunit
          [Shigella sp. D9]
 gi|332760079|gb|EGJ90377.1| integration host factor, beta subunit [Shigella flexneri 2747-71]
 gi|332762681|gb|EGJ92944.1| integration host factor, beta subunit [Shigella flexneri K-671]
 gi|333006353|gb|EGK25861.1| integration host factor, beta subunit [Shigella flexneri VA-6]
 gi|333006934|gb|EGK26429.1| integration host factor, beta subunit [Shigella flexneri K-218]
 gi|333008890|gb|EGK28350.1| integration host factor, beta subunit [Shigella flexneri K-272]
 gi|333020034|gb|EGK39305.1| integration host factor, beta subunit [Shigella flexneri K-304]
 gi|333020200|gb|EGK39470.1| integration host factor, beta subunit [Shigella flexneri K-227]
          Length = 94

 Score = 41.6 bits (96), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V+++ + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89


>gi|218249932|ref|YP_002374755.1| small DNA-binding protein Hbb [Borrelia burgdorferi ZS7]
 gi|223888785|ref|ZP_03623376.1| DNA-binding protein HU [Borrelia burgdorferi 64b]
 gi|226321550|ref|ZP_03797076.1| DNA-binding protein HU [Borrelia burgdorferi Bol26]
 gi|134104949|pdb|2NP2|A Chain A, Hbb-Dna Complex
 gi|134104950|pdb|2NP2|B Chain B, Hbb-Dna Complex
 gi|1280531|gb|AAC73070.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|1280535|gb|AAC73072.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|1372991|gb|AAB41460.1| Hbb [Borrelia burgdorferi]
 gi|1372994|gb|AAB41461.1| Hbb [Borrelia burgdorferi]
 gi|73762240|gb|AAZ83608.1| Hbb [Borrelia burgdorferi]
 gi|89145706|gb|ABD62042.1| Hbb [Borrelia burgdorferi 297]
 gi|89145708|gb|ABD62043.1| Hbb [Borrelia burgdorferi]
 gi|218165120|gb|ACK75181.1| small DNA-binding protein Hbb [Borrelia burgdorferi ZS7]
 gi|223885601|gb|EEF56700.1| DNA-binding protein HU [Borrelia burgdorferi 64b]
 gi|226232739|gb|EEH31492.1| DNA-binding protein HU [Borrelia burgdorferi Bol26]
          Length = 108

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           +T+SD+V  I+         L +K     +   F E+  +      I+  SF TF V K+
Sbjct: 9   VTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|123441853|ref|YP_001005836.1| integration host factor subunit beta [Yersinia enterocolitica
          subsp. enterocolitica 8081]
 gi|332162205|ref|YP_004298782.1| integration host factor subunit beta [Yersinia enterocolitica
          subsp. palearctica 105.5R(r)]
 gi|166975896|sp|A1JMJ0|IHFB_YERE8 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|122088814|emb|CAL11620.1| integration host factor beta-subunit [Yersinia enterocolitica
          subsp. enterocolitica 8081]
 gi|325666435|gb|ADZ43079.1| integration host factor subunit beta [Yersinia enterocolitica
          subsp. palearctica 105.5R(r)]
 gi|330862895|emb|CBX73032.1| integration host factor subunit beta [Yersinia enterocolitica
          W22703]
          Length = 94

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +   GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLAGQQSHVPTKVVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V+++ + V  FK    L+ R
Sbjct: 61 GRNPKTGAKVELEGKYVPHFKPGKELRDR 89


>gi|238752802|ref|ZP_04614270.1| DNA-binding protein HU-alpha [Yersinia rohdei ATCC 43380]
 gi|238709000|gb|EEQ01250.1| DNA-binding protein HU-alpha [Yersinia rohdei ATCC 43380]
          Length = 67

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          I +S   G+ +++  F TF V  +  R GRN QT +E+KI    V  F +   LK  +
Sbjct: 8  ITESLKDGDPVQLVGFGTFKVNHRNERTGRNPQTGKEIKIAAANVPAFVSGKALKDSV 65


>gi|1280553|gb|AAC73078.1| histone-like protein HBbu [Borrelia garinii]
 gi|1280555|gb|AAC73079.1| histone-like protein HBbu [Borrelia garinii]
          Length = 108

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSI-----SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           IT+SD+V  I     +    L +K     +   F E+  +      I+  SF TF V K+
Sbjct: 9   ITKSDIVDQIFFNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|220922907|ref|YP_002498209.1| histone family protein DNA-binding protein [Methylobacterium
          nodulans ORS 2060]
 gi|219947514|gb|ACL57906.1| histone family protein DNA-binding protein [Methylobacterium
          nodulans ORS 2060]
          Length = 113

 Score = 41.2 bits (95), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + R+ L++ I++    L    +   V T+ + + ++ V+ E I +  F TF    +G+R 
Sbjct: 1  MVRAQLIQRIAELNPHLRPGVAEAVVRTILDRMGEALVQEERIALRGFGTFKTNARGAR- 59

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          G N +T + V +  RR V F+AS+ +  R+ D + G
Sbjct: 60 GHNPRTGEAVAVPARRDVRFRASTEMLHRLNDKVGG 95


>gi|1280591|gb|AAC73105.1| histone-like protein HBbu [Borrelia burgdorferi DN127]
          Length = 108

 Score = 41.2 bits (95), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   VTKSDIVDQISLNIRNNNLKLEKKCIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 60  GSRV-GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
             R+  RN QT + VK+    V  F+    LK+R+ 
Sbjct: 69  RGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|189460994|ref|ZP_03009779.1| hypothetical protein BACCOP_01641 [Bacteroides coprocola DSM
          17136]
 gi|198277723|ref|ZP_03210254.1| hypothetical protein BACPLE_03946 [Bacteroides plebeius DSM
          17135]
 gi|265768064|ref|ZP_06095446.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16]
 gi|319643873|ref|ZP_07998466.1| hypothetical protein HMPREF9011_04069 [Bacteroides sp. 3_1_40A]
 gi|189432333|gb|EDV01318.1| hypothetical protein BACCOP_01641 [Bacteroides coprocola DSM
          17136]
 gi|198269420|gb|EDY93690.1| hypothetical protein BACPLE_03946 [Bacteroides plebeius DSM
          17135]
 gi|263252315|gb|EEZ23851.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16]
 gi|317384614|gb|EFV65579.1| hypothetical protein HMPREF9011_04069 [Bacteroides sp. 3_1_40A]
          Length = 94

 Score = 41.2 bits (95), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S++VK IS   G+  K     +    NE+  S  + E + +  F +F VK++  +  
Sbjct: 1  MTKSEIVKEISARTGIDGKAVLAVLEGFMNEVKTSLGKEENVYLRGFGSFIVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK S
Sbjct: 61 RNISKNTTMIIPAHNIPAFKPS 82


>gi|237709944|ref|ZP_04540425.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237725390|ref|ZP_04555871.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229436077|gb|EEO46154.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229456037|gb|EEO61758.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 474

 Score = 41.2 bits (95), Expect = 0.045,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 49/93 (52%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS+ +T  D+++ ++++  +++KD+  FV  +F  I ++    + +K+    TF + +  
Sbjct: 1  MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALATEKYVKVKGLGTFKLTEVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T + ++I     + F   S +K  I
Sbjct: 61 SRESVNVNTGERIEIQGHTKISFTPDSSMKDLI 93


>gi|254374459|ref|ZP_04989941.1| hypothetical protein FTDG_00629 [Francisella novicida GA99-3548]
 gi|151572179|gb|EDN37833.1| hypothetical protein FTDG_00629 [Francisella novicida GA99-3548]
          Length = 66

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          G+++ +  F TF VK++  R GRN +T + +KI   +V  FKA   LK
Sbjct: 15 GDSVTLVGFGTFQVKERSPREGRNPKTGETIKIPASKVPSFKAGKGLK 62


>gi|298374475|ref|ZP_06984433.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
 gi|298268843|gb|EFI10498.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
          Length = 95

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRV 63
          + R +LVK+++ +  +++ ++ RFV   + E    A+  + ++ +  F TF   ++  R+
Sbjct: 1  MNRRELVKTLADKLSVTQAEAMRFVQA-WEETTTEALESDGSLMLLGFGTFSAWEQTERI 59

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +      I  R+ V FK   +L K++
Sbjct: 60 GRNPKNGVAYMIRARKSVKFKPGKLLLKQL 89


>gi|16759852|ref|NP_455469.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. CT18]
 gi|16764342|ref|NP_459957.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhimurium str. LT2]
 gi|29142375|ref|NP_805717.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. Ty2]
 gi|56413968|ref|YP_151043.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. ATCC 9150]
 gi|62179506|ref|YP_215923.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. SC-B67]
 gi|157146401|ref|YP_001453720.1| integration host factor subunit beta [Citrobacter koseri ATCC
          BAA-895]
 gi|161614782|ref|YP_001588747.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|167553021|ref|ZP_02346771.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|167994928|ref|ZP_02576018.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168233395|ref|ZP_02658453.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|168237083|ref|ZP_02662141.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. SL480]
 gi|168243747|ref|ZP_02668679.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|168263526|ref|ZP_02685499.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|168466573|ref|ZP_02700435.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|168822093|ref|ZP_02834093.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|194442716|ref|YP_002040180.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194450144|ref|YP_002044974.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|194470393|ref|ZP_03076377.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|194734686|ref|YP_002114033.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. CVM19633]
 gi|197248861|ref|YP_002145900.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|197263951|ref|ZP_03164025.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|197362891|ref|YP_002142528.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. AKU_12601]
 gi|198243808|ref|YP_002214906.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|200390103|ref|ZP_03216714.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|204929822|ref|ZP_03220843.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|205352189|ref|YP_002225990.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Gallinarum str. 287/91]
 gi|207856373|ref|YP_002243024.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Enteritidis str. P125109]
 gi|213023562|ref|ZP_03338009.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
 gi|213161606|ref|ZP_03347316.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. E00-7866]
 gi|213416827|ref|ZP_03349971.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. E01-6750]
 gi|213424599|ref|ZP_03357382.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. E02-1180]
 gi|213579894|ref|ZP_03361720.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-0664]
 gi|213649374|ref|ZP_03379427.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. J185]
 gi|213852006|ref|ZP_03381538.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. M223]
 gi|224582791|ref|YP_002636589.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Paratyphi C strain RKS4594]
 gi|238913245|ref|ZP_04657082.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Tennessee str. CDC07-0191]
 gi|283784738|ref|YP_003364603.1| integration host factor beta-subunit (IHF-beta) [Citrobacter
          rodentium ICC168]
 gi|289825855|ref|ZP_06545023.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-3139]
 gi|54037414|sp|P64395|IHFB_SALTI RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|54041369|sp|P64394|IHFB_SALTY RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|75505813|sp|Q57R19|IHFB_SALCH RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|81677856|sp|Q5PGG9|IHFB_SALPA RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|166918543|sp|A8AIH1|IHFB_CITK8 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|189045042|sp|A9N7V2|IHFB_SALPB RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709805|sp|B5F165|IHFB_SALA4 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709806|sp|B5FQ55|IHFB_SALDC RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709807|sp|B5QZB6|IHFB_SALEP RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709808|sp|B5R8J9|IHFB_SALG2 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709809|sp|B4TD42|IHFB_SALHS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709810|sp|B4T146|IHFB_SALNS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709811|sp|B5BBP5|IHFB_SALPK RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709812|sp|B4TRU3|IHFB_SALSV RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|254803539|sp|C0PXU8|IHFB_SALPC RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|25294355|pir||AD0614 integration host factor beta-chain (IHF-beta) [imported] -
          Salmonella enterica subsp. enterica serovar Typhi
          (strain CT18)
 gi|16419494|gb|AAL19916.1| integration host factor (IHF), beta subunit [Salmonella enterica
          subsp. enterica serovar Typhimurium str. LT2]
 gi|16502145|emb|CAD05382.1| integration host factor beta-subunit (IHF-beta) [Salmonella
          enterica subsp. enterica serovar Typhi]
 gi|29138005|gb|AAO69566.1| integration host factor beta-subunit [Salmonella enterica subsp.
          enterica serovar Typhi str. Ty2]
 gi|56128225|gb|AAV77731.1| integration host factor beta-subunit (IHF-beta) [Salmonella
          enterica subsp. enterica serovar Paratyphi A str. ATCC
          9150]
 gi|62127139|gb|AAX64842.1| integration host factor (IHF), beta subunit; site-specific
          recombination [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|157083606|gb|ABV13284.1| hypothetical protein CKO_02160 [Citrobacter koseri ATCC BAA-895]
 gi|161364146|gb|ABX67914.1| hypothetical protein SPAB_02534 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|194401379|gb|ACF61601.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194408448|gb|ACF68667.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|194456757|gb|EDX45596.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|194710188|gb|ACF89409.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. CVM19633]
 gi|195630987|gb|EDX49573.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|197094368|emb|CAR59881.1| integration host factor beta-subunit (IHF-beta) [Salmonella
          enterica subsp. enterica serovar Paratyphi A str.
          AKU_12601]
 gi|197212564|gb|ACH49961.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|197242206|gb|EDY24826.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|197289888|gb|EDY29249.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. SL480]
 gi|197938324|gb|ACH75657.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|199602548|gb|EDZ01094.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|204320816|gb|EDZ06017.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|205271970|emb|CAR36814.1| integration host factor beta-subunit (IHF-beta) [Salmonella
          enterica subsp. enterica serovar Gallinarum str.
          287/91]
 gi|205322456|gb|EDZ10295.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|205327271|gb|EDZ14035.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205332451|gb|EDZ19215.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|205337151|gb|EDZ23915.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|205341519|gb|EDZ28283.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|205347707|gb|EDZ34338.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|206708176|emb|CAR32469.1| integration host factor beta-subunit (IHF-beta) [Salmonella
          enterica subsp. enterica serovar Enteritidis str.
          P125109]
 gi|224467318|gb|ACN45148.1| integration host factor beta subunit [Salmonella enterica subsp.
          enterica serovar Paratyphi C strain RKS4594]
 gi|261246198|emb|CBG24002.1| integration host factor beta-subunit (IHF-beta) [Salmonella
          enterica subsp. enterica serovar Typhimurium str.
          D23580]
 gi|267992720|gb|ACY87605.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhimurium str. 14028S]
 gi|282948192|emb|CBG87759.1| integration host factor beta-subunit (IHF-beta) [Citrobacter
          rodentium ICC168]
 gi|301157525|emb|CBW17015.1| integration host factor beta-subunit (IHF-beta) [Salmonella
          enterica subsp. enterica serovar Typhimurium str.
          SL1344]
 gi|312911968|dbj|BAJ35942.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhimurium str. T000240]
 gi|320085221|emb|CBY95007.1| Integration host factor subunit beta IHF-beta [Salmonella
          enterica subsp. enterica serovar Weltevreden str.
          2007-60-3289-1]
 gi|321223305|gb|EFX48374.1| Integration host factor beta subunit [Salmonella enterica subsp.
          enterica serovar Typhimurium str. TN061786]
 gi|322616412|gb|EFY13321.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315996572]
 gi|322619662|gb|EFY16537.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-1]
 gi|322622642|gb|EFY19487.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-3]
 gi|322629791|gb|EFY26566.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-4]
 gi|322632487|gb|EFY29233.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-1]
 gi|322637018|gb|EFY33721.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-2]
 gi|322641442|gb|EFY38080.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 531954]
 gi|322646092|gb|EFY42608.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649606|gb|EFY46037.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. OH_2009072675]
 gi|322654092|gb|EFY50415.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658624|gb|EFY54886.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 19N]
 gi|322663481|gb|EFY59683.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 81038-01]
 gi|322670217|gb|EFY66357.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671453|gb|EFY67575.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 414877]
 gi|322676809|gb|EFY72876.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 366867]
 gi|322682734|gb|EFY78753.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 413180]
 gi|322686413|gb|EFY82395.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 446600]
 gi|322713975|gb|EFZ05546.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. A50]
 gi|323129247|gb|ADX16677.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhimurium str. 4/74]
 gi|323195936|gb|EFZ81103.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609458-1]
 gi|323199776|gb|EFZ84865.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556150-1]
 gi|323202769|gb|EFZ87805.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609460]
 gi|323209040|gb|EFZ93977.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 507440-20]
 gi|323211516|gb|EFZ96355.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556152]
 gi|323217999|gb|EGA02714.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB101509-0077]
 gi|323219928|gb|EGA04404.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB102109-0047]
 gi|323226704|gb|EGA10900.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB110209-0055]
 gi|323229801|gb|EGA13924.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB111609-0052]
 gi|323233026|gb|EGA17122.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009083312]
 gi|323240761|gb|EGA24803.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009085258]
 gi|323243077|gb|EGA27098.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315731156]
 gi|323249760|gb|EGA33662.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2009159199]
 gi|323252767|gb|EGA36605.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008282]
 gi|323254795|gb|EGA38596.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008283]
 gi|323260004|gb|EGA43632.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008284]
 gi|323267995|gb|EGA51474.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008285]
 gi|323269842|gb|EGA53291.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008287]
 gi|326622659|gb|EGE29004.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Dublin str. 3246]
 gi|326627233|gb|EGE33576.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Gallinarum str. 9]
 gi|332987873|gb|AEF06856.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhimurium str. UK-1]
          Length = 94

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V+++ + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89


>gi|304391395|ref|ZP_07373337.1| DNA-binding protein HU-alpha [Ahrensia sp. R2A130]
 gi|303295624|gb|EFL89982.1| DNA-binding protein HU-alpha [Ahrensia sp. R2A130]
          Length = 91

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++ +  +++  +   +    + + D+   GE +++  F  F V ++ +R+G
Sbjct: 1  MNKQELISAMAGKADMNKDQAGAALEAFIDSVTDALKSGEEVRLLGFGNFVVTRREARMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT    +I    V  FK    LK +I
Sbjct: 61 RNPQTGAATEIAAANVARFKVGKGLKDKI 89


>gi|258648378|ref|ZP_05735847.1| DNA-binding protein HU [Prevotella tannerae ATCC 51259]
 gi|260851548|gb|EEX71417.1| DNA-binding protein HU [Prevotella tannerae ATCC 51259]
          Length = 94

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 41/82 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K+ G+ R      V    N + DS  R + + +  F +F +K++  +  
Sbjct: 1  MTKADIVNEIAKKTGIDRVTVLTTVEAFMNSVKDSLDREQNVYLRGFGSFILKKRAEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTLIIPEHNIPAFKPA 82


>gi|258544425|ref|ZP_05704659.1| DNA-binding protein HU-beta [Cardiobacterium hominis ATCC 15826]
 gi|258520314|gb|EEV89173.1| DNA-binding protein HU-beta [Cardiobacterium hominis ATCC 15826]
          Length = 103

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+    +++  + + +  +   + ++  +G+ + +  F TF  +++ +R G
Sbjct: 1  MNKTELVDAIAAAADITKVQAGKALEAVLESVTETLKKGDKVTLIGFGTFETRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E++I       FKA   LK
Sbjct: 61 RNPQTGKEIQIAASITPAFKAGKKLK 86


>gi|220903373|ref|YP_002478685.1| histone family protein DNA-binding protein [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219867672|gb|ACL48007.1| histone family protein DNA-binding protein [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 91

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRK-DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++LV+ I  + GL  K  +   +  +   + ++   GE++  + F +F V ++ +R 
Sbjct: 1  MTKAELVEKIHAKAGLPTKAKAEEALDAVVAALREALAAGESVTFTGFGSFKVVERAARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  E+ I   +V  F     LK  I
Sbjct: 61 GRNPRTGMEITIPASKVAKFTPGKGLKDAI 90


>gi|209521455|ref|ZP_03270163.1| histone family protein DNA-binding protein [Burkholderia sp.
          H160]
 gi|295676520|ref|YP_003605044.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1002]
 gi|209498111|gb|EDZ98258.1| histone family protein DNA-binding protein [Burkholderia sp.
          H160]
 gi|295436363|gb|ADG15533.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1002]
          Length = 90

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+++  +S+  + R +  +   +  +  +G ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIDHIAQQADISKAAAGRALDAVIAGVKSTLKKGGSVTLVGFGTFAVGKRTARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   +KI   +V  F+    LK
Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALK 86


>gi|171058612|ref|YP_001790961.1| histone family protein DNA-binding protein [Leptothrix cholodnii
           SP-6]
 gi|170776057|gb|ACB34196.1| histone family protein DNA-binding protein [Leptothrix cholodnii
           SP-6]
          Length = 116

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 49/87 (56%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+ +S+L++ I+++  +S+  + R +  L   +  +  +G+++ +  F TF V ++ +R 
Sbjct: 26  TVNKSELIEHIAEKADISKAAAARALEALIGGVKSTLKKGDSVSLVGFGTFAVTKRAARS 85

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN +T   +KI   +V  F+    LK
Sbjct: 86  GRNPRTGAVIKIKSSKVPKFRPGKALK 112


>gi|332885920|gb|EGK06164.1| hypothetical protein HMPREF9456_00038 [Dysgonomonas mossii DSM
          22836]
          Length = 91

 Score = 41.2 bits (95), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 41/82 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +    + V +  + + DS  + E + +  F +F VK +  +  
Sbjct: 1  MTKADIVNEIAKNTGIDKATVLKTVESFMDVVKDSLSKNENVYLRGFGSFIVKTRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTIIIPAHSIPAFKPA 82


>gi|332826704|gb|EGJ99526.1| hypothetical protein HMPREF9455_04122 [Dysgonomonas gadei ATCC
          BAA-286]
          Length = 91

 Score = 41.2 bits (95), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 41/82 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +    + V +  + + DS  + E + +  F +F VK +  +  
Sbjct: 1  MTKADIVNEIAKNTGIDKATVLKTVESFMDVVKDSLSKNENVYLRGFGSFIVKTRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTIIIPAHSIPAFKPA 82


>gi|253570965|ref|ZP_04848373.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|319644004|ref|ZP_07998563.1| hypothetical protein HMPREF9011_04166 [Bacteroides sp. 3_1_40A]
 gi|251839914|gb|EES67997.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|313157143|gb|EFR56573.1| putative DNA-binding protein HU-alpha [Alistipes sp. HGB5]
 gi|317384352|gb|EFV65320.1| hypothetical protein HMPREF9011_04166 [Bacteroides sp. 3_1_40A]
          Length = 93

 Score = 41.2 bits (95), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 18/82 (21%), Positives = 42/82 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++V  IS++ G+ +      + +    + +S V G  + +  F +F +K++  +  
Sbjct: 1  MTKAEIVAQISRQSGIEKTVVMTVIESFMENVKESMVAGNEVFLRGFGSFIIKRRAEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  +KI    +  FK +
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPA 82


>gi|215486037|ref|YP_002328468.1| integration host factor subunit beta [Escherichia coli O127:H6
          str. E2348/69]
 gi|254803532|sp|B7UMZ8|IHFB_ECO27 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|215264109|emb|CAS08453.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli O127:H6 str. E2348/69]
          Length = 94

 Score = 41.2 bits (95), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLATQQSHIPAKTVEDAVKDMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V+++ + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89


>gi|294782111|ref|ZP_06747437.1| DNA-binding protein HU [Fusobacterium sp. 1_1_41FAA]
 gi|294480752|gb|EFG28527.1| DNA-binding protein HU [Fusobacterium sp. 1_1_41FAA]
          Length = 102

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 36/65 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V + +K+  L  KDS R V      + ++ ++GE ++   F ++ VK++ +R  
Sbjct: 1  MTKKEFVDAFAKKAELKLKDSERLVAAFLETVEEALLKGEGVRFIGFGSWEVKERAAREV 60

Query: 65 RNLQT 69
           N QT
Sbjct: 61 TNPQT 65


>gi|1280595|gb|AAC73107.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF + K+
Sbjct: 9   VTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFELRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|34762422|ref|ZP_00143422.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. vincentii
          ATCC 49256]
 gi|237741782|ref|ZP_04572263.1| DNA-binding protein HU [Fusobacterium sp. 4_1_13]
 gi|256845110|ref|ZP_05550568.1| integration host factor, alpha subunit [Fusobacterium sp.
          3_1_36A2]
 gi|294785602|ref|ZP_06750890.1| DNA-binding protein HU [Fusobacterium sp. 3_1_27]
 gi|27887890|gb|EAA24958.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. vincentii
          ATCC 49256]
 gi|229429430|gb|EEO39642.1| DNA-binding protein HU [Fusobacterium sp. 4_1_13]
 gi|256718669|gb|EEU32224.1| integration host factor, alpha subunit [Fusobacterium sp.
          3_1_36A2]
 gi|294487316|gb|EFG34678.1| DNA-binding protein HU [Fusobacterium sp. 3_1_27]
          Length = 91

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 37/66 (56%)

Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80
          +R ++ + V  +FN +    + GE + I +F    V ++  R+GRN +T +EVKI  R+ 
Sbjct: 18 TRTEAEKKVDIIFNSMEKILLDGENLSIINFGKLEVIERAPRLGRNPKTGEEVKIGKRKS 77

Query: 81 VVFKAS 86
          + F+  
Sbjct: 78 IKFRPG 83


>gi|1280573|gb|AAC73094.1| histone-like protein HBbu [Borrelia afzelii]
          Length = 108

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           +T+SD+V  I+         L +K     +   F E+  +      I+  SF TF V K+
Sbjct: 9   VTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 69  KGRLNARNPQTGEYVKVLDHNVAYFRPGKDLKERVW 104


>gi|237744930|ref|ZP_04575411.1| DNA-binding protein HU [Fusobacterium sp. 7_1]
 gi|256028389|ref|ZP_05442223.1| DNA-binding protein HU [Fusobacterium sp. D11]
 gi|260494711|ref|ZP_05814841.1| integration host factor, alpha subunit [Fusobacterium sp. 3_1_33]
 gi|289766314|ref|ZP_06525692.1| DNA-binding protein HU [Fusobacterium sp. D11]
 gi|229432159|gb|EEO42371.1| DNA-binding protein HU [Fusobacterium sp. 7_1]
 gi|260197873|gb|EEW95390.1| integration host factor, alpha subunit [Fusobacterium sp. 3_1_33]
 gi|289717869|gb|EFD81881.1| DNA-binding protein HU [Fusobacterium sp. D11]
          Length = 91

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 37/66 (56%)

Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80
          +R ++ + V  +FN +    + GE + I +F    V ++  R+GRN +T +EVKI  R+ 
Sbjct: 18 TRTEAEKKVDIIFNSMEKILLDGENLSIINFGKLEVIERAPRLGRNPKTGEEVKIGKRKS 77

Query: 81 VVFKAS 86
          + F+  
Sbjct: 78 IKFRPG 83


>gi|265753596|ref|ZP_06088951.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263235310|gb|EEZ20834.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 474

 Score = 41.2 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 49/93 (52%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS+ +T  D+++ ++++  +++KD+  FV  +F  I ++    + +K+    TF + +  
Sbjct: 1  MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALATEKYVKVKGLGTFKLTEVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T + ++I     + F   S +K  I
Sbjct: 61 SRESVNVNTGERIEIQGHTKISFTPDSSMKDLI 93


>gi|257456676|ref|ZP_05621869.1| DNA-binding protein, HU family [Treponema vincentii ATCC 35580]
 gi|257445943|gb|EEV20993.1| DNA-binding protein, HU family [Treponema vincentii ATCC 35580]
          Length = 112

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK-QKGSRVG 64
          T++ +V +I K+     KD        F E+  +  RGE I+I  F TF V+ +KG +  
Sbjct: 11 TKTSIVDAIYKKSDHMLKDIHSVSDLFFAEMFQALERGETIEIRGFGTFSVQFRKGRKGM 70

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN +T + V      VVVF+   IL
Sbjct: 71 RNPKTGELVDTADHSVVVFRPGKIL 95


>gi|167948154|ref|ZP_02535228.1| integration host factor, alpha subunit [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 104

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH--VKQKGS 61
          ++T++D+ + +  E GL+++++   V   F EI  +   G  +K+S F  F   V++K  
Sbjct: 2  SLTKADMAERLFDELGLNKREAKEMVEMFFEEIRRALEEGSQVKLSGFGNFDPGVEKKQR 61

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
                +  +  +  P  +V F+    LK R+
Sbjct: 62 PRSYTQKPEKRSRSPPAELVTFRPGQTLKARV 93


>gi|85057510|ref|YP_456426.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
          AYWB]
 gi|84789615|gb|ABC65347.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
          AYWB]
          Length = 96

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGSRV 63
          +T+ +L+K+I++    S   +  F  +  + + +S    E + +SS    F +K + +  
Sbjct: 1  MTKKELIKNIAEANKTSISKTEEFYHSFEHTLIESITSNEEVILSSKIGKFILKTRKAYT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN QT +++KI  + +V FK S  +K ++ D
Sbjct: 61 GRNPQTGKKLKIPAKTIVTFKLSKTIKDKVKD 92


>gi|117928796|ref|YP_873347.1| histone family protein DNA-binding protein [Acidothermus
          cellulolyticus 11B]
 gi|117649259|gb|ABK53361.1| histone family protein DNA-binding protein [Acidothermus
          cellulolyticus 11B]
          Length = 163

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++   G  +K ++  V  + + I  +  RGE + I+ F  F   ++ +R+ 
Sbjct: 1  MNKAELITAVAARIG-DKKTASEAVEAVIDTITRTVARGEKVAITGFGIFEKVERAARMA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN  T + V++    V  F+A + LK
Sbjct: 60 RNPATGERVRVKKTSVPKFRAGTRLK 85


>gi|237744441|ref|ZP_04574922.1| DNA-binding protein HU [Fusobacterium sp. 7_1]
 gi|256027212|ref|ZP_05441046.1| DNA-binding protein HU [Fusobacterium sp. D11]
 gi|260494006|ref|ZP_05814137.1| integration host factor, beta subunit [Fusobacterium sp. 3_1_33]
 gi|289765189|ref|ZP_06524567.1| DNA-binding protein HU [Fusobacterium sp. D11]
 gi|229431670|gb|EEO41882.1| DNA-binding protein HU [Fusobacterium sp. 7_1]
 gi|260198152|gb|EEW95668.1| integration host factor, beta subunit [Fusobacterium sp. 3_1_33]
 gi|289716744|gb|EFD80756.1| DNA-binding protein HU [Fusobacterium sp. D11]
          Length = 102

 Score = 41.2 bits (95), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 38/67 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V + +++  L  KDS R V      I D+ ++G+ ++   F ++ VK++ +R  
Sbjct: 1  MTKKEFVNAFAEKGELKIKDSERLVNAFLETIEDALLKGDGVRFIGFGSWEVKERSAREV 60

Query: 65 RNLQTNQ 71
          +N QT +
Sbjct: 61 KNPQTGK 67


>gi|288800013|ref|ZP_06405472.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333261|gb|EFC71740.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039]
          Length = 97

 Score = 41.2 bits (95), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 19/85 (22%), Positives = 47/85 (55%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          + +  +S++   +++ +   +  + + +  +   GE++ +S F TF VK++  R+  N  
Sbjct: 5  EFITELSRQLEYTQEHTQGCIRCVIDAMSMAFDNGESVSVSGFGTFEVKKRLERIMVNPS 64

Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93
          T Q + + P+ V+ FK S+ +K+ +
Sbjct: 65 TGQRMIVPPKLVLNFKPSASIKEEL 89


>gi|152983243|ref|YP_001353224.1| DNA-binding protein HU-beta ( histone-like DNA-binding protein)
          [Janthinobacterium sp. Marseille]
 gi|151283320|gb|ABR91730.1| DNA-binding protein Hu-beta (bacterial histone-like DNA-binding
          protein) [Janthinobacterium sp. Marseille]
          Length = 90

 Score = 41.2 bits (95), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+    +S+  + R + ++   +  +  +  ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIDHIAGSADISKAAAARALDSVIGAVKTTLKKNGSVTLVGFGTFSVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + +KI   +V  FK    LK
Sbjct: 61 RNPRTGEAIKIKAAKVPKFKPGKALK 86


>gi|114775527|ref|ZP_01451095.1| histone-like protein [Mariprofundus ferrooxydans PV-1]
 gi|114553638|gb|EAU56019.1| histone-like protein [Mariprofundus ferrooxydans PV-1]
          Length = 90

 Score = 41.2 bits (95), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 41/89 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  ++   G+S+  +   V  + + I  S   G ++ +  F TF V  + +R  
Sbjct: 1  MNKTDLIDHVASSAGMSKTAAGDAVDAVLSGITASLSGGGSVSLVGFGTFSVTARAARTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + +       FK    LK  +
Sbjct: 61 RNPRTGEAIAVAASNAPKFKPGKALKDAV 89


>gi|302560391|ref|ZP_07312733.1| DNA-binding protein HU [Streptomyces griseoflavus Tu4000]
 gi|302478009|gb|EFL41102.1| DNA-binding protein HU [Streptomyces griseoflavus Tu4000]
          Length = 93

 Score = 41.2 bits (95), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV +++    ++RKD+   +      + D   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDIVSKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN QT + ++I     V   A S LK+
Sbjct: 61 ARNPQTGEPIQIPAGYSVKVSAGSKLKE 88


>gi|254461410|ref|ZP_05074826.1| DNA-binding protein HU [Rhodobacterales bacterium HTCC2083]
 gi|206677999|gb|EDZ42486.1| DNA-binding protein HU [Rhodobacteraceae bacterium HTCC2083]
          Length = 95

 Score = 40.8 bits (94), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 45/90 (50%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +T++ LV ++++E G  +K S   +  +   I      G A+ +      + +++ 
Sbjct: 1  MAKPMTKTQLVAALAEEMGADKKASGAALDAVCALITREVSGGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
           R+ RN  T +++K D  +VV    +  LK
Sbjct: 61 ERMVRNPATGEQIKKDADKVVKMTIAKALK 90


>gi|212693202|ref|ZP_03301330.1| hypothetical protein BACDOR_02712 [Bacteroides dorei DSM 17855]
 gi|212664307|gb|EEB24879.1| hypothetical protein BACDOR_02712 [Bacteroides dorei DSM 17855]
          Length = 439

 Score = 40.8 bits (94), Expect = 0.056,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 49/93 (52%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS+ +T  D+++ ++++  +++KD+  FV  +F  I ++    + +K+    TF + +  
Sbjct: 1  MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALATEKYVKVKGLGTFKLTEVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T + ++I     + F   S +K  I
Sbjct: 61 SRESVNVNTGERIEIQGHTKISFTPDSSMKDLI 93


>gi|290959979|ref|YP_003491161.1| DNA-binding protein HU1/hs1 [Streptomyces scabiei 87.22]
 gi|260649505|emb|CBG72620.1| DNA-binding protein HU1/hs1 [Streptomyces scabiei 87.22]
          Length = 93

 Score = 40.8 bits (94), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV +++    ++RKD+   +      + D   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDIVAKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN QT   ++I     V   A S LK+
Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKE 88


>gi|49146394|ref|YP_025502.1| putative integration host factor alpha subunit [Caedibacter
           taeniospiralis]
 gi|40458362|gb|AAR87110.1| putative integration host factor alpha subunit [Caedibacter
           taeniospiralis]
          Length = 183

 Score = 40.8 bits (94), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 49/95 (51%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +++++R++L+K +S +   SR+D   F   L N + +  +    I +     F  +    
Sbjct: 30  NRSMSRNELIKHLSLKTKFSREDCNHFFYELMNLLREQLLNNRIILLEGLGRFETRVSFR 89

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           +   N +T +++K   +RVV+FK ++  K  I D+
Sbjct: 90  KNAHNPRTMEKIKPREKRVVLFKFANEFKALISDE 124


>gi|21221395|ref|NP_627174.1| DNA-binding protein HU (hs1) [Streptomyces coelicolor A3(2)]
 gi|239981939|ref|ZP_04704463.1| DNA-binding protein HU (hs1) [Streptomyces albus J1074]
 gi|256787421|ref|ZP_05525852.1| DNA-binding protein HU (hs1) [Streptomyces lividans TK24]
 gi|289771320|ref|ZP_06530698.1| HSl protein [Streptomyces lividans TK24]
 gi|291453793|ref|ZP_06593183.1| DNA-binding protein Hu [Streptomyces albus J1074]
 gi|61222642|sp|P0A3H5|DBH1_STRCO RecName: Full=DNA-binding protein HU 1; AltName: Full=HSl
 gi|61222644|sp|P0A3H6|DBH1_STRLI RecName: Full=DNA-binding protein HU 1; AltName: Full=HSl
 gi|2104560|dbj|BAA19970.1| HSl protein [Streptomyces lividans TK24]
 gi|6063408|dbj|BAA85334.1| histone-like protein HSl [Streptomyces lividans]
 gi|6911980|emb|CAB72196.1| DNA-binding protein Hu (hs1) [Streptomyces coelicolor A3(2)]
 gi|289701519|gb|EFD68948.1| HSl protein [Streptomyces lividans TK24]
 gi|291356742|gb|EFE83644.1| DNA-binding protein Hu [Streptomyces albus J1074]
          Length = 93

 Score = 40.8 bits (94), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV +++    ++RKD+   +      + D   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDIVSKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN QT + ++I     V   A S LK+
Sbjct: 61 ARNPQTGEPIQIPAGYSVKVSAGSKLKE 88


>gi|332298535|ref|YP_004440457.1| histone family protein DNA-binding protein [Treponema
          brennaborense DSM 12168]
 gi|332181638|gb|AEE17326.1| histone family protein DNA-binding protein [Treponema
          brennaborense DSM 12168]
          Length = 101

 Score = 40.8 bits (94), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK-QKGSRV 63
          +T+ DL++S+ +     ++       +L ++I +S   G  I++  F TF  + +KG + 
Sbjct: 4  VTKYDLIESVYQNTKCEKRVVQEVFESLLDQIKESLKSGATIELRGFGTFEPRLRKGRKK 63

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN +T   + + P  +  F++   LK  + +
Sbjct: 64 ARNPKTGDHLSVPPHYIAAFRSGQELKNALWN 95


>gi|150008609|ref|YP_001303352.1| DNA-binding protein HU [Parabacteroides distasonis ATCC 8503]
 gi|255014407|ref|ZP_05286533.1| DNA-binding protein HU [Bacteroides sp. 2_1_7]
 gi|256841374|ref|ZP_05546881.1| integration host factor, beta subunit [Parabacteroides sp. D13]
 gi|262383459|ref|ZP_06076595.1| DNA-binding protein HU [Bacteroides sp. 2_1_33B]
 gi|298376095|ref|ZP_06986051.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
 gi|301309507|ref|ZP_07215449.1| DNA-binding protein HU [Bacteroides sp. 20_3]
 gi|149937033|gb|ABR43730.1| DNA-binding protein HU [Parabacteroides distasonis ATCC 8503]
 gi|256737217|gb|EEU50544.1| integration host factor, beta subunit [Parabacteroides sp. D13]
 gi|262294357|gb|EEY82289.1| DNA-binding protein HU [Bacteroides sp. 2_1_33B]
 gi|298267132|gb|EFI08789.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
 gi|300832596|gb|EFK63224.1| DNA-binding protein HU [Bacteroides sp. 20_3]
          Length = 90

 Score = 40.8 bits (94), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 42/82 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  ISK  G+ ++     V +  + +  S  +GE + +  F +F +K++  +  
Sbjct: 1  MTKADIVSEISKSTGIDKQTVLASVESFMDIVKSSLAQGENVYLRGFGSFVIKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTIIIPEHNIPSFKPA 82


>gi|297156917|gb|ADI06629.1| putative histone-like DNA binding protein [Streptomyces
          bingchenggensis BCW-1]
          Length = 189

 Score = 40.8 bits (94), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV++I+ + G  R+ +   V  + + +  + V GE + ++ F +F   ++ +R  
Sbjct: 1  MNKAQLVEAIADKLG-GRQQAAEAVDAVLDAMVRAVVSGERVSVTGFGSFEKVERPARYA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + V++    V  F+A    K
Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85


>gi|160886223|ref|ZP_02067226.1| hypothetical protein BACOVA_04230 [Bacteroides ovatus ATCC 8483]
 gi|237715013|ref|ZP_04545494.1| DNA-binding protein HU [Bacteroides sp. D1]
 gi|237723035|ref|ZP_04553516.1| DNA-binding protein HU [Bacteroides sp. 2_2_4]
 gi|255690595|ref|ZP_05414270.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565]
 gi|260173653|ref|ZP_05760065.1| DNA-binding protein HU [Bacteroides sp. D2]
 gi|262409038|ref|ZP_06085583.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22]
 gi|293372582|ref|ZP_06618964.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
 gi|294647093|ref|ZP_06724699.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a]
 gi|294807153|ref|ZP_06765970.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b]
 gi|298481899|ref|ZP_07000089.1| DNA-binding protein HU [Bacteroides sp. D22]
 gi|299146728|ref|ZP_07039796.1| DNA-binding protein HU [Bacteroides sp. 3_1_23]
 gi|315921915|ref|ZP_07918155.1| DNA binding protein [Bacteroides sp. D2]
 gi|156108108|gb|EDO09853.1| hypothetical protein BACOVA_04230 [Bacteroides ovatus ATCC 8483]
 gi|229444846|gb|EEO50637.1| DNA-binding protein HU [Bacteroides sp. D1]
 gi|229447557|gb|EEO53348.1| DNA-binding protein HU [Bacteroides sp. 2_2_4]
 gi|260623864|gb|EEX46735.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565]
 gi|262353249|gb|EEZ02344.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22]
 gi|292632391|gb|EFF50987.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
 gi|292637557|gb|EFF55969.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a]
 gi|294445653|gb|EFG14303.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b]
 gi|295087866|emb|CBK69389.1| Bacterial nucleoid DNA-binding protein [Bacteroides xylanisolvens
          XB1A]
 gi|298272121|gb|EFI13692.1| DNA-binding protein HU [Bacteroides sp. D22]
 gi|298517219|gb|EFI41100.1| DNA-binding protein HU [Bacteroides sp. 3_1_23]
 gi|313695790|gb|EFS32625.1| DNA binding protein [Bacteroides sp. D2]
          Length = 91

 Score = 40.8 bits (94), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 41/82 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K+ G+ ++     V    + + DS    E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEITKKTGIDKQTVLTTVEAFMDAVKDSLSNDENVYLRGFGSFVVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82


>gi|118581076|ref|YP_902326.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
 gi|118503786|gb|ABL00269.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
          Length = 91

 Score = 40.8 bits (94), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 19/86 (22%), Positives = 44/86 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  +++   +++  + + +      + ++   GE + ++ F TF    + +R+G
Sbjct: 1  MTKAELVARMAESGDITKAAAEKALGGFIEAVTEAIKAGEKVTLTGFGTFSAVTRAARIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN  T QE++I  +    F     LK
Sbjct: 61 RNPATGQELQIAAKTSAKFSPGKELK 86


>gi|296536157|ref|ZP_06898285.1| DNA-binding protein HU [Roseomonas cervicalis ATCC 49957]
 gi|296263528|gb|EFH10025.1| DNA-binding protein HU [Roseomonas cervicalis ATCC 49957]
          Length = 90

 Score = 40.8 bits (94), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 44/86 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLV  +++   LS+  +   +  +F+ I  S    + +++  F TF   ++ +  G
Sbjct: 1  MNKQDLVAVVAETGELSKAKAGEVLDAVFDAISQSLKAKQEVRLVGFGTFSTSRRKAGKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E++I     V FKA   LK
Sbjct: 61 RNPRTGEEIEIAATTTVRFKAGKALK 86


>gi|221135421|ref|ZP_03561724.1| integration host factor, beta subunit [Glaciecola sp. HTCC2999]
          Length = 93

 Score = 40.8 bits (94), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ +   +  +  ++    V  L   +  +  RGE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIEKLMTSYDEVQTREIEVAVKELLEYMAQTLQRGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V++  + V  FK    L+ R+
Sbjct: 61 GRNPKTGELVELSGKYVPHFKPGKELRDRV 90


>gi|237730875|ref|ZP_04561356.1| integration host factor subunit beta [Citrobacter sp. 30_2]
 gi|283833797|ref|ZP_06353538.1| integration host factor, beta subunit [Citrobacter youngae ATCC
          29220]
 gi|226906414|gb|EEH92332.1| integration host factor subunit beta [Citrobacter sp. 30_2]
 gi|291070462|gb|EFE08571.1| integration host factor, beta subunit [Citrobacter youngae ATCC
          29220]
          Length = 94

 Score = 40.8 bits (94), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLATQQPHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V ++ + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVDLEGKYVPHFKPGKELRDR 89


>gi|212550692|ref|YP_002309009.1| DNA-binding protein HU [Candidatus Azobacteroides
          pseudotrichonymphae genomovar. CFP2]
 gi|212548930|dbj|BAG83598.1| DNA-binding protein HU [Candidatus Azobacteroides
          pseudotrichonymphae genomovar. CFP2]
          Length = 102

 Score = 40.8 bits (94), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 49/94 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ ++V +I++  G+ R+     +     E+  S   GE I +  F TF  K++ ++  
Sbjct: 1  MTKKEIVVTIAENTGIDRESVLAVIEEFMREVTFSLSSGENIYLRFFGTFKAKKRAAKPA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN++ N  + +  R V  FK S   K +++D M+
Sbjct: 61 RNIKKNTTIFLPERYVPHFKPSDYFKNKVIDGMK 94


>gi|147678826|ref|YP_001213041.1| nucleoid DNA-binding protein [Pelotomaculum thermopropionicum SI]
 gi|146274923|dbj|BAF60672.1| bacterial nucleoid DNA-binding protein [Pelotomaculum
          thermopropionicum SI]
          Length = 92

 Score = 40.8 bits (94), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 31/50 (62%)

Query: 46 IKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +++  F  F ++ +  R GR+++T Q + I  ++V+VFK    L++ ++D
Sbjct: 43 VRLRGFGAFIIRDRSPRAGRDIRTGQPISIPAKKVIVFKPGKALRQAVLD 92


>gi|70724874|ref|YP_257083.1| hypothetical protein pSG2GP_12 [Sodalis glossinidius]
 gi|85060469|ref|YP_456169.1| DNA-binding protein [Sodalis glossinidius str. 'morsitans']
 gi|68697091|emb|CAI59372.1| hypothetical protein pSG2.12 [Sodalis glossinidius]
 gi|68697121|emb|CAI59586.1| hypothetical protein pSG2.12 [Sodalis glossinidius]
 gi|84780989|dbj|BAE75764.1| DNA-binding protein [Sodalis glossinidius str. 'morsitans']
          Length = 78

 Score = 40.8 bits (94), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 37/66 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+ ++ ++  +++  +   V+     I ++   GE++ +S F  F VK++  R G
Sbjct: 1  MNKSDLINAVIEKSDITQVKAGYVVSAFVAAITEALAAGESVALSGFGVFGVKERAERSG 60

Query: 65 RNLQTN 70
          RN QT 
Sbjct: 61 RNPQTG 66


>gi|257463408|ref|ZP_05627803.1| DNA-binding protein HU [Fusobacterium sp. D12]
 gi|317060975|ref|ZP_07925460.1| DNA-binding protein HU [Fusobacterium sp. D12]
 gi|313686651|gb|EFS23486.1| DNA-binding protein HU [Fusobacterium sp. D12]
          Length = 91

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 18/73 (24%), Positives = 42/73 (57%)

Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80
          S+ ++ R + T+F+ + +  +R  +  I+++    V ++  R+GRN +T +EVKI  R+ 
Sbjct: 18 SKAEAERNIETIFSLMEECIIRDGSFSITNWGKLEVVERAPRLGRNPKTGEEVKIPSRKS 77

Query: 81 VVFKASSILKKRI 93
          + F+      +++
Sbjct: 78 IKFRPGKAFLEKL 90


>gi|225873629|ref|YP_002755088.1| DNA-binding protein HU [Acidobacterium capsulatum ATCC 51196]
 gi|225793084|gb|ACO33174.1| DNA-binding protein HU [Acidobacterium capsulatum ATCC 51196]
          Length = 98

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 44/86 (51%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+ T+T++ LV+ ++++  L+ K +  F+  L         +     I         ++ 
Sbjct: 1  MATTMTKTALVRHMAEKLELTNKQAAAFLDLLAETAIKETKKNGVFVIPGLGRLVKAERK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86
          +R+GRN QT +++KI  + VV F+ +
Sbjct: 61 ARIGRNPQTGEQIKIKAKTVVKFRVA 86


>gi|190014828|ref|YP_001967592.1| orf_Bo196 [Agrobacterium tumefaciens]
 gi|71849631|gb|AAZ50579.1| orf_Bo196 [Agrobacterium tumefaciens]
          Length = 92

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 39/85 (45%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++ + I+ E  L++  +   V T+F  I  +A  G    I  F  F +K    R  R
Sbjct: 3  TTNEIAEKIASEQNLTKAQAKSIVETVFASITTAATSGAETSIPGFGKFKIKDTPEREAR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90
          N  T   +K+   + + F+ +  LK
Sbjct: 63 NPATGATIKVAAAKKLTFQPAKALK 87


>gi|296270760|ref|YP_003653392.1| histone family protein DNA-binding protein [Thermobispora bispora
          DSM 43833]
 gi|296093547|gb|ADG89499.1| histone family protein DNA-binding protein [Thermobispora bispora
          DSM 43833]
          Length = 98

 Score = 40.8 bits (94), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV++I+   G  +K +T  V  +   I ++  RG+ + I+ F  F +  K +R  
Sbjct: 1  MNKRELVEAIADRVG-DKKTATEAVNAVLETIQNAVARGDKVSITGFGAFEMVHKPARTA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T   +K++      F+  +  K+ +
Sbjct: 60 RNPSTGAPIKVEESWAPRFRPGAEFKELV 88


>gi|303326015|ref|ZP_07356458.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3]
 gi|302863931|gb|EFL86862.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3]
          Length = 91

 Score = 40.8 bits (94), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTR-----FVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          +T+++LV+ I  + GL  K          V +L   + D    GE++  + F +F V  +
Sbjct: 1  MTKAELVEKIHAKAGLPTKAKAEEALDAVVASLREALAD----GESVTFTGFGSFKVVAR 56

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           +R GRN +T +E+ I   +V  F     LK  I
Sbjct: 57 AARKGRNPRTGKEITIPASKVAKFTPGKGLKDAI 90


>gi|331000500|ref|ZP_08324173.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis
          YIT 11859]
 gi|329571488|gb|EGG53172.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis
          YIT 11859]
          Length = 92

 Score = 40.8 bits (94), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 38/71 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV ++++  G  + D    +  L  +I  +   G+ + +  F TF   ++ +RVG
Sbjct: 1  MNKTELVTAVAEVSGKPKADVKEVLEALMGQIIKTVKSGDEVALVGFGTFKSAKREARVG 60

Query: 65 RNLQTNQEVKI 75
          RN  T  E+KI
Sbjct: 61 RNPATGAELKI 71


>gi|331001163|ref|ZP_08324791.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis
          YIT 11859]
 gi|329569251|gb|EGG51040.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis
          YIT 11859]
          Length = 92

 Score = 40.8 bits (94), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 38/71 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV ++++  G  + D    +  L  +I  +   G+ + +  F TF   ++ +RVG
Sbjct: 1  MNKTELVATVAEVSGKPKADVKEVLEALLGQIIKTVKSGDEVTLVGFGTFKSAKREARVG 60

Query: 65 RNLQTNQEVKI 75
          RN  T  E+KI
Sbjct: 61 RNPATGAELKI 71


>gi|34811460|pdb|1OUZ|B Chain B, Crystal Structure Of A Mutant Ihf (Betae44a) Complexed
          With A Variant H' Site (T44a)
 gi|34811465|pdb|1OWF|B Chain B, Crystal Structure Of A Mutant Ihf (Betae44a) Complexed
          With The Native H' Site
          Length = 94

 Score = 40.8 bits (94), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +  +GE I I  F +F +  +  R 
Sbjct: 1  MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIAIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V+++ + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89


>gi|147678837|ref|YP_001213052.1| nucleoid DNA-binding protein [Pelotomaculum thermopropionicum SI]
 gi|146274934|dbj|BAF60683.1| bacterial nucleoid DNA-binding protein [Pelotomaculum
          thermopropionicum SI]
          Length = 89

 Score = 40.8 bits (94), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 41/83 (49%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          +LV+ ++ E G+++  +   +  L + +      G  ++ +   TF    +  R  RNLQ
Sbjct: 5  ELVRLLAAETGVTQGQAKAVLDALPDVVLSLVQAGHPVRFAGLGTFQAVTRQPRKARNLQ 64

Query: 69 TNQEVKIDPRRVVVFKASSILKK 91
          T + V +  RR++ F+A    +K
Sbjct: 65 TGEPVMVPARRMLSFRAERKYRK 87


>gi|332881402|ref|ZP_08449052.1| DNA-binding protein HU-beta [Capnocytophaga sp. oral taxon 329
          str. F0087]
 gi|332680778|gb|EGJ53725.1| DNA-binding protein HU-beta [Capnocytophaga sp. oral taxon 329
          str. F0087]
          Length = 107

 Score = 40.8 bits (94), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 16/69 (23%), Positives = 42/69 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I++  GL++ D+ + +    + I ++  +G+ I +  F TF V ++ +R G
Sbjct: 18 MNKTELINAIAENAGLNKADAKKALDATISAISEALKKGDKIALVGFGTFSVNERPARTG 77

Query: 65 RNLQTNQEV 73
           N +T +++
Sbjct: 78 INPRTKEQI 86


>gi|332704460|ref|ZP_08424548.1| histone family protein DNA-binding protein [Desulfovibrio
          africanus str. Walvis Bay]
 gi|332554609|gb|EGJ51653.1| histone family protein DNA-binding protein [Desulfovibrio
          africanus str. Walvis Bay]
          Length = 185

 Score = 40.8 bits (94), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDST-RFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TR +++ ++     L  K +  + +  +   + +    G ++ I  F +FHVK    R 
Sbjct: 1  MTRQEIIDTLQTAADLPDKTTAGKALDAILESMTEELASGGSVLIRGFGSFHVKIVAERQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GR+ +TNQ + I   R V F+    L++ ++
Sbjct: 61 GRDFKTNQPIHIPAYRTVKFEPGVELRQFVI 91


>gi|288928985|ref|ZP_06422831.1| DNA-binding protein HU [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329969|gb|EFC68554.1| DNA-binding protein HU [Prevotella sp. oral taxon 317 str. F0108]
          Length = 90

 Score = 40.8 bits (94), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 40/71 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  I+   GLS+ DS + +      I ++ V+G+ +++  F TF V ++ +  G
Sbjct: 1  MNKTDLIDKIAAGSGLSKADSKKALDATVAAIKETLVKGDKVQLVGFGTFSVNERPAHGG 60

Query: 65 RNLQTNQEVKI 75
           N  T +++ I
Sbjct: 61 VNPATKEKITI 71


>gi|256419934|ref|YP_003120587.1| histone family protein DNA-binding protein [Chitinophaga pinensis
          DSM 2588]
 gi|256034842|gb|ACU58386.1| histone family protein DNA-binding protein [Chitinophaga pinensis
          DSM 2588]
          Length = 89

 Score = 40.8 bits (94), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 16/67 (23%), Positives = 38/67 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++K+ G+++  +   + +    + D+  +G  + +  F TF V ++ +R G
Sbjct: 1  MNKAELIDKLAKDAGITKTQANEALDSFTKAVADTLKKGGKVTLVGFGTFSVSKRAARNG 60

Query: 65 RNLQTNQ 71
          RN QT Q
Sbjct: 61 RNPQTGQ 67


>gi|291461216|ref|ZP_06027675.2| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693]
 gi|291378149|gb|EFE85667.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693]
          Length = 107

 Score = 40.8 bits (94), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 36/65 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V + +K+  L  KDS R V      + D+ ++GE ++   F ++ V+++ +R  
Sbjct: 6  MTKKEFVDAFAKKGELKIKDSERLVAAFLETVEDALLKGEGVRFIGFGSWEVRERAAREV 65

Query: 65 RNLQT 69
           N QT
Sbjct: 66 TNPQT 70


>gi|288926928|ref|ZP_06420826.1| DNA-binding protein HU-beta [Prevotella buccae D17]
 gi|315607055|ref|ZP_07882059.1| DNA-binding protein HU-beta [Prevotella buccae ATCC 33574]
 gi|288336287|gb|EFC74670.1| DNA-binding protein HU-beta [Prevotella buccae D17]
 gi|315251109|gb|EFU31094.1| DNA-binding protein HU-beta [Prevotella buccae ATCC 33574]
          Length = 91

 Score = 40.8 bits (94), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 37/65 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    LS+ D+ + +    N I D+ V G+ I++  F TF V ++ +R G
Sbjct: 1  MNKSELIEKIAATAELSKADAKKALDATVNAIKDALVAGDKIQLVGFGTFAVSERPAREG 60

Query: 65 RNLQT 69
           N  T
Sbjct: 61 INPAT 65


>gi|116695179|ref|YP_840755.1| HU family DNA-binding protein [Ralstonia eutropha H16]
 gi|113529678|emb|CAJ96025.1| DNA-binding protein HU family [Ralstonia eutropha H16]
          Length = 93

 Score = 40.8 bits (94), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 44/86 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +I+ E  LS   + R +    + I  +  +G+++ +  F +F   ++ +R G
Sbjct: 1  MNKGELVSAIAAEAELSNAAAERALNAALDSIKKAVAKGDSVTLVGFGSFSAGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + +KI   + V F A    K
Sbjct: 61 RNPRTGETIKIPAAKTVKFSAGQGFK 86


>gi|15672862|ref|NP_267036.1| HU-like DNA-binding protein [Lactococcus lactis subsp. lactis
          Il1403]
 gi|12723810|gb|AAK04978.1|AE006322_6 HU-like DNA-binding protein [Lactococcus lactis subsp. lactis
          Il1403]
 gi|12830842|gb|AAK08215.1|AF320914_2 HllB [Lactococcus lactis]
 gi|326406426|gb|ADZ63497.1| DNA-binding protein HU-beta [Lactococcus lactis subsp. lactis
          CV56]
          Length = 115

 Score = 40.8 bits (94), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 18/85 (21%), Positives = 45/85 (52%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          ++ +L+  ++    LS+ ++ + +      I      G  + IS+F TF V+++ +RV  
Sbjct: 3  SKQELIDYVADRTELSKVNAAKAINAFVEAITYYISEGTPVHISNFGTFEVRKRAARVSH 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90
          ++ + +++ +  + + VF+A   LK
Sbjct: 63 DVHSREKILVGEQNIPVFRAGKALK 87


>gi|313185101|gb|ADR50115.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 40.8 bits (94), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 4   TITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-K 57
            +++SD+V  IS         L +K     +   F E+  +      I+  SF TF V K
Sbjct: 8   NLSKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRK 67

Query: 58  QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           +KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 68  RKGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104


>gi|212703101|ref|ZP_03311229.1| hypothetical protein DESPIG_01140 [Desulfovibrio piger ATCC
          29098]
 gi|212673367|gb|EEB33850.1| hypothetical protein DESPIG_01140 [Desulfovibrio piger ATCC
          29098]
          Length = 97

 Score = 40.8 bits (94), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 6/95 (6%)

Query: 5  ITRSDLVKSISK----EFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          +T+ DLV+++++      G  L + D    +  L +        G  + +        K 
Sbjct: 1  MTKEDLVRNVTERSRIHLGRSLCQADVEAVLQALKDVTAQELTAGGEVPLPGLGKLKTKD 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          + +R+GRN +T + V I  RRVVVF  S  L + I
Sbjct: 61 RAARMGRNPRTGEAVTIPARRVVVFAPSEKLDRDI 95


>gi|255322354|ref|ZP_05363500.1| DNA-binding protein HU 1 [Campylobacter showae RM3277]
 gi|255300727|gb|EET79998.1| DNA-binding protein HU 1 [Campylobacter showae RM3277]
          Length = 100

 Score = 40.8 bits (94), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 43/85 (50%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          ++D +++++ + GLS+KDS + V      I +    G++I    F TF   ++ +R  R 
Sbjct: 3  KADFIQAVADKAGLSKKDSLKVVDAALETIEEVLKNGDSISFIGFGTFATAERAARKARV 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKK 91
            T + + +   + V FK    LK+
Sbjct: 63 PGTTKVIDVPASKAVKFKVGKKLKE 87


>gi|227494793|ref|ZP_03925109.1| DNA-binding protein HU [Actinomyces coleocanis DSM 15436]
 gi|226831245|gb|EEH63628.1| DNA-binding protein HU [Actinomyces coleocanis DSM 15436]
          Length = 95

 Score = 40.8 bits (94), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 47/93 (50%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M  ++ R+ LV +I+ +  +++  +   +      + +S   GE +K++   +    ++ 
Sbjct: 1  MDMSVNRTQLVAAIADKANITKVQADAALVAFQEVLTESLAAGETVKVTGLFSVERVERA 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +R GRN QT ++++I     V   A S LKK +
Sbjct: 61 ARTGRNPQTGEQIQIPAGFGVKISAGSTLKKAV 93


>gi|332342355|gb|AEE55689.1| integration host factor, beta subunit IhfB [Escherichia coli
          UMNK88]
          Length = 94

 Score = 40.8 bits (94), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLATQQSHIPVKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V+++ + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89


>gi|303257527|ref|ZP_07343539.1| putative integration host factor subunit alpha (IHF-alpha)
           [Burkholderiales bacterium 1_1_47]
 gi|331000208|ref|ZP_08323892.1| DNA-binding protein HU [Parasutterella excrementihominis YIT 11859]
 gi|302859497|gb|EFL82576.1| putative integration host factor subunit alpha (IHF-alpha)
           [Burkholderiales bacterium 1_1_47]
 gi|329572374|gb|EGG54027.1| DNA-binding protein HU [Parasutterella excrementihominis YIT 11859]
          Length = 118

 Score = 40.8 bits (94), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 44/95 (46%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+ RS L + + +E G SR+ S  FVT  F  I D    GE +K+++   F +  +  ++
Sbjct: 21  TMNRSTLEEVLFEELGFSREMSRVFVTQFFQTISDVLATGEEVKLTTLGRFEICGRAYKM 80

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
             + +  +      R  V F  S  L   I  ++R
Sbjct: 81  FFDPEAKEWFDAPTRLDVYFHPSKKLTDFIDYNLR 115


>gi|194291893|ref|YP_002007800.1| DNA-binding protein hu-beta, ns1 (hu-1), plays a role in DNA
          replication and in rpo translation [Cupriavidus
          taiwanensis LMG 19424]
 gi|193225797|emb|CAQ71743.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Cupriavidus
          taiwanensis LMG 19424]
          Length = 93

 Score = 40.8 bits (94), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 44/86 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +I+ E  LS   + R +    + I  +  +G+++ +  F +F   ++ +R G
Sbjct: 1  MNKGELVSAIAAEAELSNAAAERALNAALDSIKKAVAKGDSVTLVGFGSFAAGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + +KI   + V F A    K
Sbjct: 61 RNPRTGETIKIPAAKTVKFSAGQGFK 86


>gi|297621554|ref|YP_003709691.1| Integration host factor subunit alpha (IHF- alpha) [Waddlia
          chondrophila WSU 86-1044]
 gi|297376855|gb|ADI38685.1| Integration host factor subunit alpha (IHF- alpha) [Waddlia
          chondrophila WSU 86-1044]
          Length = 110

 Score = 40.4 bits (93), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 38/79 (48%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+  L+ +IS++ G+   D    +    +++ D    GE ++   F  F V ++  ++
Sbjct: 9  TVTKKKLINAISQDKGIHPNDVRHVIQAFLDKMTDCLTNGERLEFRDFGVFEVVERKQKI 68

Query: 64 GRNLQTNQEVKIDPRRVVV 82
          GRN +      + P R  V
Sbjct: 69 GRNPKNASVPIVIPARPAV 87


>gi|269469081|gb|EEZ80634.1| histone family protein DNA-binding [uncultured SUP05 cluster
          bacterium]
          Length = 92

 Score = 40.4 bits (93), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 43/85 (50%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          ++DL+ S+S    LS+ D+   V  +   +      GE  +I  F  F+ K + +R+G N
Sbjct: 3  KTDLILSLSNNTDLSKTDAKVSVEVIIEALTKGIASGEGAEIRGFGGFYKKHRKARLGIN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKK 91
           +T++  ++  + V  FK    L++
Sbjct: 63 PKTSERTQVSEKFVPFFKPGKSLRE 87


>gi|126667926|ref|ZP_01738891.1| integration host factor subunit alpha [Marinobacter sp. ELB17]
 gi|126627586|gb|EAZ98218.1| integration host factor subunit alpha [Marinobacter sp. ELB17]
          Length = 85

 Score = 40.4 bits (93), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQE 72
          S+  E GL+++++   V   F+EI  +  + E +K+S F  F ++ K  R G+ L+   E
Sbjct: 19 SLYDELGLNKREAKEIVGAFFDEIRGALSQNEQVKLSGFGNFDLRDKKERPGQKLKAKVE 78

Query: 73 VKI 75
            +
Sbjct: 79 AYV 81


>gi|186474390|ref|YP_001863361.1| histone family protein DNA-binding protein [Burkholderia phymatum
          STM815]
 gi|184198349|gb|ACC76311.1| histone family protein DNA-binding protein [Burkholderia phymatum
          STM815]
          Length = 92

 Score = 40.4 bits (93), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 18/86 (20%), Positives = 39/86 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++   G S+  +   +  +   +  +  RGE +++  F +F    +  R G
Sbjct: 1  MNKQELIDAVAATTGESKASTGETIDAIIETVTAAVTRGETVQLVGFGSFSTGARAERSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN  T + + I   + V F A    K
Sbjct: 61 RNPSTGETITIPAAKTVKFSAGKAFK 86


>gi|82703454|ref|YP_413020.1| histone-like DNA-binding protein [Nitrosospira multiformis ATCC
          25196]
 gi|82411519|gb|ABB75628.1| bacterial nucleoid protein Hbs [Nitrosospira multiformis ATCC
          25196]
          Length = 90

 Score = 40.4 bits (93), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+K   +S+  +   +      I  +  +G+++ +  F TF V  + +R G
Sbjct: 1  MNKAELIDAIAKSSDISKASAGNALDGALEAIKAALKKGQSVTLVGFGTFKVGTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   + I+  +V  F A   LK  +
Sbjct: 61 RNPRTGAAITIESTKVPKFIAGKALKDAV 89


>gi|114562616|ref|YP_750129.1| histone family protein DNA-binding protein [Shewanella
          frigidimarina NCIMB 400]
 gi|114333909|gb|ABI71291.1| histone family protein DNA-binding protein [Shewanella
          frigidimarina NCIMB 400]
          Length = 91

 Score = 40.4 bits (93), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 42/89 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  L ++++ +  + +  + + +  +   I      GE I I  F TF ++    +VG
Sbjct: 1  MNKKQLAQTMASKMDIPQVQAKQQLEQILAVIHQGLAEGEKIYIPQFGTFELRFYLPKVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++ID      FK S  LK  I
Sbjct: 61 RNPQTGEAIEIDGFNQPSFKVSPALKALI 89


>gi|134094955|ref|YP_001100030.1| DNA-binding protein HU-beta [Herminiimonas arsenicoxydans]
 gi|133738858|emb|CAL61905.1| DNA-binding protein HU-beta (NS1) (HU-1) [Herminiimonas
          arsenicoxydans]
          Length = 90

 Score = 40.4 bits (93), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 44/86 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+    +S+  +TR +  +   +  +  +   + +  F TF V ++ +R G
Sbjct: 1  MNKTELIDHIAGSADISKAAATRALDAVIVAVKTTLKKNGTVTLVGFGTFSVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + +KI   +V  FK    LK
Sbjct: 61 RNPRTGEAIKIKAAKVPKFKPGKALK 86


>gi|237741958|ref|ZP_04572439.1| DNA-binding protein HU [Fusobacterium sp. 4_1_13]
 gi|256845298|ref|ZP_05550756.1| integration host factor, beta subunit [Fusobacterium sp.
          3_1_36A2]
 gi|294785402|ref|ZP_06750690.1| DNA-binding protein HU [Fusobacterium sp. 3_1_27]
 gi|229429606|gb|EEO39818.1| DNA-binding protein HU [Fusobacterium sp. 4_1_13]
 gi|256718857|gb|EEU32412.1| integration host factor, beta subunit [Fusobacterium sp.
          3_1_36A2]
 gi|294487116|gb|EFG34478.1| DNA-binding protein HU [Fusobacterium sp. 3_1_27]
          Length = 102

 Score = 40.4 bits (93), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 17/67 (25%), Positives = 38/67 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V + +++  L  KDS R V      + D+ ++G+ ++   F ++ VK++ +R  
Sbjct: 1  MTKKEFVNAFAEKGELKIKDSERLVNAFLETVEDALLKGDGVRFIGFGSWEVKERSAREV 60

Query: 65 RNLQTNQ 71
          +N QT +
Sbjct: 61 KNPQTGK 67


>gi|300716083|ref|YP_003740886.1| Integration host factor beta-subunit (IHF-beta) [Erwinia
          billingiae Eb661]
 gi|299061919|emb|CAX59035.1| Integration host factor beta-subunit (IHF-beta) [Erwinia
          billingiae Eb661]
          Length = 94

 Score = 40.4 bits (93), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ +   +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLAGQHSHIPAKVVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V+++ + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89


>gi|291287622|ref|YP_003504438.1| histone family protein DNA-binding protein [Denitrovibrio
          acetiphilus DSM 12809]
 gi|290884782|gb|ADD68482.1| histone family protein DNA-binding protein [Denitrovibrio
          acetiphilus DSM 12809]
          Length = 90

 Score = 40.4 bits (93), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRV 63
          + + +L++ I++  GL + D+ + +   F +   +A++ +  + +  F TF V ++  R 
Sbjct: 1  MNKKELIEKIAEMAGLKKSDAEKALKA-FEDATVAALKADDKVTLVGFGTFSVSERKERK 59

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QT  E+ I  ++V  F    + K  I
Sbjct: 60 GRNPQTGAEMTIPAKKVPKFTPGKLFKDSI 89


>gi|154490934|ref|ZP_02030875.1| hypothetical protein PARMER_00851 [Parabacteroides merdae ATCC
          43184]
 gi|154088682|gb|EDN87726.1| hypothetical protein PARMER_00851 [Parabacteroides merdae ATCC
          43184]
          Length = 90

 Score = 40.4 bits (93), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 42/82 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  ISK  G+ ++     V +  + +  S  +GE + +  F +F +K++  +  
Sbjct: 1  MTKADIVSEISKSTGIDKQTVLNSVESFMDIVKSSLSQGENVYLRGFGSFVIKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTIIIPEHNIPSFKPA 82


>gi|218548428|ref|YP_002382219.1| integration host factor subunit beta [Escherichia fergusonii ATCC
          35469]
 gi|226709795|sp|B7LN74|IHFB_ESCF3 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|218355969|emb|CAQ88585.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia fergusonii ATCC 35469]
 gi|324113757|gb|EGC07732.1| integration host protein [Escherichia fergusonii B253]
 gi|325496851|gb|EGC94710.1| integration host factor subunit beta [Escherichia fergusonii
          ECD227]
          Length = 94

 Score = 40.4 bits (93), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLATQQSHIPAKVVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V+++ + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89


>gi|271969217|ref|YP_003343413.1| histone-like DNA-binding protein [Streptosporangium roseum DSM
           43021]
 gi|270512392|gb|ACZ90670.1| histone-like DNA-binding protein [Streptosporangium roseum DSM
           43021]
          Length = 99

 Score = 40.4 bits (93), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 3/100 (3%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + + +LV +I+   G  +K +T  V  + + I  +   G+ + I+ F  F +  K +R  
Sbjct: 1   MNKKELVDAIADRVG-DKKTATEAVNAVLDAIQKAVASGDKVSITGFGAFEMVHKPARTA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           RN  T  E+K+       F+  S  K+ +  ++ G+K  K
Sbjct: 60  RNPSTGAEIKVAESWGPKFRPGSDFKELV--NVEGKKAAK 97


>gi|325856433|ref|ZP_08172149.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A]
 gi|327312503|ref|YP_004327940.1| DNA-binding protein HU [Prevotella denticola F0289]
 gi|325483617|gb|EGC86589.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A]
 gi|326945422|gb|AEA21307.1| DNA-binding protein HU [Prevotella denticola F0289]
          Length = 92

 Score = 40.4 bits (93), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63
          +T++D++  I+   G+++KD +  V +    I  S + + E + +  F +F VK +  + 
Sbjct: 1  MTKADIINEIATSTGIAKKDVSAVVESFMEAIKGSLLEKKENVYLRGFGSFIVKHRAEKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           RN+  N  + I       FK +    K  ++DM+
Sbjct: 61 ARNISKNTTITIPAHNFPSFKPA----KTFIEDMK 91


>gi|313202747|ref|YP_004041404.1| histone family protein DNA-binding protein [Paludibacter
          propionicigenes WB4]
 gi|312442063|gb|ADQ78419.1| histone family protein DNA-binding protein [Paludibacter
          propionicigenes WB4]
          Length = 90

 Score = 40.4 bits (93), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 39/82 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +      V      + DS  + E + +  F +F +KQ+  +  
Sbjct: 1  MTKADIVNEIAKNTGIDKVTVLTTVEAFMETVKDSLSKNENVYLRGFGSFVIKQRAEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTIIIPAHNIPSFKPA 82


>gi|261414759|ref|YP_003248442.1| histone family protein DNA-binding protein [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371215|gb|ACX73960.1| histone family protein DNA-binding protein [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302327271|gb|ADL26472.1| DNA-binding protein HU [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 116

 Score = 40.4 bits (93), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 3/105 (2%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           IT+ ++V  I+ + G ++  +   V  L + I +  + G  I++  F  F  KQ+  R  
Sbjct: 8   ITKKEIVDEIASQTGFTQVKTKVIVEELIDAISNCVIEGNNIELRGFGRFKNKQRKERRT 67

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMD---DMRGRKCNKDD 106
           RN +T + V I  +   VF+ S  L ++I +   D+      KDD
Sbjct: 68  RNPKTGELVNIPAKVRPVFEPSKDLIEKINNVPFDLEEAFVPKDD 112


>gi|114566192|ref|YP_753346.1| non-specific DNA-binding protein HBsu [Syntrophomonas wolfei
          subsp. wolfei str. Goettingen]
 gi|114337127|gb|ABI67975.1| bacterial nucleoid protein Hbs [Syntrophomonas wolfei subsp.
          wolfei str. Goettingen]
          Length = 110

 Score = 40.4 bits (93), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 46/85 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LVKS++++  +++KD+ + +  L   I  +   G+ ++I  F +F V+ +  R  
Sbjct: 1  MNKSELVKSLAEKAEITQKDAAKVLDALVESIQQALAGGDKVQIIGFGSFEVRDRKERKV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           +  T +E+ +   +V  FK    L
Sbjct: 61 ISPATGKEITVPATKVPAFKPGKSL 85


>gi|115372447|ref|ZP_01459756.1| non-specific DNA-binding protein [Stigmatella aurantiaca DW4/3-1]
 gi|310819508|ref|YP_003951866.1| DNA-binding protein HU [Stigmatella aurantiaca DW4/3-1]
 gi|115370660|gb|EAU69586.1| non-specific DNA-binding protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392580|gb|ADO70039.1| DNA-binding protein HU [Stigmatella aurantiaca DW4/3-1]
          Length = 89

 Score = 40.4 bits (93), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV+ ++ +  L++K +   +  +F+ I  +  R        F T+ V+ + +R  
Sbjct: 1  MTKAELVEVVAAQSRLTKKSAAEILDIVFSNIGKAVKRDARFSYPGFGTWSVRSRKARKI 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QTN+ +K+   + + F+ +  LK
Sbjct: 61 RNPQTNEMMKLKASKTIGFRPAKELK 86


>gi|325270174|ref|ZP_08136781.1| DNA-binding protein HU [Prevotella multiformis DSM 16608]
 gi|324987475|gb|EGC19451.1| DNA-binding protein HU [Prevotella multiformis DSM 16608]
          Length = 92

 Score = 40.4 bits (93), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63
          +T++D++  I+   G+++KD +  V +    I  S + + E + +  F +F VK +  + 
Sbjct: 1  MTKADIINEIATSTGIAKKDVSAVVESFMEAIKGSLLEKKENVYLRGFGSFIVKHRAEKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           RN+  N  + I       FK + +     ++DM+
Sbjct: 61 ARNISKNTTITIPAHNFPSFKPAKVF----IEDMK 91


>gi|254303147|ref|ZP_04970505.1| possible nucleoid DNA-binding protein [Fusobacterium nucleatum
          subsp. polymorphum ATCC 10953]
 gi|148323339|gb|EDK88589.1| possible nucleoid DNA-binding protein [Fusobacterium nucleatum
          subsp. polymorphum ATCC 10953]
          Length = 102

 Score = 40.4 bits (93), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 17/67 (25%), Positives = 38/67 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V + +++  L  KDS R V      + D+ ++G+ ++   F ++ VK++ +R  
Sbjct: 1  MTKKEFVNAFAEKGELKIKDSERLVNAFLETVEDALLKGDGVRFIGFGSWEVKERSAREV 60

Query: 65 RNLQTNQ 71
          +N QT +
Sbjct: 61 KNPQTGK 67


>gi|307825166|ref|ZP_07655387.1| histone family protein DNA-binding protein [Methylobacter
          tundripaludum SV96]
 gi|307733914|gb|EFO04770.1| histone family protein DNA-binding protein [Methylobacter
          tundripaludum SV96]
          Length = 103

 Score = 40.4 bits (93), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S L+  ++K++  L RK+    V  +  ++  + +  + I+I  F +F +       
Sbjct: 1  MTKSKLIDLLAKKWPHLERKEVELAVGCMIEQMSKALMANDRIEIRGFGSFSLHYHPPFT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  E+K+  R    FK    L++R+
Sbjct: 61 GRNPRTGAELKLQARYSPYFKPGRELRQRV 90


>gi|297202603|ref|ZP_06920000.1| DNA-binding protein HU 2 [Streptomyces sviceus ATCC 29083]
 gi|197709867|gb|EDY53901.1| DNA-binding protein HU 2 [Streptomyces sviceus ATCC 29083]
          Length = 215

 Score = 40.4 bits (93), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 7/112 (6%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1   MNKAQLVEAIADKVG-GRQQAADAVDAVLDAIVRATVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT---SPSGS 113
           RN QT + V++    V  F+A    K  +      +K  K+DV    +P GS
Sbjct: 60  RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGT---KKLPKNDVAVKKAPKGS 108


>gi|302554387|ref|ZP_07306729.1| histone protein DNA-binding protein [Streptomyces
          viridochromogenes DSM 40736]
 gi|302472005|gb|EFL35098.1| histone protein DNA-binding protein [Streptomyces
          viridochromogenes DSM 40736]
          Length = 214

 Score = 40.4 bits (93), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV++I+ + G  R+ +   V  + + I  S V GE + ++ F +F    + +R  
Sbjct: 1  MNKAQLVEAIADKMG-GRQQAADAVDHVLDAIVRSVVSGERVSVTGFGSFEKVDRPARYA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + V++    V  F+A    K
Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85


>gi|239930957|ref|ZP_04687910.1| DNA-binding protein HU (hs1) [Streptomyces ghanaensis ATCC 14672]
 gi|291439334|ref|ZP_06578724.1| HSl protein [Streptomyces ghanaensis ATCC 14672]
 gi|291342229|gb|EFE69185.1| HSl protein [Streptomyces ghanaensis ATCC 14672]
          Length = 93

 Score = 40.4 bits (93), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV +++    ++RKD+   +      + D   +G E + +  F TF    + +R 
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDIVSKGDEKVTVPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN QT + ++I     V   A S LK+
Sbjct: 61 ARNPQTGEPIQIPAGYSVKVSAGSKLKE 88


>gi|58979381|gb|AAW83355.1| DNA-binding protein HU [Campylobacter jejuni]
          Length = 98

 Score = 40.4 bits (93), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+T     + + I D   +G++I    F TF  +++ +R  
Sbjct: 1  MTKADFISLVAQTAGLTKKDATTTTDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R   T + +K+   RV  FK    LK+ +
Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNLKEAV 89


>gi|53802893|ref|YP_115338.1| prophage MuMc02, DNA-binding protein HU [Methylococcus capsulatus
          str. Bath]
 gi|53756654|gb|AAU90945.1| prophage MuMc02, DNA-binding protein HU [Methylococcus capsulatus
          str. Bath]
          Length = 95

 Score = 40.4 bits (93), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 5  ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + +S L+ +I ++    L++    R +  L N   ++   G+ + I   A   VK++ +R
Sbjct: 1  MNQSQLINAIHEDANGSLTKTVIQRVLIALANVAQEALANGDEVTIPGVAKLTVKERAAR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN QT + V+I  +RV        LK+R+
Sbjct: 61 TGRNPQTGETVEIPAKRVARASFVKALKERV 91


>gi|42524742|ref|NP_970122.1| putative DNA-binding protein HU-beta [Bdellovibrio bacteriovorus
          HD100]
 gi|39576952|emb|CAE78181.1| putative DNA-binding protein HU-beta [Bdellovibrio bacteriovorus
          HD100]
          Length = 90

 Score = 40.4 bits (93), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 43/86 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L++ I+ E  +S+  +   +      I  S  +G+ +K+  F TF   ++ +R G
Sbjct: 1  MNKAQLIEKIATETKVSKAQAEAILDCAVENIKKSVKKGDDVKLVGFGTFTKAKRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + +KI       F+A +  K
Sbjct: 61 RNPQTGKAIKIPAAWAPKFRAGAEFK 86


>gi|329298227|ref|ZP_08255563.1| integration host factor subunit beta [Plautia stali symbiont]
          Length = 94

 Score = 40.4 bits (93), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ +   +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLAGQHTHIPAKVVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V+++ + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89


>gi|313185029|gb|ADR50079.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 40.4 bits (93), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           IT+SD+V  IS         L +K     +   F E+  +      I+  SF TF V K+
Sbjct: 9   ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG    RN QT + VK     V  F+    LK+R+ 
Sbjct: 69  KGRLNARNPQTGEYVKGLDHHVAYFRPGKDLKERVW 104


>gi|330996516|ref|ZP_08320398.1| DNA-binding protein HU-beta [Paraprevotella xylaniphila YIT
          11841]
 gi|329573072|gb|EGG54691.1| DNA-binding protein HU-beta [Paraprevotella xylaniphila YIT
          11841]
          Length = 107

 Score = 40.4 bits (93), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 16/69 (23%), Positives = 42/69 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I++  GL++ D+ + +    + I ++  +G+ I +  F TF V ++ +R G
Sbjct: 18 MNKTELINAIAENAGLNKTDAKKALDATISAISEALKKGDKIALVGFGTFSVSERPARTG 77

Query: 65 RNLQTNQEV 73
           N +T +++
Sbjct: 78 INPRTKEQI 86


>gi|254392478|ref|ZP_05007658.1| DNA-binding protein HU [Streptomyces clavuligerus ATCC 27064]
 gi|294815333|ref|ZP_06773976.1| Histone protein DNA-binding protein [Streptomyces clavuligerus
          ATCC 27064]
 gi|326443687|ref|ZP_08218421.1| histone-like DNA binding protein [Streptomyces clavuligerus ATCC
          27064]
 gi|197706145|gb|EDY51957.1| DNA-binding protein HU [Streptomyces clavuligerus ATCC 27064]
 gi|294327932|gb|EFG09575.1| Histone protein DNA-binding protein [Streptomyces clavuligerus
          ATCC 27064]
          Length = 222

 Score = 40.4 bits (93), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV++I+ + G  R+ +   V ++ + I  + V G+ + ++ F +F   ++ +R  
Sbjct: 1  MNKAQLVEAIADKLG-GRQQAADAVDSVLDAIVRAVVAGDRVSVTGFGSFEKVERPARYA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + V++    V  F+A    K
Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85


>gi|258512944|ref|YP_003189201.1| histone-like DNA-binding protein HU [Acetobacter pasteurianus IFO
          3283-01]
 gi|256634847|dbj|BAI00822.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-01]
 gi|256637902|dbj|BAI03870.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-03]
 gi|256640956|dbj|BAI06917.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-07]
 gi|256644011|dbj|BAI09965.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-22]
 gi|256647066|dbj|BAI13013.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-26]
 gi|256650119|dbj|BAI16059.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-32]
 gi|256653110|dbj|BAI19043.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-01-42C]
 gi|256656163|dbj|BAI22089.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-12]
          Length = 92

 Score = 40.4 bits (93), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DL++ I     +S+KD+   + T+F  I ++A  G+   I  F  F V+Q   R GRN  
Sbjct: 5  DLIERIVATTDISKKDAKTALDTVFAAIIEAAAEGDDTAIPGFGKFVVRQTSERKGRNPH 64

Query: 69 TNQEVKIDPRRVVVFKASSILK 90
          T  E+ I   R + F  +  +K
Sbjct: 65 TGAELVIPASRKLAFTPAKAVK 86


>gi|238763340|ref|ZP_04624304.1| Integration host factor subunit beta [Yersinia kristensenii ATCC
          33638]
 gi|238698439|gb|EEP91192.1| Integration host factor subunit beta [Yersinia kristensenii ATCC
          33638]
          Length = 69

 Score = 40.4 bits (93), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          +   +  +   GE I+I  F +F +  +  RVGRN +T  +V+++ + V  FK    L+ 
Sbjct: 4  MLEHMAGTLAEGERIEIRGFGSFSLHYRAPRVGRNPKTGDKVELEGKYVPHFKPGKELRD 63

Query: 92 R 92
          R
Sbjct: 64 R 64


>gi|237740736|ref|ZP_04571217.1| DNA-binding protein HU [Fusobacterium sp. 2_1_31]
 gi|229422753|gb|EEO37800.1| DNA-binding protein HU [Fusobacterium sp. 2_1_31]
          Length = 102

 Score = 40.4 bits (93), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 36/65 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V + +K+  L  KDS R V      + ++ ++GE ++   F ++ VK++ +R  
Sbjct: 1  MTKKEFVDAFAKKGELKIKDSERLVAAFLETVEEALLKGEGVRFIGFGSWEVKERAAREV 60

Query: 65 RNLQT 69
           N QT
Sbjct: 61 TNPQT 65


>gi|294631600|ref|ZP_06710160.1| DNA-binding protein HU [Streptomyces sp. e14]
 gi|292834933|gb|EFF93282.1| DNA-binding protein HU [Streptomyces sp. e14]
          Length = 212

 Score = 40.0 bits (92), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 7/112 (6%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1   MNKAQLVEAIADKMG-GRQQAADAVDAVLDAIVRAVVGGDRVSVTGFGSFEKVDRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT---SPSGS 113
           RN QT + V++    V  F+A    K  +      +K  K+D+    +P GS
Sbjct: 60  RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGS---KKLPKNDIAVKKAPKGS 108


>gi|209552051|ref|YP_002283967.1| histone family protein DNA-binding protein [Rhizobium
          leguminosarum bv. trifolii WSM2304]
 gi|209539644|gb|ACI59575.1| histone family protein DNA-binding protein [Rhizobium
          leguminosarum bv. trifolii WSM2304]
          Length = 92

 Score = 40.0 bits (92), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 37/85 (43%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +D+   I+ E  L++      V  +   I ++AV G    +  F  F VK+   R  R
Sbjct: 3  TTNDIADKIATEHSLTKTQGKAIVEAVIASITEAAVAGNETSLPGFGKFKVKETPERDAR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90
          N  T   +K+   + + F  +  LK
Sbjct: 63 NPATGATIKVAAAKKLAFTPAKALK 87


>gi|239944579|ref|ZP_04696516.1| putative histone-like DNA-binding protein [Streptomyces roseosporus
           NRRL 15998]
 gi|239991041|ref|ZP_04711705.1| putative histone-like DNA-binding protein [Streptomyces roseosporus
           NRRL 11379]
 gi|291448042|ref|ZP_06587432.1| DNA-binding protein HU 2 [Streptomyces roseosporus NRRL 15998]
 gi|291350989|gb|EFE77893.1| DNA-binding protein HU 2 [Streptomyces roseosporus NRRL 15998]
          Length = 217

 Score = 40.0 bits (92), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 7/112 (6%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1   MNKAQLVEAIADKVG-GRQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT---SPSGS 113
           RN QT + V++    V  F+A    K  +      +K  K+DV    +P GS
Sbjct: 60  RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGS---KKLPKNDVAVKKAPKGS 108


>gi|57242219|ref|ZP_00370158.1| hup protein [Campylobacter upsaliensis RM3195]
 gi|57016899|gb|EAL53681.1| hup protein [Campylobacter upsaliensis RM3195]
 gi|58979437|gb|AAW83383.1| DNA-binding protein HU [Campylobacter upsaliensis]
          Length = 98

 Score = 40.0 bits (92), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 19/80 (23%), Positives = 41/80 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++   L++KD+      + + I +   +G++I    F TF   ++ +R  
Sbjct: 1  MTKADFISQVAQNAELTKKDAGAATDAVISTITEVLAKGDSISFIGFGTFSTTERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFK 84
          R   T + +K+   RV  FK
Sbjct: 61 RVPSTGKTIKVPATRVAKFK 80


>gi|253572936|ref|ZP_04850333.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251837463|gb|EES65557.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 92

 Score = 40.0 bits (92), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+K ++++     K+    + + F E+  + +R + + I  F TF    + +R+ 
Sbjct: 3  MNKTDLIKMVAEKANKPTKEVAEIIDSFFKELSQN-LREKDVSIKDFGTFKKIIQPARIA 61

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN  T + V++  + VV FK S
Sbjct: 62 RNPATGEPVEVPEKEVVKFKPS 83


>gi|309808912|ref|ZP_07702790.1| DNA-binding protein HU-beta [Lactobacillus iners LactinV 01V1-a]
 gi|308167842|gb|EFO69982.1| DNA-binding protein HU-beta [Lactobacillus iners LactinV 01V1-a]
          Length = 47

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 50 SFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           F TF V+++ +R GRN QT  E++I   +V  FK    LK+ +
Sbjct: 3  GFGTFEVRERAARKGRNPQTGAEIEIPASKVPAFKPGKALKEAV 46


>gi|288986945|ref|YP_003456908.1| integration host factor, beta subunit [Allochromatium vinosum DSM
          180]
 gi|288898324|gb|ADC64158.1| integration host factor, beta subunit [Allochromatium vinosum DSM
          180]
          Length = 95

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRS+L+  ++ ++  L   D    V  L N + +S   GE I++  F +F +  +  R 
Sbjct: 1  MTRSELITQMANRQEHLPEADVEVVVKALLNLLRESLANGERIEVRGFGSFSLHYRPPRQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T + V    +  + FK    L++R+
Sbjct: 61 ARNPKTGETVFTAGKHYLHFKPGKELRERV 90


>gi|239928724|ref|ZP_04685677.1| histone-like DNA binding protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291437048|ref|ZP_06576438.1| DNA-binding protein HU 2 [Streptomyces ghanaensis ATCC 14672]
 gi|291339943|gb|EFE66899.1| DNA-binding protein HU 2 [Streptomyces ghanaensis ATCC 14672]
          Length = 212

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 7/112 (6%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1   MNKAQLVEAIADKMG-GRQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT---SPSGS 113
           RN QT + V++    V  F+A    K  +      +K  K+D+    +P GS
Sbjct: 60  RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGS---KKLPKNDIAVKKAPKGS 108


>gi|89145728|gb|ABD62053.1| Hbb [Borrelia californiensis]
 gi|89145730|gb|ABD62054.1| Hbb [Borrelia californiensis]
 gi|89145732|gb|ABD62055.1| Hbb [Borrelia californiensis]
          Length = 108

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           +T+SD+V  IS         L +K     +   F E+  +      ++  SF TF V K+
Sbjct: 9   VTKSDIVDQISLNIRNSNLKLEKKYIRLVIDAFFEELKSNLCSNNVVEFRSFGTFEVRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG    RN QT + V++    V  F+    LK+R+ 
Sbjct: 69  KGRLNARNPQTGEYVRVLDHHVAYFRPGKDLKERVW 104


>gi|189464081|ref|ZP_03012866.1| hypothetical protein BACINT_00416 [Bacteroides intestinalis DSM
          17393]
 gi|198275171|ref|ZP_03207702.1| hypothetical protein BACPLE_01329 [Bacteroides plebeius DSM
          17135]
 gi|255010947|ref|ZP_05283073.1| putative HU-like DNA binding protein [Bacteroides fragilis
          3_1_12]
 gi|298482410|ref|ZP_07000596.1| DNA-binding protein HU [Bacteroides sp. D22]
 gi|313148752|ref|ZP_07810945.1| predicted protein [Bacteroides fragilis 3_1_12]
 gi|317477426|ref|ZP_07936654.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
 gi|189438415|gb|EDV07400.1| hypothetical protein BACINT_00416 [Bacteroides intestinalis DSM
          17393]
 gi|198271991|gb|EDY96261.1| hypothetical protein BACPLE_01329 [Bacteroides plebeius DSM
          17135]
 gi|298271389|gb|EFI12964.1| DNA-binding protein HU [Bacteroides sp. D22]
 gi|313137519|gb|EFR54879.1| predicted protein [Bacteroides fragilis 3_1_12]
 gi|316906408|gb|EFV28134.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 92

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+K ++++     K+    + + F E+  + +R + + I  F TF    + +R+ 
Sbjct: 3  MNKTDLIKMVAEKANKPTKEVAEIIDSFFKELSQN-LREKDVSIKDFGTFKKIIQPARIA 61

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN  T + V++  + VV FK S
Sbjct: 62 RNPATGEPVEVPEKEVVKFKPS 83


>gi|312977270|ref|ZP_07789018.1| DNA-binding protein HU [Lactobacillus crispatus CTV-05]
 gi|310895701|gb|EFQ44767.1| DNA-binding protein HU [Lactobacillus crispatus CTV-05]
          Length = 59

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 38 DSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          ++  +G  +++  F TF V+ + +R GRN QT  E++I    V  FK    LK
Sbjct: 3  ENLAKGFKVQLIGFGTFEVRHRAARKGRNPQTGDEIEIPASEVPAFKPGKALK 55


>gi|304382113|ref|ZP_07364624.1| DNA-binding protein HU [Prevotella marshii DSM 16973]
 gi|304336711|gb|EFM02936.1| DNA-binding protein HU [Prevotella marshii DSM 16973]
          Length = 99

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63
           +T++D++  I+   GL +KD +  V      I  S + + E + +  F +F VK +  + 
Sbjct: 1   MTKADIINEIAATTGLPKKDVSTTVEAFMETIKQSLLDKRENVYLRGFGSFIVKHRAEKT 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
            RN+  N  + I       FK +    K  +  M+G +  ++D
Sbjct: 61  ARNISKNTTITIAAHDFPGFKPA----KSFIQKMKGEEITEND 99


>gi|162148812|ref|YP_001603273.1| DNA-binding protein HU [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545440|ref|YP_002277669.1| histone family protein DNA-binding protein [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|161787389|emb|CAP56984.1| DNA-binding protein HU [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533117|gb|ACI53054.1| histone family protein DNA-binding protein [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 94

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 46/93 (49%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M K + + +LV +++ +  L +  +   V  +F+ I  +  + + +++  F TF    + 
Sbjct: 1  MEKPLNKQELVAAVADDADLPKAKAGEVVDAVFSAIEKALSKKQEVRLVGFGTFVTATRK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +  GRN +T +E+ I     V FK    LK+ +
Sbjct: 61 AAKGRNPRTGEEIDIPASTSVRFKPGKNLKEAV 93


>gi|332288797|ref|YP_004419649.1| integration host factor protein subunit beta [Gallibacterium
          anatis UMN179]
 gi|330431693|gb|AEC16752.1| integration host factor protein subunit beta [Gallibacterium
          anatis UMN179]
          Length = 93

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ K I++   +S K     V  +   +  +  +G+ I+I  F +F ++ +  R 
Sbjct: 1  MTKSELIEKLINRHPTMSIKHIEFSVKEIIEHLSLTLEKGDRIEIRRFGSFALRYRQPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  +V ++ + V  FKA   L++R+
Sbjct: 61 GRNPKTGTQVSLEAKSVPHFKAGKELRERV 90


>gi|288800481|ref|ZP_06405939.1| DNA-binding protein HU-beta [Prevotella sp. oral taxon 299 str.
          F0039]
 gi|288332694|gb|EFC71174.1| DNA-binding protein HU-beta [Prevotella sp. oral taxon 299 str.
          F0039]
          Length = 90

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+    LS+  + + +      I  + V G+ +++  F TF V ++ +R G
Sbjct: 1  MNKTELIERIAAGSDLSKAAAKKALDATTEAIKAALVAGDKVQLVGFGTFSVNERPARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T Q++ I  ++V  FKA + L   I
Sbjct: 61 INPATKQKINIPAKKVAKFKAGAELNDAI 89


>gi|311114526|ref|YP_003985747.1| DNA-binding protein HU [Gardnerella vaginalis ATCC 14019]
 gi|310946020|gb|ADP38724.1| DNA-binding protein HU [Gardnerella vaginalis ATCC 14019]
          Length = 105

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 45/89 (50%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
           +SDLV  I+++  L++  +   V    +   ++   GE +K++   +    ++  R GRN
Sbjct: 17  KSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEALQSGEGLKLTGLFSAERVKRAERTGRN 76

Query: 67  LQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            +T + +KI     V   A S+LKK + +
Sbjct: 77  PRTGETIKIPASYGVRISAGSLLKKAVTE 105


>gi|218261480|ref|ZP_03476291.1| hypothetical protein PRABACTJOHN_01957 [Parabacteroides johnsonii
          DSM 18315]
 gi|218223998|gb|EEC96648.1| hypothetical protein PRABACTJOHN_01957 [Parabacteroides johnsonii
          DSM 18315]
          Length = 90

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 42/82 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  ISK  G+ ++     V +  + +  S  +GE + +  F +F +K++  +  
Sbjct: 1  MTKADIVSEISKSTGIDKQTVLSSVESFMDIVKSSLSQGENVYLRGFGSFVIKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTIIIPEHNIPSFKPA 82


>gi|110639133|ref|YP_679342.1| DNA-binding protein HU-beta [Cytophaga hutchinsonii ATCC 33406]
 gi|110281814|gb|ABG60000.1| DNA-binding protein HU-beta [Cytophaga hutchinsonii ATCC 33406]
          Length = 90

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 36/65 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+ E  L++ DS R +    N    +  +GE++ +  F +F    + +R G
Sbjct: 1  MNKAELIDAIAAESKLTKADSKRALDAFLNATGKALKKGESVVLIGFGSFKTATRAARNG 60

Query: 65 RNLQT 69
          RN QT
Sbjct: 61 RNPQT 65


>gi|254885106|ref|ZP_05257816.1| DNA binding protein HU [Bacteroides sp. 4_3_47FAA]
 gi|254837899|gb|EET18208.1| DNA binding protein HU [Bacteroides sp. 4_3_47FAA]
          Length = 90

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+K ++++     K+    + + F E+  + +R + + I  F TF    + +R+ 
Sbjct: 1  MNKTDLIKMVAEKANKPTKEVAEIIDSFFKELSQN-LREKDVSIKDFGTFKKIIQPARIA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN  T + V++  + VV FK S
Sbjct: 60 RNPATGEPVEVPEKEVVKFKPS 81


>gi|319779504|ref|YP_004130417.1| DNA-binding protein HU-beta [Taylorella equigenitalis MCE9]
 gi|317109528|gb|ADU92274.1| DNA-binding protein HU-beta [Taylorella equigenitalis MCE9]
          Length = 93

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+++  LS+  + R +      I  S  +G+ + +  F TF V  + +R G
Sbjct: 1  MNKTELIEKIAEKTDLSKAAAGRALDATIEAIKASMKKGQPVTLVGFGTFRVNVRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + ++I   +V  F     LK
Sbjct: 61 RNPRTKEVIQIKKAKVPKFVPGKALK 86


>gi|238749769|ref|ZP_04611274.1| Integration host factor subunit beta [Yersinia rohdei ATCC 43380]
 gi|238712424|gb|EEQ04637.1| Integration host factor subunit beta [Yersinia rohdei ATCC 43380]
          Length = 69

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          +   +  +   GE I+I  F +F +  +  RVGRN +T  +V+++ + V  FK    L+ 
Sbjct: 4  MLEHMAGTLAEGERIEIRGFGSFSLHYRAPRVGRNPKTGTKVELEGKYVPHFKPGKELRD 63

Query: 92 R 92
          R
Sbjct: 64 R 64


>gi|238795852|ref|ZP_04639365.1| Integration host factor subunit beta [Yersinia mollaretii ATCC
          43969]
 gi|238720315|gb|EEQ12118.1| Integration host factor subunit beta [Yersinia mollaretii ATCC
          43969]
          Length = 69

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          +   +  +   GE I+I  F +F +  +  RVGRN +T  +V+++ + V  FK    L+ 
Sbjct: 4  MLEHMAGTLAEGERIEIRGFGSFSLHYRAPRVGRNPKTGAKVELEGKYVPHFKPGKELRD 63

Query: 92 R 92
          R
Sbjct: 64 R 64


>gi|60650162|ref|YP_209715.1| putative HU-like DNA binding protein [Bacteroides fragilis NCTC
          9343]
 gi|60495242|emb|CAH05736.1| putative HU-like DNA binding protein [Bacteroides fragilis NCTC
          9343]
          Length = 90

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+K ++++     K+    + + F E+  + +R + + I  F TF    + +R+ 
Sbjct: 1  MNKTDLIKMVAEKANKPTKEVAEIIDSFFKELSQN-LREKDVSIKDFGTFKKIIQPARIA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN  T + V++  + VV FK S
Sbjct: 60 RNPATGEPVEVPEKEVVKFKPS 81


>gi|282858820|ref|ZP_06267965.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010]
 gi|282588389|gb|EFB93549.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010]
          Length = 443

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 42/84 (50%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          L  +I+K++ LS  D+T+FV  +F+ + +       +KI    TF V+    R   N+ T
Sbjct: 9  LAIAIAKKYKLSNVDATKFVEAIFDIVTEELKNNGQVKIKGLGTFKVQSVKPRESVNVNT 68

Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93
           + V I+    + F   + +K+ +
Sbjct: 69 GERVLIEGHDKISFTPDATMKELV 92


>gi|282859928|ref|ZP_06269016.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010]
 gi|282587331|gb|EFB92548.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010]
          Length = 91

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 40/71 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  I+    LS+ DS + +      I ++  +G+ I++  F TF V ++ +R G
Sbjct: 1  MNKSELIDQIAASSDLSKADSKKALDATIKAIKEALAKGDKIQLVGFGTFAVNERPAREG 60

Query: 65 RNLQTNQEVKI 75
           N  T ++++I
Sbjct: 61 INPSTKEKIQI 71


>gi|153808081|ref|ZP_01960749.1| hypothetical protein BACCAC_02367 [Bacteroides caccae ATCC 43185]
 gi|149128984|gb|EDM20200.1| hypothetical protein BACCAC_02367 [Bacteroides caccae ATCC 43185]
          Length = 91

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 40/82 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K+ G+ +      V    + + DS    E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEITKKTGIDKTTVLTTVEAFMDAVKDSLSNDENVYLRGFGSFVVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82


>gi|116511709|ref|YP_808925.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris
          SK11]
 gi|116107363|gb|ABJ72503.1| nucleoid DNA-binding protein [Lactococcus lactis subsp. cremoris
          SK11]
          Length = 120

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 17/85 (20%), Positives = 44/85 (51%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          ++ +L+  ++    LS+ ++ + +      I      G  + IS+F TF V++  +R+  
Sbjct: 3  SKQELIDYVADRTELSKVNAAKAINAFVEAITYYISEGATVHISNFGTFEVRKHAARISH 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90
          ++ + +++ +  + + VF+A   LK
Sbjct: 63 DVHSREKILVGEQNIPVFRAGKALK 87


>gi|329889322|ref|ZP_08267665.1| DNA-binding protein HU 1 [Brevundimonas diminuta ATCC 11568]
 gi|328844623|gb|EGF94187.1| DNA-binding protein HU 1 [Brevundimonas diminuta ATCC 11568]
          Length = 91

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 44/86 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L+  +++  G+SR  +   +    +++  S V+G  +++  F +F    + + V 
Sbjct: 1  MTKTELIGRMAEAAGISRDQAKLALEAFTDQVTGSLVQGRDVRLVGFGSFVAVDRKAGVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+     R   F+    LK
Sbjct: 61 RNPQTGEEIARPASRTARFRPGEGLK 86


>gi|89145734|gb|ABD62056.1| Hbb [Borrelia genomosp. 1]
 gi|89145736|gb|ABD62057.1| Hbb [Borrelia genomosp. 1]
          Length = 108

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           +T+SD+V  IS         L +K     +   F ++  +      I+  SF TF V K+
Sbjct: 9   VTKSDIVDQISLHIRNNNLKLEKKYIRLVIDAFFEKLKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG    RN QT + VK+    V  F+    LK+R+ 
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGRDLKERVW 104


>gi|318606261|emb|CBY27759.1| integration host factor beta subunit [Yersinia enterocolitica
          subsp. palearctica Y11]
          Length = 66

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          +   +  +   GE I+I  F +F +  +  RVGRN +T  +V+++ + V  FK    L+ 
Sbjct: 1  MLEHMAGTLAEGERIEIRGFGSFSLHYRAPRVGRNPKTGAKVELEGKYVPHFKPGKELRD 60

Query: 92 R 92
          R
Sbjct: 61 R 61


>gi|224026370|ref|ZP_03644736.1| hypothetical protein BACCOPRO_03126 [Bacteroides coprophilus DSM
          18228]
 gi|224019606|gb|EEF77604.1| hypothetical protein BACCOPRO_03126 [Bacteroides coprophilus DSM
          18228]
          Length = 91

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 40/82 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +      +    + + DS  + E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEIAKNTGIDKATVLTTLEAFMDSVKDSLSKDENVYLRGFGSFIVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82


>gi|304321951|ref|YP_003855594.1| Bacterial nucleoid DNA-binding protein HU-beta [Parvularcula
          bermudensis HTCC2503]
 gi|303300853|gb|ADM10452.1| Bacterial nucleoid DNA-binding protein HU-beta [Parvularcula
          bermudensis HTCC2503]
          Length = 90

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ V  ++    +++ D+ R V  +F+ I ++   G+ ++I  F TF   ++ +R G
Sbjct: 1  MNKNEFVDRVAAIADITKADAGRTVDAVFDAITEALKNGDDVRIVGFGTFSSSRRPAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + ++I       F A   LK
Sbjct: 61 RNPRTGETIQIKASNQPKFSAGKGLK 86


>gi|241764993|ref|ZP_04762990.1| histone family protein DNA-binding protein [Acidovorax
          delafieldii 2AN]
 gi|241365427|gb|EER60214.1| histone family protein DNA-binding protein [Acidovorax
          delafieldii 2AN]
          Length = 103

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 44/86 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R++LV+ ++ +  LS+  +   + TL + I  +  +G  +++  F TF   ++ +R G
Sbjct: 1  MNRAELVEILASKNDLSKAAANAVLETLIDTIQTAVKKGNPVQLVGFGTFKSAKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          +N  T   +KI    V  F A +  K
Sbjct: 61 KNPATGAALKIPASTVPKFVAGAKFK 86


>gi|67920710|ref|ZP_00514229.1| Histone-like bacterial DNA-binding protein [Crocosphaera watsonii
          WH 8501]
 gi|67856827|gb|EAM52067.1| Histone-like bacterial DNA-binding protein [Crocosphaera watsonii
          WH 8501]
          Length = 93

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 17/89 (19%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++ +  +++K +   ++   + I ++    + + +  F +F  + + +R G
Sbjct: 1  MNKSELIDAVANKAEVTKKQAEMVISATIDTIMEAVASDDKVTLVGFGSFESRDRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +TN+++ I   +V  F A    K+ +
Sbjct: 61 RNPKTNEKMNIPATKVPAFSAGKKFKEAV 89


>gi|184200009|ref|YP_001854216.1| HU_IHF family transcriptional regulator [Kocuria rhizophila
          DC2201]
 gi|183580239|dbj|BAG28710.1| putative DNA-binding protein HU [Kocuria rhizophila DC2201]
          Length = 94

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSR 62
           + RS+LV  ++++ G ++      + +LF E+ +S+V +GE I I  + +     + +R
Sbjct: 2  AMNRSELVAEVAEKSGNTQAAVNGVLDSLF-EVFESSVSKGEKITIPGWMSVERTDRAAR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN QT + ++I     V   A S LK  +
Sbjct: 61 QGRNPQTGEAIQIPAGHGVKLTAGSKLKAAV 91


>gi|53712845|ref|YP_098837.1| DNA-binding protein HU [Bacteroides fragilis YCH46]
 gi|60681069|ref|YP_211213.1| putative histone-like DNA-binding protein HU1 [Bacteroides
          fragilis NCTC 9343]
 gi|253563170|ref|ZP_04840627.1| DNA-binding protein HU [Bacteroides sp. 3_2_5]
 gi|255008357|ref|ZP_05280483.1| putative histone-like DNA-binding protein HU1 [Bacteroides
          fragilis 3_1_12]
 gi|265762946|ref|ZP_06091514.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16]
 gi|313146081|ref|ZP_07808274.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
 gi|52215710|dbj|BAD48303.1| DNA-binding protein HU [Bacteroides fragilis YCH46]
 gi|60492503|emb|CAH07273.1| putative histone-like DNA-binding protein HU1 [Bacteroides
          fragilis NCTC 9343]
 gi|251946946|gb|EES87228.1| DNA-binding protein HU [Bacteroides sp. 3_2_5]
 gi|263255554|gb|EEZ26900.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16]
 gi|301162554|emb|CBW22101.1| putative histone-like DNA-binding protein HU1 [Bacteroides
          fragilis 638R]
 gi|313134848|gb|EFR52208.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
          Length = 91

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 40/82 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +      V    + + DS  + E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEIAKNTGVDKVTVLTTVEAFMDAVKDSLSKDENVYLRGFGSFVVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82


>gi|332670429|ref|YP_004453437.1| histone family protein DNA-binding protein [Cellulomonas fimi
          ATCC 484]
 gi|332339467|gb|AEE46050.1| histone family protein DNA-binding protein [Cellulomonas fimi
          ATCC 484]
          Length = 93

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/90 (21%), Positives = 47/90 (52%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R++LV++++ + G +  ++ + +      + +    GE++ I  F      ++ +R 
Sbjct: 2  SVNRTELVQAVAAKAGTANAEADKVLKAFQEVLVEQLAAGESVTIPGFLAVSRAERSART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          G N QT ++++I     V   A S+LK+ +
Sbjct: 62 GINPQTGEKLEIPAGYRVKLTAGSVLKRAV 91


>gi|224540005|ref|ZP_03680544.1| hypothetical protein BACCELL_04917 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224518372|gb|EEF87477.1| hypothetical protein BACCELL_04917 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 59

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          G AI + SF TF VK+K  R+  N  T   + + P+ V+ ++ S+ LK
Sbjct: 8  GNAISVQSFGTFEVKKKAERITINPTTKLRMLVPPKLVLTYRPSTALK 55


>gi|329936537|ref|ZP_08286273.1| DNA-binding protein HU1/hs1 [Streptomyces griseoaurantiacus M045]
 gi|329304052|gb|EGG47934.1| DNA-binding protein HU1/hs1 [Streptomyces griseoaurantiacus M045]
          Length = 93

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV +++    ++RKD+   +      + +   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAAFAETVGEIVAKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN QT   ++I     V   A S LK+
Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKE 88


>gi|294787476|ref|ZP_06752729.1| DNA-binding protein HU [Parascardovia denticolens F0305]
 gi|315226953|ref|ZP_07868741.1| DNA-binding protein HU [Parascardovia denticolens DSM 10105]
 gi|294484832|gb|EFG32467.1| DNA-binding protein HU [Parascardovia denticolens F0305]
 gi|315121085|gb|EFT84217.1| DNA-binding protein HU [Parascardovia denticolens DSM 10105]
          Length = 92

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 45/87 (51%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +SDLV  I+++  L++  S   V      + +S   GE ++++   +    ++ +R GRN
Sbjct: 5  KSDLVAKIAQKTSLTKAQSEAAVNAFQEVLVESLKSGEGLRLTGVLSASRVKRAARTGRN 64

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           +T + + I     V  +A S+LKK +
Sbjct: 65 PRTGETINIPAGYGVKLQAGSLLKKAV 91


>gi|254525351|ref|ZP_05137404.1| DNA-binding protein HU-beta [Stenotrophomonas sp. SKA14]
 gi|219718467|gb|EED36994.1| DNA-binding protein HU-beta [Stenotrophomonas sp. SKA14]
          Length = 71

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          G+A+ +  F TF V+ + +R GRN +T   +KI   +   FKA   LK  +
Sbjct: 20 GDAVTLVGFGTFQVRDRAARTGRNPKTGDTIKIAASKNPSFKAGKALKDAV 70


>gi|189425274|ref|YP_001952451.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
 gi|189421533|gb|ACD95931.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
          Length = 95

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 17/72 (23%), Positives = 38/72 (52%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +S+LV  +++  GL++  + + + +    +  +   G+ + +  F TF    + +R GRN
Sbjct: 3  KSELVAKMAEGAGLTKAQAEKALASFIAGVTGALTAGDKVTLVGFGTFSAITRKARTGRN 62

Query: 67 LQTNQEVKIDPR 78
           QT + +KI  +
Sbjct: 63 PQTGKAIKIAAK 74


>gi|307566168|ref|ZP_07628623.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
 gi|307345133|gb|EFN90515.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
          Length = 91

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 35/65 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  I+   GLS+ D+ + +      I ++ V GE I++  F TF V ++  R G
Sbjct: 1  MNKSELIDQIAANSGLSKADAKKALNATTEVIKNALVEGEKIQLVGFGTFSVNERPEREG 60

Query: 65 RNLQT 69
           N  T
Sbjct: 61 INPST 65


>gi|294791461|ref|ZP_06756618.1| DNA-binding protein HU [Scardovia inopinata F0304]
 gi|294457932|gb|EFG26286.1| DNA-binding protein HU [Scardovia inopinata F0304]
          Length = 92

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 45/87 (51%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +SDLV  I+++  L++  S   +      + +S   GE ++++   +    ++ +R GRN
Sbjct: 5  KSDLVAKIAQKTSLTKAQSEAAINAFQEVLVESLESGEGLRLTGVLSASRVKRAARTGRN 64

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           +T + + I     V  +A S+LKK +
Sbjct: 65 PRTGEAINIPAGYGVKLQAGSLLKKAV 91


>gi|281491375|ref|YP_003353355.1| DNA-binding protein HU [Lactococcus lactis subsp. lactis KF147]
 gi|281375116|gb|ADA64634.1| DNA-binding protein HU [Lactococcus lactis subsp. lactis KF147]
          Length = 108

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/85 (22%), Positives = 47/85 (55%), Gaps = 7/85 (8%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          ++ +L+  ++    LS+ ++ + +T   +E       G  + IS+F TF V+++ +RV  
Sbjct: 3  SKQELIDYVADRTELSKLNAAKAITYYISE-------GTPVHISNFGTFEVRKRAARVSH 55

Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90
          ++ + +++ +  + + VF+A   LK
Sbjct: 56 DVHSREKILVGEQNIPVFRAGKALK 80


>gi|11514467|pdb|1EXE|A Chain A, Solution Structure Of A Mutant Of Transcription Factor
          1.
 gi|11514468|pdb|1EXE|B Chain B, Solution Structure Of A Mutant Of Transcription Factor 1
          Length = 99

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/87 (22%), Positives = 48/87 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K+I+++ GL++   ++ + +    I ++  +G+ ++++ F       + +R G
Sbjct: 1  MNKTELIKAIAQDTGLTQVSVSKMLASFEKIITETVAKGDKVQLTGFLNIKPVARQARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
           N QT + ++I P   V  K    LKK
Sbjct: 61 FNPQTQEALEIAPSVGVSVKPGESLKK 87


>gi|29831670|ref|NP_826304.1| DNA-binding protein HU 1 [Streptomyces avermitilis MA-4680]
 gi|297200046|ref|ZP_06917443.1| integration host factor, beta subunit [Streptomyces sviceus ATCC
          29083]
 gi|29608786|dbj|BAC72839.1| putative DNA-binding protein Hu 1 [Streptomyces avermitilis
          MA-4680]
 gi|197710519|gb|EDY54553.1| integration host factor, beta subunit [Streptomyces sviceus ATCC
          29083]
          Length = 93

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV +++    ++RKD+   +      + +   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAAFAETVGEIVAKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN QT   ++I     V   A S LK+
Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKE 88


>gi|222080181|ref|YP_002540044.1| HNS-type DNA binding protein [Agrobacterium vitis S4]
 gi|221738826|gb|ACM39605.1| HNS-type DNA binding protein [Agrobacterium vitis S4]
          Length = 92

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 39/85 (45%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+ + GL++  +   V  +F  I D+A       I  F  F VK    R GR
Sbjct: 3  TTNEIADKIAADNGLTKVQAKGIVEAVFQAIADAAGSDAETSIPGFGKFKVKASPEREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90
          N  T +++ +   + + F  +  LK
Sbjct: 63 NPATGEKMTVAASKKLTFAPAKALK 87


>gi|73537872|ref|YP_298239.1| HU family DNA-binding protein [Ralstonia eutropha JMP134]
 gi|94313671|ref|YP_586880.1| histone-like DNA-binding protein [Cupriavidus metallidurans CH34]
 gi|72121209|gb|AAZ63395.1| HU family DNA-binding protein [Ralstonia eutropha JMP134]
 gi|93357523|gb|ABF11611.1| Histone-like bacterial DNA-binding protein [Cupriavidus
          metallidurans CH34]
          Length = 93

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 44/86 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +I+ E  LS   + R +    + I  +  +G+++ +  F +F   ++ +R G
Sbjct: 1  MNKGELVSAIAAEAELSNAAAERALNAALDSIKKAVAKGDSVTLVGFGSFSSGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + +KI   + V F A    K
Sbjct: 61 RNPRTGETIKIPAAKTVKFSAGQGFK 86


>gi|226365961|ref|YP_002783744.1| DNA-binding protein HU [Rhodococcus opacus B4]
 gi|226244451|dbj|BAH54799.1| putative DNA-binding protein HU [Rhodococcus opacus B4]
          Length = 231

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  RG+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTEKLGTDRRTATEAVEHVVDTIVRAVHRGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + VK+ P  V  F+  +  K  I
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVI 89


>gi|111023460|ref|YP_706432.1| DNA-binding protein [Rhodococcus jostii RHA1]
 gi|110822990|gb|ABG98274.1| DNA-binding protein [Rhodococcus jostii RHA1]
          Length = 230

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  RG+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTEKLGTDRRTATEAVEHVVDTIVRAVHRGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + VK+ P  V  F+  +  K  I
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVI 89


>gi|330994052|ref|ZP_08317982.1| DNA-binding protein HRL53 [Gluconacetobacter sp. SXCC-1]
 gi|329758998|gb|EGG75512.1| DNA-binding protein HRL53 [Gluconacetobacter sp. SXCC-1]
          Length = 95

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 45/93 (48%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M K + + +LV ++++E  L++  +   V  +F  I  +    + +++  F TF    + 
Sbjct: 1  MEKPLNKQELVAAVAEEADLAKAKAGEVVDAVFGAIEKALASKQEVRLVGFGTFVTATRK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +  GRN +T + + I     V FK    LK+ +
Sbjct: 61 AAKGRNPRTGEPLDIPASTSVRFKPGKNLKEAV 93


>gi|226305897|ref|YP_002765857.1| DNA-binding protein HU [Rhodococcus erythropolis PR4]
 gi|226185014|dbj|BAH33118.1| putative DNA-binding protein HU [Rhodococcus erythropolis PR4]
          Length = 228

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  RGE++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTEKLGSDRRTATDAVEHVVDTIVRAVHRGESVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + VK+ P  V  F+  +  K  I
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVI 89


>gi|229493365|ref|ZP_04387154.1| DNA-binding protein [Rhodococcus erythropolis SK121]
 gi|229319681|gb|EEN85513.1| DNA-binding protein [Rhodococcus erythropolis SK121]
          Length = 183

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  RGE++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTEKLGSDRRTATDAVEHVVDTIVRAVHRGESVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + VK+ P  V  F+  +  K  I
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVI 89


>gi|221054358|ref|XP_002258318.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|193808387|emb|CAQ39090.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 188

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/101 (22%), Positives = 51/101 (50%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           +S+ IT+  +++ +S E   S+K   + +  +F+ I       E I I  F  ++   + 
Sbjct: 54  ISQAITKKQIIEEVSMETKESKKTVEKIMNGIFDNIYKHLENNEKIYIHKFGMYYNIFRK 113

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
            R  +N++T +++ I+   +  FK S I +  I  +++ +K
Sbjct: 114 KRCIKNMRTKEDIHIESSHMPHFKFSKIFRDLIKVNVKAKK 154


>gi|317047559|ref|YP_004115207.1| integration host factor subunit beta [Pantoea sp. At-9b]
 gi|316949176|gb|ADU68651.1| integration host factor, beta subunit [Pantoea sp. At-9b]
          Length = 94

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLAGQQTHIPAKVVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V ++ + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVDLEGKYVPHFKPGKELRDR 89


>gi|154247521|ref|YP_001418479.1| histone family protein DNA-binding protein [Xanthobacter
          autotrophicus Py2]
 gi|154161606|gb|ABS68822.1| histone family protein DNA-binding protein [Xanthobacter
          autotrophicus Py2]
          Length = 92

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 47/88 (53%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+++L+ ++++E  L++  +   V   F+ I  +   GE +K+  F +F V  + +R GR
Sbjct: 3  TKNELIAAVAEEAKLTKTAAAAAVDATFDIIAKALQEGEEVKLIGFGSFSVVTRAAREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93
          N +T + VKI   +   F     LK+ +
Sbjct: 63 NPRTGKPVKIKASKAPKFTPGKGLKEAV 90


>gi|291616907|ref|YP_003519649.1| IhfB [Pantoea ananatis LMG 20103]
 gi|304397072|ref|ZP_07378951.1| integration host factor, beta subunit [Pantoea sp. aB]
 gi|308186258|ref|YP_003930389.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea
          vagans C9-1]
 gi|291151937|gb|ADD76521.1| IhfB [Pantoea ananatis LMG 20103]
 gi|304355221|gb|EFM19589.1| integration host factor, beta subunit [Pantoea sp. aB]
 gi|308056768|gb|ADO08940.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea
          vagans C9-1]
 gi|327393335|dbj|BAK10757.1| integration host factor beta- subunit IhfB [Pantoea ananatis
          AJ13355]
          Length = 94

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ +   +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLAGQHTHIPAKVVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V ++ + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVDLEGKYVPHFKPGKELRDR 89


>gi|308235225|ref|ZP_07665962.1| DNA-binding protein HB1 [Gardnerella vaginalis ATCC 14018]
          Length = 93

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 45/89 (50%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +SDLV  I+++  L++  +   V    +   ++   GE +K++   +    ++  R GRN
Sbjct: 5  KSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEALQSGEGLKLTGLFSAERVKRAERTGRN 64

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           +T + +KI     V   A S+LKK + +
Sbjct: 65 PRTGETIKIPASYGVRISAGSLLKKAVTE 93


>gi|21223911|ref|NP_629690.1| histone-like DNA binding protein [Streptomyces coelicolor A3(2)]
 gi|256784990|ref|ZP_05523421.1| histone-like DNA binding protein [Streptomyces lividans TK24]
 gi|289768882|ref|ZP_06528260.1| DNA-binding protein HU 2 [Streptomyces lividans TK24]
 gi|61222645|sp|P0A3H7|DBH2_STRCO RecName: Full=DNA-binding protein HU 2
 gi|61222646|sp|P0A3H8|DBH2_STRLI RecName: Full=DNA-binding protein HU 2
 gi|3355704|emb|CAA20004.1| histone-like DNA binding protein [Streptomyces coelicolor A3(2)]
 gi|5926707|dbj|BAA84639.1| histone-like protein [Streptomyces lividans]
 gi|289699081|gb|EFD66510.1| DNA-binding protein HU 2 [Streptomyces lividans TK24]
          Length = 218

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 7/112 (6%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+ +   V  + + +  + V G+ + ++ F +F    + +R  
Sbjct: 1   MNKAQLVEAIADKLG-GRQQAADAVDAVLDALVRAVVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT---SPSGS 113
           RN QT + V++    V  F+A    K  +      +K  K+D+    +P GS
Sbjct: 60  RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGS---KKLPKNDIAVKKAPKGS 108


>gi|288928445|ref|ZP_06422292.1| DNA-binding protein HU [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331279|gb|EFC69863.1| DNA-binding protein HU [Prevotella sp. oral taxon 317 str. F0108]
          Length = 94

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/98 (22%), Positives = 50/98 (51%), Gaps = 5/98 (5%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63
           +T++D++  I+ + G+ +KD +  V +    I  S + + + + +  F +F +K + ++ 
Sbjct: 1   MTKADIINEIAIQTGIQKKDVSVVVESFMETIKGSLLDKKDNVYLRGFGSFIIKHRAAKT 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
            RN+  N  + I    +  FK +    K  ++ MRG +
Sbjct: 61  ARNIAKNTTITIAAHDLPCFKPA----KSFVESMRGEQ 94


>gi|302542250|ref|ZP_07294592.1| putative DNA binding protein HU [Streptomyces hygroscopicus ATCC
          53653]
 gi|302459868|gb|EFL22961.1| putative DNA binding protein HU [Streptomyces himastatinicus ATCC
          53653]
          Length = 194

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F   ++ +R  
Sbjct: 1  MNKAQLVEAIADKVG-GRQQAAEAVDAVLDAIVRAVVGGDRVSVTGFGSFEKVERPARYA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + V++    V  F+A    K
Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85


>gi|148244693|ref|YP_001219387.1| integration host factor, beta subunit [Candidatus Vesicomyosocius
          okutanii HA]
 gi|146326520|dbj|BAF61663.1| integration host factor, beta subunit [Candidatus Vesicomyosocius
          okutanii HA]
          Length = 92

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 45/87 (51%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + DL+ ++S    LS+ D+   V  +  E+    V GE ++I  F  F+ K + +R G N
Sbjct: 3  KPDLILNLSNSSNLSKTDAKIAVEVILEELTQGIVSGEGVEIRGFGGFYKKYRKARQGIN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           +T++  ++  + V  FK    LK+ I
Sbjct: 63 PKTSERTEVSEKFVPFFKPGKFLKEII 89


>gi|1280533|gb|AAC73071.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58
           +T+SD+V  I+         L +K     +   F E+  +      I+  SF TF V K+
Sbjct: 9   VTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           KG    RN QT   VK+    V  F+    LK+R+ 
Sbjct: 69  KGRLNARNPQTGVYVKVLDHHVAYFRPGKDLKERVW 104


>gi|113969892|ref|YP_733685.1| histone family protein DNA-binding protein [Shewanella sp. MR-4]
 gi|113884576|gb|ABI38628.1| histone family protein DNA-binding protein [Shewanella sp. MR-4]
          Length = 91

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L++ I+     S+  +   V  +  +I  +   GE + +  F TF ++    + G
Sbjct: 1  MNKAQLIQRIATSLEQSQASTKPVVEQILQQIHIALSEGEKVFLPQFGTFELRYHLPKSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + ++I       FKA++ LK+ I +
Sbjct: 61 RNPQTGETIEIAGFNQPSFKAATALKQAINE 91


>gi|108757022|ref|YP_629691.1| DNA-binding protein HU [Myxococcus xanthus DK 1622]
 gi|108460902|gb|ABF86087.1| DNA-binding protein HU [Myxococcus xanthus DK 1622]
          Length = 89

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV+ ++ +  L++K + + +  +F  I  +  +        F T+ V+ + +R  
Sbjct: 1  MTKAELVEVVAAQTRLTKKSAAQILDIVFTNIGKAVKKDARFSYPGFGTWSVRSRKARKI 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QTN+ +K+   + + F+ +  LK
Sbjct: 61 RNPQTNEMMKLKASKTIGFRPAKELK 86


>gi|292490832|ref|YP_003526271.1| histone family protein DNA-binding protein [Nitrosococcus
           halophilus Nc4]
 gi|291579427|gb|ADE13884.1| histone family protein DNA-binding protein [Nitrosococcus
           halophilus Nc4]
          Length = 109

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/77 (22%), Positives = 38/77 (49%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           +L   I+K+ G++       +     ++      G+ +++S F  F+ K   +R  RN +
Sbjct: 24  ELAGRIAKQTGMTPDQVEEILAAFKKQVIADLTSGQEVRLSHFGKFYAKHMDAREARNPR 83

Query: 69  TNQEVKIDPRRVVVFKA 85
           T + +++ PR  + F+A
Sbjct: 84  TGEIIQVPPRSYLRFRA 100


>gi|294673427|ref|YP_003574043.1| HU family DNA-binding protein [Prevotella ruminicola 23]
 gi|294471958|gb|ADE81347.1| DNA-binding protein, HU family [Prevotella ruminicola 23]
          Length = 91

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDS-AVRGEAIKISSFATFHVKQKGSRV 63
          +T+++++  I++E GL++KD    V      I +S A   E + +  F TF VK++  + 
Sbjct: 1  MTKAEIINRIAEETGLAKKDVAISVEAFMECIRESLASEKENVYLRGFGTFVVKRRAQKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKAS 86
           RN+  N  + I+      FK S
Sbjct: 61 ARNISKNTTLVIEAHDFPAFKPS 83


>gi|29346909|ref|NP_810412.1| DNA-binding protein HU [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572374|ref|ZP_04849777.1| DNA-binding protein HU [Bacteroides sp. 1_1_6]
 gi|298386444|ref|ZP_06996000.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
 gi|29338807|gb|AAO76606.1| DNA-binding protein HU [Bacteroides thetaiotaomicron VPI-5482]
 gi|251838149|gb|EES66237.1| DNA-binding protein HU [Bacteroides sp. 1_1_6]
 gi|298260821|gb|EFI03689.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
          Length = 91

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 39/82 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K+ G+ +      V      + DS    E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEITKKTGIDKTTVLTTVEAFMEAVKDSLSNDENVYLRGFGSFVVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82


>gi|302558180|ref|ZP_07310522.1| DNA binding protein HU [Streptomyces griseoflavus Tu4000]
 gi|302475798|gb|EFL38891.1| DNA binding protein HU [Streptomyces griseoflavus Tu4000]
          Length = 213

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV++I+ + G  R+ +   V  + + I  + V GE + ++ F +F    + +R  
Sbjct: 1  MNKAQLVEAIADKVG-GRQQAAEAVDHVLDAIVRAVVAGERVSVTGFGSFEKVDRPARYA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + V++    V  F+A    K
Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85


>gi|212693203|ref|ZP_03301331.1| hypothetical protein BACDOR_02713 [Bacteroides dorei DSM 17855]
 gi|212664308|gb|EEB24880.1| hypothetical protein BACDOR_02713 [Bacteroides dorei DSM 17855]
          Length = 59

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          G  I I  F TF VK+K  R+  N  T Q + I P+ V+ +K S  LK++
Sbjct: 8  GNNIVIQGFGTFEVKKKLERISINPATQQRMLIPPKLVLTYKPSVTLKEK 57


>gi|108798891|ref|YP_639088.1| nucleoid protein Hbs [Mycobacterium sp. MCS]
 gi|119868006|ref|YP_937958.1| nucleoid protein Hbs [Mycobacterium sp. KMS]
 gi|126434491|ref|YP_001070182.1| nucleoid protein Hbs [Mycobacterium sp. JLS]
 gi|108769310|gb|ABG08032.1| bacterial nucleoid protein Hbs [Mycobacterium sp. MCS]
 gi|119694095|gb|ABL91168.1| bacterial nucleoid protein Hbs [Mycobacterium sp. KMS]
 gi|126234291|gb|ABN97691.1| bacterial nucleoid protein Hbs [Mycobacterium sp. JLS]
          Length = 225

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ + G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDALTTKMGTDRRQATEAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + VK+ P  V  F+  +  K
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFK 86


>gi|114047123|ref|YP_737673.1| histone family protein DNA-binding protein [Shewanella sp. MR-7]
 gi|113888565|gb|ABI42616.1| histone family protein DNA-binding protein [Shewanella sp. MR-7]
          Length = 91

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L++ I+     S+  +   V  +  +I  +   GE + +  F TF ++    + G
Sbjct: 1  MNKAQLIQRIATSLEQSQASTKPVVEQILQQIHIALSEGEKVFLPQFGTFELRFHLPKSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + ++I       FKA++ LKK I +
Sbjct: 61 RNPQTGETIEIAGFNQPSFKAATALKKAINE 91


>gi|315499784|ref|YP_004088587.1| histone family protein DNA-binding protein [Asticcacaulis
          excentricus CB 48]
 gi|315417796|gb|ADU14436.1| histone family protein DNA-binding protein [Asticcacaulis
          excentricus CB 48]
          Length = 92

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 17/68 (25%), Positives = 40/68 (58%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+++LV +I+ + GL+++ + + V    + + D+  +GE +++  F TF   ++ +   R
Sbjct: 3  TKAELVAAIADQAGLTKEQAKKAVDAFTDSVVDALKKGEEVRLVGFGTFLAVKREAGTAR 62

Query: 66 NLQTNQEV 73
          N +T + V
Sbjct: 63 NPRTGETV 70


>gi|153878657|ref|ZP_02004647.1| Integration host factor beta-subunit [Beggiatoa sp. PS]
 gi|152064879|gb|EDN65353.1| Integration host factor beta-subunit [Beggiatoa sp. PS]
          Length = 73

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 33/65 (50%)

Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88
          + T+  ++  S   GE I+I  F +F +  +  R GRN +T + V +  + V  FK    
Sbjct: 1  MKTILEQMAQSLENGERIEIRGFGSFSLHYRPPRKGRNPKTGEPVDLPEKFVPHFKPGKE 60

Query: 89 LKKRI 93
          L+ R+
Sbjct: 61 LRDRV 65


>gi|260912465|ref|ZP_05919002.1| DNA-binding protein HU [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633437|gb|EEX51590.1| DNA-binding protein HU [Prevotella sp. oral taxon 472 str. F0295]
          Length = 93

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63
           +T++D++  I+ + G+ +KD +  V +    I  S + + + + +  F +F +K + ++ 
Sbjct: 1   MTKADIINEIAIQTGIQKKDVSVVVESFMETIKGSLLDKKDNVYLRGFGSFIIKHRAAKT 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
            RN+  N  + I    +  FK +    K  ++ MRG 
Sbjct: 61  ARNIAKNTTITIAAHDLPCFKPA----KSFVESMRGE 93


>gi|182435719|ref|YP_001823438.1| putative histone-like DNA-binding protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326776344|ref|ZP_08235609.1| histone family protein DNA-binding protein [Streptomyces cf.
           griseus XylebKG-1]
 gi|178464235|dbj|BAG18755.1| putative histone-like DNA-binding protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326656677|gb|EGE41523.1| histone family protein DNA-binding protein [Streptomyces cf.
           griseus XylebKG-1]
          Length = 224

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 7/112 (6%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1   MNKAQLVEAIADKVG-GRQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT---SPSGS 113
           RN QT + V++    V  F+A    K  +      +K  K+DV    +P GS
Sbjct: 60  RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGS---KKLPKNDVAVKKAPKGS 108


>gi|23335497|ref|ZP_00120732.1| COG0776: Bacterial nucleoid DNA-binding protein [Bifidobacterium
          longum DJO10A]
 gi|23466342|ref|NP_696945.1| DNA-binding protein HU [Bifidobacterium longum NCC2705]
 gi|189440838|ref|YP_001955919.1| nucleoid DNA-binding protein [Bifidobacterium longum DJO10A]
 gi|213691575|ref|YP_002322161.1| histone family protein DNA-binding protein [Bifidobacterium
          longum subsp. infantis ATCC 15697]
 gi|227546710|ref|ZP_03976759.1| DNA-binding protein HU [Bifidobacterium longum subsp. infantis
          ATCC 55813]
 gi|239620686|ref|ZP_04663717.1| DNA-binding protein Hu [Bifidobacterium longum subsp. infantis
          CCUG 52486]
 gi|296454624|ref|YP_003661767.1| histone family protein DNA-binding protein [Bifidobacterium
          longum subsp. longum JDM301]
 gi|312132302|ref|YP_003999641.1| hima [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481730|ref|ZP_07940762.1| bacterial DNA-binding protein [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689691|ref|YP_004209425.1| DNA-binding protein [Bifidobacterium longum subsp. infantis 157F]
 gi|322691653|ref|YP_004221223.1| DNA-binding protein [Bifidobacterium longum subsp. longum JCM
          1217]
 gi|24212656|sp|P17615|DBH1_BIFLO RecName: Full=DNA-binding protein HB1
 gi|23327099|gb|AAN25581.1| DNA-binding protein Hu [Bifidobacterium longum NCC2705]
 gi|189429273|gb|ACD99421.1| Bacterial nucleoid DNA-binding protein [Bifidobacterium longum
          DJO10A]
 gi|213523036|gb|ACJ51783.1| histone family protein DNA-binding protein [Bifidobacterium
          longum subsp. infantis ATCC 15697]
 gi|227212672|gb|EEI80553.1| DNA-binding protein HU [Bifidobacterium longum subsp. infantis
          ATCC 55813]
 gi|239516262|gb|EEQ56129.1| DNA-binding protein Hu [Bifidobacterium longum subsp. infantis
          CCUG 52486]
 gi|291516247|emb|CBK69863.1| Bacterial nucleoid DNA-binding protein [Bifidobacterium longum
          subsp. longum F8]
 gi|296184055|gb|ADH00937.1| histone family protein DNA-binding protein [Bifidobacterium
          longum subsp. longum JDM301]
 gi|311773444|gb|ADQ02932.1| HimA [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916844|gb|EFV38234.1| bacterial DNA-binding protein [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456509|dbj|BAJ67131.1| DNA-binding protein [Bifidobacterium longum subsp. longum JCM
          1217]
 gi|320457663|dbj|BAJ68284.1| DNA-binding protein [Bifidobacterium longum subsp. infantis ATCC
          15697]
 gi|320461027|dbj|BAJ71647.1| DNA-binding protein [Bifidobacterium longum subsp. infantis 157F]
          Length = 93

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 46/89 (51%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +SDLV  I+++  L++  +   V    +   ++   GE +K++   +    ++ +R GRN
Sbjct: 5  KSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTGRN 64

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           +T +++ I     V   A S+LKK + +
Sbjct: 65 PRTGEQIDIPASYGVRISAGSLLKKAVTE 93


>gi|296115319|ref|ZP_06833958.1| putative DNA binding protein [Gluconacetobacter hansenii ATCC
          23769]
 gi|295978142|gb|EFG84881.1| putative DNA binding protein [Gluconacetobacter hansenii ATCC
          23769]
          Length = 91

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 44/88 (50%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          +DLV  I+     S+ D+ + +  L + +  +A  G+ I + +F  F VK+  +R GRN 
Sbjct: 4  ADLVDHIATTTDTSKTDTRKVLDALIDTMTAAAKTGDEITLPNFGKFKVKEVAAREGRNP 63

Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95
           T   ++I   R + F  +  LK  + D
Sbjct: 64 ATGATIQIAASRKLTFTPAKALKDSLND 91


>gi|145224804|ref|YP_001135482.1| histone family protein DNA-binding protein [Mycobacterium gilvum
          PYR-GCK]
 gi|315445134|ref|YP_004078013.1| bacterial nucleoid protein Hbs [Mycobacterium sp. Spyr1]
 gi|145217290|gb|ABP46694.1| bacterial nucleoid protein Hbs [Mycobacterium gilvum PYR-GCK]
 gi|315263437|gb|ADU00179.1| bacterial nucleoid protein Hbs [Mycobacterium sp. Spyr1]
          Length = 217

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +GE++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTEKLGSDRRQATAAVENVVDTIVRAVHKGESVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + VK+ P  V  F+  +  K
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFK 86


>gi|195953183|ref|YP_002121473.1| histone family protein DNA-binding protein [Hydrogenobaculum sp.
          Y04AAS1]
 gi|195932795|gb|ACG57495.1| histone family protein DNA-binding protein [Hydrogenobaculum sp.
          Y04AAS1]
          Length = 99

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SD++K I K    S+KD    +    + I +  ++ E I++     F +K+K S++ 
Sbjct: 1  MKKSDIIKQIDKYTNYSQKDIKLVIEYFLDAIMEGLIQDERIELRRLGIFLLKKKPSKMV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T  +  +  R +  FK    +KK +
Sbjct: 61 INPRTGVQTLVSERYLPYFKMGKYIKKEL 89


>gi|317125453|ref|YP_004099565.1| bacterial nucleoid protein Hbs [Intrasporangium calvum DSM 43043]
 gi|315589541|gb|ADU48838.1| bacterial nucleoid protein Hbs [Intrasporangium calvum DSM 43043]
          Length = 228

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++    G SR+ ++  +  + + +     +G  + I+ F TF    + +R G
Sbjct: 1  MNKAELIGALEARLG-SRRVASDALEAVLDIVIREVAKGGKVGITGFGTFERANRAARTG 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T   VKI   R+  F+A +  K
Sbjct: 60 RNPKTGDTVKIKKTRIPKFRAGTNFK 85


>gi|22299810|ref|NP_683057.1| DNA-binding protein HU [Thermosynechococcus elongatus BP-1]
 gi|22295994|dbj|BAC09819.1| DNA-binding protein HU [Thermosynechococcus elongatus BP-1]
          Length = 111

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 17/72 (23%), Positives = 38/72 (52%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
          +++K     ++    EI ++  +GE + +  F  F  +++ +R GRN +T ++++I    
Sbjct: 23 VTKKQVEAIISATVEEIMEAVAKGEKVTLVGFGAFERRERKAREGRNPKTKEKMQIPATN 82

Query: 80 VVVFKASSILKK 91
          V  F A  + K+
Sbjct: 83 VPAFSAGKLFKE 94


>gi|327312706|ref|YP_004328143.1| DNA-binding protein HU-beta [Prevotella denticola F0289]
 gi|326945003|gb|AEA20888.1| DNA-binding protein HU-beta [Prevotella denticola F0289]
          Length = 91

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 40/71 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+   GLS+ D+ + +      I  + V G+ +++  F TF V ++ +  G
Sbjct: 1  MNKTELIEKIAAGAGLSKADAKKALDATTEAIKGALVAGDKVQLVGFGTFAVNERPAHEG 60

Query: 65 RNLQTNQEVKI 75
           N  T Q+++I
Sbjct: 61 INPATKQKIQI 71


>gi|258542723|ref|YP_003188156.1| histone-like DNA-binding protein HU [Acetobacter pasteurianus IFO
          3283-01]
 gi|329114677|ref|ZP_08243436.1| DNA-binding protein [Acetobacter pomorum DM001]
 gi|256633801|dbj|BAH99776.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-01]
 gi|256636860|dbj|BAI02829.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-03]
 gi|256639913|dbj|BAI05875.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-07]
 gi|256642969|dbj|BAI08924.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-22]
 gi|256646024|dbj|BAI11972.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-26]
 gi|256649077|dbj|BAI15018.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-32]
 gi|256652064|dbj|BAI17998.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-01-42C]
 gi|256655121|dbj|BAI21048.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-12]
 gi|326696157|gb|EGE47839.1| DNA-binding protein [Acetobacter pomorum DM001]
          Length = 95

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 43/93 (46%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M K + + +LV ++++   L +  +   V  +F  I  +    + +++  F TF    + 
Sbjct: 1  MEKPLNKQELVSAVAEAVDLPKAKAGEVVDAVFGAIEKALSTKQEVRLVGFGTFVTATRK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +  GRN +T +E+ I     V FK    LK  +
Sbjct: 61 AAKGRNPRTGEEIDIPASTSVRFKPGKALKDAV 93


>gi|116326536|ref|YP_796459.1| nucleoid DNA-binding protein [Lactococcus lactis subsp. cremoris
          SK11]
 gi|134093293|ref|YP_001098369.1| hypothetical protein pDB0R0p15 [Lactococcus lactis subsp. lactis
          bv. diacetylactis]
 gi|116108903|gb|ABJ74028.1| nucleoid DNA-binding protein [Lactococcus lactis subsp. cremoris
          SK11]
 gi|133712501|gb|ABO37108.1| unknown [Lactococcus lactis subsp. lactis bv. diacetylactis]
          Length = 103

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 7/96 (7%)

Query: 5  ITRSDLVKSISKEFG-------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          + + +L K+IS++ G       L+  +S + V  +   I +  V+   I++  F TF  K
Sbjct: 2  VNKKELAKAISEKSGNIMKKHPLTIYESKKVVDAITASITELLVQDGKIQMIDFGTFEKK 61

Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           + SR G N Q  + ++I  + V  FKA   LK+ +
Sbjct: 62 TRASRGGFNPQVGERIQIPEKTVPTFKAGKGLKEAV 97


>gi|19704153|ref|NP_603715.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum
          ATCC 25586]
 gi|254303834|ref|ZP_04971192.1| DNA-binding protein HU [Fusobacterium nucleatum subsp.
          polymorphum ATCC 10953]
 gi|296328641|ref|ZP_06871158.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum
          ATCC 23726]
 gi|19714367|gb|AAL95014.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum
          ATCC 25586]
 gi|148324026|gb|EDK89276.1| DNA-binding protein HU [Fusobacterium nucleatum subsp.
          polymorphum ATCC 10953]
 gi|296154240|gb|EFG95041.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum
          ATCC 23726]
          Length = 91

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 37/66 (56%)

Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80
          +R ++ + V  +F+ I    + GE + I ++    + ++  R+GRN +T +EVKI  R+ 
Sbjct: 18 TRTEAEKKVDIIFDSIEKILLDGENLSIINWGKLEIVERAPRLGRNPKTGEEVKIGKRKS 77

Query: 81 VVFKAS 86
          V F+  
Sbjct: 78 VKFRPG 83


>gi|150010105|ref|YP_001304848.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC
          8503]
 gi|255012635|ref|ZP_05284761.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_7]
 gi|301308155|ref|ZP_07214109.1| DNA-binding protein HU [Bacteroides sp. 20_3]
 gi|149938529|gb|ABR45226.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC
          8503]
 gi|300833625|gb|EFK64241.1| DNA-binding protein HU [Bacteroides sp. 20_3]
          Length = 95

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRV 63
          + R +LVK+++ +  +++ ++ RFV   + E    A+  + ++ +  F T    ++  R+
Sbjct: 1  MNRRELVKTLADKLSVTQAEAMRFVQA-WEETTTEALESDGSLMLLGFGTLSAWEQTERI 59

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +      I  R+ V FK   +L K++
Sbjct: 60 GRNPKNGVAYMIRARKSVKFKPGKLLLKQL 89


>gi|283783178|ref|YP_003373932.1| DNA-binding protein HU [Gardnerella vaginalis 409-05]
 gi|283441069|gb|ADB13535.1| DNA-binding protein HU [Gardnerella vaginalis 409-05]
          Length = 93

 Score = 39.3 bits (90), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 44/87 (50%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +SDLV  I+++  L++  +   V    +   ++   GE +K++   +    ++  R GRN
Sbjct: 5  KSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEALQSGEGLKLTGLFSAERVKRAERTGRN 64

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           +T + +KI     V   A S+LKK +
Sbjct: 65 PRTGETIKIPASYGVRISAGSLLKKAV 91


>gi|284029180|ref|YP_003379111.1| histone family protein DNA-binding protein [Kribbella flavida DSM
          17836]
 gi|283808473|gb|ADB30312.1| histone family protein DNA-binding protein [Kribbella flavida DSM
          17836]
          Length = 97

 Score = 39.3 bits (90), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/94 (21%), Positives = 44/94 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R++LV  ++ + G+ R  + + +  L + + ++  +G+ + ++   +     +  R G
Sbjct: 1  MNRNELVAGVAAKAGIPRNQAEKVLDALGDVVTEAVHKGDKVSLTGLLSIERVLRAPRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN QT + + I     V     S LK     D+R
Sbjct: 61 RNPQTGEPLSIPAGYSVRLSCGSRLKAAARGDLR 94


>gi|120403129|ref|YP_952958.1| histone family protein DNA-binding protein [Mycobacterium
          vanbaalenii PYR-1]
 gi|119955947|gb|ABM12952.1| bacterial nucleoid protein Hbs [Mycobacterium vanbaalenii PYR-1]
          Length = 212

 Score = 39.3 bits (90), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +GE++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTEKLGSDRRQATAAVENVVDTIVRAVHKGESVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + VK+ P  V  F+  +  K
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFK 86


>gi|148260981|ref|YP_001235108.1| histone family protein DNA-binding protein [Acidiphilium cryptum
          JF-5]
 gi|326404379|ref|YP_004284461.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301]
 gi|146402662|gb|ABQ31189.1| histone family protein DNA-binding protein [Acidiphilium cryptum
          JF-5]
 gi|325051241|dbj|BAJ81579.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301]
          Length = 89

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 35/69 (50%)

Query: 25 STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84
          + R  T L   I     +     + SF TF V++  +R G N +T +E+K+   + V FK
Sbjct: 21 ANRAATDLMEAIVKELKKNGKFTLPSFGTFTVRKTKARKGVNPRTGEEIKVKAGKTVRFK 80

Query: 85 ASSILKKRI 93
          AS  LKK +
Sbjct: 81 ASPSLKKMV 89


>gi|194246520|ref|YP_002004159.1| Bacterial nucleoid DNA-binding protein [Candidatus Phytoplasma
          mali]
 gi|193806877|emb|CAP18306.1| Bacterial nucleoid DNA-binding protein [Candidatus Phytoplasma
          mali]
          Length = 96

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 45/82 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + + +K +S +   + K+  + +  + + I  + ++ E I I+ F TF VK +  R G
Sbjct: 1  MNKIEFIKQLSDKLETTEKEGKKIINAVIDVIRINLLQNEKILITGFGTFCVKTRSEREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          ++ +T + +KI  +++  FK S
Sbjct: 61 KHPKTREIIKIPAKKIPSFKMS 82


>gi|71907345|ref|YP_284932.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB]
 gi|71846966|gb|AAZ46462.1| Histone-like bacterial DNA-binding protein [Dechloromonas
          aromatica RCB]
          Length = 90

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ SI+ +  +S+  + R +      I  +   G+++ +  F TF+V ++ +R G
Sbjct: 1  MNKTDLIDSIAAQADISKAAAGRALDAAVESIKGALKAGDSVSLIGFGTFYVGERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + ++I   +   F+    LK
Sbjct: 61 RNPRTGKTLEIKAAKQPKFRPGKGLK 86


>gi|39938529|ref|NP_950295.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
 gi|39938880|ref|NP_950646.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
 gi|39721638|dbj|BAD04128.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
          OY-M]
 gi|39721989|dbj|BAD04479.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
          OY-M]
          Length = 96

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGSRV 63
          +T+ +L+K I++    S   +  F  +  N +  + +  E + +SS    F +K + +  
Sbjct: 1  MTKKELIKKIAEVNKTSISKTEEFYNSFENTLIKAIISNEEVSLSSKIGKFKLKSRKAYT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T +++KI  + VV FK S  +K
Sbjct: 61 GRNPKTRKKLKIPAKTVVTFKLSKTIK 87


>gi|330992041|ref|ZP_08315990.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1]
 gi|329761062|gb|EGG77557.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1]
          Length = 91

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          +DLV  I+     S+ D+ + +  L   +  +A  G+ I + +F  F VK+  +R GRN 
Sbjct: 4  ADLVDHIATTTDTSKTDTRKVLDALVEAMTAAAKAGDEITLPNFGKFKVKEVAAREGRNP 63

Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95
           T   ++I   R + F  +  LK  + D
Sbjct: 64 ATGAAIQIAASRKLAFTPAKALKDSLND 91


>gi|315644375|ref|ZP_07897515.1| histone family protein DNA-binding protein [Paenibacillus vortex
          V453]
 gi|315280252|gb|EFU43544.1| histone family protein DNA-binding protein [Paenibacillus vortex
          V453]
          Length = 61

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 29/50 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          + ++DL+ +IS + GL++KD    +     EI D+   G+ +++  F TF
Sbjct: 1  MNKTDLINNISGKSGLTKKDVENVLNGFLGEITDALANGDKVQLIGFGTF 50


>gi|297559169|ref|YP_003678143.1| histone family protein DNA-binding protein [Nocardiopsis
          dassonvillei subsp. dassonvillei DSM 43111]
 gi|296843617|gb|ADH65637.1| histone family protein DNA-binding protein [Nocardiopsis
          dassonvillei subsp. dassonvillei DSM 43111]
          Length = 93

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+ +IS   G  +K +T  V  + + I  +   G+ + I+ F  F   ++ +R  
Sbjct: 1  MNKRDLIDAISDRLG-DKKTATEAVNAVLDTIQATVASGDKVAITGFGVFEKSERAARTA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN  T   + +    V  F+A +  K  +  D
Sbjct: 60 RNPATGATINVPASFVPKFRAGADFKALVNGD 91


>gi|326445430|ref|ZP_08220164.1| putative histone-like DNA-binding protein [Streptomyces
          clavuligerus ATCC 27064]
          Length = 130

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+ +++ + G SRK +   V  + + I  + V GE + ++ F +F    + +R  
Sbjct: 1  MNKAQLINAVADKMG-SRKQAADAVEHVLDTIVRTVVAGERVSVTGFGSFEKVSRPARYA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + V++    +  F+A    K
Sbjct: 60 RNPQTGERVRVKKSSMPRFRAGQGFK 85


>gi|332973006|gb|EGK10945.1| integration host factor beta subunit [Psychrobacter sp.
          1501(2011)]
          Length = 99

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 7/99 (7%)

Query: 1  MSKTITRSDLVKSISKEFGLSRK----DSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          M++ I +SDL++ +S       +    D+ R +  L +E     +    I++  F TF +
Sbjct: 1  MTEVINKSDLIQDVSARCDYISETEVDDAVREIIELLSE---KLIENNRIEVRGFGTFCL 57

Query: 57 KQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            + +R GRN +T + V +  + +  FK    L++ + D
Sbjct: 58 HHREARQGRNPKTGEMVMVPQKSIPHFKPGKALREGVND 96


>gi|188534268|ref|YP_001908065.1| integration host factor subunit beta [Erwinia tasmaniensis
          Et1/99]
 gi|226709794|sp|B2VC76|IHFB_ERWT9 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|188029310|emb|CAO97187.1| Integration host factor beta-subunit (IHF-beta) [Erwinia
          tasmaniensis Et1/99]
          Length = 95

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +   GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLAGQQSHIPAKVVEDAVKEMLEHMATTLSEGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V+++ + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89


>gi|169630373|ref|YP_001704022.1| DNA-binding protein HU [Mycobacterium abscessus ATCC 19977]
 gi|169242340|emb|CAM63368.1| DNA-binding protein HU homolog (Histone-like) [Mycobacterium
          abscessus]
          Length = 207

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +GE++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVEHVVDTIVRTVHKGESVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + VK+ P  V  F+  +  K
Sbjct: 61 RNPRTGETVKVKPTSVPTFRPGAQFK 86


>gi|71907279|ref|YP_284866.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB]
 gi|71846900|gb|AAZ46396.1| Histone-like bacterial DNA-binding protein [Dechloromonas
          aromatica RCB]
          Length = 73

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 36/66 (54%)

Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88
          V  L ++I  + V G  +++  F +F +  +  R+GRN +T  +V +  + V  FKA   
Sbjct: 5  VKELLDQIGQTLVAGNRVEVRGFGSFGLTYRPPRLGRNPKTGDKVAVPGKYVPHFKAGKE 64

Query: 89 LKKRIM 94
          L++ ++
Sbjct: 65 LRELVL 70


>gi|288926971|ref|ZP_06420867.1| DNA-binding protein HU [Prevotella buccae D17]
 gi|288336254|gb|EFC74639.1| DNA-binding protein HU [Prevotella buccae D17]
          Length = 493

 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 43/83 (51%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          ++L +++S +  +S+ D+  FV  +F  + D   + + +KI SF TF +     R   ++
Sbjct: 12 TELARTLSSKHNMSQADAENFVRLMFAVVGDGLEQEKLVKIKSFGTFKMGSVKDRESVDV 71

Query: 68 QTNQEVKIDPRRVVVFKASSILK 90
           T + + I+ R  + F   + L+
Sbjct: 72 NTGERIVIEGRNKINFTPDNALR 94


>gi|261878950|ref|ZP_06005377.1| DNA-binding protein HU [Prevotella bergensis DSM 17361]
 gi|270334461|gb|EFA45247.1| DNA-binding protein HU [Prevotella bergensis DSM 17361]
          Length = 91

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LVK I+   GLS  D+ + +      I ++ V G+ +++  F TF  K++ +R G
Sbjct: 1  MNKTELVKKIADATGLSAADAKKALDATTCAIKEALVDGDKVQLIGFGTFSTKERPARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  + ++++I  + VV F   S  ++ +
Sbjct: 61 VNPSSGEKIQIAAKTVVKFNPGSEFEEAV 89


>gi|332091766|gb|EGI96845.1| integration host factor subunit beta [Shigella dysenteriae
          155-74]
 gi|332093460|gb|EGI98518.1| integration host factor subunit beta [Shigella boydii 3594-74]
 gi|332758997|gb|EGJ89307.1| integration host factor subunit beta [Shigella flexneri 4343-70]
 gi|332767859|gb|EGJ98049.1| ihfB [Shigella flexneri 2930-71]
          Length = 66

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          +   +  +  +GE I+I  F +F +  +  R GRN +T  +V+++ + V  FK    L+ 
Sbjct: 1  MLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRD 60

Query: 92 R 92
          R
Sbjct: 61 R 61


>gi|317484455|ref|ZP_07943367.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
 gi|316924279|gb|EFV45453.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
          Length = 110

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 42/86 (48%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++DLV  I+    +++  + R +  +   + +       + ++ F TF  + +  R G
Sbjct: 20  MTKADLVAQIAARANMTKAAAERSLNAMLESVQEMLAEDGKLTLTGFGTFVAETRQERQG 79

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILK 90
           RN +T   + I   +VV F+   +LK
Sbjct: 80  RNPRTGDVITIAASKVVRFRPGKMLK 105


>gi|229817265|ref|ZP_04447547.1| hypothetical protein BIFANG_02525 [Bifidobacterium angulatum DSM
          20098]
 gi|229785054|gb|EEP21168.1| hypothetical protein BIFANG_02525 [Bifidobacterium angulatum DSM
          20098]
          Length = 94

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 46/89 (51%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +SDLV  I+++  L++  +   V    +   ++   GE +K++   +    ++ +R GRN
Sbjct: 5  KSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTGRN 64

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           +T + ++I     V   A S+LKK + +
Sbjct: 65 PRTGETIEIPATYGVRISAGSLLKKAVTE 93


>gi|297191835|ref|ZP_06909233.1| DNA-binding protein HU 2 [Streptomyces pristinaespiralis ATCC
          25486]
 gi|197722028|gb|EDY65936.1| DNA-binding protein HU 2 [Streptomyces pristinaespiralis ATCC
          25486]
          Length = 216

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1  MNKAQLVEAIADKLG-GRQQAADAVDAVLDAIVRATVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + V++    V  F+A    K
Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85


>gi|24373428|ref|NP_717471.1| HU family DNA-binding protein [Shewanella oneidensis MR-1]
 gi|24347706|gb|AAN54915.1|AE015629_9 DNA-binding protein, HU family [Shewanella oneidensis MR-1]
          Length = 91

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L++ I+     S+  +   V  +  +I  +   GE + +  F TF ++    + G
Sbjct: 1  MNKAQLIQRIATSLEQSQASTKPVVEQILQQIHIALSEGEKVFLPLFGTFELRYHLPKSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I       FKA++ LK+ I
Sbjct: 61 RNPQTGEAIEIAGFNQPSFKAATALKQAI 89


>gi|39938999|ref|NP_950765.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
 gi|39722108|dbj|BAD04598.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
          OY-M]
          Length = 96

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGSRV 63
          + + +L+K I++    S   +  F  +  N +  + +  E + +SS    F +K + + +
Sbjct: 1  MNKKELIKKIAEVNKTSISKTEEFYNSFENTLIKAIISNEEVSLSSKIGKFKLKPRKAYI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T +++KI  + VV FK S  +K
Sbjct: 61 GRNPKTKKKLKIPAKTVVTFKLSKTIK 87


>gi|19918954|dbj|BAB88690.1| histone-like HU protein HBl [Bifidobacterium longum biovar
          Longum]
          Length = 93

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 46/89 (51%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +SDLV  I+++  L++  +   V    +   ++   GE +K++   +    ++ +R GRN
Sbjct: 5  KSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRPARTGRN 64

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           +T +++ I     V   A S+LKK + +
Sbjct: 65 PRTGEQIDIPASYGVRISAGSLLKKAVTE 93


>gi|222102443|ref|YP_002539482.1| HNS-type DNA binding protein [Agrobacterium vitis S4]
 gi|221739044|gb|ACM39777.1| HNS-type DNA binding protein [Agrobacterium vitis S4]
          Length = 92

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 39/85 (45%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+   GL++  +   V ++F  I D+A       I  F  F VK    R GR
Sbjct: 3  TTNEIADKIAANNGLTKVQAKGIVESVFKAIADAAGSDAETSIPGFGKFKVKTSPEREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90
          N  T +++ +   + + F  +  LK
Sbjct: 63 NPATGEKMTVAASKKLTFAPAKALK 87


>gi|328885294|emb|CCA58533.1| Integration host factor beta subunit [Streptomyces venezuelae
          ATCC 10712]
          Length = 234

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1  MNKAQLVEAIADKMG-GRQQAAEAVDHVLDAIVRAVVGGDRVSVTGFGSFEKVDRPARYA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + V++    V  F+A    K
Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85


>gi|292487831|ref|YP_003530706.1| integration host factor subunit beta [Erwinia amylovora CFBP1430]
 gi|292899058|ref|YP_003538427.1| integration host factor subunit beta [Erwinia amylovora ATCC
          49946]
 gi|291198906|emb|CBJ46016.1| integration host factor beta-subunit [Erwinia amylovora ATCC
          49946]
 gi|291553253|emb|CBA20298.1| Integration host factor beta-subunit (IHF-beta) [Erwinia
          amylovora CFBP1430]
 gi|312171952|emb|CBX80209.1| Integration host factor beta-subunit (IHF-beta) [Erwinia
          amylovora ATCC BAA-2158]
          Length = 95

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +   GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLAGQQSHIQAKVVEDAVKEMLEHMATTLSEGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V+++ + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89


>gi|254383272|ref|ZP_04998625.1| histone protein DNA-binding protein [Streptomyces sp. Mg1]
 gi|194342170|gb|EDX23136.1| histone protein DNA-binding protein [Streptomyces sp. Mg1]
          Length = 224

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1  MNKAQLVEAIADKLG-GRQQAADAVDAVLDAIVRATVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + V++    V  F+A    K
Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85


>gi|168699941|ref|ZP_02732218.1| probable DNA-binding protein HU [Gemmata obscuriglobus UQM 2246]
          Length = 167

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 9/98 (9%)

Query: 5  ITRSDLVKSIS---------KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55
          +T+ ++VK+I           +  L++  +   V   F  I ++ V    I++ +F  F 
Sbjct: 1  MTKKEIVKTICDRANKKNLIPKHNLTQLATKEIVQWTFEAIIETLVSEGRIELRNFGVFE 60

Query: 56 VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          VKQ+  R  RN +T   V+++ + VV F+    +++++
Sbjct: 61 VKQRKPRKARNPRTGAAVEVEAKNVVTFQPGKTMEEQV 98


>gi|320333649|ref|YP_004170360.1| histone family protein DNA-binding protein [Deinococcus
           maricopensis DSM 21211]
 gi|319754938|gb|ADV66695.1| histone family protein DNA-binding protein [Deinococcus
           maricopensis DSM 21211]
          Length = 122

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 19/89 (21%), Positives = 46/89 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           I ++ ++  ++ +  L++K +   V T+ + + ++   G+++ +    TF V +  +R G
Sbjct: 34  IAKTQIIDLVADQTSLNKKQAAEAVATMLDVVVEALRDGKSVGLPGLGTFSVAKTAARTG 93

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
               T++ + I   + V FK +S LK  +
Sbjct: 94  VKPGTSERITIPAGKKVRFKVASTLKTNL 122


>gi|198283418|ref|YP_002219739.1| histone family protein DNA-binding protein [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218667634|ref|YP_002426011.1| DNA-binding protein HU family protein [Acidithiobacillus
          ferrooxidans ATCC 23270]
 gi|198247939|gb|ACH83532.1| histone family protein DNA-binding protein [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218519847|gb|ACK80433.1| DNA-binding protein HU family protein [Acidithiobacillus
          ferrooxidans ATCC 23270]
          Length = 91

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 39/82 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + + V ++++   +S+ D+ +      + +         I    F TF V +K +R G
Sbjct: 1  MNKLEFVAALAQHGAMSKVDAEKMFQVFRHTLETELPTAGKIVFPGFCTFEVAEKPARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN  T QE+ I  ++ + FKA 
Sbjct: 61 RNPATGQEIDIPAKKSIKFKAG 82


>gi|117920062|ref|YP_869254.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3]
 gi|117612394|gb|ABK47848.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3]
          Length = 91

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L++ I+     S+  +   V  +  +I  +   GE + +  F TF ++    + G
Sbjct: 1  MNKAQLIQRIATSLEQSQASTRPVVEQILQQIHIALSEGEKVFLPQFGTFELRYHLPKSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I       FKA++ LK+ I
Sbjct: 61 RNPQTGETMEIAGFNQPSFKAATALKQAI 89


>gi|323343529|ref|ZP_08083756.1| DNA-binding protein HU [Prevotella oralis ATCC 33269]
 gi|323095348|gb|EFZ37922.1| DNA-binding protein HU [Prevotella oralis ATCC 33269]
          Length = 114

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           ++K + +++L++ I+   GLS+  + + +      I  + V G+ +++  F TF V ++ 
Sbjct: 20  INKIMNKTELIEKIAAGSGLSKAAAKKALDATTEAIKAALVAGDKVQLIGFGTFSVTERP 79

Query: 61  SRVGRN-LQTNQEVKIDPRRVVVFKASSIL 89
           +RVG N  +  Q++ I  ++V  FK  + L
Sbjct: 80  ARVGVNPAKKGQKINIPAKKVAKFKVGAEL 109


>gi|3228564|gb|AAD03319.1| histone-like protein HLm [Listeria monocytogenes]
          Length = 83

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 8/88 (9%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           ++DLV S+++   LS+K  T+    L++++       + + +  F  F V+++ +R GR
Sbjct: 3  NKTDLVNSVAELADLSKK--TQRKQQLYSKLF------KLLHLLGFGNFEVRERAARKGR 54

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93
          N  T +E+ I   +V  FK    LK+ +
Sbjct: 55 NPATKEEIDIPASKVPAFKPGKALKEAV 82


>gi|88596497|ref|ZP_01099734.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88191338|gb|EAQ95310.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 84-25]
          Length = 61

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 35/61 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+T     + + I D   +G++I    F TF  +++ +R  
Sbjct: 1  MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60

Query: 65 R 65
          R
Sbjct: 61 R 61


>gi|257451617|ref|ZP_05616916.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
 gi|257466933|ref|ZP_05631244.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563]
 gi|315918076|ref|ZP_07914316.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563]
 gi|317058182|ref|ZP_07922667.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
 gi|313683858|gb|EFS20693.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
 gi|313691951|gb|EFS28786.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563]
          Length = 91

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 17/73 (23%), Positives = 41/73 (56%)

Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80
          S+ ++ R + T+F+ + +  +   +  I+++    V ++  R+GRN +T +EVKI  R+ 
Sbjct: 18 SKAEAERNIETIFSLMEECIINDGSFSITNWGKLEVVERAPRLGRNPKTGEEVKIPSRKS 77

Query: 81 VVFKASSILKKRI 93
          + F+      +++
Sbjct: 78 IKFRPGKAFLEKL 90


>gi|325860232|ref|ZP_08173357.1| DNA-binding protein HU-beta [Prevotella denticola CRIS 18C-A]
 gi|325482319|gb|EGC85327.1| DNA-binding protein HU-beta [Prevotella denticola CRIS 18C-A]
          Length = 91

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 40/71 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+   GLS+ D+ + +      I  + V G+ +++  F TF V ++ +  G
Sbjct: 1  MNKTELIEKIAAGAGLSKADAKKALDATTEAIKGALVVGDKVQLVGFGTFAVNERPAHEG 60

Query: 65 RNLQTNQEVKI 75
           N  T Q+++I
Sbjct: 61 INPATKQKIQI 71


>gi|293363573|ref|ZP_06610329.1| DNA-binding protein HU [Mycoplasma alligatoris A21JP2]
 gi|292552922|gb|EFF41676.1| DNA-binding protein HU [Mycoplasma alligatoris A21JP2]
          Length = 92

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 44/87 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V  I+ + G + K+  +F       + +  +  E +++S+  TF  + K  R  
Sbjct: 1  MTKKEFVMKIANKTGYTVKEVNKFFDAFVFYLKEELIGEEKVQLSTLGTFSTQIKRKRET 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          +N  T + + I  RRVV F+ S  L++
Sbjct: 61 KNAFTGENISIPERRVVRFRPSKYLRE 87


>gi|119025570|ref|YP_909415.1| DNA-binding protein HB1 [Bifidobacterium adolescentis ATCC 15703]
 gi|154487028|ref|ZP_02028435.1| hypothetical protein BIFADO_00866 [Bifidobacterium adolescentis
          L2-32]
 gi|171743350|ref|ZP_02919157.1| hypothetical protein BIFDEN_02481 [Bifidobacterium dentium ATCC
          27678]
 gi|212716910|ref|ZP_03325038.1| hypothetical protein BIFCAT_01854 [Bifidobacterium catenulatum
          DSM 16992]
 gi|225350744|ref|ZP_03741767.1| hypothetical protein BIFPSEUDO_02313 [Bifidobacterium
          pseudocatenulatum DSM 20438]
 gi|283455679|ref|YP_003360243.1| DNA-binding protein HU [Bifidobacterium dentium Bd1]
 gi|306823294|ref|ZP_07456670.1| DNA-binding protein HU [Bifidobacterium dentium ATCC 27679]
 gi|309801902|ref|ZP_07696017.1| DNA-binding protein HB1 [Bifidobacterium dentium JCVIHMP022]
 gi|118765154|dbj|BAF39333.1| DNA-binding protein HB1 [Bifidobacterium adolescentis ATCC 15703]
 gi|154084891|gb|EDN83936.1| hypothetical protein BIFADO_00866 [Bifidobacterium adolescentis
          L2-32]
 gi|171278964|gb|EDT46625.1| hypothetical protein BIFDEN_02481 [Bifidobacterium dentium ATCC
          27678]
 gi|212660195|gb|EEB20770.1| hypothetical protein BIFCAT_01854 [Bifidobacterium catenulatum
          DSM 16992]
 gi|225158200|gb|EEG71442.1| hypothetical protein BIFPSEUDO_02313 [Bifidobacterium
          pseudocatenulatum DSM 20438]
 gi|283102313|gb|ADB09419.1| DNA-binding protein HU [Bifidobacterium dentium Bd1]
 gi|304553926|gb|EFM41837.1| DNA-binding protein HU [Bifidobacterium dentium ATCC 27679]
 gi|308221458|gb|EFO77755.1| DNA-binding protein HB1 [Bifidobacterium dentium JCVIHMP022]
          Length = 93

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 45/87 (51%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +SDLV  I+++  L++  +   V    +   ++   GE +K++   +    ++ +R GRN
Sbjct: 5  KSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMQSGEGLKLTGLFSAERVKRAARTGRN 64

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           +T + ++I     V   A S+LKK +
Sbjct: 65 PRTGETIEIPATYGVRISAGSLLKKAV 91


>gi|167753149|ref|ZP_02425276.1| hypothetical protein ALIPUT_01420 [Alistipes putredinis DSM
          17216]
 gi|167659463|gb|EDS03593.1| hypothetical protein ALIPUT_01420 [Alistipes putredinis DSM
          17216]
          Length = 90

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 37/82 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G  +      V      I  S  +   + +  F +F VK++  +V 
Sbjct: 1  MTKADIVSEIAKSTGAEKVQVQAIVEAFMESIKGSLAQNNNVYLRGFGSFIVKKRAKKVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTITIPAHNIPAFKPA 82


>gi|156088029|ref|XP_001611421.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154798675|gb|EDO07853.1| conserved hypothetical protein [Babesia bovis]
          Length = 175

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 36/78 (46%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+T+  L+  I++   +++KD    V      I       + + I+ F  FH   +G R
Sbjct: 77  ETVTKKQLISEIAQTTNMTQKDVGIVVDEFLKSIVKHLGENKEVSIAKFGLFHNSLRGPR 136

Query: 63  VGRNLQTNQEVKIDPRRV 80
           + +NLQT +     P  V
Sbjct: 137 LMKNLQTGEMYTAKPVYV 154


>gi|329936762|ref|ZP_08286469.1| histone-like DNA binding protein [Streptomyces griseoaurantiacus
          M045]
 gi|329303992|gb|EGG47875.1| histone-like DNA binding protein [Streptomyces griseoaurantiacus
          M045]
          Length = 222

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1  MNKAQLVEAIADKMG-GRQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + V++    V  F+A    K
Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85


>gi|150006582|ref|YP_001301326.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482]
 gi|212691238|ref|ZP_03299366.1| hypothetical protein BACDOR_00729 [Bacteroides dorei DSM 17855]
 gi|237712330|ref|ZP_04542811.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA]
 gi|237726466|ref|ZP_04556947.1| DNA-binding protein HU [Bacteroides sp. D4]
 gi|254881516|ref|ZP_05254226.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA]
 gi|265752041|ref|ZP_06087834.1| DNA-binding protein HU [Bacteroides sp. 3_1_33FAA]
 gi|294775457|ref|ZP_06740970.1| DNA-binding protein HU [Bacteroides vulgatus PC510]
 gi|319642901|ref|ZP_07997537.1| DNA-binding protein HU [Bacteroides sp. 3_1_40A]
 gi|149935006|gb|ABR41704.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482]
 gi|212666470|gb|EEB27042.1| hypothetical protein BACDOR_00729 [Bacteroides dorei DSM 17855]
 gi|229434992|gb|EEO45069.1| DNA-binding protein HU [Bacteroides dorei 5_1_36/D4]
 gi|229453651|gb|EEO59372.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA]
 gi|254834309|gb|EET14618.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA]
 gi|263236833|gb|EEZ22303.1| DNA-binding protein HU [Bacteroides sp. 3_1_33FAA]
 gi|294450698|gb|EFG19185.1| DNA-binding protein HU [Bacteroides vulgatus PC510]
 gi|317385449|gb|EFV66392.1| DNA-binding protein HU [Bacteroides sp. 3_1_40A]
          Length = 91

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 40/82 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +      +    + + DS  + E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEITKNTGIDKVTVLTTLEAFMDTVKDSLSKEENVYLRGFGSFVVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82


>gi|256838928|ref|ZP_05544438.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
 gi|256739847|gb|EEU53171.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
          Length = 95

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRV 63
          + R +LVK+++ +  +++ ++ RFV   + E    A+  + ++ +  F T    ++  R+
Sbjct: 1  MNRRELVKTLADKLSVTQVEAMRFVQA-WEETTTEALESDGSLMLLGFGTLSAWKQTERI 59

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +      I  R+ V FK   +L KR+
Sbjct: 60 GRNPRNGVAYIIRARKSVKFKPGKLLLKRL 89


>gi|326381558|ref|ZP_08203252.1| histone family protein DNA-binding protein [Gordonia
          neofelifaecis NRRL B-59395]
 gi|326199805|gb|EGD56985.1| histone family protein DNA-binding protein [Gordonia
          neofelifaecis NRRL B-59395]
          Length = 239

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ ++K     RK +T FV  + + I  +  +GE++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIEELTKRLDADRKTATNFVEQVIDTIVRAVNKGESVTITGFGVFEKRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + VK+    +  F+  +  K
Sbjct: 61 RNPRTGETVKVKATSIPAFRPGAQFK 86


>gi|291457432|ref|ZP_06596822.1| DNA-binding protein HU [Bifidobacterium breve DSM 20213]
 gi|291381267|gb|EFE88785.1| DNA-binding protein HU [Bifidobacterium breve DSM 20213]
          Length = 93

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 45/89 (50%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +SDLV  I+++  L++  +   V    +   ++   GE +K++   +    ++ +R GRN
Sbjct: 5  KSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTGRN 64

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           +T + + I     V   A S+LKK + +
Sbjct: 65 PRTGETINIPASYGVRISAGSLLKKAVTE 93


>gi|310767180|gb|ADP12130.1| integration host factor subunit beta [Erwinia sp. Ejp617]
          Length = 95

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +   GE I++  F +F +  +  R 
Sbjct: 1  MTKSELIERLACQQPHIQAKVLEDAVKEMLEHMATTLSEGERIEVRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V+++ + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89


>gi|91205964|ref|YP_538319.1| DNA-binding protein HU [Rickettsia bellii RML369-C]
 gi|157826672|ref|YP_001495736.1| DNA-binding protein HU [Rickettsia bellii OSU 85-389]
 gi|91069508|gb|ABE05230.1| DNA-binding protein HU [Rickettsia bellii RML369-C]
 gi|157801976|gb|ABV78699.1| DNA-binding protein HU [Rickettsia bellii OSU 85-389]
          Length = 108

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 38/72 (52%)

Query: 20  LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
            ++ D+ + +  +   I  +     ++ I+ F +F ++ + SR GRN +T  ++ I   +
Sbjct: 32  FTKADAEKALNWVLESIISATKHQHSVNITGFGSFGIQSRKSREGRNPKTGAKMTIPAYK 91

Query: 80  VVVFKASSILKK 91
             VFKA S LK+
Sbjct: 92  QPVFKAGSKLKE 103


>gi|261337946|ref|ZP_05965830.1| DNA-binding protein HU [Bifidobacterium gallicum DSM 20093]
 gi|270277441|gb|EFA23295.1| DNA-binding protein HU [Bifidobacterium gallicum DSM 20093]
          Length = 93

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 45/89 (50%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +SDLV  I+++  L++  +   V    +   ++   GE +K++   +     + +R GRN
Sbjct: 5  KSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVPRAARTGRN 64

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           +T + ++I     V   A S+LKK + +
Sbjct: 65 PRTGETIEIPATYGVRISAGSLLKKAVTE 93


>gi|255327422|ref|ZP_05368496.1| HU_IHF family transcriptional regulator [Rothia mucilaginosa ATCC
          25296]
 gi|255295702|gb|EET75045.1| HU_IHF family transcriptional regulator [Rothia mucilaginosa ATCC
          25296]
          Length = 94

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 40/87 (45%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          R++LV  ++++ G S+      +  +F     S  +GE I I  +       + +R GRN
Sbjct: 5  RTELVAEVAEKSGKSQATVNAVLDAVFQVFESSVSKGEKITIPGWMAIERTDRAARTGRN 64

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
           QT + ++I     V   A S LK  +
Sbjct: 65 PQTGETIQIPAGHGVKLTAGSKLKAAV 91


>gi|218259892|ref|ZP_03475424.1| hypothetical protein PRABACTJOHN_01083 [Parabacteroides johnsonii
          DSM 18315]
 gi|218224857|gb|EEC97507.1| hypothetical protein PRABACTJOHN_01083 [Parabacteroides johnsonii
          DSM 18315]
          Length = 96

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 18/85 (21%), Positives = 42/85 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++++++  GL ++ + + +    + + ++    E I +  F T   + +  R+ 
Sbjct: 1  MNKAELIEALAQRSGLQKQKAKKLLEAYVDIVTEAMSHNEEIVLVGFGTLIPRPQTERLA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN +T   V I  R  V FK    L
Sbjct: 61 RNPKTGTPVMIPARTTVKFKPGKYL 85


>gi|19704359|ref|NP_603921.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum
          ATCC 25586]
 gi|296327419|ref|ZP_06869966.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum
          ATCC 23726]
 gi|19714609|gb|AAL95220.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum
          ATCC 25586]
 gi|296155432|gb|EFG96202.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum
          ATCC 23726]
          Length = 102

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 16/67 (23%), Positives = 38/67 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V + +++  L  KDS R V      + ++ ++G+ ++   F ++ VK++ +R  
Sbjct: 1  MTKKEFVNAFAEKGELKIKDSERLVNAFLETVENALLKGDGVRFIGFGSWEVKERSAREV 60

Query: 65 RNLQTNQ 71
          +N QT +
Sbjct: 61 KNPQTGK 67


>gi|167836518|ref|ZP_02463401.1| histone family protein DNA-binding protein [Burkholderia
          thailandensis MSMB43]
          Length = 64

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 29/61 (47%)

Query: 33 FNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           + I  +  R EA+++  F  F   Q+ +R GRN  T +E+ I     V F A   LK  
Sbjct: 1  MDAITGAVSRDEAVQLVGFGAFSRGQRSARTGRNPTTGEEIAIAAANTVRFAAGKALKDA 60

Query: 93 I 93
          +
Sbjct: 61 V 61


>gi|124007134|sp|Q1RHD4|DBH_RICBR RecName: Full=DNA-binding protein HU
          Length = 101

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 38/72 (52%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
           ++ D+ + +  +   I  +     ++ I+ F +F ++ + SR GRN +T  ++ I   +
Sbjct: 25 FTKADAEKALNWVLESIISATKHQHSVNITGFGSFGIQSRKSREGRNPKTGAKMTIPAYK 84

Query: 80 VVVFKASSILKK 91
            VFKA S LK+
Sbjct: 85 QPVFKAGSKLKE 96


>gi|302537148|ref|ZP_07289490.1| predicted protein [Streptomyces sp. C]
 gi|302446043|gb|EFL17859.1| predicted protein [Streptomyces sp. C]
          Length = 248

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+ +   V  + + +  + V G+ + ++ F +F    + +R  
Sbjct: 19  VNKAQLVEAIADKLG-GRQQAADAVDAVLDAMVRAVVAGDRVSVTGFGSFEKVDRPARYA 77

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILK 90
           RN QT + V++    V  F+A    K
Sbjct: 78  RNPQTGERVRVKKTSVPRFRAGQGFK 103


>gi|294155859|ref|YP_003560243.1| DNA-binding protein HU [Mycoplasma crocodyli MP145]
 gi|291600263|gb|ADE19759.1| DNA-binding protein HU [Mycoplasma crocodyli MP145]
          Length = 93

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + +  I+   G + K+  +F  T    + +  +  E +++SS  TF  + K  R  
Sbjct: 1  MTKKEFIMKIANRTGYTVKEVNKFFDTFVFFLKEELIGEEKVQLSSLGTFSTQIKHKRHT 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +N  T +++ I  +RVV F  S  L++ I
Sbjct: 61 KNAFTGEDLFIPEKRVVKFTPSKYLRELI 89


>gi|313159797|gb|EFR59153.1| DNA-binding protein HU [Alistipes sp. HGB5]
          Length = 90

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 38/82 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +      V    + I  S      + +  F +F VK++  +V 
Sbjct: 1  MTKADIVSEIAKSTGVEKVQVQAIVEAFMDSIKTSLTNKNNVYLRGFGSFIVKKRAKKVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTITIPEHNIPAFKPA 82


>gi|237737338|ref|ZP_04567819.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817]
 gi|229421200|gb|EEO36247.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817]
          Length = 90

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 16/89 (17%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + ++  +++  L++K++ + +      + +S V+G+ +    +  + V ++ +R  
Sbjct: 1  MTKKEFIELYAEKGNLTKKEAEKNINLFLESVEESLVKGDEVTFVGWGKWEVVERAAREV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R+ Q+ + +K+  ++ V FK   +L  +I
Sbjct: 61 RSPQSKEIIKVPAKKAVKFKVGKLLADKI 89


>gi|228911465|ref|ZP_04075263.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
 gi|228848211|gb|EEM93067.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
          Length = 84

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 39/71 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K +  +  L++  ++  V  +   I  +    E +++ SF TF V+++ +R G
Sbjct: 1  MNKSELIKQVIIQSELTKPQASLVVDAVLESIQHALQNREHVQLLSFGTFEVRERAAREG 60

Query: 65 RNLQTNQEVKI 75
          RN  T + + I
Sbjct: 61 RNPHTGEALTI 71


>gi|237740573|ref|ZP_04571054.1| DNA-binding protein HU [Fusobacterium sp. 2_1_31]
 gi|262067567|ref|ZP_06027179.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693]
 gi|294782350|ref|ZP_06747676.1| DNA-binding protein HU [Fusobacterium sp. 1_1_41FAA]
 gi|229422590|gb|EEO37637.1| DNA-binding protein HU [Fusobacterium sp. 2_1_31]
 gi|291378682|gb|EFE86200.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693]
 gi|294480991|gb|EFG28766.1| DNA-binding protein HU [Fusobacterium sp. 1_1_41FAA]
          Length = 92

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 36/66 (54%)

Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80
          +R ++ + V  +F  +  + + GE I I ++    V ++  R+GRN +T +EV I  R+ 
Sbjct: 18 TRTEAEKKVDIIFETMEKTLLDGEDISIINWGKLEVVERAPRLGRNPKTGEEVNIGERKS 77

Query: 81 VVFKAS 86
          V F+  
Sbjct: 78 VKFRPG 83


>gi|332884203|gb|EGK04471.1| hypothetical protein HMPREF9456_00798 [Dysgonomonas mossii DSM
          22836]
          Length = 445

 Score = 38.1 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 50/93 (53%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ ++  DL+  ++K+  +++K++  F+  L   I ++    E++KI  F TF + +  
Sbjct: 1  MNERLSLQDLIDLLAKKQEITKKEAEVFLRELIAVISETIESNESVKIKDFGTFKLVKVN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +R   ++ T + ++I     + F    +LK+ I
Sbjct: 61 ARKSVDVNTGEAIEIAAHYKLSFTPDKLLKEAI 93


>gi|15610123|ref|NP_217502.1| DNA-binding protein HU [Mycobacterium tuberculosis H37Rv]
 gi|15842542|ref|NP_337579.1| DNA binding protein HU, putative [Mycobacterium tuberculosis
          CDC1551]
 gi|31794162|ref|NP_856655.1| DNA-binding protein HU [Mycobacterium bovis AF2122/97]
 gi|148662836|ref|YP_001284359.1| DNA-binding protein hupB [Mycobacterium tuberculosis H37Ra]
 gi|148824176|ref|YP_001288930.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
          tuberculosis F11]
 gi|167969993|ref|ZP_02552270.1| DNA-binding protein HU [Mycobacterium tuberculosis H37Ra]
 gi|215404970|ref|ZP_03417151.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis 02_1987]
 gi|215412830|ref|ZP_03421542.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis
          94_M4241A]
 gi|215428438|ref|ZP_03426357.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis T92]
 gi|215431936|ref|ZP_03429855.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis EAS054]
 gi|215447253|ref|ZP_03434005.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis T85]
 gi|218754746|ref|ZP_03533542.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis GM 1503]
 gi|219559018|ref|ZP_03538094.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis T17]
 gi|253797921|ref|YP_003030922.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          KZN 1435]
 gi|254233069|ref|ZP_04926396.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
          tuberculosis C]
 gi|254365619|ref|ZP_04981664.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
          tuberculosis str. Haarlem]
 gi|254552063|ref|ZP_05142510.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis '98-R604
          INH-RIF-EM']
 gi|260188010|ref|ZP_05765484.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis CPHL_A]
 gi|260202128|ref|ZP_05769619.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis T46]
 gi|289444550|ref|ZP_06434294.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          T46]
 gi|289448658|ref|ZP_06438402.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          CPHL_A]
 gi|289553224|ref|ZP_06442434.1| predicted protein [Mycobacterium tuberculosis KZN 605]
 gi|289571185|ref|ZP_06451412.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          T17]
 gi|289746790|ref|ZP_06506168.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
          tuberculosis 02_1987]
 gi|289751663|ref|ZP_06511041.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          T92]
 gi|289755102|ref|ZP_06514480.1| predicted protein [Mycobacterium tuberculosis EAS054]
 gi|289759111|ref|ZP_06518489.1| predicted protein [Mycobacterium tuberculosis T85]
 gi|289763166|ref|ZP_06522544.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
          tuberculosis GM 1503]
 gi|294993927|ref|ZP_06799618.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis 210]
 gi|297635611|ref|ZP_06953391.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis KZN
          4207]
 gi|297732609|ref|ZP_06961727.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis KZN
          R506]
 gi|298526456|ref|ZP_07013865.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
          tuberculosis 94_M4241A]
 gi|306777279|ref|ZP_07415616.1| hypothetical protein TMAG_01192 [Mycobacterium tuberculosis
          SUMu001]
 gi|306781190|ref|ZP_07419527.1| hypothetical protein TMBG_03136 [Mycobacterium tuberculosis
          SUMu002]
 gi|306785829|ref|ZP_07424151.1| hypothetical protein TMCG_02241 [Mycobacterium tuberculosis
          SUMu003]
 gi|306794680|ref|ZP_07432982.1| hypothetical protein TMEG_02256 [Mycobacterium tuberculosis
          SUMu005]
 gi|306798923|ref|ZP_07437225.1| hypothetical protein TMFG_00187 [Mycobacterium tuberculosis
          SUMu006]
 gi|306804768|ref|ZP_07441436.1| hypothetical protein TMHG_02196 [Mycobacterium tuberculosis
          SUMu008]
 gi|306808962|ref|ZP_07445630.1| hypothetical protein TMGG_02527 [Mycobacterium tuberculosis
          SUMu007]
 gi|306969060|ref|ZP_07481721.1| hypothetical protein TMIG_02492 [Mycobacterium tuberculosis
          SUMu009]
 gi|306973397|ref|ZP_07486058.1| hypothetical protein TMJG_01980 [Mycobacterium tuberculosis
          SUMu010]
 gi|307081105|ref|ZP_07490275.1| hypothetical protein TMKG_03422 [Mycobacterium tuberculosis
          SUMu011]
 gi|307085709|ref|ZP_07494822.1| hypothetical protein TMLG_01487 [Mycobacterium tuberculosis
          SUMu012]
 gi|313659941|ref|ZP_07816821.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis KZN
          V2475]
 gi|6014921|sp|P95109|DBH_MYCTU RecName: Full=DNA-binding protein HU homolog; AltName: Full=21
          kDa laminin-2-binding protein; AltName: Full=28 kDa
          iron-regulated protein; Short=Irep-28; AltName:
          Full=Histone-like protein; Short=Hlp
 gi|38605697|sp|Q9XB18|DBH_MYCBO RecName: Full=DNA-binding protein HU homolog; AltName:
          Full=Histone-like protein; Short=Hlp
 gi|1694845|emb|CAB05427.1| PROBABLE DNA-BINDING PROTEIN HU HOMOLOG HUPB (HISTONE-LIKE
          PROTEIN) (HLP) (21-KDA LAMININ-2-BINDING PROTEIN)
          [Mycobacterium tuberculosis H37Rv]
 gi|13882853|gb|AAK47393.1| DNA binding protein HU, putative [Mycobacterium tuberculosis
          CDC1551]
 gi|31619757|emb|CAD96697.1| PROBABLE DNA-BINDING PROTEIN HU HOMOLOG HUPB (HISTONE-LIKE
          PROTEIN) (HLP) (21-KDA LAMININ-2-BINDING PROTEIN)
          [Mycobacterium bovis AF2122/97]
 gi|124602128|gb|EAY61138.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
          tuberculosis C]
 gi|134151132|gb|EBA43177.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
          tuberculosis str. Haarlem]
 gi|148506988|gb|ABQ74797.1| DNA-binding protein hupB [Mycobacterium tuberculosis H37Ra]
 gi|148722703|gb|ABR07328.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
          tuberculosis F11]
 gi|253319424|gb|ACT24027.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          KZN 1435]
 gi|289417469|gb|EFD14709.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          T46]
 gi|289421616|gb|EFD18817.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          CPHL_A]
 gi|289437856|gb|EFD20349.1| predicted protein [Mycobacterium tuberculosis KZN 605]
 gi|289544939|gb|EFD48587.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          T17]
 gi|289687318|gb|EFD54806.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
          tuberculosis 02_1987]
 gi|289692250|gb|EFD59679.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          T92]
 gi|289695689|gb|EFD63118.1| predicted protein [Mycobacterium tuberculosis EAS054]
 gi|289710672|gb|EFD74688.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
          tuberculosis GM 1503]
 gi|289714675|gb|EFD78687.1| predicted protein [Mycobacterium tuberculosis T85]
 gi|298496250|gb|EFI31544.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
          tuberculosis 94_M4241A]
 gi|308214329|gb|EFO73728.1| hypothetical protein TMAG_01192 [Mycobacterium tuberculosis
          SUMu001]
 gi|308325973|gb|EFP14824.1| hypothetical protein TMBG_03136 [Mycobacterium tuberculosis
          SUMu002]
 gi|308329504|gb|EFP18355.1| hypothetical protein TMCG_02241 [Mycobacterium tuberculosis
          SUMu003]
 gi|308337000|gb|EFP25851.1| hypothetical protein TMEG_02256 [Mycobacterium tuberculosis
          SUMu005]
 gi|308340814|gb|EFP29665.1| hypothetical protein TMFG_00187 [Mycobacterium tuberculosis
          SUMu006]
 gi|308344677|gb|EFP33528.1| hypothetical protein TMGG_02527 [Mycobacterium tuberculosis
          SUMu007]
 gi|308348627|gb|EFP37478.1| hypothetical protein TMHG_02196 [Mycobacterium tuberculosis
          SUMu008]
 gi|308353353|gb|EFP42204.1| hypothetical protein TMIG_02492 [Mycobacterium tuberculosis
          SUMu009]
 gi|308357197|gb|EFP46048.1| hypothetical protein TMJG_01980 [Mycobacterium tuberculosis
          SUMu010]
 gi|308361151|gb|EFP50002.1| hypothetical protein TMKG_03422 [Mycobacterium tuberculosis
          SUMu011]
 gi|308364744|gb|EFP53595.1| hypothetical protein TMLG_01487 [Mycobacterium tuberculosis
          SUMu012]
 gi|323718365|gb|EGB27539.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          CDC1551A]
 gi|326904600|gb|EGE51533.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          W-148]
 gi|328457696|gb|AEB03119.1| hypothetical protein TBSG_00990 [Mycobacterium tuberculosis KZN
          4207]
          Length = 214

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|15618331|ref|NP_224616.1| integration host factor Alpha [Chlamydophila pneumoniae CWL029]
 gi|15835949|ref|NP_300473.1| integration host factor alpha [Chlamydophila pneumoniae J138]
 gi|16752623|ref|NP_444887.1| integration host factor beta-subunit, putative [Chlamydophila
          pneumoniae AR39]
 gi|33241765|ref|NP_876706.1| integration host factor beta chain [Chlamydophila pneumoniae
          TW-183]
 gi|9789718|sp|Q9Z8C7|DBH_CHLPN RecName: Full=Probable DNA-binding protein HU
 gi|4376697|gb|AAD18560.1| Integration Host Factor Alpha [Chlamydophila pneumoniae CWL029]
 gi|7189266|gb|AAF38192.1| integration host factor beta-subunit, putative [Chlamydophila
          pneumoniae AR39]
 gi|8978788|dbj|BAA98624.1| integration host factor alpha [Chlamydophila pneumoniae J138]
 gi|33236274|gb|AAP98363.1| integration host factor beta chain [Chlamydophila pneumoniae
          TW-183]
 gi|269303292|gb|ACZ33392.1| DNA-binding protein HU [Chlamydophila pneumoniae LPCoLN]
          Length = 100

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+  L+ +IS++  +        +    +++ D+ V+G+ ++   F    V ++  +V
Sbjct: 3  TMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVKGDRLEFRDFGVLQVVERKPKV 62

Query: 64 GRNLQTNQ-EVKIDPRRVVVFKASSILKKRI 93
          GRN +     + I  RR V F     +K+ I
Sbjct: 63 GRNPKNAAVPIHIPARRAVKFTPGKRMKRLI 93


>gi|295101480|emb|CBK99025.1| Bacterial nucleoid DNA-binding protein [Faecalibacterium
          prausnitzii L2-6]
          Length = 102

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/89 (21%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +TRS ++++++++ G +       +  LF++I D     E + I+ F  F ++ +  +  
Sbjct: 1  MTRSQMIETVARKTGFTEAQVETTMDALFDQIADCLRADEKVTIAGFGRFEMRPRKPKAY 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T    +++   +  FKAS   K+++
Sbjct: 61 TNPKTKVSSRLESTSIPGFKASGRFKQKL 89


>gi|291515896|emb|CBK65106.1| Bacterial nucleoid DNA-binding protein [Alistipes shahii WAL
          8301]
          Length = 90

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 38/82 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +      V      I  S  +   + +  F +F VK++  +V 
Sbjct: 1  MTKADIVSEIAKSTGVEKVQVQAIVEAFMESIKTSLTQKNNVYLRGFGSFIVKKRAKKVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTITIPEHNIPAFKPA 82


>gi|260206310|ref|ZP_05773801.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis K85]
 gi|289575693|ref|ZP_06455920.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          K85]
 gi|289540124|gb|EFD44702.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          K85]
          Length = 214

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|189461333|ref|ZP_03010118.1| hypothetical protein BACCOP_01983 [Bacteroides coprocola DSM
          17136]
 gi|189431862|gb|EDV00847.1| hypothetical protein BACCOP_01983 [Bacteroides coprocola DSM
          17136]
          Length = 371

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 21/93 (22%), Positives = 46/93 (49%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS   T+ DL   +++   ++  D+  FV TLF  + +S +  + +KI    TF + +  
Sbjct: 1  MSDKFTQQDLADLLAQRHEMNPADAEAFVRTLFALVEESVISDKYVKIKGLGTFKLIEVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +R   ++ T + ++I     + F   S +++ +
Sbjct: 61 ARESIDINTGERIEIREHSRISFTPDSTMRETV 93


>gi|5419919|emb|CAB46493.1| histone-like protein [Mycobacterium bovis]
          Length = 205

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|121638867|ref|YP_979091.1| putative DNA-binding protein HU homolog hupB [Mycobacterium bovis
          BCG str. Pasteur 1173P2]
 gi|224991359|ref|YP_002646048.1| putative DNA-binding protein HU homolog [Mycobacterium bovis BCG
          str. Tokyo 172]
 gi|4996103|dbj|BAA78330.1| MDP1 [Mycobacterium bovis]
 gi|121494515|emb|CAL72996.1| Probable DNA-binding protein HU homolog hupB [Mycobacterium bovis
          BCG str. Pasteur 1173P2]
 gi|224774474|dbj|BAH27280.1| putative DNA-binding protein HU homolog [Mycobacterium bovis BCG
          str. Tokyo 172]
 gi|264669723|gb|ACY72210.1| laminin-binding histone-like protein [Mycobacterium bovis BCG]
          Length = 205

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|15827894|ref|NP_302157.1| histone-like protein [Mycobacterium leprae TN]
 gi|221230371|ref|YP_002503787.1| putative histone-like protein [Mycobacterium leprae Br4923]
 gi|6014920|sp|O33125|DBH_MYCLE RecName: Full=DNA-binding protein HU homolog; AltName: Full=21
          kDa laminin-2-binding protein; AltName:
          Full=Histone-like protein; Short=Hlp
 gi|2414560|emb|CAB16449.1| histone-like DNA binding protein [Mycobacterium leprae]
 gi|6009551|dbj|BAA84958.1| 21-kDa laminin-2-binding protein [Mycobacterium leprae]
 gi|13093447|emb|CAC30636.1| probable histone-like protein [Mycobacterium leprae]
 gi|219933478|emb|CAR71778.1| probable histone-like protein [Mycobacterium leprae Br4923]
          Length = 200

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVAGAQR 94


>gi|308272437|emb|CBX29041.1| DNA-binding protein HU-beta [uncultured Desulfobacterium sp.]
          Length = 90

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 7/93 (7%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTL--FNEICDSAVRGEAIKIS--SFATFHVKQKG 60
          +T+++LV +I+ +  +++   T  V  L  F +    A++ +  K++   F TF   ++ 
Sbjct: 1  MTKAELVDAIAADAKITK---TAAVAALDSFTKNVTKALKSKDGKVTLVGFGTFSKAKRV 57

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +R GRN QT  E+KI  R VV  KA   LK+ +
Sbjct: 58 ARKGRNPQTGAEIKIKARNVVKIKAGKKLKEAV 90


>gi|325268537|ref|ZP_08135167.1| DNA-binding protein HU-beta [Prevotella multiformis DSM 16608]
 gi|324989065|gb|EGC21018.1| DNA-binding protein HU-beta [Prevotella multiformis DSM 16608]
          Length = 91

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 17/71 (23%), Positives = 40/71 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+   GLS+ D+ + +      I  + V G+ +++  F TF V ++ +  G
Sbjct: 1  MNKTELIEKIAASAGLSKADAKKALDATTEAIKGALVAGDKVQLVGFGTFAVNERPAHEG 60

Query: 65 RNLQTNQEVKI 75
           N  T ++++I
Sbjct: 61 INPATKEKIQI 71


>gi|259908918|ref|YP_002649274.1| integration host factor subunit beta [Erwinia pyrifoliae Ep1/96]
 gi|224964540|emb|CAX56050.1| Integration host factor beta-subunit (IHF-beta) [Erwinia
          pyrifoliae Ep1/96]
 gi|283478914|emb|CAY74830.1| Integration host factor beta-subunit (IHF-beta) [Erwinia
          pyrifoliae DSM 12163]
          Length = 95

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +   GE I++  F +F +  +  R 
Sbjct: 1  MTKSELIERLAGQQSHIQAKVVEDAVKEMLEHMATTLSEGERIEVRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T  +V+++ + V  FK    L+ R
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89


>gi|291302449|ref|YP_003513727.1| histone family protein DNA-binding protein [Stackebrandtia
          nassauensis DSM 44728]
 gi|290571669|gb|ADD44634.1| histone family protein DNA-binding protein [Stackebrandtia
          nassauensis DSM 44728]
          Length = 185

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 18/92 (19%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ + ++ +  G  RK + + +  +  EI  +  +GE +  + F  F  +Q+ +R+ 
Sbjct: 1  MNKAEFIDALVEHLG-DRKTALKALDAMLEEIQRAVSKGEKVSFAGFGVFEKRQRAARMA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T + V++    V  F+     K+ +  +
Sbjct: 60 RNPRTGEAVRVKKTVVPAFRPGQGFKELVTGE 91


>gi|167763121|ref|ZP_02435248.1| hypothetical protein BACSTE_01490 [Bacteroides stercoris ATCC
          43183]
 gi|167699461|gb|EDS16040.1| hypothetical protein BACSTE_01490 [Bacteroides stercoris ATCC
          43183]
          Length = 376

 Score = 38.1 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 44/93 (47%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +   DL+  ++++ G+S+K++  FV   F  I ++  + + +KI     F +    
Sbjct: 1  MNEKLNIQDLIDLLAEKHGMSKKNADSFVKEFFQLIEEALEKDKYVKIKGLGAFKLIDVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T +  +I     V F     LK  I
Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDII 93


>gi|290957139|ref|YP_003488321.1| histone-like DNA binding protein [Streptomyces scabiei 87.22]
 gi|260646665|emb|CBG69762.1| putative histone-like DNA binding protein [Streptomyces scabiei
          87.22]
          Length = 217

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1  MNKAQLVEAIADKVG-GRQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + V++    V  F+A    K
Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85


>gi|257437801|ref|ZP_05613556.1| DNA binding protein HU [Faecalibacterium prausnitzii A2-165]
 gi|257199724|gb|EEU98008.1| DNA binding protein HU [Faecalibacterium prausnitzii A2-165]
          Length = 103

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 19/89 (21%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +TRS ++++++++ G +       +  LF++I D     E + I+ F  F ++ +  +  
Sbjct: 1  MTRSQMIETVARKTGFTEAQVETTMDALFDQIADCLRADEKVTIAGFGRFEMRPRKPKAY 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T    +++   +  FKAS   K+++
Sbjct: 61 TNPKTKVSSRLESTSIPGFKASGRFKQKL 89


>gi|323345507|ref|ZP_08085730.1| hypothetical protein HMPREF0663_12266 [Prevotella oralis ATCC
          33269]
 gi|323093621|gb|EFZ36199.1| hypothetical protein HMPREF0663_12266 [Prevotella oralis ATCC
          33269]
          Length = 441

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 40/80 (50%)

Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV 73
          I K++ LS+K++  FV+ +F  I ++    + +KI    TF V     R   N+ T +  
Sbjct: 13 IQKKYSLSQKEADNFVSQMFEVISEALHTEKQVKIKGLGTFKVMSVSPRESVNVNTGERF 72

Query: 74 KIDPRRVVVFKASSILKKRI 93
           I+ R  + F   + ++ R+
Sbjct: 73 VIEGRDKISFTPETSMRDRV 92


>gi|301167343|emb|CBW26925.1| DNA-binding protein HU-beta [Bacteriovorax marinus SJ]
          Length = 92

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 5  ITRSDLVKSI--SKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + + +L+++I  +KE   +++KD+  F+ T  + I  +  +GE + +  F +F   ++ +
Sbjct: 1  MNKKELLETILKNKELNHMTKKDAELFLNTTIDTIKKTVKKGEDVSLIGFGSFSKVRRAA 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          R G N  T +++KI  + +  FK     K
Sbjct: 61 RAGVNPATGEKIKIKAKNLPKFKPGKAWK 89


>gi|62632025|gb|AAX89117.1| laminin-binding protein [Mycobacterium ulcerans]
          Length = 220

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|118617556|ref|YP_905888.1| DNA-binding protein HU HupB-like protein [Mycobacterium ulcerans
          Agy99]
 gi|62632019|gb|AAX89114.1| laminin-binding protein [Mycobacterium ulcerans]
 gi|118569666|gb|ABL04417.1| DNA-binding protein Hu HupB-like protein [Mycobacterium ulcerans
          Agy99]
          Length = 229

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|62632023|gb|AAX89116.1| laminin-binding protein [Mycobacterium ulcerans]
          Length = 229

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|58979383|gb|AAW83356.1| DNA-binding protein HU [Campylobacter coli]
          Length = 96

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 42/80 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+      + + I D   +G+++    F TF   ++ +R  
Sbjct: 1  MTKADFISQVAQTAGLTKKDAAAATDAVISTITDVLAKGDSVSFIGFGTFSTAERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFK 84
          R   T + +K+   RV  FK
Sbjct: 61 RVPSTGKTIKVPATRVAKFK 80


>gi|156097106|ref|XP_001614586.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148803460|gb|EDL44859.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 188

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/101 (21%), Positives = 51/101 (50%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           +S+ IT+  +++ +S E   S+K   + +  +F+ I       E I I  F  ++   + 
Sbjct: 54  ISQAITKKQIIEEVSMETKESKKTVEKIMNGIFDNIYKHLENNEKIYIHKFGMYYNIFRK 113

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
            R  +N++T +++ I+   +  FK S I +  I  +++ ++
Sbjct: 114 KRCIKNMRTKEDIHIESSHMPHFKFSKIFRDLIKVNVKAKR 154


>gi|62632021|gb|AAX89115.1| laminin-binding protein [Mycobacterium ulcerans]
          Length = 229

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + VK+ P  V  F+  +  K
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFK 86


>gi|260175099|ref|ZP_05761511.1| putative histone-like DNA-binding protein [Bacteroides sp. D2]
 gi|315923329|ref|ZP_07919569.1| HU family DNA-binding protein [Bacteroides sp. D2]
 gi|313697204|gb|EFS34039.1| HU family DNA-binding protein [Bacteroides sp. D2]
          Length = 88

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 19/83 (22%), Positives = 45/83 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K ++ +  LS +++   +  + + I ++  +GE I +  F +F ++++  R G
Sbjct: 1  MNKTELIKEVALKGKLSFREAGYALDVIIDTITETMQKGENITLVGFGSFVIQERKERNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASS 87
           N  T   + I  +R V F+  S
Sbjct: 61 HNPSTGGSMVIPAKRQVKFRPGS 83


>gi|116254928|ref|YP_770763.1| putative DNA-binding protein HU-alpha [Rhizobium leguminosarum
          bv. viciae 3841]
 gi|115259576|emb|CAK11544.1| putative DNA-binding protein Hu-alpha [Rhizobium leguminosarum
          bv. viciae 3841]
          Length = 92

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 36/85 (42%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+ E  L++      V  +   I ++AV G    +  F  F VK    R  R
Sbjct: 3  TTNEIADKIAGEHSLTKAQGKAIVEAVIASITEAAVAGNETSLPGFGKFKVKATPEREAR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90
          N  T   +K+   + + F  +  LK
Sbjct: 63 NPSTGATIKVAAAKKLAFTPAKALK 87


>gi|308372312|ref|ZP_07428191.2| LOW QUALITY PROTEIN: hypothetical protein TMDG_00186
          [Mycobacterium tuberculosis SUMu004]
 gi|308333643|gb|EFP22494.1| LOW QUALITY PROTEIN: hypothetical protein TMDG_00186
          [Mycobacterium tuberculosis SUMu004]
          Length = 109

 Score = 38.1 bits (87), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|224282721|ref|ZP_03646043.1| DNA-binding protein HB1 [Bifidobacterium bifidum NCIMB 41171]
 gi|310287180|ref|YP_003938438.1| DNA-binding protein HU [Bifidobacterium bifidum S17]
 gi|311064042|ref|YP_003970767.1| DNA-binding protein [Bifidobacterium bifidum PRL2010]
 gi|313139879|ref|ZP_07802072.1| DNA-binding protein HB1 [Bifidobacterium bifidum NCIMB 41171]
 gi|309251116|gb|ADO52864.1| DNA-binding protein HU [Bifidobacterium bifidum S17]
 gi|310866361|gb|ADP35730.1| DNA-binding protein [Bifidobacterium bifidum PRL2010]
 gi|313132389|gb|EFR50006.1| DNA-binding protein HB1 [Bifidobacterium bifidum NCIMB 41171]
          Length = 93

 Score = 38.1 bits (87), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 46/89 (51%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +SDLV  I+++  L++  +   V    +   ++   GE +K++   +    ++ +R GRN
Sbjct: 5  KSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMQSGEGLKLTGLFSAERVKRAARTGRN 64

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           +T + ++I     V   A S+LKK + +
Sbjct: 65 PRTGEIIEIPATYGVRISAGSLLKKAVTE 93


>gi|223937617|ref|ZP_03629520.1| histone family protein DNA-binding protein [bacterium Ellin514]
 gi|223893780|gb|EEF60238.1| histone family protein DNA-binding protein [bacterium Ellin514]
          Length = 95

 Score = 38.1 bits (87), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 22/96 (22%), Positives = 48/96 (50%), Gaps = 6/96 (6%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISSFATFHVKQ 58
          M+K +++S L  +I+ + G+++K +      + + I + A +       +       +  
Sbjct: 1  MAKALSKSQLAAAIADKNGITKKQAVE----ILDHIAELAYKNAKNTFTLPGLGKLVLVN 56

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          + +RVGRN  T +++ I  +RVV F+ +   K  I+
Sbjct: 57 RKARVGRNPATGEQINIPAKRVVKFRVAKAAKDSIL 92


>gi|325914662|ref|ZP_08177003.1| bacterial nucleoid DNA-binding protein [Xanthomonas vesicatoria
          ATCC 35937]
 gi|325539164|gb|EGD10819.1| bacterial nucleoid DNA-binding protein [Xanthomonas vesicatoria
          ATCC 35937]
          Length = 92

 Score = 38.1 bits (87), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 25/50 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          + R DLV+ ++ E  L +  +TR V  LF  I     +G  + IS F  F
Sbjct: 1  MNRKDLVELLAHELDLPKHKTTRLVAMLFEAIVAQLGKGREVNISGFGVF 50


>gi|240168953|ref|ZP_04747612.1| hypothetical protein MkanA1_06550 [Mycobacterium kansasii ATCC
          12478]
          Length = 217

 Score = 38.1 bits (87), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 49/86 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + VK+ P  V  F+  +  K
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFK 86


>gi|118471339|ref|YP_886729.1| DNA-binding protein HU [Mycobacterium smegmatis str. MC2 155]
 gi|14194641|sp|Q9ZHC5|DBH_MYCS2 RecName: Full=DNA-binding protein HU homolog; AltName:
          Full=Histone-like protein; Short=Hlp
 gi|3930569|gb|AAD13809.1| histone-like protein [Mycobacterium smegmatis str. MC2 155]
 gi|67515139|gb|AAY68087.1| histone-like protein [Mycobacterium smegmatis str. MC2 155]
 gi|118172626|gb|ABK73522.1| DNA-binding protein HU [Mycobacterium smegmatis str. MC2 155]
          Length = 208

 Score = 37.7 bits (86), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++ + G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTTKMGTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + VK+ P  V  F+  +  K  I
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVI 89


>gi|154490160|ref|ZP_02030421.1| hypothetical protein PARMER_00392 [Parabacteroides merdae ATCC
          43184]
 gi|154089052|gb|EDN88096.1| hypothetical protein PARMER_00392 [Parabacteroides merdae ATCC
          43184]
          Length = 96

 Score = 37.7 bits (86), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 18/85 (21%), Positives = 42/85 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++++++  GL ++ + + +    + + ++    E I +  F T   + +  R+ 
Sbjct: 1  MNKAELIEALAQRSGLQKQKAKKLLEAYVDIVTEAMSHNEEIVLIGFGTLIPRPQTERLA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN +T   V I  R  V FK    L
Sbjct: 61 RNPKTGTPVMIPARTTVKFKPGKYL 85


>gi|311896283|dbj|BAJ28691.1| putative DNA-binding protein Hu [Kitasatospora setae KM-6054]
          Length = 93

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 3/89 (3%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RG-EAIKISSFATFHVKQKGSR 62
          + RS+LV ++++   ++RKD+   V   F EI    V +G E + I  F TF    + +R
Sbjct: 1  MNRSELVAALAERAEVTRKDADA-VLAAFAEITGEVVAKGDEKVTIPGFLTFERTLRAAR 59

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKK 91
            RN QT + ++I     V   A S LK+
Sbjct: 60 TARNPQTGEPIQIAEGFSVKVSAGSKLKE 88


>gi|29840141|ref|NP_829247.1| integration host factor beta-subunit, putative [Chlamydophila
          caviae GPIC]
 gi|62184997|ref|YP_219782.1| integration host factor alpha-subunit [Chlamydophila abortus
          S26/3]
 gi|89898437|ref|YP_515547.1| DNA-binding protein HU [Chlamydophila felis Fe/C-56]
 gi|332287322|ref|YP_004422223.1| integration host factor alpha-subunit [Chlamydophila psittaci
          6BC]
 gi|29834489|gb|AAP05125.1| integration host factor beta-subunit, putative [Chlamydophila
          caviae GPIC]
 gi|62148064|emb|CAH63818.1| integration host factor alpha-subunit [Chlamydophila abortus
          S26/3]
 gi|89331809|dbj|BAE81402.1| DNA-binding protein HU [Chlamydophila felis Fe/C-56]
 gi|313847906|emb|CBY16901.1| integration host factor alpha-subunit [Chlamydophila psittaci
          RD1]
 gi|325507160|gb|ADZ18798.1| integration host factor alpha-subunit [Chlamydophila psittaci
          6BC]
 gi|328914565|gb|AEB55398.1| integration host factor, beta subunit, putative [Chlamydophila
          psittaci 6BC]
          Length = 100

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+  L+ +IS++  +        +    +++ D+ V+G+ ++   F    V ++  +V
Sbjct: 3  TMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVKGDRLEFRDFGVLQVVERKPKV 62

Query: 64 GRNLQ-TNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +     + I  RR V F     +K+ I
Sbjct: 63 GRNPKNATVPIHIPARRAVKFTPGKRMKRLI 93


>gi|319763435|ref|YP_004127372.1| histone family protein DNA-binding protein [Alicycliphilus
           denitrificans BC]
 gi|330824318|ref|YP_004387621.1| histone family protein DNA-binding protein [Alicycliphilus
           denitrificans K601]
 gi|317117996|gb|ADV00485.1| histone family protein DNA-binding protein [Alicycliphilus
           denitrificans BC]
 gi|329309690|gb|AEB84105.1| histone family protein DNA-binding protein [Alicycliphilus
           denitrificans K601]
          Length = 111

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 46/100 (46%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + R+ LV+ ++ +  LS+  +   + TL   I  +  +G+ +++  F TF   ++ +R G
Sbjct: 12  MNRAQLVEILASKNDLSKTAANAVLETLTETIQTAVKKGDTVQLVGFGTFKSAKRAARTG 71

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           +N  T   +KI    V  F   +  K  +      RK  K
Sbjct: 72  KNPATGAALKIPASTVPKFVPGAKFKAVVDPKAAKRKAGK 111


>gi|29829226|ref|NP_823860.1| histone-like DNA-binding protein [Streptomyces avermitilis
          MA-4680]
 gi|29606332|dbj|BAC70395.1| putative histone-like DNA-binding protein [Streptomyces
          avermitilis MA-4680]
          Length = 217

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1  MNKAQLVEAIADKVG-GRQQAADAVDAVLDAIVRAVVGGDRVSVTGFGSFEKVDRPARYA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + V++    V  F+A    K
Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85


>gi|62632027|gb|AAX89118.1| laminin-binding protein [Mycobacterium ulcerans]
          Length = 220

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|183981741|ref|YP_001850032.1| DNA-binding protein HU, HupB [Mycobacterium marinum M]
 gi|62632029|gb|AAX89119.1| laminin-binding protein [Mycobacterium ulcerans]
 gi|183175067|gb|ACC40177.1| DNA-binding protein Hu, HupB [Mycobacterium marinum M]
          Length = 220

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|62632031|gb|AAX89120.1| laminin-binding protein [Mycobacterium ulcerans]
          Length = 211

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|296114688|ref|ZP_06833340.1| putative DNA binding protein [Gluconacetobacter hansenii ATCC
          23769]
 gi|295978784|gb|EFG85510.1| putative DNA binding protein [Gluconacetobacter hansenii ATCC
          23769]
          Length = 91

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 43/88 (48%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          +DLV  I+     S+ ++ + +  L   +  +A  G+ I + +F  F VK+  +R GRN 
Sbjct: 4  ADLVDHIATTTDTSKTETRKVLDALIETMTVAAKAGDEITLPNFGKFKVKEVAAREGRNP 63

Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95
           T   ++I   R + F  +  LK  + D
Sbjct: 64 ATGATIQIAASRKLAFTPAKALKDSLND 91


>gi|251773075|gb|EES53631.1| histone family protein DNA-binding protein [Leptospirillum
          ferrodiazotrophum]
          Length = 84

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          GE + +  F TF   ++ +R GRN +T Q +KI   RV  F A    K
Sbjct: 33 GERVTLPGFGTFSTAKRKARTGRNPRTGQAIKIPAMRVPKFTAGKAFK 80


>gi|62632033|gb|AAX89121.1| laminin-binding protein [Mycobacterium ulcerans]
          Length = 211

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|222447026|pdb|3C4I|A Chain A, Crystal Structure Analysis Of N Terminal Region
          Containing The Dimerization Domain And Dna Binding
          Domain Of Hu Protein(Histone Like Protein-Dna Binding)
          From Mycobacterium Tuberculosis [h37rv]
 gi|222447027|pdb|3C4I|B Chain B, Crystal Structure Analysis Of N Terminal Region
          Containing The Dimerization Domain And Dna Binding
          Domain Of Hu Protein(Histone Like Protein-Dna Binding)
          From Mycobacterium Tuberculosis [h37rv]
          Length = 99

 Score = 37.7 bits (86), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|167041244|gb|ABZ06000.1| putative bacterial DNA-binding protein [uncultured marine
          microorganism HF4000_005D21]
 gi|167045748|gb|ABZ10394.1| putative bacterial DNA-binding protein [uncultured marine
          bacterium HF4000_APKG3108]
          Length = 103

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ +      + RKD  + +  +  EI ++  R EA++I  F  F    + +R+
Sbjct: 1  MVKSELMQQLCNIHPNILRKDIEKILDIIIFEIIEALYRNEAVEIRGFGRFKTVIRKARI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN + +  ++I  ++ + +K S IL KR+
Sbjct: 61 GRNPKNSTAIQIPAKKAIKWKMSKILFKRL 90


>gi|46446802|ref|YP_008167.1| putative integration host factor [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400443|emb|CAF23892.1| putative integration host factor [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 120

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 13/92 (14%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN--- 66
           L+ SIS++ G+   D    +    ++I D   +GE ++   F  F V ++  ++GRN   
Sbjct: 24  LINSISQDKGIHPNDVRHVIQAFLDKITDCLSQGERLEFREFGVFEVVERKQKIGRNPKN 83

Query: 67  ------LQTNQEVKIDP----RRVVVFKASSI 88
                 +   Q VK  P    R+VV  + S +
Sbjct: 84  AAVPIVIPARQAVKFTPGKKMRQVVEMEESYL 115


>gi|282861336|ref|ZP_06270401.1| histone family protein DNA-binding protein [Streptomyces sp.
          ACTE]
 gi|282563994|gb|EFB69531.1| histone family protein DNA-binding protein [Streptomyces sp.
          ACTE]
          Length = 218

 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1  MNKAQLVEAIADKVG-GRQQAADAVDVVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + V++    V  F+A    K
Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85


>gi|119717520|ref|YP_924485.1| nucleoid protein Hbs [Nocardioides sp. JS614]
 gi|119538181|gb|ABL82798.1| bacterial nucleoid protein Hbs [Nocardioides sp. JS614]
          Length = 202

 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 43/86 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+ + +++  +  +RK +   + ++ + I     +GE + I+ F +F  + + +R  
Sbjct: 1  MNKSEFIDALAARYEGNRKAAAHALESVLDTITREVAKGEKVAITGFGSFEKRVREARWV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT   +K     V  F A + LK
Sbjct: 61 RNPQTGARIKAKKTAVPKFTAGADLK 86


>gi|15604988|ref|NP_219772.1| integration host factor alpha-subunit [Chlamydia trachomatis
          D/UW-3/CX]
 gi|15835156|ref|NP_296915.1| integration host factor beta subunit, putative [Chlamydia
          muridarum Nigg]
 gi|76788989|ref|YP_328075.1| integration host factor alpha-subunit [Chlamydia trachomatis
          A/HAR-13]
 gi|166154478|ref|YP_001654596.1| integration host factor alpha-subunit [Chlamydia trachomatis
          434/Bu]
 gi|166155353|ref|YP_001653608.1| integration host factor alpha-subunit [Chlamydia trachomatis
          L2b/UCH-1/proctitis]
 gi|237802690|ref|YP_002887884.1| integration host factor alpha-subunit [Chlamydia trachomatis
          B/Jali20/OT]
 gi|237804612|ref|YP_002888766.1| integration host factor alpha-subunit [Chlamydia trachomatis
          B/TZ1A828/OT]
 gi|255311068|ref|ZP_05353638.1| integration host factor alpha-subunit [Chlamydia trachomatis
          6276]
 gi|255317369|ref|ZP_05358615.1| integration host factor alpha-subunit [Chlamydia trachomatis
          6276s]
 gi|255348627|ref|ZP_05380634.1| integration host factor alpha-subunit [Chlamydia trachomatis 70]
 gi|255503167|ref|ZP_05381557.1| integration host factor alpha-subunit [Chlamydia trachomatis 70s]
 gi|255506845|ref|ZP_05382484.1| integration host factor alpha-subunit [Chlamydia trachomatis
          D(s)2923]
 gi|270285328|ref|ZP_06194722.1| integration host factor alpha-subunit [Chlamydia muridarum Nigg]
 gi|270289344|ref|ZP_06195646.1| integration host factor alpha-subunit [Chlamydia muridarum Weiss]
 gi|301335738|ref|ZP_07223982.1| integration host factor alpha-subunit [Chlamydia trachomatis
          L2tet1]
 gi|301336725|ref|ZP_07224927.1| integration host factor alpha-subunit [Chlamydia muridarum
          MopnTet14]
 gi|54036943|sp|P64387|DBH_CHLMU RecName: Full=Probable DNA-binding protein HU
 gi|54040776|sp|P64386|DBH_CHLTR RecName: Full=Probable DNA-binding protein HU
 gi|3328679|gb|AAC67860.1| Integration Host Factor Alpha [Chlamydia trachomatis D/UW-3/CX]
 gi|7190578|gb|AAF39378.1| integration host factor beta subunit, putative [Chlamydia
          muridarum Nigg]
 gi|76167519|gb|AAX50527.1| integration host factor alpha-subunit [Chlamydia trachomatis
          A/HAR-13]
 gi|165930466|emb|CAP03959.1| integration host factor alpha-subunit [Chlamydia trachomatis
          434/Bu]
 gi|165931341|emb|CAP06913.1| integration host factor alpha-subunit [Chlamydia trachomatis
          L2b/UCH-1/proctitis]
 gi|231272912|emb|CAX09823.1| integration host factor alpha-subunit [Chlamydia trachomatis
          B/TZ1A828/OT]
 gi|231273924|emb|CAX10716.1| integration host factor alpha-subunit [Chlamydia trachomatis
          B/Jali20/OT]
 gi|289525306|emb|CBJ14782.1| integration host factor alpha-subunit [Chlamydia trachomatis
          Sweden2]
 gi|296434856|gb|ADH17034.1| integration host factor alpha-subunit [Chlamydia trachomatis
          E/150]
 gi|296435783|gb|ADH17957.1| integration host factor alpha-subunit [Chlamydia trachomatis
          G/9768]
 gi|296436708|gb|ADH18878.1| integration host factor alpha-subunit [Chlamydia trachomatis
          G/11222]
 gi|296437643|gb|ADH19804.1| integration host factor alpha-subunit [Chlamydia trachomatis
          G/11074]
 gi|296438576|gb|ADH20729.1| integration host factor alpha-subunit [Chlamydia trachomatis
          E/11023]
 gi|297140142|gb|ADH96900.1| integration host factor alpha-subunit [Chlamydia trachomatis
          G/9301]
 gi|297748397|gb|ADI50943.1| Integration host factor beta-subunit [Chlamydia trachomatis D-EC]
 gi|297749277|gb|ADI51955.1| Integration host factor beta-subunit [Chlamydia trachomatis D-LC]
          Length = 100

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+  L+ +IS++  +        +    +++ D+ V+G+ ++   F    V ++  +V
Sbjct: 3  TMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVQGDRLEFRDFGVLQVVERKPKV 62

Query: 64 GRNLQTNQ-EVKIDPRRVVVFKASSILKKRI 93
          GRN +     + I  RR V F     +K+ I
Sbjct: 63 GRNPKNAAVPIHIPARRAVKFTPGKRMKRLI 93


>gi|27228588|ref|NP_758638.1| DNA binding protein [Pseudomonas resinovorans]
 gi|219857010|ref|YP_002474042.1| DNA binding protein [Pseudomonas sp. CA10]
 gi|26106176|dbj|BAC41616.1| DNA binding protein [Pseudomonas resinovorans]
 gi|219688938|dbj|BAH10029.1| DNA binding protein [Pseudomonas putida]
          Length = 91

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 35/71 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +LVK+I+ E G S+      + +L + + +    G+ + +  F TF   ++  R G
Sbjct: 1  MNRQELVKAIADESGHSQSTVGEVLNSLISTVQNVVAGGDKVSLVGFGTFESTKQAERQG 60

Query: 65 RNLQTNQEVKI 75
          RN  T   + I
Sbjct: 61 RNPSTGAPITI 71


>gi|77166413|ref|YP_344938.1| histone-like DNA-binding protein [Nitrosococcus oceani ATCC
          19707]
 gi|254435865|ref|ZP_05049372.1| DNA-binding protein HU [Nitrosococcus oceani AFC27]
 gi|76884727|gb|ABA59408.1| Histone-like DNA-binding protein [Nitrosococcus oceani ATCC
          19707]
 gi|207088976|gb|EDZ66248.1| DNA-binding protein HU [Nitrosococcus oceani AFC27]
          Length = 94

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  +  +  LS+  + R V  LF  I         + +  F +F V+++ +R G
Sbjct: 1  MNKTELVNFVVLKANLSQATAQRAVNALFQTITGVLSEEGRVNLVGFGSFSVQKRAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          R+ Q+ + + I  +    FK S  LK+
Sbjct: 61 RHPQSGEVIIIQAKSAPTFKPSKALKE 87


>gi|114777026|ref|ZP_01452046.1| histone-like protein [Mariprofundus ferrooxydans PV-1]
 gi|114552547|gb|EAU55007.1| histone-like protein [Mariprofundus ferrooxydans PV-1]
          Length = 90

 Score = 37.7 bits (86), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 30/58 (51%)

Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          I  +   G+A+ +  F TF V ++ +R  RN +T + +++   +   FKA   LK  +
Sbjct: 32 ITGTLANGDAVSLVGFGTFSVAERAARTARNPRTGEAIEVGASKAPKFKAGKALKDAV 89


>gi|167763389|ref|ZP_02435516.1| hypothetical protein BACSTE_01763 [Bacteroides stercoris ATCC
           43183]
 gi|167698683|gb|EDS15262.1| hypothetical protein BACSTE_01763 [Bacteroides stercoris ATCC
           43183]
          Length = 109

 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 40/84 (47%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           K +T++D+V  I+K  G+ +      V    + +  S  + E + +  F +F VK++  +
Sbjct: 17  KKMTKADIVNEITKNTGIDKVTVLATVEAFMDAVKASLSKDENVYLRGFGSFVVKKRAQK 76

Query: 63  VGRNLQTNQEVKIDPRRVVVFKAS 86
             RN+  N  + I    +  FK +
Sbjct: 77  TARNISKNTTIIIPEHNIPAFKPA 100


>gi|255603750|ref|XP_002538109.1| DNA-binding protein HU, putative [Ricinus communis]
 gi|223513783|gb|EEF24275.1| DNA-binding protein HU, putative [Ricinus communis]
          Length = 92

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 37/85 (43%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+ +  L++  S   V  +F  I  +A  G    I  F  F VK   +R  R
Sbjct: 3  TTNEIADKIAADHKLTKVQSKAIVEAVFAAITGAATSGAETSIPGFGKFKVKDTPAREAR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90
          N  T   +K+   + + F  +  LK
Sbjct: 63 NPGTGATIKVAASKKLAFTPAKALK 87


>gi|198277146|ref|ZP_03209677.1| hypothetical protein BACPLE_03354 [Bacteroides plebeius DSM
          17135]
 gi|198269644|gb|EDY93914.1| hypothetical protein BACPLE_03354 [Bacteroides plebeius DSM
          17135]
          Length = 91

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 18/82 (21%), Positives = 39/82 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +      +      + +S  + E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEIAKNTGIDKATVLATLEAFMGSVKESLSKDENVYLRGFGSFIVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82


>gi|160889023|ref|ZP_02070026.1| hypothetical protein BACUNI_01443 [Bacteroides uniformis ATCC
          8492]
 gi|270293860|ref|ZP_06200062.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317479304|ref|ZP_07938439.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36]
 gi|156861490|gb|EDO54921.1| hypothetical protein BACUNI_01443 [Bacteroides uniformis ATCC
          8492]
 gi|270275327|gb|EFA21187.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316904592|gb|EFV26411.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36]
          Length = 91

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 39/82 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +      V    + +  S  + E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEITKNTGIDKTTVLTTVEAFMDAVKASLSKDENVYLRGFGSFVVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82


>gi|312140481|ref|YP_004007817.1| histone-like bacterial DNA-binding protein hupb [Rhodococcus equi
          103S]
 gi|325675901|ref|ZP_08155585.1| histone family DNA-binding protein [Rhodococcus equi ATCC 33707]
 gi|311889820|emb|CBH49137.1| histone-like bacterial DNA-binding protein HupB [Rhodococcus equi
          103S]
 gi|325553872|gb|EGD23550.1| histone family DNA-binding protein [Rhodococcus equi ATCC 33707]
          Length = 242

 Score = 37.4 bits (85), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 50/94 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ ++  V  + + I  +   GE++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTEKLGTDRRTASEAVEHVVDTIVRAVHAGESVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  I    +
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKALIAGGQK 94


>gi|262037630|ref|ZP_06011076.1| DNA-binding protein HU-alpha [Leptotrichia goodfellowii F0264]
 gi|261748346|gb|EEY35739.1| DNA-binding protein HU-alpha [Leptotrichia goodfellowii F0264]
          Length = 55

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 24/35 (68%)

Query: 41 VRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKI 75
           +GE ++   + TF V+++ +R GRN QT +E+KI
Sbjct: 1  AKGETVQFVGWGTFGVQKRAARTGRNPQTGKEIKI 35


>gi|325680359|ref|ZP_08159917.1| DNA-binding protein HU [Ruminococcus albus 8]
 gi|324107952|gb|EGC02210.1| DNA-binding protein HU [Ruminococcus albus 8]
          Length = 110

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + + + V ++S K   L++K  T  V ++ + I ++   G+++    F TF  K + +R 
Sbjct: 1  MNKPEFVNAVSEKNPSLTKKTVTEVVDSVISTIQETVAAGDSVSFVGFGTFSSKVRAARE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            N  T +++ I+ + V  FKA    K  + +
Sbjct: 61 SINPTTKEKIHIEEKTVPTFKAGKAFKDAVAE 92


>gi|124516626|gb|EAY58134.1| putative histone-like DNA-binding protein [Leptospirillum
          rubarum]
          Length = 91

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 27/51 (52%)

Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GE + +  F TF   ++ +R GRN +T +E+KI   RV  F A    K  I
Sbjct: 40 GEKVTLVGFGTFSTVKRKARTGRNPRTGKEIKIPAMRVPKFSAGKAFKGAI 90


>gi|330995080|ref|ZP_08318997.1| putative DNA-binding protein HU [Paraprevotella xylaniphila YIT
          11841]
 gi|332879536|ref|ZP_08447231.1| putative DNA-binding protein HU [Capnocytophaga sp. oral taxon
          329 str. F0087]
 gi|329576656|gb|EGG58159.1| putative DNA-binding protein HU [Paraprevotella xylaniphila YIT
          11841]
 gi|332682502|gb|EGJ55404.1| putative DNA-binding protein HU [Capnocytophaga sp. oral taxon
          329 str. F0087]
          Length = 92

 Score = 37.4 bits (85), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 19/86 (22%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRV 63
          +T++++V  ISK+ G+ +      V      + +S ++ E  + +  F +F +K++  + 
Sbjct: 1  MTKAEIVNEISKKTGIDKATVLTAVEAFMESVKESLIQKEDNVYLRGFGSFILKKRAKKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSIL 89
           RN+  N  + ID   +  FK + + 
Sbjct: 61 ARNISKNTTIIIDEHNIPAFKPAKVF 86


>gi|282880537|ref|ZP_06289244.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1]
 gi|281305640|gb|EFA97693.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1]
          Length = 90

 Score = 37.4 bits (85), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 52/85 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I++  G+S+  + + +    + I ++ V+GE +++  F TF V ++ +R G
Sbjct: 1  MNKTELIDRIAEAAGISKIAAKKALDGTTDAIKEALVKGEKVQLIGFGTFSVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N  T +++KI+ ++V  FKA + L
Sbjct: 61 INPSTKEKIKIEAKKVAKFKAGAEL 85


>gi|94967113|ref|YP_589161.1| histone-like DNA-binding protein [Candidatus Koribacter
          versatilis Ellin345]
 gi|94549163|gb|ABF39087.1| histone-like DNA-binding protein [Candidatus Koribacter
          versatilis Ellin345]
          Length = 98

 Score = 37.4 bits (85), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 43/93 (46%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+  +T++ LV+ +++   +S K +  F+ +L         +     I          + 
Sbjct: 1  MASGMTKTQLVRHMAESHEISNKTAAAFLESLAEVAIKETKKNGVFVIPGLGRLVKSNRK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +RVGRN QT + +KI  + VV F+ +   K  I
Sbjct: 61 ARVGRNPQTGEPIKIPAKTVVKFRVAKAAKDSI 93


>gi|238898294|ref|YP_002923975.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Candidatus
          Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466053|gb|ACQ67827.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Candidatus
          Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 75

 Score = 37.4 bits (85), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 34/59 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          +++L+  ++ +  +S+  +   V +L N + +    G A+ ++ F TF VK++ +R GR
Sbjct: 3  KNELITKVAVDAEISKAKAEAEVNSLINSVTEELKAGGAVALTGFGTFQVKERAARTGR 61


>gi|298292191|ref|YP_003694130.1| histone family protein DNA-binding protein [Starkeya novella DSM
          506]
 gi|296928702|gb|ADH89511.1| histone family protein DNA-binding protein [Starkeya novella DSM
          506]
          Length = 92

 Score = 37.4 bits (85), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 48/88 (54%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+++LV +++++  L++  +   V   F+ I  S   GE +K+  F +F V  + +R GR
Sbjct: 3  TKNELVAAVAEQAKLTKAAAAAAVDATFDAIAASLKAGEEVKLIGFGSFSVVTRAAREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93
          N +T + VKI+  +   F     LK+ +
Sbjct: 63 NPRTGKPVKIEASKAPKFTPGKGLKETV 90


>gi|189465618|ref|ZP_03014403.1| hypothetical protein BACINT_01976 [Bacteroides intestinalis DSM
          17393]
 gi|189437892|gb|EDV06877.1| hypothetical protein BACINT_01976 [Bacteroides intestinalis DSM
          17393]
          Length = 59

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          G  + + SF TF VK+K  R+  N  T   + + P+ V+ ++ S+ LK
Sbjct: 8  GNIVSVQSFGTFEVKKKAERITINPTTKLRMLVPPKLVLTYRPSTTLK 55


>gi|320008332|gb|ADW03182.1| histone family protein DNA-binding protein [Streptomyces
          flavogriseus ATCC 33331]
          Length = 218

 Score = 37.0 bits (84), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1  MNKAQLVEAIADKVG-GRQQAADAVDVVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + V++    V  F+A    K
Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85


>gi|325266084|ref|ZP_08132770.1| DNA-binding protein HU-beta [Kingella denitrificans ATCC 33394]
 gi|324982722|gb|EGC18348.1| DNA-binding protein HU-beta [Kingella denitrificans ATCC 33394]
          Length = 101

 Score = 37.0 bits (84), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + +S+L+ +++KE GL++ D+ +     F  +  +A++  + I +  F TF V ++  R 
Sbjct: 1  MNKSELIDAVAKESGLTKADAAK-AVDAFTSVVKTALKADDTITLVGFGTFKVAERAERQ 59

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          G N +T + + I   RV  F     LK  ++
Sbjct: 60 GLNPKTREAITIPAARVPKFTPGKGLKDALV 90


>gi|329954834|ref|ZP_08295851.1| LysM domain protein [Bacteroides clarus YIT 12056]
 gi|328526938|gb|EGF53949.1| LysM domain protein [Bacteroides clarus YIT 12056]
          Length = 412

 Score = 37.0 bits (84), Expect = 0.82,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 44/93 (47%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +   DL+  ++++ G+S+K++  FV   F  I ++  + + +KI     F +    
Sbjct: 1  MNEKLNIQDLIDLLAEKHGMSKKNADSFVKEFFQLIEEALEKDKYVKIKGLGAFKLIDVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T +  +I     V F     LK  I
Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDII 93


>gi|85706119|ref|ZP_01037214.1| DNA-binding protein HU [Roseovarius sp. 217]
 gi|85669283|gb|EAQ24149.1| DNA-binding protein HU [Roseovarius sp. 217]
          Length = 95

 Score = 37.0 bits (84), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 20/90 (22%), Positives = 45/90 (50%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +T++ LV +++ E G  +K +   + ++   I      G A+ +      + +++ 
Sbjct: 1  MAKPMTKTQLVAALADEMGSDKKTAGAALDSVIAIITREVSAGGAVTLPGIGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
           R+ RN  T +++K +  +VV    +  LK
Sbjct: 61 ERMVRNPATGEQMKKEADKVVKMTIAKALK 90


>gi|148653384|ref|YP_001280477.1| histone family protein DNA-binding protein [Psychrobacter sp.
          PRwf-1]
 gi|148572468|gb|ABQ94527.1| histone family protein DNA-binding protein [Psychrobacter sp.
          PRwf-1]
          Length = 99

 Score = 37.0 bits (84), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 20/94 (21%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 1  MSKTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          M++ I +SDL++ ++     ++  D    V  +   + +  +    I++  F TF +  +
Sbjct: 1  MTEVINKSDLIQDVAARCDYMADSDVDNAVREILELLSEKLISNNRIEVRGFGTFCLHHR 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           +R GRN +T + V +  + +  FK    L++ +
Sbjct: 61 EARQGRNPKTGEMVLVPQKAIPHFKPGKALREGV 94


>gi|282890554|ref|ZP_06299077.1| hypothetical protein pah_c022o145 [Parachlamydia acanthamoebae
          str. Hall's coccus]
 gi|281499551|gb|EFB41847.1| hypothetical protein pah_c022o145 [Parachlamydia acanthamoebae
          str. Hall's coccus]
          Length = 102

 Score = 37.0 bits (84), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 37/79 (46%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+  L+ SI++E  +   D    +    + + ++   GE ++   F  F V ++  ++
Sbjct: 10 TMTKKKLINSIAQEKQIHPNDVRNVIQAFLDRMTEALAEGERLEFRDFGVFEVVERKQKI 69

Query: 64 GRNLQTNQEVKIDPRRVVV 82
          GRN +      I P R  V
Sbjct: 70 GRNPKNAAVPIIIPARSAV 88


>gi|304372872|ref|YP_003856081.1| Histone-like DNA-binding protein [Mycoplasma hyorhinis HUB-1]
 gi|304309063|gb|ADM21543.1| Histone-like DNA-binding protein [Mycoplasma hyorhinis HUB-1]
 gi|330723543|gb|AEC45913.1| nucleoid DNA-binding protein [Mycoplasma hyorhinis MCLD]
          Length = 90

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 39/86 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  I  E  L+ KD+   + + F+ +     RG+ + I+ F TF    K     
Sbjct: 1  MNKKELLDLIVDETQLTHKDTEAVLNSFFDIVTSQIKRGDKVVIAGFGTFQGVFKEQSTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N  T  EV I  + V  FK S  LK
Sbjct: 61 INPITKSEVNIPAKMVAKFKPSKNLK 86


>gi|299117325|emb|CBN75285.1| DNA-binding protein HU [Ectocarpus siliculosus]
          Length = 161

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 28  FVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASS 87
           F   +  E+ D    G  I +  F TF  + +  R GRN +T +E+KI       F AS 
Sbjct: 94  FTDVVMQEVAD----GNKISLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASK 149

Query: 88  ILKKRI 93
             K  +
Sbjct: 150 AFKDMV 155


>gi|298480649|ref|ZP_06998845.1| DNA-binding protein HU [Bacteroides sp. D22]
 gi|298273083|gb|EFI14648.1| DNA-binding protein HU [Bacteroides sp. D22]
          Length = 93

 Score = 37.0 bits (84), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 18/82 (21%), Positives = 40/82 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L+  I+++ G+ +      V      + +S V G  + +  F +F +K++  RV 
Sbjct: 1  MTKAELITRIAQQSGIEKTIVMTVVEAFMENVKESMVAGNDVFLRGFGSFVIKRRAKRVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + +       FK +
Sbjct: 61 RNISENTTIVVPAHFFPAFKPA 82


>gi|253682948|ref|ZP_04863735.1| DNA-binding protein HU [Clostridium phage D-1873]
 gi|253560874|gb|EES90336.1| DNA-binding protein HU [Clostridium phage D-1873]
          Length = 95

 Score = 37.0 bits (84), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 1  MSKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          M KT     +V+ +  KE  +S+KD     + +   + +  V+ E    +   TF    +
Sbjct: 1  MVKTELLGRMVEKLEGKEVKVSKKDMDAIYSAVLETVAE-VVKEEGKLTTPIGTFKNTTR 59

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          G+RVGRN ++ +E++I     + FK S  +K++
Sbjct: 60 GARVGRNPRSGEEIQIAESHALTFKQSKAVKEQ 92


>gi|189465619|ref|ZP_03014404.1| hypothetical protein BACINT_01977 [Bacteroides intestinalis DSM
          17393]
 gi|189437893|gb|EDV06878.1| hypothetical protein BACINT_01977 [Bacteroides intestinalis DSM
          17393]
          Length = 433

 Score = 37.0 bits (84), Expect = 0.87,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +   +L++ ++++ G+ + D+  FV   F  I +S    + +KI    TF +    
Sbjct: 1  MNEKLNIQNLIELLAEKHGMDKTDAESFVKEFFQLIEESLESDKYVKIKGLGTFKLIDVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T +  +I     V F     LK  I
Sbjct: 61 SRESVNINTGERFEIQGHTKVSFTPEPTLKDLI 93


>gi|257469043|ref|ZP_05633137.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
 gi|317063289|ref|ZP_07927774.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688965|gb|EFS25800.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 94

 Score = 37.0 bits (84), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 34/69 (49%)

Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88
          +   +  + DS    E +    + TF VK+   R+  N +T +  KI P   +VFK   I
Sbjct: 26 IEAFWETLIDSLQEDERLIFKGWGTFEVKKIKERIFNNPRTKKIEKISPINKIVFKQGKI 85

Query: 89 LKKRIMDDM 97
          LKK+  +++
Sbjct: 86 LKKKFNEEI 94


>gi|325300026|ref|YP_004259943.1| histone family protein DNA-binding protein [Bacteroides
          salanitronis DSM 18170]
 gi|324319579|gb|ADY37470.1| histone family protein DNA-binding protein [Bacteroides
          salanitronis DSM 18170]
          Length = 91

 Score = 37.0 bits (84), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 18/82 (21%), Positives = 39/82 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++V  I++  G+ R+     +    N +  S    E + +  F +F VK++  +  
Sbjct: 1  MTKAEIVNEIARNTGIDRQTVLTTLEAFMNSVKTSLSNDENVYLRGFGSFIVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82


>gi|303257412|ref|ZP_07343425.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
 gi|331001348|ref|ZP_08324972.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis
          YIT 11859]
 gi|302859769|gb|EFL82847.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
 gi|329568607|gb|EGG50409.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis
          YIT 11859]
          Length = 94

 Score = 37.0 bits (84), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 25 STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84
          +TR + T+   I  S   GE + +  F TF   ++ +RV  N  T +++++ PR V  F 
Sbjct: 21 ATRTLNTMIRSIMTSVKNGEPVVLVGFGTFRQVKRKARVICNPHTGEKLELKPRSVPKFV 80

Query: 85 ASSILKKRIMDD 96
            ++ K+ I+D+
Sbjct: 81 PGTLFKQ-IVDE 91


>gi|296129746|ref|YP_003636996.1| histone family protein DNA-binding protein [Cellulomonas
          flavigena DSM 20109]
 gi|296021561|gb|ADG74797.1| histone family protein DNA-binding protein [Cellulomonas
          flavigena DSM 20109]
          Length = 93

 Score = 37.0 bits (84), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 48/90 (53%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R++LV++++++ GL+  D+ + +  L   + +    G ++ I  F      ++ +R 
Sbjct: 2  SVNRTELVQAVAEKAGLTNVDADKALKALQEVVVEQLAAGGSVSIPGFLAVARAERAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          G N QT ++++I     V   A S LK+ +
Sbjct: 62 GVNPQTGEKLEIPAGHRVKITAGSALKRAV 91


>gi|322836844|ref|YP_004210758.1| histone family protein DNA-binding protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321165931|gb|ADW71631.1| histone family protein DNA-binding protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 125

 Score = 37.0 bits (84), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-----GEAIKISSFATFHVKQKGSRV 63
           +LVK ++++  LS K S  F    F+ +  +A++     GE   I         Q+ +R+
Sbjct: 37  ELVKLVAEKMELSLKQSAAF----FDLLASTAIQETKKNGE-FTIPGLGKLVKAQRAARI 91

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN QT + +KI  +  V F+ +   K  I
Sbjct: 92  GRNPQTGESIKIKAKTAVKFRVAKAAKDMI 121


>gi|330984063|gb|EGH82166.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str.
          M301315]
          Length = 90

 Score = 37.0 bits (84), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 37/80 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +L+ ++  + G+ RKD    +  L   I D         +    TF V ++ +R G
Sbjct: 1  MTKKELIDALIAKSGVDRKDVEAVINALPETIKDEIRATGQSAVYGLGTFKVSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFK 84
          RN  T   ++I   +VV  K
Sbjct: 61 RNPSTGAAIEIPASKVVSVK 80


>gi|114765808|ref|ZP_01444901.1| DNA-binding protein HU [Pelagibaca bermudensis HTCC2601]
 gi|114541807|gb|EAU44844.1| DNA-binding protein HU [Roseovarius sp. HTCC2601]
          Length = 95

 Score = 37.0 bits (84), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 19/90 (21%), Positives = 44/90 (48%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +T++ LV ++++E G  +K ++  +  +   I      G A+ +      + +++ 
Sbjct: 1  MAKPMTKTQLVAALAEEMGADKKTASTALDAITGIITKEVAEGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
           R+ RN  T ++ K +  + V    +  LK
Sbjct: 61 ERMVRNPATGEQFKKEADKQVKMTIAKALK 90


>gi|317476992|ref|ZP_07936234.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316906785|gb|EFV28497.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 389

 Score = 37.0 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 44/93 (47%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +   DL+  ++++ G+S+K++  FV   F  I ++  + + +K+     F +    
Sbjct: 1  MNEKLNIQDLIDLLAEKHGMSKKNADSFVKEFFQLIEEALEKDKYVKVKGLGAFKLIDVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T +  +I     V F     LK  I
Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDLI 93


>gi|224824984|ref|ZP_03698090.1| histone family protein DNA-binding protein [Lutiella nitroferrum
          2002]
 gi|224602655|gb|EEG08832.1| histone family protein DNA-binding protein [Lutiella nitroferrum
          2002]
          Length = 62

 Score = 37.0 bits (84), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 42 RGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          +G+ + +  F TF+V ++  R GRN +T   + I   R   F+A   LK
Sbjct: 11 QGDTVTLVGFGTFYVGERAERTGRNPKTGDSITIPAARSPKFRAGKALK 59


>gi|319956531|ref|YP_004167794.1| histone family protein DNA-binding protein [Nitratifractor
          salsuginis DSM 16511]
 gi|319418935|gb|ADV46045.1| histone family protein DNA-binding protein [Nitratifractor
          salsuginis DSM 16511]
          Length = 90

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 43/87 (49%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          ++D +  ++++ GLS+KD+   +      I ++  R E +    F +F   +K  R    
Sbjct: 3  KTDFIAEVAQKSGLSKKDTEAVIDAALETITEALKRRENVSFLGFGSFQAVKKNEREITI 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
            T ++VK+  +  V FK   +LK+ +
Sbjct: 63 PGTTRKVKVPAKYSVRFKPGKLLKEAV 89


>gi|218130464|ref|ZP_03459268.1| hypothetical protein BACEGG_02053 [Bacteroides eggerthii DSM
          20697]
 gi|317473947|ref|ZP_07933226.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
 gi|329954389|ref|ZP_08295481.1| DNA-binding protein HU [Bacteroides clarus YIT 12056]
 gi|217987343|gb|EEC53673.1| hypothetical protein BACEGG_02053 [Bacteroides eggerthii DSM
          20697]
 gi|316909789|gb|EFV31464.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
 gi|328527657|gb|EGF54650.1| DNA-binding protein HU [Bacteroides clarus YIT 12056]
          Length = 91

 Score = 37.0 bits (84), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 39/82 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +      V    + +  S  + E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEITKNTGIDKVTVLTTVEAFMDAVKASLSKDENVYLRGFGSFVVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82


>gi|254884846|ref|ZP_05257556.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA]
 gi|254837639|gb|EET17948.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA]
          Length = 94

 Score = 37.0 bits (84), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 41/82 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L K I+ + G   +  +  V +L   I  S  + E + +  F +F +K++  +  
Sbjct: 1  MTKAELCKKITDQTGCDMQTVSAIVESLMVSIKGSLEKEENVYLRGFGSFIIKRRAEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK++
Sbjct: 61 RNISKNTTIIIPAHNIPAFKSA 82


>gi|329960937|ref|ZP_08299216.1| DNA-binding protein HU [Bacteroides fluxus YIT 12057]
 gi|328532223|gb|EGF59027.1| DNA-binding protein HU [Bacteroides fluxus YIT 12057]
          Length = 91

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 39/82 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +      V    + +  S  + E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEITKNTGIDKVTVLTTVEAFMDAVKASLSKDENVYLRGFGSFVVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82


>gi|301166851|emb|CBW26428.1| integration host factor beta-subunit [Bacteriovorax marinus SJ]
          Length = 108

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 34/65 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DL+ +I K+  L+ K +   +   F+ +  S    E I+I  F +F  +   +  G
Sbjct: 8  MTKADLIAAIEKQANLTHKQAESIINICFDSMIKSLYNDERIEIRGFGSFANRNYKAYEG 67

Query: 65 RNLQT 69
          RN +T
Sbjct: 68 RNPKT 72


>gi|221128059|ref|XP_002155705.1| PREDICTED: similar to hlpA [Hydra magnipapillata]
 gi|260222710|emb|CBA32540.1| DNA-binding protein HU-alpha [Curvibacter putative symbiont of
          Hydra magnipapillata]
          Length = 94

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/79 (22%), Positives = 41/79 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+++++ +  LS+  + R +  L   I     + E +++  F TF   ++ +R G
Sbjct: 1  MNKGELIEALAAKSELSKAAAGRTLDALIEIITAKVAKKEDVQLIGFGTFKAAKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVF 83
          +N +T + +KI    V  F
Sbjct: 61 KNPRTGEALKITATTVPKF 79


>gi|239907249|ref|YP_002953990.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
          RS-1]
 gi|283850195|ref|ZP_06367484.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          FW1012B]
 gi|303247218|ref|ZP_07333492.1| histone family protein DNA-binding protein [Desulfovibrio
          fructosovorans JJ]
 gi|239797115|dbj|BAH76104.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
          RS-1]
 gi|283574221|gb|EFC22192.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          FW1012B]
 gi|302491377|gb|EFL51265.1| histone family protein DNA-binding protein [Desulfovibrio
          fructosovorans JJ]
          Length = 91

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/89 (19%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K++++   L   ++   V    + +  + +  + ++I  F +F +K      G
Sbjct: 1  MNKSELIKTLAETKDLHIDEAADIVNAFVDSVKQALINEDRVEIRGFGSFKIKGYKGYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN ++   V + P+++  F+    LK+ +
Sbjct: 61 RNPKSGDVVTVAPKKLPFFRPGKELKEYL 89


>gi|309813267|ref|ZP_07706983.1| DNA-binding protein HU [Dermacoccus sp. Ellin185]
 gi|308432763|gb|EFP56679.1| DNA-binding protein HU [Dermacoccus sp. Ellin185]
          Length = 119

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           + + + ++DLV  +    G S+K +   V  + + I      G  + I+ F TF    + 
Sbjct: 8   VGRKMNKADLVDRLEVRLG-SKKAALEAVEAVVDVIIREVAAGNKVGITGFGTFERVDRA 66

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           +R GRN +T + V+I    V  F   +  K    D
Sbjct: 67  ARTGRNPRTGEAVRIGATSVPKFTPGTNFKAVTAD 101


>gi|29346321|ref|NP_809824.1| putative integration host factor IHF subunit alpha [Bacteroides
          thetaiotaomicron VPI-5482]
 gi|253568258|ref|ZP_04845669.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29338216|gb|AAO76018.1| putative integration host factor IHF alpha subunit [Bacteroides
          thetaiotaomicron VPI-5482]
 gi|251842331|gb|EES70411.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 487

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  DL+  ++ +  +++KD+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNERLTIQDLIDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLVDVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T +  +I     V F   + L+  I
Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFTPDTNLRDTI 93


>gi|224540004|ref|ZP_03680543.1| hypothetical protein BACCELL_04916 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224518371|gb|EEF87476.1| hypothetical protein BACCELL_04916 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 471

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +   +L++ ++++ G+ + D+  FV   F  I +S    + +KI    TF +    
Sbjct: 1  MNEKLNIQNLIELLAEKHGMDKADAESFVKEFFQLIEESLENDKYVKIRGLGTFKLIDVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T +  +I     V F     LK  I
Sbjct: 61 SRESVNINTGERFEIQGHTKVSFAPEPALKDLI 93


>gi|189425695|ref|YP_001952872.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
 gi|189421954|gb|ACD96352.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
          Length = 96

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 41/86 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++ + G+++  + + +         +   G+ + +  F TF    + +R G
Sbjct: 1  MKKADLVAKMATDAGITKAQAEKALAAFTAATEAALKAGDKVTLVGFGTFSTISRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT +E+KI  +    F     LK
Sbjct: 61 RNPQTGKEIKIAAKTSAKFSPGKGLK 86


>gi|270643381|ref|ZP_06222167.1| DNA-binding protein HU-2 [Haemophilus influenzae HK1212]
 gi|270317269|gb|EFA28837.1| DNA-binding protein HU-2 [Haemophilus influenzae HK1212]
          Length = 46

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 24/44 (54%)

Query: 50 SFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           F TF V ++ +R GRN QT  E++I   +V  F +   LK  I
Sbjct: 2  GFGTFKVNERAARTGRNPQTGAEIQIAASKVPAFVSGKALKDAI 45


>gi|189466527|ref|ZP_03015312.1| hypothetical protein BACINT_02902 [Bacteroides intestinalis DSM
          17393]
 gi|224540249|ref|ZP_03680788.1| hypothetical protein BACCELL_05162 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|189434791|gb|EDV03776.1| hypothetical protein BACINT_02902 [Bacteroides intestinalis DSM
          17393]
 gi|224518128|gb|EEF87233.1| hypothetical protein BACCELL_05162 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 91

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 39/82 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +      V    + +  S  + E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEITKNTGIDKVTVLTTVEAFMDTVKASLSKDENVYLRGFGSFVVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82


>gi|114776643|ref|ZP_01451686.1| DNA-binding protein HU [Mariprofundus ferrooxydans PV-1]
 gi|114552729|gb|EAU55160.1| DNA-binding protein HU [Mariprofundus ferrooxydans PV-1]
          Length = 102

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/89 (21%), Positives = 40/89 (44%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++   GLS+  +   V      I +    G  + +  F  F V  + +R  
Sbjct: 1  MNKTNLINHVASSAGLSKSAAGDAVEAAIGGIINVLSDGGTVSLVGFGRFSVIARAARTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + +++      +FK S  LK  +
Sbjct: 61 RNPRTGETIEVAASNAPIFKPSKALKDAV 89


>gi|225851318|ref|YP_002731552.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Persephonella marina EX-H1]
 gi|225646385|gb|ACO04571.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Persephonella marina EX-H1]
          Length = 92

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T  +L   +SK   +  + + + V  +F+ +    +RG+ +++  F  F+ K + S   
Sbjct: 1  MTYKELKIQVSKNAQVPVEVADKVVEEVFHTLKSVMLRGDRLQVPGFGVFYTKIRSS--- 57

Query: 65 RNLQTNQEVKIDP-RRVVVFKASSILKKRI 93
          R ++T+ E+K  P +RV VF  +  LKK I
Sbjct: 58 RKVKTHGEIKQLPSKRVPVFAPAKALKKEI 87


>gi|330444386|ref|YP_004377372.1| histone-like DNA-binding protein [Chlamydophila pecorum E58]
 gi|328807496|gb|AEB41669.1| Bacterial histone-like DNA-binding protein [Chlamydophila pecorum
          E58]
          Length = 100

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+  L+ +IS++  +        +    +++ D+ V+G+ ++   F    V ++  +V
Sbjct: 3  TMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVKGDRLEFRDFGVLQVVERKPKV 62

Query: 64 GRNLQTNQ-EVKIDPRRVVVFKASSILKKRI 93
          GRN +     + I  R+ V F     +K+ I
Sbjct: 63 GRNPKNAAVPIHIPARKAVKFTPGKRMKRLI 93


>gi|149913075|ref|ZP_01901609.1| hypothetical protein RAZWK3B_03765 [Roseobacter sp. AzwK-3b]
 gi|149813481|gb|EDM73307.1| hypothetical protein RAZWK3B_03765 [Roseobacter sp. AzwK-3b]
          Length = 95

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/90 (22%), Positives = 44/90 (48%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +T++ LV +++ E G  +K +   +  +   I      G A+ +      + +++ 
Sbjct: 1  MAKPMTKTQLVAALADEMGTDKKTAGTALDAVTAIITREVSGGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
           R+ RN  T +++K +  +VV    +  LK
Sbjct: 61 ERMVRNPATGEQIKKEADKVVKMTIAKALK 90


>gi|144898899|emb|CAM75763.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum
          gryphiswaldense MSR-1]
          Length = 87

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 51 FATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          F TF   ++ +R GRN QT + ++I     + FKASS LKK
Sbjct: 47 FGTFSKSERPARQGRNPQTGKTIEIAASSTIKFKASSSLKK 87


>gi|67459500|ref|YP_247124.1| DNA-binding protein HU [Rickettsia felis URRWXCal2]
 gi|239946853|ref|ZP_04698606.1| DNA-binding protein HU [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|67005033|gb|AAY61959.1| DNA-binding protein HU [Rickettsia felis URRWXCal2]
 gi|239921129|gb|EER21153.1| DNA-binding protein HU [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 110

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/72 (23%), Positives = 37/72 (51%)

Query: 20  LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
           L++ D+ + +  + + +  +      I I+ F +F +  + +R GRN +T  ++KID   
Sbjct: 36  LTKADAEKALNLVLDSVISAIKSHHNINITGFGSFEIHHRKAREGRNPKTGAKMKIDAYN 95

Query: 80  VVVFKASSILKK 91
              F+A   +K+
Sbjct: 96  QPTFRAGRKMKE 107


>gi|16330050|ref|NP_440778.1| DNA binding protein HU [Synechocystis sp. PCC 6803]
 gi|1652537|dbj|BAA17458.1| DNA binding protein HU [Synechocystis sp. PCC 6803]
          Length = 135

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/98 (19%), Positives = 49/98 (50%), Gaps = 6/98 (6%)

Query: 5   ITRSDLVKSIS----KEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
           + + +LV +++    ++ G  +++K+    ++   + I +    GE + +  F +F  ++
Sbjct: 36  MNKGELVHAVTDKAKEQLGESITKKEVDAVISAAIDCIMEVVAEGEKVTLVGFGSFEARE 95

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           +  R GRN +T  ++ I   +V  F A  + K ++  +
Sbjct: 96  RKEREGRNPKTGDKMLIPATKVPAFSAGKMFKDKVAPE 133


>gi|114326682|ref|YP_743839.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1]
 gi|114314856|gb|ABI60916.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1]
          Length = 101

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 34/71 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  +DL+  I+K    ++      V+     I  +   GE ++IS    F V ++ +R G
Sbjct: 1  MNHADLIDKIAKSTDQTKATVDAVVSAAIETISATLKAGEEVRISGLGIFDVSERAARQG 60

Query: 65 RNLQTNQEVKI 75
          RN QT   ++I
Sbjct: 61 RNPQTGATIEI 71


>gi|218131130|ref|ZP_03459934.1| hypothetical protein BACEGG_02735 [Bacteroides eggerthii DSM
          20697]
 gi|217986650|gb|EEC52984.1| hypothetical protein BACEGG_02735 [Bacteroides eggerthii DSM
          20697]
          Length = 397

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 44/93 (47%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +   DL+  ++++ G+S+K++  FV   F  I ++  + + +K+     F +    
Sbjct: 1  MNEKLNIQDLIDLLAEKHGMSKKNADSFVKEFFQLIEEALEKDKYVKVKGLGAFKLIDVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T +  +I     V F     LK  I
Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDLI 93


>gi|124007135|sp|Q4UKH2|DBH_RICFE RecName: Full=DNA-binding protein HU
          Length = 99

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/72 (23%), Positives = 37/72 (51%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
          L++ D+ + +  + + +  +      I I+ F +F +  + +R GRN +T  ++KID   
Sbjct: 25 LTKADAEKALNLVLDSVISAIKSHHNINITGFGSFEIHHRKAREGRNPKTGAKMKIDAYN 84

Query: 80 VVVFKASSILKK 91
             F+A   +K+
Sbjct: 85 QPTFRAGRKMKE 96


>gi|3334159|sp|P73418|DBH_SYNY3 RecName: Full=DNA-binding protein HU
          Length = 100

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/98 (19%), Positives = 49/98 (50%), Gaps = 6/98 (6%)

Query: 5  ITRSDLVKSIS----KEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          + + +LV +++    ++ G  +++K+    ++   + I +    GE + +  F +F  ++
Sbjct: 1  MNKGELVHAVTDKAKEQLGESITKKEVDAVISAAIDCIMEVVAEGEKVTLVGFGSFEARE 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          +  R GRN +T  ++ I   +V  F A  + K ++  +
Sbjct: 61 RKEREGRNPKTGDKMLIPATKVPAFSAGKMFKDKVAPE 98


>gi|296535865|ref|ZP_06898024.1| probable DNA-binding protein HU-alpha [Roseomonas cervicalis ATCC
          49957]
 gi|296263815|gb|EFH10281.1| probable DNA-binding protein HU-alpha [Roseomonas cervicalis ATCC
          49957]
          Length = 89

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 42/89 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          ++++ + + +    G +   + R    L   I     +     + SF TF V++  +R G
Sbjct: 1  MSKAFIAQVLQDSLGCTGVAANRAAGELIAAIVKDMKKQGGFTLPSFGTFTVRKTKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T + VKI   + V FKAS  L+K +
Sbjct: 61 MNPRTGEPVKIKAGKTVRFKASPNLRKSV 89


>gi|157803381|ref|YP_001491930.1| DNA-binding protein HU [Rickettsia canadensis str. McKiel]
 gi|157784644|gb|ABV73145.1| DNA-binding protein HU [Rickettsia canadensis str. McKiel]
          Length = 110

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/72 (23%), Positives = 38/72 (52%)

Query: 20  LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
           L++ D+ + +  + + + ++      I I+ F +F +  + +R GRN +T  ++KID   
Sbjct: 36  LTKADAEKALNLVLDSVINAIKSHYNINITGFGSFEIHHRKAREGRNPKTGAKMKIDAYN 95

Query: 80  VVVFKASSILKK 91
              F+A   +K+
Sbjct: 96  QPTFRAGRKMKE 107


>gi|255534852|ref|YP_003095223.1| DNA-binding protein HU-beta [Flavobacteriaceae bacterium 3519-10]
 gi|255341048|gb|ACU07161.1| DNA-binding protein HU-beta [Flavobacteriaceae bacterium 3519-10]
          Length = 96

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/91 (20%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA-IKISSFATFHVKQKGSRV 63
          + +S+L+ +++ + G+++  +   + +  + +  +  + +  + +  F TF V ++ +R 
Sbjct: 1  MNKSELIDAMANDAGITKVAAKAALESFISNVTATLSQKDGKVSLVGFGTFSVAERAARQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          G N  T + +KI  + V  FKA + L   +M
Sbjct: 61 GINPATKKPIKIAAKTVAKFKAGADLAGSVM 91


>gi|209543183|ref|YP_002275412.1| histone family protein DNA-binding protein [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209530860|gb|ACI50797.1| histone family protein DNA-binding protein [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 89

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 48 ISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          + SF TF V +  +R   N +T + VK+   + V FKAS +LKK I
Sbjct: 44 LPSFGTFSVHKTKARKALNPRTGEPVKVKAGKTVRFKASPVLKKTI 89


>gi|300113361|ref|YP_003759936.1| histone family protein DNA-binding protein [Nitrosococcus watsonii
           C-113]
 gi|299539298|gb|ADJ27615.1| histone family protein DNA-binding protein [Nitrosococcus watsonii
           C-113]
          Length = 109

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFN-EICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
           +L   I+ + G+   D    V   F  ++      G+ +++S F  F+ +   +R  RN 
Sbjct: 24  ELAGRIAAQTGME-TDQVEVVLAAFKKQVIADLTSGQEVRLSHFGKFYARHMEAREARNP 82

Query: 68  QTNQEVKIDPRRVVVFKA 85
           +T + +++ PR  + FKA
Sbjct: 83  RTGEAIQVPPRSYLRFKA 100


>gi|260425403|ref|ZP_05779383.1| DNA-binding protein HU [Citreicella sp. SE45]
 gi|260423343|gb|EEX16593.1| DNA-binding protein HU [Citreicella sp. SE45]
          Length = 95

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/90 (21%), Positives = 44/90 (48%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +T++ LV ++++E G  +K ++  +  +   I      G A+ +      + +++ 
Sbjct: 1  MAKPMTKTQLVAALAEEMGADKKTASAALDAITGIITKEVADGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
           R+ RN  T ++ K +  + V    +  LK
Sbjct: 61 ERMVRNPATGEQFKKEADKQVKMTIAKALK 90


>gi|114327347|ref|YP_744504.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1]
 gi|114315521|gb|ABI61581.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1]
          Length = 100

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%)

Query: 48  ISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           + SF TF V++  +R G N +T +++K+   + V FKAS  LKK +
Sbjct: 55  LPSFGTFTVRKTKARKGLNPRTGEQIKVKAGKTVRFKASPNLKKSV 100


>gi|80159860|ref|YP_398604.1| histone-like DNA binding protein [Clostridium phage c-st]
 gi|78675450|dbj|BAE47872.1| histone-like DNA binding protein [Clostridium phage c-st]
          Length = 86

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 16 KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKI 75
          KE  +S+KD     + +   + +  V+ E    +   TF    +G+RVGRN ++ +E++I
Sbjct: 8  KEVKVSKKDMDAIYSVVLETVAE-VVKEEGKLTTPIGTFKNTTRGARVGRNPRSGEEIQI 66

Query: 76 DPRRVVVFKASSILKKR 92
               + FK S  +K+ 
Sbjct: 67 AESHALTFKQSKAVKEE 83


>gi|262037516|ref|ZP_06010975.1| DNA-binding protein HU [Leptotrichia goodfellowii F0264]
 gi|261748446|gb|EEY35826.1| DNA-binding protein HU [Leptotrichia goodfellowii F0264]
          Length = 57

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 24/35 (68%)

Query: 41 VRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKI 75
           +GE ++   + TF V+++ +R GRN QT +E+KI
Sbjct: 1  AKGETVQFVGWGTFGVQKRAARKGRNPQTGKEIKI 35


>gi|300743697|ref|ZP_07072717.1| DNA-binding protein HU [Rothia dentocariosa M567]
 gi|311112948|ref|YP_003984170.1| DNA-binding protein HU [Rothia dentocariosa ATCC 17931]
 gi|300380058|gb|EFJ76621.1| DNA-binding protein HU [Rothia dentocariosa M567]
 gi|310944442|gb|ADP40736.1| DNA-binding protein HU [Rothia dentocariosa ATCC 17931]
          Length = 106

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 37/81 (45%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          R++LV  ++++ G S+      +  +F     S  +GE I I  +       + +R GRN
Sbjct: 5  RTELVAEVAEKSGKSQATVNAVLDAVFQAFETSVSKGEKITIPGWLAIERTDRAARTGRN 64

Query: 67 LQTNQEVKIDPRRVVVFKASS 87
           QT + ++I     V   A S
Sbjct: 65 PQTGETIQIPAGHGVKLTAGS 85


>gi|189485144|ref|YP_001956085.1| integration host factor alpha subunit [uncultured Termite group 1
          bacterium phylotype Rs-D17]
 gi|170287103|dbj|BAG13624.1| integration host factor alpha subunit [uncultured Termite group 1
          bacterium phylotype Rs-D17]
          Length = 86

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+  ++S+    S+K++   V  +F E+ +S   G+ + I+ F +F++ +  ++  
Sbjct: 1  MTKNDIAIALSRILS-SKKEAEEAVNKVFEEMSNSLKNGDKVIITGFGSFNMFETKTKRV 59

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN +T +++ I P + + FK S
Sbjct: 60 RNPRTCEKLLIAPMKKIRFKQS 81


>gi|186471029|ref|YP_001862347.1| histone family protein DNA-binding protein [Burkholderia phymatum
          STM815]
 gi|184197338|gb|ACC75301.1| histone family protein DNA-binding protein [Burkholderia phymatum
          STM815]
          Length = 124

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS---SFATFHVKQKGS 61
          + + +L+ +++   G S+  +   +  +   +  +  RGE I++     F +F    +  
Sbjct: 1  MNKQELIDAVAASTGESKASTGEALDAILEAVTSAVTRGETIQLIQLIGFGSFSTGARLE 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKA 85
          R GRNL T   + I   + V F A
Sbjct: 61 RTGRNLSTGDTITIAAAKTVKFTA 84


>gi|304382433|ref|ZP_07364932.1| DNA-binding protein HU-beta [Prevotella marshii DSM 16973]
 gi|304336441|gb|EFM02678.1| DNA-binding protein HU-beta [Prevotella marshii DSM 16973]
          Length = 90

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 35/65 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+   GL++ D+ + +      I D+ V G+ I +  F TF V ++ +R G
Sbjct: 1  MNKTELIDQIANGSGLTKVDARKALDATVKAIKDALVAGDKIALIGFGTFSVNERPAREG 60

Query: 65 RNLQT 69
           N  T
Sbjct: 61 INPAT 65


>gi|294056334|ref|YP_003549992.1| histone family protein DNA-binding protein [Coraliomargarita
          akajimensis DSM 45221]
 gi|293615667|gb|ADE55822.1| histone family protein DNA-binding protein [Coraliomargarita
          akajimensis DSM 45221]
          Length = 91

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 28/45 (62%)

Query: 46 IKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          +++  F TF V ++ +R G N QT +++KI   + V FKA + LK
Sbjct: 44 VQLIGFGTFSVTKRAAREGINPQTGEKIKIKASKAVKFKAGAGLK 88


>gi|218247718|ref|YP_002373089.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
          8801]
 gi|257060945|ref|YP_003138833.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
          8802]
 gi|218168196|gb|ACK66933.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
          8801]
 gi|256591111|gb|ACV01998.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
          8802]
          Length = 95

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/89 (17%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ ++++   + +K +   ++     I ++    + + +  F +F  + + +R G
Sbjct: 1  MNKGELIDAVAERAQVPKKQAEAVISATIETIMEAVSSEDKVTLVGFGSFEARDRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +TN+++ I   +V  F A    K ++
Sbjct: 61 RNPKTNEKMVIPATKVPAFSAGKQFKTKV 89


>gi|150007792|ref|YP_001302535.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC
          8503]
 gi|255013499|ref|ZP_05285625.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_7]
 gi|256840058|ref|ZP_05545567.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
 gi|262381699|ref|ZP_06074837.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B]
 gi|298376838|ref|ZP_06986793.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
 gi|301310172|ref|ZP_07216111.1| DNA-binding protein HU [Bacteroides sp. 20_3]
 gi|149936216|gb|ABR42913.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC
          8503]
 gi|256738988|gb|EEU52313.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
 gi|262296876|gb|EEY84806.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B]
 gi|298266716|gb|EFI08374.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
 gi|300831746|gb|EFK62377.1| DNA-binding protein HU [Bacteroides sp. 20_3]
          Length = 94

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/85 (21%), Positives = 41/85 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+++++ + GL ++++ + +      + +     E I +  F T   + +  R+ 
Sbjct: 1  MNKAELIEALADKTGLQKQEAKKVLDAYIEIVTERMSENEEIVLVGFGTLIPRPQTQRLA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN +T   V I  R  V FK    L
Sbjct: 61 RNPKTGTPVMIPARTTVKFKPGKFL 85


>gi|319902742|ref|YP_004162470.1| histone family protein DNA-binding protein [Bacteroides
          helcogenes P 36-108]
 gi|319417773|gb|ADV44884.1| histone family protein DNA-binding protein [Bacteroides
          helcogenes P 36-108]
          Length = 91

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 38/82 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +      V      +  S  + E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEITKNTGIDKVTVLTTVEAFMEAVKASLSKDENVYLRGFGSFVVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82


>gi|255689974|ref|ZP_05413649.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565]
 gi|260624581|gb|EEX47452.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565]
          Length = 71

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
          +++K    FVT++ N +      GE + +  F TF V ++  R G N  T   + I  ++
Sbjct: 1  MTKKALDAFVTSVTNAMK----AGEKVSLVGFGTFSVSERAERTGINPSTKATITIPAKK 56

Query: 80 VVVFKASSILKKRI 93
          V  FKA + L   +
Sbjct: 57 VAKFKAGAELSAAV 70


>gi|149927320|ref|ZP_01915576.1| DNA-binding protein Hu-beta [Limnobacter sp. MED105]
 gi|149824034|gb|EDM83257.1| DNA-binding protein Hu-beta [Limnobacter sp. MED105]
          Length = 98

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/89 (20%), Positives = 42/89 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+ +   S+  + + +    + +      G+ + +  F TF    + +R G
Sbjct: 1  MNKTELIDAIATKSECSKAAAGKMLDAFIDTVSQQMADGDKVVLVGFGTFQTGARAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + +KI    V  F     LK ++
Sbjct: 61 RNPRTGETIKIAAAVVPKFTPGQGLKTKV 89


>gi|157825356|ref|YP_001493076.1| DNA-binding protein HU [Rickettsia akari str. Hartford]
 gi|157799314|gb|ABV74568.1| DNA-binding protein HU [Rickettsia akari str. Hartford]
          Length = 110

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 20  LSRKDSTRFVTTLFNEICDSAVRGEA-IKISSFATFHVKQKGSRVGRNLQTNQEVKIDPR 78
           L++ D+ + +  + + +  SA+R    I I+ F +F +  + +R GRN +T  ++KID  
Sbjct: 36  LTKADAEKALNLVLDSVI-SAIRSHYNINITGFGSFEIHHRKAREGRNPKTGAKMKIDAY 94

Query: 79  RVVVFKASSILKK 91
               F+A   +K+
Sbjct: 95  NQPTFRAGRKMKE 107


>gi|281424724|ref|ZP_06255637.1| DNA-binding protein HU-beta [Prevotella oris F0302]
 gi|299142061|ref|ZP_07035195.1| DNA-binding protein HU-beta (NS1) (HU-1) [Prevotella oris C735]
 gi|281401094|gb|EFB31925.1| DNA-binding protein HU-beta [Prevotella oris F0302]
 gi|298576523|gb|EFI48395.1| DNA-binding protein HU-beta (NS1) (HU-1) [Prevotella oris C735]
          Length = 91

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 35/62 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+   GLS+ D+ + +      I ++ V G+ I++  F TF V ++ +R G
Sbjct: 1  MNKTELIDKIAAGAGLSKADAKKALDATTAAIKEALVAGDKIQLVGFGTFSVNERPAREG 60

Query: 65 RN 66
           N
Sbjct: 61 IN 62


>gi|218778638|ref|YP_002429956.1| histone family protein DNA-binding protein [Desulfatibacillum
          alkenivorans AK-01]
 gi|218760022|gb|ACL02488.1| histone family protein DNA-binding protein [Desulfatibacillum
          alkenivorans AK-01]
          Length = 90

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS--SFATFHVKQKGSR 62
          +T+ +L++ ++K+  +++  +   + + F E    A++ +  K++   F TF   ++ +R
Sbjct: 1  MTKPELIEKMAKDAKITKAQAAAALKS-FTEGVKMALKKKDGKLTLVGFGTFSKVRRKAR 59

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN QT + +KI     V FK    LK+ I
Sbjct: 60 KGRNPQTGEPIKIKASNAVKFKPGKALKESI 90


>gi|157164945|ref|YP_001466788.1| DNA-binding protein HU 1 (DNA-binding protein II; HB)
          [Campylobacter concisus 13826]
 gi|157101488|gb|EAT97269.2| DNA-binding protein, HU family [Campylobacter concisus 13826]
          Length = 100

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 41/85 (48%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++ +++++ + GLS+KD+ + V      I     +G+ I    F TF    + +R  R 
Sbjct: 3  KAEFIQAVADKAGLSKKDTLKVVDATLETIQAVLEKGDTISFIGFGTFGTADRAARKARV 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKK 91
            T + + +   + V FK    LK+
Sbjct: 63 PGTKKVIDVPASKAVKFKVGKKLKE 87


>gi|315608921|ref|ZP_07883893.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315249301|gb|EFU29318.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 493

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 42/83 (50%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          ++L + +S +  +S+ ++  FV  +F  + D   + + +KI SF TF +     R   ++
Sbjct: 12 TELARMLSSKHNMSQANAENFVRLMFAVVGDGLEQEKLVKIKSFGTFKMGSVKDRESVDV 71

Query: 68 QTNQEVKIDPRRVVVFKASSILK 90
           T + + I+ R  + F   + L+
Sbjct: 72 NTGERIVIEGRNKINFTPDNALR 94


>gi|308178354|ref|YP_003917760.1| DNA-binding protein HU [Arthrobacter arilaitensis Re117]
 gi|308178355|ref|YP_003917761.1| DNA-binding protein HU [Arthrobacter arilaitensis Re117]
 gi|307745817|emb|CBT76789.1| DNA-binding protein HU [Arthrobacter arilaitensis Re117]
 gi|307745818|emb|CBT76790.1| DNA-binding protein HU [Arthrobacter arilaitensis Re117]
          Length = 94

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 40/90 (44%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + RS+LV +++ +   S+      +  +F    D   +GE + I  +       + +R 
Sbjct: 2  AMNRSELVAAVAAKTENSQVAVNGVLDAVFEVFVDQISKGEKVSIPGWLAVERTDRAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QT + ++I     V   A S LK  +
Sbjct: 62 GRNPQTGEAIQIPAGHSVKLTAGSKLKAAV 91


>gi|297516633|ref|ZP_06935019.1| transcriptional regulator HU subunit beta [Escherichia coli OP50]
          Length = 63

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 33/62 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + +S   G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60

Query: 65 RN 66
          RN
Sbjct: 61 RN 62


>gi|258543687|ref|YP_003189120.1| histone-like DNA-binding protein HU [Acetobacter pasteurianus IFO
          3283-01]
 gi|329113852|ref|ZP_08242623.1| DNA-binding protein HU-alpha [Acetobacter pomorum DM001]
 gi|256634765|dbj|BAI00741.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-01]
 gi|256637821|dbj|BAI03790.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-03]
 gi|256640875|dbj|BAI06837.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-07]
 gi|256643930|dbj|BAI09885.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-22]
 gi|256646985|dbj|BAI12933.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-26]
 gi|256650038|dbj|BAI15979.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-32]
 gi|256653028|dbj|BAI18962.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-01-42C]
 gi|256656082|dbj|BAI22009.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-12]
 gi|326696862|gb|EGE48532.1| DNA-binding protein HU-alpha [Acetobacter pomorum DM001]
          Length = 89

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          L + I +   R     + SF TF V++  +R   N +T ++VK+   + V FKAS  LKK
Sbjct: 28 LIDAIVEELKREGGFTLPSFGTFTVRKTKARKALNPRTGEQVKVKAGKTVRFKASPNLKK 87

Query: 92 RI 93
           +
Sbjct: 88 AV 89


>gi|292905267|ref|YP_003541138.1| Histone-like DNA-binding protein [Anabaena variabilis ATCC 29413]
 gi|75705005|gb|ABA24680.1| Histone-like DNA-binding protein [Anabaena variabilis ATCC 29413]
          Length = 97

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/93 (18%), Positives = 45/93 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+++++ +  +S+K +   +    + I ++   G  + +  F +F  + +  R G
Sbjct: 1  MNKAELIQAVAAKANVSQKQAETVLNATTDTIVETVANGGKVILVGFGSFEARARKEREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          RN +TN+++ I    V  F      K  +   +
Sbjct: 61 RNPKTNEKMIIPATTVPAFSPGKHFKTEVTATL 93


>gi|189463294|ref|ZP_03012079.1| hypothetical protein BACCOP_04011 [Bacteroides coprocola DSM
          17136]
 gi|189430024|gb|EDU99008.1| hypothetical protein BACCOP_04011 [Bacteroides coprocola DSM
          17136]
          Length = 91

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/82 (20%), Positives = 39/82 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I++  G+ +      +    + + +S    E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEIARNTGIDKATVLTTLEAFMDSVKESLSNDENVYLRGFGSFIVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+  N  + I    +  FK +
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82


>gi|170739317|ref|YP_001767972.1| histone family protein DNA-binding protein [Methylobacterium sp.
          4-46]
 gi|168193591|gb|ACA15538.1| histone family protein DNA-binding protein [Methylobacterium sp.
          4-46]
          Length = 102

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/90 (21%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + R+ L++ ++     L    +   V  + + I ++ + G+ I++  F       + +R 
Sbjct: 1  MLRAQLIQRVAALNPHLPHGQADALVRAVLDRITEALMEGDRIELRGFGVLKTTAREARQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T + V++  +R V F+AS  + +R+
Sbjct: 61 SRNPRTGEAVEVPAKRDVAFRASREMHERL 90


>gi|46579547|ref|YP_010355.1| DNA-binding protein HU subunit beta [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|46448962|gb|AAS95614.1| DNA-binding protein HU, beta subunit [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|311233363|gb|ADP86217.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris RCH1]
          Length = 95

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/74 (24%), Positives = 35/74 (47%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
          ++R+D  R +    +      + G  + +         ++ +R GRN +T + + I  RR
Sbjct: 21 ITRRDVERTLDVFGDVAAAELLEGGDVPLPVLGKLRSVERAARAGRNPRTGESIAIPARR 80

Query: 80 VVVFKASSILKKRI 93
          VV FKA   L++ +
Sbjct: 81 VVTFKAGKDLREAL 94


>gi|308271404|emb|CBX28012.1| DNA-binding protein HU-alpha [uncultured Desulfobacterium sp.]
          Length = 88

 Score = 36.2 bits (82), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA-IKISSFATFHVKQKGSRV 63
          +T+++LV   +++ G+S+  +   + ++ + I  +  + +  + +  F TF   ++ +R 
Sbjct: 1  MTKAELVDKAAEDAGISKTAAAATLNSIMDSIAKTLKKKDGKVTLVGFGTFTKVRRKARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN QT + +KI    VV F+    L+
Sbjct: 61 GRNPQTGEPIKIKACTVVKFRPGKKLR 87


>gi|302534743|ref|ZP_07287085.1| integration host factor, beta subunit [Streptomyces sp. C]
 gi|302443638|gb|EFL15454.1| integration host factor, beta subunit [Streptomyces sp. C]
          Length = 93

 Score = 36.2 bits (82), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV ++S+   ++RKD+   +  L   + +   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALSERAEVTRKDADAVLAALAETVGEIVAKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN QT   ++I     V   A S LK+
Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKE 88


>gi|254386635|ref|ZP_05001932.1| histone-like DNA-binding protein [Streptomyces sp. Mg1]
 gi|194345477|gb|EDX26443.1| histone-like DNA-binding protein [Streptomyces sp. Mg1]
          Length = 93

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV ++S+   ++RKD+   +  L   I +   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALSERAEVTRKDADAVLAALAETIGEVVAKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN QT   ++I     V   A S LK+
Sbjct: 61 ARNPQTGDPIQIPAGFSVKVSAGSKLKE 88


>gi|283458729|ref|YP_003363367.1| nucleoid DNA-binding protein [Rothia mucilaginosa DY-18]
 gi|283134782|dbj|BAI65547.1| bacterial nucleoid DNA-binding protein [Rothia mucilaginosa
          DY-18]
          Length = 95

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 37/81 (45%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          R++LV  ++++ G S+      +  +F     S  +GE I I  +       + +R GRN
Sbjct: 5  RTELVAEVAEKSGKSQATVNAVLDAVFQVFESSVSKGEKITIPGWMAIERTDRAARTGRN 64

Query: 67 LQTNQEVKIDPRRVVVFKASS 87
           QT + ++I     V   A S
Sbjct: 65 PQTGETIQIPAGHGVKLTAGS 85


>gi|262198187|ref|YP_003269396.1| histone family protein DNA-binding protein [Haliangium ochraceum
          DSM 14365]
 gi|262081534|gb|ACY17503.1| histone family protein DNA-binding protein [Haliangium ochraceum
          DSM 14365]
          Length = 105

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 11/97 (11%)

Query: 5  ITRSDLVKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIK-------ISSFAT 53
          +T+ +L+  +  ++G    L++K     +  +F E+ D  V+ +  K          F T
Sbjct: 1  MTKQELIDRVYAKYGKPANLTKKAVGDIIGGVFEELSDYFVKEKVTKKLTPRFTFPGFGT 60

Query: 54 FHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          F  K + +R GR+ QT  E+ I     + F   S LK
Sbjct: 61 FTKKHREARKGRHPQTGAEITIGATDTLTFSIGSDLK 97


>gi|226354832|ref|YP_002784572.1| DNA-binding protein HU [Deinococcus deserti VCD115]
 gi|226316822|gb|ACO44818.1| putative DNA-binding protein HU (Histone-like protein) [Deinococcus
           deserti VCD115]
          Length = 115

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/89 (21%), Positives = 42/89 (47%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           I ++ L++ ++    L++K +   V T+   +  +   G  + +    T  V Q  +R G
Sbjct: 27  IAKTQLIEMVADRTSLNKKQAGDAVATMLECVVGALREGRNVGLPGLGTLSVAQTAARTG 86

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
               T++++ I   + + FK +S LK  +
Sbjct: 87  VRPGTSEKITIPAGKKIRFKVASTLKGNL 115


>gi|78355172|ref|YP_386621.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
 gi|78217577|gb|ABB36926.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
          Length = 95

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSIL 89
          + D   + E +++ +     V ++  R GRN QT Q + I  R+VV F  +  L
Sbjct: 36 LADGIAKNEGVRLPNVGALTVAERAERQGRNPQTGQPMTIPARKVVKFSPAKSL 89


>gi|170741538|ref|YP_001770193.1| histone family protein DNA-binding protein [Methylobacterium sp.
          4-46]
 gi|168195812|gb|ACA17759.1| histone family protein DNA-binding protein [Methylobacterium sp.
          4-46]
          Length = 102

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 11 VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTN 70
          V  ++     S+ D+   V  + + I ++ + G+ I++  F       + +R  RN +T 
Sbjct: 10 VAELNPHLPYSQADAV--VRAILDRITEALMEGDQIELRGFGALKTTAREARRSRNPRTG 67

Query: 71 QEVKIDPRRVVVFKASSILKKRI 93
          + V++  +R V F+AS  +  R+
Sbjct: 68 EAVEVPAKRDVAFRASREMNGRL 90


>gi|258648339|ref|ZP_05735808.1| putative integration host factor IHF alpha subunit [Prevotella
          tannerae ATCC 51259]
 gi|260851504|gb|EEX71373.1| putative integration host factor IHF alpha subunit [Prevotella
          tannerae ATCC 51259]
          Length = 423

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 41/93 (44%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +   ++  + ++   +S+K +  F    F+ I +       +KI  F TF V    
Sbjct: 1  MNRKLLLQEVADAFAQRANISKKKAEAFCRAFFDLIEEELTHESFVKIKGFGTFKVITVN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R   N+ T + ++ID    + F   S LK  I
Sbjct: 61 ERESININTGERIRIDSHAKLSFVPDSQLKDLI 93


>gi|309774624|ref|ZP_07669648.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917524|gb|EFP63240.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 3_1_53]
          Length = 88

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 43/88 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++++++ I+ + G+S + +   +      I D   + E I+I+ F TF  +    R  
Sbjct: 1  MNKNEIIREIAYKQGISSEVTKGIIDQFIELIGDKMAQREKIQIAGFGTFEARFVSERSS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN QT +++ I       FK    LK++
Sbjct: 61 RNPQTGEKIIIPGHFSPKFKPGKALKEK 88


>gi|240047359|ref|YP_002960747.1| nucleoid DNA-binding protein [Mycoplasma conjunctivae HRC/581]
 gi|239984931|emb|CAT04924.1| Bacterial nucleoid DNA-binding protein [Mycoplasma conjunctivae]
          Length = 90

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L++ IS +  +S+K+    +++ F E+     + + + I+SF TF    K + V 
Sbjct: 1  MNKKELIEIISAKTEMSQKNVEIILSSFFEEVAHVMKKQDKLVINSFGTFQGIYKEASVS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T  E++   + V  FK S  LK+ +
Sbjct: 61 INPLTKSEIRTPAKTVAKFKPSKNLKEFV 89


>gi|330999754|ref|ZP_08323462.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT
          11859]
 gi|329573916|gb|EGG55496.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT
          11859]
          Length = 92

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/71 (23%), Positives = 37/71 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++  G S+ D    +  L  +I  +   G+ I +  F TF   ++ +R G
Sbjct: 1  MNKTELIAAVAEASGKSKADVKDVLDALTAQIVKTVKAGDEISLVGFGTFKSAKREARAG 60

Query: 65 RNLQTNQEVKI 75
          RN  T   ++I
Sbjct: 61 RNPATGATIQI 71


>gi|163841555|ref|YP_001625960.1| DNA-binding protein HU [Renibacterium salmoninarum ATCC 33209]
 gi|162955031|gb|ABY24546.1| DNA-binding protein HU [Renibacterium salmoninarum ATCC 33209]
          Length = 107

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 36/83 (43%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          RS+LV  ++ +   S+      +  LF+    S   GE I I  +       + +R GRN
Sbjct: 5  RSELVAEVAAKAETSQAAVNNVLDALFSTFESSVAAGEKITIPGWLAVERTDRAARTGRN 64

Query: 67 LQTNQEVKIDPRRVVVFKASSIL 89
           QT + ++I     V   A S L
Sbjct: 65 PQTGETIQIAAGHSVKLTAGSKL 87


>gi|41409122|ref|NP_961958.1| HupB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|254776259|ref|ZP_05217775.1| DNA-binding protein HU [Mycobacterium avium subsp. avium ATCC
          25291]
 gi|41397942|gb|AAS05572.1| HupB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|293652258|gb|ADE60770.1| laminin-binding histone-like protein [Mycobacterium avium subsp.
          paratuberculosis K-10]
 gi|293652260|gb|ADE60771.1| laminin-binding histone-like protein [Mycobacterium avium subsp.
          paratuberculosis]
 gi|293652262|gb|ADE60772.1| laminin-binding histone-like protein [Mycobacterium avium subsp.
          paratuberculosis]
 gi|293652264|gb|ADE60773.1| laminin-binding histone-like protein [Mycobacterium avium subsp.
          avium]
 gi|293652266|gb|ADE60774.1| laminin-binding histone-like protein [Mycobacterium avium]
          Length = 212

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/94 (22%), Positives = 50/94 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++    R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLNTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|162146838|ref|YP_001601299.1| DNA-binding protein HU-beta [Gluconacetobacter diazotrophicus PAl
          5]
 gi|161785415|emb|CAP54963.1| putative DNA-binding protein HU-beta [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 89

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 48 ISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          + SF TF V +  +R   N +T + VK+   + V FKAS +LKK +
Sbjct: 44 LPSFGTFTVHKTKARKALNPRTGEPVKVKAGKTVRFKASPVLKKAV 89


>gi|296171286|ref|ZP_06852690.1| histone family protein [Mycobacterium parascrofulaceum ATCC
          BAA-614]
 gi|295894254|gb|EFG74011.1| histone family protein [Mycobacterium parascrofulaceum ATCC
          BAA-614]
          Length = 211

 Score = 35.8 bits (81), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/94 (22%), Positives = 50/94 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++    R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLNTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|118465605|ref|YP_883003.1| DNA-binding protein HU [Mycobacterium avium 104]
 gi|118166892|gb|ABK67789.1| DNA-binding protein HU [Mycobacterium avium 104]
          Length = 217

 Score = 35.8 bits (81), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/94 (22%), Positives = 50/94 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++    R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 6  MNKAELIDVLTQKLNTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 66 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 99


>gi|297516328|ref|ZP_06934714.1| transcriptional regulator HU subunit alpha [Escherichia coli
          OP50]
          Length = 63

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 33/62 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RN 66
          RN
Sbjct: 61 RN 62


>gi|295689634|ref|YP_003593327.1| histone family protein DNA-binding protein [Caulobacter segnis
          ATCC 21756]
 gi|295431537|gb|ADG10709.1| histone family protein DNA-binding protein [Caulobacter segnis
          ATCC 21756]
          Length = 92

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/88 (20%), Positives = 43/88 (48%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+++LV +I+++ G+++  +   +    + + DS   G+ +++  F TF    + +   R
Sbjct: 3  TKAELVTAIAEKAGINKNQAKDALEAFIDAVTDSLKSGQDVRLVGFGTFKAVTRAAGTAR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93
          N +T + V     +   F+    LK  +
Sbjct: 63 NPRTGETVNRPASKTARFQVGEGLKSSL 90


>gi|110347039|ref|YP_665857.1| histone-like DNA-binding protein [Mesorhizobium sp. BNC1]
 gi|110283150|gb|ABG61210.1| histone-like DNA-binding protein [Chelativorans sp. BNC1]
          Length = 92

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 39/83 (46%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          +++   I+   GL++  +   V ++F EI  +A  G    I +F  F  K+  +R GRN 
Sbjct: 5  NEIADKIAGAHGLTKAQAKTIVESVFKEIAGAAAAGAETSIPAFGKFKPKKTAAREGRNP 64

Query: 68 QTNQEVKIDPRRVVVFKASSILK 90
           T   ++I     + F  +  LK
Sbjct: 65 STGATIRIAASTKLTFTPAKALK 87


>gi|237710577|ref|ZP_04541058.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA]
 gi|237720884|ref|ZP_04551365.1| DNA-binding protein HU [Bacteroides sp. 2_2_4]
 gi|229449719|gb|EEO55510.1| DNA-binding protein HU [Bacteroides sp. 2_2_4]
 gi|229455299|gb|EEO61020.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA]
          Length = 92

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/86 (22%), Positives = 36/86 (41%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L+K +++  G++  +    +     E  D+   G  + I  F T   K    +V RN
Sbjct: 3  KEELIKQVAESTGIAICEVRTVIEAALKETVDAVANGRTLYIRGFGTLSPKHYKRKVARN 62

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKR 92
          +  N+ + I       FK +   K R
Sbjct: 63 IHKNETIVIAEHYTPHFKPAKSFKNR 88


>gi|317504625|ref|ZP_07962592.1| DNA-binding protein HU-beta [Prevotella salivae DSM 15606]
 gi|315664246|gb|EFV03946.1| DNA-binding protein HU-beta [Prevotella salivae DSM 15606]
          Length = 91

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 36/62 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+   GLS+ ++ + +      I ++ V+G+ I++  F TF V ++ +R G
Sbjct: 1  MNKTELIDKIAAGAGLSKAEAKKALDATTAAIKEALVKGDKIQLVGFGTFSVNERPAREG 60

Query: 65 RN 66
           N
Sbjct: 61 IN 62


>gi|300783623|ref|YP_003763914.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32]
 gi|299793137|gb|ADJ43512.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32]
          Length = 225

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 45/84 (53%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          ++ L++++S+  G  +K + + V  L + I  +  +GE + I+ F  F  + + +R  RN
Sbjct: 4  KAQLIEALSERLGDDKKVAAQAVDGLVDIIIRTVNKGEKVNITGFGVFEKRARAARTARN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           +T + VK+    V  F+A +  K
Sbjct: 64 PRTGEAVKVKKTNVPAFRAGTTFK 87


>gi|296135611|ref|YP_003642853.1| histone family protein DNA-binding protein [Thiomonas intermedia
          K12]
 gi|294339747|emb|CAZ88109.1| DNA-binding protein HU-beta (NS1) (HU-1) [Thiomonas sp. 3As]
 gi|295795733|gb|ADG30523.1| histone family protein DNA-binding protein [Thiomonas intermedia
          K12]
          Length = 90

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 14/65 (21%), Positives = 38/65 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ ++    L++  + R +  L + +  +  +G+++ +  F TF V ++ +R G
Sbjct: 1  MNKAELIEHMANNADLNKAQAGRALDALIDAVRRTLKKGDSVSLIGFGTFAVTKRAARTG 60

Query: 65 RNLQT 69
          RN +T
Sbjct: 61 RNPRT 65


>gi|283852590|ref|ZP_06369857.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          FW1012B]
 gi|283572038|gb|EFC20031.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          FW1012B]
          Length = 86

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSRV 63
          +T+++ +K  + E G++ +D+ +    L  ++ ++ +R GE++K     TF       R 
Sbjct: 1  MTQTEFIKRFATESGMT-QDAAKNCLALAGQMVEATMRAGESVKFPCLGTFTPVATKERQ 59

Query: 64 GRNLQTNQEVKIDPRRVVVFKAS 86
          GRN +T + + I     + FKA+
Sbjct: 60 GRNPRTGEPLTIPAGVRIKFKAA 82


>gi|34556922|ref|NP_906737.1| putative DNA-binding protein II (HB) [Wolinella succinogenes DSM
          1740]
 gi|34482637|emb|CAE09637.1| PUTATIVE DNA-BINDING PROTEIN II (HB) [Wolinella succinogenes]
          Length = 91

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/89 (20%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ + +++ + GLS+KDS   + ++   + ++  +G+++    F  F   ++ +R  
Sbjct: 1  MKKAEFIDAVALKAGLSKKDSELALDSILEVLTEALAQGKSVNFIGFGGFSTIERAARKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +   T++ V +   R V FK    LK+ +
Sbjct: 61 KVPGTDKVVDVPAVRAVKFKVGKQLKEAV 89


>gi|39939140|ref|NP_950906.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
 gi|39722249|dbj|BAD04739.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
          OY-M]
          Length = 96

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-----EAIKISSFATFHVKQKGSRVGRN 66
          K + K+  L+ K S       +N   ++ ++      E +       F +K + S +GRN
Sbjct: 4  KELIKKIALANKTSVTKTEEFYNIFENTLIKAITTNEEVVLFPKIGKFKLKSRKSYIGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
           +T +++KI  + VV FK S  +K
Sbjct: 64 PKTKKKIKISAKTVVTFKLSKTIK 87


>gi|303258444|ref|ZP_07344447.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
 gi|302858890|gb|EFL81978.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
          Length = 92

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/71 (23%), Positives = 37/71 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++  G S+ D    +  L  +I  +   G+ I +  F TF   ++ +R G
Sbjct: 1  MNKTELIAAVAEASGKSKADVKDVLDALTAQIVKTVKAGDEISLVGFGTFKSAKREARTG 60

Query: 65 RNLQTNQEVKI 75
          RN  T   ++I
Sbjct: 61 RNPATGATIQI 71


>gi|37522993|ref|NP_926370.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421]
 gi|35213996|dbj|BAC91365.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421]
          Length = 96

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +++K+  L++KD    V   F+ I ++  RG+ + +  F +F  +++ +R G
Sbjct: 1  MNKGELVDAVAKKAKLAKKDVDAIVGAAFDVIVEAVSRGDKVTLVGFGSFEPRKRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +++ I    V  F A    ++ +
Sbjct: 61 RNPKTREKMTIAATTVPAFSAGKQFREAV 89


>gi|317180599|dbj|BAJ58385.1| dna-binding protein hu [Helicobacter pylori F32]
          Length = 94

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DLVK   K    S++++   ++     +  +  RGE++++  F  F   ++  + G+   
Sbjct: 8  DLVKEAGKY--NSKREAEEAISAFILAVETALSRGESVELVGFGKFETAEQKGKEGKVPG 65

Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMD 95
          +++  K + +RV  FK   ILK+++ +
Sbjct: 66 SDKTYKTEDKRVPKFKPGKILKQKVEE 92


>gi|42523574|ref|NP_968954.1| DNA-binding protein HU-alpha (HU-2) [Bdellovibrio bacteriovorus
          HD100]
 gi|39575780|emb|CAE79947.1| DNA-binding protein HU-alpha (HU-2) [Bdellovibrio bacteriovorus
          HD100]
          Length = 90

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 42/86 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ ++++   ++  S   +      I ++   G+ +K+  F TF    + +R G
Sbjct: 1  MNKAQLVELVAEKTKTTKSQSELILDATLEAIQEALKDGDEVKLVGFGTFSRSSRKARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + VKI    +  FK    LK
Sbjct: 61 RNPKTGETVKIPSAYIPKFKPGKDLK 86


>gi|119494127|ref|ZP_01624637.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106]
 gi|119452166|gb|EAW33370.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106]
          Length = 177

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 23 KDSTRFVTTLFNEICDSAVR--------GEAIKISSFATFHVKQKGSRVGRNLQTNQEVK 74
          ++ST F       + DS ++        G  +KI  F  F+ K+ GSR  RN +T + + 
Sbjct: 7  QNSTGFSEATVQAVVDSLIKFVQLELRSGNEVKIPDFGVFYPKELGSRPSRNPRTGESII 66

Query: 75 IDPRRVVVFKASSILKKRIMDDM 97
            P+    F+     +K I + +
Sbjct: 67 AKPKTKPKFRFYDSFEKMIQETL 89


>gi|237716501|ref|ZP_04546982.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262408099|ref|ZP_06084647.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645093|ref|ZP_06722819.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a]
 gi|229444148|gb|EEO49939.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262354907|gb|EEZ03999.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292639599|gb|EFF57891.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a]
          Length = 472

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 42/93 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  DL   ++ +  +++KD+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T +  +I     V F   + L+  I
Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTI 93


>gi|298484175|ref|ZP_07002341.1| integration host factor IHF alpha subunit [Bacteroides sp. D22]
 gi|298269679|gb|EFI11274.1| integration host factor IHF alpha subunit [Bacteroides sp. D22]
          Length = 472

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 42/93 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  DL   ++ +  +++KD+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T +  +I     V F   + L+  I
Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTI 93


>gi|313203644|ref|YP_004042301.1| histone family protein DNA-binding protein [Paludibacter
          propionicigenes WB4]
 gi|312442960|gb|ADQ79316.1| histone family protein DNA-binding protein [Paludibacter
          propionicigenes WB4]
          Length = 494

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/89 (21%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          I+  +++  +S +  +S++ S  F+  + + I +S + G+ +KI +F TF ++    R  
Sbjct: 6  ISSQEVIDLVSSKAQVSKRVSEDFLKVMISTIEESLLSGDVVKIKNFGTFKLQWNEPRKS 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N+ + +++ +     V F    +LK  +
Sbjct: 66 VNVHSGEDILLAGYYKVTFTPDVVLKDLV 94


>gi|293373986|ref|ZP_06620327.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
 gi|292631062|gb|EFF49699.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
          Length = 471

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 42/93 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  DL   ++ +  +++KD+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T +  +I     V F   + L+  I
Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTI 93


>gi|299145604|ref|ZP_07038672.1| putative integration host factor IHF alpha subunit [Bacteroides
          sp. 3_1_23]
 gi|298516095|gb|EFI39976.1| putative integration host factor IHF alpha subunit [Bacteroides
          sp. 3_1_23]
          Length = 471

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 42/93 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  DL   ++ +  +++KD+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T +  +I     V F   + L+  I
Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTI 93


>gi|327313607|ref|YP_004329044.1| DNA-binding protein HU [Prevotella denticola F0289]
 gi|326944082|gb|AEA19967.1| DNA-binding protein HU [Prevotella denticola F0289]
          Length = 419

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 37/84 (44%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          +  ++++ + L   D+  FV T F  I      G  +K+    TF V+    R   N+ T
Sbjct: 9  ITNTLARLYKLPAADAMAFVDTFFAIISSELKNGRQVKVKGLGTFKVQSVKPRESVNVNT 68

Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93
           + V I+    V F   + +K+ +
Sbjct: 69 GERVLIEGHDKVTFTPDTAMKELV 92


>gi|256830460|ref|YP_003159188.1| histone family protein DNA-binding protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579636|gb|ACU90772.1| histone family protein DNA-binding protein [Desulfomicrobium
           baculatum DSM 4028]
          Length = 109

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 31/58 (53%)

Query: 36  ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           I ++  +G+ I +    +F V    +R+GRN +T + + I  RR + FK    L++ +
Sbjct: 50  IREALAKGQGISLPGLGSFSVMLHAARMGRNPRTGETIAIPARRRIHFKTCKGLRELL 107


>gi|125624460|ref|YP_001032943.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|124493268|emb|CAL98235.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|300071248|gb|ADJ60648.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris
          NZ9000]
          Length = 101

 Score = 35.4 bits (80), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 13/49 (26%), Positives = 30/49 (61%)

Query: 42 RGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
           G  + IS+F TF V+++ +R+  ++ + +++ +  + + VF+A   LK
Sbjct: 20 EGATVHISNFGTFEVRKRAARISHDVHSREKILVGEQNIPVFRAGKALK 68


>gi|325854317|ref|ZP_08171516.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A]
 gi|325484111|gb|EGC87045.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A]
          Length = 419

 Score = 35.4 bits (80), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 37/84 (44%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          +  ++++ + L   D+  FV T F  I      G  +K+    TF V+    R   N+ T
Sbjct: 9  ITNTLARLYKLPAADAMAFVDTFFAIISSELKNGRQVKVKGLGTFKVQSVKPRESVNVNT 68

Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93
           + V I+    V F   + +K+ +
Sbjct: 69 GERVLIEGHDKVTFTPDTAMKELV 92


>gi|319941885|ref|ZP_08016206.1| histone family protein DNA-binding protein [Sutterella
          wadsworthensis 3_1_45B]
 gi|319804538|gb|EFW01408.1| histone family protein DNA-binding protein [Sutterella
          wadsworthensis 3_1_45B]
          Length = 93

 Score = 35.4 bits (80), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSRV 63
          + R +LV  ++     S+ +  R + +   EI  SAVR GE++ +  F TF       R 
Sbjct: 1  MNRLELVDRVAARNTASKAEVDRIIVSALEEII-SAVRCGESVTLIGFGTFKAVDCAPRT 59

Query: 64 GRNLQTNQEVKI 75
          GRN  T + ++I
Sbjct: 60 GRNPSTGESIRI 71


>gi|330993012|ref|ZP_08316950.1| DNA-binding protein HU-alpha [Gluconacetobacter sp. SXCC-1]
 gi|329759782|gb|EGG76288.1| DNA-binding protein HU-alpha [Gluconacetobacter sp. SXCC-1]
          Length = 89

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 30/62 (48%)

Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          L   I     R     + SF TF VK+  +R   N +T + VK+   + V FKAS  LKK
Sbjct: 28 LIQAIVKELKREGGFTLPSFGTFTVKKTKARQALNPRTGEPVKVKAGKTVRFKASPNLKK 87

Query: 92 RI 93
           +
Sbjct: 88 AV 89


>gi|302544965|ref|ZP_07297307.1| DNA-binding protein HU [Streptomyces hygroscopicus ATCC 53653]
 gi|307331132|ref|ZP_07610259.1| histone family protein DNA-binding protein [Streptomyces
          violaceusniger Tu 4113]
 gi|302462583|gb|EFL25676.1| DNA-binding protein HU [Streptomyces himastatinicus ATCC 53653]
 gi|306883212|gb|EFN14271.1| histone family protein DNA-binding protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 93

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV ++S+   ++RKD+   +  L     +   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALSERAEVTRKDADAVLAALAEVTGEVVAKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN QT + ++I     V   A S LK+
Sbjct: 61 ARNPQTGEPIEIPAGYSVKVSAGSKLKE 88


>gi|296114622|ref|ZP_06833275.1| histone family protein DNA-binding protein [Gluconacetobacter
          hansenii ATCC 23769]
 gi|295978978|gb|EFG85703.1| histone family protein DNA-binding protein [Gluconacetobacter
          hansenii ATCC 23769]
          Length = 89

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 30/62 (48%)

Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          L   I     R     + SF TF VK+  +R   N +T + VK+   + V FKAS  LKK
Sbjct: 28 LMEAIIKELKREGGFTLPSFGTFTVKKTKARKALNPRTGEPVKVKAGKTVRFKASPNLKK 87

Query: 92 RI 93
           +
Sbjct: 88 AV 89


>gi|159186493|ref|NP_396041.2| DNA binding protein [Agrobacterium tumefaciens str. C58]
 gi|159141553|gb|AAK90482.2| DNA binding protein [Agrobacterium tumefaciens str. C58]
          Length = 76

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 31/71 (43%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
          +++  +   V T+F  I  +A  G    I  F  F +K    R  RN  T   +K+   +
Sbjct: 1  MTKAQAKSIVETVFASITTAATSGAETSIPGFGKFKIKDTPEREARNPATGATIKVAAAK 60

Query: 80 VVVFKASSILK 90
           + F+ +  LK
Sbjct: 61 KLTFQPAKALK 71


>gi|83950622|ref|ZP_00959355.1| DNA-binding protein HU [Roseovarius nubinhibens ISM]
 gi|83838521|gb|EAP77817.1| DNA-binding protein HU [Roseovarius nubinhibens ISM]
          Length = 95

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 43/90 (47%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +T+S L   +++E G  +K +   +  +   I      G A+ +      + +++ 
Sbjct: 1  MAKPLTKSQLSAVLAEEMGSDKKSAAAALDAVCAVITREVSNGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
           R+ RN  T Q++K +  +VV    +  LK
Sbjct: 61 ERMVRNPATGQQIKKEADKVVKMTIAKALK 90


>gi|325269257|ref|ZP_08135876.1| putative integration host factor IHF alpha subunit [Prevotella
          multiformis DSM 16608]
 gi|324988486|gb|EGC20450.1| putative integration host factor IHF alpha subunit [Prevotella
          multiformis DSM 16608]
          Length = 420

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/84 (22%), Positives = 40/84 (47%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          +  +++K++ LS  D++ FV ++F  I      G  +K+    TF ++    R   N+ T
Sbjct: 9  ITGALAKQYKLSASDASVFVDSVFAIISSELKDGRPVKVKGLGTFKIQSVKPRESVNVNT 68

Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93
           + V I     + F   + +K+ +
Sbjct: 69 GERVLIKGHDKITFTPDAAMKELV 92


>gi|27383423|ref|NP_774952.1| HNS-type DNA binding protein [Bradyrhizobium japonicum USDA 110]
 gi|27356598|dbj|BAC53577.1| HNS-type DNA binding protein [Bradyrhizobium japonicum USDA 110]
          Length = 92

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 37/85 (43%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+K + L +  +   V  +F  I D+A       +  F  F VK    R GR
Sbjct: 3  TATEIADEIAKAYNLPKAQAKAIVDGVFKSIADAAASDAETNVPGFGKFKVKHTPEREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90
          N  T   +KI   + + F  +  LK
Sbjct: 63 NPSTGATIKIAAAKKLTFAPAKALK 87


>gi|260431902|ref|ZP_05785873.1| DNA-binding protein HU [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415730|gb|EEX08989.1| DNA-binding protein HU [Silicibacter lacuscaerulensis ITI-1157]
          Length = 95

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/90 (22%), Positives = 42/90 (46%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +T++ LV ++++E G  +K +   +  + N I      G A+ +      + +++ 
Sbjct: 1  MAKPMTKTQLVAALAEEMGTDKKSANAALEAITNLITREVSAGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
           R  RN  T +    +  +VV    +  LK
Sbjct: 61 ERQVRNPATGETFTKEADKVVKMTIAKALK 90


>gi|160882774|ref|ZP_02063777.1| hypothetical protein BACOVA_00735 [Bacteroides ovatus ATCC 8483]
 gi|156111798|gb|EDO13543.1| hypothetical protein BACOVA_00735 [Bacteroides ovatus ATCC 8483]
          Length = 471

 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 42/93 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  DL   ++ +  +++KD+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T +  +I     V F   + L+  I
Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTI 93


>gi|260170243|ref|ZP_05756655.1| putative integration host factor IHF alpha subunit [Bacteroides
          sp. D2]
 gi|315918606|ref|ZP_07914846.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692481|gb|EFS29316.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 470

 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 42/93 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  DL   ++ +  +++KD+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T +  +I     V F   + L+  I
Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTI 93


>gi|237720680|ref|ZP_04551161.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449515|gb|EEO55306.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 470

 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 42/93 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  DL   ++ +  +++KD+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T +  +I     V F   + L+  I
Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTI 93


>gi|255009783|ref|ZP_05281909.1| integration host factor, beta subunit [Bacteroides fragilis
          3_1_12]
 gi|313147572|ref|ZP_07809765.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
 gi|313136339|gb|EFR53699.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
          Length = 97

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +L+ +I++   +++ D    + T F+   ++   G++I I  F T   K++ ++V 
Sbjct: 1  MTKQELINTIAERAEINKIDVEHAINTAFDVAKETIANGDSIFIRGFGTLSPKRRQAKVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN+     V +    V  FK     K ++
Sbjct: 61 RNITAGTSVVVPETIVPHFKPCKAFKGQV 89


>gi|217034118|ref|ZP_03439538.1| hypothetical protein HP9810_868g11 [Helicobacter pylori 98-10]
 gi|216943402|gb|EEC22858.1| hypothetical protein HP9810_868g11 [Helicobacter pylori 98-10]
          Length = 94

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DLVK   K    S++++   +T     +  +  +GE++++  F  F   ++  + G+   
Sbjct: 8  DLVKEAGKY--NSKREAEEAITAFTLAVQTALSKGESVELVGFGKFETAEQKGKEGKVPG 65

Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMD 95
          +++  K + +RV  FK   ILK+++ +
Sbjct: 66 SDKTYKTEDKRVPKFKPGKILKQKVGE 92


>gi|119774748|ref|YP_927488.1| HU family DNA-binding protein [Shewanella amazonensis SB2B]
 gi|119767248|gb|ABL99818.1| DNA-binding protein, HU family [Shewanella amazonensis SB2B]
          Length = 91

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 43/89 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L K I+   G+S+ ++ R +  +   I  +   GE + +  F TF ++    R  
Sbjct: 1  MNKATLTKFIANTTGVSQPEAKRQLEQILASIRQALEEGETLYLPQFGTFELRYHLPRQV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + +++       FK +  LK+ I
Sbjct: 61 RNPKTGELMEVAGFNQPSFKPAPALKQLI 89


>gi|291613626|ref|YP_003523783.1| histone family protein DNA-binding protein [Sideroxydans
          lithotrophicus ES-1]
 gi|291583738|gb|ADE11396.1| histone family protein DNA-binding protein [Sideroxydans
          lithotrophicus ES-1]
          Length = 98

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRS+L++ + S+   L+  D    V  + ++I         ++I  F TF    +  R 
Sbjct: 1  MTRSELIQQLASRHPELTSNDIEMSVRLILDKISSVLENKARVEIRGFGTFATLHRPPRN 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          G N +T + VK+  + V  F+A   L+ R+
Sbjct: 61 GHNPKTGKVVKVPAKYVPHFRAGKELRVRV 90


>gi|332673359|gb|AEE70176.1| DNA-binding protein HU [Helicobacter pylori 83]
          Length = 94

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DLVK   K    S++++   +T     +  +  +GE++++  F  F   ++  + G+   
Sbjct: 8  DLVKEAGKY--NSKREAEEAITAFTLAVQTALSKGESVELVGFGKFETAEQKGKEGKVPG 65

Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMD 95
          +++  K + +RV  FK   ILK+++ +
Sbjct: 66 SDKTYKTEDKRVPKFKPGKILKQKVEE 92


>gi|261837934|gb|ACX97700.1| histone-like DNA-binding protein HU [Helicobacter pylori 51]
 gi|317177333|dbj|BAJ55122.1| dna-binding protein hu [Helicobacter pylori F16]
          Length = 94

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DLVK   K    S++++   +T     +  +  +GE++++  F  F   ++  + G+   
Sbjct: 8  DLVKEAGKY--NSKREAEEAITAFTLAVQTALSKGESVELVGFGKFETAEQKGKEGKVPG 65

Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMD 95
          +++  K + +RV  FK   ILK+++ +
Sbjct: 66 SDKTYKTEDKRVPKFKPGKILKQKVEE 92


>gi|331004374|ref|ZP_08327847.1| hypothetical protein HMPREF0491_02709 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330411104|gb|EGG90523.1| hypothetical protein HMPREF0491_02709 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 93

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 5  ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + R++LV +++K+ G  +++K+    + +  + + +       I++  F TF    + +R
Sbjct: 1  MNRTELVDAMAKKMGNSVTKKEVESALKSFVDVVTEELSNKGKIQLVGFGTFETSVRPAR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN +T + +KI    V  FK    LK
Sbjct: 61 EGRNPRTGETMKIAESVVPKFKPGKALK 88


>gi|297159968|gb|ADI09680.1| DNA-binding protein HU 1 [Streptomyces bingchenggensis BCW-1]
          Length = 93

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV ++S+   ++RKD+   +  L     +   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALSERAEVTRKDADAVLAALAEVTGEIVAKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN QT + ++I     V   A S LK+
Sbjct: 61 ARNPQTGEPIEIPAGYSVKVSAGSKLKE 88


>gi|189220184|ref|YP_001940824.1| nucleoid DNA-binding protein [Methylacidiphilum infernorum V4]
 gi|189187042|gb|ACD84227.1| Bacterial nucleoid DNA-binding protein [Methylacidiphilum
          infernorum V4]
          Length = 99

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 8/96 (8%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRF-----VTTLFNEICDSAVRGEAIKISSFATFHVK 57
          K   ++ LV+ + K  G   KD+T+      V  + N +    ++   +++  F TF V 
Sbjct: 7  KRFNKASLVEVVQKNMG---KDTTKALAEKSVDAVINGLKTGVLKNGIVQLIGFGTFRVI 63

Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           + +R+G N +T +++KI   + V F     LK+++
Sbjct: 64 TRKARMGVNPKTGEKIKIKASKTVRFSPGKELKEKL 99


>gi|162146745|ref|YP_001601204.1| DNA-binding protein HU-alpha [Gluconacetobacter diazotrophicus
          PAl 5]
 gi|209543268|ref|YP_002275497.1| histone family protein DNA-binding protein [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|161785320|emb|CAP54866.1| putative DNA-binding protein HU-alpha [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209530945|gb|ACI50882.1| histone family protein DNA-binding protein [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 89

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 48 ISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          + SF TF VK+  +R   N +T + VK+   + V FKAS  LKK +
Sbjct: 44 LPSFGTFTVKKTKARKALNPRTGEPVKVKAGKTVRFKASPNLKKAV 89


>gi|23007144|ref|ZP_00049143.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magnetotacticum MS-1]
          Length = 74

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 30/51 (58%)

Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          G+ +++  F  F VK++ +R GRN +T + V +  + + VFK    ++ R+
Sbjct: 12 GDRVELRGFGAFSVKRREARRGRNPRTGESVSVSEKAIPVFKTGKEMRLRL 62


>gi|167725689|ref|ZP_02408925.1| DNA-binding protein Hu-beta [Burkholderia pseudomallei DM98]
          Length = 69

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 15/69 (21%), Positives = 35/69 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+ +++K   L++  + + V  + + I    +    + +S F TF +  + +R G
Sbjct: 1  MNKSQLIDAVAKHAELTKAQAAQSVDAVLDAIRTGLLEDGDVALSGFGTFGISARAARTG 60

Query: 65 RNLQTNQEV 73
          RN  T + +
Sbjct: 61 RNPATGEAI 69


>gi|315637348|ref|ZP_07892566.1| DNA-binding protein HU [Arcobacter butzleri JV22]
 gi|315478391|gb|EFU69106.1| DNA-binding protein HU [Arcobacter butzleri JV22]
          Length = 91

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ + +++ + GLS+KD+   V  + + I ++ V+ E++    F TF    + +R  
Sbjct: 1  MNKAEFIDAVAAKAGLSKKDAKGAVDAVLDTITEALVKKESVSFIGFGTFATAARAARTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +   T + V +    V  FK    LK+ +
Sbjct: 61 KVPGTTKTVDVPATTVAKFKVGKALKEAV 89


>gi|46201151|ref|ZP_00055681.2| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magnetotacticum MS-1]
          Length = 87

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 51 FATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          F TF   ++ +R GRN +T + ++I     + FKASS LKK
Sbjct: 47 FGTFSKSERPARQGRNPRTGKTIEIKASSTIKFKASSALKK 87


>gi|320334434|ref|YP_004171145.1| histone family protein DNA-binding protein [Deinococcus
           maricopensis DSM 21211]
 gi|319755723|gb|ADV67480.1| histone family protein DNA-binding protein [Deinococcus
           maricopensis DSM 21211]
          Length = 115

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 41/92 (44%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S  + ++ LV  ++    L+RK S   +      I  +   G+++ +    TF V+    
Sbjct: 24  SSKVGKTQLVDLVTDRTSLNRKQSAEAIDAALGIIVSALRDGKSVGLPGLGTFAVRATAE 83

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R G    T++ + I   + V FK +S LK  +
Sbjct: 84  RTGVKPGTSERITIAAGKKVGFKVASTLKGNL 115


>gi|312131596|ref|YP_003998936.1| histone family protein DNA-binding protein [Leadbetterella
          byssophila DSM 17132]
 gi|311908142|gb|ADQ18583.1| histone family protein DNA-binding protein [Leadbetterella
          byssophila DSM 17132]
          Length = 96

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 18/82 (21%), Positives = 41/82 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++++  IS++ G+ +  ++  +   F  + +    GEAI +  F +F  K++  +  
Sbjct: 1  MTKAEVISIISEKTGVDKAATSATIEAFFETVKEQLSGGEAIYVRGFGSFVNKKRAEKKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN+     V +    +  FK S
Sbjct: 61 RNISKKTTVTVPAHYIPSFKPS 82


>gi|108563246|ref|YP_627562.1| DNA-binding protein HU [Helicobacter pylori HPAG1]
 gi|107837019|gb|ABF84888.1| DNA-binding protein HU [Helicobacter pylori HPAG1]
          Length = 94

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRVGRNL 67
          DLVK   K    S K       + F    ++A+ +GE++++  F  F   ++  + G+  
Sbjct: 8  DLVKEAGK---YSSKREAEEAISAFTLAVETALSKGESVELVGFGKFETAEQKGKEGKVP 64

Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95
           +++  K + +RV  FK   ILK+++ +
Sbjct: 65 GSDKTYKTEDKRVPKFKPGKILKQKVEE 92


>gi|228982427|ref|ZP_04142686.1| DNA-binding protein HU [Bacillus thuringiensis Bt407]
 gi|228776610|gb|EEM24918.1| DNA-binding protein HU [Bacillus thuringiensis Bt407]
          Length = 94

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/89 (21%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ + +   LS+ ++   V T  N I ++   GE + +  F  F  K++ SR  
Sbjct: 1  MNKNELLEKMKERNRLSKSENQLAVDTFINIIYEALQNGEKVSLKGFGQFVTKERKSRNI 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R   + +EV++  + +  F+     K ++
Sbjct: 61 RIPSSEKEVRVPAKEIPAFEPGEEFKNKV 89


>gi|34580834|ref|ZP_00142314.1| DNA-binding protein HU [Rickettsia sibirica 246]
 gi|157828089|ref|YP_001494331.1| DNA-binding protein HU [Rickettsia rickettsii str. 'Sheila Smith']
 gi|238651025|ref|YP_002916882.1| DNA-binding protein HU [Rickettsia peacockii str. Rustic]
 gi|28262219|gb|EAA25723.1| DNA-binding protein HU [Rickettsia sibirica 246]
 gi|157800570|gb|ABV75823.1| DNA-binding protein HU [Rickettsia rickettsii str. 'Sheila Smith']
 gi|238625123|gb|ACR47829.1| DNA-binding protein HU [Rickettsia peacockii str. Rustic]
          Length = 110

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 20  LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
           L++ ++ + +  + + +  +      I I+ F +F +  + +R GRN +T  ++KID   
Sbjct: 36  LTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFEIHHRKAREGRNPKTGAKMKIDAYN 95

Query: 80  VVVFKASSILKK 91
              F+A   +K+
Sbjct: 96  QPTFRAGRKMKE 107


>gi|20137641|sp|Q92J57|DBH_RICCN RecName: Full=DNA-binding protein HU
          Length = 99

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
          L++ ++ + +  + + +  +      I I+ F +F +  + +R GRN +T  ++KID   
Sbjct: 25 LTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFEIHHRKAREGRNPKTGAKMKIDAYN 84

Query: 80 VVVFKASSILKK 91
             F+A   +K+
Sbjct: 85 QPTFRAGRKMKE 96


>gi|300727619|ref|ZP_07061008.1| DNA-binding protein HU [Prevotella bryantii B14]
 gi|299775139|gb|EFI71742.1| DNA-binding protein HU [Prevotella bryantii B14]
          Length = 521

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSK I  ++L K +     LS  D+ +FV  +F+ + +     + +KI  F TF V    
Sbjct: 1  MSK-IGVNELAKVLVNTHKLSVDDAEQFVRLMFDTVNEGLQEDKQVKIKGFGTFKVLSVK 59

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
           R   ++ T + + I+ R  + F   +I+K
Sbjct: 60 DRESVDVNTGERIIIEGRDKISFTPDAIVK 89


>gi|16126202|ref|NP_420766.1| DNA-binding protein HU [Caulobacter crescentus CB15]
 gi|221234973|ref|YP_002517409.1| DNA-binding protein HU [Caulobacter crescentus NA1000]
 gi|239977107|sp|B8GX11|DBH_CAUCN RecName: Full=DNA-binding protein HU
 gi|239977108|sp|P0CAV2|DBH_CAUCR RecName: Full=DNA-binding protein HU
 gi|13423420|gb|AAK23934.1| DNA-binding protein HU [Caulobacter crescentus CB15]
 gi|220964145|gb|ACL95501.1| DNA-binding protein HU [Caulobacter crescentus NA1000]
          Length = 92

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/88 (20%), Positives = 42/88 (47%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+++LV +I+++ G+++  +   +      + DS   G+ +++  F TF    + +   R
Sbjct: 3  TKAELVTAIAEKAGINKNQAKDALEAFIEAVTDSLKSGQDVRLVGFGTFKAVTRAAGTAR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93
          N +T + V     +   F+    LK  +
Sbjct: 63 NPRTGETVNRPASKTARFQVGEGLKSSL 90


>gi|332308727|ref|YP_004436577.1| histone family protein DNA-binding protein [Glaciecola
          agarilytica 4H-3-7+YE-5]
 gi|332176056|gb|AEE25309.1| histone family protein DNA-binding protein [Glaciecola
          agarilytica 4H-3-7+YE-5]
          Length = 92

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 16/86 (18%), Positives = 42/86 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  +++ ++   G++++++   +    + +  +    + + +  F  F  + +  R+G
Sbjct: 1  MNKQHVIEIMALASGITQREAKLALNAFTDAVQVTLQNNDKVSLVGFGNFSTRHRAERIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT + + I    +  FKAS  LK
Sbjct: 61 RNPQTGEPLTIPAATIPEFKASKCLK 86


>gi|255013881|ref|ZP_05286007.1| putative DNA-binding protein HU [Bacteroides sp. 2_1_7]
 gi|256839777|ref|ZP_05545286.1| integration host factor, beta subunit [Parabacteroides sp. D13]
 gi|262381911|ref|ZP_06075049.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298375536|ref|ZP_06985493.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
 gi|256738707|gb|EEU52032.1| integration host factor, beta subunit [Parabacteroides sp. D13]
 gi|262297088|gb|EEY85018.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298268036|gb|EFI09692.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
          Length = 100

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 41 VRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          V  + I +  F  F VK+K  R+  N    +   + P+ V VFK  + +K R+
Sbjct: 41 VDNDTIYLQGFGQFEVKKKAERISVNPANGKRYLVPPKLVPVFKPGTTVKNRL 93


>gi|281425613|ref|ZP_06256526.1| putative integration host factor IHF alpha subunit [Prevotella
          oris F0302]
 gi|281400200|gb|EFB31031.1| putative integration host factor IHF alpha subunit [Prevotella
          oris F0302]
          Length = 421

 Score = 34.7 bits (78), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 39/85 (45%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          D+ + +  + GL   D+  F+  + + I +   R   +KI    TF +    SR   ++ 
Sbjct: 11 DIARCLVDKHGLKVADAEHFIALMIDVINEGVQRERQVKIKGLGTFKLTSVSSRESVDVN 70

Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93
          T + + I+ R  + F   + +K+ +
Sbjct: 71 TGERIVIEGRDKISFTPDNAMKELV 95


>gi|260889031|ref|ZP_05900294.1| DNA-binding protein HU [Leptotrichia hofstadii F0254]
 gi|260861091|gb|EEX75591.1| DNA-binding protein HU [Leptotrichia hofstadii F0254]
          Length = 70

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 28 FVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKI 75
           V      +  + + G++++   + TF VK++ +R G N QT +E+KI
Sbjct: 1  MVNQFLETVEKTLLNGDSVQFVGWGTFEVKERAARTGINPQTKKEIKI 48


>gi|109947731|ref|YP_664959.1| histon like DNA-binding protein HU [Helicobacter acinonychis str.
          Sheeba]
 gi|109714952|emb|CAJ99960.1| histon like DNA-binding protein HU [Helicobacter acinonychis str.
          Sheeba]
          Length = 94

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DLVK +  EF  S++++   +      +  +  +GE++++  F  F   ++  + G+   
Sbjct: 8  DLVKEVG-EFN-SKREAEEVINAFTLAVETALSKGESVELIGFGKFETAEQKGKEGKVPG 65

Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93
          + +  K   +RV  FKA  ILK+++
Sbjct: 66 SGKTYKTKDKRVPKFKAGKILKQKV 90


>gi|116333199|ref|YP_794726.1| transcriptional accessory protein [Lactobacillus brevis ATCC 367]
 gi|116098546|gb|ABJ63695.1| Transcriptional accessory protein [Lactobacillus brevis ATCC 367]
          Length = 731

 Score = 34.7 bits (78), Expect = 4.6,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 15/105 (14%)

Query: 11  VKSISKEFGLSRKDSTRFVT------------TLFNEICDSAVRGEAIKISSFATFHVKQ 58
           V+ I+   G + ++S  FV+             L NE   S     A   + FA FHV++
Sbjct: 384 VEMIAIGNGTASRESEEFVSQILKTLNRPVYYVLVNEAGASVYSASANARAEFADFHVEE 443

Query: 59  KGS-RVGRNLQT--NQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           + +  +GR LQ    + +KIDP+ V V +    + K+ +D+   R
Sbjct: 444 RSAVSIGRRLQDPLAELIKIDPKAVGVGQYQHDVPKKALDEQLDR 488


>gi|294673497|ref|YP_003574113.1| HU family DNA-binding protein [Prevotella ruminicola 23]
 gi|294472549|gb|ADE81938.1| DNA-binding protein, HU family/extensin domain protein
          [Prevotella ruminicola 23]
          Length = 472

 Score = 34.7 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 43/89 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          I+  +L   + +   ++R+D++ FV+ +F+ +       + +K+    TF +     R  
Sbjct: 4  ISIQELANVLVERRKMNRRDASLFVSAMFDIVQQRLETDKLVKVKGLGTFKIIDVEDRES 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N+ T + V I+    + F   ++LK+ +
Sbjct: 64 VNVNTGERVLIEGHGKITFVPDALLKELV 92


>gi|297194088|ref|ZP_06911486.1| DNA-binding protein HU 1 [Streptomyces pristinaespiralis ATCC
          25486]
 gi|197720925|gb|EDY64833.1| DNA-binding protein HU 1 [Streptomyces pristinaespiralis ATCC
          25486]
          Length = 93

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV +++    ++RKD+   +  L   + +   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAALAETVGEVVAKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN QT   ++I     V   A S LK+
Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKE 88


>gi|306521780|ref|ZP_07408127.1| DNA-binding protein HU [Clostridium difficile QCD-32g58]
          Length = 64

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV-KIDPRRVVVFKASSILK 90
          + D+ V  E +++  F TF  +++ +R GRN +  ++V  I   +  VFKA   LK
Sbjct: 4  VQDALVNNEKVQLVGFGTFETRERAARQGRNPRDPEQVIDIPASKAPVFKAGKGLK 59


>gi|157737565|ref|YP_001490248.1| DNA-binding protein HU [Arcobacter butzleri RM4018]
 gi|157699419|gb|ABV67579.1| DNA-binding protein HU [Arcobacter butzleri RM4018]
          Length = 91

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ + +++ + GLS+KD+   V  + + I ++ V+ E++    F TF    + +R  
Sbjct: 1  MNKAEFIDAVATKAGLSKKDAKGAVDAVLDTITEALVKKESVSFIGFGTFATAARAARTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +   T + V +    V  FK    LK+ +
Sbjct: 61 KVPGTTKTVDVPATTVAKFKVGKALKEAV 89


>gi|189466861|ref|ZP_03015646.1| hypothetical protein BACINT_03242 [Bacteroides intestinalis DSM
          17393]
 gi|189435125|gb|EDV04110.1| hypothetical protein BACINT_03242 [Bacteroides intestinalis DSM
          17393]
          Length = 169

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          KT+    L  +I K   +++ D    +  L  E+ ++ V G  +K++ F TFH+
Sbjct: 33 KTVDVDTLAAAIQKSCAMTKGDVKHVIEALVEEVQENLVNGNKVKLNLFGTFHM 86


>gi|254779192|ref|YP_003057297.1| Histone-like DNA-binding protein HU [Helicobacter pylori B38]
 gi|308184622|ref|YP_003928755.1| DNA-binding protein HU [Helicobacter pylori SJM180]
 gi|254001103|emb|CAX29058.1| Histone-like DNA-binding protein HU [Helicobacter pylori B38]
 gi|308060542|gb|ADO02438.1| DNA-binding protein HU [Helicobacter pylori SJM180]
          Length = 94

 Score = 34.7 bits (78), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRVGRNL 67
          DLVK   K    S K       + F    ++A+ +GE++++  F  F   ++  + G+  
Sbjct: 8  DLVKEAGK---YSSKREAEEAISAFTLAVETALSKGESVELIGFGKFETAEQKGKEGKVP 64

Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95
           +++  K + +RV  FK   ILK+++ +
Sbjct: 65 GSDKTYKTEDKRVPKFKPGKILKQKVEE 92


>gi|150007590|ref|YP_001302333.1| putative DNA-binding protein HU [Parabacteroides distasonis ATCC
          8503]
 gi|301310444|ref|ZP_07216383.1| DNA-binding protein HU [Bacteroides sp. 20_3]
 gi|149936014|gb|ABR42711.1| putative DNA-binding protein HU [Parabacteroides distasonis ATCC
          8503]
 gi|300832018|gb|EFK62649.1| DNA-binding protein HU [Bacteroides sp. 20_3]
          Length = 96

 Score = 34.7 bits (78), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 41 VRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          V  + I +  F  F VK+K  R+  N    +   + P+ V VFK  + +K R+
Sbjct: 37 VDNDTIYLQGFGQFEVKKKAERISVNPANGKRYLVPPKLVPVFKPGTTVKNRL 89


>gi|153806287|ref|ZP_01958955.1| hypothetical protein BACCAC_00543 [Bacteroides caccae ATCC 43185]
 gi|149130964|gb|EDM22170.1| hypothetical protein BACCAC_00543 [Bacteroides caccae ATCC 43185]
          Length = 435

 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 42/93 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  DL   ++ +  +++KD+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNERLTIQDLTDLLAAKHSMTKKDAEVFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          SR   N+ T +  +I     V F   + L+  I
Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTI 93


>gi|39938803|ref|NP_950569.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
 gi|39938843|ref|NP_950609.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
 gi|39721912|dbj|BAD04402.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
          OY-M]
 gi|39721952|dbj|BAD04442.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
          OY-M]
          Length = 96

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGSRV 63
          +T+ +L+K I++    S   +  F       + ++    E + +S     F +K + + +
Sbjct: 1  MTKKELIKKIAEVNKTSISKTEEFYHIFEKTLIEAITTNEEVVLSPQIGKFQLKPRKAYI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T +++KI  + VV FK S  +K
Sbjct: 61 GRNPKTKKKLKIPAKTVVAFKLSKSIK 87


>gi|296273437|ref|YP_003656068.1| histone family protein DNA-binding protein [Arcobacter
          nitrofigilis DSM 7299]
 gi|296097611|gb|ADG93561.1| histone family protein DNA-binding protein [Arcobacter
          nitrofigilis DSM 7299]
          Length = 91

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ + +++ + GLS+KD+   V ++   I ++ V+ E++    F TF    + +R  
Sbjct: 1  MNKAEFIDAVATKAGLSKKDAKCAVDSVLETITETLVKNESVSFIGFGTFSTAARAARTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +   T++ V +    V  FK    LK+ +
Sbjct: 61 KVPGTDRTVDVKATTVAKFKVGKALKEAV 89


>gi|158522867|ref|YP_001530737.1| histone family protein DNA-binding protein [Desulfococcus
          oleovorans Hxd3]
 gi|158511693|gb|ABW68660.1| histone family protein DNA-binding protein [Desulfococcus
          oleovorans Hxd3]
          Length = 90

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/94 (21%), Positives = 48/94 (51%), Gaps = 5/94 (5%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA-IKISSFATFHVKQKGSRV 63
          +T+++L+  ++ +  +++  + + +    + +  +  + E  + +  F TF    + +R 
Sbjct: 1  MTKAELIDKMAADAKITKMAAGKALDAFMDGVTKALKKKEGKVTLVGFGTFAKAHRKART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN QT + +KI    VV F+      K++ DD+
Sbjct: 61 GRNPQTGKPIKIKACNVVKFRPG----KKLRDDV 90


>gi|253578053|ref|ZP_04855325.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850371|gb|EES78329.1| predicted protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 209

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 41/87 (47%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+T+S  ++ +++   L  KD+      +F E+      G  IK   F TF    + +R
Sbjct: 113 RTLTQSAFIRRLARSNDLQIKDADIITKQVFRELISCLKDGFCIKFEGFGTFGTYTRKAR 172

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSIL 89
             ++  T +   I  + VV FK S+ L
Sbjct: 173 SVKHPVTQERCTIKEKAVVKFKPSAKL 199


>gi|148259522|ref|YP_001233649.1| histone family protein DNA-binding protein [Acidiphilium cryptum
          JF-5]
 gi|326402729|ref|YP_004282810.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301]
 gi|146401203|gb|ABQ29730.1| histone family protein DNA-binding protein [Acidiphilium cryptum
          JF-5]
 gi|325049590|dbj|BAJ79928.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301]
          Length = 89

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 38/80 (47%)

Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV 73
          I    G++   + R  T +   I     +     + SF TF V++  +R G N ++ + +
Sbjct: 10 IQNSTGITGVAANRAATDVIEAIVKELKKKGKFTLPSFGTFTVRKTKARKGVNPRSGEPI 69

Query: 74 KIDPRRVVVFKASSILKKRI 93
          K+   + V FK+S  LK R+
Sbjct: 70 KVKAGKTVRFKSSPTLKTRV 89


>gi|254389768|ref|ZP_05004992.1| DNA-binding protein HU [Streptomyces clavuligerus ATCC 27064]
 gi|294812896|ref|ZP_06771539.1| DNA-binding protein HU 1 [Streptomyces clavuligerus ATCC 27064]
 gi|326441327|ref|ZP_08216061.1| DNA-binding protein HU 1 [Streptomyces clavuligerus ATCC 27064]
 gi|197703479|gb|EDY49291.1| DNA-binding protein HU [Streptomyces clavuligerus ATCC 27064]
 gi|294325495|gb|EFG07138.1| DNA-binding protein HU 1 [Streptomyces clavuligerus ATCC 27064]
          Length = 93

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV +++    ++RKD+   +  L   + +   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAALAETVGEIVAKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN QT   ++I     V   A S LK+
Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKE 88


>gi|15892135|ref|NP_359849.1| DNA-binding protein HU [Rickettsia conorii str. Malish 7]
 gi|15619264|gb|AAL02750.1| DNA-binding protein HU [Rickettsia conorii str. Malish 7]
          Length = 139

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 20  LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
           L++ ++ + +  + + +  +      I I+ F +F +  + +R GRN +T  ++KID   
Sbjct: 65  LTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFEIHHRKAREGRNPKTGAKMKIDAYN 124

Query: 80  VVVFKASSILKK 91
              F+A   +K+
Sbjct: 125 QPTFRAGRKMKE 136


>gi|268316438|ref|YP_003290157.1| histone family protein DNA-binding protein [Rhodothermus marinus
          DSM 4252]
 gi|262333972|gb|ACY47769.1| histone family protein DNA-binding protein [Rhodothermus marinus
          DSM 4252]
          Length = 131

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFN------EICDSAVRGEAIKISSFATFHVK 57
          T+T+ D+ + +++  G     S  +V  +        E  D  VR   I++  F  F VK
Sbjct: 7  TLTKKDVARRVAQLMGEPIYKSEPWVNAVIEALAQLLEEADPEVR---IELRDFGVFEVK 63

Query: 58 QKGSRV-GRNLQTNQEVKIDPRRVVVFKASSILKK 91
          +  ++   RN +TN+ V I  RR   FK S  LK+
Sbjct: 64 RTRAKPKARNPKTNETVFIPSRRKTHFKPSKRLKQ 98


>gi|239918394|ref|YP_002957952.1| bacterial nucleoid DNA-binding protein [Micrococcus luteus NCTC
          2665]
 gi|289707035|ref|ZP_06503366.1| DNA-binding protein HU [Micrococcus luteus SK58]
 gi|239839601|gb|ACS31398.1| bacterial nucleoid DNA-binding protein [Micrococcus luteus NCTC
          2665]
 gi|289556221|gb|EFD49581.1| DNA-binding protein HU [Micrococcus luteus SK58]
          Length = 93

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 39/86 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +LV ++++  G ++   +  +  LF        +GE + I  +      ++  R G
Sbjct: 3  MNRKELVAAVAERSGNTQAAVSDVLDALFEVFTAQVKKGEKVSIPGWLAVERTERKERTG 62

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E+ I     V   A S LK
Sbjct: 63 RNPRTGEEITIPAGHSVKVTAGSKLK 88


>gi|165932789|ref|YP_001649578.1| DNA-binding protein HU [Rickettsia rickettsii str. Iowa]
 gi|165907876|gb|ABY72172.1| DNA-binding protein HU [Rickettsia rickettsii str. Iowa]
          Length = 139

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 20  LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
           L++ ++ + +  + + +  +      I I+ F +F +  + +R GRN +T  ++KID   
Sbjct: 65  LTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFEIHHRKAREGRNPKTGAKMKIDAYN 124

Query: 80  VVVFKASSILKK 91
              F+A   +K+
Sbjct: 125 QPTFRAGRKMKE 136


>gi|157964238|ref|YP_001499062.1| DNA-binding protein HU [Rickettsia massiliae MTU5]
 gi|157844014|gb|ABV84515.1| DNA-binding protein HU [Rickettsia massiliae MTU5]
          Length = 139

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 20  LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
           L++ ++ + +  + + +  +      I I+ F +F +  + +R GRN +T  ++KID   
Sbjct: 65  LTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFEIHHRKAREGRNPKTGAKMKIDAYN 124

Query: 80  VVVFKASSILKK 91
              F+A   +K+
Sbjct: 125 QPTFRAGRKMKE 136


>gi|88606926|ref|YP_505361.1| DNA-binding protein HU [Anaplasma phagocytophilum HZ]
 gi|88597989|gb|ABD43459.1| DNA-binding protein HU [Anaplasma phagocytophilum HZ]
          Length = 91

 Score = 34.3 bits (77), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSK I    +V+++    G ++KDS+     + + I  +     +I++ +  T HV Q  
Sbjct: 1  MSKEI----IVRALMSGLGFTKKDSSSAYDVVMSAIKTALETNHSIRLHNVGTLHVIQCA 56

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86
           +   N +T     + P+R V F++S
Sbjct: 57 EKKYHNPKTGHLETLPPKRRVRFRSS 82


>gi|256379997|ref|YP_003103657.1| histone family protein DNA-binding protein [Actinosynnema mirum
          DSM 43827]
 gi|255924300|gb|ACU39811.1| histone family protein DNA-binding protein [Actinosynnema mirum
          DSM 43827]
          Length = 285

 Score = 34.3 bits (77), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L++++++  G  +K++   V  + + I  S  +GE + I+ F  F  + + +R  
Sbjct: 1  MNKAQLIEALAERLG-DKKNAAAAVDGIVDVIVRSVHKGEKVNITGFGVFEKRARAARTA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T + VK+    V  F+A S  K
Sbjct: 60 RNPRTGETVKVKKTNVPAFRAGSTFK 85


>gi|281415410|ref|ZP_06247152.1| bacterial nucleoid DNA-binding protein [Micrococcus luteus NCTC
          2665]
          Length = 91

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 39/86 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +LV ++++  G ++   +  +  LF        +GE + I  +      ++  R G
Sbjct: 1  MNRKELVAAVAERSGNTQAAVSDVLDALFEVFTAQVKKGEKVSIPGWLAVERTERKERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN +T +E+ I     V   A S LK
Sbjct: 61 RNPRTGEEITIPAGHSVKVTAGSKLK 86


>gi|281419889|ref|ZP_06250888.1| putative integration host factor IHF alpha subunit [Prevotella
          copri DSM 18205]
 gi|281406016|gb|EFB36696.1| putative integration host factor IHF alpha subunit [Prevotella
          copri DSM 18205]
          Length = 479

 Score = 33.9 bits (76), Expect = 7.0,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA-IKISSFATFHVKQK 59
          MSK  + + L K ++ + GLS+ ++  F+  +F ++C+  +  +  +KI    TF V+  
Sbjct: 1  MSK-FSLNTLGKLLADKSGLSQVEAELFIRKMF-DVCNQGLDADKQVKIKWLGTFKVQAT 58

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
            R   N+ T +   I+ R  + F   +ILK+
Sbjct: 59 KDRESINVNTGERFTIEGRDKLTFTPDNILKE 90


>gi|3641282|gb|AAC36331.1| histone-like protein [Caulobacter crescentus CB15]
          Length = 92

 Score = 33.9 bits (76), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 18/88 (20%), Positives = 41/88 (46%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+++LV +I+++ G+++  +   +      + DS   G+ +++  F TF    + +   R
Sbjct: 3  TKAELVTAIAEKAGINKNQAKDALEAFIEAVTDSLKSGQDVRLVGFGTFKAVTRAAGTAR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93
          N +T + V         F+    LK  +
Sbjct: 63 NPRTGETVNRPASNTARFQVGEGLKSSL 90


>gi|315586499|gb|ADU40880.1| DNA-binding protein HU [Helicobacter pylori 35A]
          Length = 94

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 19/87 (21%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DLVK   K    S++++   ++     +  +  +GE++++  F  F   ++  + G+   
Sbjct: 8  DLVKEAGKY--NSKREAEEAISAFILAVETALSKGESVELVGFGKFETAEQKGKEGKVPG 65

Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMD 95
          +++  K + +RV  FK   ILK+++ +
Sbjct: 66 SDKTYKTEDKRVPKFKPGKILKQKVEE 92


>gi|254446217|ref|ZP_05059693.1| DNA-binding protein HU [Verrucomicrobiae bacterium DG1235]
 gi|198260525|gb|EDY84833.1| DNA-binding protein HU [Verrucomicrobiae bacterium DG1235]
          Length = 104

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 45  AIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           AI++  F TF V ++ +R G N  T + +KI   + V FKA + LK ++
Sbjct: 56  AIQLVGFGTFSVGKRSARTGINPLTKEPLKIKASKNVKFKAGAGLKDQL 104


>gi|167646806|ref|YP_001684469.1| histone family protein DNA-binding protein [Caulobacter sp. K31]
 gi|167349236|gb|ABZ71971.1| histone family protein DNA-binding protein [Caulobacter sp. K31]
          Length = 92

 Score = 33.9 bits (76), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 18/85 (21%), Positives = 41/85 (48%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+++LV +I+++ G+++  +   +    + +  S   GE +++  F TF    + +   R
Sbjct: 3  TKAELVTAIAEKAGINKNQAKDALEAFIDAVTTSLKAGEDVRLVGFGTFKAVARAAGTAR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90
          N +T + V     +   F+    LK
Sbjct: 63 NPRTGETVNRPASKTARFQVGEGLK 87


>gi|39938888|ref|NP_950654.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
 gi|39721997|dbj|BAD04487.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
          OY-M]
          Length = 96

 Score = 33.9 bits (76), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS-SFATFHVKQKGSRV 63
          +T+ +L+K I++    S   +  F       + ++    E + +S     F +K + + +
Sbjct: 1  MTKKELIKKIAEVNKTSISKTEEFYNIFEKTLIEAITTNEEVVLSPQIGKFKLKSRKAYI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +++KI  + VV FK S  +K ++
Sbjct: 61 GRNPKTKKKLKIPAKTVVTFKLSKNIKDQV 90


>gi|241518439|ref|YP_002979067.1| histone family protein DNA-binding protein [Rhizobium
          leguminosarum bv. trifolii WSM1325]
 gi|240862852|gb|ACS60516.1| histone family protein DNA-binding protein [Rhizobium
          leguminosarum bv. trifolii WSM1325]
          Length = 92

 Score = 33.9 bits (76), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 19/85 (22%), Positives = 35/85 (41%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+ +  L++      V  +   I  +A+ G    +  F  F VK    R  R
Sbjct: 3  TTNEIADKIAGDHSLTKAQGKAIVEAVIASITQAAMDGNETSLPGFGKFKVKATPEREAR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90
          N  T   +K+   + + F  +  LK
Sbjct: 63 NPATGATIKVAAAKKLAFTPAKALK 87


>gi|328882764|emb|CCA56003.1| Non-specific DNA-binding protein HBsu [Streptomyces venezuelae
          ATCC 10712]
          Length = 93

 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV +++    ++RKD+   +  L   + +   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAALAETVGEVVAKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN QT   + I     V   A S LK+
Sbjct: 61 ARNPQTGDPIDIPAGYSVKVSAGSKLKE 88


>gi|255009411|ref|ZP_05281537.1| putative integration host factor IHF alpha subunit [Bacteroides
          fragilis 3_1_12]
 gi|313147170|ref|ZP_07809363.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135937|gb|EFR53297.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 467

 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  +LV  +    G+ +KD+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNERLTIQNLVDLLVSRHGVPQKDADVFVREFFLLIEQALENDQYVKIKGLGTFKLIGVN 60

Query: 61 SRVGRNLQTNQEVKID 76
          SR   N+ T + +KI+
Sbjct: 61 SRESVNINTGERIKIE 76


>gi|86608376|ref|YP_477138.1| DNA-binding protein HU [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556918|gb|ABD01875.1| DNA-binding protein HU [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 101

 Score = 33.9 bits (76), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTT----LFNEICDSAVRGEA---IKISSFATFHVK 57
          + +++LV +++    +++K++   ++     +  E+      GE    + +  F +F  +
Sbjct: 1  MNKAELVDAVAHRANVTKKEAEAVISAALEIIVEEVASRDENGEPKGKVILVGFGSFEAR 60

Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKAS 86
          ++  R GRN +TNQ++ I  R V  F A 
Sbjct: 61 KRKEREGRNPKTNQKMVIPERIVPTFAAG 89


>gi|39938549|ref|NP_950315.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
 gi|39721658|dbj|BAD04148.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
          OY-M]
          Length = 96

 Score = 33.9 bits (76), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGSRV 63
          +T+ +L+K  ++    S   +  F     N +  +    E + +S     F +K + + +
Sbjct: 1  MTKKELIKKTAEVNKTSISKTEEFYHIFENTLIKAITTNEEVVLSPQIGKFQLKPRKAYI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T +++KI  + VV FK S  +K
Sbjct: 61 GRNPKTKKKLKIPAKTVVAFKLSKSIK 87


>gi|317014245|gb|ADU81681.1| DNA-binding protein HU [Helicobacter pylori Gambia94/24]
          Length = 96

 Score = 33.9 bits (76), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRVGRNL 67
          DLVK   K    + K         F    ++A+ +GE++++  F  F   ++  + G+  
Sbjct: 8  DLVKEAGK---YNSKREAEEAINAFTLAVETALSKGESVELIGFGKFETAEQKGKEGKVP 64

Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           +++  K + +RV  FK   ILK+++ +  R
Sbjct: 65 GSDKTYKTEDKRVPKFKPGKILKQKVEEGKR 95


>gi|222475030|ref|YP_002563445.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale
          str. Florida]
 gi|254994876|ref|ZP_05277066.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale
          str. Mississippi]
 gi|255003010|ref|ZP_05277974.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale
          str. Puerto Rico]
 gi|255004136|ref|ZP_05278937.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale
          str. Virginia]
 gi|269958917|ref|YP_003328706.1| DNA-binding protein HU [Anaplasma centrale str. Israel]
 gi|222419166|gb|ACM49189.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale
          str. Florida]
 gi|269848748|gb|ACZ49392.1| DNA-binding protein HU [Anaplasma centrale str. Israel]
          Length = 91

 Score = 33.9 bits (76), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSK I    +V+++    G ++KDS+     + + +  +     +I++ +  T HV Q  
Sbjct: 1  MSKEI----IVRALMSNLGFTKKDSSSAYDVVMSAVKTALETNHSIRLHNVGTLHVIQCA 56

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86
           +   N +T +   + P+R V F++S
Sbjct: 57 EKKYHNPKTGRLETLPPKRRVRFRSS 82


>gi|298385402|ref|ZP_06994960.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
 gi|298261543|gb|EFI04409.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
          Length = 91

 Score = 33.9 bits (76), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 39/85 (45%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          ++V+ +     +SR  + + V  +F+ I +S  RGE++ I  FAT        +  RN+ 
Sbjct: 5  EIVEHVINNTTISRSQAIQAVDCVFDAIENSLCRGESVYIRGFATIKAHTSKRKKARNIS 64

Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93
              V I  +R      S  LK R+
Sbjct: 65 KGTTVVIPAQRSAKLIISKQLKARM 89


>gi|182438375|ref|YP_001826094.1| putative DNA-binding protein HU 1 [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|239941634|ref|ZP_04693571.1| putative DNA-binding protein HU 1 [Streptomyces roseosporus NRRL
          15998]
 gi|239988096|ref|ZP_04708760.1| putative DNA-binding protein HU 1 [Streptomyces roseosporus NRRL
          11379]
 gi|282865174|ref|ZP_06274227.1| histone family protein DNA-binding protein [Streptomyces sp.
          ACTE]
 gi|291445076|ref|ZP_06584466.1| DNA-binding protein Hu 1 [Streptomyces roseosporus NRRL 15998]
 gi|326779026|ref|ZP_08238291.1| histone family protein DNA-binding protein [Streptomyces cf.
          griseus XylebKG-1]
 gi|178466891|dbj|BAG21411.1| putative DNA-binding protein Hu 1 [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|282560097|gb|EFB65646.1| histone family protein DNA-binding protein [Streptomyces sp.
          ACTE]
 gi|291348023|gb|EFE74927.1| DNA-binding protein Hu 1 [Streptomyces roseosporus NRRL 15998]
 gi|320010510|gb|ADW05360.1| histone family protein DNA-binding protein [Streptomyces
          flavogriseus ATCC 33331]
 gi|326659359|gb|EGE44205.1| histone family protein DNA-binding protein [Streptomyces cf.
          griseus XylebKG-1]
          Length = 93

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV +++    ++RKD+   +  L   + +   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAALAETVGEIVAKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN QT   + I     V   A S LK+
Sbjct: 61 ARNPQTGDPINIPAGYSVKVSAGSKLKE 88


>gi|317011056|gb|ADU84803.1| DNA-binding protein HU [Helicobacter pylori SouthAfrica7]
          Length = 94

 Score = 33.5 bits (75), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 6/89 (6%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFH-VKQKGSRVGRN 66
          DLVK   K    + K         F    ++A+ +GE++++  F  F  V+QKG + G+ 
Sbjct: 8  DLVKEAGK---YNSKREAEEAINAFTLAVETALSKGESVELIGFGKFETVEQKG-KEGKV 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            +++  K + +RV  FKA  ILK+++ +
Sbjct: 64 PGSDKTYKTEDKRVPKFKAGKILKQKVEE 92


>gi|288927532|ref|ZP_06421379.1| integration host factor IHF alpha subunit [Prevotella sp. oral
          taxon 317 str. F0108]
 gi|288330366|gb|EFC68950.1| integration host factor IHF alpha subunit [Prevotella sp. oral
          taxon 317 str. F0108]
          Length = 638

 Score = 33.5 bits (75), Expect = 9.6,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 42/90 (46%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+  +   +L  ++  +  LS K++  FV T+F+ +       + +K+    TF V    
Sbjct: 5  MNNRVGIRELAMALVNKNKLSLKEAENFVATMFDTLNVGLNDDKQVKLKGLGTFKVMSVS 64

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          +R   ++ T + + ID R  + F   S +K
Sbjct: 65 ARKSVDVNTGEPIIIDGRDKISFTPDSTMK 94


>gi|14195649|sp|Q9ZDZ2|DBH_RICPR RecName: Full=DNA-binding protein HU
          Length = 99

 Score = 33.5 bits (75), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 16/72 (22%), Positives = 35/72 (48%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
          L++ D+ + +  +   +  +      + ++ F +F +  +  R GRN +T  ++KID   
Sbjct: 25 LTKADAEKALNLVIESVISAIKSKHNVNLTGFGSFEIHHRKEREGRNPKTGAKMKIDAYN 84

Query: 80 VVVFKASSILKK 91
             F+A   LK+
Sbjct: 85 QPTFRAGRKLKE 96


Searching..................................................done


Results from round 2




>gi|254780496|ref|YP_003064909.1| integration host factor subunit alpha [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040173|gb|ACT56969.1| integration host factor subunit alpha [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 114

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG
Sbjct: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY 114
           SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY
Sbjct: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY 114


>gi|212638931|ref|YP_002315451.1| DNA-binding protein HU-alpha (histone-like protein) [Anoxybacillus
           flavithermus WK1]
 gi|212560411|gb|ACJ33466.1| DNA-binding protein HU-alpha (histone-like protein) [Anoxybacillus
           flavithermus WK1]
          Length = 101

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 56/90 (62%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L+ ++++  GLS+KD+++ V  +F+ I ++   G+ +++  F  F V+++ +R G
Sbjct: 12  MNKTELINAVAEASGLSKKDASKAVDAVFDAITEALKNGDKVQLIGFGNFEVRERAARKG 71

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN QT +E++I   +V  FK    LK  + 
Sbjct: 72  RNPQTGEEIEIAASKVPAFKPGKALKDAVK 101


>gi|315658244|ref|ZP_07911116.1| DNA-binding protein HU [Staphylococcus lugdunensis M23590]
 gi|315496573|gb|EFU84896.1| DNA-binding protein HU [Staphylococcus lugdunensis M23590]
          Length = 105

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 53/90 (58%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++DL+ +++++  L++K +   V  +F  I  S  +GE +++  F  F V+++ +R G
Sbjct: 16  MNKTDLINAVAEQADLTKKQAGSAVDAVFESIQTSLSKGEKVQLIGFGNFEVRERAARKG 75

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN QT +E++I   +V  FKA   LK  + 
Sbjct: 76  RNPQTGKEIEIPASKVPAFKAGKALKDAVK 105


>gi|30019658|ref|NP_831289.1| DNA-binding protein HU [Bacillus cereus ATCC 14579]
 gi|75764066|ref|ZP_00743668.1| DNA-binding protein HU [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|29895202|gb|AAP08490.1| DNA-binding protein HU [Bacillus cereus ATCC 14579]
 gi|74488445|gb|EAO52059.1| DNA-binding protein HU [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 114

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 56/90 (62%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++DL+ ++++   LS+KD+T+ V  +F+ I ++  +G+ +++  F  F V+++ +R G
Sbjct: 25  MNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKG 84

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN QT +E++I   +V  FK    LK  + 
Sbjct: 85  RNPQTGEEIEIAASKVPAFKPGKALKDAVK 114


>gi|118477063|ref|YP_894214.1| DNA-binding protein HU [Bacillus thuringiensis str. Al Hakam]
 gi|118416288|gb|ABK84707.1| bacterial nucleoid protein Hbs [Bacillus thuringiensis str. Al
           Hakam]
          Length = 117

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 56/90 (62%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++DL+ ++++   LS+KD+T+ V  +F+ I ++  +G+ +++  F  F V+++ +R G
Sbjct: 28  MNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKG 87

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN QT +E++I   +V  FK    LK  + 
Sbjct: 88  RNPQTGEEIEIAASKVPAFKPGKALKDAVK 117


>gi|227535136|ref|ZP_03965185.1| non-specific DNA-binding protein HBsu [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227187181|gb|EEI67248.1| non-specific DNA-binding protein HBsu [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 129

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 53/89 (59%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
            +++L++S++   GL++KD+T  V  +F  I DS  +G+ +++  F  F V+++ +R GR
Sbjct: 41  NKAELIESVATATGLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKGR 100

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N QT  E+KI   +V  FK    LK  + 
Sbjct: 101 NPQTGAEIKIPASKVPAFKPGKALKDAVK 129


>gi|65318875|ref|ZP_00391834.1| COG0776: Bacterial nucleoid DNA-binding protein [Bacillus anthracis
           str. A2012]
 gi|228938721|ref|ZP_04101325.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228951986|ref|ZP_04114083.1| DNA-binding protein HU [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228957885|ref|ZP_04119625.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228978213|ref|ZP_04138590.1| DNA-binding protein HU [Bacillus thuringiensis Bt407]
 gi|228984688|ref|ZP_04144861.1| DNA-binding protein HU [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|229043354|ref|ZP_04191072.1| DNA-binding protein HU [Bacillus cereus AH676]
 gi|229078792|ref|ZP_04211345.1| DNA-binding protein HU [Bacillus cereus Rock4-2]
 gi|229096101|ref|ZP_04227074.1| DNA-binding protein HU [Bacillus cereus Rock3-29]
 gi|229102213|ref|ZP_04232922.1| DNA-binding protein HU [Bacillus cereus Rock3-28]
 gi|229109065|ref|ZP_04238665.1| DNA-binding protein HU [Bacillus cereus Rock1-15]
 gi|229115057|ref|ZP_04244467.1| DNA-binding protein HU [Bacillus cereus Rock1-3]
 gi|229144208|ref|ZP_04272622.1| DNA-binding protein HU [Bacillus cereus BDRD-ST24]
 gi|229149807|ref|ZP_04278036.1| DNA-binding protein HU [Bacillus cereus m1550]
 gi|229178017|ref|ZP_04305389.1| DNA-binding protein HU [Bacillus cereus 172560W]
 gi|229183804|ref|ZP_04311021.1| DNA-binding protein HU [Bacillus cereus BGSC 6E1]
 gi|228599653|gb|EEK57256.1| DNA-binding protein HU [Bacillus cereus BGSC 6E1]
 gi|228605505|gb|EEK62954.1| DNA-binding protein HU [Bacillus cereus 172560W]
 gi|228633671|gb|EEK90271.1| DNA-binding protein HU [Bacillus cereus m1550]
 gi|228639216|gb|EEK95632.1| DNA-binding protein HU [Bacillus cereus BDRD-ST24]
 gi|228668197|gb|EEL23629.1| DNA-binding protein HU [Bacillus cereus Rock1-3]
 gi|228674343|gb|EEL29587.1| DNA-binding protein HU [Bacillus cereus Rock1-15]
 gi|228681114|gb|EEL35282.1| DNA-binding protein HU [Bacillus cereus Rock3-28]
 gi|228687061|gb|EEL40966.1| DNA-binding protein HU [Bacillus cereus Rock3-29]
 gi|228704474|gb|EEL56907.1| DNA-binding protein HU [Bacillus cereus Rock4-2]
 gi|228726002|gb|EEL77241.1| DNA-binding protein HU [Bacillus cereus AH676]
 gi|228775082|gb|EEM23475.1| DNA-binding protein HU [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228781230|gb|EEM29431.1| DNA-binding protein HU [Bacillus thuringiensis Bt407]
 gi|228801801|gb|EEM48678.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228807711|gb|EEM54233.1| DNA-binding protein HU [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228820962|gb|EEM66983.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 104

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 56/90 (62%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++DL+ ++++   LS+KD+T+ V  +F+ I ++  +G+ +++  F  F V+++ +R G
Sbjct: 15  MNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKG 74

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN QT +E++I   +V  FK    LK  + 
Sbjct: 75  RNPQTGEEIEIAASKVPAFKPGKALKDAVK 104


>gi|317128573|ref|YP_004094855.1| histone family protein DNA-binding protein [Bacillus
          cellulosilyticus DSM 2522]
 gi|315473521|gb|ADU30124.1| histone family protein DNA-binding protein [Bacillus
          cellulosilyticus DSM 2522]
          Length = 90

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  LS+KD+T  V  +F+ I  S   GE +++  F  F V+++ +R G
Sbjct: 1  MNKTELINAVAEKSDLSKKDATSAVDAVFDVITGSLQNGEKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I    V  FK    LK  + 
Sbjct: 61 RNPQTGEEIEIPASNVPAFKPGKALKDAVK 90


>gi|297584429|ref|YP_003700209.1| histone family protein DNA-binding protein [Bacillus
          selenitireducens MLS10]
 gi|297142886|gb|ADH99643.1| histone family protein DNA-binding protein [Bacillus
          selenitireducens MLS10]
          Length = 90

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   LS+KD+T  V  +F  I DS  +G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTELINAVAESADLSKKDATSAVDAVFEVITDSLKKGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I    V  FK    LK  + 
Sbjct: 61 RNPQTGEEIEIPASNVPAFKPGKALKDAVK 90


>gi|31789462|gb|AAP58576.1| putative DNA-binding protein [uncultured Acidobacteria bacterium]
          Length = 116

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 61/109 (55%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+++LV+ +++   L++KD+ R V  +F  I ++  +GE I++  F +F V+++G+R G
Sbjct: 1   MTKAELVEDVAEAAELTKKDAERLVEIVFESIIETLNQGEKIELRGFGSFRVRERGARRG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           RN +T   V I  +RV  FK    LK+ I +     + +     + S  
Sbjct: 61  RNPKTGDPVSIPAKRVPYFKPGKELKELINNSSHPHRSSDSTTGASSDE 109


>gi|56420750|ref|YP_148068.1| DNA-binding protein HU [Geobacillus kaustophilus HTA426]
 gi|138895793|ref|YP_001126246.1| DNA binding protein HU [Geobacillus thermodenitrificans NG80-2]
 gi|196248675|ref|ZP_03147375.1| histone family protein DNA-binding protein [Geobacillus sp.
          G11MC16]
 gi|261417947|ref|YP_003251629.1| histone family protein DNA-binding protein [Geobacillus sp.
          Y412MC61]
 gi|297529615|ref|YP_003670890.1| histone family protein DNA-binding protein [Geobacillus sp.
          C56-T3]
 gi|319767241|ref|YP_004132742.1| histone family protein DNA-binding protein [Geobacillus sp.
          Y412MC52]
 gi|61222554|sp|P0A3H0|DBH_BACST RecName: Full=DNA-binding protein HU; AltName: Full=DNA-binding
          protein II; AltName: Full=HB
 gi|61222555|sp|P0A3H1|DBH_BACCL RecName: Full=DNA-binding protein HU; AltName: Full=DNA-binding
          protein II; AltName: Full=HB
 gi|61222556|sp|P0A3H2|DBH_BACCA RecName: Full=DNA-binding protein HU; AltName: Full=DNA-binding
          protein II; AltName: Full=HB
 gi|1311345|pdb|1HUE|A Chain A, Histone-Like Protein
 gi|1311346|pdb|1HUE|B Chain B, Histone-Like Protein
 gi|4389195|pdb|1HUU|A Chain A, Dna-Binding Protein Hu From Bacillus Stearothermophilus
 gi|4389196|pdb|1HUU|B Chain B, Dna-Binding Protein Hu From Bacillus Stearothermophilus
 gi|4389197|pdb|1HUU|C Chain C, Dna-Binding Protein Hu From Bacillus Stearothermophilus
 gi|143065|gb|AAA22532.1| hubst [Geobacillus stearothermophilus]
 gi|143067|gb|AAA22533.1| hubcalx [Bacillus caldotenax]
 gi|143069|gb|AAA22534.1| hubcald [Bacillus caldolyticus]
 gi|1065992|dbj|BAA07273.1| DNA binding protein HU [Geobacillus stearothermophilus]
 gi|56380592|dbj|BAD76500.1| DNA-binding protein HU (DNA-binding protein II) [Geobacillus
          kaustophilus HTA426]
 gi|134267306|gb|ABO67501.1| DNA binding protein HU [Geobacillus thermodenitrificans NG80-2]
 gi|196211551|gb|EDY06310.1| histone family protein DNA-binding protein [Geobacillus sp.
          G11MC16]
 gi|261374404|gb|ACX77147.1| histone family protein DNA-binding protein [Geobacillus sp.
          Y412MC61]
 gi|297252867|gb|ADI26313.1| histone family protein DNA-binding protein [Geobacillus sp.
          C56-T3]
 gi|317112107|gb|ADU94599.1| histone family protein DNA-binding protein [Geobacillus sp.
          Y412MC52]
          Length = 90

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 57/90 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++  GLS+KD+T+ V  +F+ I ++  +G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTELINAVAETSGLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FK    LK  + 
Sbjct: 61 RNPQTGEEMEIPASKVPAFKPGKALKDAVK 90


>gi|239827506|ref|YP_002950130.1| histone family protein DNA-binding protein [Geobacillus sp.
          WCH70]
 gi|239807799|gb|ACS24864.1| histone family protein DNA-binding protein [Geobacillus sp.
          WCH70]
          Length = 90

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 56/90 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ ++++  GLS+KD+T+ V  +F  I ++  +G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAETSGLSKKDATKAVDAVFESITEALRKGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FK    LK  + 
Sbjct: 61 RNPQTGEEMEIPASKVPAFKPGKALKDAVK 90


>gi|251796413|ref|YP_003011144.1| histone family protein DNA-binding protein [Paenibacillus sp.
           JDR-2]
 gi|247544039|gb|ACT01058.1| histone family protein DNA-binding protein [Paenibacillus sp.
           JDR-2]
          Length = 103

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 54/93 (58%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           K + ++DL+  +++   LS+KD+T+ V  +F  I D+   G+ +++  F  F V+++ +R
Sbjct: 11  KQMNKTDLINKVAELSDLSKKDATKAVDAVFEAISDALQSGDKVQLVGFGNFEVRERQAR 70

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            GRN QT +E+ I   ++  FK    LK  + +
Sbjct: 71  KGRNPQTGEEIDIAASKMPAFKPGKSLKDLVSN 103


>gi|229552183|ref|ZP_04440908.1| non-specific DNA-binding protein HBsu [Lactobacillus rhamnosus
           LMS2-1]
 gi|229314485|gb|EEN80458.1| non-specific DNA-binding protein HBsu [Lactobacillus rhamnosus
           LMS2-1]
          Length = 104

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 53/89 (59%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
            +++L++S++   GL++KD+T  V  +F  I DS  +G+ +++  F  F V+++ +R GR
Sbjct: 16  NKAELIESVASATGLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKGR 75

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N QT  E+KI   +V  FK    LK  + 
Sbjct: 76  NPQTGAEIKIPASKVPAFKPGKALKDAVK 104


>gi|288555641|ref|YP_003427576.1| non-specific DNA-binding protein II (Hbsu-like protein) [Bacillus
          pseudofirmus OF4]
 gi|288546801|gb|ADC50684.1| non-specific DNA-binding protein II (Hbsu-like protein) [Bacillus
          pseudofirmus OF4]
          Length = 90

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 56/90 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ S+S++  LS+KD+++ V  +F+ I ++ V G  +++  F +F V+++ +R G
Sbjct: 1  MNKTDLINSVSEQADLSKKDASKAVDAVFDSITNALVEGGKVQLVGFGSFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT QE++I   +   FK    LK  + 
Sbjct: 61 RNPQTGQEIEIPATKNPAFKPGKQLKDAVN 90


>gi|207999|gb|AAA72912.1| HBsu protein [synthetic construct]
          Length = 98

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 56/91 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   LS+KD+T+ V ++F+ I D+   G+ I++  F  F V+++ +R G
Sbjct: 7  MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKG 66

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E++I   +V  FK    LK  +  
Sbjct: 67 RNPQTGEEIEIPASKVPAFKPGKALKDAVAG 97


>gi|152980190|ref|YP_001353183.1| integration host factor alpha-subunit [Janthinobacterium sp.
           Marseille]
 gi|151280267|gb|ABR88677.1| integration host factor alpha-subunit [Janthinobacterium sp.
           Marseille]
          Length = 165

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 61/96 (63%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            T+T+++L + + ++ GL+++++   V T F+EI ++  RGE++K+S F  F ++ K  R
Sbjct: 63  PTLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGESVKLSGFGNFQLRDKPQR 122

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            GRN +T +E+ I  RRVV F AS  LK  + D  +
Sbjct: 123 PGRNPKTGEEIPITARRVVTFHASQKLKGMVEDSSQ 158


>gi|16079336|ref|NP_390160.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|154686527|ref|YP_001421688.1| hypothetical protein RBAM_020950 [Bacillus amyloliquefaciens
          FZB42]
 gi|221310195|ref|ZP_03592042.1| hypothetical protein Bsubs1_12521 [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221314518|ref|ZP_03596323.1| hypothetical protein BsubsN3_12437 [Bacillus subtilis subsp.
          subtilis str. NCIB 3610]
 gi|221319440|ref|ZP_03600734.1| hypothetical protein BsubsJ_12363 [Bacillus subtilis subsp.
          subtilis str. JH642]
 gi|221323716|ref|ZP_03605010.1| hypothetical protein BsubsS_12492 [Bacillus subtilis subsp.
          subtilis str. SMY]
 gi|296332983|ref|ZP_06875440.1| hypothetical protein BSU6633_17908 [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305674913|ref|YP_003866585.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus subtilis subsp.
          spizizenii str. W23]
 gi|308174071|ref|YP_003920776.1| non-specific DNA-binding protein HBsu [Bacillus amyloliquefaciens
          DSM 7]
 gi|311068794|ref|YP_003973717.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus atrophaeus
          1942]
 gi|321311749|ref|YP_004204036.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus subtilis BSn5]
 gi|118263|sp|P08821|DBH1_BACSU RecName: Full=DNA-binding protein HU 1; AltName: Full=DNA-binding
          protein II; AltName: Full=HB
 gi|39936|emb|CAA36669.1| unnamed protein product [Bacillus subtilis subsp. subtilis str.
          JH642]
 gi|39938|emb|CAA47064.1| hbsu [Bacillus subtilis]
 gi|143071|gb|AAA22535.1| hubgl [Bacillus subtilis]
 gi|143073|gb|AAA22536.1| hubsub [Bacillus subtilis]
 gi|2634697|emb|CAB14195.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|154352378|gb|ABS74457.1| HupA [Bacillus amyloliquefaciens FZB42]
 gi|291484703|dbj|BAI85778.1| non-specific DNA-binding protein HBsu [Bacillus subtilis subsp.
          natto BEST195]
 gi|296149834|gb|EFG90726.1| hypothetical protein BSU6633_17908 [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305413157|gb|ADM38276.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus subtilis subsp.
          spizizenii str. W23]
 gi|307606935|emb|CBI43306.1| non-specific DNA-binding protein HBsu [Bacillus amyloliquefaciens
          DSM 7]
 gi|310869311|gb|ADP32786.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus atrophaeus
          1942]
 gi|320018023|gb|ADV93009.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus subtilis BSn5]
 gi|328552803|gb|AEB23295.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus
          amyloliquefaciens TA208]
 gi|328912401|gb|AEB63997.1| DNA-binding protein HU 1 [Bacillus amyloliquefaciens LL3]
 gi|383705|prf||1904151A DNA-binding protein HBsu
          Length = 92

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 56/91 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   LS+KD+T+ V ++F+ I D+   G+ I++  F  F V+++ +R G
Sbjct: 1  MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E++I   +V  FK    LK  +  
Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALKDAVAG 91


>gi|52080788|ref|YP_079579.1| non-specific DNA-binding protein HBsu signal recognition
          particle-like (SRP) component [Bacillus licheniformis
          ATCC 14580]
 gi|52786158|ref|YP_091987.1| Hbs [Bacillus licheniformis ATCC 14580]
 gi|319645255|ref|ZP_07999488.1| DNA-binding protein HU 1 [Bacillus sp. BT1B_CT2]
 gi|52003999|gb|AAU23941.1| non-specific DNA-binding protein HBsu signal recognition
          particle-like (SRP) component [Bacillus licheniformis
          ATCC 14580]
 gi|52348660|gb|AAU41294.1| Hbs [Bacillus licheniformis ATCC 14580]
 gi|317393064|gb|EFV73858.1| DNA-binding protein HU 1 [Bacillus sp. BT1B_CT2]
          Length = 92

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 56/91 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   LS+KD+T+ V ++F+ I D+   GE I++  F  F V+++ +R G
Sbjct: 1  MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGEKIQLIGFGNFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E++I   +V  FK    LK  +  
Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALKDAVAG 91


>gi|295398952|ref|ZP_06808934.1| histone family protein DNA-binding protein [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|312110441|ref|YP_003988757.1| histone family protein DNA-binding protein [Geobacillus sp.
          Y4.1MC1]
 gi|294978418|gb|EFG54014.1| histone family protein DNA-binding protein [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|311215542|gb|ADP74146.1| histone family protein DNA-binding protein [Geobacillus sp.
          Y4.1MC1]
 gi|227370|prf||1702428A DNA binding protein HU
          Length = 90

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 56/90 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++  GLS+KD+T+ V  +F  I ++  +G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTELINTVAEISGLSKKDATKAVDAVFESITEALKKGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FK    LK  + 
Sbjct: 61 RNPQTGEEMEIPASKVPAFKPGKALKDAVK 90


>gi|15613872|ref|NP_242175.1| non-specific DNA-binding protein II (HB) (HU) [Bacillus
          halodurans C-125]
 gi|14194649|sp|Q9KDA5|DBH1_BACHD RecName: Full=DNA-binding protein HU-1
 gi|10173925|dbj|BAB05028.1| non-specific DNA-binding protein II (HB) (HU) [Bacillus
          halodurans C-125]
          Length = 90

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++  LS+KD+++ V  +F  I  +   G  +++  F +F V+++ +R G
Sbjct: 1  MNKTDLINAVAEQAELSKKDASKAVDAVFESITGALKEGGKVQLVGFGSFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +   FK    LK  + 
Sbjct: 61 RNPQTGEEIEIPATKNPAFKPGKQLKDAVN 90


>gi|311030279|ref|ZP_07708369.1| DNA-binding protein HU [Bacillus sp. m3-13]
          Length = 90

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 55/90 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ ++++   LS+KD+T+ V  +F+ I D+   G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAEASELSKKDATKAVDAVFDTILDALKNGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FK    LK  + 
Sbjct: 61 RNPQTGEEIEIAASKVPAFKPGKALKDAVK 90


>gi|149183707|ref|ZP_01862118.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus sp. SG-1]
 gi|148848589|gb|EDL62828.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus sp. SG-1]
          Length = 90

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   LS+KD+T+ V  +F  I D+   G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTELINAVAEAAELSKKDATKAVDAVFESIQDALANGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FK    LK  + 
Sbjct: 61 RNPQTGEEIEISASKVPAFKPGKALKDAVK 90


>gi|228900190|ref|ZP_04064422.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222]
 gi|228907242|ref|ZP_04071102.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
 gi|228914185|ref|ZP_04077801.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis
          BGSC 4CC1]
 gi|228926640|ref|ZP_04089709.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228945209|ref|ZP_04107565.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228964584|ref|ZP_04125693.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str.
          T04001]
 gi|228971603|ref|ZP_04132226.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228990624|ref|ZP_04150589.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442]
 gi|228996722|ref|ZP_04156359.1| DNA-binding protein HU [Bacillus mycoides Rock3-17]
 gi|229004383|ref|ZP_04162146.1| DNA-binding protein HU [Bacillus mycoides Rock1-4]
 gi|229010917|ref|ZP_04168113.1| DNA-binding protein HU [Bacillus mycoides DSM 2048]
 gi|229016866|ref|ZP_04173794.1| DNA-binding protein HU [Bacillus cereus AH1273]
 gi|229023072|ref|ZP_04179586.1| DNA-binding protein HU [Bacillus cereus AH1272]
 gi|229058245|ref|ZP_04196633.1| DNA-binding protein HU [Bacillus cereus AH603]
 gi|229069162|ref|ZP_04202453.1| DNA-binding protein HU [Bacillus cereus F65185]
 gi|229084613|ref|ZP_04216882.1| DNA-binding protein HU [Bacillus cereus Rock3-44]
 gi|229090571|ref|ZP_04221806.1| DNA-binding protein HU [Bacillus cereus Rock3-42]
 gi|229121152|ref|ZP_04250389.1| DNA-binding protein HU [Bacillus cereus 95/8201]
 gi|229126923|ref|ZP_04255934.1| DNA-binding protein HU [Bacillus cereus BDRD-Cer4]
 gi|229132417|ref|ZP_04261271.1| DNA-binding protein HU [Bacillus cereus BDRD-ST196]
 gi|229138303|ref|ZP_04266898.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26]
 gi|229155175|ref|ZP_04283287.1| DNA-binding protein HU [Bacillus cereus ATCC 4342]
 gi|229160560|ref|ZP_04288555.1| DNA-binding protein HU [Bacillus cereus R309803]
 gi|229172247|ref|ZP_04299811.1| DNA-binding protein HU [Bacillus cereus MM3]
 gi|229189691|ref|ZP_04316705.1| DNA-binding protein HU [Bacillus cereus ATCC 10876]
 gi|229195810|ref|ZP_04322570.1| DNA-binding protein HU [Bacillus cereus m1293]
 gi|228587707|gb|EEK45765.1| DNA-binding protein HU [Bacillus cereus m1293]
 gi|228593740|gb|EEK51545.1| DNA-binding protein HU [Bacillus cereus ATCC 10876]
 gi|228611235|gb|EEK68493.1| DNA-binding protein HU [Bacillus cereus MM3]
 gi|228622970|gb|EEK79801.1| DNA-binding protein HU [Bacillus cereus R309803]
 gi|228628302|gb|EEK85017.1| DNA-binding protein HU [Bacillus cereus ATCC 4342]
 gi|228645195|gb|EEL01432.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26]
 gi|228651123|gb|EEL07104.1| DNA-binding protein HU [Bacillus cereus BDRD-ST196]
 gi|228656523|gb|EEL12350.1| DNA-binding protein HU [Bacillus cereus BDRD-Cer4]
 gi|228662271|gb|EEL17874.1| DNA-binding protein HU [Bacillus cereus 95/8201]
 gi|228692774|gb|EEL46498.1| DNA-binding protein HU [Bacillus cereus Rock3-42]
 gi|228698689|gb|EEL51405.1| DNA-binding protein HU [Bacillus cereus Rock3-44]
 gi|228713914|gb|EEL65798.1| DNA-binding protein HU [Bacillus cereus F65185]
 gi|228720109|gb|EEL71693.1| DNA-binding protein HU [Bacillus cereus AH603]
 gi|228738218|gb|EEL88700.1| DNA-binding protein HU [Bacillus cereus AH1272]
 gi|228744427|gb|EEL94501.1| DNA-binding protein HU [Bacillus cereus AH1273]
 gi|228750317|gb|EEM00147.1| DNA-binding protein HU [Bacillus mycoides DSM 2048]
 gi|228756868|gb|EEM06150.1| DNA-binding protein HU [Bacillus mycoides Rock1-4]
 gi|228763041|gb|EEM11951.1| DNA-binding protein HU [Bacillus mycoides Rock3-17]
 gi|228769150|gb|EEM17748.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442]
 gi|228788126|gb|EEM36082.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228795118|gb|EEM42615.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str.
          T04001]
 gi|228814444|gb|EEM60709.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228833016|gb|EEM78584.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228845389|gb|EEM90424.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis
          BGSC 4CC1]
 gi|228852382|gb|EEM97176.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
 gi|228859460|gb|EEN03888.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222]
          Length = 93

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 56/90 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ ++++   LS+KD+T+ V  +F+ I ++  +G+ +++  F  F V+++ +R G
Sbjct: 4  MNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FK    LK  + 
Sbjct: 64 RNPQTGEEIEIAASKVPAFKPGKALKDAVK 93


>gi|227890888|ref|ZP_04008693.1| non-specific DNA-binding protein HBsu [Lactobacillus salivarius
           ATCC 11741]
 gi|227867297|gb|EEJ74718.1| non-specific DNA-binding protein HBsu [Lactobacillus salivarius
           ATCC 11741]
          Length = 100

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 54/89 (60%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
            ++ L++ ++++ GL++KD+T  V  +F  I D+ V GE +++  F  F V+++ +R GR
Sbjct: 12  NKAALIERVAEKTGLTKKDATVAVDAVFETIQDALVDGEKVQLIGFGNFEVRERAARKGR 71

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N QT +E++I   +V  FK    LK  + 
Sbjct: 72  NPQTGEEIEIPASKVPAFKPGKSLKDAVK 100


>gi|23099247|ref|NP_692713.1| non-specific DNA-binding protein [Oceanobacillus iheyensis
          HTE831]
 gi|22777476|dbj|BAC13748.1| non-specific DNA-binding protein [Oceanobacillus iheyensis
          HTE831]
          Length = 90

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 55/90 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV +++++  LS+KD+T+ V  +F  + DS   GE +++  F  F V+++ +R G
Sbjct: 1  MNKTDLVNAVAEKSELSKKDATKAVDAVFESVMDSLKNGEKVQLIGFGNFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FK    LK  + 
Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALKDSVK 90


>gi|261406040|ref|YP_003242281.1| histone family protein DNA-binding protein [Paenibacillus sp.
          Y412MC10]
 gi|315646418|ref|ZP_07899536.1| histone family protein DNA-binding protein [Paenibacillus vortex
          V453]
 gi|329929885|ref|ZP_08283561.1| DNA-binding protein HU-beta [Paenibacillus sp. HGF5]
 gi|261282503|gb|ACX64474.1| histone family protein DNA-binding protein [Paenibacillus sp.
          Y412MC10]
 gi|315278061|gb|EFU41381.1| histone family protein DNA-binding protein [Paenibacillus vortex
          V453]
 gi|328935863|gb|EGG32324.1| DNA-binding protein HU-beta [Paenibacillus sp. HGF5]
          Length = 90

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+  +++   LS+KD+T+ V  +F+ I ++   G+ +++  F  F V+++ +R G
Sbjct: 1  MNKSDLITQVAESTELSKKDATKAVDAVFDAISEALQSGDKVQLVGFGNFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   ++  FK    LK  I 
Sbjct: 61 RNPQTGEEIEIPASKIPAFKPGKALKDGIK 90


>gi|253576405|ref|ZP_04853735.1| histone family protein DNA-binding protein [Paenibacillus sp.
          oral taxon 786 str. D14]
 gi|251844298|gb|EES72316.1| histone family protein DNA-binding protein [Paenibacillus sp.
          oral taxon 786 str. D14]
          Length = 90

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+  +++   LS+KD+T+ V  +F+ I  +   G+ +++  F  F V+++ +R G
Sbjct: 1  MNKSDLIAQVAESTELSKKDATKAVDAVFDAISTALQNGDKVQLVGFGNFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   ++  FK    LK  I 
Sbjct: 61 RNPQTGEEIEIPASKIPAFKPGKALKDGIK 90


>gi|229543995|ref|ZP_04433054.1| histone family protein DNA-binding protein [Bacillus coagulans
          36D1]
 gi|229325134|gb|EEN90810.1| histone family protein DNA-binding protein [Bacillus coagulans
          36D1]
          Length = 90

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ ++++   LS+KD+T+ V  +F+ I ++   G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAEATELSKKDTTKAVDAIFDTIQNALANGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  FK    LK  + 
Sbjct: 61 RNPQTGEEIDIAASKVPAFKPGKALKDAVK 90


>gi|157692778|ref|YP_001487240.1| non-specific DNA-binding protein HBsu [Bacillus pumilus SAFR-032]
 gi|194016903|ref|ZP_03055516.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Bacillus
          pumilus ATCC 7061]
 gi|157681536|gb|ABV62680.1| non-specific DNA-binding protein HBsu [Bacillus pumilus SAFR-032]
 gi|194011509|gb|EDW21078.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Bacillus
          pumilus ATCC 7061]
          Length = 92

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 55/91 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   LS+KD+T+ V ++F+ I D+   G+ I++  F  F V+++ +R G
Sbjct: 1  MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT  E++I   +V  FK    LK  +  
Sbjct: 61 RNPQTGAEIEIPASKVPAFKPGKALKDAVAG 91


>gi|160900157|ref|YP_001565739.1| integration host factor subunit beta [Delftia acidovorans SPH-1]
 gi|160365741|gb|ABX37354.1| integration host factor, beta subunit [Delftia acidovorans SPH-1]
          Length = 113

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 2/110 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +TRSDLV+ ++  FG LS++D+ + V T+ + + D+ VRG  I+I  F +F V  +  R+
Sbjct: 1   MTRSDLVEELAARFGQLSQRDAEQAVKTILDAVSDALVRGHRIEIRGFGSFSVNHRPPRM 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           GRN ++ + V I  +RV  FK    L++ + D   G   + D+  S +GS
Sbjct: 61  GRNPRSGEAVHIPSKRVPHFKPGKALREAV-DLRPGVAIDTDNTGSGTGS 109


>gi|70726439|ref|YP_253353.1| DNA-binding protein II [Staphylococcus haemolyticus JCSC1435]
 gi|68447163|dbj|BAE04747.1| DNA-binding protein II [Staphylococcus haemolyticus JCSC1435]
          Length = 90

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++  L++K++   V  +F  I  S  +GE +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQQSLSKGEKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGKEIEIPASKVPAFKAGKALKDAVK 90


>gi|30261605|ref|NP_843982.1| DNA-binding protein HU [Bacillus anthracis str. Ames]
 gi|42780711|ref|NP_977958.1| DNA-binding protein HU [Bacillus cereus ATCC 10987]
 gi|47526805|ref|YP_018154.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184437|ref|YP_027689.1| DNA-binding protein HU [Bacillus anthracis str. Sterne]
 gi|49481024|ref|YP_035726.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian
          str. 97-27]
 gi|52143837|ref|YP_082990.1| DNA-binding protein HU [Bacillus cereus E33L]
 gi|152975033|ref|YP_001374550.1| histone family protein DNA-binding protein [Bacillus cereus
          subsp. cytotoxis NVH 391-98]
 gi|163939425|ref|YP_001644309.1| histone family protein DNA-binding protein [Bacillus
          weihenstephanensis KBAB4]
 gi|165869502|ref|ZP_02214161.1| DNA-binding protein HU [Bacillus anthracis str. A0488]
 gi|167633255|ref|ZP_02391580.1| DNA-binding protein HU [Bacillus anthracis str. A0442]
 gi|167639174|ref|ZP_02397447.1| DNA-binding protein HU [Bacillus anthracis str. A0193]
 gi|170686317|ref|ZP_02877539.1| DNA-binding protein HU [Bacillus anthracis str. A0465]
 gi|170706435|ref|ZP_02896895.1| DNA-binding protein HU [Bacillus anthracis str. A0389]
 gi|177650638|ref|ZP_02933605.1| DNA-binding protein HU [Bacillus anthracis str. A0174]
 gi|190568652|ref|ZP_03021557.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I]
 gi|196033321|ref|ZP_03100733.1| DNA-binding protein HU [Bacillus cereus W]
 gi|196039102|ref|ZP_03106409.1| DNA-binding protein HU [Bacillus cereus NVH0597-99]
 gi|196046571|ref|ZP_03113795.1| DNA-binding protein HU [Bacillus cereus 03BB108]
 gi|206970635|ref|ZP_03231587.1| DNA-binding protein HU [Bacillus cereus AH1134]
 gi|206975002|ref|ZP_03235917.1| DNA-binding protein HU [Bacillus cereus H3081.97]
 gi|217959087|ref|YP_002337635.1| DNA-binding protein HU [Bacillus cereus AH187]
 gi|218233805|ref|YP_002366291.1| DNA-binding protein HU [Bacillus cereus B4264]
 gi|218896539|ref|YP_002444950.1| DNA-binding protein HU [Bacillus cereus G9842]
 gi|218902721|ref|YP_002450555.1| DNA-binding protein HU [Bacillus cereus AH820]
 gi|222095239|ref|YP_002529299.1| DNA-binding protein hu [Bacillus cereus Q1]
 gi|225863473|ref|YP_002748851.1| DNA-binding protein HU [Bacillus cereus 03BB102]
 gi|227815643|ref|YP_002815652.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684]
 gi|228920320|ref|ZP_04083667.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228932897|ref|ZP_04095763.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|229029289|ref|ZP_04185379.1| DNA-binding protein HU [Bacillus cereus AH1271]
 gi|229166456|ref|ZP_04294212.1| DNA-binding protein HU [Bacillus cereus AH621]
 gi|229601774|ref|YP_002866013.1| DNA-binding protein HU [Bacillus anthracis str. A0248]
 gi|254683097|ref|ZP_05146958.1| DNA-binding protein HU [Bacillus anthracis str. CNEVA-9066]
 gi|254723685|ref|ZP_05185471.1| DNA-binding protein HU [Bacillus anthracis str. A1055]
 gi|254734446|ref|ZP_05192158.1| DNA-binding protein HU [Bacillus anthracis str. Western North
          America USA6153]
 gi|254740857|ref|ZP_05198545.1| DNA-binding protein HU [Bacillus anthracis str. Kruger B]
 gi|254755095|ref|ZP_05207129.1| DNA-binding protein HU [Bacillus anthracis str. Vollum]
 gi|254759632|ref|ZP_05211656.1| DNA-binding protein HU [Bacillus anthracis str. Australia 94]
 gi|296502179|ref|YP_003663879.1| DNA-binding protein HU [Bacillus thuringiensis BMB171]
 gi|300117462|ref|ZP_07055252.1| DNA-binding protein HU [Bacillus cereus SJ1]
 gi|301053147|ref|YP_003791358.1| DNA-binding protein HU [Bacillus anthracis CI]
 gi|30255459|gb|AAP25468.1| DNA-binding protein HU [Bacillus anthracis str. Ames]
 gi|42736631|gb|AAS40566.1| DNA-binding protein HU [Bacillus cereus ATCC 10987]
 gi|47501953|gb|AAT30629.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178364|gb|AAT53740.1| DNA-binding protein HU [Bacillus anthracis str. Sterne]
 gi|49332580|gb|AAT63226.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian
          str. 97-27]
 gi|51977306|gb|AAU18856.1| DNA-binding protein HU [Bacillus cereus E33L]
 gi|152023785|gb|ABS21555.1| histone family protein DNA-binding protein [Bacillus cytotoxicus
          NVH 391-98]
 gi|163861622|gb|ABY42681.1| histone family protein DNA-binding protein [Bacillus
          weihenstephanensis KBAB4]
 gi|164714942|gb|EDR20460.1| DNA-binding protein HU [Bacillus anthracis str. A0488]
 gi|167512964|gb|EDR88337.1| DNA-binding protein HU [Bacillus anthracis str. A0193]
 gi|167531293|gb|EDR93971.1| DNA-binding protein HU [Bacillus anthracis str. A0442]
 gi|170128533|gb|EDS97400.1| DNA-binding protein HU [Bacillus anthracis str. A0389]
 gi|170670014|gb|EDT20755.1| DNA-binding protein HU [Bacillus anthracis str. A0465]
 gi|172083782|gb|EDT68842.1| DNA-binding protein HU [Bacillus anthracis str. A0174]
 gi|190560252|gb|EDV14232.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I]
 gi|195993755|gb|EDX57711.1| DNA-binding protein HU [Bacillus cereus W]
 gi|196022504|gb|EDX61187.1| DNA-binding protein HU [Bacillus cereus 03BB108]
 gi|196030247|gb|EDX68847.1| DNA-binding protein HU [Bacillus cereus NVH0597-99]
 gi|206734271|gb|EDZ51441.1| DNA-binding protein HU [Bacillus cereus AH1134]
 gi|206747021|gb|EDZ58413.1| DNA-binding protein HU [Bacillus cereus H3081.97]
 gi|217064829|gb|ACJ79079.1| DNA-binding protein HU [Bacillus cereus AH187]
 gi|218161762|gb|ACK61754.1| DNA-binding protein HU [Bacillus cereus B4264]
 gi|218539449|gb|ACK91847.1| DNA-binding protein HU [Bacillus cereus AH820]
 gi|218542908|gb|ACK95302.1| DNA-binding protein HU [Bacillus cereus G9842]
 gi|221239297|gb|ACM12007.1| DNA-binding protein HU [Bacillus cereus Q1]
 gi|225788998|gb|ACO29215.1| DNA-binding protein HU [Bacillus cereus 03BB102]
 gi|227005725|gb|ACP15468.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684]
 gi|228617030|gb|EEK74099.1| DNA-binding protein HU [Bacillus cereus AH621]
 gi|228732037|gb|EEL82929.1| DNA-binding protein HU [Bacillus cereus AH1271]
 gi|228826763|gb|EEM72531.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228839343|gb|EEM84637.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|229266182|gb|ACQ47819.1| DNA-binding protein HU [Bacillus anthracis str. A0248]
 gi|296323231|gb|ADH06159.1| DNA-binding protein HU [Bacillus thuringiensis BMB171]
 gi|298725297|gb|EFI65949.1| DNA-binding protein HU [Bacillus cereus SJ1]
 gi|300375316|gb|ADK04220.1| DNA-binding protein HU [Bacillus cereus biovar anthracis str. CI]
 gi|324325626|gb|ADY20886.1| DNA-binding protein HU [Bacillus thuringiensis serovar finitimus
          YBT-020]
 gi|326939227|gb|AEA15123.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 90

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 56/90 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ ++++   LS+KD+T+ V  +F+ I ++  +G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FK    LK  + 
Sbjct: 61 RNPQTGEEIEIAASKVPAFKPGKALKDAVK 90


>gi|205373831|ref|ZP_03226633.1| hypothetical protein Bcoam_11505 [Bacillus coahuilensis m4-4]
          Length = 90

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   LS+KD+T+ V  +F  I ++   G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTELINAVAEATELSKKDATKAVDAVFESIQNALANGDKVQLIGFGNFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FK    LK  + 
Sbjct: 61 RNPQTGEEIEIAASKVPAFKPGKALKDAVK 90


>gi|15924463|ref|NP_371997.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927054|ref|NP_374587.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus N315]
 gi|21283091|ref|NP_646179.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus MW2]
 gi|27468078|ref|NP_764715.1| DNA-binding protein II [Staphylococcus epidermidis ATCC 12228]
 gi|49483660|ref|YP_040884.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          MRSA252]
 gi|49486312|ref|YP_043533.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          MSSA476]
 gi|57650428|ref|YP_186357.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus COL]
 gi|57866986|ref|YP_188618.1| DNA-binding protein HU [Staphylococcus epidermidis RP62A]
 gi|82751070|ref|YP_416811.1| DNA-binding protein II [Staphylococcus aureus RF122]
 gi|87160505|ref|YP_494059.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          USA300_FPR3757]
 gi|88195207|ref|YP_500008.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus NCTC
          8325]
 gi|148267957|ref|YP_001246900.1| histone family protein DNA-binding protein [Staphylococcus aureus
          subsp. aureus JH9]
 gi|150394021|ref|YP_001316696.1| histone family protein DNA-binding protein [Staphylococcus aureus
          subsp. aureus JH1]
 gi|151221594|ref|YP_001332416.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus str.
          Newman]
 gi|156979792|ref|YP_001442051.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509640|ref|YP_001575299.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          USA300_TCH1516]
 gi|221140960|ref|ZP_03565453.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus str.
          JKD6009]
 gi|239636854|ref|ZP_04677853.1| DNA-binding protein HU 1 [Staphylococcus warneri L37603]
 gi|242242752|ref|ZP_04797197.1| DNA-binding protein II [Staphylococcus epidermidis W23144]
 gi|242373780|ref|ZP_04819354.1| DNA-binding protein II [Staphylococcus epidermidis M23864:W1]
 gi|251810895|ref|ZP_04825368.1| DNA-binding protein II [Staphylococcus epidermidis BCM-HMP0060]
 gi|253315980|ref|ZP_04839193.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus str.
          CF-Marseille]
 gi|253732115|ref|ZP_04866280.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253733280|ref|ZP_04867445.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus
          TCH130]
 gi|255006259|ref|ZP_05144860.2| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          Mu50-omega]
 gi|257425537|ref|ZP_05601962.1| histone family protein DNA-binding protein [Staphylococcus aureus
          subsp. aureus 55/2053]
 gi|257428196|ref|ZP_05604594.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus
          65-1322]
 gi|257430826|ref|ZP_05607208.1| histone family protein DNA-binding protein [Staphylococcus aureus
          subsp. aureus 68-397]
 gi|257433585|ref|ZP_05609943.1| histone family protein DNA-binding protein [Staphylococcus aureus
          subsp. aureus E1410]
 gi|257436426|ref|ZP_05612473.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus M876]
 gi|257795472|ref|ZP_05644451.1| DNA-binding protein HU [Staphylococcus aureus A9781]
 gi|258413280|ref|ZP_05681556.1| DNA-binding protein HU [Staphylococcus aureus A9763]
 gi|258420613|ref|ZP_05683555.1| DNA-binding protein II [Staphylococcus aureus A9719]
 gi|258422496|ref|ZP_05685404.1| DNA-binding protein II [Staphylococcus aureus A9635]
 gi|258426808|ref|ZP_05688028.1| DNA-binding protein HU [Staphylococcus aureus A9299]
 gi|258444806|ref|ZP_05693135.1| DNA-binding protein II [Staphylococcus aureus A8115]
 gi|258447360|ref|ZP_05695504.1| DNA-binding protein HU [Staphylococcus aureus A6300]
 gi|258449755|ref|ZP_05697856.1| DNA-binding protein II [Staphylococcus aureus A6224]
 gi|258451131|ref|ZP_05699166.1| DNA-binding protein HU [Staphylococcus aureus A5948]
 gi|258454575|ref|ZP_05702539.1| histone family protein DNA-binding protein [Staphylococcus aureus
          A5937]
 gi|262048995|ref|ZP_06021874.1| DNA-binding protein II [Staphylococcus aureus D30]
 gi|262051642|ref|ZP_06023862.1| DNA-binding protein II [Staphylococcus aureus 930918-3]
 gi|269203098|ref|YP_003282367.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ED98]
 gi|282876095|ref|ZP_06284962.1| DNA-binding protein HU [Staphylococcus epidermidis SK135]
 gi|282892970|ref|ZP_06301205.1| DNA-binding protein HU-beta [Staphylococcus aureus A8117]
 gi|282904055|ref|ZP_06311943.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus C160]
 gi|282905819|ref|ZP_06313674.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
          Btn1260]
 gi|282908789|ref|ZP_06316607.1| integration host factor, beta subunit [Staphylococcus aureus
          subsp. aureus WW2703/97]
 gi|282911050|ref|ZP_06318852.1| integration host factor, beta subunit [Staphylococcus aureus
          subsp. aureus WBG10049]
 gi|282914263|ref|ZP_06322050.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus M899]
 gi|282916740|ref|ZP_06324498.1| DNA-binding protein HBsu [Staphylococcus aureus subsp. aureus
          D139]
 gi|282919186|ref|ZP_06326921.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
          C427]
 gi|282921720|ref|ZP_06329437.1| DNA-binding protein HU [Staphylococcus aureus A9765]
 gi|282924370|ref|ZP_06332044.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus C101]
 gi|282928001|ref|ZP_06335610.1| DNA-binding protein HU-beta [Staphylococcus aureus A10102]
 gi|283770545|ref|ZP_06343437.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
          H19]
 gi|283958237|ref|ZP_06375688.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|284024471|ref|ZP_06378869.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus 132]
 gi|293366560|ref|ZP_06613237.1| DNA-binding protein HU [Staphylococcus epidermidis
          M23864:W2(grey)]
 gi|293501288|ref|ZP_06667139.1| DNA-binding protein HBsu [Staphylococcus aureus subsp. aureus
          58-424]
 gi|293510250|ref|ZP_06668958.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus M809]
 gi|293526845|ref|ZP_06671529.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          M1015]
 gi|294848436|ref|ZP_06789182.1| DNA-binding protein HU [Staphylococcus aureus A9754]
 gi|295407222|ref|ZP_06817022.1| DNA-binding protein HU-beta [Staphylococcus aureus A8819]
 gi|295427981|ref|ZP_06820613.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          EMRSA16]
 gi|296275330|ref|ZP_06857837.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MR1]
 gi|297207868|ref|ZP_06924301.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ATCC
          51811]
 gi|297244646|ref|ZP_06928529.1| DNA-binding protein HU-beta [Staphylococcus aureus A8796]
 gi|297591049|ref|ZP_06949687.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MN8]
 gi|300911953|ref|ZP_07129396.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          TCH70]
 gi|304380944|ref|ZP_07363603.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ATCC
          BAA-39]
 gi|81694468|sp|Q5HFV0|DBH_STAAC RecName: Full=DNA-binding protein HU
 gi|81696318|sp|Q6G990|DBH_STAAS RecName: Full=DNA-binding protein HU
 gi|81696482|sp|Q6GGT8|DBH_STAAR RecName: Full=DNA-binding protein HU
 gi|81704412|sp|Q7A0U9|DBH_STAAW RecName: Full=DNA-binding protein HU
 gi|81705666|sp|Q7A5J1|DBH_STAAN RecName: Full=DNA-binding protein HU
 gi|81781570|sp|Q99U17|DBH_STAAM RecName: Full=DNA-binding protein HU
 gi|27315623|gb|AAO04757.1|AE016747_254 DNA-binding protein II [Staphylococcus epidermidis ATCC 12228]
 gi|13701272|dbj|BAB42566.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus N315]
 gi|14247244|dbj|BAB57635.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus Mu50]
 gi|21204531|dbj|BAB95227.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus MW2]
 gi|49241789|emb|CAG40480.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          MRSA252]
 gi|49244755|emb|CAG43191.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          MSSA476]
 gi|57284614|gb|AAW36708.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus COL]
 gi|57637644|gb|AAW54432.1| DNA-binding protein HU [Staphylococcus epidermidis RP62A]
 gi|82656601|emb|CAI81024.1| DNA-binding protein II [Staphylococcus aureus RF122]
 gi|87126479|gb|ABD20993.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          USA300_FPR3757]
 gi|87202765|gb|ABD30575.1| DNA-binding protein HU, putative [Staphylococcus aureus subsp.
          aureus NCTC 8325]
 gi|147741026|gb|ABQ49324.1| bacterial nucleoid protein Hbs [Staphylococcus aureus subsp.
          aureus JH9]
 gi|149946473|gb|ABR52409.1| histone family protein DNA-binding protein [Staphylococcus aureus
          subsp. aureus JH1]
 gi|150374394|dbj|BAF67654.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus str.
          Newman]
 gi|156721927|dbj|BAF78344.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368449|gb|ABX29420.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          USA300_TCH1516]
 gi|239597528|gb|EEQ80026.1| DNA-binding protein HU 1 [Staphylococcus warneri L37603]
 gi|242233888|gb|EES36200.1| DNA-binding protein II [Staphylococcus epidermidis W23144]
 gi|242348517|gb|EES40119.1| DNA-binding protein II [Staphylococcus epidermidis M23864:W1]
 gi|251805575|gb|EES58232.1| DNA-binding protein II [Staphylococcus epidermidis BCM-HMP0060]
 gi|253724162|gb|EES92891.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253728820|gb|EES97549.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus
          TCH130]
 gi|257271994|gb|EEV04132.1| histone family protein DNA-binding protein [Staphylococcus aureus
          subsp. aureus 55/2053]
 gi|257275037|gb|EEV06524.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus
          65-1322]
 gi|257278954|gb|EEV09573.1| histone family protein DNA-binding protein [Staphylococcus aureus
          subsp. aureus 68-397]
 gi|257281678|gb|EEV11815.1| histone family protein DNA-binding protein [Staphylococcus aureus
          subsp. aureus E1410]
 gi|257284708|gb|EEV14828.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus M876]
 gi|257789444|gb|EEV27784.1| DNA-binding protein HU [Staphylococcus aureus A9781]
 gi|257839844|gb|EEV64312.1| DNA-binding protein HU [Staphylococcus aureus A9763]
 gi|257843561|gb|EEV67968.1| DNA-binding protein II [Staphylococcus aureus A9719]
 gi|257847253|gb|EEV71259.1| DNA-binding protein II [Staphylococcus aureus A9635]
 gi|257849969|gb|EEV73927.1| DNA-binding protein HU [Staphylococcus aureus A9299]
 gi|257850299|gb|EEV74252.1| DNA-binding protein II [Staphylococcus aureus A8115]
 gi|257853551|gb|EEV76510.1| DNA-binding protein HU [Staphylococcus aureus A6300]
 gi|257857003|gb|EEV79903.1| DNA-binding protein II [Staphylococcus aureus A6224]
 gi|257861186|gb|EEV83999.1| DNA-binding protein HU [Staphylococcus aureus A5948]
 gi|257862958|gb|EEV85722.1| histone family protein DNA-binding protein [Staphylococcus aureus
          A5937]
 gi|259160483|gb|EEW45507.1| DNA-binding protein II [Staphylococcus aureus 930918-3]
 gi|259162927|gb|EEW47490.1| DNA-binding protein II [Staphylococcus aureus D30]
 gi|262075388|gb|ACY11361.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ED98]
 gi|269940964|emb|CBI49348.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus TW20]
 gi|281295120|gb|EFA87647.1| DNA-binding protein HU [Staphylococcus epidermidis SK135]
 gi|282313757|gb|EFB44150.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus C101]
 gi|282316996|gb|EFB47370.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
          C427]
 gi|282319227|gb|EFB49579.1| DNA-binding protein HBsu [Staphylococcus aureus subsp. aureus
          D139]
 gi|282322331|gb|EFB52655.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus M899]
 gi|282324745|gb|EFB55055.1| integration host factor, beta subunit [Staphylococcus aureus
          subsp. aureus WBG10049]
 gi|282327053|gb|EFB57348.1| integration host factor, beta subunit [Staphylococcus aureus
          subsp. aureus WW2703/97]
 gi|282331111|gb|EFB60625.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
          Btn1260]
 gi|282590298|gb|EFB95378.1| DNA-binding protein HU-beta [Staphylococcus aureus A10102]
 gi|282593982|gb|EFB98971.1| DNA-binding protein HU [Staphylococcus aureus A9765]
 gi|282595673|gb|EFC00637.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus C160]
 gi|282764967|gb|EFC05092.1| DNA-binding protein HU-beta [Staphylococcus aureus A8117]
 gi|283460692|gb|EFC07782.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
          H19]
 gi|283470684|emb|CAQ49895.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Staphylococcus aureus subsp. aureus ST398]
 gi|283790386|gb|EFC29203.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|285817153|gb|ADC37640.1| DNA-binding protein II HBsu [Staphylococcus aureus 04-02981]
 gi|290920403|gb|EFD97467.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          M1015]
 gi|291096293|gb|EFE26554.1| DNA-binding protein HBsu [Staphylococcus aureus subsp. aureus
          58-424]
 gi|291319329|gb|EFE59698.1| DNA-binding protein HU [Staphylococcus epidermidis
          M23864:W2(grey)]
 gi|291467194|gb|EFF09712.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus M809]
 gi|294824462|gb|EFG40885.1| DNA-binding protein HU [Staphylococcus aureus A9754]
 gi|294967935|gb|EFG43964.1| DNA-binding protein HU-beta [Staphylococcus aureus A8819]
 gi|295128339|gb|EFG57973.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          EMRSA16]
 gi|296887442|gb|EFH26342.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ATCC
          51811]
 gi|297178676|gb|EFH37922.1| DNA-binding protein HU-beta [Staphylococcus aureus A8796]
 gi|297575935|gb|EFH94651.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MN8]
 gi|298694762|gb|ADI97984.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus
          ED133]
 gi|300886199|gb|EFK81401.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          TCH70]
 gi|302333083|gb|ADL23276.1| histone family protein DNA-binding protein HU [Staphylococcus
          aureus subsp. aureus JKD6159]
 gi|302751303|gb|ADL65480.1| histone family protein DNA-binding protein HU [Staphylococcus
          aureus subsp. aureus str. JKD6008]
 gi|304340530|gb|EFM06465.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ATCC
          BAA-39]
 gi|312438124|gb|ADQ77195.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          TCH60]
 gi|312829863|emb|CBX34705.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129189|gb|EFT85184.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          CGS03]
 gi|315195370|gb|EFU25757.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          CGS00]
 gi|315197780|gb|EFU28114.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          CGS01]
 gi|319400822|gb|EFV89041.1| DNA-binding protein HU 1 [Staphylococcus epidermidis FRI909]
 gi|320140355|gb|EFW32211.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          MRSA131]
 gi|320142718|gb|EFW34521.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          MRSA177]
 gi|323439525|gb|EGA97246.1| DNA-binding protein II [Staphylococcus aureus O11]
 gi|323442236|gb|EGA99867.1| DNA-binding protein II [Staphylococcus aureus O46]
 gi|329314149|gb|AEB88562.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
          T0131]
 gi|329723176|gb|EGG59707.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
          21189]
 gi|329725443|gb|EGG61926.1| DNA-binding protein HU-beta [Staphylococcus epidermidis VCU144]
 gi|329727498|gb|EGG63954.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
          21172]
 gi|329731360|gb|EGG67726.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
          21193]
 gi|329735377|gb|EGG71669.1| DNA-binding protein HU-beta [Staphylococcus epidermidis VCU045]
 gi|329737246|gb|EGG73500.1| DNA-binding protein HU-beta [Staphylococcus epidermidis VCU028]
 gi|330686039|gb|EGG97662.1| DNA-binding protein HU-beta [Staphylococcus epidermidis VCU121]
          Length = 90

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++  L++K++   V  +F  I +S  +GE +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQNSLAKGEKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALKDAVK 90


>gi|228476046|ref|ZP_04060754.1| DNA-binding protein HU 1 [Staphylococcus hominis SK119]
 gi|314936394|ref|ZP_07843741.1| DNA-binding protein HU [Staphylococcus hominis subsp. hominis
          C80]
 gi|228269869|gb|EEK11349.1| DNA-binding protein HU 1 [Staphylococcus hominis SK119]
 gi|313655013|gb|EFS18758.1| DNA-binding protein HU [Staphylococcus hominis subsp. hominis
          C80]
          Length = 90

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 55/90 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++  L++K++   V  +F  I +S  +GE +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQNSLSKGEKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGKEIEIPASKVPAFKAGKALKDAVK 90


>gi|319651353|ref|ZP_08005482.1| DNA-binding protein HU 1 [Bacillus sp. 2_A_57_CT2]
 gi|317396884|gb|EFV77593.1| DNA-binding protein HU 1 [Bacillus sp. 2_A_57_CT2]
          Length = 90

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 55/90 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   LS+KD+T+ V  +F+ I D+   G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTELINAVAEAGELSKKDATKAVDAVFDTILDALKNGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FK    LK  + 
Sbjct: 61 RNPQTGEEIEIAASKVPAFKPGKALKDAVK 90


>gi|73662582|ref|YP_301363.1| nucleoid DNA-binding protein HU [Staphylococcus saprophyticus
          subsp. saprophyticus ATCC 15305]
 gi|72495097|dbj|BAE18418.1| bacterial nucleoid DNA-binding protein HU [Staphylococcus
          saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 90

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++  L++K++   V  +F  I  S  +GE +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAEQADLTKKEAGLAVDAVFESIQSSLSKGEKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALKDAVK 90


>gi|332977211|gb|EGK14007.1| DNA-binding protein HU [Desmospora sp. 8437]
          Length = 94

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 54/92 (58%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +++L+  ++++  +++KD+T+ V  + + I ++   GE +++  F  F V+++ +R
Sbjct: 2  RVVNKTELISQVAEKTNMTKKDATQAVDAVLDTITEALKAGEKVQLIGFGNFEVRERAAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E+ I   +V  FK    LK  + 
Sbjct: 62 KGRNPQTGKEIDIPASKVPAFKPGKALKDDVN 93


>gi|126653367|ref|ZP_01725471.1| DNA-binding protein HU (DNA-binding protein II) [Bacillus sp.
          B14905]
 gi|299538558|ref|ZP_07051841.1| DNA-binding protein HU [Lysinibacillus fusiformis ZC1]
 gi|126589883|gb|EAZ84014.1| DNA-binding protein HU (DNA-binding protein II) [Bacillus sp.
          B14905]
 gi|298726145|gb|EFI66737.1| DNA-binding protein HU [Lysinibacillus fusiformis ZC1]
 gi|327440783|dbj|BAK17148.1| bacterial nucleoid DNA-binding protein [Solibacillus silvestris
          StLB046]
          Length = 90

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 57/90 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV S+++  GLS+KD+++ V  +F+ I D+  +G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTELVNSVAEAAGLSKKDASKAVEAVFDTIQDALAKGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FK    LK  + 
Sbjct: 61 RNPQTGKEIEIAASKVPAFKPGKALKDAVK 90


>gi|187478558|ref|YP_786582.1| integration host factor subunit alpha [Bordetella avium 197N]
 gi|123752290|sp|Q2KZM3|IHFA_BORA1 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|115423144|emb|CAJ49675.1| integration host factor alpha-subunit [Bordetella avium 197N]
          Length = 116

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 61/106 (57%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+T+++L + + +  GL+++++   V T F EI ++  RG+++K+S F  F V+ K  R
Sbjct: 10  RTLTKAELAELLFERVGLNKREAKDIVDTFFEEIREALARGDSVKLSGFGNFQVRDKPPR 69

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT 108
            GRN +T + + I  RRVV F AS  LK  +       + + D+  
Sbjct: 70  PGRNPKTGETIPIAARRVVTFHASQKLKSTVEQSGNPAEVSDDEAA 115


>gi|289550748|ref|YP_003471652.1| DNA-binding protein HBsu [Staphylococcus lugdunensis HKU09-01]
 gi|289180280|gb|ADC87525.1| DNA-binding protein HBsu [Staphylococcus lugdunensis HKU09-01]
          Length = 90

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++  L++K +   V  +F  I  S  +GE +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAEQADLTKKQAGSAVDAVFESIQTSLSKGEKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGKEIEIPASKVPAFKAGKALKDAVK 90


>gi|90961862|ref|YP_535778.1| DNA-binding protein HU [Lactobacillus salivarius UCC118]
 gi|301299465|ref|ZP_07205740.1| DNA-binding protein HU [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|90821056|gb|ABD99695.1| DNA-binding protein HU [Lactobacillus salivarius UCC118]
 gi|300852928|gb|EFK80537.1| DNA-binding protein HU [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 91

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 54/89 (60%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           ++ L++ ++++ GL++KD+T  V  +F  I D+ V GE +++  F  F V+++ +R GR
Sbjct: 3  NKAALIERVAEKTGLTKKDATVAVDAVFETIQDALVDGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E++I   +V  FK    LK  + 
Sbjct: 63 NPQTGEEIEIPASKVPAFKPGKSLKDAVK 91


>gi|294497364|ref|YP_003561064.1| DNA-binding protein HU [Bacillus megaterium QM B1551]
 gi|295702737|ref|YP_003595812.1| DNA-binding protein HU [Bacillus megaterium DSM 319]
 gi|294347301|gb|ADE67630.1| DNA-binding protein HU [Bacillus megaterium QM B1551]
 gi|294800396|gb|ADF37462.1| DNA-binding protein HU [Bacillus megaterium DSM 319]
          Length = 90

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV +++ +  L++ D+++ V  L   I  +   GE I++  F TF V+++ +R G
Sbjct: 1  MNKTDLVNAVATKSELTKADASKAVDALLETISSTLGEGEKIQLIGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FKA   LK+ + 
Sbjct: 61 RNPQTGEEMQIPASKVPAFKAGKELKEAVK 90


>gi|47565972|ref|ZP_00237010.1| DNA-binding protein HU [Bacillus cereus G9241]
 gi|47556889|gb|EAL15219.1| DNA-binding protein HU [Bacillus cereus G9241]
          Length = 90

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 55/90 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ ++++   LS+KD+T+ V  +F+ I ++  +G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FK     K  + 
Sbjct: 61 RNPQTGEEIEIAASKVPAFKPGKAFKDAVK 90


>gi|152975541|ref|YP_001375058.1| histone family protein DNA-binding protein [Bacillus cereus
          subsp. cytotoxis NVH 391-98]
 gi|152024293|gb|ABS22063.1| histone family protein DNA-binding protein [Bacillus cytotoxicus
          NVH 391-98]
          Length = 90

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 59/90 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K++++   +S+KD++  V ++F+ I ++   G+ +++  F TF V+++ +R G
Sbjct: 1  MNKTELIKNVAQSADISQKDASVAVQSVFDTITNALQNGDKVQLIGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FKA   LK+ + 
Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAVK 90


>gi|312795978|ref|YP_004028900.1| integration host factor alpha-subunit [Burkholderia rhizoxinica HKI
           454]
 gi|312167753|emb|CBW74756.1| Integration host factor alpha-subunit [Burkholderia rhizoxinica HKI
           454]
          Length = 160

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 55/95 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +  + GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 59  TPTLTKAELAELLFDQVGLNKREAKDMVEAFFEAIRDALENGESVKLSGFGNFQLRDKPQ 118

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS  LK ++   
Sbjct: 119 RPGRNPKTGEAIPIAARRVVTFHASQKLKAQVESG 153


>gi|227551167|ref|ZP_03981216.1| DNA-binding protein II [Enterococcus faecium TX1330]
 gi|257877996|ref|ZP_05657649.1| DNA binding protein HU [Enterococcus faecium 1,230,933]
 gi|257881217|ref|ZP_05660870.1| DNA binding protein HU [Enterococcus faecium 1,231,502]
 gi|257884881|ref|ZP_05664534.1| DNA binding protein HU [Enterococcus faecium 1,231,501]
 gi|257887715|ref|ZP_05667368.1| DNA binding protein HU [Enterococcus faecium 1,141,733]
 gi|257889805|ref|ZP_05669458.1| DNA binding protein HU [Enterococcus faecium 1,231,410]
 gi|257892258|ref|ZP_05671911.1| DNA binding protein HU [Enterococcus faecium 1,231,408]
 gi|257896209|ref|ZP_05675862.1| DNA binding protein HU [Enterococcus faecium Com12]
 gi|257898847|ref|ZP_05678500.1| DNA binding protein HU [Enterococcus faecium Com15]
 gi|258616517|ref|ZP_05714287.1| DNA-binding protein HU [Enterococcus faecium DO]
 gi|260559047|ref|ZP_05831233.1| DNA binding protein HU [Enterococcus faecium C68]
 gi|261207581|ref|ZP_05922266.1| DNA binding protein HU [Enterococcus faecium TC 6]
 gi|289565093|ref|ZP_06445546.1| DNA-binding protein HU 1 [Enterococcus faecium D344SRF]
 gi|293379549|ref|ZP_06625691.1| DNA-binding protein HU [Enterococcus faecium PC4.1]
 gi|293556740|ref|ZP_06675303.1| DNA-binding protein HU [Enterococcus faecium E1039]
 gi|293563398|ref|ZP_06677847.1| DNA-binding protein HU 1 [Enterococcus faecium E1162]
 gi|293568056|ref|ZP_06679394.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Enterococcus faecium E1071]
 gi|293570250|ref|ZP_06681319.1| DNA-binding protein HU 1 [Enterococcus faecium E980]
 gi|294614845|ref|ZP_06694740.1| DNA-binding protein HU 1 [Enterococcus faecium E1636]
 gi|294618676|ref|ZP_06698210.1| DNA-binding protein HU 1 [Enterococcus faecium E1679]
 gi|294621938|ref|ZP_06701086.1| DNA-binding protein HU 1 [Enterococcus faecium U0317]
 gi|314938009|ref|ZP_07845319.1| DNA-binding protein HU [Enterococcus faecium TX0133a04]
 gi|314942005|ref|ZP_07848866.1| DNA-binding protein HU [Enterococcus faecium TX0133C]
 gi|314948742|ref|ZP_07852114.1| DNA-binding protein HU [Enterococcus faecium TX0082]
 gi|314951760|ref|ZP_07854799.1| DNA-binding protein HU [Enterococcus faecium TX0133A]
 gi|314991833|ref|ZP_07857291.1| DNA-binding protein HU [Enterococcus faecium TX0133B]
 gi|314995874|ref|ZP_07860961.1| DNA-binding protein HU [Enterococcus faecium TX0133a01]
 gi|227179729|gb|EEI60701.1| DNA-binding protein II [Enterococcus faecium TX1330]
 gi|257812224|gb|EEV40982.1| DNA binding protein HU [Enterococcus faecium 1,230,933]
 gi|257816875|gb|EEV44203.1| DNA binding protein HU [Enterococcus faecium 1,231,502]
 gi|257820719|gb|EEV47867.1| DNA binding protein HU [Enterococcus faecium 1,231,501]
 gi|257823769|gb|EEV50701.1| DNA binding protein HU [Enterococcus faecium 1,141,733]
 gi|257826165|gb|EEV52791.1| DNA binding protein HU [Enterococcus faecium 1,231,410]
 gi|257828637|gb|EEV55244.1| DNA binding protein HU [Enterococcus faecium 1,231,408]
 gi|257832774|gb|EEV59195.1| DNA binding protein HU [Enterococcus faecium Com12]
 gi|257836759|gb|EEV61833.1| DNA binding protein HU [Enterococcus faecium Com15]
 gi|260074804|gb|EEW63120.1| DNA binding protein HU [Enterococcus faecium C68]
 gi|260077964|gb|EEW65670.1| DNA binding protein HU [Enterococcus faecium TC 6]
 gi|289163100|gb|EFD10947.1| DNA-binding protein HU 1 [Enterococcus faecium D344SRF]
 gi|291589277|gb|EFF21087.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Enterococcus faecium E1071]
 gi|291592307|gb|EFF23921.1| DNA-binding protein HU 1 [Enterococcus faecium E1636]
 gi|291595059|gb|EFF26402.1| DNA-binding protein HU 1 [Enterococcus faecium E1679]
 gi|291598487|gb|EFF29556.1| DNA-binding protein HU 1 [Enterococcus faecium U0317]
 gi|291601072|gb|EFF31361.1| DNA-binding protein HU [Enterococcus faecium E1039]
 gi|291604659|gb|EFF34144.1| DNA-binding protein HU 1 [Enterococcus faecium E1162]
 gi|291609657|gb|EFF38918.1| DNA-binding protein HU 1 [Enterococcus faecium E980]
 gi|292641858|gb|EFF60026.1| DNA-binding protein HU [Enterococcus faecium PC4.1]
 gi|313589978|gb|EFR68823.1| DNA-binding protein HU [Enterococcus faecium TX0133a01]
 gi|313593644|gb|EFR72489.1| DNA-binding protein HU [Enterococcus faecium TX0133B]
 gi|313596039|gb|EFR74884.1| DNA-binding protein HU [Enterococcus faecium TX0133A]
 gi|313599257|gb|EFR78102.1| DNA-binding protein HU [Enterococcus faecium TX0133C]
 gi|313642584|gb|EFS07164.1| DNA-binding protein HU [Enterococcus faecium TX0133a04]
 gi|313644808|gb|EFS09388.1| DNA-binding protein HU [Enterococcus faecium TX0082]
          Length = 91

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 52/89 (58%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++L++ ++    L++KD+T  V  +F+ I D+   GE +++  F  F V+++ +R GR
Sbjct: 3  NKAELIEKVASATDLTKKDATAAVDAVFSTIQDALANGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E++I   +V  FK    LK  + 
Sbjct: 63 NPQTGEEIEIPASKVPAFKPGKALKDAVK 91


>gi|227510316|ref|ZP_03940365.1| DNA-binding protein HU [Lactobacillus brevis subsp. gravesensis
          ATCC 27305]
 gi|227513323|ref|ZP_03943372.1| DNA-binding protein HU [Lactobacillus buchneri ATCC 11577]
 gi|227524467|ref|ZP_03954516.1| DNA-binding protein HU [Lactobacillus hilgardii ATCC 8290]
 gi|227083196|gb|EEI18508.1| DNA-binding protein HU [Lactobacillus buchneri ATCC 11577]
 gi|227088337|gb|EEI23649.1| DNA-binding protein HU [Lactobacillus hilgardii ATCC 8290]
 gi|227189968|gb|EEI70035.1| DNA-binding protein HU [Lactobacillus brevis subsp. gravesensis
          ATCC 27305]
          Length = 91

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 54/89 (60%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV +++ E GL++KD+T  V  +F+ I  S  +GE +++  F  F V+Q+ +R GR
Sbjct: 3  NKAELVTNVATETGLTKKDATAAVDAVFDSIQASLAKGEKVQLIGFGNFEVRQRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT QE++I   +V  FK    LK  + 
Sbjct: 63 NPQTGQEIQIPASKVPAFKPGKALKDAVK 91


>gi|319892463|ref|YP_004149338.1| DNA-binding protein HBsu [Staphylococcus pseudintermedius
          HKU10-03]
 gi|317162159|gb|ADV05702.1| DNA-binding protein HBsu [Staphylococcus pseudintermedius
          HKU10-03]
 gi|323464434|gb|ADX76587.1| DNA-binding protein HU [Staphylococcus pseudintermedius ED99]
          Length = 90

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++  L++K++   V  +F  I  S  +GE +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAEQADLTKKEAGLAVDAVFEAIQTSLAKGEKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALKDAVK 90


>gi|224476592|ref|YP_002634198.1| DNA-binding protein HU [Staphylococcus carnosus subsp. carnosus
          TM300]
 gi|222421199|emb|CAL28013.1| DNA-binding protein HU [Staphylococcus carnosus subsp. carnosus
          TM300]
          Length = 90

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++  L++K++   V  +F  I  S  +GE +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAEQAELTKKEAGLAVDAVFESIQSSLSKGEKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALKDAVK 90


>gi|295426287|ref|ZP_06818947.1| DNA-binding protein HU [Lactobacillus amylolyticus DSM 11664]
 gi|295064026|gb|EFG54974.1| DNA-binding protein HU [Lactobacillus amylolyticus DSM 11664]
          Length = 117

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
            +++LV  ++ +  L++K+    V  LF+ I ++  +G  +++  F TF V+ + +R GR
Sbjct: 29  NKAELVSEVASKTDLTKKEVAAAVEALFSSIQENLSKGNKVQLIGFGTFEVRHRAARKGR 88

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N QT  E++I    V  FK    LK  + 
Sbjct: 89  NPQTGAEIQIPASEVPAFKPGKALKYAVK 117


>gi|223043293|ref|ZP_03613340.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Staphylococcus capitis SK14]
 gi|314933655|ref|ZP_07841020.1| DNA-binding protein HU [Staphylococcus caprae C87]
 gi|222443504|gb|EEE49602.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Staphylococcus capitis SK14]
 gi|313653805|gb|EFS17562.1| DNA-binding protein HU [Staphylococcus caprae C87]
          Length = 90

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++  L++K++   V  +F  I  S  +GE +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQKSLAKGEKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALKDAVK 90


>gi|294501077|ref|YP_003564777.1| non-specific DNA-binding protein HBsu [Bacillus megaterium QM
          B1551]
 gi|295706425|ref|YP_003599500.1| non-specific DNA-binding protein HBsu [Bacillus megaterium DSM
          319]
 gi|294351014|gb|ADE71343.1| non-specific DNA-binding protein HBsu [Bacillus megaterium QM
          B1551]
 gi|294804084|gb|ADF41150.1| non-specific DNA-binding protein HBsu [Bacillus megaterium DSM
          319]
          Length = 90

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   LS+KD+T+ V  +F+ I ++    + +++  F  F V+++ +R G
Sbjct: 1  MNKTELINAVAEASELSKKDATKAVDAVFDTILEALKAEDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FK    LK  + 
Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALKDAVK 90


>gi|56963393|ref|YP_175124.1| DNA-binding protein HU [Bacillus clausii KSM-K16]
 gi|56909636|dbj|BAD64163.1| DNA-binding protein HU [Bacillus clausii KSM-K16]
          Length = 91

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 58/91 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ ++S++  +S+KD+++ V  +FN I +S V+G  +++  F +F V+++ +R G
Sbjct: 1  MNKTDLINAVSEQAEISKKDASKAVDAVFNGITESLVKGAKVQLVGFGSFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E++I   +   FK    LK  + +
Sbjct: 61 RNPQTGEEIEIPATKNPAFKPGKQLKDAVNE 91


>gi|254514390|ref|ZP_05126451.1| DNA-binding protein HU [gamma proteobacterium NOR5-3]
 gi|219676633|gb|EED32998.1| DNA-binding protein HU [gamma proteobacterium NOR5-3]
          Length = 91

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+ +I+    +++ D+ R +  + + I ++  RG+ + +  F TF VK + +R G
Sbjct: 1  MNKSDLIDAIASAADINKSDAGRALDAVVDSITETLKRGDQVSLVGFGTFSVKHRAARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + +KI    V  FKA   LK  +  
Sbjct: 61 RNPQTGETIKIKASNVPGFKAGKALKDAVNQ 91


>gi|260428384|ref|ZP_05782363.1| integration host factor, alpha subunit [Citreicella sp. SE45]
 gi|260422876|gb|EEX16127.1| integration host factor, alpha subunit [Citreicella sp. SE45]
          Length = 149

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/100 (47%), Positives = 67/100 (67%), Gaps = 1/100 (1%)

Query: 1   MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           MS KT+TR DL +++ +E GLSR +S   V T+   + D+ V GE +KISSF TF V+ K
Sbjct: 50  MSEKTLTRMDLSEAVFREVGLSRNESAELVETVLQHMSDALVEGEQVKISSFGTFSVRDK 109

Query: 60  GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
            +RVGRN +T +EV I PRRV+ F+ S  +K+R+    +G
Sbjct: 110 AARVGRNPKTGEEVPIQPRRVLTFRPSHQMKERVAAGNKG 149


>gi|301066428|ref|YP_003788451.1| nucleoid DNA-binding protein [Lactobacillus casei str. Zhang]
 gi|300438835|gb|ADK18601.1| nucleoid DNA-binding protein [Lactobacillus casei str. Zhang]
 gi|327382402|gb|AEA53878.1| DNA-binding protein HU-beta-like protein [Lactobacillus casei
          LC2W]
 gi|327385603|gb|AEA57077.1| DNA-binding protein HU-beta-like protein [Lactobacillus casei
          BD-II]
          Length = 93

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 53/89 (59%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++L++S++   GL++KD+T  V  +F  I DS  +G+ +++  F  F V+++ +R GR
Sbjct: 5  NKAELIESVATATGLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKGR 64

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E+KI   +V  FK    LK  + 
Sbjct: 65 NPQTGAEIKIPASKVPAFKPGKALKDAVK 93


>gi|304406950|ref|ZP_07388604.1| histone family protein DNA-binding protein [Paenibacillus
          curdlanolyticus YK9]
 gi|304343937|gb|EFM09777.1| histone family protein DNA-binding protein [Paenibacillus
          curdlanolyticus YK9]
          Length = 91

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 53/87 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  +++   LS+KD+T+ V  +F+ I D+   G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTELIAKVAELTELSKKDATKAVDAVFDAISDALQTGDKVQLVGFGNFEVRERQARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN QT +E++I   ++  FK    LK 
Sbjct: 61 RNPQTGEEIEIAASKMPAFKPGKSLKD 87


>gi|30020445|ref|NP_832076.1| DNA-binding protein HU [Bacillus cereus ATCC 14579]
 gi|75762127|ref|ZP_00742029.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
 gi|206971712|ref|ZP_03232662.1| DNA-binding protein HU [Bacillus cereus AH1134]
 gi|218232049|ref|YP_002367059.1| DNA-binding protein HU [Bacillus cereus B4264]
 gi|218897327|ref|YP_002445738.1| DNA-binding protein HU [Bacillus cereus G9842]
 gi|228900972|ref|ZP_04065185.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 4222]
 gi|228908124|ref|ZP_04071972.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 200]
 gi|228921073|ref|ZP_04084408.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228939512|ref|ZP_04102100.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228952694|ref|ZP_04114768.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
 gi|228958629|ref|ZP_04120347.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228965347|ref|ZP_04126439.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar sotto
          str. T04001]
 gi|228972365|ref|ZP_04132976.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228978978|ref|ZP_04139343.1| DNA-binding protein HU 1 [Bacillus thuringiensis Bt407]
 gi|229044105|ref|ZP_04191791.1| DNA-binding protein HU 1 [Bacillus cereus AH676]
 gi|229069884|ref|ZP_04203166.1| DNA-binding protein HU 1 [Bacillus cereus F65185]
 gi|229109797|ref|ZP_04239382.1| DNA-binding protein HU 1 [Bacillus cereus Rock1-15]
 gi|229127753|ref|ZP_04256742.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-Cer4]
 gi|229144952|ref|ZP_04273348.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST24]
 gi|229150577|ref|ZP_04278792.1| DNA-binding protein HU 1 [Bacillus cereus m1550]
 gi|229178719|ref|ZP_04306083.1| DNA-binding protein HU 1 [Bacillus cereus 172560W]
 gi|229190436|ref|ZP_04317436.1| DNA-binding protein HU 1 [Bacillus cereus ATCC 10876]
 gi|296502915|ref|YP_003664615.1| DNA-binding protein HU [Bacillus thuringiensis BMB171]
 gi|29895996|gb|AAP09277.1| DNA-binding protein HU [Bacillus cereus ATCC 14579]
 gi|74490387|gb|EAO53701.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
 gi|206733697|gb|EDZ50869.1| DNA-binding protein HU [Bacillus cereus AH1134]
 gi|218160006|gb|ACK59998.1| DNA-binding protein HU [Bacillus cereus B4264]
 gi|218543334|gb|ACK95728.1| DNA-binding protein HU [Bacillus cereus G9842]
 gi|228593049|gb|EEK50868.1| DNA-binding protein HU 1 [Bacillus cereus ATCC 10876]
 gi|228604877|gb|EEK62334.1| DNA-binding protein HU 1 [Bacillus cereus 172560W]
 gi|228632886|gb|EEK89500.1| DNA-binding protein HU 1 [Bacillus cereus m1550]
 gi|228638474|gb|EEK94908.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST24]
 gi|228655830|gb|EEL11679.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-Cer4]
 gi|228673642|gb|EEL28901.1| DNA-binding protein HU 1 [Bacillus cereus Rock1-15]
 gi|228713287|gb|EEL65180.1| DNA-binding protein HU 1 [Bacillus cereus F65185]
 gi|228725218|gb|EEL76489.1| DNA-binding protein HU 1 [Bacillus cereus AH676]
 gi|228780760|gb|EEM28973.1| DNA-binding protein HU 1 [Bacillus thuringiensis Bt407]
 gi|228787382|gb|EEM35350.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228794337|gb|EEM41851.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar sotto
          str. T04001]
 gi|228801050|gb|EEM47949.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228806970|gb|EEM53515.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
 gi|228820212|gb|EEM66249.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228838619|gb|EEM83925.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228851542|gb|EEM96348.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 200]
 gi|228858670|gb|EEN03117.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 4222]
 gi|296323967|gb|ADH06895.1| DNA-binding protein HU [Bacillus thuringiensis BMB171]
 gi|326940059|gb|AEA15955.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 90

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 59/90 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K++++   +S+KD++  V ++F+ I ++   G+ +++  F TF V+++ +R G
Sbjct: 1  MNKTELIKNVAQSADISQKDASAAVQSVFDTIANALQSGDKVQLIGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FKA   LK+ + 
Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAVK 90


>gi|315661119|gb|ADU54569.1| histone-like DNA binding protein [Lactobacillus agilis]
          Length = 101

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 52/89 (58%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
            ++ L+++++++ GL++KD+T  V  +F  I D    GE +++  F  F V+++ +R GR
Sbjct: 13  NKAQLIENVAEKTGLTKKDATVAVDAVFGSIQDFLKDGEKVQLIGFGNFEVRERAARKGR 72

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N QT  E++I   +V  FK    LK  + 
Sbjct: 73  NPQTGAEIEIPASKVPAFKPGKALKDAVK 101


>gi|317403230|gb|EFV83749.1| integration host factor subunit alpha [Achromobacter xylosoxidans
           C54]
          Length = 112

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 59/103 (57%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+T+++L + + +  GL+++++   V T F EI D+  RG+++K+S F  F V+ K  R
Sbjct: 10  RTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPPR 69

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
            GRN +T + + I  RRVV F AS  LK  +          ++
Sbjct: 70  PGRNPKTGETIPIAARRVVTFHASQKLKSVVEQATPAAPDAEE 112


>gi|199598701|ref|ZP_03212115.1| nucleoid DNA-binding protein [Lactobacillus rhamnosus HN001]
 gi|258508386|ref|YP_003171137.1| DNA-binding protein HU [Lactobacillus rhamnosus GG]
 gi|258539597|ref|YP_003174096.1| nucleoid, histone-like DNA-binding protein HU [Lactobacillus
          rhamnosus Lc 705]
 gi|199590389|gb|EDY98481.1| nucleoid DNA-binding protein [Lactobacillus rhamnosus HN001]
 gi|257148313|emb|CAR87286.1| DNA-binding protein HU [Lactobacillus rhamnosus GG]
 gi|257151273|emb|CAR90245.1| DNA-binding protein HU [Lactobacillus rhamnosus Lc 705]
 gi|259649700|dbj|BAI41862.1| DNA-binding protein [Lactobacillus rhamnosus GG]
 gi|328462383|gb|EGF34439.1| nucleoid, histone-like DNA-binding protein HU [Lactobacillus
          rhamnosus MTCC 5462]
          Length = 91

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 53/89 (59%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++L++S++   GL++KD+T  V  +F  I DS  +G+ +++  F  F V+++ +R GR
Sbjct: 3  NKAELIESVASATGLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E+KI   +V  FK    LK  + 
Sbjct: 63 NPQTGAEIKIPASKVPAFKPGKALKDAVK 91


>gi|56964681|ref|YP_176412.1| DNA-binding protein HU [Bacillus clausii KSM-K16]
 gi|56910924|dbj|BAD65451.1| DNA-binding protein HU [Bacillus clausii KSM-K16]
          Length = 90

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 56/90 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   LS+KD++  V ++F+ I +S  +GE++++  F  F V+++ +R G
Sbjct: 1  MNKTELINALAERTQLSKKDASAAVNSMFDLISESLGKGESVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +   FKA   LK  + 
Sbjct: 61 RNPQTGEEIDIAATKTPAFKAGKQLKDAVK 90


>gi|51894365|ref|YP_077056.1| non-specific DNA-binding protein [Symbiobacterium thermophilum
          IAM 14863]
 gi|51858054|dbj|BAD42212.1| non-specific DNA-binding protein [Symbiobacterium thermophilum
          IAM 14863]
          Length = 89

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLV S++++ GL++KD+ + +  +   I ++  +G+ + +  F TF V+ + +R G
Sbjct: 1  MNKQDLVASVAEKSGLTKKDAEKALNAVVESIKEALKKGDKVSLVGFGTFEVRNRAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + +KI   +V  F+    LK+ +
Sbjct: 61 RNPQTGEPIKIPAGKVPAFRPGKELKESV 89


>gi|323701600|ref|ZP_08113272.1| histone family protein DNA-binding protein [Desulfotomaculum
          nigrificans DSM 574]
 gi|323533373|gb|EGB23240.1| histone family protein DNA-binding protein [Desulfotomaculum
          nigrificans DSM 574]
          Length = 95

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 56/91 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  L++KD+ + V+ + + I ++  +G+ I++  F TF  K + +R G
Sbjct: 1  MNKAELISAVAEKTELTKKDAEKAVSAVLDSIQEAMAKGDKIQLVGFGTFESKARKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + ++I   RV VFK    LK  + +
Sbjct: 61 RNPQTGETIQIPATRVPVFKPGKALKDAVAN 91


>gi|88703270|ref|ZP_01100986.1| Histone-like bacterial DNA-binding protein [Congregibacter
           litoralis KT71]
 gi|88701984|gb|EAQ99087.1| Histone-like bacterial DNA-binding protein [Congregibacter
           litoralis KT71]
          Length = 115

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 50/90 (55%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +SDL+ +I+    +++ D+ R +  + + I D+  +G+ + +  F TF VK + +R G
Sbjct: 25  VNKSDLIDAIASAADINKSDAGRALDAVVDSITDTLKKGDQVSLVGFGTFSVKHRAARDG 84

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN QT + +KI    V  FKA   LK  + 
Sbjct: 85  RNPQTGETIKIKASNVPGFKAGKALKDAVN 114


>gi|313902512|ref|ZP_07835913.1| bacterial nucleoid protein Hbs [Thermaerobacter subterraneus DSM
          13965]
 gi|313467198|gb|EFR62711.1| bacterial nucleoid protein Hbs [Thermaerobacter subterraneus DSM
          13965]
          Length = 90

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +I+++ GL++KDS R V      I ++  RG+ + +  F TF V+ + +R G
Sbjct: 1  MNKPELVNAIAEKTGLNKKDSERAVNAFVESISEALARGDKVSLVGFGTFEVRTRQARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T Q + I   +V  FK    L+  + 
Sbjct: 61 RNPRTGQTLTIPAAKVPAFKPGKQLRDMVK 90


>gi|308069517|ref|YP_003871122.1| DNA-binding protein HU 1 (DNA-binding protein II) [Paenibacillus
          polymyxa E681]
 gi|305858796|gb|ADM70584.1| DNA-binding protein HU 1 (DNA-binding protein II) [Paenibacillus
          polymyxa E681]
          Length = 90

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  +S+   LS+KD T+ +  +F  I  +   G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINQVSESTELSKKDVTKAIDAVFEAISGALQSGDKVQLVGFGNFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   ++  FK    LK  I 
Sbjct: 61 RNPQTGEEIEIPASKIPAFKPGKALKDGIK 90


>gi|89099134|ref|ZP_01172013.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus sp. NRRL
          B-14911]
 gi|89086264|gb|EAR65386.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Bacillus sp. NRRL
          B-14911]
          Length = 90

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   LS+KD+T+ V  +F+ I ++   G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTELINAVAEAGELSKKDATKAVDAVFDTILNALKNGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I   +V  FK    LK  + 
Sbjct: 61 RNPQTGDEIEIAASKVPAFKPGKALKDAVK 90


>gi|169827490|ref|YP_001697648.1| DNA-binding protein HU [Lysinibacillus sphaericus C3-41]
 gi|168991978|gb|ACA39518.1| DNA-binding protein HU (DNA-binding protein II) (HB)
          [Lysinibacillus sphaericus C3-41]
          Length = 93

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 57/90 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV S+++  GLS+KD+++ V  +F+ I D+  +G+ +++  F  F V+++ +R G
Sbjct: 4  VNKTELVNSVAEAAGLSKKDASKAVEAVFDTIQDALAKGDKVQLIGFGNFEVRERAARKG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FK    LK  + 
Sbjct: 64 RNPQTGKEIEIAASKVPAFKPGKALKDAVK 93


>gi|311105461|ref|YP_003978314.1| integration host factor subunit alpha [Achromobacter xylosoxidans
           A8]
 gi|310760150|gb|ADP15599.1| integration host factor, alpha subunit [Achromobacter xylosoxidans
           A8]
          Length = 112

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 58/103 (56%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+T+++L + + +  GL+++++   V T F EI D+  RG+++K+S F  F V+ K  R
Sbjct: 7   RTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPPR 66

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
            GRN +T + + I  RRVV F AS  LK  +           D
Sbjct: 67  PGRNPKTGETIPIAARRVVTFHASQKLKSVVEQATPAAPEASD 109


>gi|116494867|ref|YP_806601.1| nucleoid DNA-binding protein [Lactobacillus casei ATCC 334]
 gi|191638374|ref|YP_001987540.1| Histone-like DNA-binding protein HU [Lactobacillus casei BL23]
 gi|239631540|ref|ZP_04674571.1| bacterial nucleoid protein Hbs [Lactobacillus paracasei subsp.
          paracasei 8700:2]
 gi|116105017|gb|ABJ70159.1| bacterial nucleoid protein Hbs [Lactobacillus casei ATCC 334]
 gi|190712676|emb|CAQ66682.1| Histone-like DNA-binding protein HU [Lactobacillus casei BL23]
 gi|239526005|gb|EEQ65006.1| bacterial nucleoid protein Hbs [Lactobacillus paracasei subsp.
          paracasei 8700:2]
          Length = 91

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 53/89 (59%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++L++S++   GL++KD+T  V  +F  I DS  +G+ +++  F  F V+++ +R GR
Sbjct: 3  NKAELIESVATATGLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E+KI   +V  FK    LK  + 
Sbjct: 63 NPQTGAEIKIPASKVPAFKPGKALKDAVK 91


>gi|229096853|ref|ZP_04227822.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-29]
 gi|229102961|ref|ZP_04233650.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-28]
 gi|229115841|ref|ZP_04245239.1| DNA-binding protein HU 1 [Bacillus cereus Rock1-3]
 gi|229161324|ref|ZP_04289309.1| DNA-binding protein HU 1 [Bacillus cereus R309803]
 gi|228622138|gb|EEK78979.1| DNA-binding protein HU 1 [Bacillus cereus R309803]
 gi|228667584|gb|EEL23028.1| DNA-binding protein HU 1 [Bacillus cereus Rock1-3]
 gi|228680376|gb|EEL34564.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-28]
 gi|228686463|gb|EEL40372.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-29]
          Length = 90

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 59/90 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K++++   +S+KD++  V ++F+ I ++   G+ +++  F TF V+++ +R G
Sbjct: 1  MNKTELIKNVAQTADISQKDASAAVQSVFDTIANALQSGDKVQLIGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FKA   LK+ + 
Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAVK 90


>gi|319779416|ref|YP_004130329.1| Integration host factor alpha subunit [Taylorella equigenitalis
           MCE9]
 gi|317109440|gb|ADU92186.1| Integration host factor alpha subunit [Taylorella equigenitalis
           MCE9]
          Length = 124

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 59/94 (62%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +KT+T+++L + + +  GL+++++   V   FN+I D+   GE +K+S F  F V+ K +
Sbjct: 30  TKTLTKAELAEMLFESVGLNKREAKEIVDQFFNQIRDALANGEHVKLSGFGNFQVRDKAA 89

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R GRN +T + + I+ RRVV F AS  LK  + +
Sbjct: 90  RPGRNPKTGEVIPIEARRVVTFHASQKLKNAVGE 123


>gi|163940149|ref|YP_001645033.1| histone family protein DNA-binding protein [Bacillus
          weihenstephanensis KBAB4]
 gi|229011627|ref|ZP_04168810.1| DNA-binding protein HU 1 [Bacillus mycoides DSM 2048]
 gi|229060025|ref|ZP_04197396.1| DNA-binding protein HU 1 [Bacillus cereus AH603]
 gi|229133208|ref|ZP_04262040.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST196]
 gi|229167194|ref|ZP_04294935.1| DNA-binding protein HU 1 [Bacillus cereus AH621]
 gi|163862346|gb|ABY43405.1| histone family protein DNA-binding protein [Bacillus
          weihenstephanensis KBAB4]
 gi|228616232|gb|EEK73316.1| DNA-binding protein HU 1 [Bacillus cereus AH621]
 gi|228650227|gb|EEL06230.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST196]
 gi|228719244|gb|EEL70852.1| DNA-binding protein HU 1 [Bacillus cereus AH603]
 gi|228749585|gb|EEL99427.1| DNA-binding protein HU 1 [Bacillus mycoides DSM 2048]
          Length = 90

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 59/90 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LVK++++   +S+KD++  V ++F+ I ++   G+ +++  F TF V+++ +R G
Sbjct: 1  MNKTELVKNVAQSADISQKDASAAVQSVFDTIANALQSGDKVQLIGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FKA   LK+ + 
Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAVK 90


>gi|93006477|ref|YP_580914.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis
          K5]
 gi|92394155|gb|ABE75430.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis
          K5]
          Length = 90

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ SI+++ GL++  +   +  +   + ++   G++I +  F TF VK + +R G
Sbjct: 1  MNKSELIDSIAEKSGLNKTQAGDALNAVMESVGEALEAGDSISLVGFGTFSVKDRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E+ I   +V  FKA   LK+R+ 
Sbjct: 61 RNPKTGEELSIPASKVPSFKAGKNLKERLN 90


>gi|331701407|ref|YP_004398366.1| histone family protein DNA-binding protein [Lactobacillus
          buchneri NRRL B-30929]
 gi|329128750|gb|AEB73303.1| histone family protein DNA-binding protein [Lactobacillus
          buchneri NRRL B-30929]
          Length = 91

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 52/89 (58%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV +++   GL++KD+T  V  +F  I  S  +G+ +++  F  F V+Q+ +R GR
Sbjct: 3  NKAELVTNVAAATGLTKKDATSAVDAVFESIQASLAKGDKVQLIGFGNFEVRQRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT QE++I   +V  FK    LK  + 
Sbjct: 63 NPQTGQEIQIPASKVPAFKPGKALKDAVK 91


>gi|56475892|ref|YP_157481.1| integration host factor subunit alpha [Aromatoleum aromaticum EbN1]
 gi|81677575|sp|Q5P7Y1|IHFA_AZOSE RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|56311935|emb|CAI06580.1| integration host factor, alpha-subunit [Aromatoleum aromaticum
           EbN1]
          Length = 103

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 56/103 (54%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           M+ T+T+++L   + +  GL+++++   V   F EI  +  RGE +K+S F  F ++ K 
Sbjct: 1   MNVTLTKAELADLLFERVGLNKREAKDMVEGFFEEIRQALERGECVKLSGFGNFQLRDKP 60

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
            R GRN +T +E+ I  RRVV F AS  LK  +       K  
Sbjct: 61  QRPGRNPKTGEEIPITARRVVTFHASQKLKAAVEQLSDASKQP 103


>gi|329907561|ref|ZP_08274684.1| Integration host factor alpha subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546938|gb|EGF31844.1| Integration host factor alpha subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 137

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 60/96 (62%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            T+T+++L + + ++ GL+++++   V T F+EI D+  RGE +K+S F  F ++ K  R
Sbjct: 35  PTLTKAELAELLFEQVGLNKREAKDMVETFFDEIRDALERGELVKLSGFGNFQLRDKPQR 94

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            GRN +T +E+ I  RRVV F AS  LK  + ++  
Sbjct: 95  PGRNPKTGEEIPITARRVVTFHASQKLKSMVENEYP 130


>gi|328957353|ref|YP_004374739.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Carnobacterium sp. 17-4]
 gi|328673677|gb|AEB29723.1| non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Carnobacterium sp. 17-4]
          Length = 91

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 51/89 (57%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++L+++++   GL++KD+T  V  +F  I  S   GE ++I  F  F V+ + +R GR
Sbjct: 3  NKAELIENVATSTGLTKKDATSAVDAVFESIQTSLSEGEKVQIIGFGNFEVRDRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E++I   +V  FK    LK  + 
Sbjct: 63 NPQTGEEIQIAASKVPAFKPGKALKDAVK 91


>gi|81428626|ref|YP_395626.1| histone-like DNA-binding protein HU [Lactobacillus sakei subsp.
          sakei 23K]
 gi|78610268|emb|CAI55317.1| Histone-like DNA-binding protein HU [Lactobacillus sakei subsp.
          sakei 23K]
          Length = 91

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 54/89 (60%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           ++ L+++++ + GL++KD+T  V  +F  I D+  +G+ +++  F TF V+++ +R GR
Sbjct: 3  NKAQLIENVASKTGLTKKDATAAVDAVFGSIQDTLKQGDKVQLIGFGTFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E+KI   +V  FK    LK  + 
Sbjct: 63 NPQTGAEIKIPASKVPAFKPGKALKDSVK 91


>gi|146296237|ref|YP_001180008.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          saccharolyticus DSM 8903]
 gi|302871272|ref|YP_003839908.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          obsidiansis OB47]
 gi|312128213|ref|YP_003993087.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          hydrothermalis 108]
 gi|312134569|ref|YP_004001907.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          owensensis OL]
 gi|312623028|ref|YP_004024641.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          kronotskyensis 2002]
 gi|312792841|ref|YP_004025764.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312876107|ref|ZP_07736095.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          lactoaceticus 6A]
 gi|145409813|gb|ABP66817.1| bacterial nucleoid protein Hbs [Caldicellulosiruptor
          saccharolyticus DSM 8903]
 gi|302574131|gb|ADL41922.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          obsidiansis OB47]
 gi|311774620|gb|ADQ04107.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          owensensis OL]
 gi|311778232|gb|ADQ07718.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311797093|gb|EFR13434.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          lactoaceticus 6A]
 gi|312179981|gb|ADQ40151.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312203495|gb|ADQ46822.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          kronotskyensis 2002]
          Length = 91

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 59/91 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++ GL++KD+ + +    + + ++  +GE +++  F +F V+++  RVG
Sbjct: 1  MNKTDLISAMAEKSGLTKKDAEKALNAFVDAVTEALSKGEKVQLVGFGSFEVRERAERVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E+KI   +V VFKA  +LK  +  
Sbjct: 61 RNPQTQEEIKIPATKVPVFKAGKMLKDAVAK 91


>gi|259503208|ref|ZP_05746110.1| DNA-binding protein HU [Lactobacillus antri DSM 16041]
 gi|312869155|ref|ZP_07729329.1| DNA-binding protein HU [Lactobacillus oris PB013-T2-3]
 gi|259168865|gb|EEW53360.1| DNA-binding protein HU [Lactobacillus antri DSM 16041]
 gi|311095401|gb|EFQ53671.1| DNA-binding protein HU [Lactobacillus oris PB013-T2-3]
          Length = 91

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 53/89 (59%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV +++   GL++KD+T  V  +F+ I  S  +GE +++  F  F V+Q+ +R GR
Sbjct: 3  NKAELVSNVANATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT QE++I   +V  FK    LK  + 
Sbjct: 63 NPQTGQEIQIPASKVPAFKPGKALKDAVK 91


>gi|30262382|ref|NP_844759.1| DNA-binding protein HU [Bacillus anthracis str. Ames]
 gi|42781470|ref|NP_978717.1| DNA-binding protein HU [Bacillus cereus ATCC 10987]
 gi|47527672|ref|YP_019021.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor']
 gi|47565733|ref|ZP_00236773.1| DNA-binding protein HU [Bacillus cereus G9241]
 gi|49185222|ref|YP_028474.1| DNA-binding protein HU [Bacillus anthracis str. Sterne]
 gi|49479951|ref|YP_036479.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian
          str. 97-27]
 gi|52143101|ref|YP_083727.1| DNA-binding protein HU [Bacillus cereus E33L]
 gi|65319674|ref|ZP_00392633.1| COG0776: Bacterial nucleoid DNA-binding protein [Bacillus
          anthracis str. A2012]
 gi|118477778|ref|YP_894929.1| HU family DNA-binding protein [Bacillus thuringiensis str. Al
          Hakam]
 gi|165870548|ref|ZP_02215202.1| DNA-binding protein HU [Bacillus anthracis str. A0488]
 gi|167633079|ref|ZP_02391405.1| DNA-binding protein HU [Bacillus anthracis str. A0442]
 gi|167639624|ref|ZP_02397894.1| DNA-binding protein HU [Bacillus anthracis str. A0193]
 gi|170686924|ref|ZP_02878143.1| DNA-binding protein HU [Bacillus anthracis str. A0465]
 gi|170706668|ref|ZP_02897127.1| DNA-binding protein HU [Bacillus anthracis str. A0389]
 gi|177649761|ref|ZP_02932763.1| DNA-binding protein HU [Bacillus anthracis str. A0174]
 gi|190565679|ref|ZP_03018599.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I]
 gi|196034013|ref|ZP_03101424.1| DNA-binding protein HU [Bacillus cereus W]
 gi|196039953|ref|ZP_03107256.1| DNA-binding protein HU [Bacillus cereus NVH0597-99]
 gi|196043718|ref|ZP_03110956.1| DNA-binding protein HU [Bacillus cereus 03BB108]
 gi|206973759|ref|ZP_03234677.1| DNA-binding protein HU [Bacillus cereus H3081.97]
 gi|217959874|ref|YP_002338430.1| DNA-binding protein HU [Bacillus cereus AH187]
 gi|218903511|ref|YP_002451345.1| DNA-binding protein HU [Bacillus cereus AH820]
 gi|222095963|ref|YP_002530020.1| DNA-binding protein hu [Bacillus cereus Q1]
 gi|225864340|ref|YP_002749718.1| DNA-binding protein HU [Bacillus cereus 03BB102]
 gi|227814812|ref|YP_002814821.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684]
 gi|228914965|ref|ZP_04078570.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228927433|ref|ZP_04090489.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228933667|ref|ZP_04096515.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228945981|ref|ZP_04108323.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228985463|ref|ZP_04145620.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|229030079|ref|ZP_04186143.1| DNA-binding protein HU 1 [Bacillus cereus AH1271]
 gi|229091352|ref|ZP_04222567.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-42]
 gi|229121924|ref|ZP_04251143.1| DNA-binding protein HU 1 [Bacillus cereus 95/8201]
 gi|229139067|ref|ZP_04267644.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST26]
 gi|229155954|ref|ZP_04284055.1| DNA-binding protein HU 1 [Bacillus cereus ATCC 4342]
 gi|229184586|ref|ZP_04311788.1| DNA-binding protein HU 1 [Bacillus cereus BGSC 6E1]
 gi|229196589|ref|ZP_04323333.1| DNA-binding protein HU 1 [Bacillus cereus m1293]
 gi|229602245|ref|YP_002866714.1| DNA-binding protein HU [Bacillus anthracis str. A0248]
 gi|254684954|ref|ZP_05148814.1| DNA-binding protein HU [Bacillus anthracis str. CNEVA-9066]
 gi|254722361|ref|ZP_05184149.1| DNA-binding protein HU [Bacillus anthracis str. A1055]
 gi|254737402|ref|ZP_05195106.1| DNA-binding protein HU [Bacillus anthracis str. Western North
          America USA6153]
 gi|254743414|ref|ZP_05201099.1| DNA-binding protein HU [Bacillus anthracis str. Kruger B]
 gi|254751717|ref|ZP_05203754.1| DNA-binding protein HU [Bacillus anthracis str. Vollum]
 gi|254760236|ref|ZP_05212260.1| DNA-binding protein HU [Bacillus anthracis str. Australia 94]
 gi|301053896|ref|YP_003792107.1| DNA-binding protein HU [Bacillus anthracis CI]
 gi|30257013|gb|AAP26245.1| DNA-binding protein HU [Bacillus anthracis str. Ames]
 gi|42737392|gb|AAS41325.1| DNA-binding protein HU [Bacillus cereus ATCC 10987]
 gi|47502820|gb|AAT31496.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor']
 gi|47557369|gb|EAL15697.1| DNA-binding protein HU [Bacillus cereus G9241]
 gi|49179149|gb|AAT54525.1| DNA-binding protein HU [Bacillus anthracis str. Sterne]
 gi|49331507|gb|AAT62153.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian
          str. 97-27]
 gi|51976570|gb|AAU18120.1| DNA-binding protein HU [Bacillus cereus E33L]
 gi|118417003|gb|ABK85422.1| HU family DNA-binding protein [Bacillus thuringiensis str. Al
          Hakam]
 gi|164713703|gb|EDR19226.1| DNA-binding protein HU [Bacillus anthracis str. A0488]
 gi|167512333|gb|EDR87709.1| DNA-binding protein HU [Bacillus anthracis str. A0193]
 gi|167531891|gb|EDR94556.1| DNA-binding protein HU [Bacillus anthracis str. A0442]
 gi|170128399|gb|EDS97267.1| DNA-binding protein HU [Bacillus anthracis str. A0389]
 gi|170668975|gb|EDT19719.1| DNA-binding protein HU [Bacillus anthracis str. A0465]
 gi|172084835|gb|EDT69893.1| DNA-binding protein HU [Bacillus anthracis str. A0174]
 gi|190563706|gb|EDV17671.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I]
 gi|195993693|gb|EDX57650.1| DNA-binding protein HU [Bacillus cereus W]
 gi|196026027|gb|EDX64696.1| DNA-binding protein HU [Bacillus cereus 03BB108]
 gi|196029212|gb|EDX67816.1| DNA-binding protein HU [Bacillus cereus NVH0597-99]
 gi|206747915|gb|EDZ59304.1| DNA-binding protein HU [Bacillus cereus H3081.97]
 gi|217067193|gb|ACJ81443.1| DNA-binding protein HU [Bacillus cereus AH187]
 gi|218535688|gb|ACK88086.1| DNA-binding protein HU [Bacillus cereus AH820]
 gi|221240021|gb|ACM12731.1| DNA-binding protein HU [Bacillus cereus Q1]
 gi|225788591|gb|ACO28808.1| DNA-binding protein HU [Bacillus cereus 03BB102]
 gi|227004414|gb|ACP14157.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684]
 gi|228586945|gb|EEK45019.1| DNA-binding protein HU 1 [Bacillus cereus m1293]
 gi|228598903|gb|EEK56521.1| DNA-binding protein HU 1 [Bacillus cereus BGSC 6E1]
 gi|228627561|gb|EEK84287.1| DNA-binding protein HU 1 [Bacillus cereus ATCC 4342]
 gi|228644422|gb|EEL00677.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST26]
 gi|228661573|gb|EEL17194.1| DNA-binding protein HU 1 [Bacillus cereus 95/8201]
 gi|228691981|gb|EEL45723.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-42]
 gi|228731249|gb|EEL82167.1| DNA-binding protein HU 1 [Bacillus cereus AH1271]
 gi|228774228|gb|EEM22637.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228813729|gb|EEM60008.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228825994|gb|EEM71779.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228832226|gb|EEM77807.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228844761|gb|EEM89807.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|229266653|gb|ACQ48290.1| DNA-binding protein HU [Bacillus anthracis str. A0248]
 gi|300376065|gb|ADK04969.1| DNA-binding protein HU [Bacillus cereus biovar anthracis str. CI]
 gi|324326392|gb|ADY21652.1| DNA-binding protein HU [Bacillus thuringiensis serovar finitimus
          YBT-020]
          Length = 90

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 58/90 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K++++   +S+KD++  V ++F+ I  +   G+ +++  F TF V+++ +R G
Sbjct: 1  MNKTELIKNVAQSADISQKDASAAVQSVFDTIATALQSGDKVQLIGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FKA   LK+ + 
Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAVK 90


>gi|33593555|ref|NP_881199.1| integration host factor subunit alpha [Bordetella pertussis Tohama
           I]
 gi|81713302|sp|Q7VVR6|IHFA_BORPE RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|33572911|emb|CAE42847.1| integration host factor alpha-subunit [Bordetella pertussis Tohama
           I]
 gi|332382962|gb|AEE67809.1| integration host factor subunit alpha [Bordetella pertussis CS]
          Length = 113

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 57/93 (61%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+T+++L + + +  GL+++++   V T F EI D+  RG+++K+S F  F V+ K  R
Sbjct: 10  RTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPPR 69

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            GRN +T + + I  RRVV F AS  LK  +  
Sbjct: 70  PGRNPKTGETIPIAARRVVTFHASQKLKSVVEQ 102


>gi|33597181|ref|NP_884824.1| integration host factor subunit alpha [Bordetella parapertussis
           12822]
 gi|33601025|ref|NP_888585.1| integration host factor subunit alpha [Bordetella bronchiseptica
           RB50]
 gi|81713742|sp|Q7W7C5|IHFA_BORPA RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|81714215|sp|Q7WKR3|IHFA_BORBR RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|33573608|emb|CAE37892.1| integration host factor alpha-subunit [Bordetella parapertussis]
 gi|33575460|emb|CAE32538.1| integration host factor alpha-subunit [Bordetella bronchiseptica
           RB50]
          Length = 113

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 57/93 (61%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+T+++L + + +  GL+++++   V T F EI D+  RG+++K+S F  F V+ K  R
Sbjct: 10  RTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPPR 69

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            GRN +T + + I  RRVV F AS  LK  +  
Sbjct: 70  PGRNPKTGETIPIAARRVVTFHASQKLKSVVEQ 102


>gi|323340746|ref|ZP_08080998.1| DNA-binding protein HU [Lactobacillus ruminis ATCC 25644]
 gi|323091869|gb|EFZ34489.1| DNA-binding protein HU [Lactobacillus ruminis ATCC 25644]
          Length = 91

 Score =  140 bits (353), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 53/89 (59%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           ++ L+++++++ GL++KD+T  V  +F  I D   +G+ +++  F  F V+++ +R GR
Sbjct: 3  NKAQLIETVAEKTGLTKKDATVAVDAVFGSIQDFLEKGDKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E++I   +V  FK    LK  + 
Sbjct: 63 NPQTGAEIEIPASKVPAFKPGKALKDAVK 91


>gi|256847159|ref|ZP_05552605.1| integration host factor, alpha subunit [Lactobacillus
          coleohominis 101-4-CHN]
 gi|256715823|gb|EEU30798.1| integration host factor, alpha subunit [Lactobacillus
          coleohominis 101-4-CHN]
          Length = 91

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 53/89 (59%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV +++   GL++KD+T  V  +F+ I  S  +GE +++  F  F V+Q+ +R GR
Sbjct: 3  NKAELVSNVASATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT QE++I   +V  FK    LK  + 
Sbjct: 63 NPQTGQEIQIPASKVPAFKPGKALKDAVK 91


>gi|325571136|ref|ZP_08146708.1| DNA-binding protein HU [Enterococcus casseliflavus ATCC 12755]
 gi|325156221|gb|EGC68407.1| DNA-binding protein HU [Enterococcus casseliflavus ATCC 12755]
          Length = 103

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
            +++L++ ++    L++KD+T  V  +F+ I D+   GE +++  F  F V+ +  R GR
Sbjct: 15  NKAELIEKVAAATDLTKKDATAAVDAVFSTIQDALANGEKVQLIGFGNFEVRSRAERKGR 74

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N QT +E+KI   +V  FK    LK  + 
Sbjct: 75  NPQTGEEIKIPASKVPAFKPGKALKDAVK 103


>gi|29376113|ref|NP_815267.1| DNA-binding protein HU [Enterococcus faecalis V583]
 gi|227518741|ref|ZP_03948790.1| DNA-binding protein HU [Enterococcus faecalis TX0104]
 gi|227553351|ref|ZP_03983400.1| DNA-binding protein HU [Enterococcus faecalis HH22]
 gi|229545834|ref|ZP_04434559.1| DNA-binding protein HU [Enterococcus faecalis TX1322]
 gi|229550026|ref|ZP_04438751.1| DNA-binding protein HU [Enterococcus faecalis ATCC 29200]
 gi|255972807|ref|ZP_05423393.1| DNA-binding protein II [Enterococcus faecalis T1]
 gi|255975863|ref|ZP_05426449.1| DNA-binding protein II [Enterococcus faecalis T2]
 gi|256619053|ref|ZP_05475899.1| DNA-binding protein II [Enterococcus faecalis ATCC 4200]
 gi|256762479|ref|ZP_05503059.1| DNA-binding protein II [Enterococcus faecalis T3]
 gi|256853115|ref|ZP_05558485.1| DNA-binding protein HU [Enterococcus faecalis T8]
 gi|256958970|ref|ZP_05563141.1| DNA-binding protein II [Enterococcus faecalis DS5]
 gi|256961937|ref|ZP_05566108.1| DNA-binding protein II [Enterococcus faecalis Merz96]
 gi|256965135|ref|ZP_05569306.1| DNA-binding protein II [Enterococcus faecalis HIP11704]
 gi|257079001|ref|ZP_05573362.1| DNA-binding protein II [Enterococcus faecalis JH1]
 gi|257082560|ref|ZP_05576921.1| DNA-binding protein II [Enterococcus faecalis E1Sol]
 gi|257085193|ref|ZP_05579554.1| DNA-binding protein II [Enterococcus faecalis Fly1]
 gi|257086754|ref|ZP_05581115.1| DNA-binding protein II [Enterococcus faecalis D6]
 gi|257089875|ref|ZP_05584236.1| DNA-binding protein HU [Enterococcus faecalis CH188]
 gi|257416083|ref|ZP_05593077.1| DNA-binding protein II [Enterococcus faecalis AR01/DG]
 gi|257419286|ref|ZP_05596280.1| DNA-binding protein [Enterococcus faecalis T11]
 gi|257422629|ref|ZP_05599619.1| DNA-binding protein HU [Enterococcus faecalis X98]
 gi|293383005|ref|ZP_06628923.1| DNA-binding protein HU [Enterococcus faecalis R712]
 gi|293389506|ref|ZP_06633963.1| DNA-binding protein HU [Enterococcus faecalis S613]
 gi|294781353|ref|ZP_06746696.1| DNA-binding protein HU [Enterococcus faecalis PC1.1]
 gi|300860723|ref|ZP_07106810.1| DNA-binding protein HU [Enterococcus faecalis TUSoD Ef11]
 gi|307271028|ref|ZP_07552311.1| DNA-binding protein HU [Enterococcus faecalis TX4248]
 gi|307273235|ref|ZP_07554481.1| DNA-binding protein HU [Enterococcus faecalis TX0855]
 gi|307274972|ref|ZP_07556135.1| DNA-binding protein HU [Enterococcus faecalis TX2134]
 gi|307278084|ref|ZP_07559168.1| DNA-binding protein HU [Enterococcus faecalis TX0860]
 gi|307289095|ref|ZP_07569051.1| DNA-binding protein HU [Enterococcus faecalis TX0109]
 gi|307292006|ref|ZP_07571875.1| DNA-binding protein HU [Enterococcus faecalis TX0411]
 gi|312900750|ref|ZP_07760047.1| DNA-binding protein HU [Enterococcus faecalis TX0470]
 gi|312903297|ref|ZP_07762477.1| DNA-binding protein HU [Enterococcus faecalis TX0635]
 gi|312907524|ref|ZP_07766515.1| DNA-binding protein HU [Enterococcus faecalis DAPTO 512]
 gi|312910142|ref|ZP_07768989.1| DNA-binding protein HU [Enterococcus faecalis DAPTO 516]
 gi|312951483|ref|ZP_07770379.1| DNA-binding protein HU [Enterococcus faecalis TX0102]
 gi|29343575|gb|AAO81337.1| DNA-binding protein HU [Enterococcus faecalis V583]
 gi|227073822|gb|EEI11785.1| DNA-binding protein HU [Enterococcus faecalis TX0104]
 gi|227177520|gb|EEI58492.1| DNA-binding protein HU [Enterococcus faecalis HH22]
 gi|229304832|gb|EEN70828.1| DNA-binding protein HU [Enterococcus faecalis ATCC 29200]
 gi|229309033|gb|EEN75020.1| DNA-binding protein HU [Enterococcus faecalis TX1322]
 gi|255963825|gb|EET96301.1| DNA-binding protein II [Enterococcus faecalis T1]
 gi|255968735|gb|EET99357.1| DNA-binding protein II [Enterococcus faecalis T2]
 gi|256598580|gb|EEU17756.1| DNA-binding protein II [Enterococcus faecalis ATCC 4200]
 gi|256683730|gb|EEU23425.1| DNA-binding protein II [Enterococcus faecalis T3]
 gi|256711574|gb|EEU26612.1| DNA-binding protein HU [Enterococcus faecalis T8]
 gi|256949466|gb|EEU66098.1| DNA-binding protein II [Enterococcus faecalis DS5]
 gi|256952433|gb|EEU69065.1| DNA-binding protein II [Enterococcus faecalis Merz96]
 gi|256955631|gb|EEU72263.1| DNA-binding protein II [Enterococcus faecalis HIP11704]
 gi|256987031|gb|EEU74333.1| DNA-binding protein II [Enterococcus faecalis JH1]
 gi|256990590|gb|EEU77892.1| DNA-binding protein II [Enterococcus faecalis E1Sol]
 gi|256993223|gb|EEU80525.1| DNA-binding protein II [Enterococcus faecalis Fly1]
 gi|256994784|gb|EEU82086.1| DNA-binding protein II [Enterococcus faecalis D6]
 gi|256998687|gb|EEU85207.1| DNA-binding protein HU [Enterococcus faecalis CH188]
 gi|257157911|gb|EEU87871.1| DNA-binding protein II [Enterococcus faecalis ARO1/DG]
 gi|257161114|gb|EEU91074.1| DNA-binding protein [Enterococcus faecalis T11]
 gi|257164453|gb|EEU94413.1| DNA-binding protein HU [Enterococcus faecalis X98]
 gi|291079670|gb|EFE17034.1| DNA-binding protein HU [Enterococcus faecalis R712]
 gi|291081123|gb|EFE18086.1| DNA-binding protein HU [Enterococcus faecalis S613]
 gi|294451583|gb|EFG20042.1| DNA-binding protein HU [Enterococcus faecalis PC1.1]
 gi|295112974|emb|CBL31611.1| bacterial nucleoid protein Hbs [Enterococcus sp. 7L76]
 gi|300849762|gb|EFK77512.1| DNA-binding protein HU [Enterococcus faecalis TUSoD Ef11]
 gi|306497004|gb|EFM66552.1| DNA-binding protein HU [Enterococcus faecalis TX0411]
 gi|306499804|gb|EFM69165.1| DNA-binding protein HU [Enterococcus faecalis TX0109]
 gi|306505481|gb|EFM74667.1| DNA-binding protein HU [Enterococcus faecalis TX0860]
 gi|306508420|gb|EFM77527.1| DNA-binding protein HU [Enterococcus faecalis TX2134]
 gi|306510220|gb|EFM79244.1| DNA-binding protein HU [Enterococcus faecalis TX0855]
 gi|306512526|gb|EFM81175.1| DNA-binding protein HU [Enterococcus faecalis TX4248]
 gi|310626552|gb|EFQ09835.1| DNA-binding protein HU [Enterococcus faecalis DAPTO 512]
 gi|310630449|gb|EFQ13732.1| DNA-binding protein HU [Enterococcus faecalis TX0102]
 gi|310633173|gb|EFQ16456.1| DNA-binding protein HU [Enterococcus faecalis TX0635]
 gi|311289415|gb|EFQ67971.1| DNA-binding protein HU [Enterococcus faecalis DAPTO 516]
 gi|311292231|gb|EFQ70787.1| DNA-binding protein HU [Enterococcus faecalis TX0470]
 gi|315027276|gb|EFT39208.1| DNA-binding protein HU [Enterococcus faecalis TX2137]
 gi|315029395|gb|EFT41327.1| DNA-binding protein HU [Enterococcus faecalis TX4000]
 gi|315033959|gb|EFT45891.1| DNA-binding protein HU [Enterococcus faecalis TX0017]
 gi|315036968|gb|EFT48900.1| DNA-binding protein HU [Enterococcus faecalis TX0027]
 gi|315144427|gb|EFT88443.1| DNA-binding protein HU [Enterococcus faecalis TX2141]
 gi|315147254|gb|EFT91270.1| DNA-binding protein HU [Enterococcus faecalis TX4244]
 gi|315150547|gb|EFT94563.1| DNA-binding protein HU [Enterococcus faecalis TX0012]
 gi|315152494|gb|EFT96510.1| DNA-binding protein HU [Enterococcus faecalis TX0031]
 gi|315155772|gb|EFT99788.1| DNA-binding protein HU [Enterococcus faecalis TX0043]
 gi|315158061|gb|EFU02078.1| DNA-binding protein HU [Enterococcus faecalis TX0312]
 gi|315160455|gb|EFU04472.1| DNA-binding protein HU [Enterococcus faecalis TX0645]
 gi|315164004|gb|EFU08021.1| DNA-binding protein HU [Enterococcus faecalis TX1302]
 gi|315169045|gb|EFU13062.1| DNA-binding protein HU [Enterococcus faecalis TX1341]
 gi|315169717|gb|EFU13734.1| DNA-binding protein HU [Enterococcus faecalis TX1342]
 gi|315172322|gb|EFU16339.1| DNA-binding protein HU [Enterococcus faecalis TX1346]
 gi|315575877|gb|EFU88068.1| DNA-binding protein HU [Enterococcus faecalis TX0309B]
 gi|315577717|gb|EFU89908.1| DNA-binding protein HU [Enterococcus faecalis TX0630]
 gi|315580529|gb|EFU92720.1| DNA-binding protein HU [Enterococcus faecalis TX0309A]
 gi|323480713|gb|ADX80152.1| DNA-binding protein HU 1 [Enterococcus faecalis 62]
 gi|327535122|gb|AEA93956.1| DNA-binding protein HU [Enterococcus faecalis OG1RF]
 gi|329571713|gb|EGG53394.1| DNA-binding protein HU-beta [Enterococcus faecalis TX1467]
          Length = 91

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 55/89 (61%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++L+++++   GL++KD+T  V  +F+ I ++  +GE +++  F  F V+++ +R GR
Sbjct: 3  NKAELIENVASSTGLTKKDATAAVDAVFSTIQETLAKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT QE++I   +V  FK    LK  + 
Sbjct: 63 NPQTGQEIQIAASKVPAFKPGKALKDAVK 91


>gi|114321434|ref|YP_743117.1| histone family protein DNA-binding protein [Alkalilimnicola
          ehrlichii MLHE-1]
 gi|114227828|gb|ABI57627.1| histone family protein DNA-binding protein [Alkalilimnicola
          ehrlichii MLHE-1]
          Length = 90

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++++++   +S+  ++R V ++   + ++   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSELIEAVAQSADISKAAASRAVDSMVECVTNALKEGDQVTLVGFGTFQVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I   +V  FKA   LK  + 
Sbjct: 61 RNPRTGETINIAASKVPSFKAGKALKDAVN 90


>gi|229085283|ref|ZP_04217525.1| DNA-binding protein HU [Bacillus cereus Rock3-44]
 gi|228698002|gb|EEL50745.1| DNA-binding protein HU [Bacillus cereus Rock3-44]
          Length = 90

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 59/90 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K++++   +S+KD++  V ++F+ I ++   G+ +++  F TF V+++ +R G
Sbjct: 1  MNKTELIKNVAQTADISQKDASVAVQSVFDAITNALQTGDKVQLIGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FKA   LK+ + 
Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAVK 90


>gi|257867662|ref|ZP_05647315.1| DNA binding protein HU [Enterococcus casseliflavus EC30]
 gi|257869557|ref|ZP_05649210.1| DNA binding protein HU [Enterococcus gallinarum EG2]
 gi|257873990|ref|ZP_05653643.1| DNA binding protein HU [Enterococcus casseliflavus EC10]
 gi|257876569|ref|ZP_05656222.1| DNA binding protein HU [Enterococcus casseliflavus EC20]
 gi|257801745|gb|EEV30648.1| DNA binding protein HU [Enterococcus casseliflavus EC30]
 gi|257803721|gb|EEV32543.1| DNA binding protein HU [Enterococcus gallinarum EG2]
 gi|257808154|gb|EEV36976.1| DNA binding protein HU [Enterococcus casseliflavus EC10]
 gi|257810735|gb|EEV39555.1| DNA binding protein HU [Enterococcus casseliflavus EC20]
          Length = 91

 Score =  140 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++L++ ++    L++KD+T  V  +F+ I D+   GE +++  F  F V+ +  R GR
Sbjct: 3  NKAELIEKVAAATDLTKKDATAAVDAVFSTIQDALANGEKVQLIGFGNFEVRSRAERKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+KI   +V  FK    LK  + 
Sbjct: 63 NPQTGEEIKIPASKVPAFKPGKALKDAVK 91


>gi|322381812|ref|ZP_08055766.1| non-specific DNA-binding protein Hbsu/signal recognition
          particle-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
 gi|321154200|gb|EFX46522.1| non-specific DNA-binding protein Hbsu/signal recognition
          particle-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
          Length = 90

 Score =  140 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+  +++   LS+KD+T+ V  +F  I ++   G+ +++  F  F V+++ +R G
Sbjct: 1  MNKSDLIAKVAEASELSKKDATKAVDAVFEAIAEALKEGDKVQLVGFGNFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FK    LK+ I 
Sbjct: 61 RNPQTGEEIEIAASKVPAFKPGKALKEGIQ 90


>gi|293604706|ref|ZP_06687106.1| integration host factor subunit alpha [Achromobacter piechaudii
           ATCC 43553]
 gi|292816875|gb|EFF75956.1| integration host factor subunit alpha [Achromobacter piechaudii
           ATCC 43553]
          Length = 113

 Score =  140 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 58/103 (56%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+T+++L + + +  GL+++++   V T F EI D+  RG+++K+S F  F V+ K  R
Sbjct: 11  RTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPPR 70

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
            GRN +T + + I  RRVV F AS  LK  +           +
Sbjct: 71  PGRNPKTGETIPIAARRVVTFHASQKLKSVVEQATPAAPDAAE 113


>gi|227529195|ref|ZP_03959244.1| DNA-binding protein HU [Lactobacillus vaginalis ATCC 49540]
 gi|227350920|gb|EEJ41211.1| DNA-binding protein HU [Lactobacillus vaginalis ATCC 49540]
          Length = 91

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 53/89 (59%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV +++   GL++KD+T  V  +F+ I  S  +GE +++  F  F V+Q+ +R GR
Sbjct: 3  NKAELVSNVATATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT QE++I   +V  FK    LK  + 
Sbjct: 63 NPQTGQEIQIPASKVPAFKPGKALKDAVK 91


>gi|332971724|gb|EGK10672.1| DNA-binding protein HU [Desmospora sp. 8437]
          Length = 90

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ +++  G ++K+S   V  + + I ++   GE + +  F  F V+++ +R G
Sbjct: 1  MNKTELIERVAESTGKTKKESAHLVEAVLDSIAEALRNGEKVSLIGFGNFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++I   +V  FK    LK+ + 
Sbjct: 61 RNPQTGEPIEIGASKVPAFKPGKQLKEAVN 90


>gi|222528663|ref|YP_002572545.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          bescii DSM 6725]
 gi|222455510|gb|ACM59772.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          bescii DSM 6725]
          Length = 91

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 59/91 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++ GL++KD+ + +    + + ++  +GE +++  F +F V+++  RVG
Sbjct: 1  MNKTELISAMAEKSGLTKKDAEKALNAFVDAVTEALSKGEKVQLVGFGSFEVRERAERVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E+KI   +V VFKA  +LK  +  
Sbjct: 61 RNPQTQEEIKIPATKVPVFKAGKMLKDAVAK 91


>gi|220934118|ref|YP_002513017.1| histone family protein DNA-binding protein [Thioalkalivibrio sp.
          HL-EbGR7]
 gi|219995428|gb|ACL72030.1| histone family protein DNA-binding protein [Thioalkalivibrio sp.
          HL-EbGR7]
          Length = 90

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    L +  + R V  + + I  +   G+ + I  F TF V+++ +R G
Sbjct: 1  MNKSELIDAIAASSDLPKAQAARAVDAMIDVISGALKNGDQVTIVGFGTFLVREREARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + ++I   ++  FKA   LK  + 
Sbjct: 61 RNPRTGETIQIAASKMPSFKAGKGLKDAVN 90


>gi|15615918|ref|NP_244222.1| non-specific DNA-binding protein II (HB) (HU) [Bacillus
          halodurans C-125]
 gi|14194648|sp|Q9K7K5|DBH2_BACHD RecName: Full=DNA-binding protein HU-1
 gi|10175979|dbj|BAB07075.1| non-specific DNA-binding protein II (HB) (HU) [Bacillus
          halodurans C-125]
          Length = 90

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  +++   +S+KD+   V T+F+ I +S  +G+++++  F  F V+++ +R G
Sbjct: 1  MNKTELIHQVAERTQMSKKDAGEVVNTVFDVIAESLAQGDSVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +   FKA   LK  + 
Sbjct: 61 RNPQTGEEIDIAATKTPAFKAGKQLKDAVK 90


>gi|149180539|ref|ZP_01859043.1| non-specific DNA-binding protein [Bacillus sp. SG-1]
 gi|148851692|gb|EDL65838.1| non-specific DNA-binding protein [Bacillus sp. SG-1]
          Length = 91

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ ++++   LS+KD+   V  +   I D+  +GE +++  F  F V+++ +R G
Sbjct: 1  MNKTDLINAVAESAELSKKDAENAVKAVLQNIEDTLAKGEKVQLIGFGNFEVRERSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +   FK    LK  + 
Sbjct: 61 RNPQTGEEMEIPATKQPAFKPGKALKDSVN 90


>gi|119897376|ref|YP_932589.1| integration host factor subunit alpha [Azoarcus sp. BH72]
 gi|189044692|sp|A1K4E7|IHFA_AZOSB RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|119669789|emb|CAL93702.1| integration host factor alpha-subunit [Azoarcus sp. BH72]
          Length = 103

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 57/103 (55%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           M+ T+T+++L   + +  GL+++++   V   F EI  +  RG+++K+S F  F ++ K 
Sbjct: 1   MNVTLTKAELADLLFERVGLNKREAKDMVEGFFEEIRTALERGDSVKLSGFGNFQLRDKP 60

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
            R GRN +T +E+ I  RRVV F AS  LK  +       K  
Sbjct: 61  QRPGRNPKTGEEIPITARRVVTFHASQKLKAAVEQLSDASKQP 103


>gi|332971824|gb|EGK10771.1| DNA-binding protein HU-beta [Psychrobacter sp. 1501(2011)]
          Length = 90

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV SI+++ GL++  +   +  +   + ++    + I +  F TF VK + +R G
Sbjct: 1  MNKSELVDSIAEKSGLNKTQAADALNAMMESVGEALENNDTISLVGFGTFSVKDRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  E++I   RV  FKA   LK R+ 
Sbjct: 61 RNPKTGDELQIPASRVPHFKAGKGLKDRLN 90


>gi|292490922|ref|YP_003526361.1| histone family protein DNA-binding protein [Nitrosococcus
          halophilus Nc4]
 gi|291579517|gb|ADE13974.1| histone family protein DNA-binding protein [Nitrosococcus
          halophilus Nc4]
          Length = 90

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++S+++   L++  + R V ++   + D+  RG+ + I  F TF V+ + +R G
Sbjct: 1  MNKSELIESVAESGDLTKAAAARAVDSVIEAVTDALRRGDQVTIVGFGTFSVRDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI   ++  FKA   LK  + 
Sbjct: 61 RNPQTGEEIKIKASKIPSFKAGKALKDAVN 90


>gi|28378532|ref|NP_785424.1| DNA-binding protein II [Lactobacillus plantarum WCFS1]
 gi|254556746|ref|YP_003063163.1| DNA-binding protein II [Lactobacillus plantarum JDM1]
 gi|300767478|ref|ZP_07077390.1| DNA-binding protein HU [Lactobacillus plantarum subsp. plantarum
          ATCC 14917]
 gi|308180690|ref|YP_003924818.1| non-specific DNA-binding protein HBsu [Lactobacillus plantarum
          subsp. plantarum ST-III]
 gi|28271368|emb|CAD64273.1| DNA-binding protein II [Lactobacillus plantarum WCFS1]
 gi|254045673|gb|ACT62466.1| DNA-binding protein II [Lactobacillus plantarum JDM1]
 gi|300495297|gb|EFK30453.1| DNA-binding protein HU [Lactobacillus plantarum subsp. plantarum
          ATCC 14917]
 gi|308046181|gb|ADN98724.1| non-specific DNA-binding protein HBsu [Lactobacillus plantarum
          subsp. plantarum ST-III]
          Length = 91

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 51/89 (57%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV +++    L++KD+T  V  +F  I D+  +GE +++  F  F V+++ +R GR
Sbjct: 3  NKAELVNNVAAATNLTKKDATAAVDAVFASIQDTLAKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E++I   +V  FK    LK  + 
Sbjct: 63 NPQTGDEIQIPASKVPAFKPGKALKDAVK 91


>gi|83748303|ref|ZP_00945328.1| Integration host factor alpha-subunit [Ralstonia solanacearum
           UW551]
 gi|83725035|gb|EAP72188.1| Integration host factor alpha-subunit [Ralstonia solanacearum
           UW551]
          Length = 175

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 57/96 (59%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            T+T+++L + + ++ GL++++S   V   F+ I ++  +G+++K+S F  F ++ K  R
Sbjct: 73  PTLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 132

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            GRN +T + + I  RRVV F AS  LK  +   + 
Sbjct: 133 PGRNPKTGEIIPITARRVVTFHASQKLKALVEQRVE 168


>gi|147676456|ref|YP_001210671.1| nucleoid DNA-binding protein [Pelotomaculum thermopropionicum SI]
 gi|146272553|dbj|BAF58302.1| bacterial nucleoid DNA-binding protein [Pelotomaculum
          thermopropionicum SI]
          Length = 91

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 58/91 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  L++KD+ + ++   + + ++  RG+ +++  F TF ++++ +R G
Sbjct: 1  MNKAELISNVAEKTELTKKDAEKAISAFLDTVGEALARGDKVQLVGFGTFEIRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E+ I   RV VFKA   L+  ++ 
Sbjct: 61 RNPQTGEEINIAAARVPVFKAGKALRDAVLK 91


>gi|90410785|ref|ZP_01218800.1| putative bacterial nucleoid DNA-binding protein [Photobacterium
          profundum 3TCK]
 gi|90328416|gb|EAS44714.1| putative bacterial nucleoid DNA-binding protein [Photobacterium
          profundum 3TCK]
          Length = 91

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV  I++   +S+  + R +    + +  +   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKTQLVDKIAESADISKASAGRALDAFIDAVSGTLKDGDQVALVGFGTFSVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FK    LK  + 
Sbjct: 61 RNPQTGEEIQIAAAKVPGFKPGKALKDSVN 90


>gi|88810610|ref|ZP_01125867.1| DNA-binding protein HU-beta, NS1 [Nitrococcus mobilis Nb-231]
 gi|88792240|gb|EAR23350.1| DNA-binding protein HU-beta, NS1 [Nitrococcus mobilis Nb-231]
          Length = 90

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ +++   LS+  ++R V      + D+   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSELIEVVAQSADLSKAAASRAVDAFVTSVTDALKEGDQVTLVGFGTFAVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I   +   FKA   LK  + 
Sbjct: 61 RNPRTGESITIPASKTPGFKAGKALKDAVN 90


>gi|134095000|ref|YP_001100075.1| integration host factor subunit alpha [Herminiimonas
           arsenicoxydans]
 gi|133738903|emb|CAL61950.1| Integration host factor subunit alpha (IHF-alpha) [Herminiimonas
           arsenicoxydans]
          Length = 151

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 59/92 (64%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            T+T+++L + + ++ GL+++++   V T F+EI ++  RGEA+K+S F  F ++ K  R
Sbjct: 49  PTLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQR 108

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            GRN +T +E+ I  RRVV F AS  LK  + 
Sbjct: 109 PGRNPKTGEEIPITARRVVTFHASQKLKSMVE 140


>gi|260893900|ref|YP_003239997.1| histone family protein DNA-binding protein [Ammonifex degensii
          KC4]
 gi|260866041|gb|ACX53147.1| histone family protein DNA-binding protein [Ammonifex degensii
          KC4]
          Length = 95

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 58/89 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDLV  ++++  +++KD+ + VT +F+ I ++  RG+ +++  F TF V+++ +R G
Sbjct: 1  MNKSDLVAQVAEKAEMTKKDAEKAVTAVFDAIAEALARGDKVQLVGFGTFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E++I   +V VF+A   LK  +
Sbjct: 61 RNPQTGAEIEIAACKVPVFRAGKALKAAV 89


>gi|253998435|ref|YP_003050498.1| integration host factor subunit alpha [Methylovorus sp. SIP3-4]
 gi|313200510|ref|YP_004039168.1| integration host factor subunit alpha [Methylovorus sp. MP688]
 gi|253985114|gb|ACT49971.1| integration host factor, alpha subunit [Methylovorus sp. SIP3-4]
 gi|312439826|gb|ADQ83932.1| integration host factor, alpha subunit [Methylovorus sp. MP688]
          Length = 100

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 59/99 (59%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T++DL   + ++ GL+++++   V   F EI  +   G+++K+S F  F ++QK  R 
Sbjct: 2   TLTKADLADLLFEQVGLNKREAKDMVEAFFEEIRTALESGDSVKLSGFGNFELRQKSERP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           GRN +T +E+ I  RRVV F AS  LK ++ +   G + 
Sbjct: 62  GRNPKTGEEIPITARRVVTFHASQKLKLKVEEAYAGDRA 100


>gi|148653424|ref|YP_001280517.1| histone family protein DNA-binding protein [Psychrobacter sp.
          PRwf-1]
 gi|148572508|gb|ABQ94567.1| histone family protein DNA-binding protein [Psychrobacter sp.
          PRwf-1]
          Length = 90

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV SI+++ GL++  +   +  +   + ++    + I +  F TF VK++ +R G
Sbjct: 1  MNKSELVDSIAEKSGLNKTQAADALNAMMESVGEALENNDTISLVGFGTFSVKERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  E++I   RV  FKA   LK R+ 
Sbjct: 61 RNPKTGDELQIPASRVPHFKAGKGLKDRLN 90


>gi|288553957|ref|YP_003425892.1| DNA-binding protein HU [Bacillus pseudofirmus OF4]
 gi|288545117|gb|ADC49000.1| DNA-binding protein HU, Hbsu-like protein [Bacillus pseudofirmus
          OF4]
          Length = 90

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  +++   LS+KD+   V  +F+ I ++  +GE +++  F  F V+++ +R G
Sbjct: 1  MNKTELINEVAERTQLSKKDAGNAVNEVFDVISETMSKGETVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +   FKA   LK  + 
Sbjct: 61 RNPQTGEEIDIPATKTPAFKAGKQLKDAVK 90


>gi|163856951|ref|YP_001631249.1| integration host factor subunit alpha [Bordetella petrii DSM 12804]
 gi|163260679|emb|CAP42981.1| integration host factor alpha-subunit [Bordetella petrii]
          Length = 107

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 58/102 (56%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+T+++L + + +  GL+++++   V T F EI D+  RG+++K+S F  F V+ K  R
Sbjct: 6   RTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRNKPPR 65

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
            GRN +T + + I  RRVV F AS  LK  +          +
Sbjct: 66  PGRNPKTGETIPIAARRVVTFHASQKLKSVVEQADSANNSGE 107


>gi|228988924|ref|ZP_04148973.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228770838|gb|EEM19354.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
          Length = 90

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 55/90 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K +++   L++KD++     + + I ++ + GE +++  F TF V+++ +R G
Sbjct: 1  MNKTELIKQVAENTELTQKDASAATQAVLDTITEALMNGEKVQLIGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKAAVK 90


>gi|148543996|ref|YP_001271366.1| nucleoid protein Hbs [Lactobacillus reuteri DSM 20016]
 gi|184153390|ref|YP_001841731.1| DNA-binding protein HU [Lactobacillus reuteri JCM 1112]
 gi|194467924|ref|ZP_03073910.1| histone family protein DNA-binding protein [Lactobacillus reuteri
          100-23]
 gi|227364909|ref|ZP_03848954.1| DNA-binding protein HU [Lactobacillus reuteri MM2-3]
 gi|227543423|ref|ZP_03973472.1| DNA-binding protein HU [Lactobacillus reuteri CF48-3A]
 gi|300910089|ref|ZP_07127549.1| DNA-binding protein HU [Lactobacillus reuteri SD2112]
 gi|325682466|ref|ZP_08161983.1| DNA-binding protein HU [Lactobacillus reuteri MM4-1A]
 gi|133930435|gb|ABO43789.1| DNA-binding protein [Lactobacillus reuteri]
 gi|148531030|gb|ABQ83029.1| bacterial nucleoid protein Hbs [Lactobacillus reuteri DSM 20016]
 gi|183224734|dbj|BAG25251.1| DNA-binding protein HU [Lactobacillus reuteri JCM 1112]
 gi|194452777|gb|EDX41675.1| histone family protein DNA-binding protein [Lactobacillus reuteri
          100-23]
 gi|227070056|gb|EEI08434.1| DNA-binding protein HU [Lactobacillus reuteri MM2-3]
 gi|227186602|gb|EEI66673.1| DNA-binding protein HU [Lactobacillus reuteri CF48-3A]
 gi|300892737|gb|EFK86097.1| DNA-binding protein HU [Lactobacillus reuteri SD2112]
 gi|324978305|gb|EGC15255.1| DNA-binding protein HU [Lactobacillus reuteri MM4-1A]
          Length = 91

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 52/89 (58%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV +++   GL++KD+T  V  +F+ I  S  +GE +++  F  F V+Q+ +R GR
Sbjct: 3  NKAELVSNVATATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+ I   +V  FK    LK  + 
Sbjct: 63 NPQTGEEINIPASKVPAFKPGKALKDAVK 91


>gi|269138351|ref|YP_003295051.1| transcriptional regulator HU subunit beta [Edwardsiella tarda
          EIB202]
 gi|267984011|gb|ACY83840.1| transcriptional regulator HU subunit beta [Edwardsiella tarda
          EIB202]
 gi|304558383|gb|ADM41047.1| DNA-binding protein HU-beta [Edwardsiella tarda FL6-60]
          Length = 90

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I++   +S+  + R +      + +S   G+A+ +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAEGADISKAAAGRALDAFIASVTESLQEGDAVALVGFGTFDVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT QE+ I   +V  F+A   LK  + 
Sbjct: 61 RNPQTGQEIDIPAAKVPGFRAGKALKDAVN 90


>gi|134104523|pdb|2IIF|A Chain A, Single Chain Integration Host Factor Mutant Protein
           (Scihf2- K45ae) In Complex With Dna
          Length = 204

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 55/98 (56%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++++ + +  + GLS++D+   V   F EI  +   GE +++S F  F ++ K  R G
Sbjct: 47  LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVELSGFGNFDLRDKNQRPG 106

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           RN +T +++ I  RRVV F+    LK R+ +   G + 
Sbjct: 107 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAGGGERI 144



 Score = 84.6 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 43  GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GE I+I  F +F +  +  R GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 141 GERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 192


>gi|315641242|ref|ZP_07896319.1| DNA-binding protein HU [Enterococcus italicus DSM 15952]
 gi|315483009|gb|EFU73528.1| DNA-binding protein HU [Enterococcus italicus DSM 15952]
          Length = 91

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 50/89 (56%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++L++ ++    L++KD+T  V  +F+ I ++   GE +++  F  F V+ +  R GR
Sbjct: 3  NKAELIEKVAAATDLTKKDATLAVDAVFSSIQEALANGEKVQLIGFGNFEVRTRAERKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+KI   +V  FK    LK  + 
Sbjct: 63 NPQTGEEIKIPASKVPAFKPGKALKDAVK 91


>gi|300703884|ref|YP_003745486.1| integration host factor (ihf) subunit alpha [Ralstonia solanacearum
           CFBP2957]
 gi|299071547|emb|CBJ42871.1| integration host factor (IHF), alpha subunit [Ralstonia
           solanacearum CFBP2957]
          Length = 140

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 57/96 (59%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            T+T+++L + + ++ GL++++S   V   F+ I ++  +G+++K+S F  F ++ K  R
Sbjct: 38  PTLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 97

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            GRN +T + + I  RRVV F AS  LK  +   + 
Sbjct: 98  PGRNPKTGEIIPITARRVVTFHASQKLKALVEQRVE 133


>gi|296112837|ref|YP_003626775.1| DNA-binding protein HU-beta [Moraxella catarrhalis RH4]
 gi|295920531|gb|ADG60882.1| DNA-binding protein HU-beta [Moraxella catarrhalis RH4]
 gi|326561078|gb|EGE11443.1| DNA-binding protein HU-beta [Moraxella catarrhalis 7169]
 gi|326561504|gb|EGE11848.1| DNA-binding protein HU-beta [Moraxella catarrhalis 46P47B1]
 gi|326565372|gb|EGE15550.1| DNA-binding protein HU-beta [Moraxella catarrhalis 12P80B1]
 gi|326566699|gb|EGE16838.1| DNA-binding protein HU-beta [Moraxella catarrhalis 103P14B1]
 gi|326567537|gb|EGE17652.1| DNA-binding protein HU-beta [Moraxella catarrhalis BC1]
 gi|326569385|gb|EGE19445.1| DNA-binding protein HU-beta [Moraxella catarrhalis BC8]
 gi|326571416|gb|EGE21431.1| DNA-binding protein HU-beta [Moraxella catarrhalis BC7]
 gi|326575302|gb|EGE25230.1| DNA-binding protein HU-beta [Moraxella catarrhalis CO72]
 gi|326576613|gb|EGE26520.1| DNA-binding protein HU-beta [Moraxella catarrhalis 101P30B1]
 gi|326577520|gb|EGE27400.1| DNA-binding protein HU-beta [Moraxella catarrhalis O35E]
          Length = 90

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV SI++  GL+++ + + V      +  +  RG+ + +  F TF VK++ +R+G
Sbjct: 1  MNKSELVDSIAQSAGLTKEQAAKAVNAFTESVQGALQRGDDVVLVGFGTFSVKERAARMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + ++I   +V  FKA  +LK+ + 
Sbjct: 61 RNPKTGEAIQIAASKVPSFKAGKVLKESVN 90


>gi|184155358|ref|YP_001843698.1| DNA-binding protein [Lactobacillus fermentum IFO 3956]
 gi|227515172|ref|ZP_03945221.1| DNA-binding protein HU [Lactobacillus fermentum ATCC 14931]
 gi|260662129|ref|ZP_05863025.1| DNA-binding protein [Lactobacillus fermentum 28-3-CHN]
 gi|183226702|dbj|BAG27218.1| DNA-binding protein [Lactobacillus fermentum IFO 3956]
 gi|227086504|gb|EEI21816.1| DNA-binding protein HU [Lactobacillus fermentum ATCC 14931]
 gi|260553512|gb|EEX26404.1| DNA-binding protein [Lactobacillus fermentum 28-3-CHN]
          Length = 91

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 53/89 (59%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV +++   GL++KD+T  V  +F+ I  S  +GE +++  F  F V+++ +R GR
Sbjct: 3  NKAELVTNVATATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT QE++I   +V  FK    LK  + 
Sbjct: 63 NPQTGQEIQIPASKVPAFKPGKALKDAVK 91


>gi|54309795|ref|YP_130815.1| putative nucleoid DNA-binding protein [Photobacterium profundum
           SS9]
 gi|46914233|emb|CAG21013.1| putative bacterial nucleoid DNA-binding protein [Photobacterium
           profundum SS9]
          Length = 103

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 46/90 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV  I++   +S+  + R +    + +  +   G+ + +  F TF V+ + +R G
Sbjct: 13  VNKTQLVDKIAESADISKASAGRALDAFIDAVSGTLKDGDQVALVGFGTFSVRDRAARTG 72

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN QT +E++I   +V  FK    LK  + 
Sbjct: 73  RNPQTGEEIQIAAAKVPGFKPGKALKDSVN 102


>gi|304311293|ref|YP_003810891.1| Histone-like bacterial dna-binding protein [gamma proteobacterium
          HdN1]
 gi|301797026|emb|CBL45239.1| Histone-like bacterial dna-binding protein [gamma proteobacterium
          HdN1]
          Length = 91

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  ++R +  +   + D+  + E + +  F TF VK + +R G
Sbjct: 1  MNKSELIDAIAASADIPKAQASRALDAVITSVTDALKKDEQVALVGFGTFSVKDRAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + + I   ++  FK    LK  +  
Sbjct: 61 RNPQTGETIDIPAAKIPSFKPGKALKDAVNG 91


>gi|134104519|pdb|2IIE|A Chain A, Single Chain Integration Host Factor Protein (Scihf2) In
           Complex With Dna
          Length = 204

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 55/98 (56%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R G
Sbjct: 47  LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 106

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           RN +T +++ I  RRVV F+    LK R+ +   G + 
Sbjct: 107 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAGGGERI 144



 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 43  GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GE I+I  F +F +  +  R GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 141 GERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 192


>gi|78045062|ref|YP_359077.1| DNA-binding protein HU [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997177|gb|ABB16076.1| DNA-binding protein HU [Carboxydothermus hydrogenoformans Z-2901]
          Length = 89

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 58/89 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  I+++  +++KD+ + +  +   I ++  +GE +++  F TF V+++ +R G
Sbjct: 1  MNKAELVSVIAEKAEMTKKDAEKALNAVLAAIEEALKKGEKVQLVGFGTFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT QE++I   +V VFK   +LK++I
Sbjct: 61 RNPQTGQEIEIPASKVPVFKPGKLLKEKI 89


>gi|291614191|ref|YP_003524348.1| integration host factor, subunit alpha [Sideroxydans
          lithotrophicus ES-1]
 gi|291584303|gb|ADE11961.1| integration host factor, alpha subunit [Sideroxydans
          lithotrophicus ES-1]
          Length = 102

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 55/96 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+++L   + ++ GL+++++   V   F EI     +GE++K+S F  F ++ K  R 
Sbjct: 3  TLTKAELADLLFEKVGLNKREAKDMVEAFFEEIRMQLEQGESVKLSGFGNFQLRDKPQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T +E+ I  RRVV F  S  LK  +  +  G
Sbjct: 63 GRNPKTGEEIPITARRVVTFHPSQKLKSMVEKNYHG 98


>gi|104774450|ref|YP_619430.1| histone-like DNA-binding protein [Lactobacillus delbrueckii
          subsp. bulgaricus ATCC 11842]
 gi|116514550|ref|YP_813456.1| nucleoid DNA-binding protein [Lactobacillus delbrueckii subsp.
          bulgaricus ATCC BAA-365]
 gi|300812638|ref|ZP_07093050.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp.
          bulgaricus PB2003/044-T3-4]
 gi|21633218|gb|AAM22481.1| HlbB [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103423531|emb|CAI98435.1| Histone-like DNA-binding protein [Lactobacillus delbrueckii
          subsp. bulgaricus ATCC 11842]
 gi|116093865|gb|ABJ59018.1| bacterial nucleoid protein Hbs [Lactobacillus delbrueckii subsp.
          bulgaricus ATCC BAA-365]
 gi|300496368|gb|EFK31478.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp.
          bulgaricus PB2003/044-T3-4]
 gi|325126261|gb|ADY85591.1| HlbB protein [Lactobacillus delbrueckii subsp. bulgaricus 2038]
 gi|325685672|gb|EGD27753.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp. lactis
          DSM 20072]
          Length = 90

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  +S++   S+K+S + V  LF  I ++  +GE +++  F TF V+++ +R G
Sbjct: 1  MNKTELVSVVSEKTEFSKKESAQIVDALFASIEEALAKGEKVQLIGFGTFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I   +V  FK    LK  + 
Sbjct: 61 RNPQTGAEIEIPASKVPAFKPGKALKDAVK 90


>gi|332686553|ref|YP_004456327.1| DNA-binding protein HBsu [Melissococcus plutonius ATCC 35311]
 gi|332370562|dbj|BAK21518.1| DNA-binding protein HBsu [Melissococcus plutonius ATCC 35311]
          Length = 91

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 53/89 (59%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++L+ +++   GLS+KD+T  V  +F  I +S  +GE +++  F  F V+++ +R GR
Sbjct: 3  NKAELIDNVASTTGLSKKDATSAVDAVFATIQESLAKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E++I+  +V  FK    LK  + 
Sbjct: 63 NPQTGDEIQIEASKVPAFKPGKALKDAVK 91


>gi|299066592|emb|CBJ37782.1| integration host factor (IHF), alpha subunit [Ralstonia
           solanacearum CMR15]
          Length = 139

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 58/96 (60%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            T+T+++L + + ++ GL++++S   V   F+ I ++  +G+++K+S F  F ++ K  R
Sbjct: 37  PTLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 96

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            GRN +T + + I  RRVV F AS  LK  + + + 
Sbjct: 97  PGRNPKTGEIIPITARRVVTFHASQKLKALVEERVE 132


>gi|310642570|ref|YP_003947328.1| DNA-binding protein hu-alpha (histone-like protein)
          [Paenibacillus polymyxa SC2]
 gi|309247520|gb|ADO57087.1| DNA-binding protein HU-alpha (Histone-like protein)
          [Paenibacillus polymyxa SC2]
          Length = 91

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  +S+   LS+KD T+ +  +F  I  +   G+ +++  F  F V+++ +R G
Sbjct: 2  LNKTDLINQVSESTELSKKDVTKAIDAVFEAIAGALQNGDKVQLVGFGNFEVRERSARKG 61

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   ++  FK    LK  I 
Sbjct: 62 RNPQTGEEIEIPASKIPAFKPGKALKDGIK 91


>gi|116333426|ref|YP_794953.1| nucleoid DNA-binding protein [Lactobacillus brevis ATCC 367]
 gi|116098773|gb|ABJ63922.1| bacterial nucleoid protein Hbs [Lactobacillus brevis ATCC 367]
          Length = 91

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 51/89 (57%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           ++ LV  ++   GL++KD+T  V  +F+ +  +  +GE +++  F  F V+++ +R GR
Sbjct: 3  NKAQLVSDVATATGLTKKDATAAVDAVFDSVQATLAKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT QE++I   +V  FK    LK  + 
Sbjct: 63 NPQTGQEIQIPASKVPAFKPGKALKDAVK 91


>gi|118586877|ref|ZP_01544311.1| histone-like DNA-binding protein [Oenococcus oeni ATCC BAA-1163]
 gi|118432709|gb|EAV39441.1| histone-like DNA-binding protein [Oenococcus oeni ATCC BAA-1163]
          Length = 107

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 49/89 (55%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
            + +LV S++K   L++KD+T  V  +F+ I     +GE +++  F  F V+ + +R GR
Sbjct: 19  NKQELVDSVAKATDLTKKDATAAVDAVFDSIASYLKKGEKVQLIGFGNFEVRDRAARTGR 78

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N QT  E+KI   +V  FK    LK  + 
Sbjct: 79  NPQTGAEIKIPASKVPAFKPGKALKDTVK 107


>gi|91776349|ref|YP_546105.1| integration host factor subunit alpha [Methylobacillus flagellatus
           KT]
 gi|123254152|sp|Q1GZS3|IHFA_METFK RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|91710336|gb|ABE50264.1| integration host factor, alpha subunit [Methylobacillus flagellatus
           KT]
          Length = 100

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 58/99 (58%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T++DL   + ++ GL+++++   V   F EI  +   G+++K+S F  F ++QK  R 
Sbjct: 2   TLTKADLADLLFEQVGLNKREAKDMVEAFFEEIRMALEAGDSVKLSGFGNFELRQKSERP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           GRN +T +E+ I  RRVV F AS  LK ++ +   G   
Sbjct: 62  GRNPKTGEEIPITARRVVTFHASQKLKSKVEEAYAGAST 100


>gi|228994303|ref|ZP_04154194.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442]
 gi|228765453|gb|EEM14116.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442]
          Length = 93

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 60/92 (65%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K + +++L+KS+++   +S+K+++  V ++F+ I ++   G+ +++  F TF V+++ +R
Sbjct: 2  KKMNKTELIKSVAQTADISQKEASAAVQSVFDTIANALQTGDKVQLIGFGTFEVRERAAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E++I   +V  FKA   LK+ + 
Sbjct: 62 TGRNPQTGEEIQIAAGKVPAFKAGKELKEAVK 93


>gi|257092831|ref|YP_003166472.1| integration host factor subunit alpha [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045355|gb|ACV34543.1| integration host factor, alpha subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 100

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 57/99 (57%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L   + ++ GL+++++   V   F EI ++  RG+ +K+S F  F ++ K  R 
Sbjct: 2   TLTKAELADLLFEKVGLNKREAKDMVEAFFEEIRNALERGDGVKLSGFGNFQLRDKPQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           GRN +T +E+ I  RRVV F AS  LK  +     G + 
Sbjct: 62  GRNPKTGEEIPITARRVVTFHASQKLKGEVEHAYDGSES 100


>gi|71066029|ref|YP_264756.1| putative DNA-binding protein HU-beta [Psychrobacter arcticus
          273-4]
 gi|71039014|gb|AAZ19322.1| putative DNA-binding protein HU-beta [Psychrobacter arcticus
          273-4]
          Length = 90

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ SI+++ GL++  +   +  +   + ++   G++I +  F TF VK + +R G
Sbjct: 1  MNKSELIDSIAEKSGLNKTQAGDALNAVMESVGEALEAGDSISLVGFGTFSVKDRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E+ I   +   FKA   LK+R+ 
Sbjct: 61 RNPKTGEELSIPASKAPSFKAGKNLKERLN 90


>gi|237809330|ref|YP_002893770.1| histone family protein DNA-binding protein [Tolumonas auensis DSM
          9187]
 gi|237501591|gb|ACQ94184.1| histone family protein DNA-binding protein [Tolumonas auensis DSM
          9187]
          Length = 91

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+ +  +S+  +   +  +   I  S   G+ +++  F TF V  + SR G
Sbjct: 1  MNKTELVDAIAAKADMSKAQAKVALEQILETITQSLKEGDPVQLVGFGTFKVNHRASRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT QE+ I    V  F A   LK  +  
Sbjct: 61 RNPQTGQEITIAASNVPTFVAGKALKDAVNG 91


>gi|207742952|ref|YP_002259344.1| integration host factor alpha-subunit (ihf-alpha) protein
           [Ralstonia solanacearum IPO1609]
 gi|206594347|emb|CAQ61274.1| probable integration host factor alpha-subunit (ihf-alpha) protein
           [Ralstonia solanacearum IPO1609]
          Length = 140

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 57/96 (59%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            T+T+++L + + ++ GL++++S   V   F+ I ++  +G+++K+S F  F ++ K  R
Sbjct: 38  PTLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 97

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            GRN +T + + I  RRVV F AS  LK  +   + 
Sbjct: 98  PGRNPKTGEIIPITARRVVTFHASQKLKALVEQRVE 133


>gi|237747673|ref|ZP_04578153.1| integration host factor subunit alpha [Oxalobacter formigenes
           OXCC13]
 gi|229379035|gb|EEO29126.1| integration host factor subunit alpha [Oxalobacter formigenes
           OXCC13]
          Length = 129

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 36/97 (37%), Positives = 60/97 (61%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + + ++ GL+++++   V T F EIC +  RGEA+K+S F  F ++ K  
Sbjct: 30  TSTLTKAELTELLYEQVGLNKREAKEMVETFFEEICGALERGEAVKLSGFGNFQLRDKPQ 89

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           R GRN +T +E+ I  RRVV F AS  LK  +    +
Sbjct: 90  RPGRNPRTGEEIPITARRVVTFHASQKLKSMVESAEK 126


>gi|172057810|ref|YP_001814270.1| histone family protein DNA-binding protein [Exiguobacterium
          sibiricum 255-15]
 gi|171990331|gb|ACB61253.1| histone family protein DNA-binding protein [Exiguobacterium
          sibiricum 255-15]
          Length = 90

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 55/90 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++++ ++ GL++KD T+ V + F  I ++   GE +++  F  F V+++ +R G
Sbjct: 1  MNKTELIQAVVEKSGLTKKDVTKVVESTFESITETLQSGEKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T ++++I   +V  FK    LK  + 
Sbjct: 61 RNPRTKEDIEIPASKVPAFKPGKALKDAVK 90


>gi|241663237|ref|YP_002981597.1| integration host factor subunit alpha [Ralstonia pickettii 12D]
 gi|240865264|gb|ACS62925.1| integration host factor, alpha subunit [Ralstonia pickettii 12D]
          Length = 138

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 58/96 (60%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            T+T+++L + + ++ GL++++S   V   F+ I ++  +G+++K+S F  F ++ K  R
Sbjct: 36  PTLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 95

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            GRN +T + + I  RRVV F AS  LK  + + + 
Sbjct: 96  PGRNPKTGEIIPITARRVVTFHASQKLKALVEERVE 131


>gi|187929051|ref|YP_001899538.1| integration host factor subunit alpha [Ralstonia pickettii 12J]
 gi|187725941|gb|ACD27106.1| integration host factor, alpha subunit [Ralstonia pickettii 12J]
          Length = 138

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 58/96 (60%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            T+T+++L + + ++ GL++++S   V   F+ I ++  +G+++K+S F  F ++ K  R
Sbjct: 36  PTLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 95

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            GRN +T + + I  RRVV F AS  LK  + + + 
Sbjct: 96  PGRNPKTGEIIPITARRVVTFHASQKLKALVEERVE 131


>gi|85703262|ref|ZP_01034366.1| integration host factor, alpha subunit [Roseovarius sp. 217]
 gi|85672190|gb|EAQ27047.1| integration host factor, alpha subunit [Roseovarius sp. 217]
          Length = 121

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/96 (46%), Positives = 69/96 (71%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR DL +++ +E GLSR D+ + V ++ + + D+ VRGE +KISSF TF V+ K +R
Sbjct: 25  KTLTRMDLSEAVFREVGLSRNDAAQLVESVLDHMSDALVRGEQVKISSFGTFSVRDKTAR 84

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           VGRN +T +EV I+PRRV+ F+ S ++K R+ D  +
Sbjct: 85  VGRNPKTGEEVPINPRRVLTFRPSHLMKDRVADGTK 120


>gi|304319842|ref|YP_003853485.1| integration host factor subunit alpha [Parvularcula bermudensis
          HTCC2503]
 gi|303298745|gb|ADM08344.1| integration host factor alpha subunit [Parvularcula bermudensis
          HTCC2503]
          Length = 112

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/99 (40%), Positives = 65/99 (65%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+KT TR+DL  ++ +  GLSR++    + ++  +I      GE +K+SSF TF +++K 
Sbjct: 1  MTKTHTRADLCDTVYENVGLSRQECGELIESVLEKIAQHLEEGEQVKLSSFGTFQIREKN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           R+GRN +T ++V I PRRV+ F+AS +LK R+ D  +G
Sbjct: 61 ERIGRNPKTGEQVAITPRRVLTFRASHVLKDRVDDGHKG 99


>gi|312621747|ref|YP_004023360.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          kronotskyensis 2002]
 gi|312202214|gb|ADQ45541.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          kronotskyensis 2002]
          Length = 95

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 59/94 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++ +L+KSI+++ GL++KDS + +  L   I ++  +G+ +++  F TF VK++  R G
Sbjct: 1  MSKEELIKSIAEKSGLTKKDSEKALNVLLECIQEALSKGDKVQLVGFGTFEVKERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN QT +E+ I    V VFKA  +LK+ +    +
Sbjct: 61 RNPQTGEEILIPATVVPVFKAGKVLKEAVSGPSK 94


>gi|300311300|ref|YP_003775392.1| integration host factor alpha-subunit [Herbaspirillum seropedicae
          SmR1]
 gi|300074085|gb|ADJ63484.1| integration host factor alpha-subunit protein [Herbaspirillum
          seropedicae SmR1]
          Length = 104

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 60/92 (65%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           T+T+++L + + ++ GL+++++   V T F+EI ++  RGEA+K+S F  F ++ K  R
Sbjct: 2  PTLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN +T +E+ I  RRVV F AS  LK+ + 
Sbjct: 62 PGRNPKTGEEIPITARRVVTFHASQKLKEMVE 93


>gi|207724057|ref|YP_002254455.1| integration host factor alpha-subunit (ihf-alpha) protein
           [Ralstonia solanacearum MolK2]
 gi|206589266|emb|CAQ36228.1| integration host factor alpha-subunit (ihf-alpha) protein
           [Ralstonia solanacearum MolK2]
          Length = 140

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 57/96 (59%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            T+T+++L + + ++ GL++++S   V   F+ I ++  +G+++K+S F  F ++ K  R
Sbjct: 38  PTLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 97

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            GRN +T + + I  RRVV F AS  LK  +   + 
Sbjct: 98  PGRNPKTGEIIPITARRVVTFHASQKLKALVEQRVE 133


>gi|229017681|ref|ZP_04174572.1| DNA-binding protein HU 1 [Bacillus cereus AH1273]
 gi|229023899|ref|ZP_04180382.1| DNA-binding protein HU 1 [Bacillus cereus AH1272]
 gi|229173057|ref|ZP_04300608.1| DNA-binding protein HU 1 [Bacillus cereus MM3]
 gi|228610390|gb|EEK67661.1| DNA-binding protein HU 1 [Bacillus cereus MM3]
 gi|228737412|gb|EEL87924.1| DNA-binding protein HU 1 [Bacillus cereus AH1272]
 gi|228743607|gb|EEL93716.1| DNA-binding protein HU 1 [Bacillus cereus AH1273]
          Length = 90

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 58/90 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LVK++++   +S+K+++  V ++F+ I  +   G+ +++  F TF V+++ +R G
Sbjct: 1  MNKTELVKNVAQSADISQKEASAAVQSVFDTIATALQSGDKVQLIGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FKA   LK+ + 
Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAVK 90


>gi|228997443|ref|ZP_04157062.1| DNA-binding protein HU [Bacillus mycoides Rock3-17]
 gi|229005088|ref|ZP_04162812.1| DNA-binding protein HU [Bacillus mycoides Rock1-4]
 gi|228756190|gb|EEM05511.1| DNA-binding protein HU [Bacillus mycoides Rock1-4]
 gi|228762319|gb|EEM11246.1| DNA-binding protein HU [Bacillus mycoides Rock3-17]
          Length = 93

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 60/92 (65%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K + +++L+K++++   +S+K+++  V ++F+ I ++   G+ +++  F TF V+++ +R
Sbjct: 2  KKMNKTELIKNVAQTADISQKEASAAVQSVFDTIANALQTGDKVQLIGFGTFEVRERAAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E++I   +V  FKA   LK+ + 
Sbjct: 62 TGRNPQTGEEIQIAAGKVPAFKAGKELKEAVK 93


>gi|134297994|ref|YP_001111490.1| histone family protein DNA-binding protein [Desulfotomaculum
          reducens MI-1]
 gi|134050694|gb|ABO48665.1| bacterial nucleoid protein Hbs [Desulfotomaculum reducens MI-1]
          Length = 95

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 56/91 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  LS+KD+ + V+ +   I ++  +G+ I++  F TF  K + +R G
Sbjct: 1  MNKAELISAVAEKTELSKKDAEKAVSAVLGSIEEALAKGDKIQLVGFGTFESKPRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT   ++I   RV VFKA  +LK  + +
Sbjct: 61 RNPQTGDTIQIPATRVPVFKAGKVLKDAVAN 91


>gi|329894936|ref|ZP_08270735.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC3088]
 gi|328922665|gb|EGG30000.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC3088]
          Length = 91

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    +S+  + R +  +   I  +  +G+++ +  F TF VK + +R G
Sbjct: 1  MNKSELIDAIAASADISKASAGRALDAVVESITGALQKGDSVSLVGFGTFQVKPRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I    V  FKA   LK  + 
Sbjct: 61 RNPQTGAEIQIAAANVPGFKAGKALKDAVN 90


>gi|83720646|ref|YP_443105.1| integration host factor subunit alpha [Burkholderia thailandensis
           E264]
 gi|167582112|ref|ZP_02374986.1| integration host factor subunit alpha [Burkholderia thailandensis
           TXDOH]
 gi|167620270|ref|ZP_02388901.1| integration host factor subunit alpha [Burkholderia thailandensis
           Bt4]
 gi|257139334|ref|ZP_05587596.1| integration host factor subunit alpha [Burkholderia thailandensis
           E264]
 gi|83654471|gb|ABC38534.1| integration host factor, alpha subunit [Burkholderia thailandensis
           E264]
          Length = 134

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 33  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS  LK  + + 
Sbjct: 93  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 127


>gi|326692493|ref|ZP_08229498.1| nucleoid DNA-binding protein [Leuconostoc argentinum KCTC 3773]
          Length = 91

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 51/89 (57%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + +LV S++K  GL++KD+T  V  +F  I ++   GE +++  F  F V+ + +R GR
Sbjct: 3  NKQELVDSVAKATGLTKKDATAAVDAVFTSIEEALKNGEKVQLIGFGNFEVRDRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E++I   +V  FK    LK+ + 
Sbjct: 63 NPQTGAEIEIPASKVPAFKPGKALKEAVK 91


>gi|304315774|ref|YP_003850919.1| histone family protein DNA-binding protein [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
 gi|302777276|gb|ADL67835.1| histone family protein DNA-binding protein [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
          Length = 91

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  I+++  L++KD+ + +    + + ++  +G+ +++  F TF V+++  R G
Sbjct: 1  MNKADLVTKIAEKSELTKKDAEKALNAFVDAVQEALKQGDKVQLVGFGTFEVRERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +  VFKA   LK  + 
Sbjct: 61 RNPQTKEEITIPASKAPVFKAGKALKDLVN 90


>gi|153004748|ref|YP_001379073.1| integration host factor subunit alpha [Anaeromyxobacter sp.
          Fw109-5]
 gi|166918497|sp|A7HBJ3|IHFA_ANADF RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|152028321|gb|ABS26089.1| integration host factor, alpha subunit [Anaeromyxobacter sp.
          Fw109-5]
          Length = 99

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 37/90 (41%), Positives = 62/90 (68%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+++S+ ++ G S+K++   V  +F+ I ++  RGE IKIS F  F V++K SRVG
Sbjct: 1  MTKADIIESVYEKVGFSKKEAAEIVEMVFDTIKETLERGEKIKISGFGNFIVREKKSRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I  RRV+ F+ S +LK  + 
Sbjct: 61 RNPQTGEEIEISARRVLTFRPSQVLKNALN 90


>gi|313894803|ref|ZP_07828363.1| DNA-binding protein HU-beta [Selenomonas sp. oral taxon 137 str.
          F0430]
 gi|320530142|ref|ZP_08031212.1| putative integration host factor, beta subunit [Selenomonas
          artemidis F0399]
 gi|312976484|gb|EFR41939.1| DNA-binding protein HU-beta [Selenomonas sp. oral taxon 137 str.
          F0430]
 gi|320137575|gb|EFW29487.1| putative integration host factor, beta subunit [Selenomonas
          artemidis F0399]
          Length = 90

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +++++  L++KD+ + V  +F  I  +   G+ +++  F TF VK + +R G
Sbjct: 1  MNKQELVANVAEQANLTKKDAEKAVNAIFETIKGALSEGDRVQLIGFGTFEVKARQARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E+ I   +  VFKA   LK  + 
Sbjct: 61 RNPRTGKEINIPASKTPVFKAGKALKDSVN 90


>gi|302878344|ref|YP_003846908.1| integration host factor, alpha subunit [Gallionella
          capsiferriformans ES-2]
 gi|302581133|gb|ADL55144.1| integration host factor, alpha subunit [Gallionella
          capsiferriformans ES-2]
          Length = 103

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 55/99 (55%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M  T+T+++L   +  + GL+++++   V T F EI     +GE++K+S F  F ++ K 
Sbjct: 1  MITTLTKAELADLLFAKVGLNKREAKDMVETFFEEIRVQLEQGESVKLSGFGNFQLRDKP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           R GRN +T +E+ I  RRVV F  S  LK  +     G
Sbjct: 61 QRPGRNPKTGKEIPISARRVVTFHPSQKLKTLVEKSYHG 99


>gi|308066881|ref|YP_003868486.1| DNA-binding protein HU (DNA-binding protein II) [Paenibacillus
          polymyxa E681]
 gi|310639519|ref|YP_003944277.1| DNA-binding protein hu-alpha (histone-like protein)
          [Paenibacillus polymyxa SC2]
 gi|305856160|gb|ADM67948.1| DNA-binding protein HU (DNA-binding protein II) [Paenibacillus
          polymyxa E681]
 gi|309244469|gb|ADO54036.1| DNA-binding protein HU-alpha (Histone-like protein)
          [Paenibacillus polymyxa SC2]
          Length = 90

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +IS + GLS++D    +  +  EI D+   G+ +++  F TF  +++ SR G
Sbjct: 1  MNKTDLINNISSKSGLSKRDVEAVLNGVLGEITDALASGDKVQLIGFGTFETRKRSSRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   ++I    V  FKA + LK+ + 
Sbjct: 61 RNPQTGNTIEIPESTVPAFKAGNKLKEAVN 90


>gi|167562961|ref|ZP_02355877.1| integration host factor subunit alpha [Burkholderia oklahomensis
           EO147]
 gi|167570150|ref|ZP_02363024.1| integration host factor subunit alpha [Burkholderia oklahomensis
           C6786]
          Length = 134

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 33  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS  LK  + + 
Sbjct: 93  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 127


>gi|42519018|ref|NP_964948.1| DNA-binding protein HU [Lactobacillus johnsonii NCC 533]
 gi|227889872|ref|ZP_04007677.1| DNA-binding protein HU [Lactobacillus johnsonii ATCC 33200]
 gi|268319592|ref|YP_003293248.1| DNA-binding protein HU [Lactobacillus johnsonii FI9785]
 gi|41583305|gb|AAS08914.1| DNA-binding protein HU [Lactobacillus johnsonii NCC 533]
 gi|227849736|gb|EEJ59822.1| DNA-binding protein HU [Lactobacillus johnsonii ATCC 33200]
 gi|262397967|emb|CAX66981.1| DNA-binding protein HU [Lactobacillus johnsonii FI9785]
 gi|329667447|gb|AEB93395.1| DNA-binding protein HU [Lactobacillus johnsonii DPC 6026]
          Length = 91

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 49/89 (55%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV  ++ +  L++K+    V  +FN I +   +GE +++  F TF V+ + +R GR
Sbjct: 3  NKAELVSEVAAKTDLTKKEVAAAVDAIFNSIQEDLAKGEKVQLIGFGTFEVRHRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E++I   +V  FK    LK  + 
Sbjct: 63 NPQTGAEIEIPASKVPAFKPGKALKDAVK 91


>gi|228949548|ref|ZP_04111797.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228810128|gb|EEM56500.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
          Length = 90

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 55/90 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  +S++  L++KD+T  V  + ++I  S  + E++++  F TF V+++ +R G
Sbjct: 1  MNKTELINQVSEKTSLTKKDATASVQAVLDQITQSLQKDESVQLIGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +   FKA   LK+ + 
Sbjct: 61 RNPQTGEEMHIPGGKAPAFKAGKALKEAVK 90


>gi|319943681|ref|ZP_08017962.1| integration host factor subunit alpha [Lautropia mirabilis ATCC
           51599]
 gi|319742914|gb|EFV95320.1| integration host factor subunit alpha [Lautropia mirabilis ATCC
           51599]
          Length = 141

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 61/109 (55%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T++ L   + +  GL+++++   V T F EI  + +RGE++K+S F  F ++ K  R 
Sbjct: 29  TLTKAALADMLFERVGLNKREAKDMVETFFEEISAALIRGESVKLSGFGNFQLRDKQQRP 88

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSG 112
           GRN +T +E+ I  RRVV F AS  LK +I    R       +  + SG
Sbjct: 89  GRNPKTGEEIPISARRVVTFHASQKLKAQIEAPHRPAAALPLNAGAISG 137


>gi|116629549|ref|YP_814721.1| nucleoid DNA-binding protein [Lactobacillus gasseri ATCC 33323]
 gi|238852699|ref|ZP_04643109.1| DNA-binding protein HU [Lactobacillus gasseri 202-4]
 gi|282852068|ref|ZP_06261426.1| DNA-binding protein HU [Lactobacillus gasseri 224-1]
 gi|300361578|ref|ZP_07057755.1| DNA-binding protein HU [Lactobacillus gasseri JV-V03]
 gi|311110808|ref|ZP_07712205.1| DNA-binding protein HU [Lactobacillus gasseri MV-22]
 gi|116095131|gb|ABJ60283.1| bacterial nucleoid protein Hbs [Lactobacillus gasseri ATCC 33323]
 gi|238834845|gb|EEQ27072.1| DNA-binding protein HU [Lactobacillus gasseri 202-4]
 gi|282556828|gb|EFB62432.1| DNA-binding protein HU [Lactobacillus gasseri 224-1]
 gi|300354197|gb|EFJ70068.1| DNA-binding protein HU [Lactobacillus gasseri JV-V03]
 gi|311065962|gb|EFQ46302.1| DNA-binding protein HU [Lactobacillus gasseri MV-22]
          Length = 91

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 49/89 (55%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV  ++ +  L++K+    V  +F+ I +   +GE +++  F TF V+ + +R GR
Sbjct: 3  NKAELVSEVAAKTDLTKKEVAAAVDAIFSSIQEDLAKGEKVQLIGFGTFEVRHRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E++I   +V  FK    LK  + 
Sbjct: 63 NPQTGAEIEIPASKVPAFKPGKALKDAVK 91


>gi|53805229|ref|YP_113051.1| DNA-binding protein HU-beta [Methylococcus capsulatus str. Bath]
 gi|53758990|gb|AAU93281.1| DNA-binding protein HU-beta [Methylococcus capsulatus str. Bath]
          Length = 90

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+++I+    L++ D+ R +  + + I D+  +G+ + +  F +F VK++  R G
Sbjct: 1  MNKAELIEAIADAANLTKADAGRALDAVIDAITDALKKGDTVSLVGFGSFAVKERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   + I   ++  FK    LK  + 
Sbjct: 61 RNPQTGDSITIKAAKIPSFKCGKALKDAVN 90


>gi|83588958|ref|YP_428967.1| nucleoid protein Hbs [Moorella thermoacetica ATCC 39073]
 gi|83571872|gb|ABC18424.1| bacterial nucleoid protein Hbs [Moorella thermoacetica ATCC
          39073]
          Length = 91

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 56/90 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+ S++++  L++KD+ + V  +   I ++  +GE +++  F TF +K++ +RVG
Sbjct: 1  MNKMDLIASVAEKTDLTKKDAEKVVNAVLASIEEALAQGEKVQLVGFGTFEIKERAARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E++I   R  VFKA   LK  + 
Sbjct: 61 RNPRTGEEIQIAATRAPVFKAGKALKDAVA 90


>gi|317120952|ref|YP_004100955.1| bacterial nucleoid protein Hbs [Thermaerobacter marianensis DSM
          12885]
 gi|315590932|gb|ADU50228.1| bacterial nucleoid protein Hbs [Thermaerobacter marianensis DSM
          12885]
          Length = 90

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +I+++ GL+RKDS + V      I ++  +GE + +  F TF V+ + +R G
Sbjct: 1  MNKPELVNAIAEKTGLNRKDSEKAVNAFVESISEALAKGEKVSLVGFGTFEVRTRQARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T Q + I   +V  FK    L++ + 
Sbjct: 61 RNPRTGQTLTIPAAKVPAFKPGKQLREVVK 90


>gi|313124300|ref|YP_004034559.1| DNA-binding protein hu-alpha (histone-like protein)
          [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280863|gb|ADQ61582.1| DNA-binding protein HU-alpha (Histone-like protein)
          [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 90

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  +S++   S+K+S + V  LF  I ++  +GE +++  F TF ++++ +R G
Sbjct: 1  MNKTELVSVVSEKTEFSKKESAQIVDALFASIEEALAKGEKVQLIGFGTFEIRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I   +V  FK    LK  + 
Sbjct: 61 RNPQTGAEIEIPASKVPAFKPGKALKDAVK 90


>gi|77165249|ref|YP_343774.1| histone-like DNA-binding protein [Nitrosococcus oceani ATCC
          19707]
 gi|254433630|ref|ZP_05047138.1| DNA-binding protein HU [Nitrosococcus oceani AFC27]
 gi|300114007|ref|YP_003760582.1| histone family protein DNA-binding protein [Nitrosococcus
          watsonii C-113]
 gi|76883563|gb|ABA58244.1| Histone-like DNA-binding protein [Nitrosococcus oceani ATCC
          19707]
 gi|207089963|gb|EDZ67234.1| DNA-binding protein HU [Nitrosococcus oceani AFC27]
 gi|299539944|gb|ADJ28261.1| histone family protein DNA-binding protein [Nitrosococcus
          watsonii C-113]
          Length = 90

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++S++    L++  + R V ++   + D+  RG+ + I  F TF V+ + +R G
Sbjct: 1  MNKSELIESVADAGNLTKAAAARAVDSVIEAVTDALRRGDQVTIVGFGTFSVRDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI   ++  FKA   LK  + 
Sbjct: 61 RNPQTGEEIKIKASKMPSFKAGKALKDAVN 90


>gi|256822926|ref|YP_003146889.1| integration host factor subunit alpha [Kangiella koreensis DSM
           16069]
 gi|256796465|gb|ACV27121.1| integration host factor, alpha subunit [Kangiella koreensis DSM
           16069]
          Length = 100

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 56/98 (57%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++D+ + + +E GL++++S   V   F +I D+   G  +K+S F  F ++ K  R 
Sbjct: 2   ALTKADMAERLYEELGLNKRESKEIVEAFFEQIRDALEDGYNVKLSGFGNFELRDKAQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +EV I  RRVV FK    L+ ++ D +   +
Sbjct: 62  GRNPKTGEEVPISARRVVTFKPGQKLRGKVADYVGTEQ 99


>gi|300691321|ref|YP_003752316.1| integration host factor (IHF), alpha subunit [Ralstonia
           solanacearum PSI07]
 gi|299078381|emb|CBJ51031.1| integration host factor (IHF), alpha subunit [Ralstonia
           solanacearum PSI07]
          Length = 135

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 58/96 (60%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            T+T+++L + + ++ GL++++S   V   FN I ++  +G+++K+S F  F ++ K  R
Sbjct: 33  PTLTKAELAEMLFEQVGLNKRESKDMVEAFFNVIREALEQGDSVKLSGFGNFQLRDKPQR 92

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            GRN +T + + I  RRVV F AS  LK  + + + 
Sbjct: 93  PGRNPKTGEIIPITARRVVTFHASQKLKALVEERVE 128


>gi|154253667|ref|YP_001414491.1| histone family DNA-binding protein [Parvibaculum lavamentivorans
          DS-1]
 gi|154157617|gb|ABS64834.1| histone family protein DNA-binding protein [Parvibaculum
          lavamentivorans DS-1]
          Length = 91

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  ++   GLS+ D+T+ V  +F+ I DS  +GE +++  F TF+V  + +  G
Sbjct: 1  MNKNDLIAEVADRSGLSKADATKAVDYVFDIITDSLKKGEEVRLVGFGTFNVSNRAATEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + ++I   +   FKA   LK  + 
Sbjct: 61 RNPRTGETIQIPASKQPKFKAGKGLKDAVN 90


>gi|292669443|ref|ZP_06602869.1| DNA-binding protein HU-beta [Selenomonas noxia ATCC 43541]
 gi|292648896|gb|EFF66868.1| DNA-binding protein HU-beta [Selenomonas noxia ATCC 43541]
          Length = 111

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 55/91 (60%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+ + +LV +++++ GL++KD+ + V  +F  +  +  +G+ I++  F TF VK + +R 
Sbjct: 21  TLNKQELVANVAEQAGLTKKDAEKAVNAVFETVKGALSKGDKIQLIGFGTFEVKARKARK 80

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E+ I   +  VFKA   LK  + 
Sbjct: 81  GRNPQTGKEINIPASKNPVFKAGKALKDSVN 111


>gi|167836846|ref|ZP_02463729.1| integration host factor subunit alpha [Burkholderia thailandensis
           MSMB43]
          Length = 134

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 33  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS  LK  + + 
Sbjct: 93  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 127


>gi|167036676|ref|YP_001664254.1| histone family protein DNA-binding protein [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|167039345|ref|YP_001662330.1| histone family protein DNA-binding protein [Thermoanaerobacter
          sp. X514]
 gi|256752345|ref|ZP_05493206.1| histone family protein DNA-binding protein [Thermoanaerobacter
          ethanolicus CCSD1]
 gi|300913985|ref|ZP_07131302.1| histone family protein DNA-binding protein [Thermoanaerobacter
          sp. X561]
 gi|307725332|ref|YP_003905083.1| histone family protein DNA-binding protein [Thermoanaerobacter
          sp. X513]
 gi|320115103|ref|YP_004185262.1| histone family protein DNA-binding protein [Thermoanaerobacter
          brockii subsp. finnii Ako-1]
 gi|166853585|gb|ABY91994.1| histone family protein DNA-binding protein [Thermoanaerobacter
          sp. X514]
 gi|166855510|gb|ABY93918.1| histone family protein DNA-binding protein [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|256748756|gb|EEU61799.1| histone family protein DNA-binding protein [Thermoanaerobacter
          ethanolicus CCSD1]
 gi|300890670|gb|EFK85815.1| histone family protein DNA-binding protein [Thermoanaerobacter
          sp. X561]
 gi|307582393|gb|ADN55792.1| histone family protein DNA-binding protein [Thermoanaerobacter
          sp. X513]
 gi|319928194|gb|ADV78879.1| histone family protein DNA-binding protein [Thermoanaerobacter
          brockii subsp. finnii Ako-1]
          Length = 91

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  I+++  L++KD+ + +      + ++   G+ +++  F TF V+++  R G
Sbjct: 1  MNKADLVAKIAEKSELTKKDAEKALNAFIEAVEEALKNGDKVQLVGFGTFEVRERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +  +FKA   LK  + 
Sbjct: 61 RNPQTKEEITIPASKAPIFKAGKALKDLVN 90


>gi|309782533|ref|ZP_07677256.1| integration host factor, alpha subunit [Ralstonia sp. 5_7_47FAA]
 gi|308918624|gb|EFP64298.1| integration host factor, alpha subunit [Ralstonia sp. 5_7_47FAA]
          Length = 138

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 58/96 (60%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            T+T+++L + + ++ GL++++S   V   F+ I ++  +G+++K+S F  F ++ K  R
Sbjct: 36  PTLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 95

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            GRN +T + + I  RRVV F AS  LK  + + + 
Sbjct: 96  PGRNPKTGEIIPITARRVVTFHASQKLKALVEERVE 131


>gi|194333137|ref|YP_002014997.1| histone family protein DNA-binding protein [Prosthecochloris
          aestuarii DSM 271]
 gi|194310955|gb|ACF45350.1| histone family protein DNA-binding protein [Prosthecochloris
          aestuarii DSM 271]
          Length = 94

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++++LV+ I+ + GL++ D+ R V +  + + DS   GE + +  F TF V ++  R G
Sbjct: 4  MSKAELVEKIASQAGLTKADAERAVNSFVSVVTDSLKAGEDVTLVGFGTFSVGERAERQG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I  R+ V FK    LK+ +
Sbjct: 64 RNPQTGETITIAARKAVKFKPGKALKEEV 92


>gi|329666305|pdb|3RHI|A Chain A, Dna-Binding Protein Hu From Bacillus Anthracis
 gi|329666306|pdb|3RHI|B Chain B, Dna-Binding Protein Hu From Bacillus Anthracis
 gi|329666307|pdb|3RHI|C Chain C, Dna-Binding Protein Hu From Bacillus Anthracis
 gi|329666308|pdb|3RHI|D Chain D, Dna-Binding Protein Hu From Bacillus Anthracis
          Length = 93

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 58/93 (62%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          S  + +++L+K++++   +S+K++T  V T+   I ++   GE +++  F TF V+++ +
Sbjct: 1  SNAMNKTELIKNVAQNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAA 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          R GRN QT +E++I   +V  FKA   LK+ + 
Sbjct: 61 RTGRNPQTGEEMQIAASKVPAFKAGKELKEAVK 93


>gi|89073233|ref|ZP_01159763.1| putative bacterial nucleoid DNA-binding protein [Photobacterium
          sp. SKA34]
 gi|90579275|ref|ZP_01235085.1| putative bacterial nucleoid DNA-binding protein [Vibrio angustum
          S14]
 gi|89050943|gb|EAR56407.1| putative bacterial nucleoid DNA-binding protein [Photobacterium
          sp. SKA34]
 gi|90440108|gb|EAS65289.1| putative bacterial nucleoid DNA-binding protein [Vibrio angustum
          S14]
          Length = 90

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV  I++   +S+  + R +      + D+   GE + +  F TF V+++ +R G
Sbjct: 1  MNKTQLVDKIAESADISKASAGRALDAFIEAVSDTLKDGEQVALVGFGTFSVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I   +V  FK    LK  + 
Sbjct: 61 RNPQTGAEIQIAAAKVPGFKPGKALKDSVN 90


>gi|304437105|ref|ZP_07397068.1| DNA-binding protein HU [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370056|gb|EFM23718.1| DNA-binding protein HU [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 100

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 54/91 (59%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+ + +LV +++++  L++KD+ + V  LF  I  +   G+ I++  F TF VK + +R 
Sbjct: 10  TLNKQELVANVAEQASLTKKDAEKAVNALFETIKGALSEGDKIQLIGFGTFEVKDRAARK 69

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E++I   R  VFKA   LK  + 
Sbjct: 70  GRNPQTGKEIEIAASRNPVFKAGKALKDAVN 100


>gi|311694258|gb|ADP97131.1| integration host factor, beta subunit [marine bacterium HP15]
          Length = 98

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV+ I+ K+  LS KD    V T+   +  S   G+ I+I  F +F +  + +R 
Sbjct: 1  MTKSELVELIASKQTQLSVKDVELAVKTIIEHMSQSLADGQRIEIRGFGSFSLHHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T + V++  + V  FK    L++++ D ++
Sbjct: 61 GRNPKTGEAVQLPAKYVPHFKPGKELREQVNDSLK 95


>gi|20808810|ref|NP_623981.1| nucleoid DNA-binding protein [Thermoanaerobacter tengcongensis
          MB4]
 gi|20517460|gb|AAM25585.1| Bacterial nucleoid DNA-binding protein [Thermoanaerobacter
          tengcongensis MB4]
          Length = 91

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  I+++  L++KD+ + +      + ++   G+ +++  F TF V+++  R G
Sbjct: 1  MNKAELVAKIAEKSELTKKDAEKALNAFIEAVQEALKNGDKVQLVGFGTFEVRERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +  +FKA   LK  + 
Sbjct: 61 RNPQTREEITIPASKAPIFKAGKALKDLVN 90


>gi|209964628|ref|YP_002297543.1| integration host factor subunit alpha [Rhodospirillum centenum
          SW]
 gi|209958094|gb|ACI98730.1| integration host factor, alpha subunit [Rhodospirillum centenum
          SW]
          Length = 106

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/97 (47%), Positives = 70/97 (72%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+ T+TR+ L +++ +E GLSR +S   V ++ +EI D+  RG+ +KISSF +F V+ KG
Sbjct: 1  MANTVTRAQLSEAVYQEVGLSRNESADLVESVLDEISDALARGDMVKISSFGSFSVRAKG 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           R+GRN +T +EV I PRRV+VF+AS +LK RI + +
Sbjct: 61 QRIGRNPKTGEEVPILPRRVLVFRASHVLKNRINEGL 97


>gi|154498745|ref|ZP_02037123.1| hypothetical protein BACCAP_02736 [Bacteroides capillosus ATCC
          29799]
 gi|150272135|gb|EDM99339.1| hypothetical protein BACCAP_02736 [Bacteroides capillosus ATCC
          29799]
          Length = 91

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ + +++ GLS+KD+   +    + I  +   G+ I++  F +F VK + +R+G
Sbjct: 1  MNKAELINAAAEKAGLSKKDTENALNAALDVIAAALAEGDKIQLVGFGSFEVKSRAARIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T +E+ I   +V VFK    LK  +  
Sbjct: 61 RNPKTKEEITIPASKVPVFKPGKALKDAVAQ 91


>gi|83593003|ref|YP_426755.1| integration host factor, subunit alpha [Rhodospirillum rubrum ATCC
           11170]
 gi|123739530|sp|Q2RTS7|IHFA_RHORT RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|83575917|gb|ABC22468.1| Integration host factor, alpha subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 105

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 48/102 (47%), Positives = 70/102 (68%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KTITR+ L +++ +E GLSR +S   +  + NE+ ++ V G+ +KISSF +F V++KG 
Sbjct: 3   GKTITRAQLSEAVYQEVGLSRNESADLLEMVLNEMSEALVEGDTVKISSFGSFSVREKGE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           RVGRN +T +EV I PRRV+VF+ S +LK RI D   G + N
Sbjct: 63  RVGRNPKTGEEVPILPRRVLVFRPSQLLKARINDGAVGSQIN 104


>gi|116618389|ref|YP_818760.1| nucleoid protein Hbs [Leuconostoc mesenteroides subsp.
          mesenteroides ATCC 8293]
 gi|227431692|ref|ZP_03913722.1| non-specific DNA-binding protein HBsu [Leuconostoc mesenteroides
          subsp. cremoris ATCC 19254]
 gi|116097236|gb|ABJ62387.1| bacterial nucleoid protein Hbs [Leuconostoc mesenteroides subsp.
          mesenteroides ATCC 8293]
 gi|227352516|gb|EEJ42712.1| non-specific DNA-binding protein HBsu [Leuconostoc mesenteroides
          subsp. cremoris ATCC 19254]
          Length = 91

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 51/89 (57%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + +LV S++K  GL++KD+T  V  +F  I ++   GE +++  F  F V+ + +R GR
Sbjct: 3  NKQELVDSVAKATGLTKKDATASVDAVFASIEEALKNGEKVQLIGFGNFEVRDRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E++I   +V  FK    LK  + 
Sbjct: 63 NPQTGEEIQIAASKVPAFKPGKALKDAVK 91


>gi|77360983|ref|YP_340558.1| DNA-binding protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76875894|emb|CAI87115.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas
          haloplanktis TAC125]
          Length = 90

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R + +    +  +   G+++ +  F TF V+ + +R G
Sbjct: 1  MNKSQLIDQIAADADISKAAAGRALDSFIESVTGALKEGDSVALVGFGTFSVRDRAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++I    +  FKA   LK  + 
Sbjct: 61 RNPQTGETIQIAAATIPAFKAGKALKDAVN 90


>gi|269103657|ref|ZP_06156354.1| DNA-binding protein HU-alpha [Photobacterium damselae subsp.
          damselae CIP 102761]
 gi|268163555|gb|EEZ42051.1| DNA-binding protein HU-alpha [Photobacterium damselae subsp.
          damselae CIP 102761]
          Length = 90

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +    + I D+   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDLIAEKADLSKAQAKAALEATLDGITDALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I    V  F A   LK  + 
Sbjct: 61 RNPQTGAEIQIAAANVPAFVAGKALKDSVK 90


>gi|289579291|ref|YP_003477918.1| histone family protein DNA-binding protein [Thermoanaerobacter
          italicus Ab9]
 gi|297545442|ref|YP_003677744.1| histone family protein DNA-binding protein [Thermoanaerobacter
          mathranii subsp. mathranii str. A3]
 gi|307264995|ref|ZP_07546556.1| histone family protein DNA-binding protein [Thermoanaerobacter
          wiegelii Rt8.B1]
 gi|326390096|ref|ZP_08211658.1| histone family protein DNA-binding protein [Thermoanaerobacter
          ethanolicus JW 200]
 gi|289529004|gb|ADD03356.1| histone family protein DNA-binding protein [Thermoanaerobacter
          italicus Ab9]
 gi|296843217|gb|ADH61733.1| histone family protein DNA-binding protein [Thermoanaerobacter
          mathranii subsp. mathranii str. A3]
 gi|306919980|gb|EFN50193.1| histone family protein DNA-binding protein [Thermoanaerobacter
          wiegelii Rt8.B1]
 gi|325993961|gb|EGD52391.1| histone family protein DNA-binding protein [Thermoanaerobacter
          ethanolicus JW 200]
          Length = 91

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  I+++  L++KD+ + +      + ++   G+ +++  F TF V+++  R G
Sbjct: 1  MNKADLVAKIAEKSELTKKDAEKALNAFIEAVEEALKNGDKVQLVGFGTFEVRERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +  +FKA   LK  + 
Sbjct: 61 RNPQTREEITIPASKAPIFKAGKALKDLVN 90


>gi|238027725|ref|YP_002911956.1| integration host factor subunit alpha [Burkholderia glumae BGR1]
 gi|237876919|gb|ACR29252.1| Integration host factor alpha subunit [Burkholderia glumae BGR1]
          Length = 133

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 32  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 91

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS  LK  + + 
Sbjct: 92  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 126


>gi|224826508|ref|ZP_03699609.1| integration host factor, alpha subunit [Lutiella nitroferrum 2002]
 gi|224601109|gb|EEG07291.1| integration host factor, alpha subunit [Lutiella nitroferrum 2002]
          Length = 98

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 54/97 (55%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L   +  + GL+++++   V + F EI  +   G+++K+S F  F ++ K  R 
Sbjct: 2   TLTKAELADLLFDKVGLNKREAKDMVESFFEEIRQALESGDSVKLSGFGNFQLRDKPQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T +E+ I  RRVV F AS  LK  +       
Sbjct: 62  GRNPKTGEEIPITARRVVTFHASQKLKGMVEQHHANN 98


>gi|149926883|ref|ZP_01915142.1| Integration host factor, alpha subunit [Limnobacter sp. MED105]
 gi|149824435|gb|EDM83653.1| Integration host factor, alpha subunit [Limnobacter sp. MED105]
          Length = 122

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 55/93 (59%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S ++T+++L + +    GL+++++  FV   F+EI  +   G+++K+S F  F ++ K  
Sbjct: 30  SGSLTKAELAEMLFDSLGLNKREAKDFVDAFFDEIRTTLESGDSVKLSGFGNFQLRDKPQ 89

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           R GRN +T +E+ I  RRVV F  S  LK  + 
Sbjct: 90  RPGRNPKTGEEIPIAARRVVTFHPSQKLKALVE 122


>gi|68249030|ref|YP_248142.1| DNA-binding protein HU [Haemophilus influenzae 86-028NP]
 gi|68057229|gb|AAX87482.1| DNA-binding protein HU [Haemophilus influenzae 86-028NP]
          Length = 136

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 48/92 (52%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           K + ++DL+ +I+    L++K +   +    + I  S   GE +++  F TF V ++ +R
Sbjct: 45  KFMNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAAR 104

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            GRN QT  E++I   +V  F +   LK  I 
Sbjct: 105 TGRNPQTGAEIQIAASKVPAFVSGKALKDAIK 136


>gi|87122323|ref|ZP_01078205.1| Integration host factor alpha subunit [Marinomonas sp. MED121]
 gi|86162466|gb|EAQ63749.1| Integration host factor alpha subunit [Marinomonas sp. MED121]
          Length = 98

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 60/95 (63%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ +++  E GLS+KDS   V + F+ I ++ ++GE +K+S F  F V++K  R 
Sbjct: 3  ALTKADIAENLVDEVGLSKKDSKDLVESFFDVIRETLIQGEQVKLSGFGNFEVREKSQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +E+ I  R VV F+    LK ++ + M+
Sbjct: 63 GRNPKTGEEIPITARTVVTFRPGQKLKSKVENYMQ 97


>gi|226312045|ref|YP_002771939.1| DNA-binding protein HU [Brevibacillus brevis NBRC 100599]
 gi|226094993|dbj|BAH43435.1| DNA-binding protein HU [Brevibacillus brevis NBRC 100599]
          Length = 90

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  +++   L++KD+T+ V  + + I D+   G+ +++  F  F V+++ +R G
Sbjct: 1  MNKTELIAKVAETTELTKKDATKAVDAVLDAIADALKTGDKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FK    LK  I 
Sbjct: 61 RNPQTGEEIEIASSKVPAFKPGKQLKDSIK 90


>gi|169830293|ref|YP_001716275.1| histone family protein DNA-binding protein [Candidatus
          Desulforudis audaxviator MP104C]
 gi|169637137|gb|ACA58643.1| histone family protein DNA-binding protein [Candidatus
          Desulforudis audaxviator MP104C]
          Length = 91

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 56/89 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  L++KD+ + ++ +   I ++   G+ +++  F TF  +++ +R G
Sbjct: 1  MNKAELISSVAEKTNLTKKDAEKALSAMLESIREALSAGDKVQLVGFGTFETRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V VFKA   L++ +
Sbjct: 61 RNPQTGEEIDIAATKVPVFKAGKELRESV 89


>gi|315127186|ref|YP_004069189.1| DNA-binding protein [Pseudoalteromonas sp. SM9913]
 gi|315015700|gb|ADT69038.1| DNA-binding protein [Pseudoalteromonas sp. SM9913]
          Length = 90

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R + +    +  +   G+++ +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDQIAADADISKAAAGRALDSFIESVSGALKDGDSVALVGFGTFSVRERAARAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++I    +  FKA   LK  + 
Sbjct: 61 RNPQTGETIQIAAANIPAFKAGKALKDAVN 90


>gi|89075365|ref|ZP_01161787.1| putative DNA-binding protein HU-alpha [Photobacterium sp. SKA34]
 gi|90581302|ref|ZP_01237099.1| putative DNA-binding protein HU-alpha [Vibrio angustum S14]
 gi|89048914|gb|EAR54483.1| putative DNA-binding protein HU-alpha [Photobacterium sp. SKA34]
 gi|90437541|gb|EAS62735.1| putative DNA-binding protein HU-alpha [Vibrio angustum S14]
          Length = 90

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +  + I D+   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDLIAEKADLSKAQAKAALESTLDGITDALKDGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I    V  F A   LK  + 
Sbjct: 61 RNPQTGAEIQIAAANVPAFVAGKALKDALK 90


>gi|307945252|ref|ZP_07660588.1| integration host factor subunit alpha [Roseibium sp. TrichSKD4]
 gi|307771125|gb|EFO30350.1| integration host factor subunit alpha [Roseibium sp. TrichSKD4]
          Length = 104

 Score =  136 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 48/99 (48%), Positives = 72/99 (72%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            +TITR+DL +++ ++ GLSR +S+  V  +  EI D  V GE++K+SSF +F V+ KG 
Sbjct: 3   GRTITRADLCEAVYQKVGLSRTESSELVERVLAEISDCLVTGESVKLSSFGSFVVRSKGE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           R+GRN +T +EV I PRRV+VFK S++LK+RI D + G+
Sbjct: 63  RIGRNPKTGEEVPISPRRVMVFKPSNVLKQRINDSLTGK 101


>gi|255659240|ref|ZP_05404649.1| DNA-binding protein HU [Mitsuokella multacida DSM 20544]
 gi|260848694|gb|EEX68701.1| DNA-binding protein HU [Mitsuokella multacida DSM 20544]
          Length = 91

 Score =  136 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 56/90 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV S++++ GL++KD+ + V  +F  I  + V G+ +++  F TF VK++ +R G
Sbjct: 1  MNKNELVASVAEKAGLTKKDAEKAVGAIFESIQQALVEGDKVQVIGFGTFEVKERSARAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +TN+ ++I   +   FKA   LK  + 
Sbjct: 61 RNPRTNETIQIPASKNPAFKAGKALKDAVN 90


>gi|331005201|ref|ZP_08328595.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC1989]
 gi|330420983|gb|EGG95255.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC1989]
          Length = 91

 Score =  136 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    L +  + R +  +   I  +   G+ + +  F TF VK + +R G
Sbjct: 1  MNKSELIDAIAASADLPKAAAGRALDAVLETIESTLKNGDPVTLVGFGTFSVKDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   ++I   ++  FKA   LK  + 
Sbjct: 61 RNPQTGAPIQIAAAKIPGFKAGKSLKDAVN 90


>gi|237653680|ref|YP_002889994.1| integration host factor subunit alpha [Thauera sp. MZ1T]
 gi|237624927|gb|ACR01617.1| integration host factor, alpha subunit [Thauera sp. MZ1T]
          Length = 101

 Score =  136 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 56/100 (56%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L   + ++ GL+++++   V   F EI  +  RG+++K+S F  F ++ K  R 
Sbjct: 2   TLTKAELADLLFEQVGLNKREAKDMVEGFFEEIRTALERGDSVKLSGFGNFQLRDKPQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           GRN +T +E+ I  RRVV F AS  LK  +       K  
Sbjct: 62  GRNPKTGEEIPITARRVVTFHASQKLKAAVEQLSDASKQP 101


>gi|53725309|ref|YP_102781.1| integration host factor subunit alpha [Burkholderia mallei ATCC
           23344]
 gi|121600745|ref|YP_992860.1| integration host factor subunit alpha [Burkholderia mallei SAVP1]
 gi|124384579|ref|YP_001026200.1| integration host factor subunit alpha [Burkholderia mallei NCTC
           10229]
 gi|126450691|ref|YP_001080530.1| integration host factor subunit alpha [Burkholderia mallei NCTC
           10247]
 gi|134282277|ref|ZP_01768982.1| integration host factor alpha subunit [Burkholderia pseudomallei
           305]
 gi|167003084|ref|ZP_02268874.1| integration host factor alpha subunit [Burkholderia mallei PRL-20]
 gi|167719842|ref|ZP_02403078.1| integration host factor subunit alpha [Burkholderia pseudomallei
           DM98]
 gi|167824439|ref|ZP_02455910.1| integration host factor subunit alpha [Burkholderia pseudomallei 9]
 gi|167902953|ref|ZP_02490158.1| integration host factor subunit alpha [Burkholderia pseudomallei
           NCTC 13177]
 gi|217423737|ref|ZP_03455238.1| integration host factor alpha subunit [Burkholderia pseudomallei
           576]
 gi|237812022|ref|YP_002896473.1| integration host factor, alpha subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238562599|ref|ZP_00440142.2| integration host factor, alpha subunit [Burkholderia mallei GB8
           horse 4]
 gi|254179998|ref|ZP_04886597.1| integration host factor alpha subunit [Burkholderia pseudomallei
           1655]
 gi|254197506|ref|ZP_04903928.1| integration host factor alpha subunit [Burkholderia pseudomallei
           S13]
 gi|254199733|ref|ZP_04906099.1| integration host factor alpha subunit [Burkholderia mallei FMH]
 gi|254206055|ref|ZP_04912407.1| integration host factor alpha subunit [Burkholderia mallei JHU]
 gi|254358426|ref|ZP_04974699.1| integration host factor alpha subunit [Burkholderia mallei
           2002721280]
 gi|52428732|gb|AAU49325.1| integration host factor, alpha subunit [Burkholderia mallei ATCC
           23344]
 gi|121229555|gb|ABM52073.1| integration host factor, alpha subunit [Burkholderia mallei SAVP1]
 gi|124292599|gb|ABN01868.1| integration host factor, alpha subunit [Burkholderia mallei NCTC
           10229]
 gi|126243561|gb|ABO06654.1| integration host factor alpha subunit [Burkholderia mallei NCTC
           10247]
 gi|134246315|gb|EBA46404.1| integration host factor alpha subunit [Burkholderia pseudomallei
           305]
 gi|147749329|gb|EDK56403.1| integration host factor alpha subunit [Burkholderia mallei FMH]
 gi|147753498|gb|EDK60563.1| integration host factor alpha subunit [Burkholderia mallei JHU]
 gi|148027553|gb|EDK85574.1| integration host factor alpha subunit [Burkholderia mallei
           2002721280]
 gi|169654247|gb|EDS86940.1| integration host factor alpha subunit [Burkholderia pseudomallei
           S13]
 gi|184210538|gb|EDU07581.1| integration host factor alpha subunit [Burkholderia pseudomallei
           1655]
 gi|217393595|gb|EEC33616.1| integration host factor alpha subunit [Burkholderia pseudomallei
           576]
 gi|237505242|gb|ACQ97560.1| integration host factor, alpha subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238522284|gb|EEP85729.1| integration host factor, alpha subunit [Burkholderia mallei GB8
           horse 4]
 gi|243061335|gb|EES43521.1| integration host factor alpha subunit [Burkholderia mallei PRL-20]
          Length = 134

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 33  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS  LK  + + 
Sbjct: 93  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 127


>gi|94310111|ref|YP_583321.1| integration host factor subunit alpha [Cupriavidus metallidurans
           CH34]
 gi|93353963|gb|ABF08052.1| integration host factor, alpha subunit 1 (IHF-alpha 1) [Cupriavidus
           metallidurans CH34]
          Length = 136

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 57/93 (61%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            T+T+++L + +  + GL++++S   V   F+ I ++  RG+++K+S F  F ++ K  R
Sbjct: 38  PTLTKAELAEMLFDQVGLNKRESKDMVEAFFDVIREALERGDSVKLSGFGNFQLRDKAQR 97

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            GRN +T + + I  RRVV F AS  LK ++ +
Sbjct: 98  PGRNPKTGEIIPITARRVVTFHASQKLKAQVEE 130


>gi|330444951|ref|ZP_08308605.1| DNA-binding protein HU-&alpha [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
 gi|328493069|dbj|GAA03102.1| DNA-binding protein HU-&alpha [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
          Length = 90

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +  + I D+   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDLIAEKADLSKAQAKAALESTLDGITDALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I    V  F A   LK  + 
Sbjct: 61 RNPQTGAEIQIAAANVPAFVAGKALKDALK 90


>gi|330446590|ref|ZP_08310242.1| putative bacterial nucleoid DNA-binding protein [Photobacterium
          leiognathi subsp. mandapamensis svers.1.1.]
 gi|328490781|dbj|GAA04739.1| putative bacterial nucleoid DNA-binding protein [Photobacterium
          leiognathi subsp. mandapamensis svers.1.1.]
          Length = 90

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV  I++   +S+  + R +      + ++   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKTQLVDKIAESADISKASAGRALDAFIEAVSETLKDGDQVALVGFGTFSVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I   +V  FK    LK  + 
Sbjct: 61 RNPQTGAEIQIAAAKVPGFKPGKALKDSVN 90


>gi|295696966|ref|YP_003590204.1| histone family protein DNA-binding protein [Bacillus tusciae DSM
          2912]
 gi|295412568|gb|ADG07060.1| histone family protein DNA-binding protein [Bacillus tusciae DSM
          2912]
          Length = 92

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 55/92 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ DL+  ++++ GL++K ++  V  + + I ++   GE++ ++ F +F V+++ +R G
Sbjct: 1  MTKQDLIAKVAEKSGLTKKAASAAVDAVLDTIQEALQAGESVGLTGFGSFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN QT + ++I   +  VF+    LK+ +   
Sbjct: 61 RNPQTGETIEIAGGKTPVFRPGKTLKEAVKSA 92


>gi|330816675|ref|YP_004360380.1| Integration host factor alpha subunit [Burkholderia gladioli BSR3]
 gi|327369068|gb|AEA60424.1| Integration host factor alpha subunit [Burkholderia gladioli BSR3]
          Length = 133

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 32  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 91

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS  LK  + + 
Sbjct: 92  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 126


>gi|126438744|ref|YP_001058758.1| integration host factor subunit alpha [Burkholderia pseudomallei
           668]
 gi|126218237|gb|ABN81743.1| integration host factor alpha subunit [Burkholderia pseudomallei
           668]
          Length = 134

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 33  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS  LK  + + 
Sbjct: 93  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 127


>gi|269102132|ref|ZP_06154829.1| DNA-binding protein HU-beta [Photobacterium damselae subsp.
          damselae CIP 102761]
 gi|268162030|gb|EEZ40526.1| DNA-binding protein HU-beta [Photobacterium damselae subsp.
          damselae CIP 102761]
          Length = 90

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV  I++   +S+  + R +      + D+   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKTQLVDKIAENADISKASAGRALDAFIEAVSDTLKSGDQVALVGFGTFSVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGAEIQIAAAKVPGFKAGKALKDSVN 90


>gi|329296785|ref|ZP_08254121.1| transcriptional regulator HU subunit beta [Plautia stali
          symbiont]
          Length = 90

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R +      + D+   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAADADISKAAAGRVLDAFMGSVSDALKDGDEVALVGFGTFSVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F++   LK  + 
Sbjct: 61 RNPQTGKEITIPAGKVPGFRSGKALKDAVN 90


>gi|209516669|ref|ZP_03265522.1| integration host factor, alpha subunit [Burkholderia sp. H160]
 gi|295677042|ref|YP_003605566.1| integration host factor, alpha subunit [Burkholderia sp. CCGE1002]
 gi|209502944|gb|EEA02947.1| integration host factor, alpha subunit [Burkholderia sp. H160]
 gi|295436885|gb|ADG16055.1| integration host factor, alpha subunit [Burkholderia sp. CCGE1002]
          Length = 136

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 54/98 (55%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   G+++K+S F  F ++ K  
Sbjct: 35  TPTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQ 94

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           R GRN +T + + I  RRVV F AS  LK  + +    
Sbjct: 95  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGAEA 132


>gi|239831603|ref|ZP_04679932.1| integration host factor, alpha subunit [Ochrobactrum intermedium
           LMG 3301]
 gi|239823870|gb|EEQ95438.1| integration host factor, alpha subunit [Ochrobactrum intermedium
           LMG 3301]
          Length = 132

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 48/104 (46%), Positives = 74/104 (71%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +++ ++ GLSR +S   V  + +E+CD+ V GE +K+SSFATF V+ K  
Sbjct: 28  GKTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNE 87

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           R+GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+    
Sbjct: 88  RIGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKREAKSQ 131


>gi|300715594|ref|YP_003740397.1| DNA-binding protein HU-beta [Erwinia billingiae Eb661]
 gi|299061430|emb|CAX58542.1| DNA-binding protein HU-beta [Erwinia billingiae Eb661]
          Length = 90

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +      + DS   G+ + +  F TF V+++  R G
Sbjct: 1  MNKSQLIDKIAASADISKAAAGRVLDAFMGSVSDSLKEGDEVALVGFGTFSVRERSERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F+A   LK  + 
Sbjct: 61 RNPQTGKEITIPAGKVPGFRAGKALKDAVN 90


>gi|296131726|ref|YP_003638973.1| histone family protein DNA-binding protein [Thermincola sp. JR]
 gi|296030304|gb|ADG81072.1| histone family protein DNA-binding protein [Thermincola potens
          JR]
          Length = 90

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 56/89 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLV S++++ GL++KD+ + V+ +F  I ++  +G+ +++  F TF V+++ +R G
Sbjct: 1  MNKQDLVSSVAEKAGLTKKDADKAVSAVFASIEEALAKGDKVQLVGFGTFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I   +V  FKA   LK  +
Sbjct: 61 RNPQTGAVIEIAAAKVPAFKAGKALKDAV 89


>gi|167816064|ref|ZP_02447744.1| integration host factor subunit alpha [Burkholderia pseudomallei
           91]
          Length = 134

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 33  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS  LK  + + 
Sbjct: 93  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 127


>gi|253576875|ref|ZP_04854200.1| histone family protein DNA-binding protein [Paenibacillus sp.
          oral taxon 786 str. D14]
 gi|251843742|gb|EES71765.1| histone family protein DNA-binding protein [Paenibacillus sp.
          oral taxon 786 str. D14]
          Length = 90

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +IS + GL++KD    +     EI D+   G+ +++  F TF  +++  R G
Sbjct: 1  MNKTDLINNISSKSGLTKKDVESVLNGFLGEITDALASGDKVQLIGFGTFETRKRSGRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++I    V  FKA + LK+ + 
Sbjct: 61 RNPQTGKTIEIPASTVPAFKAGNKLKEAVK 90


>gi|34496809|ref|NP_901024.1| integration host factor subunit alpha [Chromobacterium violaceum
           ATCC 12472]
 gi|81711870|sp|Q7NYC0|IHFA_CHRVO RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|34102664|gb|AAQ59029.1| integration host factor alpha-subunit [Chromobacterium violaceum
           ATCC 12472]
          Length = 100

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 56/98 (57%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L   +  + GL+++++   V + F EI  +   G+++K+S F  F ++ K  R 
Sbjct: 2   TLTKAELADLLFDQVGLNKREAKDMVESFFEEIRLALESGDSVKLSGFGNFQLRDKPQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +E+ I  RRVV F AS  LK  +      ++
Sbjct: 62  GRNPKTGEEIPITARRVVTFHASQKLKGMVEQYHANKQ 99


>gi|332532267|ref|ZP_08408148.1| DNA-binding protein HU-beta [Pseudoalteromonas haloplanktis
          ANT/505]
 gi|332038365|gb|EGI74810.1| DNA-binding protein HU-beta [Pseudoalteromonas haloplanktis
          ANT/505]
          Length = 90

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R + +    +  +   G+++ +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDQIAADADISKAAAGRALDSFIESVSGALKDGDSVALVGFGTFSVRERAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++I    +  FKA   LK  + 
Sbjct: 61 RNPQTGETIQIAAATIPAFKAGKALKDAVN 90


>gi|292493201|ref|YP_003528640.1| integration host factor, subunit alpha [Nitrosococcus halophilus
           Nc4]
 gi|291581796|gb|ADE16253.1| integration host factor, alpha subunit [Nitrosococcus halophilus
           Nc4]
          Length = 100

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 59/98 (60%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++D+ +++ +E GL+++++   V   F +I  +  RGE +K+S F  F ++ KG R 
Sbjct: 2   ALTKADMTETLYQELGLNKREAKEIVEMFFEDIRCALERGETVKLSGFGNFELRDKGERP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +E+ I  RRVV F+    LK R+     G++
Sbjct: 62  GRNPKTGEEIPITARRVVTFRPGQKLKARVEAYAGGKQ 99


>gi|115375494|ref|ZP_01462754.1| integration host factor, alpha subunit [Stigmatella aurantiaca
           DW4/3-1]
 gi|310821386|ref|YP_003953744.1| integration host factor subunit alpha [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367537|gb|EAU66512.1| integration host factor, alpha subunit [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394458|gb|ADO71917.1| Integration host factor subunit alpha [Stigmatella aurantiaca
           DW4/3-1]
          Length = 134

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 36/103 (34%), Positives = 64/103 (62%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D+++ + ++ G S+K+S   V  +F+ + ++  RG+ IKIS F  F V+QK +RVG
Sbjct: 1   MTKADIIEGVYEKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARVG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           RN QT +E++I  RRV+ F+ S +LK  +  +       + D 
Sbjct: 61  RNPQTGKEIEISARRVLTFRPSQVLKSALNGEAPPENHAEIDA 103


>gi|86158392|ref|YP_465177.1| integration host factor subunit alpha [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|123723043|sp|Q2IJA7|IHFA_ANADE RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|85774903|gb|ABC81740.1| integration host factor, alpha subunit [Anaeromyxobacter
          dehalogenans 2CP-C]
          Length = 113

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 37/93 (39%), Positives = 62/93 (66%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+++S+ ++ G S+K++   V  +F+ I ++  RGE IKIS F  F V+ K SRVG
Sbjct: 1  MTKADIIESVYEKVGFSKKEAAEIVEMVFDTIKETLERGEKIKISGFGNFIVRDKKSRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          RN QT +E++I  RRV+ F+ S +LK  +   +
Sbjct: 61 RNPQTGEEIEISARRVLTFRPSQVLKNALNGGV 93


>gi|197122315|ref|YP_002134266.1| integration host factor subunit alpha [Anaeromyxobacter sp. K]
 gi|220917097|ref|YP_002492401.1| integration host factor, alpha subunit [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|226707369|sp|B4UAP1|IHFA_ANASK RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|254803509|sp|B8J836|IHFA_ANAD2 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|196172164|gb|ACG73137.1| integration host factor, alpha subunit [Anaeromyxobacter sp. K]
 gi|219954951|gb|ACL65335.1| integration host factor, alpha subunit [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 113

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 37/93 (39%), Positives = 63/93 (67%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+++S+ ++ G S+K++   V  +F+ I ++  RGE IKIS F  F V+ K SRVG
Sbjct: 1  MTKADIIESVYEKVGFSKKEAAEIVEMVFDTIKETLERGEKIKISGFGNFIVRDKKSRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          RN QT +E++I  RRV+ F+ S +LK  +  ++
Sbjct: 61 RNPQTGEEIEISARRVLTFRPSQVLKNALNGEV 93


>gi|170017043|ref|YP_001727962.1| nucleoid DNA-binding protein [Leuconostoc citreum KM20]
 gi|169803900|gb|ACA82518.1| Bacterial nucleoid DNA-binding protein [Leuconostoc citreum KM20]
          Length = 91

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 51/89 (57%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + +LV S++K  GL++KD+T  V  +F  I ++   GE +++  F  F V+ + +R GR
Sbjct: 3  NKQELVDSVAKATGLTKKDATASVDAVFASIEEALKNGEKVQLIGFGNFEVRDRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E++I   +V  FK    LK+ + 
Sbjct: 63 NPQTGAEIEIPASKVPAFKPGKALKEAVK 91


>gi|116491040|ref|YP_810584.1| nucleoid protein Hbs [Oenococcus oeni PSU-1]
 gi|290890520|ref|ZP_06553595.1| hypothetical protein AWRIB429_0985 [Oenococcus oeni AWRIB429]
 gi|116091765|gb|ABJ56919.1| bacterial nucleoid protein Hbs [Oenococcus oeni PSU-1]
 gi|290479916|gb|EFD88565.1| hypothetical protein AWRIB429_0985 [Oenococcus oeni AWRIB429]
          Length = 91

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 49/89 (55%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + +LV S++K   L++KD+T  V  +F+ I     +GE +++  F  F V+ + +R GR
Sbjct: 3  NKQELVDSVAKATDLTKKDATAAVDAVFDSIASYLKKGEKVQLIGFGNFEVRDRAARTGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E+KI   +V  FK    LK  + 
Sbjct: 63 NPQTGAEIKIPASKVPAFKPGKALKDTVK 91


>gi|332798190|ref|YP_004459689.1| histone family protein DNA-binding protein [Tepidanaerobacter sp.
          Re1]
 gi|332695925|gb|AEE90382.1| histone family protein DNA-binding protein [Tepidanaerobacter sp.
          Re1]
          Length = 91

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 55/91 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++ GL++KDS + +      + ++ V+ + +++  F TF V+++ SR G
Sbjct: 1  MNKAELITAMAEKSGLTKKDSEKALNAFIESVEEALVKRDKVQLVGFGTFEVRERSSRKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E+ I    +  FKA   LK  I +
Sbjct: 61 RNPQTGEEIDIPAASIPAFKAGKALKDSINN 91


>gi|226199688|ref|ZP_03795241.1| integration host factor alpha subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|225928274|gb|EEH24308.1| integration host factor alpha subunit [Burkholderia pseudomallei
           Pakistan 9]
          Length = 131

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 30  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 89

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS  LK  + + 
Sbjct: 90  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 124


>gi|90021230|ref|YP_527057.1| integration host factor subunit alpha [Saccharophagus degradans
          2-40]
 gi|123396256|sp|Q21KD4|IHFA_SACD2 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|89950830|gb|ABD80845.1| integration host factor, alpha subunit [Saccharophagus degradans
          2-40]
          Length = 101

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 55/94 (58%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS ++T++DL + + +E G +++++   V   F EI +S    E +K+S F  F ++ K 
Sbjct: 1  MSTSLTKADLAEKLYEELGFNKREAKELVEHFFEEIRNSLEDNEQVKLSGFGNFDLRDKK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           R GRN +T +E+ I  RRVV F+    LK R+ 
Sbjct: 61 QRPGRNPKTGEEIPITARRVVTFRPGQKLKARVE 94


>gi|288957866|ref|YP_003448207.1| integration host factor subunit alpha [Azospirillum sp. B510]
 gi|288910174|dbj|BAI71663.1| integration host factor subunit alpha [Azospirillum sp. B510]
          Length = 111

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 52/100 (52%), Positives = 72/100 (72%), Gaps = 1/100 (1%)

Query: 1   MSK-TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           MS+ T+TR+ L +++ +E GLSR +S   V T+ +EI D+  RGE +KISSF +F V+QK
Sbjct: 1   MSQNTVTRAQLSEAVYQEVGLSRNESADLVETVLDEISDALARGEMVKISSFGSFQVRQK 60

Query: 60  GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           G RVGRN +T +EV I PRRV+VF+AS +LK RI +   G
Sbjct: 61  GERVGRNPKTGEEVPILPRRVLVFRASHVLKHRINEVQEG 100


>gi|91784422|ref|YP_559628.1| integration host factor subunit alpha [Burkholderia xenovorans
           LB400]
 gi|296163121|ref|ZP_06845892.1| integration host factor, alpha subunit [Burkholderia sp. Ch1-1]
 gi|91688376|gb|ABE31576.1| Integration host factor, alpha subunit [Burkholderia xenovorans
           LB400]
 gi|295886623|gb|EFG66470.1| integration host factor, alpha subunit [Burkholderia sp. Ch1-1]
          Length = 136

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 54/98 (55%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   G+++K+S F  F ++ K  
Sbjct: 35  TPTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQ 94

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           R GRN +T + + I  RRVV F AS  LK  + +    
Sbjct: 95  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGAEA 132


>gi|126454482|ref|YP_001066011.1| integration host factor subunit alpha [Burkholderia pseudomallei
           1106a]
 gi|167845972|ref|ZP_02471480.1| integration host factor subunit alpha [Burkholderia pseudomallei
           B7210]
 gi|242316112|ref|ZP_04815128.1| integration host factor alpha subunit [Burkholderia pseudomallei
           1106b]
 gi|126228124|gb|ABN91664.1| integration host factor alpha subunit [Burkholderia pseudomallei
           1106a]
 gi|242139351|gb|EES25753.1| integration host factor alpha subunit [Burkholderia pseudomallei
           1106b]
          Length = 134

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 33  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS  LK  + + 
Sbjct: 93  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 127


>gi|76811001|ref|YP_333297.1| integration host factor subunit alpha [Burkholderia pseudomallei
           1710b]
 gi|167738844|ref|ZP_02411618.1| integration host factor subunit alpha [Burkholderia pseudomallei
           14]
 gi|167894550|ref|ZP_02481952.1| integration host factor subunit alpha [Burkholderia pseudomallei
           7894]
 gi|167911190|ref|ZP_02498281.1| integration host factor subunit alpha [Burkholderia pseudomallei
           112]
 gi|167919213|ref|ZP_02506304.1| integration host factor subunit alpha [Burkholderia pseudomallei
           BCC215]
 gi|254261246|ref|ZP_04952300.1| integration host factor alpha subunit [Burkholderia pseudomallei
           1710a]
 gi|254297833|ref|ZP_04965286.1| integration host factor alpha subunit [Burkholderia pseudomallei
           406e]
 gi|76580454|gb|ABA49929.1| integration host factor, alpha subunit [Burkholderia pseudomallei
           1710b]
 gi|157807473|gb|EDO84643.1| integration host factor alpha subunit [Burkholderia pseudomallei
           406e]
 gi|254219935|gb|EET09319.1| integration host factor alpha subunit [Burkholderia pseudomallei
           1710a]
          Length = 134

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 33  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS  LK  + + 
Sbjct: 93  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 127


>gi|121997363|ref|YP_001002150.1| integration host factor subunit beta [Halorhodospira halophila SL1]
 gi|166918550|sp|A1WUI6|IHFB_HALHL RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|121588768|gb|ABM61348.1| integration host factor, beta subunit [Halorhodospira halophila
           SL1]
          Length = 102

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 5   ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+++I+ K+  L+ KD    V  +   + ++   G+ I+I  F +F +  + +R+
Sbjct: 1   MTKSELIEAIASKQPHLAHKDVEDAVKKMLEHMSETLANGKRIEIRGFGSFSLHHRPARM 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           GRN +T + V +  + V  FK    L++R+            
Sbjct: 61  GRNPKTGEPVALPAKYVPHFKPGKELRERVNSSRHQAPLRSQ 102


>gi|254491603|ref|ZP_05104782.1| integration host factor, alpha subunit [Methylophaga thiooxidans
           DMS010]
 gi|224463081|gb|EEF79351.1| integration host factor, alpha subunit [Methylophaga thiooxydans
           DMS010]
          Length = 98

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 1/98 (1%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++D+ + +  E G +++++   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKADMTEQLYDELGFNKREAKELVEMFFEEIRSALENGEQVKLSGFGNFELRDKSERP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +E+ I  RRVV F+    LK R+ D+  G +
Sbjct: 62  GRNPKTGEEIPISARRVVTFRPGQKLKARV-DNYAGSE 98


>gi|54310488|ref|YP_131508.1| putative DNA-binding protein HU-alpha [Photobacterium profundum
          SS9]
 gi|46914931|emb|CAG21706.1| putative DNA-binding protein HU-alpha [Photobacterium profundum
          SS9]
          Length = 90

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +    I D+   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDQIAEKADLSKAQAKLALESTLEGITDALKDGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT QE++I    V  F +   LK  + 
Sbjct: 61 RNPQTGQEIQIAAANVPAFVSGKALKDALK 90


>gi|254188588|ref|ZP_04895099.1| integration host factor alpha subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157936267|gb|EDO91937.1| integration host factor alpha subunit [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 134

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 33  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS  LK  + + 
Sbjct: 93  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 127


>gi|146296415|ref|YP_001180186.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          saccharolyticus DSM 8903]
 gi|145409991|gb|ABP66995.1| bacterial nucleoid protein Hbs [Caldicellulosiruptor
          saccharolyticus DSM 8903]
          Length = 95

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 58/94 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++ +LVKSI+++ GL++KDS R +  L   I ++  +G+ +++  F TF VK++  R G
Sbjct: 1  MSKEELVKSIAEKSGLTKKDSERALNVLLECIQEALSKGDKVQLVGFGTFEVKERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN QT +E+ I    V +FKA   LK+ +    +
Sbjct: 61 RNPQTGEEILIPATVVPIFKAGKGLKEAVSSPAK 94


>gi|307544939|ref|YP_003897418.1| DNA-binding protein HU-beta [Halomonas elongata DSM 2581]
 gi|307216963|emb|CBV42233.1| K03530 DNA-binding protein HU-beta [Halomonas elongata DSM 2581]
          Length = 90

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I+    + +  ++R +  + + + DS  +G+++ +  F TF VK++ +R G
Sbjct: 1  MNKSELIEAIAASADIPKAAASRALDAMVDAVADSLKKGDSVSLVGFGTFTVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGEPIQISAAKVPSFKAGKALKDSVN 90


>gi|120554755|ref|YP_959106.1| histone family protein DNA-binding protein [Marinobacter
          aquaeolei VT8]
 gi|120324604|gb|ABM18919.1| bacterial nucleoid protein HU beta subunit [Marinobacter
          aquaeolei VT8]
 gi|311695073|gb|ADP97946.1| histone-like bacterial DNA-binding protein [marine bacterium
          HP15]
          Length = 90

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I++   +S+  + R +  + N I  +  +G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAESADISKAAAGRALDAMTNSITGALKKGDQVTLIGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E+KI   +V  FKA   LK  + 
Sbjct: 61 RNPQTGAEIKIPASKVPGFKAGKALKDAVK 90


>gi|160900042|ref|YP_001565624.1| integration host factor subunit alpha [Delftia acidovorans SPH-1]
 gi|226707373|sp|A9C3C8|IHFA_DELAS RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|160365626|gb|ABX37239.1| integration host factor, alpha subunit [Delftia acidovorans SPH-1]
          Length = 110

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 37/98 (37%), Positives = 56/98 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S  +T++ L   +  E GL++++S   V   F  I  S V GE +K+S F  F ++ K  
Sbjct: 10  SPALTKAQLADLLFDEIGLNKRESKEMVDAFFELISQSLVTGEDVKLSGFGNFQIRTKAP 69

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           R GRN +T + + I+ RRVV F ASS LK++I +   G
Sbjct: 70  RPGRNPRTGEAIPIEARRVVTFHASSKLKEQIQEGTTG 107


>gi|115351418|ref|YP_773257.1| integration host factor subunit alpha [Burkholderia ambifaria AMMD]
 gi|172060457|ref|YP_001808109.1| integration host factor subunit alpha [Burkholderia ambifaria
           MC40-6]
 gi|115281406|gb|ABI86923.1| integration host factor, alpha subunit [Burkholderia ambifaria
           AMMD]
 gi|171992974|gb|ACB63893.1| integration host factor, alpha subunit [Burkholderia ambifaria
           MC40-6]
          Length = 131

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 55/97 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 35  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 94

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           R GRN +T + + I  RRVV F AS  LK  + + + 
Sbjct: 95  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGVE 131


>gi|92114165|ref|YP_574093.1| histone-like DNA-binding protein [Chromohalobacter salexigens DSM
          3043]
 gi|91797255|gb|ABE59394.1| histone-like DNA-binding protein [Chromohalobacter salexigens DSM
          3043]
          Length = 90

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I+    + +  + R +  + + + DS  +G+++ +  F TF VK++ +R G
Sbjct: 1  MNKSELIEAIAASADIPKAAAGRALDAMVDTVTDSLKKGDSVALVGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT Q ++I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGQTIEISAAKVPTFKAGKALKDSVN 90


>gi|260582305|ref|ZP_05850098.1| integration host factor, beta subunit [Haemophilus influenzae
           NT127]
 gi|260094673|gb|EEW78568.1| integration host factor, beta subunit [Haemophilus influenzae
           NT127]
          Length = 116

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 48/92 (52%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           K + ++DL+ +I+    L++K +   +    + I  S   GE +++  F TF V ++ +R
Sbjct: 25  KFMNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAAR 84

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            GRN QT  E++I   +V  F +   LK  I 
Sbjct: 85  TGRNPQTGAEIQIAASKVPAFVSGKALKDAIK 116


>gi|50120090|ref|YP_049257.1| transcriptional regulator HU subunit beta [Pectobacterium
          atrosepticum SCRI1043]
 gi|227113468|ref|ZP_03827124.1| transcriptional regulator HU subunit beta [Pectobacterium
          carotovorum subsp. brasiliensis PBR1692]
 gi|227328851|ref|ZP_03832875.1| transcriptional regulator HU subunit beta [Pectobacterium
          carotovorum subsp. carotovorum WPP14]
 gi|253687446|ref|YP_003016636.1| histone family protein DNA-binding protein [Pectobacterium
          carotovorum subsp. carotovorum PC1]
 gi|261822504|ref|YP_003260610.1| transcriptional regulator HU subunit beta [Pectobacterium
          wasabiae WPP163]
 gi|49610616|emb|CAG74061.1| DNA-binding protein HU-beta [Pectobacterium atrosepticum
          SCRI1043]
 gi|251754024|gb|ACT12100.1| histone family protein DNA-binding protein [Pectobacterium
          carotovorum subsp. carotovorum PC1]
 gi|261606517|gb|ACX89003.1| histone family protein DNA-binding protein [Pectobacterium
          wasabiae WPP163]
          Length = 90

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R +  +   + +S   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAADADISKAAAGRVLDAIIGSVTESLKEGDDVALVGFGTFSVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F+A   LK  + 
Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKTLKDAVN 90


>gi|1573405|gb|AAC22089.1| DNA-binding protein HU-alpha (hupA) [Haemophilus influenzae Rd
           KW20]
          Length = 136

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 48/92 (52%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           K + ++DL+ +I+    L++K +   +    + I  S   GE +++  F TF V ++ +R
Sbjct: 45  KFMNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAAR 104

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            GRN QT  E++I   +V  F +   LK  I 
Sbjct: 105 TGRNPQTGAEIQIAASKVPAFVSGKALKDAIK 136


>gi|170701126|ref|ZP_02892100.1| integration host factor, alpha subunit [Burkholderia ambifaria
           IOP40-10]
 gi|171318448|ref|ZP_02907603.1| integration host factor, alpha subunit [Burkholderia ambifaria
           MEX-5]
 gi|170133948|gb|EDT02302.1| integration host factor, alpha subunit [Burkholderia ambifaria
           IOP40-10]
 gi|171096362|gb|EDT41264.1| integration host factor, alpha subunit [Burkholderia ambifaria
           MEX-5]
          Length = 128

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 55/97 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 32  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 91

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           R GRN +T + + I  RRVV F AS  LK  + + + 
Sbjct: 92  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGVE 128


>gi|187924726|ref|YP_001896368.1| integration host factor subunit alpha [Burkholderia phytofirmans
           PsJN]
 gi|187715920|gb|ACD17144.1| integration host factor, alpha subunit [Burkholderia phytofirmans
           PsJN]
          Length = 136

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 54/98 (55%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   G+++K+S F  F ++ K  
Sbjct: 35  TPTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQ 94

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           R GRN +T + + I  RRVV F AS  LK  + +    
Sbjct: 95  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGAEA 132


>gi|295704900|ref|YP_003597975.1| DNA-binding protein HU [Bacillus megaterium DSM 319]
 gi|294802559|gb|ADF39625.1| DNA-binding protein HU [Bacillus megaterium DSM 319]
          Length = 90

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ +  L+++D+ + V  LF  I ++    E I++  F TF V+++ +R G
Sbjct: 1  MKKAELIDAVATKSELTKQDTKKAVDALFETISNTLANEEKIQLIGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  FK    LK+ + 
Sbjct: 61 RNPQTGEEMTIPASKVPAFKPGKELKEALK 90


>gi|209695216|ref|YP_002263145.1| integration host factor subunit alpha [Aliivibrio salmonicida
          LFI1238]
 gi|226707367|sp|B6EN06|IHFA_ALISL RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|208009168|emb|CAQ79416.1| integration host factor alpha-subunit (IHF-alpha) [Aliivibrio
          salmonicida LFI1238]
          Length = 98

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 56/92 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ ++ GLS++D+   V   F EI  +   GE +K+S F  F +++K  R 
Sbjct: 2  ALTKADLAETLFEKVGLSKRDAKETVEVFFEEIKQALESGEQVKLSGFGNFDLREKSERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV FK    LK R+ D
Sbjct: 62 GRNPKTGEDIPISARRVVTFKPGQKLKARVED 93


>gi|37681329|ref|NP_935938.1| nucleoid DNA-binding protein [Vibrio vulnificus YJ016]
 gi|37200080|dbj|BAC95909.1| bacterial nucleoid DNA-binding protein [Vibrio vulnificus YJ016]
          Length = 101

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 46/93 (49%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
              + ++ L+  I+++  LS+  +   +    N + D+   G+ +++  F TF V  + +
Sbjct: 9   GNLMNKTQLIDFIAEKADLSKAQAKAALEATLNGVTDALKEGDQVQLIGFGTFKVNHRAA 68

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           R GRN +T  E++I    V  F A   LK+ + 
Sbjct: 69  RTGRNPKTGDEIQIAAANVPAFVAGKALKESVN 101


>gi|229018912|ref|ZP_04175755.1| DNA-binding protein HU [Bacillus cereus AH1273]
 gi|229098192|ref|ZP_04229139.1| DNA-binding protein HU [Bacillus cereus Rock3-29]
 gi|229104286|ref|ZP_04234955.1| DNA-binding protein HU [Bacillus cereus Rock3-28]
 gi|229117210|ref|ZP_04246588.1| DNA-binding protein HU [Bacillus cereus Rock1-3]
 gi|228666110|gb|EEL21574.1| DNA-binding protein HU [Bacillus cereus Rock1-3]
 gi|228678984|gb|EEL33192.1| DNA-binding protein HU [Bacillus cereus Rock3-28]
 gi|228685090|gb|EEL39021.1| DNA-binding protein HU [Bacillus cereus Rock3-29]
 gi|228742355|gb|EEL92512.1| DNA-binding protein HU [Bacillus cereus AH1273]
          Length = 93

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 58/92 (63%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K + +++L+K++++   +S+K++T  V T+   I ++   GE +++  F TF V+++ +R
Sbjct: 2  KNMNKTELIKNVAQNAEISQKEATVVVQTVVESITNALAAGEKVQLIGFGTFEVRERAAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E++I   +V  FKA   LK+ + 
Sbjct: 62 TGRNPQTGEEMQIAASKVPAFKAGKELKEAVK 93


>gi|188992772|ref|YP_001904782.1| histone-like protein [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167734532|emb|CAP52742.1| histone-like protein [Xanthomonas campestris pv. campestris]
          Length = 132

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 49/90 (54%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L+  ++    +S+ ++ R V  + +EI  +  +G+A+ +  F TF V+++  R G
Sbjct: 43  MNKTELIDGVAAAADISKAEAGRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERTG 102

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN +T   +KI   +   FKA   LK  + 
Sbjct: 103 RNPKTGDSIKIAASKNPAFKAGKALKDAVN 132


>gi|256823167|ref|YP_003147130.1| histone family protein DNA-binding protein [Kangiella koreensis
          DSM 16069]
 gi|256796706|gb|ACV27362.1| histone family protein DNA-binding protein [Kangiella koreensis
          DSM 16069]
          Length = 90

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    +S+  + R + ++   I DS  +GE + +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAAGADISKAAAGRALDSMLGAITDSLQKGEQVSLVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + ++I   +V  FKA   LK  + 
Sbjct: 61 RNPKTGETIQIKAAKVPGFKAGKALKDAVN 90


>gi|261403920|ref|YP_003240161.1| histone family protein DNA-binding protein [Paenibacillus sp.
          Y412MC10]
 gi|329925507|ref|ZP_08280381.1| DNA-binding protein HU-alpha [Paenibacillus sp. HGF5]
 gi|261280383|gb|ACX62354.1| histone family protein DNA-binding protein [Paenibacillus sp.
          Y412MC10]
 gi|328939790|gb|EGG36130.1| DNA-binding protein HU-alpha [Paenibacillus sp. HGF5]
          Length = 90

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +IS + GL++KD    +     EI ++   G+ +++  F TF  +++  R G
Sbjct: 1  MNKTDLINNISGKSGLTKKDVENVLNGFLGEITEALANGDKVQLIGFGTFETRKRAGRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   ++I    V  FKA + LK+ + 
Sbjct: 61 RNPQTGNTIEIPESNVPAFKAGNKLKEAVK 90


>gi|299821635|ref|ZP_07053523.1| DNA-binding protein HU [Listeria grayi DSM 20601]
 gi|299817300|gb|EFI84536.1| DNA-binding protein HU [Listeria grayi DSM 20601]
          Length = 112

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 52/89 (58%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
            ++DLV ++++   LS+KD+ + V  +F  I  S  +GE +++  F  F V+++ +R GR
Sbjct: 24  NKTDLVNNVAELADLSKKDAAKAVEAVFETIQTSLSKGEKVQLIGFGNFEVRERAARKGR 83

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N +T +E+ I   +V  FK    LK+ + 
Sbjct: 84  NPRTKEEIDIPASKVPAFKPGKALKEAVK 112


>gi|104773912|ref|YP_618892.1| histone-like DNA-binding protein [Lactobacillus delbrueckii
          subsp. bulgaricus ATCC 11842]
 gi|300812170|ref|ZP_07092614.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp.
          bulgaricus PB2003/044-T3-4]
 gi|313123538|ref|YP_004033797.1| histone-like DNA-binding protein [Lactobacillus delbrueckii
          subsp. bulgaricus ND02]
 gi|21633223|gb|AAM22485.1| HlbA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103422993|emb|CAI97675.1| Histone-like DNA-binding protein [Lactobacillus delbrueckii
          subsp. bulgaricus ATCC 11842]
 gi|300496855|gb|EFK31933.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp.
          bulgaricus PB2003/044-T3-4]
 gi|312280101|gb|ADQ60820.1| Histone-like DNA-binding protein [Lactobacillus delbrueckii
          subsp. bulgaricus ND02]
 gi|325684299|gb|EGD26472.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp. lactis
          DSM 20072]
          Length = 91

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 49/89 (55%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV  ++ +  L++KD +  V  +F  I +   +GE +++  F TF V+ + +R GR
Sbjct: 3  NKAELVSEVAAKTKLTKKDVSEAVDAVFEAIQEDLAKGEKVQLIGFGTFEVRDRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E++I   +V  FK    LK  + 
Sbjct: 63 NPQTGAEIEIPASKVPAFKPGKALKDAVK 91


>gi|170695990|ref|ZP_02887128.1| integration host factor, alpha subunit [Burkholderia graminis
           C4D1M]
 gi|307730396|ref|YP_003907620.1| integration host factor subunit alpha [Burkholderia sp. CCGE1003]
 gi|323526730|ref|YP_004228883.1| integration host factor subunit alpha [Burkholderia sp. CCGE1001]
 gi|170139070|gb|EDT07260.1| integration host factor, alpha subunit [Burkholderia graminis
           C4D1M]
 gi|307584931|gb|ADN58329.1| integration host factor, alpha subunit [Burkholderia sp. CCGE1003]
 gi|323383732|gb|ADX55823.1| integration host factor, alpha subunit [Burkholderia sp. CCGE1001]
          Length = 136

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 54/98 (55%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   G+++K+S F  F ++ K  
Sbjct: 35  TPTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQ 94

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           R GRN +T + + I  RRVV F AS  LK  + +    
Sbjct: 95  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGAEA 132


>gi|323498789|ref|ZP_08103775.1| nucleoid DNA-binding protein [Vibrio sinaloensis DSM 21326]
 gi|323316151|gb|EGA69176.1| nucleoid DNA-binding protein [Vibrio sinaloensis DSM 21326]
          Length = 90

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +    + + D+   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLDGVTDALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E++I    V  F A   LK  + 
Sbjct: 61 RNPKTGEEIQIAAANVPAFVAGKALKDAVK 90


>gi|167587357|ref|ZP_02379745.1| integration host factor subunit alpha [Burkholderia ubonensis Bu]
          Length = 133

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 54/102 (52%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 32  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 91

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           R GRN +T + + I  RRVV F AS  LK  + +        
Sbjct: 92  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGAEPSPAR 133


>gi|326795822|ref|YP_004313642.1| histone family protein DNA-binding protein [Marinomonas
          mediterranea MMB-1]
 gi|326546586|gb|ADZ91806.1| histone family protein DNA-binding protein [Marinomonas
          mediterranea MMB-1]
          Length = 90

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    LS+  ++  +      I ++ V+G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAASADLSKAAASNALDATLKTIEEALVKGDQVTLVGFGTFQVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGAEIQIKAAKVPSFKAGKGLKDAVN 90


>gi|254178583|ref|ZP_04885238.1| integration host factor alpha subunit [Burkholderia mallei ATCC
           10399]
 gi|160699622|gb|EDP89592.1| integration host factor alpha subunit [Burkholderia mallei ATCC
           10399]
          Length = 115

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 14  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 73

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS  LK  + + 
Sbjct: 74  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 108


>gi|56460110|ref|YP_155391.1| nucleoid DNA-binding protein HU-beta [Idiomarina loihiensis L2TR]
 gi|56179120|gb|AAV81842.1| Bacterial nucleoid DNA-binding protein HU-beta [Idiomarina
          loihiensis L2TR]
          Length = 90

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R + ++ + + D+  + + + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDSMIDAVTDALKKDDQVALVGFGTFSVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGETIQIAAAKVPSFKAGKALKDAVN 90


>gi|328543549|ref|YP_004303658.1| integration host factor subunit alpha [polymorphum gilvum
          SL003B-26A1]
 gi|326413293|gb|ADZ70356.1| Integration host factor subunit alpha [Polymorphum gilvum
          SL003B-26A1]
          Length = 104

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/96 (50%), Positives = 72/96 (75%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          S+TITR+DL +++ ++ GLSR +S+  V  + +EI D  V GE++K+SSF +F V+ KG 
Sbjct: 3  SRTITRADLCEAVYQKVGLSRTESSELVERVLSEISDCLVTGESVKLSSFGSFVVRSKGE 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          R+GRN +T +EV I PRRV+VFK S+ILK+RI + +
Sbjct: 63 RIGRNPKTGEEVPISPRRVMVFKPSNILKQRINESL 98


>gi|218848087|ref|YP_002454740.1| DNA-binding protein HU [Bacillus cereus G9842]
 gi|218546218|gb|ACK98611.1| DNA-binding protein HU [Bacillus cereus G9842]
          Length = 90

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+K +++   L++KD++     + + I ++ + GE +++  F TF V+++ +R G
Sbjct: 1  MNKTALIKHVAEHTELTQKDASAATQAVLDTITEALMNGEKVQLIGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGEEMHIAASKVPAFKAGKELKVAVK 90


>gi|1094409|prf||2106156A DNA-binding protein HU
          Length = 90

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 56/91 (61%), Gaps = 2/91 (2%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++  GLS+KD+T+ V  +F+ I ++  +G+ +++  F  F  +++ +R G
Sbjct: 1  MNKTELINAVAETSGLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFE-RERAARKG 59

Query: 65 R-NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          R N QT +E++I   +V  FK    LK  + 
Sbjct: 60 RVNPQTGEEMEIPASKVPAFKPGKALKDAVK 90


>gi|302876598|ref|YP_003845231.1| histone family protein DNA-binding protein [Clostridium
          cellulovorans 743B]
 gi|307687272|ref|ZP_07629718.1| histone family protein DNA-binding protein [Clostridium
          cellulovorans 743B]
 gi|302579455|gb|ADL53467.1| histone family protein DNA-binding protein [Clostridium
          cellulovorans 743B]
          Length = 91

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 53/91 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ SI+++ GL++KD+   +      I ++  + E +++  F TF VK++  R G
Sbjct: 1  MNKTELISSIAEKSGLTKKDAEAALKGFMESIQEALEKKEKVQLVGFGTFEVKERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T +E+KI    V  FKA   LK R+  
Sbjct: 61 RNPRTKEEIKIPASSVPSFKAGKELKDRVNK 91


>gi|228961970|ref|ZP_04123500.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228797708|gb|EEM44791.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani
          str. T13001]
          Length = 91

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++ + GL +  ++  V TL   I  +   G+ +++  F TF V+++ +R G
Sbjct: 1  MNKTELITQVAVKTGLKKSQASLAVDTLLESIQQALQNGDNVQLLGFGTFEVRERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T + + I  ++   FKA  +LK+ + +
Sbjct: 61 RNPSTGESLVIPAKKAPAFKAGKVLKEAVNN 91


>gi|254486218|ref|ZP_05099423.1| integration host factor, alpha subunit [Roseobacter sp. GAI101]
 gi|214043087|gb|EEB83725.1| integration host factor, alpha subunit [Roseobacter sp. GAI101]
          Length = 110

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/96 (45%), Positives = 70/96 (72%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR DL +++ +E GLSR +S + V ++ + + D+ V+GE +KISSF TF V++K +R
Sbjct: 14  KTLTRMDLSEAVFREVGLSRNESAQLVESVLDHMSDALVQGEQVKISSFGTFSVREKSAR 73

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           VGRN +T +EV I+PRRV+ F+ S ++K R+ D  +
Sbjct: 74  VGRNPKTGEEVPINPRRVLTFRPSHLMKDRVADGNK 109


>gi|290476984|ref|YP_003469895.1| DNA-binding protein HU-alpha [Xenorhabdus bovienii SS-2004]
 gi|289176328|emb|CBJ83133.1| DNA-binding protein HU-alpha (HU-2), plays a role in DNA
          replication and in rpo translation [Xenorhabdus
          bovienii SS-2004]
          Length = 90

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+++ GL++  +   + +  N I +S   G+++++  F TF V  +  R G
Sbjct: 1  MNKTELVDAIAEQAGLTKTQAKTALESTLNAITESLRNGDSVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E+KI    V  F A   LK  + 
Sbjct: 61 RNPQTGNEIKIAAANVPAFSAGKALKDAVK 90


>gi|225181422|ref|ZP_03734865.1| histone family protein DNA-binding protein [Dethiobacter
          alkaliphilus AHT 1]
 gi|225167820|gb|EEG76628.1| histone family protein DNA-binding protein [Dethiobacter
          alkaliphilus AHT 1]
          Length = 90

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 55/90 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ ++++  GL++KD+ + V  +F+ I D+  +G+ +++  F TF V+++ +R G
Sbjct: 1  MNKSELISNVAENAGLTKKDTEKVVNAIFDTIGDALAKGDKVQVIGFGTFDVRERKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T   + I   +V VFKA   LK  + 
Sbjct: 61 RNPATGDTITIPAVKVPVFKAGKALKDTVK 90


>gi|77164655|ref|YP_343180.1| integration host factor subunit alpha [Nitrosococcus oceani ATCC
           19707]
 gi|254434600|ref|ZP_05048108.1| integration host factor, alpha subunit [Nitrosococcus oceani AFC27]
 gi|123594551|sp|Q3JBZ6|IHFA_NITOC RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|76882969|gb|ABA57650.1| Integration host factor, alpha subunit [Nitrosococcus oceani ATCC
           19707]
 gi|207090933|gb|EDZ68204.1| integration host factor, alpha subunit [Nitrosococcus oceani AFC27]
          Length = 99

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 60/98 (61%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++D+ +++ +E GL+++++   V   F +I  +  +GEA+K+S F  F ++ KG R 
Sbjct: 2   ALTKADMTETLYQELGLNKREAKEIVEMFFEDIRCALEQGEAVKLSGFGNFELRDKGERP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +E+ I  RRVV F+    LK R+     G++
Sbjct: 62  GRNPKTGEEIPITARRVVTFRPGQKLKARVEAYAGGKQ 99


>gi|237808480|ref|YP_002892920.1| integration host factor, alpha subunit [Tolumonas auensis DSM 9187]
 gi|259491534|sp|C4LFG7|IHFA_TOLAT RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|237500741|gb|ACQ93334.1| integration host factor, alpha subunit [Tolumonas auensis DSM 9187]
          Length = 106

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 56/103 (54%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++D+ + +  E G+S++D+   V T F +I  +   GE +KIS F  F ++ K  R 
Sbjct: 2   ALTKADIAEHLFTELGISKRDAKELVETFFEDIRLALESGEQVKISGFGNFELRTKNERP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN +T +++ I  RRVV F+    LK R+       + + D 
Sbjct: 62  GRNPKTGEDIPITARRVVTFRPGQKLKSRVEHARPVDEADDDG 104


>gi|167750745|ref|ZP_02422872.1| hypothetical protein EUBSIR_01723 [Eubacterium siraeum DSM 15702]
 gi|167656180|gb|EDS00310.1| hypothetical protein EUBSIR_01723 [Eubacterium siraeum DSM 15702]
          Length = 105

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 56/91 (61%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+++LV  ++++  L++KD+ + ++ L   I ++  +GE I++  F TF V+++ +R G
Sbjct: 15  MTKAELVTMVAEKADLTKKDAEKAISALVESISETLAKGEKIQLVGFGTFEVRERAAREG 74

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            N +T  ++KI   +V  FKA S LK  +  
Sbjct: 75  VNPRTGDKIKIAASKVPAFKAGSALKDAVAK 105


>gi|325288394|ref|YP_004264575.1| bacterial nucleoid protein Hbs [Syntrophobotulus glycolicus DSM
          8271]
 gi|324963795|gb|ADY54574.1| bacterial nucleoid protein Hbs [Syntrophobotulus glycolicus DSM
          8271]
          Length = 90

 Score =  135 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++   ++KD+ + V  +   I  +   G+ +++  F TF VK++  RVG
Sbjct: 1  MNKAELVSAVAEKIDFTKKDAEKAVAAVIETISQALAAGDKVQLVGFGTFEVKKREERVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I    V  FKA   LK  + 
Sbjct: 61 RNPQTKEEIIIPACNVPGFKAGKALKDAVQ 90


>gi|255318959|ref|ZP_05360184.1| DNA-binding protein HU-beta [Acinetobacter radioresistens SK82]
 gi|262378305|ref|ZP_06071462.1| integration host factor, beta subunit [Acinetobacter
          radioresistens SH164]
 gi|255303976|gb|EET83168.1| DNA-binding protein HU-beta [Acinetobacter radioresistens SK82]
 gi|262299590|gb|EEY87502.1| integration host factor, beta subunit [Acinetobacter
          radioresistens SH164]
          Length = 90

 Score =  135 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+++ GLS+ D+ + +      I ++  +G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAEKGGLSKTDAGKALDATIASITEALKQGDTVTLVGFGTFGVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E++I   +V  FKA   LK  + 
Sbjct: 61 RNPKTGEELQIKASKVPSFKAGKGLKDSVA 90


>gi|156935007|ref|YP_001438923.1| transcriptional regulator HU subunit beta [Cronobacter sakazakii
          ATCC BAA-894]
 gi|156533261|gb|ABU78087.1| hypothetical protein ESA_02858 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 90

 Score =  135 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  L + + +S   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDALIDSVTESLQSGDEVALVGFGTFSVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F+A   LK  + 
Sbjct: 61 RNPQTGKEITIAAAKVPGFRAGKALKDAVN 90


>gi|325528721|gb|EGD05791.1| integration host factor subunit alpha [Burkholderia sp. TJI49]
          Length = 131

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 35  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 94

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS  LK  + + 
Sbjct: 95  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 129


>gi|229168463|ref|ZP_04296186.1| DNA-binding protein HU [Bacillus cereus AH621]
 gi|228614869|gb|EEK71971.1| DNA-binding protein HU [Bacillus cereus AH621]
          Length = 93

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 58/92 (63%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K + +++L+K++++   +S+K++T  + T+   I +S   GE +++  F TF V+++ +R
Sbjct: 2  KNMNKTELIKNVAQNAEISQKEATVVLQTVVESITNSLAAGEKVQLIGFGTFEVRERAAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E++I   +V  FKA   LK+ + 
Sbjct: 62 TGRNPQTGEEMQIAASKVPAFKAGKELKEAVK 93


>gi|227873321|ref|ZP_03991583.1| DNA-binding protein HU [Oribacterium sinus F0268]
 gi|227840836|gb|EEJ51204.1| DNA-binding protein HU [Oribacterium sinus F0268]
          Length = 90

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLV +++K+  LS+KD+   V  +F+ I ++  +G+ +++  F TF V ++ +R G
Sbjct: 1  MNKVDLVSAVAKQAELSKKDAGLAVEAVFDAISEALEKGDKVQLIGFGTFDVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + +KI   +   FKA   LK R+ 
Sbjct: 61 RNPRTGETMKIAASKAPRFKAGKALKDRVN 90


>gi|261252635|ref|ZP_05945208.1| integration host factor alpha subunit [Vibrio orientalis CIP
          102891]
 gi|260936026|gb|EEX92015.1| integration host factor alpha subunit [Vibrio orientalis CIP
          102891]
          Length = 98

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 54/92 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ ++ G S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAENLFEKLGYSKRDAKETVEAFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVEN 93


>gi|307545110|ref|YP_003897589.1| integration host factor subunit alpha [Halomonas elongata DSM 2581]
 gi|307217134|emb|CBV42404.1| integration host factor subunit alpha [Halomonas elongata DSM 2581]
          Length = 122

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 51/91 (56%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T+++L + +  E GLS++++   V + F EI       E +K+S F  F ++ K  R 
Sbjct: 25  ALTKAELAEHLHAELGLSKREAKSMVESFFEEIRGCLRENEQVKLSGFGNFDLRDKRERP 84

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN +T +E+ I  RRVV F+    LK ++ 
Sbjct: 85  GRNPKTGEEIPISARRVVTFRPGQKLKSQVE 115


>gi|192361986|ref|YP_001982984.1| integration host factor subunit alpha [Cellvibrio japonicus
          Ueda107]
 gi|190688151|gb|ACE85829.1| integration host factor, alpha subunit [Cellvibrio japonicus
          Ueda107]
          Length = 102

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 52/91 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL + + ++ GL+++++   V   F EI  +    E +K+S F  F ++ K  R 
Sbjct: 5  ALTKADLAEKLYEDLGLNKREAKELVELFFEEIRQALENNEEVKLSGFGNFELRDKSQRP 64

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  RRVV F+    LK R+ 
Sbjct: 65 GRNPKTGEEIPISARRVVTFRPGQKLKARVE 95


>gi|53719552|ref|YP_108538.1| integration host factor subunit alpha [Burkholderia pseudomallei
           K96243]
 gi|81690335|sp|Q63TM8|IHFA_BURPS RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|52209966|emb|CAH35938.1| integration host factor alpha-subunit [Burkholderia pseudomallei
           K96243]
          Length = 115

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 14  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 73

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS  LK  + + 
Sbjct: 74  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 108


>gi|229829761|ref|ZP_04455830.1| hypothetical protein GCWU000342_01858 [Shuttleworthia satelles DSM
           14600]
 gi|229791750|gb|EEP27864.1| hypothetical protein GCWU000342_01858 [Shuttleworthia satelles DSM
           14600]
          Length = 122

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 51/91 (56%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++LV +I+++  LS+KD+   +    + +  S  +GE I++  F TF V ++ +R G
Sbjct: 32  MNKTELVAAIAEQADLSKKDAEAALKAFTDVVSKSLKKGEKIQLVGFGTFEVSKRSARTG 91

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN QT + +KI   +   FKA   LK  +  
Sbjct: 92  RNPQTGKTMKIAASKAPKFKAGKALKDAVNK 122


>gi|319762546|ref|YP_004126483.1| integration host factor, beta subunit [Alicycliphilus
          denitrificans BC]
 gi|330824563|ref|YP_004387866.1| integration host factor subunit beta [Alicycliphilus
          denitrificans K601]
 gi|317117107|gb|ADU99595.1| integration host factor, beta subunit [Alicycliphilus
          denitrificans BC]
 gi|329309935|gb|AEB84350.1| integration host factor, beta subunit [Alicycliphilus
          denitrificans K601]
          Length = 100

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDLV+ ++  FG L+++D+   V T+ + + D+ VRG  I+I  F +F V  +  R+
Sbjct: 1  MTRSDLVEELAARFGQLTQRDAEYAVKTILDAVSDALVRGHRIEIRGFGSFSVSHRPPRM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V I  +RV  FK    L++ +
Sbjct: 61 GRNPRSGEAVHIPEKRVPHFKPGKALREAV 90


>gi|254465016|ref|ZP_05078427.1| integration host factor, alpha subunit [Rhodobacterales bacterium
           Y4I]
 gi|206685924|gb|EDZ46406.1| integration host factor, alpha subunit [Rhodobacterales bacterium
           Y4I]
          Length = 100

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/97 (47%), Positives = 67/97 (69%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR DL +++ +E GLSR +S + V ++   + D+ VRGE +KISSF TF V+ K +R
Sbjct: 4   KTLTRMDLSEAVFREVGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDKSAR 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           VGRN +T +EV I PRRV+ F+ S ++K R+ D  R 
Sbjct: 64  VGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVADGNRN 100


>gi|300114468|ref|YP_003761043.1| integration host factor subunit alpha [Nitrosococcus watsonii
           C-113]
 gi|299540405|gb|ADJ28722.1| integration host factor, alpha subunit [Nitrosococcus watsonii
           C-113]
          Length = 99

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 59/98 (60%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++D+ + + +E GL+++++   V   F +I  +  +GEA+K+S F  F ++ KG R 
Sbjct: 2   ALTKADMTEILYQELGLNKREAKEIVEMFFEDIRCALEQGEAVKLSGFGNFELRDKGERP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +E+ I  RRVV F+    LK R+     G++
Sbjct: 62  GRNPKTGEEIPITARRVVTFRPGQKLKARVEAYAGGKQ 99


>gi|149202720|ref|ZP_01879692.1| integration host factor, alpha subunit [Roseovarius sp. TM1035]
 gi|149144002|gb|EDM32036.1| integration host factor, alpha subunit [Roseovarius sp. TM1035]
          Length = 100

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/96 (47%), Positives = 68/96 (70%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL ++I +E GLSR D+ + V ++   + D+ VRGE +KISSF TF V+ K +R
Sbjct: 4  KTLTRMDLSEAIFREVGLSRNDAAQLVESVLGHMSDALVRGEQVKISSFGTFSVRDKTAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          VGRN +T +EV I+PRRV+ F+ S ++K R+ D  +
Sbjct: 64 VGRNPKTGEEVPINPRRVLTFRPSHLMKDRVADGTK 99


>gi|257455234|ref|ZP_05620469.1| DNA-binding protein HU-beta [Enhydrobacter aerosaccus SK60]
 gi|257447196|gb|EEV22204.1| DNA-binding protein HU-beta [Enhydrobacter aerosaccus SK60]
          Length = 90

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV SI+K+ GLS+  ST  +      I ++    + + +  F TF VK++ +R G
Sbjct: 1  MNKSELVDSIAKKSGLSKAQSTEALNAFIATIGEAMKANDTVSLVGFGTFSVKERQARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FKA   LK  + 
Sbjct: 61 RNPQTKEEIQIPASKVPSFKAGKSLKDMVN 90


>gi|154253364|ref|YP_001414188.1| integration host factor subunit alpha [Parvibaculum lavamentivorans
           DS-1]
 gi|154157314|gb|ABS64531.1| integration host factor, alpha subunit [Parvibaculum
           lavamentivorans DS-1]
          Length = 105

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/105 (43%), Positives = 68/105 (64%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           M +T+TR+ L +++ +E GLSR +S   V  +  EI D   RG+ +K+SSF +F V++KG
Sbjct: 1   MGETVTRAQLSEAVYQEVGLSRNESAELVELVLAEISDCLARGDTVKLSSFGSFSVRKKG 60

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
            R+GRN +T +EV I PRRV+VF+ S +LK+RI     G     D
Sbjct: 61  GRMGRNPKTGEEVPIKPRRVLVFRPSHVLKERINGSSGGASAAAD 105


>gi|261367126|ref|ZP_05980009.1| DNA-binding protein HU [Subdoligranulum variabile DSM 15176]
 gi|282571249|gb|EFB76784.1| DNA-binding protein HU [Subdoligranulum variabile DSM 15176]
          Length = 90

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +L+ +++ E  L++KD+ + V T  N I ++   G+ + +  F TF V+++ +R G
Sbjct: 1  MTKVELIAAVANEANLTKKDAEQAVNTALNAITEALKNGDKVTLVGFGTFEVRERPARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E+ I+  ++  FKA   LK  + 
Sbjct: 61 RNPQTGAEITIEASKLPAFKAGKALKDAVQ 90


>gi|78066092|ref|YP_368861.1| integration host factor subunit alpha [Burkholderia sp. 383]
 gi|107022554|ref|YP_620881.1| integration host factor subunit alpha [Burkholderia cenocepacia AU
           1054]
 gi|116689503|ref|YP_835126.1| integration host factor subunit alpha [Burkholderia cenocepacia
           HI2424]
 gi|170732808|ref|YP_001764755.1| integration host factor subunit alpha [Burkholderia cenocepacia
           MC0-3]
 gi|206559853|ref|YP_002230617.1| integration host factor subunit alpha [Burkholderia cenocepacia
           J2315]
 gi|254245604|ref|ZP_04938925.1| Integration host factor alpha subunit [Burkholderia cenocepacia
           PC184]
 gi|254252552|ref|ZP_04945870.1| Integration host factor alpha subunit [Burkholderia dolosa AUO158]
 gi|77966837|gb|ABB08217.1| Integration host factor, alpha subunit [Burkholderia sp. 383]
 gi|105892743|gb|ABF75908.1| integration host factor, alpha subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647592|gb|ABK08233.1| integration host factor, alpha subunit [Burkholderia cenocepacia
           HI2424]
 gi|124870380|gb|EAY62096.1| Integration host factor alpha subunit [Burkholderia cenocepacia
           PC184]
 gi|124895161|gb|EAY69041.1| Integration host factor alpha subunit [Burkholderia dolosa AUO158]
 gi|169816050|gb|ACA90633.1| integration host factor, alpha subunit [Burkholderia cenocepacia
           MC0-3]
 gi|198035894|emb|CAR51786.1| integration host factor alpha-subunit [Burkholderia cenocepacia
           J2315]
          Length = 131

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 35  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 94

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS  LK  + + 
Sbjct: 95  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 129


>gi|89900136|ref|YP_522607.1| integration host factor subunit alpha [Rhodoferax ferrireducens
          T118]
 gi|123091398|sp|Q21YS7|IHFA_RHOFD RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|89344873|gb|ABD69076.1| integration host factor, alpha subunit [Rhodoferax ferrireducens
          T118]
          Length = 102

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 56/93 (60%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            +T++ L + + ++ GL++++S   V   F+ + DS ++GE +KIS F  F ++ K  R
Sbjct: 2  PALTKAQLAELLFEKIGLNKRESKDMVDAFFDLVADSLLKGEDVKISGFGNFQIRTKAPR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           GRN +T + + I  RRVV F A   LK++I D
Sbjct: 62 PGRNPRTGETIPIQARRVVTFHAGYKLKEQIQD 94


>gi|28198389|ref|NP_778703.1| histone-like protein [Xylella fastidiosa Temecula1]
 gi|182681031|ref|YP_001829191.1| histone family protein DNA-binding protein [Xylella fastidiosa
          M23]
 gi|32129475|sp|Q87E48|DBH_XYLFT RecName: Full=DNA-binding protein HU
 gi|28056459|gb|AAO28352.1| histone-like protein [Xylella fastidiosa Temecula1]
 gi|182631141|gb|ACB91917.1| histone family protein DNA-binding protein [Xylella fastidiosa
          M23]
 gi|307579499|gb|ADN63468.1| histone family protein DNA-binding protein [Xylella fastidiosa
          subsp. fastidiosa GB514]
          Length = 94

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 47/92 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++    LS+ ++ R +  + NEI ++   G+++ +  F TF V+Q+  R G
Sbjct: 1  MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKEGDSVTLVGFGTFQVRQRAERPG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T + + I       FK    LK  +   
Sbjct: 61 RNPKTGEPIMIAASNNPSFKPGKALKDAVKSS 92


>gi|87121305|ref|ZP_01077195.1| DNA-binding protein HU-beta [Marinomonas sp. MED121]
 gi|86163462|gb|EAQ64737.1| DNA-binding protein HU-beta [Marinomonas sp. MED121]
          Length = 90

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    LS+  +   +      I  +  +G+ + +  F TF VK + +R G
Sbjct: 1  MNKSELIDAIAASADLSKAAAGNALDATLEAITGALAKGDQVTLVGFGTFAVKDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGEEIAIKAAKVPGFKAGKGLKDSVN 90


>gi|109899438|ref|YP_662693.1| histone-like DNA-binding protein [Pseudoalteromonas atlantica
          T6c]
 gi|332305577|ref|YP_004433428.1| histone family protein DNA-binding protein [Glaciecola
          agarilytica 4H-3-7+YE-5]
 gi|109701719|gb|ABG41639.1| histone-like DNA-binding protein [Pseudoalteromonas atlantica
          T6c]
 gi|332172906|gb|AEE22160.1| histone family protein DNA-binding protein [Glaciecola
          agarilytica 4H-3-7+YE-5]
          Length = 90

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 46/88 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  S R +  L + I  +   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDQIAASADISKAASGRALDALTDAITAALKEGDQVALVGFGTFSVRERAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN QT + ++I   +V  FKA   LK  
Sbjct: 61 RNPQTGETIQISAAKVPSFKAGKALKDA 88


>gi|134295553|ref|YP_001119288.1| integration host factor subunit alpha [Burkholderia vietnamiensis
           G4]
 gi|134138710|gb|ABO54453.1| integration host factor, alpha subunit [Burkholderia vietnamiensis
           G4]
          Length = 128

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 32  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 91

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS  LK  + + 
Sbjct: 92  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 126


>gi|262372261|ref|ZP_06065540.1| integration host factor, beta subunit [Acinetobacter junii SH205]
 gi|262312286|gb|EEY93371.1| integration host factor, beta subunit [Acinetobacter junii SH205]
          Length = 90

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+++ G+S+ D+ + +      I ++  +G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAEKGGVSKSDAGKALDATIASITEALKKGDTVTLVGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E++I   +V  FK    LK  + 
Sbjct: 61 RNPKTGEELQIKASKVPSFKPGKGLKDSVA 90


>gi|323493296|ref|ZP_08098420.1| Integration host factor, alpha subunit [Vibrio brasiliensis LMG
          20546]
 gi|323312459|gb|EGA65599.1| Integration host factor, alpha subunit [Vibrio brasiliensis LMG
          20546]
          Length = 98

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 54/92 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ ++ G S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAENLFEKLGYSKRDAKETVEAFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVEN 93


>gi|253996949|ref|YP_003049013.1| integration host factor subunit alpha [Methylotenera mobilis
          JLW8]
 gi|253983628|gb|ACT48486.1| integration host factor, alpha subunit [Methylotenera mobilis
          JLW8]
          Length = 97

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 57/93 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+++L   + ++ GL+++++   V   F E+  +   G+++K+S F  F ++QK  R 
Sbjct: 2  TLTKAELADLLYEQVGLNKREAKDMVEAFFEEVRTALEAGDSVKLSGFGNFELRQKSERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +E+ I  RRVV F AS  LK ++  +
Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKSKVDAN 94


>gi|171058434|ref|YP_001790783.1| integration host factor subunit alpha [Leptothrix cholodnii SP-6]
 gi|170775879|gb|ACB34018.1| integration host factor, alpha subunit [Leptothrix cholodnii SP-6]
          Length = 113

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 11/113 (9%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + + +  GL++++S   V   F+ I ++ VRGE +K+S F  F V++K  
Sbjct: 11  TPTLTKAELAELLFERLGLNKRESKDMVEAYFDFIHEALVRGEDVKLSGFGNFQVRRKAP 70

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY 114
           R GRN +T + + I  R VV F AS  LK  +  +           T P G +
Sbjct: 71  RPGRNPRTGEAIPIRARNVVTFHASHKLKAIVQGE-----------TPPPGEF 112


>gi|118478949|ref|YP_896100.1| HU family DNA-binding protein [Bacillus thuringiensis str. Al
          Hakam]
 gi|228902230|ref|ZP_04066390.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222]
 gi|228909551|ref|ZP_04073374.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
 gi|228916359|ref|ZP_04079928.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis
          BGSC 4CC1]
 gi|228935026|ref|ZP_04097856.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228940802|ref|ZP_04103362.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228947391|ref|ZP_04109682.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228954004|ref|ZP_04116033.1| DNA-binding protein HU [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
 gi|228959936|ref|ZP_04121601.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228966650|ref|ZP_04127696.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str.
          T04001]
 gi|228973722|ref|ZP_04134300.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228980278|ref|ZP_04140589.1| DNA-binding protein HU [Bacillus thuringiensis Bt407]
 gi|228986865|ref|ZP_04146992.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|229031353|ref|ZP_04187356.1| DNA-binding protein HU [Bacillus cereus AH1271]
 gi|229047408|ref|ZP_04193002.1| DNA-binding protein HU [Bacillus cereus AH676]
 gi|229071224|ref|ZP_04204448.1| DNA-binding protein HU [Bacillus cereus F65185]
 gi|229080981|ref|ZP_04213494.1| DNA-binding protein HU [Bacillus cereus Rock4-2]
 gi|229092762|ref|ZP_04223900.1| DNA-binding protein HU [Bacillus cereus Rock3-42]
 gi|229111199|ref|ZP_04240753.1| DNA-binding protein HU [Bacillus cereus Rock1-15]
 gi|229123244|ref|ZP_04252448.1| DNA-binding protein HU [Bacillus cereus 95/8201]
 gi|229129004|ref|ZP_04257977.1| DNA-binding protein HU [Bacillus cereus BDRD-Cer4]
 gi|229140371|ref|ZP_04268926.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26]
 gi|229146298|ref|ZP_04274670.1| DNA-binding protein HU [Bacillus cereus BDRD-ST24]
 gi|229151928|ref|ZP_04280124.1| DNA-binding protein HU [Bacillus cereus m1550]
 gi|229180004|ref|ZP_04307348.1| DNA-binding protein HU [Bacillus cereus 172560W]
 gi|229185956|ref|ZP_04313127.1| DNA-binding protein HU [Bacillus cereus BGSC 6E1]
 gi|229191850|ref|ZP_04318821.1| DNA-binding protein HU [Bacillus cereus ATCC 10876]
 gi|229197835|ref|ZP_04324551.1| DNA-binding protein HU [Bacillus cereus m1293]
 gi|118418174|gb|ABK86593.1| HU family DNA-binding protein [Bacillus thuringiensis str. Al
          Hakam]
 gi|228585553|gb|EEK43655.1| DNA-binding protein HU [Bacillus cereus m1293]
 gi|228591612|gb|EEK49460.1| DNA-binding protein HU [Bacillus cereus ATCC 10876]
 gi|228597508|gb|EEK55157.1| DNA-binding protein HU [Bacillus cereus BGSC 6E1]
 gi|228603213|gb|EEK60690.1| DNA-binding protein HU [Bacillus cereus 172560W]
 gi|228631483|gb|EEK88116.1| DNA-binding protein HU [Bacillus cereus m1550]
 gi|228637172|gb|EEK93630.1| DNA-binding protein HU [Bacillus cereus BDRD-ST24]
 gi|228642932|gb|EEK99208.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26]
 gi|228654241|gb|EEL10106.1| DNA-binding protein HU [Bacillus cereus BDRD-Cer4]
 gi|228660020|gb|EEL15656.1| DNA-binding protein HU [Bacillus cereus 95/8201]
 gi|228672193|gb|EEL27483.1| DNA-binding protein HU [Bacillus cereus Rock1-15]
 gi|228690560|gb|EEL44341.1| DNA-binding protein HU [Bacillus cereus Rock3-42]
 gi|228702295|gb|EEL54768.1| DNA-binding protein HU [Bacillus cereus Rock4-2]
 gi|228711845|gb|EEL63796.1| DNA-binding protein HU [Bacillus cereus F65185]
 gi|228723937|gb|EEL75288.1| DNA-binding protein HU [Bacillus cereus AH676]
 gi|228729963|gb|EEL80940.1| DNA-binding protein HU [Bacillus cereus AH1271]
 gi|228772814|gb|EEM21253.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228779383|gb|EEM27639.1| DNA-binding protein HU [Bacillus thuringiensis Bt407]
 gi|228785968|gb|EEM33969.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228793026|gb|EEM40582.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str.
          T04001]
 gi|228799679|gb|EEM46631.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228805570|gb|EEM52160.1| DNA-binding protein HU [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
 gi|228812244|gb|EEM58574.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228818816|gb|EEM64881.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228824596|gb|EEM70398.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228843269|gb|EEM88348.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis
          BGSC 4CC1]
 gi|228849840|gb|EEM94671.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
 gi|228857345|gb|EEN01845.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222]
          Length = 93

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 58/92 (63%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K + +++L+K++++   +S+K++T  V T+   I ++   GE +++  F TF V+++ +R
Sbjct: 2  KNMNKTELIKNVAQNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E++I   +V  FKA   LK+ + 
Sbjct: 62 TGRNPQTGEEMQIAASKVPAFKAGKELKEAVK 93


>gi|260887856|ref|ZP_05899119.1| DNA-binding protein HU [Selenomonas sputigena ATCC 35185]
 gi|330838724|ref|YP_004413304.1| histone family protein DNA-binding protein [Selenomonas sputigena
          ATCC 35185]
 gi|260862362|gb|EEX76862.1| DNA-binding protein HU [Selenomonas sputigena ATCC 35185]
 gi|329746488|gb|AEB99844.1| histone family protein DNA-binding protein [Selenomonas sputigena
          ATCC 35185]
          Length = 92

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 56/91 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ GLS+K + + +  +   I ++ V G+ +++  F TF VK + +R G
Sbjct: 1  MNKTELVANVAEKAGLSKKVAEQALGAIIESIEEALVEGDKVQLIGFGTFEVKDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E+KI   R  VFKA   LK  + +
Sbjct: 61 RNPQTGKEIKIAASRNPVFKAGKALKDAVNN 91


>gi|304395502|ref|ZP_07377385.1| histone family protein DNA-binding protein [Pantoea sp. aB]
 gi|304356796|gb|EFM21160.1| histone family protein DNA-binding protein [Pantoea sp. aB]
          Length = 93

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R +      + D+   G+ + +  F TF V+ + +R G
Sbjct: 4  VNKSQLIDKIAADADISKAAAGRVLDAFMGSVSDALKEGDEVALVGFGTFSVRDRAARTG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F+A   LK  + 
Sbjct: 64 RNPQTGKEITIPAGKVPGFRAGKALKDAVN 93


>gi|114565657|ref|YP_752811.1| DNA-binding protein HU [Syntrophomonas wolfei subsp. wolfei str.
          Goettingen]
 gi|114336592|gb|ABI67440.1| bacterial nucleoid protein Hbs [Syntrophomonas wolfei subsp.
          wolfei str. Goettingen]
          Length = 90

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  ++ + G+++KD  + V   F+ +       + +++  F TF V+ + +R G
Sbjct: 1  MNKTELVGQVAAKTGMTKKDVEKVVNAFFDTVEGVLKEDDKVQLIGFGTFEVRARQARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V  FKA   LK  +
Sbjct: 61 RNPQTGEEINIPATKVPAFKAGKALKDAL 89


>gi|115524833|ref|YP_781744.1| integration host factor, alpha subunit [Rhodopseudomonas palustris
           BisA53]
 gi|122295977|sp|Q07MS0|IHFA_RHOP5 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|115518780|gb|ABJ06764.1| integration host factor, alpha subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 113

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/108 (47%), Positives = 71/108 (65%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR DL +++ ++ GLSR +S+ FV  +  EI D   +GE +K+SSF +F V+QKG 
Sbjct: 5   GKTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRQKGQ 64

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
           R+GRN +T  EV I PRRV+VFK S+ILK+RI     G   N D   +
Sbjct: 65  RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINGQANGSMSNSDQAET 112


>gi|108759809|ref|YP_631785.1| integration host factor subunit alpha [Myxococcus xanthus DK
          1622]
 gi|14194862|sp|Q9K4Q3|IHFA_MYXXA RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123247723|sp|Q1D6D8|IHFA_MYXXD RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|9663772|emb|CAC01236.1| integration host factor alpha subunit [Myxococcus xanthus]
 gi|108463689|gb|ABF88874.1| integration host factor, alpha subunit [Myxococcus xanthus DK
          1622]
          Length = 129

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 62/92 (67%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+++ + ++ G S+K+S   V  +F+ + ++  RG+ IKIS F  F V+QK +RVG
Sbjct: 1  MTKADIIEGVYEKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN QT +E++I  RRV+ F+ S +LK  +  +
Sbjct: 61 RNPQTGKEIEISARRVLTFRPSQVLKSALNGE 92


>gi|239995520|ref|ZP_04716044.1| histone-like DNA-binding protein [Alteromonas macleodii ATCC
          27126]
 gi|332141941|ref|YP_004427679.1| histone-like DNA-binding protein [Alteromonas macleodii str.
          'Deep ecotype']
 gi|327551963|gb|AEA98681.1| histone-like DNA-binding protein [Alteromonas macleodii str.
          'Deep ecotype']
 gi|332992310|gb|AEF02365.1| histone-like DNA-binding protein [Alteromonas sp. SN2]
          Length = 90

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 45/88 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +    + +  +   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDQIAAGADISKAAAGRALDAFTDSVTAALKDGDQVALVGFGTFSVRERSARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN QT + ++I   +V  FKA   LK  
Sbjct: 61 RNPQTGETIQISAAKVPSFKAGKALKDA 88


>gi|17987462|ref|NP_540096.1| integration host factor subunit alpha [Brucella melitensis bv. 1
           str. 16M]
 gi|17983157|gb|AAL52360.1| integration host factor alpha-subunit [Brucella melitensis bv. 1
           str. 16M]
          Length = 128

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/102 (47%), Positives = 74/102 (72%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +++ ++ GLSR +S   V  + +E+CD+ V GE +K+SSFATF V+ K  
Sbjct: 24  GKTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNE 83

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           R+GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+  
Sbjct: 84  RIGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQGK 125


>gi|154248306|ref|YP_001419264.1| integration host factor subunit alpha [Xanthobacter autotrophicus
          Py2]
 gi|226709760|sp|A7INL3|IHFA_XANP2 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|154162391|gb|ABS69607.1| integration host factor, alpha subunit [Xanthobacter
          autotrophicus Py2]
          Length = 105

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/96 (50%), Positives = 69/96 (71%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +T+TR+DL +++ ++ GLSR +S + V  +  EI D   RGE +K+SSF +F V++KG 
Sbjct: 3  GRTVTRADLCEAVYQQVGLSRTESAQLVEMVLKEIADCLARGETVKLSSFGSFVVREKGE 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          RVGRN +T +EV I+PRRV+VFK SSILK RI   +
Sbjct: 63 RVGRNPKTGEEVPIEPRRVMVFKPSSILKHRINGTV 98


>gi|17546302|ref|NP_519704.1| integration host factor subunit alpha [Ralstonia solanacearum
          GMI1000]
 gi|21362602|sp|Q8XZ23|IHFA_RALSO RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|17428599|emb|CAD15285.1| probable integration host factor alpha-subunit (ihf-alpha)
          protein [Ralstonia solanacearum GMI1000]
          Length = 104

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 58/96 (60%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           T+T+++L + + ++ GL++++S   V   F+ I ++  +G+++K+S F  F ++ K  R
Sbjct: 2  PTLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           GRN +T + + I  RRVV F AS  LK  + + + 
Sbjct: 62 PGRNPKTGEIIPITARRVVTFHASQKLKALVEERVE 97


>gi|323705550|ref|ZP_08117124.1| histone family protein DNA-binding protein [Thermoanaerobacterium
          xylanolyticum LX-11]
 gi|323535027|gb|EGB24804.1| histone family protein DNA-binding protein [Thermoanaerobacterium
          xylanolyticum LX-11]
          Length = 92

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  I+++  L++KD+ + +    + + ++  +G+ +++  F TF V+++  R G
Sbjct: 2  VNKADLVTKIAEKSELTKKDAEKALNAFVDAVQEALKQGDKVQLVGFGTFEVRERAERKG 61

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +  VFKA   LK  + 
Sbjct: 62 RNPQTKEEITIPASKAPVFKAGKALKDLVN 91


>gi|90021258|ref|YP_527085.1| nucleoid protein HU subunit beta [Saccharophagus degradans 2-40]
 gi|89950858|gb|ABD80873.1| bacterial nucleoid protein HU beta subunit [Saccharophagus
          degradans 2-40]
          Length = 90

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I+    +S+  + R +  +   I ++   G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSELIEAIAASADISKAAAGRALDAVTESIGEALKNGDQVALVGFGTFLVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   ++I   ++  FK    LK  + 
Sbjct: 61 RNPQTGAPIEIAAAKIPSFKPGKALKDAVN 90


>gi|227893493|ref|ZP_04011298.1| DNA-binding protein HU [Lactobacillus ultunensis DSM 16047]
 gi|227864718|gb|EEJ72139.1| DNA-binding protein HU [Lactobacillus ultunensis DSM 16047]
          Length = 91

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 49/89 (55%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV  ++ +  L++K+    V  +F  I D+  +GE +++  F TF V+ + +R GR
Sbjct: 3  NKAELVSEVASKTKLTKKEVAAAVDAIFGSIQDNLAKGEKVQLIGFGTFEVRHRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E++I    V  FK    LK+ + 
Sbjct: 63 NPQTGDEIQIPASEVPAFKPGKALKEAVK 91


>gi|229025157|ref|ZP_04181581.1| DNA-binding protein HU [Bacillus cereus AH1272]
 gi|228736090|gb|EEL86661.1| DNA-binding protein HU [Bacillus cereus AH1272]
          Length = 90

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 57/90 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K++++   +S+K++T  V T+   I ++   GE +++  F TF V+++ +R G
Sbjct: 1  MNKTELIKNVAQNAEISQKEATVVVQTVVESITNALAAGEKVQLIGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FKA   LK+ + 
Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKEAVK 90


>gi|84500953|ref|ZP_00999188.1| integration host factor, alpha subunit [Oceanicola batsensis
          HTCC2597]
 gi|84391020|gb|EAQ03438.1| integration host factor, alpha subunit [Oceanicola batsensis
          HTCC2597]
          Length = 100

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/99 (47%), Positives = 68/99 (68%), Gaps = 1/99 (1%)

Query: 1  MSKT-ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          M +T +TR DL +++ +E GLSR DS + V ++   + D+ VRGE +KISSF TF V+ K
Sbjct: 1  MGETTLTRLDLSEAVFREVGLSRNDSAQLVESVLTHMSDALVRGEQVKISSFGTFSVRDK 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           +RVGRN +T +EV I PRRV+ F+ S ++K R+ D  R
Sbjct: 61 AARVGRNPKTGEEVPISPRRVLTFRPSHLMKDRVADGNR 99


>gi|229174387|ref|ZP_04301919.1| DNA-binding protein HU [Bacillus cereus MM3]
 gi|228608947|gb|EEK66237.1| DNA-binding protein HU [Bacillus cereus MM3]
          Length = 93

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 58/92 (63%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K + +++L+K++++   +S+K++T  + T+   I ++   GE +++  F TF V+++ +R
Sbjct: 2  KNMNKTELIKNVAQNAEISQKEATVVLQTVVESITNTLAAGEKVQLIGFGTFEVRERAAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E++I   +V  FKA   LK+ + 
Sbjct: 62 TGRNPQTGEEMQIAASKVPAFKAGKELKEAVK 93


>gi|90407137|ref|ZP_01215325.1| Bacterial nucleoid DNA-binding protein [Psychromonas sp. CNPT3]
 gi|90311713|gb|EAS39810.1| Bacterial nucleoid DNA-binding protein [Psychromonas sp. CNPT3]
          Length = 91

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV  I+++  L++  +   V  +   I DS   GE +++  F TF V  + +R+G
Sbjct: 1  MNKTQLVAQIAEKSELTKVQAKAAVEQILASITDSLKDGEPVQLIGFGTFKVNHRAARIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT ++++I    V  F A   LK+ + 
Sbjct: 61 RNPQTGEDIQIKAANVPAFVAGKALKESVN 90


>gi|156972573|ref|YP_001443480.1| DNA-binding protein [Vibrio harveyi ATCC BAA-1116]
 gi|156524167|gb|ABU69253.1| hypothetical protein VIBHAR_00213 [Vibrio harveyi ATCC BAA-1116]
          Length = 101

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 44/93 (47%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
              + ++ L+  I+++  LS+  +   +      +  +   G+ +++  F TF V  + +
Sbjct: 9   GNLMNKTQLIDFIAEKADLSKAQAKAALEATLEGVTGALKEGDQVQLIGFGTFKVNHRAA 68

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           R GRN +T  E++I    V  F A   LK+ + 
Sbjct: 69  RTGRNPKTGDEIQIAAANVPAFVAGKALKESVN 101


>gi|296112017|ref|YP_003622399.1| DNA-binding protein II [Leuconostoc kimchii IMSNU 11154]
 gi|300173423|ref|YP_003772589.1| DNA-binding protein HU [Leuconostoc gasicomitatum LMG 18811]
 gi|295833549|gb|ADG41430.1| DNA-binding protein II [Leuconostoc kimchii IMSNU 11154]
 gi|299887802|emb|CBL91770.1| DNA-binding protein HU [Leuconostoc gasicomitatum LMG 18811]
          Length = 91

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 50/89 (56%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + +LV S++K  GL++KD+T  V  +F  I  +   GE +++  F  F V+ + +R GR
Sbjct: 3  NKQELVDSVAKATGLTKKDATASVDAVFASIEAALKNGEKVQLIGFGNFEVRDRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E++I   +V  FK    LK+ + 
Sbjct: 63 NPQTGAEIEIPASKVPAFKPGKALKEAVK 91


>gi|251790645|ref|YP_003005366.1| transcriptional regulator HU subunit beta [Dickeya zeae Ech1591]
 gi|271499600|ref|YP_003332625.1| histone family protein DNA-binding protein [Dickeya dadantii
          Ech586]
 gi|307129930|ref|YP_003881946.1| HU, DNA-binding transcriptional regulator, subunit beta [Dickeya
          dadantii 3937]
 gi|247539266|gb|ACT07887.1| histone family protein DNA-binding protein [Dickeya zeae Ech1591]
 gi|270343155|gb|ACZ75920.1| histone family protein DNA-binding protein [Dickeya dadantii
          Ech586]
 gi|306527459|gb|ADM97389.1| HU, DNA-binding transcriptional regulator, beta subunit [Dickeya
          dadantii 3937]
          Length = 90

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R +  +   + +S   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAADADISKAAAGRVLDAIIGSVTESLKAGDDVALVGFGTFSVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F+A   LK  + 
Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKALKDSVN 90


>gi|308185911|ref|YP_003930042.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea
          vagans C9-1]
 gi|308056421|gb|ADO08593.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea
          vagans C9-1]
          Length = 93

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 47/92 (51%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K + +S L+  I+ +  +S+  + R +      + D+   G+ + +  F TF V+ + +R
Sbjct: 2  KRVNKSQLIDKIAADADISKAAAGRVLDAFMGSVSDALKEGDEVALVGFGTFSVRDRAAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E+ I   +V  F+A   LK  + 
Sbjct: 62 TGRNPQTGKEITIPAGKVPGFRAGKALKDAVN 93


>gi|317492906|ref|ZP_07951330.1| DNA-binding protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919028|gb|EFV40363.1| DNA-binding protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 90

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S LV  I++   +S+  + R +  +   + +S   G+++ +  F TF V+++ +R G
Sbjct: 1  MNKSQLVDKIAEGADISKAAAGRALDAIIASVTESLQSGDSVALVGFGTFDVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F+A   LK  + 
Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKALKDAVN 90


>gi|270291292|ref|ZP_06197514.1| DNA-binding protein HU-beta [Pediococcus acidilactici 7_4]
 gi|304385040|ref|ZP_07367386.1| DNA-binding protein HU [Pediococcus acidilactici DSM 20284]
 gi|270280138|gb|EFA25974.1| DNA-binding protein HU-beta [Pediococcus acidilactici 7_4]
 gi|304329234|gb|EFL96454.1| DNA-binding protein HU [Pediococcus acidilactici DSM 20284]
          Length = 91

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 55/89 (61%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV++++K+ GL++KD+T  V  +F  I D   +G+ +++  F TF V+ + +R GR
Sbjct: 3  NKAELVENVAKKTGLTKKDATAAVEAVFGSIQDDLKKGDKVQLIGFGTFEVRNRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E++I   +V  FK    LK  + 
Sbjct: 63 NPQTGKEIEIAASKVPAFKPGKALKDAVK 91


>gi|297538932|ref|YP_003674701.1| integration host factor subunit alpha [Methylotenera sp. 301]
 gi|297258279|gb|ADI30124.1| integration host factor, alpha subunit [Methylotenera sp. 301]
          Length = 97

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 57/94 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+++L   + ++ GL+++++   V   F E+  +   G+++K+S F  F +++K  R 
Sbjct: 2  TLTKAELADLLYEQVGLNKREAKDMVEAFFEEVRIALEAGDSVKLSGFGNFELRKKSERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T +E+ I  RRVV F AS  LK ++  + 
Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKSKVEANY 95


>gi|228899754|ref|ZP_04064001.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222]
 gi|228912379|ref|ZP_04076069.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
 gi|228847234|gb|EEM92198.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
 gi|228859868|gb|EEN04281.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222]
          Length = 90

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 56/90 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  +S++  L++K++T  V  + ++I  S  + E++++  F TF V+++ +R G
Sbjct: 1  MNKTELINQVSEKTSLTKKEATASVQAILDQITQSLQKEESVQLIGFGTFEVRKRSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  FKA   LK+ + 
Sbjct: 61 RNPQTGEEMHIPGGKVPGFKAGKALKEAVK 90


>gi|157161173|ref|YP_001458491.1| integration host factor subunit alpha [Escherichia coli HS]
 gi|166918503|sp|A8A0Q4|IHFA_ECOHS RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|157066853|gb|ABV06108.1| integration host factor, alpha subunit [Escherichia coli HS]
          Length = 99

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 54/93 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  TLTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +++ I  RRVV F+    LK R+ + 
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94


>gi|292487472|ref|YP_003530344.1| transcriptional regulator HU subunit beta [Erwinia amylovora
          CFBP1430]
 gi|292898714|ref|YP_003538083.1| DNA-binding protein HU-beta [Erwinia amylovora ATCC 49946]
 gi|291198562|emb|CBJ45670.1| DNA-binding protein HU-beta [Erwinia amylovora ATCC 49946]
 gi|291552891|emb|CBA19936.1| transcriptional regulator HU subunit beta [Erwinia amylovora
          CFBP1430]
 gi|312171577|emb|CBX79835.1| transcriptional regulator HU subunit beta [Erwinia amylovora ATCC
          BAA-2158]
          Length = 90

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ E  +S+  + R +      + +S   G+ + +  F TF V+++  RVG
Sbjct: 1  MNKSQLIDKIAAEADISKAAAGRVLDAFIGSVTESLQAGDEVALVGFGTFSVRERAERVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F+A   LK  + 
Sbjct: 61 RNPQTGKEITIAAGKVPGFRAGKALKDAVN 90


>gi|197284030|ref|YP_002149902.1| DNA-binding protein HU-beta [Proteus mirabilis HI4320]
 gi|194681517|emb|CAR40401.1| DNA-binding protein HU-beta [Proteus mirabilis HI4320]
          Length = 91

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+    +++  + R V  +   I +S  +G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLIDKIAANADITKAAAGRVVDAMVASITESLQKGDDVALVGFGTFTVRDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E++I   +V  F+A   LK  +  
Sbjct: 61 RNPQTGKEIQIAAAKVPAFRAGKGLKDAVNQ 91


>gi|114320093|ref|YP_741776.1| integration host factor subunit beta [Alkalilimnicola ehrlichii
          MLHE-1]
 gi|122312080|sp|Q0AA51|IHFB_ALHEH RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|114226487|gb|ABI56286.1| integration host factor, beta subunit [Alkalilimnicola ehrlichii
          MLHE-1]
          Length = 100

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I+ K+  L+ KD    V TL  ++ ++   GE I+I  F +F +  +  R+
Sbjct: 1  MTKSELIEVIAGKQQHLAHKDVELAVKTLLEQMSETLASGERIEIRGFGSFSLHHRPPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T + V +  + V  FK    L+ R+      
Sbjct: 61 GRNPKTGEPVALPGKYVPHFKPGKELRDRVNAGRHN 96


>gi|117618302|ref|YP_856844.1| integration host factor, alpha subunit [Aeromonas hydrophila
          subsp. hydrophila ATCC 7966]
 gi|330829620|ref|YP_004392572.1| integration host factor subunit alpha [Aeromonas veronii B565]
 gi|166918496|sp|A0KKP3|IHFA_AERHH RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|117559709|gb|ABK36657.1| integration host factor, alpha subunit [Aeromonas hydrophila
          subsp. hydrophila ATCC 7966]
 gi|328804756|gb|AEB49955.1| Integration host factor subunit alpha [Aeromonas veronii B565]
          Length = 98

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 55/92 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + +  + G+S++++   V   F EI  +  RGE +KIS F  F +++K  R 
Sbjct: 2  ALTKADIAEHLFTQLGMSKREAKDMVEAFFEEIRQALERGEQVKISGFGNFDLREKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVEN 93


>gi|161507461|ref|YP_001577415.1| DNA-binding protein II HB [Lactobacillus helveticus DPC 4571]
 gi|260101627|ref|ZP_05751864.1| DNA-binding protein HU [Lactobacillus helveticus DSM 20075]
 gi|160348450|gb|ABX27124.1| DNA-binding protein II HB [Lactobacillus helveticus DPC 4571]
 gi|260084560|gb|EEW68680.1| DNA-binding protein HU [Lactobacillus helveticus DSM 20075]
          Length = 91

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 49/88 (55%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV  ++ +  L++K+    V  +F  I D+  +GE +++  F TF V+ + +R GR
Sbjct: 3  NKAELVSEVASKTKLTKKEVAAAVDAIFGSIQDNLAKGEKVQLIGFGTFEVRHRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93
          N QT  E++I    V  FK    LK+ +
Sbjct: 63 NPQTGDEIEIPASEVPAFKPGKALKEAV 90


>gi|54309334|ref|YP_130354.1| integration host factor subunit alpha [Photobacterium profundum
          SS9]
 gi|46913770|emb|CAG20552.1| putative integration host factor, alpha subunit [Photobacterium
          profundum SS9]
          Length = 103

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 54/94 (57%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          +S  +T++DL + + +  GLS++D+   V   F EI  +   GE +K+S F  F ++ K 
Sbjct: 4  LSMALTKADLAEDLFENVGLSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKN 63

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           R GRN +T +++ I  RRVV F+    LK R+ 
Sbjct: 64 ERPGRNPKTGEDIPISARRVVTFRPGQKLKARVE 97


>gi|228918712|ref|ZP_04082132.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228840929|gb|EEM86151.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 93

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 54/92 (58%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +++L K I+++  L++KD+      + + I ++   G+ ++I  F TF V+++  R
Sbjct: 2  QKMNKTELTKVIAEKAELTQKDAATATQAVLDTITNALANGDKVQILGFGTFEVRERSER 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E++I   +V  FKA   LK+ + 
Sbjct: 62 TGRNPQTGEEMQIAASKVPAFKAGKELKEAVK 93


>gi|260773191|ref|ZP_05882107.1| DNA-binding protein HU-beta [Vibrio metschnikovii CIP 69.14]
 gi|260612330|gb|EEX37533.1| DNA-binding protein HU-beta [Vibrio metschnikovii CIP 69.14]
          Length = 90

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 47/88 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I++   +S+  + R +      + D+   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVEKIAENADISKASAGRALDAFIEAVTDTLQSGDQVALVGFGTFSVRSRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN +T +E++I   +V  FKA   LK  
Sbjct: 61 RNPKTGEEIQIAEAKVPAFKAGKALKDA 88


>gi|288940721|ref|YP_003442961.1| integration host factor subunit alpha [Allochromatium vinosum DSM
          180]
 gi|288896093|gb|ADC61929.1| integration host factor, alpha subunit [Allochromatium vinosum
          DSM 180]
          Length = 99

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 55/91 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + + +E GL+++++   V   F EI  +  RGE +K+S F  F +++K  R 
Sbjct: 2  ALTKADMAEHLFEELGLNKREAKDIVEMFFEEIRAALERGEQVKLSGFGNFDLREKKERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  RRVV F+    LK R+ 
Sbjct: 62 GRNPKTGEEIPITARRVVTFRPGQKLKSRVE 92


>gi|323495666|ref|ZP_08100737.1| integration host factor subunit alpha [Vibrio sinaloensis DSM
          21326]
 gi|323319301|gb|EGA72241.1| integration host factor subunit alpha [Vibrio sinaloensis DSM
          21326]
          Length = 98

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 54/92 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ ++ G S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAENLFEKHGFSKRDAKETVEAFFEEIRKALEGGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVEN 93


>gi|294635327|ref|ZP_06713824.1| DNA-binding protein HU-beta [Edwardsiella tarda ATCC 23685]
 gi|291091303|gb|EFE23864.1| DNA-binding protein HU-beta [Edwardsiella tarda ATCC 23685]
          Length = 90

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I++   +S+  + R +      + +S  +G+A+ +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAEGADISKAAAGRALDAFIASVTESLQQGDAVALVGFGTFDVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  F+A   LK  + 
Sbjct: 61 RNPQTGKEIEISAAKVPGFRAGKALKDAVN 90


>gi|74317031|ref|YP_314771.1| integration host factor subunit alpha [Thiobacillus denitrificans
           ATCC 25259]
 gi|123731845|sp|Q3SK28|IHFA_THIDA RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|74056526|gb|AAZ96966.1| integration host factor, alpha subunit [Thiobacillus denitrificans
           ATCC 25259]
          Length = 103

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 60/101 (59%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T++DL + + ++ GL+++++   V + F+EI  +  +G+ +K+S F  F  ++K  R 
Sbjct: 3   TLTKADLAELLFEKVGLNKREAKDVVESFFDEIRLALEKGDIVKLSGFGNFQCREKPQRP 62

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           GRN +T +E+ I  RRVV F AS  LK ++     G    +
Sbjct: 63  GRNPKTGEEMPISARRVVTFHASQKLKSQVEGARIGTPSQE 103


>gi|269139156|ref|YP_003295857.1| integration host factor, alpha subunit [Edwardsiella tarda
          EIB202]
 gi|294636235|ref|ZP_06714648.1| integration host factor, alpha subunit [Edwardsiella tarda ATCC
          23685]
 gi|267984817|gb|ACY84646.1| integration host factor, alpha subunit [Edwardsiella tarda
          EIB202]
 gi|291090470|gb|EFE23031.1| integration host factor, alpha subunit [Edwardsiella tarda ATCC
          23685]
 gi|304559080|gb|ADM41744.1| Integration host factor alpha subunit [Edwardsiella tarda FL6-60]
          Length = 98

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 54/95 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +++ I  RRVV F+    LK R+ +   
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENATP 96


>gi|186476310|ref|YP_001857780.1| integration host factor subunit alpha [Burkholderia phymatum
           STM815]
 gi|184192769|gb|ACC70734.1| integration host factor, alpha subunit [Burkholderia phymatum
           STM815]
          Length = 117

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 54/95 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   G+++K+S F  F ++ K  
Sbjct: 16  APTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQ 75

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS  LK  + + 
Sbjct: 76  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 110


>gi|262196926|ref|YP_003268135.1| integration host factor, subunit alpha [Haliangium ochraceum DSM
          14365]
 gi|262080273|gb|ACY16242.1| integration host factor, alpha subunit [Haliangium ochraceum DSM
          14365]
          Length = 100

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 60/93 (64%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T++D++ ++ ++ G  S+K++   V T+F+ I  +  +GE IKIS F  F V++K +R+
Sbjct: 4  MTKADIIDAVYEKVGGFSKKEAAEIVETVFDTIKQTLEQGEKIKISGFGNFVVREKKARI 63

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN QT +E+ I  RRV+ FK S +LK  +   
Sbjct: 64 GRNPQTGEEITISARRVLTFKPSQVLKNALNGG 96


>gi|237745476|ref|ZP_04575956.1| integration host factor subunit alpha [Oxalobacter formigenes
           HOxBLS]
 gi|229376827|gb|EEO26918.1| integration host factor subunit alpha [Oxalobacter formigenes
           HOxBLS]
          Length = 125

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/95 (36%), Positives = 58/95 (61%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + + ++ GL+++++   V T F EIC +  RGE +K+S F  F ++ K  
Sbjct: 30  TSTLTKAELTELLYEQVGLNKREAKEMVETFFEEICCALERGEMVKLSGFGNFQLRDKPQ 89

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T +E+ I  RRVV F AS  LK  +   
Sbjct: 90  RPGRNPRTGEEIPITARRVVTFHASQKLKSMVESA 124


>gi|148559603|ref|YP_001258756.1| integration host factor subunit alpha [Brucella ovis ATCC 25840]
 gi|148370860|gb|ABQ60839.1| integration host factor, alpha subunit [Brucella ovis ATCC 25840]
          Length = 128

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/102 (47%), Positives = 74/102 (72%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +++ ++ GLSR +S   V  + +E+CD+ V GE +K+SSFATF V+ K  
Sbjct: 24  GKTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNE 83

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           R+GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+  
Sbjct: 84  RIGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQGK 125


>gi|116492840|ref|YP_804575.1| nucleoid protein Hbs [Pediococcus pentosaceus ATCC 25745]
 gi|116102990|gb|ABJ68133.1| bacterial nucleoid protein Hbs [Pediococcus pentosaceus ATCC
          25745]
          Length = 91

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 54/89 (60%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV +++K  GL++KD+T  V  +F+ I D   +GE +++  F TF V+ + +R GR
Sbjct: 3  NKAELVDNVAKVTGLTKKDATAAVDAVFSSIQDDLKKGEKVQLIGFGTFEVRNRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E++I   +V  FK    LK  + 
Sbjct: 63 NPQTGKEIEIAASKVPAFKPGKALKDAVK 91


>gi|254469379|ref|ZP_05082784.1| integration host factor, alpha subunit [Pseudovibrio sp. JE062]
 gi|211961214|gb|EEA96409.1| integration host factor, alpha subunit [Pseudovibrio sp. JE062]
          Length = 103

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/96 (47%), Positives = 68/96 (70%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          S T+TR+DL +++ ++ GLSR +S   V  +  EI  S   GE++K+SSF +F V+ KG 
Sbjct: 3  SHTVTRADLCEAVYQKVGLSRTESAELVEQVLAEISASLENGESVKLSSFGSFVVRSKGE 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          R+GRN +T +EV I PRRV+VFK S++LK+RI D +
Sbjct: 63 RIGRNPKTGEEVPISPRRVMVFKPSNVLKQRINDAL 98


>gi|188534629|ref|YP_001908426.1| HopD, DNA-binding protein HU-beta (synonym HupB) [Erwinia
          tasmaniensis Et1/99]
 gi|188029671|emb|CAO97550.1| HopD, DNA-binding protein HU-beta (synonym HupB) [Erwinia
          tasmaniensis Et1/99]
          Length = 90

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  I+ +  +S+  + R +      + +S   G+ + +  F TF V+++  RVG
Sbjct: 1  MNKSELIDKIATDADISKAAAGRVLDAFIGSVTESLQAGDEVALVGFGTFSVRERAERVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F+A   LK  + 
Sbjct: 61 RNPQTGKEITIAAGKVPGFRAGKTLKDAVN 90


>gi|16801114|ref|NP_471382.1| hypothetical protein lin2048 [Listeria innocua Clip11262]
 gi|16803973|ref|NP_465458.1| hypothetical protein lmo1934 [Listeria monocytogenes EGD-e]
 gi|46908167|ref|YP_014556.1| DNA-binding protein HU [Listeria monocytogenes serotype 4b str.
          F2365]
 gi|47094458|ref|ZP_00232138.1| DNA-binding protein HU [Listeria monocytogenes str. 4b H7858]
 gi|47097574|ref|ZP_00235105.1| DNA-binding protein HU [Listeria monocytogenes str. 1/2a F6854]
 gi|116873376|ref|YP_850157.1| DNA-binding protein HU [Listeria welshimeri serovar 6b str.
          SLCC5334]
 gi|217963914|ref|YP_002349592.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Listeria
          monocytogenes HCC23]
 gi|224498616|ref|ZP_03666965.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Listeria
          monocytogenes Finland 1988]
 gi|224501267|ref|ZP_03669574.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Listeria
          monocytogenes FSL R2-561]
 gi|226224538|ref|YP_002758645.1| non-specific DNA-binding protein HU [Listeria monocytogenes
          Clip81459]
 gi|254825571|ref|ZP_05230572.1| DNA-binding protein HU [Listeria monocytogenes FSL J1-194]
 gi|254827181|ref|ZP_05231868.1| DNA-binding protein HU [Listeria monocytogenes FSL N3-165]
 gi|254831465|ref|ZP_05236120.1| non-specific DNA-binding protein HU [Listeria monocytogenes
          10403S]
 gi|254852837|ref|ZP_05242185.1| DNA-binding protein HU [Listeria monocytogenes FSL R2-503]
 gi|254899369|ref|ZP_05259293.1| non-specific DNA-binding protein HU [Listeria monocytogenes
          J0161]
 gi|254912492|ref|ZP_05262504.1| DNA-binding protein HU [Listeria monocytogenes J2818]
 gi|254931895|ref|ZP_05265254.1| DNA-binding protein HU [Listeria monocytogenes HPB2262]
 gi|254936819|ref|ZP_05268516.1| DNA-binding protein HU [Listeria monocytogenes F6900]
 gi|254993467|ref|ZP_05275657.1| non-specific DNA-binding protein HU [Listeria monocytogenes FSL
          J2-064]
 gi|255522325|ref|ZP_05389562.1| non-specific DNA-binding protein HU [Listeria monocytogenes FSL
          J1-175]
 gi|284802379|ref|YP_003414244.1| hypothetical protein LM5578_2135 [Listeria monocytogenes 08-5578]
 gi|284995521|ref|YP_003417289.1| hypothetical protein LM5923_2086 [Listeria monocytogenes 08-5923]
 gi|289435283|ref|YP_003465155.1| DNA-binding protein HU [Listeria seeligeri serovar 1/2b str.
          SLCC3954]
 gi|290892094|ref|ZP_06555090.1| DNA-binding protein HU [Listeria monocytogenes FSL J2-071]
 gi|300763756|ref|ZP_07073753.1| DNA-binding protein HU [Listeria monocytogenes FSL N1-017]
 gi|315282964|ref|ZP_07871256.1| DNA-binding protein HU [Listeria marthii FSL S4-120]
 gi|315303883|ref|ZP_07874360.1| DNA-binding protein HU [Listeria ivanovii FSL F6-596]
 gi|16411387|emb|CAD00012.1| hup [Listeria monocytogenes EGD-e]
 gi|16414549|emb|CAC97278.1| hup [Listeria innocua Clip11262]
 gi|46881437|gb|AAT04733.1| DNA-binding protein HU [Listeria monocytogenes serotype 4b str.
          F2365]
 gi|47014049|gb|EAL05051.1| DNA-binding protein HU [Listeria monocytogenes str. 1/2a F6854]
 gi|47017173|gb|EAL08026.1| DNA-binding protein HU [Listeria monocytogenes str. 4b H7858]
 gi|116742254|emb|CAK21378.1| DNA-binding protein HU [Listeria welshimeri serovar 6b str.
          SLCC5334]
 gi|217333184|gb|ACK38978.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Listeria
          monocytogenes HCC23]
 gi|225877000|emb|CAS05709.1| Putative non-specific DNA-binding protein HU [Listeria
          monocytogenes serotype 4b str. CLIP 80459]
 gi|258599564|gb|EEW12889.1| DNA-binding protein HU [Listeria monocytogenes FSL N3-165]
 gi|258606166|gb|EEW18774.1| DNA-binding protein HU [Listeria monocytogenes FSL R2-503]
 gi|258609414|gb|EEW22022.1| DNA-binding protein HU [Listeria monocytogenes F6900]
 gi|284057941|gb|ADB68882.1| hypothetical protein LM5578_2135 [Listeria monocytogenes 08-5578]
 gi|284060988|gb|ADB71927.1| hypothetical protein LM5923_2086 [Listeria monocytogenes 08-5923]
 gi|289171527|emb|CBH28071.1| DNA-binding protein HU [Listeria seeligeri serovar 1/2b str.
          SLCC3954]
 gi|290558217|gb|EFD91735.1| DNA-binding protein HU [Listeria monocytogenes FSL J2-071]
 gi|293583447|gb|EFF95479.1| DNA-binding protein HU [Listeria monocytogenes HPB2262]
 gi|293590474|gb|EFF98808.1| DNA-binding protein HU [Listeria monocytogenes J2818]
 gi|293594814|gb|EFG02575.1| DNA-binding protein HU [Listeria monocytogenes FSL J1-194]
 gi|300515492|gb|EFK42542.1| DNA-binding protein HU [Listeria monocytogenes FSL N1-017]
 gi|307571516|emb|CAR84695.1| DNA-binding protein [Listeria monocytogenes L99]
 gi|313607937|gb|EFR84075.1| DNA-binding protein HU [Listeria monocytogenes FSL F2-208]
 gi|313613391|gb|EFR87243.1| DNA-binding protein HU [Listeria marthii FSL S4-120]
 gi|313618142|gb|EFR90235.1| DNA-binding protein HU [Listeria innocua FSL S4-378]
 gi|313623144|gb|EFR93410.1| DNA-binding protein HU [Listeria innocua FSL J1-023]
 gi|313627747|gb|EFR96403.1| DNA-binding protein HU [Listeria ivanovii FSL F6-596]
 gi|313632625|gb|EFR99610.1| DNA-binding protein HU [Listeria seeligeri FSL N1-067]
 gi|313637161|gb|EFS02693.1| DNA-binding protein HU [Listeria seeligeri FSL S4-171]
 gi|328466283|gb|EGF37440.1| DNA-binding protein HU [Listeria monocytogenes 1816]
 gi|328472777|gb|EGF43626.1| DNA-binding protein HU [Listeria monocytogenes 220]
 gi|332312374|gb|EGJ25469.1| DNA-binding protein HU 1 [Listeria monocytogenes str. Scott A]
          Length = 91

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 52/89 (58%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           ++DLV S+++   LS+KD+ + V  +F  I  S  +GE +++  F  F V+++ +R GR
Sbjct: 3  NKTDLVNSVAELADLSKKDAAKAVEAVFETIQTSLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N +T +E+ I   +V  FK    LK+ + 
Sbjct: 63 NPRTKEEIDIPASKVPAFKPGKALKEAVK 91


>gi|121535091|ref|ZP_01666908.1| histone family protein DNA-binding protein [Thermosinus
          carboxydivorans Nor1]
 gi|121306341|gb|EAX47266.1| histone family protein DNA-binding protein [Thermosinus
          carboxydivorans Nor1]
          Length = 91

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 55/91 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++ G+++KD+ + +  +F  I ++  + + ++I  F TF V+ + +R G
Sbjct: 1  MNKTELIASVAEKAGMTKKDAEKALNAVFASIEEALAQNDKVQIIGFGTFEVRTREARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E+ I   +  VFKA   LK  +  
Sbjct: 61 RNPQTGKEIDIPASKSPVFKAGKGLKDAVNK 91


>gi|59711844|ref|YP_204620.1| integration host factor subunit alpha [Vibrio fischeri ES114]
 gi|197336165|ref|YP_002156041.1| integration host factor, alpha subunit [Vibrio fischeri MJ11]
 gi|75507023|sp|Q5E5G4|IHFA_VIBF1 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709758|sp|B5FDX6|IHFA_VIBFM RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|59479945|gb|AAW85732.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Vibrio fischeri ES114]
 gi|197317655|gb|ACH67102.1| integration host factor, alpha subunit [Vibrio fischeri MJ11]
          Length = 98

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 56/92 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ ++ GLS++D+   V   F EI  +   GE +K+S F  F +++K  R 
Sbjct: 2  ALTKADLAETLFEKVGLSKRDAKETVEVFFEEIKQALESGEQVKLSGFGNFDLREKSERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV FK    LK R+ +
Sbjct: 62 GRNPKTGEDIPISARRVVTFKPGQKLKARVEN 93


>gi|288958754|ref|YP_003449095.1| DNA-binding protein HU-beta [Azospirillum sp. B510]
 gi|288911062|dbj|BAI72551.1| DNA-binding protein HU-beta [Azospirillum sp. B510]
          Length = 90

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  +++  GLS+ D+T+ V  +F+ I +S   G+ +++  F TF V ++ +  G
Sbjct: 1  MNKNDLVAHVAEASGLSKTDATKAVDAVFDSIAESLKNGDEVRLVGFGTFAVAERPATEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +++ I   +   FKA   LK  + 
Sbjct: 61 RNPRTGEKIDIPASKQPKFKAGKTLKDALN 90


>gi|225017256|ref|ZP_03706448.1| hypothetical protein CLOSTMETH_01182 [Clostridium methylpentosum
          DSM 5476]
 gi|224950031|gb|EEG31240.1| hypothetical protein CLOSTMETH_01182 [Clostridium methylpentosum
          DSM 5476]
          Length = 91

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 53/91 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+SDL+ +++ +  LS+KD+ + V ++ + I ++ V G+ +++  F TF V+++ +R G
Sbjct: 1  MTKSDLINAVAAKAELSKKDAEKAVLSMIDAITEALVEGDKVQLVGFGTFEVRERKARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN    + + I    V  FKA   LK  +  
Sbjct: 61 RNPLNGEPMHIPATTVPAFKAGKALKDAVAK 91


>gi|254507806|ref|ZP_05119937.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus 16]
 gi|219549331|gb|EED26325.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus 16]
          Length = 90

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 48/88 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I++   LS+  + R +  L   + D+   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVEKIAENADLSKASAGRALDALIEAVSDTLQSGDQVALVGFGTFSVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN +T +E++I   +V  FKA   LK  
Sbjct: 61 RNPKTGEEIQIAEAKVPSFKAGKALKDA 88


>gi|209696250|ref|YP_002264180.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238]
 gi|208010203|emb|CAQ80530.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238]
          Length = 90

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+ +I+++  LS+  +   +      +  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDAIAEKADLSKAQAKAALEATLEGVTGALKDGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E++I    V  F A   LK+ + 
Sbjct: 61 RNPKTGEEIQIKAANVPAFVAGKALKESVN 90


>gi|73540975|ref|YP_295495.1| integration host factor subunit alpha [Ralstonia eutropha JMP134]
 gi|72118388|gb|AAZ60651.1| Integration host factor, alpha subunit [Ralstonia eutropha JMP134]
          Length = 138

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 56/93 (60%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            T+T+++L + +  + GL++++S   V   F+ I ++  +G+++K+S F  F ++ K  R
Sbjct: 38  PTLTKAELAEMLFDQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 97

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            GRN +T + + I  RRVV F AS  LK  + +
Sbjct: 98  PGRNPKTGEVIPITARRVVTFHASQKLKSLVEE 130


>gi|163941411|ref|YP_001646295.1| histone family protein DNA-binding protein [Bacillus
          weihenstephanensis KBAB4]
 gi|229012904|ref|ZP_04170069.1| DNA-binding protein HU [Bacillus mycoides DSM 2048]
 gi|229065846|ref|ZP_04201044.1| DNA-binding protein HU [Bacillus cereus AH603]
 gi|229134528|ref|ZP_04263339.1| DNA-binding protein HU [Bacillus cereus BDRD-ST196]
 gi|163863608|gb|ABY44667.1| histone family protein DNA-binding protein [Bacillus
          weihenstephanensis KBAB4]
 gi|228648921|gb|EEL04945.1| DNA-binding protein HU [Bacillus cereus BDRD-ST196]
 gi|228715422|gb|EEL67252.1| DNA-binding protein HU [Bacillus cereus AH603]
 gi|228748158|gb|EEL98018.1| DNA-binding protein HU [Bacillus mycoides DSM 2048]
          Length = 90

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 57/90 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K++++   +S+K++T  + T+   I +S   GE +++  F TF V+++ +R G
Sbjct: 1  MNKTELIKNVAQNAEISQKEATVVLQTVVESITNSLAAGEKVQLIGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FKA   LK+ + 
Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKEAVK 90


>gi|83942553|ref|ZP_00955014.1| integration host factor, alpha subunit [Sulfitobacter sp. EE-36]
 gi|83953774|ref|ZP_00962495.1| integration host factor, alpha subunit [Sulfitobacter sp.
          NAS-14.1]
 gi|83841719|gb|EAP80888.1| integration host factor, alpha subunit [Sulfitobacter sp.
          NAS-14.1]
 gi|83846646|gb|EAP84522.1| integration host factor, alpha subunit [Sulfitobacter sp. EE-36]
          Length = 100

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/96 (45%), Positives = 67/96 (69%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++ +E GLSR +S + V  +   + D+ V+GE +KISSF TF V+ K +R
Sbjct: 4  KTLTRMDLSEAVFREVGLSRNESAQLVEAVLEHMSDALVKGEQVKISSFGTFSVRDKSAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          VGRN +T +EV I+PRRV+ F+ S ++K R+ D  +
Sbjct: 64 VGRNPKTGEEVPINPRRVLTFRPSHLMKDRVADGNK 99


>gi|89892939|ref|YP_516426.1| hypothetical protein DSY0193 [Desulfitobacterium hafniense Y51]
 gi|219666205|ref|YP_002456640.1| histone family protein DNA-binding protein [Desulfitobacterium
          hafniense DCB-2]
 gi|89332387|dbj|BAE81982.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536465|gb|ACL18204.1| histone family protein DNA-binding protein [Desulfitobacterium
          hafniense DCB-2]
          Length = 91

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV +++++  +S+KD+ + V  +F  I ++  + E +++  F TF VK +  R G
Sbjct: 1  MNKADLVAAVAEKAEVSKKDAEKAVNAVFASIEEALAKNEKVQLVGFGTFEVKDRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + + I   +V  FKA   LK  +  
Sbjct: 61 RNPQTKEAIVIPASKVPGFKAGKALKDAVQQ 91


>gi|149377378|ref|ZP_01895122.1| integration host factor, beta subunit [Marinobacter algicola
          DG893]
 gi|149358302|gb|EDM46780.1| integration host factor, beta subunit [Marinobacter algicola
          DG893]
          Length = 98

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV+ I+ K+  LS KD    V T+   +  S   G+ I+I  F +F +  + +R 
Sbjct: 1  MTKSELVELIASKQTQLSVKDVELAVKTIIEHMSQSLADGQRIEIRGFGSFSLHHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T + V++  + V  FK    L++++ D ++
Sbjct: 61 GRNPKTGEAVQLPAKFVPHFKPGKELREQVNDSLK 95


>gi|50084585|ref|YP_046095.1| DNA-binding protein HU-beta [Acinetobacter sp. ADP1]
 gi|49530561|emb|CAG68273.1| DNA-binding protein HU-beta [Acinetobacter sp. ADP1]
          Length = 90

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+++ GLS+ D+ + +      + ++  +G+ + +  F TF VK + +R G
Sbjct: 1  MNKSELIDAIAEKGGLSKTDAGKALDATIASVTEALKKGDTVTLVGFGTFSVKDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E++I   +V  FKA   LK  + 
Sbjct: 61 RNPKTGEELQIKATKVPSFKAGKGLKDSVA 90


>gi|332993560|gb|AEF03615.1| integration host factor subunit alpha [Alteromonas sp. SN2]
          Length = 99

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 54/93 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ G++++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAEHLFEKLGINKRDAKDLVELFFEEIKGALEAGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +++ I  RRVV F+    LK R+ + 
Sbjct: 62 GRNPKTGEDIPIKARRVVTFRPGQKLKSRVENS 94


>gi|327398825|ref|YP_004339694.1| histone family protein DNA-binding protein [Hippea maritima DSM
           10411]
 gi|327181454|gb|AEA33635.1| histone family protein DNA-binding protein [Hippea maritima DSM
           10411]
          Length = 404

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 58/91 (63%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+S+LV++I+++ G S K +  FV    + + ++   G+++ I+ F  F+V Q+G R G
Sbjct: 314 MTKSELVEAIARKMGSSVKGANAFVNAFVDVVSEALKSGKSVSITGFGKFYVSQRGERTG 373

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN QT + +KI P ++  FKA  +LK+ I D
Sbjct: 374 RNPQTGEVIKIKPHKIPAFKAGQVLKQTIND 404


>gi|262370473|ref|ZP_06063799.1| DNA-binding protein HU-beta [Acinetobacter johnsonii SH046]
 gi|262314815|gb|EEY95856.1| DNA-binding protein HU-beta [Acinetobacter johnsonii SH046]
          Length = 90

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+++ GLS+ D+ + +      I ++   G+ + +  F TF+VK++ +R G
Sbjct: 1  MNKSELIDAIAEKGGLSKTDAGKALDATIASITEALKSGDTVTLVGFGTFNVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   ++I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGATLEIKASKVPSFKAGKGLKDSVA 90


>gi|220929825|ref|YP_002506734.1| histone family protein DNA-binding protein [Clostridium
          cellulolyticum H10]
 gi|220000153|gb|ACL76754.1| histone family protein DNA-binding protein [Clostridium
          cellulolyticum H10]
          Length = 91

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+ SI+ + GL++K+S   +    + + ++   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSDLINSIATKSGLNKKNSEAALNAFISSVEETLKAGDKVTLVGFGTFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +  VFKA   LK  + 
Sbjct: 61 RNPQTKEEITIPASKAPVFKAGKGLKDNVN 90


>gi|152976119|ref|YP_001375636.1| histone family protein DNA-binding protein [Bacillus cereus
          subsp. cytotoxis NVH 391-98]
 gi|152024871|gb|ABS22641.1| histone family protein DNA-binding protein [Bacillus cytotoxicus
          NVH 391-98]
          Length = 90

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 58/90 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+KS++++  +S+K++T  V ++   I ++   GE +++  F TF V+++ +R G
Sbjct: 1  MNKTELIKSVAQKAEISQKEATVVVQSVVESITNTLAAGEKVQLIGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FKA   LK+ + 
Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKEAVK 90


>gi|302388697|ref|YP_003824518.1| bacterial nucleoid protein Hbs [Thermosediminibacter oceani DSM
          16646]
 gi|302199325|gb|ADL06895.1| bacterial nucleoid protein Hbs [Thermosediminibacter oceani DSM
          16646]
          Length = 91

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  ++++ GL++KDS + +      + ++  + + +++  F TF V+++  R G
Sbjct: 1  MNKAELVSVMAEKSGLTKKDSEKALNAFIEAVSEALSKRDKVQLVGFGTFEVRERSQRKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E+ I    +  FKA   LK  I  
Sbjct: 61 RNPQTGEEIDIPAASIPAFKAGKALKDSINK 91


>gi|159044270|ref|YP_001533064.1| integration host factor subunit alpha [Dinoroseobacter shibae DFL
           12]
 gi|189044700|sp|A8LLT5|IHFA_DINSH RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|157912030|gb|ABV93463.1| integration host factor subunit alpha [Dinoroseobacter shibae DFL
           12]
          Length = 101

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/98 (45%), Positives = 69/98 (70%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR DL  ++ +E GLSR +S + V ++   + D+ VRGE++KISSF TF V+ K +R
Sbjct: 4   KTLTRMDLSDAVFREVGLSRNESAQLVESILTHMSDALVRGESVKISSFGTFSVRDKSAR 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           +GRN +T +EV I PRRV+ F+ S ++K+R+ +  R R
Sbjct: 64  IGRNPKTGEEVPIHPRRVLTFRPSHLMKERVANGNRNR 101


>gi|254506390|ref|ZP_05118532.1| DNA-binding protein HU-alpha [Vibrio parahaemolyticus 16]
 gi|219550564|gb|EED27547.1| DNA-binding protein HU-alpha [Vibrio parahaemolyticus 16]
          Length = 90

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +    + + D+   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLDGVTDALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E++I    V  F +   LK  + 
Sbjct: 61 RNPKTGEEIQIAAANVPAFVSGKALKDAVK 90


>gi|126736415|ref|ZP_01752157.1| integration host factor, alpha subunit [Roseobacter sp. CCS2]
 gi|126714236|gb|EBA11105.1| integration host factor, alpha subunit [Roseobacter sp. CCS2]
          Length = 100

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/96 (45%), Positives = 63/96 (65%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL  ++  + GLSR DS   V ++ + + DS V GE +KISSF TF V+ K +R
Sbjct: 4  KTLTRMDLADAVHSQVGLSRNDSADLVESVLSHVSDSLVSGETVKISSFGTFSVRDKAAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          VGRN +T +EV I PRRV+ F+ S ++K R+    +
Sbjct: 64 VGRNPKTGEEVPIHPRRVLTFRPSHLMKDRVAAGNK 99


>gi|253987885|ref|YP_003039241.1| DNA binding protein hu-alpha [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253779335|emb|CAQ82496.1| dna-binding protein hu-alpha (ns2) (hu-2) [Photorhabdus
          asymbiotica]
          Length = 90

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++   L++  +   + +  N I +S   G+++++  F TF V  +  R G
Sbjct: 1  MNKTELVDAIAESTDLTKAQAKAALESTLNAITESLKAGDSVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I    V  F A   LK  + 
Sbjct: 61 RNPQTGKEITIAAANVPAFSAGKALKDAVK 90


>gi|161524946|ref|YP_001579958.1| integration host factor subunit alpha [Burkholderia multivorans
           ATCC 17616]
 gi|160342375|gb|ABX15461.1| integration host factor, alpha subunit [Burkholderia multivorans
           ATCC 17616]
          Length = 136

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 35  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 94

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS  LK  + + 
Sbjct: 95  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 129


>gi|238927161|ref|ZP_04658921.1| DNA-binding protein HU [Selenomonas flueggei ATCC 43531]
 gi|238884943|gb|EEQ48581.1| DNA-binding protein HU [Selenomonas flueggei ATCC 43531]
          Length = 100

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 53/91 (58%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+ + +LV +++++  L++KD+ + V  LF  I  +   G+ +++  F TF VK + +R 
Sbjct: 10  TLNKQELVANVAEQASLTKKDAEKAVNALFETIKGALSEGDKVQLIGFGTFEVKDRKARK 69

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT + ++I   R  VFKA   LK  + 
Sbjct: 70  GRNPQTGKVIEIAASRNPVFKAGKALKDSVN 100


>gi|229086297|ref|ZP_04218475.1| DNA-binding protein HU [Bacillus cereus Rock3-44]
 gi|228696992|gb|EEL49799.1| DNA-binding protein HU [Bacillus cereus Rock3-44]
          Length = 90

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 58/90 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K++++   +S+K++T  V ++ + I ++   GE +++  F TF V+++ +R G
Sbjct: 1  MNKTELIKNVAQTAEISQKEATVVVQSVVDSITNTLAAGEKVQLIGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FKA   LK+ + 
Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKEAVK 90


>gi|163739611|ref|ZP_02147020.1| integration host factor, alpha subunit [Phaeobacter gallaeciensis
          BS107]
 gi|161387070|gb|EDQ11430.1| integration host factor, alpha subunit [Phaeobacter gallaeciensis
          BS107]
          Length = 100

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/96 (48%), Positives = 67/96 (69%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++ +E GLSR +S + V +L   + D+ VRGE +KISSF TF V+ K +R
Sbjct: 4  KTLTRMDLSEAVFREVGLSRNESAQLVESLLQHMSDALVRGEQVKISSFGTFSVRDKSAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          VGRN +T +EV I PRRV+ F+ S ++K R+ D  R
Sbjct: 64 VGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVADGNR 99


>gi|312884548|ref|ZP_07744252.1| integration host factor subunit alpha [Vibrio caribbenthicus ATCC
          BAA-2122]
 gi|309367860|gb|EFP95408.1| integration host factor subunit alpha [Vibrio caribbenthicus ATCC
          BAA-2122]
          Length = 97

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 54/92 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ ++ G S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAENLFEKLGYSKRDAKETVEMFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVEN 93


>gi|220931899|ref|YP_002508807.1| histone family protein DNA-binding protein [Halothermothrix orenii
           H 168]
 gi|219993209|gb|ACL69812.1| histone family protein DNA-binding protein [Halothermothrix orenii
           H 168]
          Length = 137

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 8/101 (7%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA------VRGEA--IKISSFATF 54
             +T++DLV +++ + GL++KDS + V  +F+ I +          G+   ++I  F TF
Sbjct: 37  NIMTKTDLVDAVAAKTGLTKKDSNKAVKAVFDSIVEHLSDESKKAEGDRDSVQIIGFGTF 96

Query: 55  HVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            VK + +R GRN QT +E+ I  R V VF+     K+ +  
Sbjct: 97  EVKDRSARKGRNPQTGEEITIPARTVPVFRPGKSFKEAVEK 137


>gi|192362010|ref|YP_001982578.1| himD/ihfB [Cellvibrio japonicus Ueda107]
 gi|190688175|gb|ACE85853.1| himD/ihfB [Cellvibrio japonicus Ueda107]
          Length = 121

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L++ I+++   L  KD    V  L + + D    GE I+I  F +F +  +  R 
Sbjct: 25  MTKSELIELITEKQNQLPIKDVEMAVKLLLDHMSDVLASGERIEIRGFGSFSLHYRAPRT 84

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           GRN +T + V +D + V  FK    ++ R+ + +
Sbjct: 85  GRNPKTGESVVLDGKYVPHFKPGKEMRDRVNESI 118


>gi|113867363|ref|YP_725852.1| integration host factor subunit alpha [Ralstonia eutropha H16]
 gi|113526139|emb|CAJ92484.1| integration host factor alpha subunit [Ralstonia eutropha H16]
          Length = 128

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 56/93 (60%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            T+T+++L + +  + GL++++S   V   F+ I ++  +G+++K+S F  F ++ K  R
Sbjct: 30  PTLTKAELAEMLFDQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 89

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            GRN +T + + I  RRVV F AS  LK  + +
Sbjct: 90  PGRNPKTGEVIPITARRVVTFHASQKLKGLVEE 122


>gi|30021822|ref|NP_833453.1| DNA-binding protein HU [Bacillus cereus ATCC 14579]
 gi|30263731|ref|NP_846108.1| DNA-binding protein HU [Bacillus anthracis str. Ames]
 gi|42782806|ref|NP_980053.1| DNA-binding protein HU [Bacillus cereus ATCC 10987]
 gi|47529146|ref|YP_020495.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor']
 gi|47568219|ref|ZP_00238922.1| DNA-binding protein HU [Bacillus cereus G9241]
 gi|49186575|ref|YP_029827.1| DNA-binding protein HU [Bacillus anthracis str. Sterne]
 gi|49479195|ref|YP_037793.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian
          str. 97-27]
 gi|52141761|ref|YP_085068.1| DNA-binding protein HU [Bacillus cereus E33L]
 gi|167636022|ref|ZP_02394328.1| DNA-binding protein HU [Bacillus anthracis str. A0442]
 gi|167639780|ref|ZP_02398049.1| DNA-binding protein HU [Bacillus anthracis str. A0193]
 gi|170706770|ref|ZP_02897228.1| DNA-binding protein HU [Bacillus anthracis str. A0389]
 gi|177652045|ref|ZP_02934591.1| DNA-binding protein HU [Bacillus anthracis str. A0174]
 gi|190568477|ref|ZP_03021384.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I]
 gi|196034180|ref|ZP_03101590.1| DNA-binding protein HU [Bacillus cereus W]
 gi|196038306|ref|ZP_03105615.1| DNA-binding protein HU [Bacillus cereus NVH0597-99]
 gi|196044455|ref|ZP_03111690.1| DNA-binding protein HU [Bacillus cereus 03BB108]
 gi|206968651|ref|ZP_03229606.1| DNA-binding protein HU [Bacillus cereus AH1134]
 gi|217961152|ref|YP_002339720.1| DNA-binding protein HU [Bacillus cereus AH187]
 gi|218235888|ref|YP_002368531.1| DNA-binding protein HU [Bacillus cereus B4264]
 gi|218898826|ref|YP_002447237.1| DNA-binding protein HU [Bacillus cereus G9842]
 gi|218904856|ref|YP_002452690.1| DNA-binding protein HU [Bacillus cereus AH820]
 gi|222097183|ref|YP_002531240.1| DNA-binding protein hu [Bacillus cereus Q1]
 gi|225865703|ref|YP_002751081.1| DNA-binding protein HU [Bacillus cereus 03BB102]
 gi|227813371|ref|YP_002813380.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684]
 gi|228922442|ref|ZP_04085744.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228928776|ref|ZP_04091810.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|229157305|ref|ZP_04285383.1| DNA-binding protein HU [Bacillus cereus ATCC 4342]
 gi|229162660|ref|ZP_04290617.1| DNA-binding protein HU [Bacillus cereus R309803]
 gi|229604479|ref|YP_002867967.1| DNA-binding protein HU [Bacillus anthracis str. A0248]
 gi|254683564|ref|ZP_05147424.1| HU family DNA-binding protein [Bacillus anthracis str.
          CNEVA-9066]
 gi|254721154|ref|ZP_05182945.1| HU family DNA-binding protein [Bacillus anthracis str. A1055]
 gi|254735764|ref|ZP_05193470.1| HU family DNA-binding protein [Bacillus anthracis str. Western
          North America USA6153]
 gi|254739537|ref|ZP_05197232.1| HU family DNA-binding protein [Bacillus anthracis str. Kruger B]
 gi|254751106|ref|ZP_05203145.1| HU family DNA-binding protein [Bacillus anthracis str. Vollum]
 gi|254759423|ref|ZP_05211448.1| HU family DNA-binding protein [Bacillus anthracis str. Australia
          94]
 gi|296504231|ref|YP_003665931.1| DNA-binding protein HU [Bacillus thuringiensis BMB171]
 gi|301055218|ref|YP_003793429.1| histone family protein DNA-binding protein [Bacillus anthracis
          CI]
 gi|29897378|gb|AAP10654.1| DNA-binding protein HU [Bacillus cereus ATCC 14579]
 gi|30258375|gb|AAP27594.1| DNA-binding protein HU [Bacillus anthracis str. Ames]
 gi|42738733|gb|AAS42661.1| DNA-binding protein HU [Bacillus cereus ATCC 10987]
 gi|47504294|gb|AAT32970.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor']
 gi|47555047|gb|EAL13395.1| DNA-binding protein HU [Bacillus cereus G9241]
 gi|49180502|gb|AAT55878.1| DNA-binding protein HU [Bacillus anthracis str. Sterne]
 gi|49330751|gb|AAT61397.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian
          str. 97-27]
 gi|51975230|gb|AAU16780.1| DNA-binding protein HU [Bacillus cereus E33L]
 gi|167512181|gb|EDR87558.1| DNA-binding protein HU [Bacillus anthracis str. A0193]
 gi|167528534|gb|EDR91296.1| DNA-binding protein HU [Bacillus anthracis str. A0442]
 gi|170128188|gb|EDS97057.1| DNA-binding protein HU [Bacillus anthracis str. A0389]
 gi|172082414|gb|EDT67479.1| DNA-binding protein HU [Bacillus anthracis str. A0174]
 gi|190560481|gb|EDV14459.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I]
 gi|195993254|gb|EDX57212.1| DNA-binding protein HU [Bacillus cereus W]
 gi|196024490|gb|EDX63162.1| DNA-binding protein HU [Bacillus cereus 03BB108]
 gi|196030714|gb|EDX69312.1| DNA-binding protein HU [Bacillus cereus NVH0597-99]
 gi|206735692|gb|EDZ52850.1| DNA-binding protein HU [Bacillus cereus AH1134]
 gi|217063322|gb|ACJ77572.1| DNA-binding protein HU [Bacillus cereus AH187]
 gi|218163845|gb|ACK63837.1| DNA-binding protein HU [Bacillus cereus B4264]
 gi|218538783|gb|ACK91181.1| DNA-binding protein HU [Bacillus cereus AH820]
 gi|218545282|gb|ACK97676.1| DNA-binding protein HU [Bacillus cereus G9842]
 gi|221241241|gb|ACM13951.1| DNA-binding protein HU [Bacillus cereus Q1]
 gi|225787211|gb|ACO27428.1| DNA-binding protein HU [Bacillus cereus 03BB102]
 gi|227004634|gb|ACP14377.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684]
 gi|228620542|gb|EEK77411.1| DNA-binding protein HU [Bacillus cereus R309803]
 gi|228626032|gb|EEK82781.1| DNA-binding protein HU [Bacillus cereus ATCC 4342]
 gi|228830861|gb|EEM76464.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228837156|gb|EEM82495.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|229268887|gb|ACQ50524.1| DNA-binding protein HU [Bacillus anthracis str. A0248]
 gi|296325283|gb|ADH08211.1| DNA-binding protein HU [Bacillus thuringiensis BMB171]
 gi|300377387|gb|ADK06291.1| histone family protein DNA-binding protein [Bacillus cereus
          biovar anthracis str. CI]
 gi|324327620|gb|ADY22880.1| HU family DNA-binding protein [Bacillus thuringiensis serovar
          finitimus YBT-020]
 gi|326941437|gb|AEA17333.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 90

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 57/90 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K++++   +S+K++T  V T+   I ++   GE +++  F TF V+++ +R G
Sbjct: 1  MNKTELIKNVAQNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FKA   LK+ + 
Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKEAVK 90


>gi|301629967|ref|XP_002944103.1| PREDICTED: DNA-binding protein HU-beta-like [Xenopus (Silurana)
           tropicalis]
          Length = 139

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 46/90 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L++ I+    +S+  + R + +    +  +  +G+ + +  F TF V ++ +R G
Sbjct: 50  VNKTELIEHIATHADISKAAAARALESTIEAVKKTLKKGDTVSLVGFGTFAVGKRAARTG 109

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN +T   +KI   +V  F+    LK  + 
Sbjct: 110 RNPRTGATIKIKAAKVPKFRPGKALKDALN 139


>gi|259419005|ref|ZP_05742922.1| integration host factor, alpha subunit [Silicibacter sp. TrichCH4B]
 gi|259345227|gb|EEW57081.1| integration host factor, alpha subunit [Silicibacter sp. TrichCH4B]
          Length = 109

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/96 (47%), Positives = 67/96 (69%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KTITR DL +++ +E GLSR +S + V ++   + D+ VRGE +KISSF TF V+ K +R
Sbjct: 13  KTITRMDLSEAVFREVGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDKSAR 72

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           VGRN +T +EV I PRRV+ F+ S ++K R+ D  +
Sbjct: 73  VGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVADGNK 108


>gi|238919788|ref|YP_002933303.1| integration host factor subunit alpha [Edwardsiella ictaluri
          93-146]
 gi|259491531|sp|C5B852|IHFA_EDWI9 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|238869357|gb|ACR69068.1| integration host factor, alpha subunit, putative [Edwardsiella
          ictaluri 93-146]
          Length = 98

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 54/95 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +++ I  RRVV F+    LK R+ +   
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKCRVENATP 96


>gi|83644982|ref|YP_433417.1| nucleoid DNA-binding protein [Hahella chejuensis KCTC 2396]
 gi|83633025|gb|ABC28992.1| Bacterial nucleoid DNA-binding protein [Hahella chejuensis KCTC
          2396]
          Length = 90

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++    +S+  + R +  +   + ++  +GE + +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAVAASADISKAAAGRALDAVVESVTEALKKGEQVTLIGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   +KID  +V  FKA   LK  + 
Sbjct: 61 RNPQTGATIKIDAAKVPSFKAGKALKDAVN 90


>gi|312882504|ref|ZP_07742245.1| DNA-binding protein HU-beta [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369904|gb|EFP97415.1| DNA-binding protein HU-beta [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 90

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 48/87 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I++   LS+  + R +    + + D+   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVEKIAESADLSKASAGRALDAFIDAVGDTLQSGDQVALVGFGTFSVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T +E++I   +V  FKA   LK 
Sbjct: 61 RNPKTGEEIQIAEAKVPSFKAGKALKD 87


>gi|189350306|ref|YP_001945934.1| integration host factor subunit alpha [Burkholderia multivorans
           ATCC 17616]
 gi|189334328|dbj|BAG43398.1| integration host factor alpha subunit [Burkholderia multivorans
           ATCC 17616]
          Length = 133

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 32  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 91

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS  LK  + + 
Sbjct: 92  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 126


>gi|239996231|ref|ZP_04716755.1| integration host factor subunit alpha [Alteromonas macleodii ATCC
          27126]
          Length = 99

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 54/93 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ G++++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAEHLFEKLGINKRDAKDLVELFFEEIKGALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +++ I  RRVV F+    LK R+ + 
Sbjct: 62 GRNPKTGEDIPIKARRVVTFRPGQKLKSRVENS 94


>gi|332141057|ref|YP_004426795.1| integration host factor subunit alpha [Alteromonas macleodii str.
          'Deep ecotype']
 gi|226707368|sp|B4RS41|IHFA_ALTMD RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|327551079|gb|AEA97797.1| integration host factor subunit alpha [Alteromonas macleodii str.
          'Deep ecotype']
          Length = 99

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 54/93 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ G++++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAEHLFEKLGINKRDAKDLVELFFEEIKGALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +++ I  RRVV F+    LK R+ + 
Sbjct: 62 GRNPKTGEDIPIKARRVVTFRPGQKLKSRVENS 94


>gi|218290666|ref|ZP_03494757.1| histone family protein DNA-binding protein [Alicyclobacillus
          acidocaldarius LAA1]
 gi|258510204|ref|YP_003183638.1| histone family protein DNA-binding protein [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
 gi|218239331|gb|EED06529.1| histone family protein DNA-binding protein [Alicyclobacillus
          acidocaldarius LAA1]
 gi|257476930|gb|ACV57249.1| histone family protein DNA-binding protein [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 90

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 48/87 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  ++++  L +KD+   V  +F  I ++   GE ++I  F TF  + + +R G
Sbjct: 1  MNKMELINRVAEKTNLKKKDAESAVNAVFEIIEEALANGEKVQIIGFGTFETRSRAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN QT + ++I    V  FK  + LK+
Sbjct: 61 RNPQTGEVIEIPASTVPAFKPGNKLKE 87


>gi|114704822|ref|ZP_01437730.1| integration host factor alpha subunit [Fulvimarina pelagi HTCC2506]
 gi|114539607|gb|EAU42727.1| integration host factor alpha subunit [Fulvimarina pelagi HTCC2506]
          Length = 119

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/111 (44%), Positives = 75/111 (67%), Gaps = 1/111 (0%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +++ ++ GLSR +S   V  +  E+C++   GEA+KISSF +F V+ K  
Sbjct: 3   GKTLTRADLSEAVFRKIGLSRTESATLVEMVLEEVCETISSGEAVKISSFGSFLVRDKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM-RGRKCNKDDVTSPS 111
           RVGRN +T +EV I PR+V VFK S++LK+RI++   R  + + DD   P+
Sbjct: 63  RVGRNPKTGEEVPISPRKVTVFKPSNVLKERILEAHSRKNRADNDDTYVPA 113


>gi|332637851|ref|ZP_08416714.1| DNA-binding protein HU [Weissella cibaria KACC 11862]
          Length = 91

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + +LV  ++   GL++KD+T  V  +F  I D+  +G+ +++  F  F V+ + +R GR
Sbjct: 3  NKQELVNDVATTTGLTKKDATAAVDAVFASIQDTLAKGDKVQLIGFGNFEVRTRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E++I   ++  FK    LK  I 
Sbjct: 63 NPQTGEEIEIAASKIPAFKPGKALKDAIK 91


>gi|58337267|ref|YP_193852.1| DNA-binding protein II HB [Lactobacillus acidophilus NCFM]
 gi|227903852|ref|ZP_04021657.1| DNA-binding protein HU [Lactobacillus acidophilus ATCC 4796]
 gi|315038200|ref|YP_004031768.1| DNA-binding protein II HB [Lactobacillus amylovorus GRL 1112]
 gi|325956652|ref|YP_004292064.1| DNA-binding protein II HB [Lactobacillus acidophilus 30SC]
 gi|58254584|gb|AAV42821.1| DNA-binding protein II HB [Lactobacillus acidophilus NCFM]
 gi|227868739|gb|EEJ76160.1| DNA-binding protein HU [Lactobacillus acidophilus ATCC 4796]
 gi|312276333|gb|ADQ58973.1| DNA-binding protein II HB [Lactobacillus amylovorus GRL 1112]
 gi|323466655|gb|ADX70342.1| Integration host factor, beta subunit [Lactobacillus helveticus
          H10]
 gi|325333217|gb|ADZ07125.1| DNA-binding protein II HB [Lactobacillus acidophilus 30SC]
 gi|327183477|gb|AEA31924.1| DNA-binding protein II HB [Lactobacillus amylovorus GRL 1118]
          Length = 91

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 49/89 (55%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV  ++ +  L++K+    V  +F  I D+  +GE +++  F TF V+ + +R GR
Sbjct: 3  NKAELVSEVASKTKLTKKEVAAAVDAIFGSIQDNLAKGEKVQLIGFGTFEVRHRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E++I    V  FK    LK+ + 
Sbjct: 63 NPQTGDEIEIPASEVPAFKPGKALKEAVK 91


>gi|227892106|ref|ZP_04009911.1| DNA-binding protein HU [Lactobacillus salivarius ATCC 11741]
 gi|301300365|ref|ZP_07206569.1| DNA-binding protein HU [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|227866089|gb|EEJ73510.1| DNA-binding protein HU [Lactobacillus salivarius ATCC 11741]
 gi|300852049|gb|EFK79729.1| DNA-binding protein HU [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 91

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 54/91 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV++I+++ G ++K++   V+     + ++ V G+ ++I  F  F V+++ +R G
Sbjct: 1  MNKNELVEAIAEKMGTTKKEAEAAVSAFTETVKEALVDGKKVQIIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E++I   +V  FK    LK  +  
Sbjct: 61 RNPQTGKEIEIPASKVPAFKPGKGLKDAVNK 91


>gi|227879097|ref|ZP_03996986.1| DNA-binding protein HU [Lactobacillus crispatus JV-V01]
 gi|256843086|ref|ZP_05548574.1| DNA-binding protein II HB [Lactobacillus crispatus 125-2-CHN]
 gi|256850262|ref|ZP_05555691.1| DNA-binding protein II HB [Lactobacillus crispatus MV-1A-US]
 gi|262046346|ref|ZP_06019308.1| DNA-binding protein II HB [Lactobacillus crispatus MV-3A-US]
 gi|293379769|ref|ZP_06625901.1| DNA-binding protein HU [Lactobacillus crispatus 214-1]
 gi|295692882|ref|YP_003601492.1| DNA-binding protein hu [Lactobacillus crispatus ST1]
 gi|227861338|gb|EEJ68968.1| DNA-binding protein HU [Lactobacillus crispatus JV-V01]
 gi|256614506|gb|EEU19707.1| DNA-binding protein II HB [Lactobacillus crispatus 125-2-CHN]
 gi|256712899|gb|EEU27891.1| DNA-binding protein II HB [Lactobacillus crispatus MV-1A-US]
 gi|260573217|gb|EEX29775.1| DNA-binding protein II HB [Lactobacillus crispatus MV-3A-US]
 gi|290923678|gb|EFE00549.1| DNA-binding protein HU [Lactobacillus crispatus 214-1]
 gi|295030988|emb|CBL50467.1| DNA-binding protein HU [Lactobacillus crispatus ST1]
          Length = 91

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 47/89 (52%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV  ++ +  L++K     V  + + I ++  +GE +++  F TF V+ + +R GR
Sbjct: 3  NKAELVSEVASKTKLTKKQVANTVDAILDSIQENLAKGEKVQLIGFGTFEVRHRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E++I    V  FK    LK  + 
Sbjct: 63 NPQTGDEIEIPASEVPAFKPGKALKDAVK 91


>gi|229918705|ref|YP_002887351.1| histone family protein DNA-binding protein [Exiguobacterium sp.
          AT1b]
 gi|229470134|gb|ACQ71906.1| histone family protein DNA-binding protein [Exiguobacterium sp.
          AT1b]
          Length = 90

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 57/90 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+++++++  +S+K++T+ V   F  I ++   GE I++  F TF V+++ +R G
Sbjct: 1  MNKTELIQAVTEKADVSKKEATKIVEATFESITEALQNGEKIQLIGFGTFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T ++++I   +V  FKA   LK  + 
Sbjct: 61 RNPRTKEDIEIPASKVPAFKAGKALKDAVK 90


>gi|117620625|ref|YP_856545.1| DNA-binding protein HU-beta [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
 gi|145298874|ref|YP_001141715.1| nucleoid DNA-binding protein HU-beta [Aeromonas salmonicida
          subsp. salmonicida A449]
 gi|330829915|ref|YP_004392867.1| histone-like DNA-binding protein [Aeromonas veronii B565]
 gi|117562032|gb|ABK38980.1| DNA-binding protein HU-beta [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
 gi|142851646|gb|ABO89967.1| Bacterial nucleoid DNA-binding protein HU-beta [Aeromonas
          salmonicida subsp. salmonicida A449]
 gi|328805051|gb|AEB50250.1| histone-like DNA-binding protein [Aeromonas veronii B565]
          Length = 90

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +    + + ++   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIADGADISKAAAGRALDAFIDAVGEALKEGDQVALVGFGTFAVRERAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   ++I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGATIEIAAGKVPAFKAGKALKDAVN 90


>gi|89069686|ref|ZP_01157023.1| integration host factor, alpha subunit [Oceanicola granulosus
          HTCC2516]
 gi|89044766|gb|EAR50872.1| integration host factor, alpha subunit [Oceanicola granulosus
          HTCC2516]
          Length = 101

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/97 (47%), Positives = 66/97 (68%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +KT+TR DL +++  E GLSR DS   V ++   + D+ VRGE +KISSF TF V++K +
Sbjct: 3  NKTLTRMDLAEAVHAEVGLSRNDSAELVESILTHVSDALVRGETVKISSFGTFSVREKAA 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RVGRN +T +EV I PRRV+ F+ S ++K R+    R
Sbjct: 63 RVGRNPKTGEEVPIHPRRVLTFRPSHLMKDRVAAGNR 99


>gi|326204212|ref|ZP_08194072.1| histone family protein DNA-binding protein [Clostridium
          papyrosolvens DSM 2782]
 gi|325985723|gb|EGD46559.1| histone family protein DNA-binding protein [Clostridium
          papyrosolvens DSM 2782]
          Length = 91

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+ SI+ + GL++K+S   +    + + ++   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSDLINSIATKSGLNKKNSEAALNAFISSVEETLKAGDKVTLVGFGTFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +  VFKA   LK  + 
Sbjct: 61 RNPQTKEEITIPASKAPVFKAGKGLKDNVN 90


>gi|260779041|ref|ZP_05887933.1| integration host factor alpha subunit [Vibrio coralliilyticus
          ATCC BAA-450]
 gi|260605205|gb|EEX31500.1| integration host factor alpha subunit [Vibrio coralliilyticus
          ATCC BAA-450]
          Length = 98

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 55/93 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ ++ G S++D+   V   F EI  +   GE +K+S F  F +++K  R 
Sbjct: 2  ALTKADLAENLFEKLGYSKRDAKETVEAFFEEIRKALESGEQVKLSGFGNFDLREKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +++ I  RRVV F+    LK R+ + 
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVENA 94


>gi|221642274|ref|YP_002533361.1| small DNA-binding protein (bacterial histone-like family)
          [Bacillus cereus Q1]
 gi|228962916|ref|ZP_04124153.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|221243209|gb|ACM15918.1| small DNA-binding protein (bacterial histone-like family)
          [Bacillus cereus Q1]
 gi|228796774|gb|EEM44147.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani
          str. T13001]
          Length = 92

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K ++ +  L++  ++  V  +   I  +   GE +++  F TF V+++ +R G
Sbjct: 1  MNKSELIKQVAIQSELTKPQASLAVDAVLESIQHALQNGEHVQLLGFGTFEVRERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T + + I   +   FKA   LK+ + 
Sbjct: 61 RNPHTGEALTIPAGKTPAFKAGKALKEAVK 90


>gi|118590043|ref|ZP_01547447.1| Histone-like DNA-binding protein [Stappia aggregata IAM 12614]
 gi|118437540|gb|EAV44177.1| Histone-like DNA-binding protein [Stappia aggregata IAM 12614]
          Length = 91

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++ GL++  +   V   F+ +  +   G+ ++I  F  F V ++ +  G
Sbjct: 1  MNKNDLIAAVAEKTGLTKAQAGEAVDATFDAVTQTLKSGDEVRIIGFGNFTVSERAATEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + ++I   +   FKA   LK  + 
Sbjct: 61 RNPRTGETIQIPASKTPKFKAGKGLKDAVN 90


>gi|92113928|ref|YP_573856.1| integration host factor, alpha subunit [Chromohalobacter
          salexigens DSM 3043]
 gi|123387450|sp|Q1QWK1|IHFA_CHRSD RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|91797018|gb|ABE59157.1| integration host factor, alpha subunit [Chromohalobacter
          salexigens DSM 3043]
          Length = 102

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 50/92 (54%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL + +  E G S++++   V   F EI       E +K+S F  F ++ K  R 
Sbjct: 3  ALTKADLAEHLHAELGFSKREAKSMVEAFFEEIRSCLRENEQVKLSGFGNFDLRDKRERP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +E+ I  RRVV F+    LK R+ D
Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKARVED 94


>gi|58580659|ref|YP_199675.1| histone-like protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58425253|gb|AAW74290.1| histone-like protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 145

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 49/90 (54%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L+  ++    +S+ ++ R V  + +EI  +  +G+A+ +  F TF V+++  R G
Sbjct: 56  MNKTELIDGVAAAADISKAEAGRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERTG 115

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN +T   +KI   +   FKA   LK  + 
Sbjct: 116 RNPKTGDSIKIAASKNPAFKAGKALKDAVN 145


>gi|291616552|ref|YP_003519294.1| HupB [Pantoea ananatis LMG 20103]
 gi|317047178|ref|YP_004114826.1| histone family protein DNA-binding protein [Pantoea sp. At-9b]
 gi|291151582|gb|ADD76166.1| HupB [Pantoea ananatis LMG 20103]
 gi|316948795|gb|ADU68270.1| histone family protein DNA-binding protein [Pantoea sp. At-9b]
 gi|327392984|dbj|BAK10406.1| DNA-binding protein HU-beta HupB [Pantoea ananatis AJ13355]
          Length = 93

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R +      + D+   G+ + +  F TF V+++ +R G
Sbjct: 4  VNKSQLIDKIAADADISKAAAGRVLDAFMGSVSDALKGGDEVALVGFGTFSVRERAARTG 63

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F+A   LK  + 
Sbjct: 64 RNPQTGKEITIPAGKVPGFRAGKALKDAVN 93


>gi|194289389|ref|YP_002005296.1| integration host factor subunit alpha [Cupriavidus taiwanensis LMG
           19424]
 gi|193223224|emb|CAQ69229.1| integration host factor (IHF), alpha subunit [Cupriavidus
           taiwanensis LMG 19424]
          Length = 136

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 56/93 (60%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            T+T+++L + +  + GL++++S   V   F+ I ++  +G+++K+S F  F ++ K  R
Sbjct: 38  PTLTKAELAEMLFDQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 97

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            GRN +T + + I  RRVV F AS  LK  + +
Sbjct: 98  PGRNPKTGEVIPITARRVVTFHASQKLKGLVEE 130


>gi|221066200|ref|ZP_03542305.1| integration host factor, alpha subunit [Comamonas testosteroni
           KF-1]
 gi|220711223|gb|EED66591.1| integration host factor, alpha subunit [Comamonas testosteroni
           KF-1]
          Length = 108

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 35/98 (35%), Positives = 54/98 (55%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S  +T++ L   +  E GL+++++   V   F+ I    V GE +K+S F  F ++ K  
Sbjct: 10  SPALTKAQLADLLFDEIGLNKREAKDMVDAFFDLISQKLVEGEDVKLSGFGNFQIRTKAP 69

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           R GRN +T + + I  RRVV F ASS LK+ I  +  G
Sbjct: 70  RPGRNPRTGELIPIAARRVVTFHASSKLKELIQGESSG 107


>gi|212709049|ref|ZP_03317177.1| hypothetical protein PROVALCAL_00081 [Providencia alcalifaciens
          DSM 30120]
 gi|212688338|gb|EEB47866.1| hypothetical protein PROVALCAL_00081 [Providencia alcalifaciens
          DSM 30120]
          Length = 90

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++   L++  +   +    + I DS   GEA+++  F TF V  + +R G
Sbjct: 1  MNKTELVDAIAESADLTKTQAKAALEATLSAISDSLKSGEAVQLVGFGTFKVSHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I    V  F A   LK  + 
Sbjct: 61 RNPQTKAEIQIPATTVPAFSAGKALKDAVK 90


>gi|251794085|ref|YP_003008816.1| histone family protein DNA-binding protein [Paenibacillus sp.
          JDR-2]
 gi|247541711|gb|ACS98729.1| histone family protein DNA-binding protein [Paenibacillus sp.
          JDR-2]
          Length = 90

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+ + GL+++D    +     E+ D+   G+ +++  F TF  +++  RVG
Sbjct: 1  MNKTDLINNIATKSGLTKRDVEAVLNGFLGEVTDALAGGDKVQLIGFGTFETRKRSGRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  FKA + LK  I 
Sbjct: 61 RNPQTGKEISIPESKVPAFKAGNKLKDAIK 90


>gi|308050305|ref|YP_003913871.1| histone family protein DNA-binding protein [Ferrimonas balearica
          DSM 9799]
 gi|307632495|gb|ADN76797.1| histone family protein DNA-binding protein [Ferrimonas balearica
          DSM 9799]
          Length = 90

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R + +  + I  S   GE I +  F TF V+++  R G
Sbjct: 1  MNKSQLIDQIASGADISKAAAGRALDSFIDAITASLKDGEKISLVGFGTFEVRERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI   ++  FKA   LK  + 
Sbjct: 61 RNPQTGKEIKIAAAKIPAFKAGKALKDAVN 90


>gi|299533562|ref|ZP_07046938.1| integration host factor subunit alpha [Comamonas testosteroni S44]
 gi|298718468|gb|EFI59449.1| integration host factor subunit alpha [Comamonas testosteroni S44]
          Length = 108

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 35/98 (35%), Positives = 54/98 (55%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S  +T++ L   +  E GL+++++   V   F+ I    V GE +K+S F  F ++ K  
Sbjct: 10  SPALTKAQLADLLFDEIGLNKREAKDMVDAFFDLISQKLVDGEDVKLSGFGNFQIRTKAP 69

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           R GRN +T + + I  RRVV F ASS LK+ I  +  G
Sbjct: 70  RPGRNPRTGELIPIAARRVVTFHASSKLKELIQGESSG 107


>gi|269468958|gb|EEZ80539.1| histone family protein DNA-binding [uncultured SUP05 cluster
          bacterium]
          Length = 91

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDLV +I++  GL++ D+ R +      I  +   G+ + I+ F +F V+ + +R G
Sbjct: 1  MNKSDLVAAIAETSGLTKADAARALDATTGAITSALSGGDNVAITGFGSFLVRDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT   ++I   +V  FKA  +LK+ +  
Sbjct: 61 RNPQTGASIQIKASKVPAFKAGKLLKESVNK 91


>gi|238919015|ref|YP_002932529.1| DNA-binding protein HU-beta [Edwardsiella ictaluri 93-146]
 gi|238868583|gb|ACR68294.1| DNA-binding protein HU-beta [Edwardsiella ictaluri 93-146]
          Length = 90

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I++   +S+  + R +      + +S   G+A+ +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAEGADISKAAAGRALDAFIASVTESVQEGDAVALVGFGTFDVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F+A   LK  + 
Sbjct: 61 RNPQTGKEINIPAAKVPGFRAGKALKDAVN 90


>gi|163751872|ref|ZP_02159086.1| DNA-binding protein, HU family [Shewanella benthica KT99]
 gi|161328222|gb|EDP99386.1| DNA-binding protein, HU family [Shewanella benthica KT99]
          Length = 90

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + +    + DS   G+ I +  F TF V+Q+  R G
Sbjct: 1  MNKSELIEKIATGADISKAAAGRALDSFIGAVTDSLKNGDKISLVGFGTFEVRQRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E+KI    +  FKA   LK  + 
Sbjct: 61 RNPQTGAEIKIAAANIPAFKAGKALKDAVN 90


>gi|27364627|ref|NP_760155.1| DNA-binding protein HU-alpha [Vibrio vulnificus CMCP6]
 gi|320155021|ref|YP_004187400.1| DNA-binding protein HU-alpha [Vibrio vulnificus MO6-24/O]
 gi|27360772|gb|AAO09682.1| DNA-binding protein HU-alpha [Vibrio vulnificus CMCP6]
 gi|319930333|gb|ADV85197.1| DNA-binding protein HU-alpha [Vibrio vulnificus MO6-24/O]
          Length = 90

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +    N + D+   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLNGVTDALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  E++I    V  F A   LK+ + 
Sbjct: 61 RNPKTGDEIQIAAANVPAFVAGKALKESVN 90


>gi|258513573|ref|YP_003189795.1| histone family protein DNA-binding protein [Desulfotomaculum
          acetoxidans DSM 771]
 gi|257777278|gb|ACV61172.1| histone family protein DNA-binding protein [Desulfotomaculum
          acetoxidans DSM 771]
          Length = 96

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ S+++E  L++KD+ + V  +   I  +  +GE +++  F TF +K + +R G
Sbjct: 1  MNKADLISSVAEEAELTKKDAEKAVNGVLKCIEMALAKGEKVQLVGFGTFDIKYRKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I+   V VFKA   L+  + 
Sbjct: 61 RNPQTGEEIDIEAANVPVFKAGKDLRDAVE 90


>gi|226941667|ref|YP_002796741.1| integration host factor subunit alpha [Laribacter hongkongensis
          HLHK9]
 gi|226716594|gb|ACO75732.1| IhfA [Laribacter hongkongensis HLHK9]
          Length = 101

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 54/91 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+++L   +  + GLS+++S   V + F EI  +   G+++K+S F  F ++ K  R 
Sbjct: 2  TLTKAELADLLFDKVGLSKRESKDMVESFFEEIRVALEEGDSVKLSGFGNFQLRDKPQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  RRVV F AS  LK  + 
Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKGMVE 92


>gi|261344361|ref|ZP_05972005.1| DNA-binding protein HU [Providencia rustigianii DSM 4541]
 gi|282567632|gb|EFB73167.1| DNA-binding protein HU [Providencia rustigianii DSM 4541]
          Length = 90

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++   L++  +   +    + I DS  +GEA+++  F TF V  + +R G
Sbjct: 1  MNKTELVDAIAESTDLTKTQAKSALEATLSAISDSLKKGEAVQLVGFGTFKVSHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I    V  F A   LK  + 
Sbjct: 61 RNPQTKAEIQIPATTVPAFSAGKALKDAVK 90


>gi|259908572|ref|YP_002648928.1| integration host factor subunit alpha [Erwinia pyrifoliae Ep1/96]
 gi|224964194|emb|CAX55701.1| Integration host factor alpha-subunit (IHF-alpha) [Erwinia
          pyrifoliae Ep1/96]
 gi|283478541|emb|CAY74457.1| Integration host factor subunit alpha (IHF-alpha) [Erwinia
          pyrifoliae DSM 12163]
 gi|310767528|gb|ADP12478.1| integration host factor subunit alpha [Erwinia sp. Ejp617]
          Length = 99

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 54/95 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +++ I  RRVV F+    LK R+ +   
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENATP 96


>gi|209694401|ref|YP_002262329.1| DNA-binding protein HU-beta [Aliivibrio salmonicida LFI1238]
 gi|208008352|emb|CAQ78507.1| DNA-binding protein HU-beta [Aliivibrio salmonicida LFI1238]
          Length = 98

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 48/91 (52%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            T+ +S LV  I++   +S+  + R +  L   + ++   G+ + +  F +F V+++ +
Sbjct: 6  GNTVNKSQLVDQIAENADISKAAAGRALDALVETVTETLKSGDQVTLVGFGSFIVRERAA 65

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          R GRN +T + ++I   +V  FKA   LK  
Sbjct: 66 RTGRNPKTGEAIEISAAKVPAFKAGKALKDA 96


>gi|328467367|gb|EGF38445.1| DNA-binding protein II HB [Lactobacillus helveticus MTCC 5463]
          Length = 91

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 49/88 (55%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV  ++ +  L++K+    +  +F  I D+  +GE +++  F TF V+ + +R GR
Sbjct: 3  NKAELVSEVASKTKLTKKEVAAAIDAIFGSIQDNLAKGEKVQLIGFGTFEVRHRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93
          N QT  E++I    V  FK    LK+ +
Sbjct: 63 NPQTGDEIEIPASEVPAFKPGKALKEAV 90


>gi|152995752|ref|YP_001340587.1| histone family protein DNA-binding protein [Marinomonas sp.
          MWYL1]
 gi|150836676|gb|ABR70652.1| histone family protein DNA-binding protein [Marinomonas sp.
          MWYL1]
          Length = 90

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    LS+  ++  +      I  +  +G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAASADLSKASASNALDATLKAIEAALAKGDQVTLVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGEEIQIKAAKVPGFKAGKGLKDAVN 90


>gi|254454267|ref|ZP_05067704.1| integration host factor, alpha subunit [Octadecabacter antarcticus
           238]
 gi|198268673|gb|EDY92943.1| integration host factor, alpha subunit [Octadecabacter antarcticus
           238]
          Length = 100

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 65/97 (67%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR DL  ++ +E GLSR +S   V ++  ++ D+   G+++KISSF TF ++ K +R
Sbjct: 4   KTLTRMDLADAVHEEVGLSRNESADLVESVLTQMSDALAGGDSVKISSFGTFSIRDKAAR 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           +GRN +T +EV I PRRV+ F+ S ++K R+    +G
Sbjct: 64  IGRNPKTGEEVPITPRRVLSFRPSHLMKDRVAAGNKG 100


>gi|126739445|ref|ZP_01755138.1| integration host factor, alpha subunit [Roseobacter sp.
          SK209-2-6]
 gi|254477557|ref|ZP_05090943.1| integration host factor, alpha subunit [Ruegeria sp. R11]
 gi|126719545|gb|EBA16254.1| integration host factor, alpha subunit [Roseobacter sp.
          SK209-2-6]
 gi|214031800|gb|EEB72635.1| integration host factor, alpha subunit [Ruegeria sp. R11]
          Length = 100

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/96 (47%), Positives = 67/96 (69%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++ +E GLSR +S + V ++   + D+ VRGE +KISSF TF V+ K +R
Sbjct: 4  KTLTRMDLSEAVFREVGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDKSAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          VGRN +T +EV I PRRV+ F+ S ++K R+ D  R
Sbjct: 64 VGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVADGNR 99


>gi|118260|sp|P28080|DBHA_VIBPR RecName: Full=DNA-binding protein HU-alpha
 gi|141878|gb|AAA21939.1| histone-like protein [Vibrio proteolyticus]
          Length = 90

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +    + + D+   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLDGVTDALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  E++I    V  F A   LK  + 
Sbjct: 61 RNPKTGAEIQIAAANVPAFVAGKALKDAVK 90


>gi|242240289|ref|YP_002988470.1| transcriptional regulator HU subunit beta [Dickeya dadantii
          Ech703]
 gi|242132346|gb|ACS86648.1| histone family protein DNA-binding protein [Dickeya dadantii
          Ech703]
          Length = 90

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R +  +   + +S   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAADADISKAAAGRVLDAIIGSVTESLKAGDDVALVGFGTFAVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F+A   LK  + 
Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKALKDAVN 90


>gi|260776379|ref|ZP_05885274.1| DNA-binding protein HU-beta [Vibrio coralliilyticus ATCC BAA-450]
 gi|261253456|ref|ZP_05946029.1| DNA-binding protein HU-beta [Vibrio orientalis CIP 102891]
 gi|323495053|ref|ZP_08100142.1| DNA-binding protein HU-beta [Vibrio brasiliensis LMG 20546]
 gi|260607602|gb|EEX33867.1| DNA-binding protein HU-beta [Vibrio coralliilyticus ATCC BAA-450]
 gi|260936847|gb|EEX92836.1| DNA-binding protein HU-beta [Vibrio orientalis CIP 102891]
 gi|323310710|gb|EGA63885.1| DNA-binding protein HU-beta [Vibrio brasiliensis LMG 20546]
          Length = 90

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 47/87 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I++   LS+  + R +      + D+   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVEKIAENADLSKASAGRALDAFIEAVGDTLQSGDQVALVGFGTFSVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T +E++I   +V  FKA   LK 
Sbjct: 61 RNPKTGEEIQIAEAKVPAFKAGKALKD 87


>gi|226953082|ref|ZP_03823546.1| DNA-binding protein HU-beta [Acinetobacter sp. ATCC 27244]
 gi|294650671|ref|ZP_06728025.1| DNA-binding protein HU-beta family protein [Acinetobacter
          haemolyticus ATCC 19194]
 gi|226836174|gb|EEH68557.1| DNA-binding protein HU-beta [Acinetobacter sp. ATCC 27244]
 gi|292823462|gb|EFF82311.1| DNA-binding protein HU-beta family protein [Acinetobacter
          haemolyticus ATCC 19194]
          Length = 90

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+++ G+S+ D+ + +      I ++  +G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAEKGGVSKSDAGKALDATIASITEALKKGDTVTLVGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E++I   +V  FKA   LK  + 
Sbjct: 61 RNPKTGEELQIKASKVPSFKAGKGLKDSVA 90


>gi|289207761|ref|YP_003459827.1| histone family protein DNA-binding protein [Thioalkalivibrio sp.
          K90mix]
 gi|288943392|gb|ADC71091.1| histone family protein DNA-binding protein [Thioalkalivibrio sp.
          K90mix]
          Length = 90

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+ E  + +  + R +  +   + D+  +G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSELIDAIAAEADVPKAQAGRMLDAMVTVVGDTLAKGDQVSLVGFGTFLVREREARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T Q ++I   +   FKA   LK R+ 
Sbjct: 61 RNPRTGQSIQIAASKTPSFKAGKALKDRVN 90


>gi|326316778|ref|YP_004234450.1| histone family protein DNA-binding protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323373614|gb|ADX45883.1| histone family protein DNA-binding protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 136

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 3/110 (2%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +TRSDLV+ ++  FG L+++D+   V T+ + + D+ VRG  I++  F +F V ++  R+
Sbjct: 28  MTRSDLVEELAARFGQLTQRDAEAAVKTILDAVGDALVRGHRIEVRGFGSFSVNRRPPRM 87

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           GRN ++ + V I  +RV  FK    L++ +  D R  +      T  S +
Sbjct: 88  GRNPRSGEAVHIPEKRVPHFKPGKALREAV--DRRTAEMGIGAATDASDA 135


>gi|297616318|ref|YP_003701477.1| histone family protein DNA-binding protein [Syntrophothermus
          lipocalidus DSM 12680]
 gi|297144155|gb|ADI00912.1| histone family protein DNA-binding protein [Syntrophothermus
          lipocalidus DSM 12680]
          Length = 90

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++ +  +++KD  + + TLF  I ++   G  +++  F TF V+++ +R G
Sbjct: 1  MNKTDLVAKVASKANMTKKDVEKVINTLFATIEEALKDGSKVQLVGFGTFEVRERQARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E++I   R+  FKA   LK  +
Sbjct: 61 RNPQTGEEIEIPAARIPAFKAGKALKDAV 89


>gi|127513142|ref|YP_001094339.1| integration host factor, alpha subunit [Shewanella loihica PV-4]
 gi|166918526|sp|A3QF32|IHFA_SHELP RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|126638437|gb|ABO24080.1| integration host factor, alpha subunit [Shewanella loihica PV-4]
          Length = 98

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 54/97 (55%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ + + +  G++++ +   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAEMAEHLFETLGINKRVAKEMVEAFFEEIRQALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T +++ I  RRVV F+    LK R+ +   G+
Sbjct: 62  GRNPKTGEDIPISARRVVTFRPGQKLKSRVEEANAGK 98


>gi|71278524|ref|YP_269693.1| integration host factor subunit alpha [Colwellia psychrerythraea
          34H]
 gi|123747380|sp|Q47ZS6|IHFA_COLP3 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|71144264|gb|AAZ24737.1| integration host factor, alpha subunit [Colwellia psychrerythraea
          34H]
          Length = 97

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 55/93 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F EI ++   G+ +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEVAEHLFEKVGLSKRDAKDMVEIFFEEIRETLESGDQVKLSGFGNFDLRLKSERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +++ I  R+VV F+    LK R+ D 
Sbjct: 62 GRNPKTGEDIPISARKVVTFRPGQKLKSRVEDG 94


>gi|28899685|ref|NP_799290.1| DNA-binding protein HU-2 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260364000|ref|ZP_05776734.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus K5030]
 gi|260878153|ref|ZP_05890508.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AN-5034]
 gi|260897884|ref|ZP_05906380.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus Peru-466]
 gi|28807937|dbj|BAC61174.1| DNA-binding protein HU-2 [Vibrio parahaemolyticus RIMD 2210633]
 gi|308085528|gb|EFO35223.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus Peru-466]
 gi|308090217|gb|EFO39912.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AN-5034]
 gi|308115538|gb|EFO53078.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus K5030]
          Length = 91

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 44/91 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +      +  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLEGVTGALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T  E++I    V  F A   LK+   D
Sbjct: 61 RNPKTGDEIQIAAANVPAFVAGKALKEACND 91


>gi|170727450|ref|YP_001761476.1| histone family protein DNA-binding protein [Shewanella woodyi
          ATCC 51908]
 gi|169812797|gb|ACA87381.1| histone family protein DNA-binding protein [Shewanella woodyi
          ATCC 51908]
          Length = 90

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + +    + D    G+ I +  F TF V+Q+  R G
Sbjct: 1  MNKSELIEKIASGADISKAAAGRALDSFIEAVTDGLKDGDKISLVGFGTFEVRQRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E+KI    +  FKA   LK  + 
Sbjct: 61 RNPQTGAEIKIAAANIPAFKAGKALKDAVN 90


>gi|91228710|ref|ZP_01262623.1| bacterial nucleoid DNA-binding protein [Vibrio alginolyticus
          12G01]
 gi|262392956|ref|YP_003284810.1| DNA-binding protein HU-alpha [Vibrio sp. Ex25]
 gi|269965869|ref|ZP_06179963.1| DNA-binding protein HU [Vibrio alginolyticus 40B]
 gi|91187736|gb|EAS74055.1| bacterial nucleoid DNA-binding protein [Vibrio alginolyticus
          12G01]
 gi|262336550|gb|ACY50345.1| DNA-binding protein HU-alpha [Vibrio sp. Ex25]
 gi|269829533|gb|EEZ83773.1| DNA-binding protein HU [Vibrio alginolyticus 40B]
          Length = 90

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +    + +  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLDGVTGALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  E++I    V  F A   LK+ + 
Sbjct: 61 RNPKTGDEIQIAAANVPAFVAGKALKESVN 90


>gi|330009679|ref|ZP_08306553.1| integration host factor, alpha subunit [Klebsiella sp. MS 92-3]
 gi|328534767|gb|EGF61323.1| integration host factor, alpha subunit [Klebsiella sp. MS 92-3]
          Length = 94

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 53/93 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +++ I  RRVV F+    LK R+ + 
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94


>gi|312969741|ref|ZP_07783924.1| integration host factor, alpha subunit [Escherichia coli 1827-70]
 gi|310338026|gb|EFQ03115.1| integration host factor, alpha subunit [Escherichia coli 1827-70]
          Length = 99

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 54/98 (55%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +++ I  RRVV F+    LK R+ +     +
Sbjct: 62  GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKNE 99


>gi|264679160|ref|YP_003279067.1| integration host factor, subunit alpha [Comamonas testosteroni
           CNB-2]
 gi|262209673|gb|ACY33771.1| integration host factor, alpha subunit [Comamonas testosteroni
           CNB-2]
          Length = 108

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 35/98 (35%), Positives = 54/98 (55%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S  +T++ L   +  E GL+++++   V   F+ I    V GE +K+S F  F ++ K  
Sbjct: 10  SPALTKAQLADLLFDEIGLNKREAKDMVDAFFDLISQKLVEGEDVKLSGFGNFQIRTKAP 69

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           R GRN +T + + I  RRVV F ASS LK+ I  +  G
Sbjct: 70  RPGRNPRTGELIPIAARRVVTFHASSKLKELIQGEGSG 107


>gi|254481702|ref|ZP_05094945.1| integration host factor, alpha subunit [marine gamma
          proteobacterium HTCC2148]
 gi|214037831|gb|EEB78495.1| integration host factor, alpha subunit [marine gamma
          proteobacterium HTCC2148]
          Length = 102

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 52/92 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S++ + + +E GL+++++   V   F EI       E +K+S F  F ++ K  R 
Sbjct: 3  ALTKSEMAERLFEELGLNKREAKEIVELFFEEIRACLENNEQVKLSGFGNFDLRDKSQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +E+ I  RRVV F+    LK R+ +
Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKARVEE 94


>gi|260583468|ref|ZP_05851216.1| DNA-binding protein HU [Granulicatella elegans ATCC 700633]
 gi|260158094|gb|EEW93162.1| DNA-binding protein HU [Granulicatella elegans ATCC 700633]
          Length = 92

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 54/90 (60%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV  ++K+  L++KD +  V  LF  I ++   GE +++  F  F V+++ +R GR
Sbjct: 3  NKAELVDRVAKKTQLTKKDVSAAVDALFETIQEALQAGEKVQVIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N Q+ +E++I+  +V  FKA   LK  + +
Sbjct: 63 NPQSGEEIQIEASKVPAFKAGKALKDAVKN 92


>gi|262376135|ref|ZP_06069365.1| integration host factor, beta subunit [Acinetobacter lwoffii
          SH145]
 gi|262308736|gb|EEY89869.1| integration host factor, beta subunit [Acinetobacter lwoffii
          SH145]
          Length = 90

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+++ GLS+ D+ + +      + ++   G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAEKGGLSKADAGKALDATIASVTEALKSGDTVTLVGFGTFGVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   ++I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGATLEIKASKVPSFKAGKGLKDAVA 90


>gi|153835692|ref|ZP_01988359.1| DNA-binding protein HU-beta [Vibrio harveyi HY01]
 gi|269961042|ref|ZP_06175411.1| DNA-binding protein HU-beta [Vibrio harveyi 1DA3]
 gi|148867673|gb|EDL66949.1| DNA-binding protein HU-beta [Vibrio harveyi HY01]
 gi|269834261|gb|EEZ88351.1| DNA-binding protein HU-beta [Vibrio harveyi 1DA3]
          Length = 90

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 46/88 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I++   +S+  + R +      +  +   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVEQIAENADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN +T +E++I   +V  FKA   LK  
Sbjct: 61 RNPKTGEEIQIAEAKVPSFKAGKALKDA 88


>gi|229008753|ref|ZP_04166148.1| DNA-binding protein HU [Bacillus mycoides Rock1-4]
 gi|228752514|gb|EEM02147.1| DNA-binding protein HU [Bacillus mycoides Rock1-4]
          Length = 90

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 55/90 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++ +  LS+KD+T  V  + ++I  +  + E++++  F TF V+++ +R G
Sbjct: 1  MNKTELINQVAVKSSLSKKDATASVQAILDQITKALQKEESVQLIGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  FKA   LK+ + 
Sbjct: 61 RNPQTGEEMHIPGGKVPGFKAGKSLKEAVK 90


>gi|91787981|ref|YP_548933.1| integration host factor subunit alpha [Polaromonas sp. JS666]
 gi|123059944|sp|Q12BQ7|IHFA_POLSJ RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|91697206|gb|ABE44035.1| integration host factor, alpha subunit [Polaromonas sp. JS666]
          Length = 111

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 55/98 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +  +T++ L + + ++ GL++++S   +   F+ I DS V G  +KIS F  F ++ K  
Sbjct: 10  TPALTKAHLAELLFEQIGLNKRESKDMIDAFFDLISDSLVDGNDVKISGFGNFQIRTKAP 69

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           R GRN +T + + I  RRVV F AS  LK +I  D   
Sbjct: 70  RPGRNPRTGEAIPIQARRVVTFHASHKLKDQIQGDSAA 107


>gi|89095458|ref|ZP_01168369.1| DNA-binding protein HU [Oceanospirillum sp. MED92]
 gi|89080288|gb|EAR59549.1| DNA-binding protein HU [Oceanospirillum sp. MED92]
          Length = 91

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +      +  +   G+++ +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAASADIPKAAAGRALDATLEAVTGALQNGDSVALVGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + ++I    +  FK    LK  +  
Sbjct: 61 RNPQTGKPIEIAAATLPTFKPGKALKDAVNK 91


>gi|296135851|ref|YP_003643093.1| integration host factor, alpha subunit [Thiomonas intermedia K12]
 gi|295795973|gb|ADG30763.1| integration host factor, alpha subunit [Thiomonas intermedia K12]
          Length = 115

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 57/94 (60%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + + +  GL++++S   V   F+ + D+  RGE +K+S F  F +++K  
Sbjct: 11  TPTLTKAELAEQLYERIGLNKRESKDMVDAFFDRVRDALGRGEDVKLSGFGHFQLREKAQ 70

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R GRN +T + + I  RRVV+F AS   K ++  
Sbjct: 71  RPGRNPRTGEIIPIAARRVVIFHASHKFKHQLQG 104


>gi|225627276|ref|ZP_03785313.1| integration host factor, alpha subunit [Brucella ceti str. Cudo]
 gi|237815217|ref|ZP_04594215.1| integration host factor, alpha subunit [Brucella abortus str. 2308
           A]
 gi|297248134|ref|ZP_06931852.1| integration host factor subunit alpha [Brucella abortus bv. 5 str.
           B3196]
 gi|306841978|ref|ZP_07474652.1| integration host factor, alpha subunit [Brucella sp. BO2]
 gi|225617281|gb|EEH14326.1| integration host factor, alpha subunit [Brucella ceti str. Cudo]
 gi|237790054|gb|EEP64264.1| integration host factor, alpha subunit [Brucella abortus str. 2308
           A]
 gi|297175303|gb|EFH34650.1| integration host factor subunit alpha [Brucella abortus bv. 5 str.
           B3196]
 gi|306287906|gb|EFM59323.1| integration host factor, alpha subunit [Brucella sp. BO2]
          Length = 128

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/102 (47%), Positives = 74/102 (72%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +++ ++ GLSR +S   V  + +E+CD+ V GE +K+SSFATF V+ K  
Sbjct: 24  GKTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNE 83

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           R+GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+  
Sbjct: 84  RIGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQGK 125


>gi|227358099|ref|ZP_03842441.1| DNA-binding protein HU-beta [Proteus mirabilis ATCC 29906]
 gi|227161834|gb|EEI46866.1| DNA-binding protein HU-beta [Proteus mirabilis ATCC 29906]
          Length = 96

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 50/93 (53%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K++ ++ L+  I+    +++  + R V  +   I +S  +G+ + +  F TF V+ + +R
Sbjct: 4  KSVNKTQLIDKIAANADITKAAAGRVVDAMVASITESLQKGDDVALVGFGTFTVRDRAAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           GRN QT +E++I   +V  F+A   LK  +  
Sbjct: 64 TGRNPQTGKEIQIAAAKVPAFRAGKGLKDAVNQ 96


>gi|330445805|ref|ZP_08309457.1| integration host factor, alpha subunit [Photobacterium leiognathi
          subsp. mandapamensis svers.1.1.]
 gi|328489996|dbj|GAA03954.1| integration host factor, alpha subunit [Photobacterium leiognathi
          subsp. mandapamensis svers.1.1.]
          Length = 98

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 53/91 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ +  GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAENLFENVGLSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +++ I  RRVV F+    LK R+ 
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVE 92


>gi|91792960|ref|YP_562611.1| integration host factor, alpha subunit [Shewanella denitrificans
           OS217]
 gi|123356864|sp|Q12NT8|IHFA_SHEDO RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|91714962|gb|ABE54888.1| integration host factor, alpha subunit [Shewanella denitrificans
           OS217]
          Length = 99

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 56/98 (57%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ + + +  GL+++ +   V + F EI ++   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAEMAEHLFETLGLNKRVAKEMVESFFEEIREALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +++ I  RRVV F+    LK R+     G+K
Sbjct: 62  GRNPKTGEDIPISARRVVTFRPGQKLKARVEAANSGKK 99


>gi|90962747|ref|YP_536662.1| DNA-binding protein HU [Lactobacillus salivarius UCC118]
 gi|90821941|gb|ABE00579.1| DNA-binding protein HU [Lactobacillus salivarius UCC118]
          Length = 91

 Score =  133 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 54/91 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV++I+++ G ++K++   V+     + ++ V G+ ++I  F  F V+++ +R G
Sbjct: 1  MNKNELVEAIAEKMGATKKEAEAAVSAFTETVKEALVDGKKVQIIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E++I   +V  FK    LK  +  
Sbjct: 61 RNPQTGKEIEIPASKVPAFKPGKGLKDAVNK 91


>gi|83647657|ref|YP_436092.1| integration host factor subunit beta [Hahella chejuensis KCTC
          2396]
 gi|123767360|sp|Q2SCF7|IHFB_HAHCH RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|83635700|gb|ABC31667.1| integration host factor, beta subunit [Hahella chejuensis KCTC
          2396]
          Length = 98

 Score =  133 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV+ I+++   LS KD    V T+   +  S  +G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELVEIIAQKQPQLSIKDVELAVKTIIEYMSQSLSQGQRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T + V +  + V  FK    L+  +   ++ 
Sbjct: 61 GRNPKTGETVHLPAKYVPHFKPGKELRDEVNASLKA 96


>gi|121594811|ref|YP_986707.1| integration host factor subunit beta [Acidovorax sp. JS42]
 gi|222110590|ref|YP_002552854.1| integration host factor subunit beta [Acidovorax ebreus TPSY]
 gi|120606891|gb|ABM42631.1| integration host factor, beta subunit [Acidovorax sp. JS42]
 gi|221730034|gb|ACM32854.1| integration host factor, beta subunit [Acidovorax ebreus TPSY]
          Length = 103

 Score =  133 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDLV+ ++  FG L+++D+   V T+ + + D+ VRG  I+I  F +F V ++  R+
Sbjct: 1  MTRSDLVEELAARFGQLTQRDAEYAVKTILDAVSDALVRGHRIEIRGFGSFSVNRRPPRM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V I  +RV  FK    L++ +
Sbjct: 61 GRNPRSGEAVHIPEKRVPHFKPGKALRETV 90


>gi|90413395|ref|ZP_01221388.1| putative DNA-binding protein HU-alpha [Photobacterium profundum
          3TCK]
 gi|90325637|gb|EAS42106.1| putative DNA-binding protein HU-alpha [Photobacterium profundum
          3TCK]
          Length = 90

 Score =  133 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +    I  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDLIAEKADLSKAQAKLALESTLEGITGALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT QE++I    V  F +   LK  + 
Sbjct: 61 RNPQTGQEIQIAAANVPAFVSGKALKDALK 90


>gi|297205895|ref|ZP_06923290.1| DNA-binding protein HU [Lactobacillus jensenii JV-V16]
 gi|297149021|gb|EFH29319.1| DNA-binding protein HU [Lactobacillus jensenii JV-V16]
          Length = 91

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 48/89 (53%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV  ++ +  L++KD    V  +F  I D   +GE +++  F TF V+ + +R GR
Sbjct: 3  NKAELVAEVAAKTKLTKKDVAAAVDAIFASIQDDLAKGEKVQLIGFGTFEVRNRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E++I   +V  FK    LK  + 
Sbjct: 63 NPQTGVEIEIPASKVPAFKPGKALKDAVK 91


>gi|120554972|ref|YP_959323.1| integration host factor subunit alpha [Marinobacter aquaeolei
          VT8]
 gi|166918510|sp|A1U2B7|IHFA_MARAV RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|120324821|gb|ABM19136.1| integration host factor, alpha subunit [Marinobacter aquaeolei
          VT8]
          Length = 100

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 54/91 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + + +E GL+++++   V   F+EI  +    E +K+S F  F ++ K  R 
Sbjct: 3  ALTKADMAERLYEELGLNKREAKEMVEAFFDEIRGALSHNEQVKLSGFGNFDLRDKKQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  RRVV F+    LK+++ 
Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKQKVE 93


>gi|152831|gb|AAA26558.1| integration host factor alpha-subunit [Serratia marcescens]
          Length = 98

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 54/93 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +++ I  RRVV F+    LK R+ + 
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94


>gi|262276275|ref|ZP_06054084.1| DNA-binding protein HU-beta [Grimontia hollisae CIP 101886]
 gi|262220083|gb|EEY71399.1| DNA-binding protein HU-beta [Grimontia hollisae CIP 101886]
          Length = 93

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 49/92 (53%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K + +S L+  I++   LS+  + R +  L   + DS   GE + +  F TF V+++ +R
Sbjct: 2  KKVNKSQLIDKIAENADLSKAAAGRALDALIEAVSDSLKEGEQVALVGFGTFSVRERSAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT  E+KI   +V  FKA   LK  + 
Sbjct: 62 TGRNPQTGAEIKIAAAKVPGFKAGKALKDAVN 93


>gi|294340016|emb|CAZ88380.1| integration host factor (IHF), alpha subunit [Thiomonas sp. 3As]
          Length = 115

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 57/94 (60%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + + +  GL++++S   V   F+ + D+  RGE +K+S F  F +++K  
Sbjct: 11  TPTLTKAELAEQLYERIGLNKRESKDMVDAFFDRVRDALGRGEDVKLSGFGHFQLREKAQ 70

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R GRN +T + + I  RRVV+F AS   K ++  
Sbjct: 71  RPGRNPRTGEIIPIAARRVVIFHASHKFKHQLQG 104


>gi|116513919|ref|YP_812825.1| nucleoid DNA-binding protein [Lactobacillus delbrueckii subsp.
          bulgaricus ATCC BAA-365]
 gi|116093234|gb|ABJ58387.1| bacterial nucleoid protein Hbs [Lactobacillus delbrueckii subsp.
          bulgaricus ATCC BAA-365]
          Length = 91

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV  ++ +  L++KD +  V  +F  I +   +GE +++  F TF V+ + +R GR
Sbjct: 3  NKAELVSEVAAKTKLTKKDVSEAVDAVFEAIQEDLAKGEKVQLIGFGTFEVRDRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E++I   +   FK    LK  + 
Sbjct: 63 NPQTGAEIEIPASKGPAFKPGKALKDAVK 91


>gi|228925137|ref|ZP_04088247.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228834476|gb|EEM80005.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 93

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 54/92 (58%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +++L K I+++  L++KD+      + + I ++   GE ++I  F TF V+++ +R
Sbjct: 2  QKMNKTELTKVIAEKAELTQKDAAAATQAVLDTITNALANGEKVQILGFGTFEVRERSAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E++I   +   FKA   LK+ + 
Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93


>gi|110834074|ref|YP_692933.1| DNA-binding protein HU [Alcanivorax borkumensis SK2]
 gi|110647185|emb|CAL16661.1| DNA-binding protein HU [Alcanivorax borkumensis SK2]
          Length = 90

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    +S+ D+ R + +    +  +   G+++ +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAASADISKADAGRALDSTLEAVTGALKNGDSVSLVGFGTFAVKRREARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT Q +KI    V  FKA   LK  + 
Sbjct: 61 RNPQTGQTIKIAAANVPGFKAGKALKDAVN 90


>gi|28897694|ref|NP_797299.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus RIMD
          2210633]
 gi|91228614|ref|ZP_01262532.1| DNA-binding protein HU-beta [Vibrio alginolyticus 12G01]
 gi|260366278|ref|ZP_05778734.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus K5030]
 gi|260898293|ref|ZP_05906789.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus Peru-466]
 gi|260901514|ref|ZP_05909909.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ4037]
 gi|262394812|ref|YP_003286666.1| DNA-binding protein HU-beta [Vibrio sp. Ex25]
 gi|269965577|ref|ZP_06179691.1| DNA-binding protein HU-beta [Vibrio alginolyticus 40B]
 gi|28805907|dbj|BAC59183.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus RIMD
          2210633]
 gi|91187846|gb|EAS74160.1| DNA-binding protein HU-beta [Vibrio alginolyticus 12G01]
 gi|262338406|gb|ACY52201.1| DNA-binding protein HU-beta [Vibrio sp. Ex25]
 gi|269829802|gb|EEZ84037.1| DNA-binding protein HU-beta [Vibrio alginolyticus 40B]
 gi|308088436|gb|EFO38131.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus Peru-466]
 gi|308110870|gb|EFO48410.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ4037]
 gi|308114045|gb|EFO51585.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus K5030]
 gi|328473323|gb|EGF44171.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus 10329]
          Length = 90

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 46/88 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I++   +S+  + R +      +  +   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVEQIAENADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN +T +E++I   +V  FKA   LK  
Sbjct: 61 RNPKTGEEIQIAEAKVPAFKAGKALKDA 88


>gi|121997236|ref|YP_001002023.1| integration host factor subunit alpha [Halorhodospira halophila
           SL1]
 gi|166918508|sp|A1WU59|IHFA_HALHL RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|121588641|gb|ABM61221.1| integration host factor, alpha subunit [Halorhodospira halophila
           SL1]
          Length = 101

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 57/98 (58%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           ++T++D+ + + +E GL+++++   V   F EI  +   GE +K+SSF  F ++ K  R 
Sbjct: 2   SLTKADMAERLFEEVGLNKREAKELVELFFEEIRTALENGEPVKLSSFGNFELRDKNERP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +E+ I  RRVV F+    LK R+      R+
Sbjct: 62  GRNPKTGEEIPISARRVVTFRPGQKLKSRVESYAGTRE 99


>gi|218710870|ref|YP_002418491.1| DNA-binding protein HU-alpha [Vibrio splendidus LGP32]
 gi|218323889|emb|CAV20250.1| DNA-binding protein HU-alpha [Vibrio splendidus LGP32]
          Length = 110

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 44/90 (48%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ L+  I+++  LS+  +   +      + D+   G+ +++  F TF V  + +R G
Sbjct: 21  MNKTQLIDFIAEKADLSKAQAKAALEATLGGVTDALKDGDQVQLIGFGTFKVNHRAARTG 80

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN +T  E++I    V  F A   LK  + 
Sbjct: 81  RNPKTGDEIQIAAANVPAFVAGKALKDSVK 110


>gi|228911916|ref|ZP_04075657.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 200]
 gi|228924999|ref|ZP_04088129.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228834662|gb|EEM80171.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228847725|gb|EEM92638.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 200]
          Length = 93

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 54/92 (58%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +++L K ++++  L++KD+      L + I ++   G+ ++I  F TF V+++ +R
Sbjct: 2  QKMNKTELTKVVAEKAELTQKDAAAATQALLDTITNALANGDKVQILGFGTFEVRERSAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E++I   +   FKA   LK+ + 
Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93


>gi|228994795|ref|ZP_04154593.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442]
 gi|228998490|ref|ZP_04158078.1| DNA-binding protein HU [Bacillus mycoides Rock3-17]
 gi|229005965|ref|ZP_04163656.1| DNA-binding protein HU [Bacillus mycoides Rock1-4]
 gi|228755282|gb|EEM04636.1| DNA-binding protein HU [Bacillus mycoides Rock1-4]
 gi|228761215|gb|EEM10173.1| DNA-binding protein HU [Bacillus mycoides Rock3-17]
 gi|228764903|gb|EEM13659.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442]
          Length = 90

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 57/90 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K++++   +S+K++T  V ++   I ++   GE +++  F TF V+++ +R G
Sbjct: 1  MNKTELIKNVAQTAEISQKEATVVVQSVVESITNTLAAGEKVQLIGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FKA   LK+ + 
Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKEAVK 90


>gi|192361790|ref|YP_001982469.1| DNA-binding protein HU superfamily [Cellvibrio japonicus Ueda107]
 gi|190687955|gb|ACE85633.1| DNA-binding protein HU superfamily [Cellvibrio japonicus Ueda107]
          Length = 90

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+++I+    + +  + R +  +   I  +   G+++ +  F TF VK++ +R G
Sbjct: 1  MNKTELIEAIAASADIPKAAAGRALDAVVESITGALKNGDSVVLVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI   +V  FKA   LK  + 
Sbjct: 61 RNPQTGEEIKIAAAKVPGFKAGKALKDAVN 90


>gi|119945204|ref|YP_942884.1| DNA-binding protein HU beta subunit [Psychromonas ingrahamii 37]
 gi|119863808|gb|ABM03285.1| DNA-binding protein HU beta subunit [Psychromonas ingrahamii 37]
          Length = 91

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  L+ +I++   +S+  + R +      +  + V G+ + +  F  F VK++ +R G
Sbjct: 1  MNKGQLIDNIAESADISKAAAGRALDAFIESVTGALVEGDNVSLIGFGAFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QTN+ ++I   +V  FKA   LK  I 
Sbjct: 61 RNPQTNEPIQIAAAKVPAFKAGKSLKDAIN 90


>gi|312884772|ref|ZP_07744473.1| DNA-binding protein HU-alpha [Vibrio caribbenthicus ATCC
          BAA-2122]
 gi|309367685|gb|EFP95236.1| DNA-binding protein HU-alpha [Vibrio caribbenthicus ATCC
          BAA-2122]
          Length = 90

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +    + +  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLDGVTGALKDGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  E++I    V  F A   LK+ + 
Sbjct: 61 RNPKTGAEIQIAAANVPAFVAGKALKESVN 90


>gi|291617253|ref|YP_003519995.1| IhfA [Pantoea ananatis LMG 20103]
 gi|291152283|gb|ADD76867.1| IhfA [Pantoea ananatis LMG 20103]
 gi|327393707|dbj|BAK11129.1| integration host factor alpha- subunit IhfA [Pantoea ananatis
          AJ13355]
          Length = 100

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 54/95 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +++ I  RRVV F+    LK R+ +   
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENATP 96


>gi|326202457|ref|ZP_08192326.1| histone family protein DNA-binding protein [Clostridium
          papyrosolvens DSM 2782]
 gi|325987575|gb|EGD48402.1| histone family protein DNA-binding protein [Clostridium
          papyrosolvens DSM 2782]
          Length = 91

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 55/91 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV  ++++ GLS+KDS + +  +   + ++   G+ +++  F +F VKQ+ +R G
Sbjct: 1  MNKSELVDKMAEKSGLSKKDSDKALNAMLESVEEALTSGDKVQLIGFGSFEVKQRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E+ I   +  VFKA   LK+ I  
Sbjct: 61 RNPQTMEEINIPESKAPVFKAGKDLKEMINK 91


>gi|183597477|ref|ZP_02958970.1| hypothetical protein PROSTU_00752 [Providencia stuartii ATCC
          25827]
 gi|188023227|gb|EDU61267.1| hypothetical protein PROSTU_00752 [Providencia stuartii ATCC
          25827]
          Length = 90

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++   L++  +   + +  N I ++  +GE +++  F TF V  +  R G
Sbjct: 1  MNKTELVDAIAESADLTKVQAKAALESTLNAISETLKKGEQVQLVGFGTFKVSHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I    V  F A   LK+ + 
Sbjct: 61 RNPQTREEITIPATNVPAFSAGKALKEAVK 90


>gi|400046|sp|P23302|IHFA_SERMA RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
          Length = 99

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 55/98 (56%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +++ I  RRVV F+    LK R+ +     +
Sbjct: 62  GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKGE 99


>gi|326943503|gb|AEA19396.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 90

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K I+++  L++KD+      + + I ++   GE ++I  F TF V+++ +R G
Sbjct: 1  MNKTELTKVIAEKAELTQKDAAAATQAVLDTITNALANGEKVQILGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +   FKA   LK+ + 
Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELKEAVK 90


>gi|37524501|ref|NP_927845.1| Na-binding protein HU-alpha (NS2) (HU-2) [Photorhabdus
          luminescens subsp. laumondii TTO1]
 gi|36783925|emb|CAE12787.1| NA-binding protein HU-alpha (NS2) (HU-2) [Photorhabdus
          luminescens subsp. laumondii TTO1]
          Length = 90

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++   L++  +   + +  N I +S   G+++++  F TF V  +  R G
Sbjct: 1  MNKTELVDAIAESTELTKAQAKAALESTLNAITESLKAGDSVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I    V  F A   LK  + 
Sbjct: 61 RNPQTGKEITIAAANVPAFSAGKALKDAVK 90


>gi|331007938|ref|ZP_08331000.1| Integration host factor alpha subunit [gamma proteobacterium
           IMCC1989]
 gi|330418251|gb|EGG92855.1| Integration host factor alpha subunit [gamma proteobacterium
           IMCC1989]
          Length = 106

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 53/98 (54%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T+++L + + +E G +++++   V   F EI ++    E +K+S F  F ++ K  R 
Sbjct: 9   ALTKAELAEKLYEELGFNKREAKELVELFFEEIRNALESNEQVKLSGFGNFDLRDKKQRP 68

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +E+ I  RRVV F+    LK R+       K
Sbjct: 69  GRNPKTGEEIPISARRVVTFRPGQKLKARVEAHAGTNK 106


>gi|304405810|ref|ZP_07387468.1| histone family protein DNA-binding protein [Paenibacillus
          curdlanolyticus YK9]
 gi|304345053|gb|EFM10889.1| histone family protein DNA-binding protein [Paenibacillus
          curdlanolyticus YK9]
          Length = 90

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+ + GL+++D    +     E+ D+   G+ +++  F TF  +++  R G
Sbjct: 1  MNKTDLINNIATKSGLTKRDVEAVLNGFLGEVTDALASGDKVQLIGFGTFETRKRSGRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   ++I   +V  FKA + LK  I 
Sbjct: 61 RNPQTGNPIEIAESKVPAFKAGNKLKDAIK 90


>gi|237731275|ref|ZP_04561756.1| integration host factor subunit alpha [Citrobacter sp. 30_2]
 gi|283833385|ref|ZP_06353126.1| integration host factor, alpha subunit [Citrobacter youngae ATCC
           29220]
 gi|226906814|gb|EEH92732.1| integration host factor subunit alpha [Citrobacter sp. 30_2]
 gi|291071034|gb|EFE09143.1| integration host factor, alpha subunit [Citrobacter youngae ATCC
           29220]
          Length = 99

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 54/98 (55%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +++ I  RRVV F+    LK R+ +     +
Sbjct: 62  GRNPKTGEDIPITARRVVTFRPGQKLKSRVENATPKEE 99


>gi|326796011|ref|YP_004313831.1| Integration host factor subunit beta [Marinomonas mediterranea
           MMB-1]
 gi|326546775|gb|ADZ91995.1| Integration host factor subunit beta [Marinomonas mediterranea
           MMB-1]
          Length = 101

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 2/101 (1%)

Query: 5   ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L++  I ++  L  KD    +  + + + +S   GE I+I  F +F +  +  RV
Sbjct: 1   MTKSELIEMLIDQQSHLPVKDVELAIKAVLDHMSESLANGERIEIRGFGSFSLHYRAPRV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIM-DDMRGRKCN 103
           GRN +T + V++  + V  FK    L++ +  DD    + N
Sbjct: 61  GRNPKTGESVELTAKYVPHFKPGKELRELVNLDDTAHHELN 101


>gi|254509429|ref|ZP_05121509.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          16]
 gi|219547647|gb|EED24692.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          16]
          Length = 98

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 54/92 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ ++ G S++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAENLFEKHGFSKRDAKETVEAFFEEVRKALEGGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVEN 93


>gi|16760555|ref|NP_456172.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16764690|ref|NP_460305.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29141684|ref|NP_805026.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56413674|ref|YP_150749.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62179928|ref|YP_216345.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|157145985|ref|YP_001453304.1| integration host factor subunit alpha [Citrobacter koseri ATCC
           BAA-895]
 gi|161614253|ref|YP_001588218.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167551702|ref|ZP_02345456.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994355|ref|ZP_02575447.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168233523|ref|ZP_02658581.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168239546|ref|ZP_02664604.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168240842|ref|ZP_02665774.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168263840|ref|ZP_02685813.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168463260|ref|ZP_02697191.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168822198|ref|ZP_02834198.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194443596|ref|YP_002040596.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194447585|ref|YP_002045346.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194469176|ref|ZP_03075160.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736601|ref|YP_002114356.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197249705|ref|YP_002146698.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197265740|ref|ZP_03165814.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197362598|ref|YP_002142235.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198244241|ref|YP_002215787.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200390104|ref|ZP_03216715.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204927937|ref|ZP_03219138.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205352938|ref|YP_002226739.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857154|ref|YP_002243805.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213022625|ref|ZP_03337072.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213160963|ref|ZP_03346673.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213421813|ref|ZP_03354879.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213426326|ref|ZP_03359076.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213586389|ref|ZP_03368215.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213618534|ref|ZP_03372360.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213857558|ref|ZP_03384529.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224584149|ref|YP_002637947.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238910845|ref|ZP_04654682.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289806332|ref|ZP_06536961.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
 gi|60392433|sp|P0A1S0|IHFA_SALTY RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|60392434|sp|P0A1S1|IHFA_SALTI RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|75505782|sp|Q57PU7|IHFA_SALCH RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|81677883|sp|Q5PH86|IHFA_SALPA RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|166918501|sp|A8AHA5|IHFA_CITK8 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|189044706|sp|A9N236|IHFA_SALPB RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|226709745|sp|B5F7F6|IHFA_SALA4 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|226709746|sp|B5FJA2|IHFA_SALDC RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|226709747|sp|B5QVW2|IHFA_SALEP RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|226709748|sp|B5RAW7|IHFA_SALG2 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|226709749|sp|B4TGH7|IHFA_SALHS RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|226709750|sp|B4T4N4|IHFA_SALNS RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|226709751|sp|B5BA36|IHFA_SALPK RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|226709752|sp|B4TUF6|IHFA_SALSV RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|254803520|sp|C0Q640|IHFA_SALPC RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|25294356|pir||AD0705 integration host factor alpha-chain [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16419858|gb|AAL20264.1| integration host factor (IHF), alpha subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|16502851|emb|CAD02013.1| integration host factor alpha-subunit [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137312|gb|AAO68875.1| integration host factor alpha-subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56127931|gb|AAV77437.1| integration host factor alpha-subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62127561|gb|AAX65264.1| integration host factor (IHF), alpha subunit [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|157083190|gb|ABV12868.1| hypothetical protein CKO_01739 [Citrobacter koseri ATCC BAA-895]
 gi|161363617|gb|ABX67385.1| hypothetical protein SPAB_01998 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402259|gb|ACF62481.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194405889|gb|ACF66108.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194455540|gb|EDX44379.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194712103|gb|ACF91324.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195634129|gb|EDX52481.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197094075|emb|CAR59575.1| integration host factor alpha-subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197213408|gb|ACH50805.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197243995|gb|EDY26615.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197287774|gb|EDY27164.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197938757|gb|ACH76090.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602549|gb|EDZ01095.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204323279|gb|EDZ08475.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205272719|emb|CAR37635.1| Integration host factor alpha-subunit [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205323612|gb|EDZ11451.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327760|gb|EDZ14524.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205332324|gb|EDZ19088.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205339460|gb|EDZ26224.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205341281|gb|EDZ28045.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205347544|gb|EDZ34175.1| integration host factor, alpha subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206708957|emb|CAR33287.1| Integration host factor alpha-subunit [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224468676|gb|ACN46506.1| integration host factor alpha subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261246548|emb|CBG24358.1| integration host factor alpha-subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993220|gb|ACY88105.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157876|emb|CBW17370.1| integration host factor alpha-subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912324|dbj|BAJ36298.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320086181|emb|CBY95955.1| Integration host factor subunit alpha IHF-alpha [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321223967|gb|EFX49030.1| Integration host factor alpha subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322616724|gb|EFY13633.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620017|gb|EFY16890.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622327|gb|EFY19172.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627851|gb|EFY24641.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633051|gb|EFY29794.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636703|gb|EFY33406.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641271|gb|EFY37912.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645260|gb|EFY41789.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650201|gb|EFY46615.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655775|gb|EFY52077.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660101|gb|EFY56340.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665332|gb|EFY61520.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669590|gb|EFY65738.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673516|gb|EFY69618.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677442|gb|EFY73506.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679893|gb|EFY75932.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687365|gb|EFY83337.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322714394|gb|EFZ05965.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323129610|gb|ADX17040.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323192483|gb|EFZ77713.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198662|gb|EFZ83763.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204090|gb|EFZ89104.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208709|gb|EFZ93647.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210222|gb|EFZ95121.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217685|gb|EGA02400.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220078|gb|EGA04545.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323223495|gb|EGA07821.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229487|gb|EGA13610.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232710|gb|EGA16806.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240251|gb|EGA24295.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242761|gb|EGA26782.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249077|gb|EGA32996.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252784|gb|EGA36621.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255606|gb|EGA39362.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260117|gb|EGA43742.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267119|gb|EGA50604.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271557|gb|EGA54978.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326623534|gb|EGE29879.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326628011|gb|EGE34354.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332988227|gb|AEF07210.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 99

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 54/98 (55%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +++ I  RRVV F+    LK R+ +     +
Sbjct: 62  GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKEE 99


>gi|15802124|ref|NP_288146.1| integration host factor subunit alpha [Escherichia coli O157:H7
          EDL933]
 gi|15831673|ref|NP_310446.1| integration host factor subunit alpha [Escherichia coli O157:H7
          str. Sakai]
 gi|16129668|ref|NP_416227.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli str. K-12 substr. MG1655]
 gi|24112892|ref|NP_707402.1| integration host factor subunit alpha [Shigella flexneri 2a str.
          301]
 gi|26247964|ref|NP_754004.1| integration host factor subunit alpha [Escherichia coli CFT073]
 gi|30063021|ref|NP_837192.1| integration host factor subunit alpha [Shigella flexneri 2a str.
          2457T]
 gi|74311968|ref|YP_310387.1| integration host factor subunit alpha [Shigella sonnei Ss046]
 gi|82543885|ref|YP_407832.1| integration host factor subunit alpha [Shigella boydii Sb227]
 gi|82777060|ref|YP_403409.1| integration host factor subunit alpha [Shigella dysenteriae
          Sd197]
 gi|89108552|ref|AP_002332.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli str. K-12 substr. W3110]
 gi|91210926|ref|YP_540912.1| integration host factor subunit alpha [Escherichia coli UTI89]
 gi|110641834|ref|YP_669564.1| integration host factor subunit alpha [Escherichia coli 536]
 gi|110805478|ref|YP_688998.1| integration host factor subunit alpha [Shigella flexneri 5 str.
          8401]
 gi|157159273|ref|YP_001463009.1| integration host factor subunit alpha [Escherichia coli E24377A]
 gi|168749471|ref|ZP_02774493.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4113]
 gi|168756713|ref|ZP_02781720.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4401]
 gi|168762224|ref|ZP_02787231.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4501]
 gi|168770473|ref|ZP_02795480.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4486]
 gi|168774987|ref|ZP_02799994.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4196]
 gi|168782127|ref|ZP_02807134.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4076]
 gi|168788108|ref|ZP_02813115.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC869]
 gi|168800107|ref|ZP_02825114.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC508]
 gi|170019938|ref|YP_001724892.1| integration host factor subunit alpha [Escherichia coli ATCC
          8739]
 gi|170081371|ref|YP_001730691.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli str. K-12 substr. DH10B]
 gi|170681870|ref|YP_001743536.1| integration host factor subunit alpha [Escherichia coli SMS-3-5]
 gi|170768840|ref|ZP_02903293.1| integration host factor, alpha subunit [Escherichia albertii
          TW07627]
 gi|187732420|ref|YP_001880502.1| integration host factor subunit alpha [Shigella boydii CDC
          3083-94]
 gi|188496090|ref|ZP_03003360.1| integration host factor, alpha subunit [Escherichia coli 53638]
 gi|191167868|ref|ZP_03029673.1| integration host factor, alpha subunit [Escherichia coli B7A]
 gi|191171631|ref|ZP_03033178.1| integration host factor, alpha subunit [Escherichia coli F11]
 gi|193065297|ref|ZP_03046369.1| integration host factor, alpha subunit [Escherichia coli E22]
 gi|193068941|ref|ZP_03049900.1| integration host factor, alpha subunit [Escherichia coli E110019]
 gi|194428516|ref|ZP_03061055.1| integration host factor, alpha subunit [Escherichia coli B171]
 gi|194435140|ref|ZP_03067374.1| integration host factor, alpha subunit [Shigella dysenteriae
          1012]
 gi|194438513|ref|ZP_03070602.1| integration host factor, alpha subunit [Escherichia coli 101-1]
 gi|195937396|ref|ZP_03082778.1| integration host factor subunit alpha [Escherichia coli O157:H7
          str. EC4024]
 gi|208810559|ref|ZP_03252435.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4206]
 gi|208816579|ref|ZP_03257699.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4045]
 gi|208820964|ref|ZP_03261284.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4042]
 gi|209399095|ref|YP_002270782.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4115]
 gi|209919072|ref|YP_002293156.1| integration host factor subunit alpha [Escherichia coli SE11]
 gi|215486931|ref|YP_002329362.1| integration host factor subunit alpha [Escherichia coli O127:H6
          str. E2348/69]
 gi|217328779|ref|ZP_03444860.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. TW14588]
 gi|218548716|ref|YP_002382507.1| integration host factor subunit alpha [Escherichia fergusonii
          ATCC 35469]
 gi|218554280|ref|YP_002387193.1| integration host factor subunit alpha [Escherichia coli IAI1]
 gi|218558582|ref|YP_002391495.1| integration host factor subunit alpha [Escherichia coli S88]
 gi|218689657|ref|YP_002397869.1| integration host factor subunit alpha [Escherichia coli ED1a]
 gi|218695274|ref|YP_002402941.1| integration host factor subunit alpha [Escherichia coli 55989]
 gi|218699720|ref|YP_002407349.1| integration host factor subunit alpha [Escherichia coli IAI39]
 gi|218705212|ref|YP_002412731.1| integration host factor subunit alpha [Escherichia coli UMN026]
 gi|227885866|ref|ZP_04003671.1| integration host factor subunit alpha [Escherichia coli 83972]
 gi|237705660|ref|ZP_04536141.1| integration host factor subunit alpha [Escherichia sp. 3_2_53FAA]
 gi|238900927|ref|YP_002926723.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli BW2952]
 gi|253773333|ref|YP_003036164.1| integration host factor subunit alpha [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|254161772|ref|YP_003044880.1| integration host factor subunit alpha [Escherichia coli B str.
          REL606]
 gi|254793329|ref|YP_003078166.1| integration host factor subunit alpha [Escherichia coli O157:H7
          str. TW14359]
 gi|256018094|ref|ZP_05431959.1| integration host factor subunit alpha [Shigella sp. D9]
 gi|256022624|ref|ZP_05436489.1| integration host factor subunit alpha [Escherichia sp. 4_1_40B]
 gi|260844064|ref|YP_003221842.1| integration host factor, alpha subunit [Escherichia coli O103:H2
          str. 12009]
 gi|260855578|ref|YP_003229469.1| integration host factor, alpha subunit [Escherichia coli O26:H11
          str. 11368]
 gi|260868239|ref|YP_003234641.1| integration host factor, alpha subunit [Escherichia coli O111:H-
          str. 11128]
 gi|261227795|ref|ZP_05942076.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258040|ref|ZP_05950573.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. FRIK966]
 gi|283785064|ref|YP_003364929.1| Integration host factor alpha subunit [Citrobacter rodentium
          ICC168]
 gi|291282892|ref|YP_003499710.1| Integration host factor subunit alpha [Escherichia coli O55:H7
          str. CB9615]
 gi|293405211|ref|ZP_06649203.1| integration host factor subunit alpha [Escherichia coli FVEC1412]
 gi|293410028|ref|ZP_06653604.1| integration host factor [Escherichia coli B354]
 gi|293415031|ref|ZP_06657674.1| integration host factor [Escherichia coli B185]
 gi|293446087|ref|ZP_06662509.1| integration host factor [Escherichia coli B088]
 gi|297516677|ref|ZP_06935063.1| integration host factor subunit alpha [Escherichia coli OP50]
 gi|298380854|ref|ZP_06990453.1| integration host factor subunit alpha [Escherichia coli FVEC1302]
 gi|300818351|ref|ZP_07098561.1| integration host factor, alpha subunit [Escherichia coli MS
          107-1]
 gi|300821414|ref|ZP_07101561.1| integration host factor, alpha subunit [Escherichia coli MS
          119-7]
 gi|300898500|ref|ZP_07116837.1| integration host factor, alpha subunit [Escherichia coli MS
          198-1]
 gi|300904568|ref|ZP_07122405.1| integration host factor, alpha subunit [Escherichia coli MS 84-1]
 gi|300917726|ref|ZP_07134375.1| integration host factor, alpha subunit [Escherichia coli MS
          115-1]
 gi|300924754|ref|ZP_07140696.1| integration host factor, alpha subunit [Escherichia coli MS
          182-1]
 gi|300930812|ref|ZP_07146184.1| integration host factor, alpha subunit [Escherichia coli MS
          187-1]
 gi|300938954|ref|ZP_07153655.1| integration host factor, alpha subunit [Escherichia coli MS 21-1]
 gi|300951312|ref|ZP_07165156.1| integration host factor, alpha subunit [Escherichia coli MS
          116-1]
 gi|300958601|ref|ZP_07170726.1| integration host factor, alpha subunit [Escherichia coli MS
          175-1]
 gi|300987621|ref|ZP_07178293.1| integration host factor, alpha subunit [Escherichia coli MS
          200-1]
 gi|300994425|ref|ZP_07180930.1| integration host factor, alpha subunit [Escherichia coli MS 45-1]
 gi|301025263|ref|ZP_07188828.1| integration host factor, alpha subunit [Escherichia coli MS
          196-1]
 gi|301026993|ref|ZP_07190380.1| integration host factor, alpha subunit [Escherichia coli MS 69-1]
 gi|301050951|ref|ZP_07197800.1| integration host factor, alpha subunit [Escherichia coli MS
          185-1]
 gi|301306645|ref|ZP_07212704.1| integration host factor, alpha subunit [Escherichia coli MS
          124-1]
 gi|301327442|ref|ZP_07220677.1| integration host factor, alpha subunit [Escherichia coli MS 78-1]
 gi|301647903|ref|ZP_07247680.1| integration host factor, alpha subunit [Escherichia coli MS
          146-1]
 gi|306815034|ref|ZP_07449190.1| integration host factor subunit alpha [Escherichia coli NC101]
 gi|307138372|ref|ZP_07497728.1| integration host factor subunit alpha [Escherichia coli H736]
 gi|307310717|ref|ZP_07590363.1| integration host factor, alpha subunit [Escherichia coli W]
 gi|309788459|ref|ZP_07683063.1| integration host factor, alpha subunit [Shigella dysenteriae
          1617]
 gi|309793482|ref|ZP_07687909.1| integration host factor, alpha subunit [Escherichia coli MS
          145-7]
 gi|312966915|ref|ZP_07781133.1| integration host factor, alpha subunit [Escherichia coli 2362-75]
 gi|331642310|ref|ZP_08343445.1| integration host factor, alpha subunit [Escherichia coli H736]
 gi|331647204|ref|ZP_08348298.1| integration host factor, alpha subunit [Escherichia coli M605]
 gi|331653113|ref|ZP_08354118.1| integration host factor, alpha subunit [Escherichia coli M718]
 gi|331657693|ref|ZP_08358655.1| integration host factor, alpha subunit [Escherichia coli TA206]
 gi|331663192|ref|ZP_08364102.1| integration host factor, alpha subunit [Escherichia coli TA143]
 gi|331668398|ref|ZP_08369246.1| integration host factor, alpha subunit [Escherichia coli TA271]
 gi|331673265|ref|ZP_08374033.1| integration host factor, alpha subunit [Escherichia coli TA280]
 gi|331677586|ref|ZP_08378261.1| integration host factor, alpha subunit [Escherichia coli H591]
 gi|331683219|ref|ZP_08383820.1| integration host factor, alpha subunit [Escherichia coli H299]
 gi|332279137|ref|ZP_08391550.1| integration host factor subunit alpha [Shigella sp. D9]
 gi|67466106|sp|P0A6X7|IHFA_ECOLI RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|67466109|sp|P0A6X8|IHFA_ECOL6 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|67466110|sp|P0A6X9|IHFA_ECO57 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|67466111|sp|P0A6Y0|IHFA_SHIFL RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|122958311|sp|Q0THB6|IHFA_ECOL5 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123084460|sp|Q1RB83|IHFA_ECOUT RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123342866|sp|Q0T4S2|IHFA_SHIF8 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123742132|sp|Q32FI7|IHFA_SHIDS RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123769448|sp|Q321K4|IHFA_SHIBS RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123773516|sp|Q3Z260|IHFA_SHISS RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|166918502|sp|A7ZMI0|IHFA_ECO24 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|189044701|sp|B1IPL5|IHFA_ECOLC RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226707374|sp|B7MAS3|IHFA_ECO45 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226707854|sp|B5YQ00|IHFA_ECO5E RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709722|sp|B7NT64|IHFA_ECO7I RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709723|sp|B7M1C1|IHFA_ECO8A RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709724|sp|B1XG19|IHFA_ECODH RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709725|sp|B7N550|IHFA_ECOLU RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709726|sp|B6I8Q5|IHFA_ECOSE RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709727|sp|B1LE18|IHFA_ECOSM RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709729|sp|B7LQ77|IHFA_ESCF3 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709755|sp|B2U390|IHFA_SHIB3 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|254803514|sp|B7US95|IHFA_ECO27 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|254803515|sp|B7L6I5|IHFA_ECO55 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|254803516|sp|B7MVJ1|IHFA_ECO81 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|259491530|sp|C4ZYH4|IHFA_ECOBW RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|1942275|pdb|1IHF|A Chain A, Integration Host FactorDNA COMPLEX
 gi|34811459|pdb|1OUZ|A Chain A, Crystal Structure Of A Mutant Ihf (Betae44a) Complexed
          With A Variant H' Site (T44a)
 gi|34811464|pdb|1OWF|A Chain A, Crystal Structure Of A Mutant Ihf (Betae44a) Complexed
          With The Native H' Site
 gi|34811469|pdb|1OWG|A Chain A, Crystal Structure Of Wt Ihf Complexed With An Altered H'
          Site (T44a)
 gi|119389941|pdb|2HT0|A Chain A, Ihf Bound To Doubly Nicked Dna
 gi|12515723|gb|AAG56699.1|AE005394_8 integration host factor (IHF), alpha subunit; site specific
          recombination [Escherichia coli O157:H7 str. EDL933]
 gi|26108367|gb|AAN80569.1|AE016761_144 Integration host factor alpha-subunit [Escherichia coli CFT073]
 gi|43072|emb|CAA23566.1| unnamed protein product [Escherichia coli]
 gi|146347|gb|AAA51471.1| integration host factor alpha subunit [Escherichia coli]
 gi|1742792|dbj|BAA15480.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli str. K12 substr. W3110]
 gi|1788005|gb|AAC74782.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli str. K-12 substr. MG1655]
 gi|13361886|dbj|BAB35842.1| integration host factor IHF alpha subunit [Escherichia coli
          O157:H7 str. Sakai]
 gi|24051836|gb|AAN43109.1| integration host factor (IHF), alpha subunit [Shigella flexneri
          2a str. 301]
 gi|30041270|gb|AAP16999.1| integration host factor (IHF), alpha subunit [Shigella flexneri
          2a str. 2457T]
 gi|68304092|gb|AAY89704.1| IhfA [Escherichia coli LW1655F+]
 gi|73855445|gb|AAZ88152.1| integration host factor (IHF), alpha subunit [Shigella sonnei
          Ss046]
 gi|81241208|gb|ABB61918.1| integration host factor, alpha subunit [Shigella dysenteriae
          Sd197]
 gi|81245296|gb|ABB66004.1| integration host factor, alpha subunit [Shigella boydii Sb227]
 gi|91072500|gb|ABE07381.1| integration host factor (IHF), alpha subunit [Escherichia coli
          UTI89]
 gi|110343426|gb|ABG69663.1| integration host factor alpha-subunit [Escherichia coli 536]
 gi|110615026|gb|ABF03693.1| integration host factor alpha subunit [Shigella flexneri 5 str.
          8401]
 gi|157081303|gb|ABV21011.1| integration host factor, alpha subunit [Escherichia coli E24377A]
 gi|169754866|gb|ACA77565.1| integration host factor, alpha subunit [Escherichia coli ATCC
          8739]
 gi|169889206|gb|ACB02913.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli str. K-12 substr. DH10B]
 gi|170122388|gb|EDS91319.1| integration host factor, alpha subunit [Escherichia albertii
          TW07627]
 gi|170519588|gb|ACB17766.1| integration host factor, alpha subunit [Escherichia coli SMS-3-5]
 gi|187429412|gb|ACD08686.1| integration host factor, alpha subunit [Shigella boydii CDC
          3083-94]
 gi|187769469|gb|EDU33313.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4196]
 gi|188016292|gb|EDU54414.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4113]
 gi|188491289|gb|EDU66392.1| integration host factor, alpha subunit [Escherichia coli 53638]
 gi|189000264|gb|EDU69250.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4076]
 gi|189356221|gb|EDU74640.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4401]
 gi|189360623|gb|EDU79042.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4486]
 gi|189367513|gb|EDU85929.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4501]
 gi|189371962|gb|EDU90378.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC869]
 gi|189377579|gb|EDU95995.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC508]
 gi|190902127|gb|EDV61871.1| integration host factor, alpha subunit [Escherichia coli B7A]
 gi|190907961|gb|EDV67553.1| integration host factor, alpha subunit [Escherichia coli F11]
 gi|192927091|gb|EDV81713.1| integration host factor, alpha subunit [Escherichia coli E22]
 gi|192957736|gb|EDV88180.1| integration host factor, alpha subunit [Escherichia coli E110019]
 gi|194413394|gb|EDX29677.1| integration host factor, alpha subunit [Escherichia coli B171]
 gi|194416604|gb|EDX32739.1| integration host factor, alpha subunit [Shigella dysenteriae
          1012]
 gi|194422523|gb|EDX38521.1| integration host factor, alpha subunit [Escherichia coli 101-1]
 gi|195182902|dbj|BAG66472.1| alpha subunit of integration host factor [Escherichia coli
          O111:H-]
 gi|208725075|gb|EDZ74782.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4206]
 gi|208730922|gb|EDZ79611.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4045]
 gi|208741087|gb|EDZ88769.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4042]
 gi|209160495|gb|ACI37928.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. EC4115]
 gi|209768898|gb|ACI82761.1| integration host factor IHF alpha subunit [Escherichia coli]
 gi|209768900|gb|ACI82762.1| integration host factor IHF alpha subunit [Escherichia coli]
 gi|209768902|gb|ACI82763.1| integration host factor IHF alpha subunit [Escherichia coli]
 gi|209768904|gb|ACI82764.1| integration host factor IHF alpha subunit [Escherichia coli]
 gi|209768906|gb|ACI82765.1| integration host factor IHF alpha subunit [Escherichia coli]
 gi|209912331|dbj|BAG77405.1| integration host factor alpha subunit [Escherichia coli SE11]
 gi|215265003|emb|CAS09389.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli O127:H6 str. E2348/69]
 gi|217318126|gb|EEC26553.1| integration host factor, alpha subunit [Escherichia coli O157:H7
          str. TW14588]
 gi|218352006|emb|CAU97738.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli 55989]
 gi|218356257|emb|CAQ88874.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia fergusonii ATCC 35469]
 gi|218361048|emb|CAQ98625.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli IAI1]
 gi|218365351|emb|CAR03072.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli S88]
 gi|218369706|emb|CAR17475.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli IAI39]
 gi|218427221|emb|CAR08107.2| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli ED1a]
 gi|218432309|emb|CAR13199.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli UMN026]
 gi|222033468|emb|CAP76209.1| Integration host factor subunit alpha [Escherichia coli LF82]
 gi|226900417|gb|EEH86676.1| integration host factor subunit alpha [Escherichia sp. 3_2_53FAA]
 gi|227837439|gb|EEJ47905.1| integration host factor subunit alpha [Escherichia coli 83972]
 gi|238861521|gb|ACR63519.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli BW2952]
 gi|242377435|emb|CAQ32187.1| integration host factor (IHF), alpha subunit, subunit of IHF
          transcriptional dual regulator [Escherichia coli
          BL21(DE3)]
 gi|253324377|gb|ACT28979.1| integration host factor, alpha subunit [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253973673|gb|ACT39344.1| integration host factor subunit alpha [Escherichia coli B str.
          REL606]
 gi|253977867|gb|ACT43537.1| integration host factor subunit alpha [Escherichia coli
          BL21(DE3)]
 gi|254592729|gb|ACT72090.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli O157:H7 str. TW14359]
 gi|257754227|dbj|BAI25729.1| integration host factor, alpha subunit [Escherichia coli O26:H11
          str. 11368]
 gi|257759211|dbj|BAI30708.1| integration host factor, alpha subunit [Escherichia coli O103:H2
          str. 12009]
 gi|257764595|dbj|BAI36090.1| integration host factor, alpha subunit [Escherichia coli O111:H-
          str. 11128]
 gi|260449165|gb|ACX39587.1| integration host factor, alpha subunit [Escherichia coli DH1]
 gi|281178783|dbj|BAI55113.1| integration host factor alpha subunit [Escherichia coli SE15]
 gi|281600923|gb|ADA73907.1| Integration host factor subunit alpha [Shigella flexneri 2002017]
 gi|282948518|emb|CBG88107.1| Integration host factor alpha subunit [Citrobacter rodentium
          ICC168]
 gi|284921633|emb|CBG34705.1| Integration host factor alpha subunit [Escherichia coli 042]
 gi|290762765|gb|ADD56726.1| Integration host factor subunit alpha [Escherichia coli O55:H7
          str. CB9615]
 gi|291322917|gb|EFE62345.1| integration host factor [Escherichia coli B088]
 gi|291427419|gb|EFF00446.1| integration host factor subunit alpha [Escherichia coli FVEC1412]
 gi|291432679|gb|EFF05658.1| integration host factor [Escherichia coli B185]
 gi|291470496|gb|EFF12980.1| integration host factor [Escherichia coli B354]
 gi|294490672|gb|ADE89428.1| integration host factor, alpha subunit [Escherichia coli IHE3034]
 gi|298278296|gb|EFI19810.1| integration host factor subunit alpha [Escherichia coli FVEC1302]
 gi|299880128|gb|EFI88339.1| integration host factor, alpha subunit [Escherichia coli MS
          196-1]
 gi|300297405|gb|EFJ53790.1| integration host factor, alpha subunit [Escherichia coli MS
          185-1]
 gi|300306101|gb|EFJ60621.1| integration host factor, alpha subunit [Escherichia coli MS
          200-1]
 gi|300314726|gb|EFJ64510.1| integration host factor, alpha subunit [Escherichia coli MS
          175-1]
 gi|300357852|gb|EFJ73722.1| integration host factor, alpha subunit [Escherichia coli MS
          198-1]
 gi|300395233|gb|EFJ78771.1| integration host factor, alpha subunit [Escherichia coli MS 69-1]
 gi|300403481|gb|EFJ87019.1| integration host factor, alpha subunit [Escherichia coli MS 84-1]
 gi|300406271|gb|EFJ89809.1| integration host factor, alpha subunit [Escherichia coli MS 45-1]
 gi|300415127|gb|EFJ98437.1| integration host factor, alpha subunit [Escherichia coli MS
          115-1]
 gi|300419042|gb|EFK02353.1| integration host factor, alpha subunit [Escherichia coli MS
          182-1]
 gi|300449409|gb|EFK13029.1| integration host factor, alpha subunit [Escherichia coli MS
          116-1]
 gi|300456153|gb|EFK19646.1| integration host factor, alpha subunit [Escherichia coli MS 21-1]
 gi|300461370|gb|EFK24863.1| integration host factor, alpha subunit [Escherichia coli MS
          187-1]
 gi|300525917|gb|EFK46986.1| integration host factor, alpha subunit [Escherichia coli MS
          119-7]
 gi|300528991|gb|EFK50053.1| integration host factor, alpha subunit [Escherichia coli MS
          107-1]
 gi|300838107|gb|EFK65867.1| integration host factor, alpha subunit [Escherichia coli MS
          124-1]
 gi|300845954|gb|EFK73714.1| integration host factor, alpha subunit [Escherichia coli MS 78-1]
 gi|301073960|gb|EFK88766.1| integration host factor, alpha subunit [Escherichia coli MS
          146-1]
 gi|305851682|gb|EFM52135.1| integration host factor subunit alpha [Escherichia coli NC101]
 gi|306908895|gb|EFN39391.1| integration host factor, alpha subunit [Escherichia coli W]
 gi|307553734|gb|ADN46509.1| integration host factor [Escherichia coli ABU 83972]
 gi|307626801|gb|ADN71105.1| integration host factor subunit alpha [Escherichia coli UM146]
 gi|308123069|gb|EFO60331.1| integration host factor, alpha subunit [Escherichia coli MS
          145-7]
 gi|308923841|gb|EFP69344.1| integration host factor, alpha subunit [Shigella dysenteriae
          1617]
 gi|309701936|emb|CBJ01249.1| Integration host factor alpha subunit [Escherichia coli ETEC
          H10407]
 gi|312288379|gb|EFR16281.1| integration host factor, alpha subunit [Escherichia coli 2362-75]
 gi|312946313|gb|ADR27140.1| integration host factor subunit alpha [Escherichia coli O83:H1
          str. NRG 857C]
 gi|313649266|gb|EFS13700.1| integration host factor, alpha subunit [Shigella flexneri 2a str.
          2457T]
 gi|315061017|gb|ADT75344.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Escherichia coli W]
 gi|315136353|dbj|BAJ43512.1| integration host factor subunit alpha [Escherichia coli DH1]
 gi|315257483|gb|EFU37451.1| integration host factor, alpha subunit [Escherichia coli MS 85-1]
 gi|315286439|gb|EFU45874.1| integration host factor, alpha subunit [Escherichia coli MS
          110-3]
 gi|315290473|gb|EFU49847.1| integration host factor, alpha subunit [Escherichia coli MS
          153-1]
 gi|315299755|gb|EFU58995.1| integration host factor, alpha subunit [Escherichia coli MS 16-3]
 gi|315618909|gb|EFU99492.1| integration host factor, alpha subunit [Escherichia coli 3431]
 gi|320173204|gb|EFW48415.1| Integration host factor alpha subunit [Shigella dysenteriae CDC
          74-1112]
 gi|320181259|gb|EFW56178.1| Integration host factor alpha subunit [Shigella boydii ATCC 9905]
 gi|320185864|gb|EFW60615.1| Integration host factor alpha subunit [Shigella flexneri CDC
          796-83]
 gi|320188400|gb|EFW63062.1| Integration host factor alpha subunit [Escherichia coli O157:H7
          str. EC1212]
 gi|320194576|gb|EFW69207.1| Integration host factor alpha subunit [Escherichia coli
          WV_060327]
 gi|320197896|gb|EFW72504.1| Integration host factor alpha subunit [Escherichia coli EC4100B]
 gi|320641561|gb|EFX10949.1| integration host factor subunit alpha [Escherichia coli O157:H7
          str. G5101]
 gi|320646920|gb|EFX15753.1| integration host factor subunit alpha [Escherichia coli O157:H-
          str. 493-89]
 gi|320652202|gb|EFX20500.1| integration host factor subunit alpha [Escherichia coli O157:H-
          str. H 2687]
 gi|320657803|gb|EFX25565.1| integration host factor subunit alpha [Escherichia coli O55:H7
          str. 3256-97 TW 07815]
 gi|320658378|gb|EFX26072.1| integration host factor subunit alpha [Escherichia coli O55:H7
          str. USDA 5905]
 gi|320668275|gb|EFX35102.1| integration host factor subunit alpha [Escherichia coli O157:H7
          str. LSU-61]
 gi|323153050|gb|EFZ39319.1| integration host factor, alpha subunit [Escherichia coli EPECa14]
 gi|323158490|gb|EFZ44506.1| integration host factor, alpha subunit [Escherichia coli E128010]
 gi|323169347|gb|EFZ55023.1| integration host factor, alpha subunit [Shigella sonnei 53G]
 gi|323175219|gb|EFZ60833.1| integration host factor, alpha subunit [Escherichia coli LT-68]
 gi|323180491|gb|EFZ66036.1| integration host factor, alpha subunit [Escherichia coli 1180]
 gi|323186271|gb|EFZ71623.1| integration host factor, alpha subunit [Escherichia coli 1357]
 gi|323186894|gb|EFZ72212.1| integration host factor, alpha subunit [Escherichia coli RN587/1]
 gi|323378411|gb|ADX50679.1| integration host factor, alpha subunit [Escherichia coli KO11]
 gi|323937315|gb|EGB33594.1| integration host protein [Escherichia coli E1520]
 gi|323940621|gb|EGB36812.1| integration host protein [Escherichia coli E482]
 gi|323948097|gb|EGB44088.1| integration host protein [Escherichia coli H120]
 gi|323952220|gb|EGB48093.1| integration host protein [Escherichia coli H252]
 gi|323956614|gb|EGB52352.1| integration host protein [Escherichia coli H263]
 gi|323962096|gb|EGB57692.1| integration host protein [Escherichia coli H489]
 gi|323968482|gb|EGB63888.1| integration host protein [Escherichia coli M863]
 gi|323973907|gb|EGB69079.1| integration host protein [Escherichia coli TA007]
 gi|323978104|gb|EGB73190.1| integration host protein [Escherichia coli TW10509]
 gi|324007099|gb|EGB76318.1| integration host factor, alpha subunit [Escherichia coli MS 57-2]
 gi|324011508|gb|EGB80727.1| integration host factor, alpha subunit [Escherichia coli MS 60-1]
 gi|324016465|gb|EGB85684.1| integration host factor, alpha subunit [Escherichia coli MS
          117-3]
 gi|324113464|gb|EGC07439.1| integration host protein [Escherichia fergusonii B253]
 gi|324119198|gb|EGC13086.1| integration host protein [Escherichia coli E1167]
 gi|325497126|gb|EGC94985.1| integration host factor subunit alpha [Escherichia fergusonii
          ECD227]
 gi|326342080|gb|EGD65861.1| Integration host factor alpha subunit [Escherichia coli O157:H7
          str. 1044]
 gi|326343632|gb|EGD67394.1| Integration host factor alpha subunit [Escherichia coli O157:H7
          str. 1125]
 gi|327252829|gb|EGE64483.1| integration host factor, alpha subunit [Escherichia coli STEC_7v]
 gi|330911517|gb|EGH40027.1| integration host factor alpha subunit [Escherichia coli AA86]
 gi|331039108|gb|EGI11328.1| integration host factor, alpha subunit [Escherichia coli H736]
 gi|331043987|gb|EGI16123.1| integration host factor, alpha subunit [Escherichia coli M605]
 gi|331049211|gb|EGI21283.1| integration host factor, alpha subunit [Escherichia coli M718]
 gi|331055941|gb|EGI27950.1| integration host factor, alpha subunit [Escherichia coli TA206]
 gi|331058991|gb|EGI30968.1| integration host factor, alpha subunit [Escherichia coli TA143]
 gi|331063592|gb|EGI35503.1| integration host factor, alpha subunit [Escherichia coli TA271]
 gi|331069463|gb|EGI40850.1| integration host factor, alpha subunit [Escherichia coli TA280]
 gi|331074046|gb|EGI45366.1| integration host factor, alpha subunit [Escherichia coli H591]
 gi|331079434|gb|EGI50631.1| integration host factor, alpha subunit [Escherichia coli H299]
 gi|332090637|gb|EGI95732.1| integration host factor, alpha subunit [Shigella boydii 5216-82]
 gi|332093969|gb|EGI99022.1| integration host factor, alpha subunit [Shigella dysenteriae
          155-74]
 gi|332096357|gb|EGJ01358.1| integration host factor, alpha subunit [Shigella boydii 3594-74]
 gi|332101489|gb|EGJ04835.1| integration host factor subunit alpha [Shigella sp. D9]
 gi|332343431|gb|AEE56765.1| integration host factor, alpha subunit IhfA [Escherichia coli
          UMNK88]
 gi|332758619|gb|EGJ88938.1| integration host factor, alpha subunit [Shigella flexneri
          2747-71]
 gi|332762548|gb|EGJ92813.1| integration host factor, alpha subunit [Shigella flexneri
          4343-70]
 gi|332767225|gb|EGJ97420.1| integration host factor, alpha subunit [Shigella flexneri
          2930-71]
 gi|333003776|gb|EGK23312.1| integration host factor, alpha subunit [Shigella flexneri VA-6]
 gi|333004230|gb|EGK23761.1| integration host factor, alpha subunit [Shigella flexneri K-218]
 gi|333006576|gb|EGK26076.1| integration host factor, alpha subunit [Shigella flexneri K-272]
 gi|333018156|gb|EGK37458.1| integration host factor, alpha subunit [Shigella flexneri K-304]
 gi|333018795|gb|EGK38088.1| integration host factor, alpha subunit [Shigella flexneri K-227]
          Length = 99

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 53/93 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +++ I  RRVV F+    LK R+ + 
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94


>gi|156564019|ref|YP_001429759.1| DNA-binding HU protein [Bacillus phage 0305phi8-36]
 gi|154622716|gb|ABS83596.1| DNA-binding HU protein [Bacillus phage 0305phi8-36]
          Length = 111

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 52/90 (57%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L+  +++   +S+KD+T+ V  +F  I ++   G  +++  F TF  + + +R G
Sbjct: 22  MNKTELINHVAETAEISKKDATKAVDAVFGGITNALAEGNKVQLIGFGTFETRDRAARKG 81

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN QT +E++I   +V  FKA   LK  + 
Sbjct: 82  RNPQTGEEIEIAATKVPAFKAGKELKTAVK 111


>gi|218289480|ref|ZP_03493708.1| histone family protein DNA-binding protein [Alicyclobacillus
          acidocaldarius LAA1]
 gi|218240348|gb|EED07530.1| histone family protein DNA-binding protein [Alicyclobacillus
          acidocaldarius LAA1]
          Length = 91

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL++  +++ GLS+KD    +  LF+ I  +   GE ++I  F TF ++++ +R  
Sbjct: 1  MNKRDLIRKTAEQTGLSQKDCEAVINALFDTIRKTVESGEKVQIIGFGTFELRERAARTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + V++  RRV  FK  + LK+ + 
Sbjct: 61 RNPRTGEAVEVPARRVPAFKPGAELKQAVQ 90


>gi|254785577|ref|YP_003073006.1| integration host factor subunit alpha [Teredinibacter turnerae
           T7901]
 gi|237683400|gb|ACR10664.1| integration host factor, alpha subunit [Teredinibacter turnerae
           T7901]
          Length = 107

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 55/92 (59%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +++T++DL +++ +E G +++++   V   F EI ++    E +K+S F  F ++ K  R
Sbjct: 10  ESLTKADLAENLYEELGFNKREAKELVEYFFEEIRNALENNEQVKLSGFGNFDLRDKKQR 69

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            GRN +T +E+ I  RRVV F+    LK R+ 
Sbjct: 70  PGRNPKTGEEIPITARRVVTFRPGQKLKARVE 101


>gi|149374483|ref|ZP_01892257.1| integration host factor, alpha subunit [Marinobacter algicola
          DG893]
 gi|149361186|gb|EDM49636.1| integration host factor, alpha subunit [Marinobacter algicola
          DG893]
 gi|311693968|gb|ADP96841.1| integration host factor, alpha subunit [marine bacterium HP15]
          Length = 100

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 54/91 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +E GL+++++   V   F+EI  +    E +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEMAERLYEELGLNKREAKEMVEAFFDEIRGALSHNEQVKLSGFGNFDLRDKKQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  RRVV F+    LK+++ 
Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKQKVE 93


>gi|227821546|ref|YP_002825516.1| integration host factor subunit alpha [Sinorhizobium fredii NGR234]
 gi|254803519|sp|C3M9J7|IHFA_RHISN RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|227340545|gb|ACP24763.1| integration host factor, alpha subunit [Sinorhizobium fredii
           NGR234]
          Length = 112

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 51/110 (46%), Positives = 78/110 (70%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +S+ ++ GLSR +S   V T+ +EIC++ VRGE++K+SSFATF V+ K  
Sbjct: 3   GKTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGESVKLSSFATFQVRDKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111
           R+GRN +T +EV I PRRV+ FKAS++LK+R++     R+  +    + S
Sbjct: 63  RIGRNPKTGEEVPISPRRVMTFKASNVLKQRVLKAHLSRRAKQKQTGTAS 112


>gi|264677561|ref|YP_003277467.1| integration host factor subunit beta [Comamonas testosteroni CNB-2]
 gi|299532471|ref|ZP_07045862.1| integration host factor, beta subunit [Comamonas testosteroni S44]
 gi|262208073|gb|ACY32171.1| integration host factor, beta subunit [Comamonas testosteroni
           CNB-2]
 gi|298719556|gb|EFI60522.1| integration host factor, beta subunit [Comamonas testosteroni S44]
          Length = 106

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 62/104 (59%), Gaps = 2/104 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +TRSDLV+ ++ +FG L+++D+ + V T+ + + D+ VRG  I+I  F +F +  +  R+
Sbjct: 1   MTRSDLVEELAAQFGQLNQRDAEQAVKTILDAVSDALVRGHRIEIRGFGSFAINHRQPRI 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           GRN ++ + V++  +RV  FK    L++ + D+++         
Sbjct: 61  GRNPRSGESVQVPSKRVPHFKPGKALREAV-DNLKAEDSAAQQP 103


>gi|156934283|ref|YP_001438199.1| integration host factor subunit alpha [Cronobacter sakazakii ATCC
          BAA-894]
 gi|166918505|sp|A7MNY7|IHFA_ENTS8 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|156532537|gb|ABU77363.1| hypothetical protein ESA_02114 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 99

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 53/93 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +++ I  RRVV F+    LK R+ + 
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94


>gi|313884094|ref|ZP_07817860.1| DNA-binding protein HU [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620541|gb|EFR31964.1| DNA-binding protein HU [Eremococcus coleocola ACS-139-V-Col8]
          Length = 91

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 53/89 (59%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV+ ++ +  L++KD T  V  LF  I ++   GE +++  F TF V+++ +R GR
Sbjct: 3  NKAELVEQVAAKTNLTKKDVTATVEALFETIQETLANGEKVQVIGFGTFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E++I   +V  FKA   LK  + 
Sbjct: 63 NPQTGEEIEIAATKVPGFKAGKALKDAVK 91


>gi|260597643|ref|YP_003210214.1| integration host factor subunit alpha [Cronobacter turicensis
          z3032]
 gi|260216820|emb|CBA30309.1| Integration host factor subunit alpha [Cronobacter turicensis
          z3032]
          Length = 99

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 53/93 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +++ I  RRVV F+    LK R+ + 
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94


>gi|308049413|ref|YP_003912979.1| integration host factor, alpha subunit [Ferrimonas balearica DSM
          9799]
 gi|307631603|gb|ADN75905.1| integration host factor, alpha subunit [Ferrimonas balearica DSM
          9799]
          Length = 101

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + + +  GL ++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADMAEHLIETLGLHKRDAKDVVEAFFEEIRLALETGEQVKLSGFGNFELRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +++ I  RRVV F+    LK RI + 
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKTRIEES 94


>gi|120553956|ref|YP_958307.1| integration host factor subunit beta [Marinobacter aquaeolei VT8]
 gi|166918554|sp|A1TZF1|IHFB_MARAV RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|120323805|gb|ABM18120.1| integration host factor, beta subunit [Marinobacter aquaeolei
          VT8]
          Length = 98

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV+ I+ K+  LS KD    V ++   +  S   G+ I+I  F +F +  + +R 
Sbjct: 1  MTKSELVELIASKQTQLSVKDVELAVKSIIEHMSQSLADGQRIEIRGFGSFSLHHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T   V++  + V  FK    L++++ D M+
Sbjct: 61 GRNPKTGDAVQLPAKFVPHFKPGKELREQVNDSMK 95


>gi|331092508|ref|ZP_08341330.1| DNA-binding protein HU [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330400729|gb|EGG80332.1| DNA-binding protein HU [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 91

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   LS+KD+ + +      + +   +GE I++  F TF V ++ +R G
Sbjct: 1  MNKTELITAVAENAELSKKDAEKALKAFVEVVTEELKKGEKIQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + + I   +V  FK    LK  + 
Sbjct: 61 RNPQTGKTMSIAACKVPKFKVGKALKDAVN 90


>gi|228949928|ref|ZP_04112122.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|229060100|ref|ZP_04197470.1| DNA-binding protein HU [Bacillus cereus AH603]
 gi|229082875|ref|ZP_04215299.1| DNA-binding protein HU [Bacillus cereus Rock4-2]
 gi|228700413|gb|EEL52975.1| DNA-binding protein HU [Bacillus cereus Rock4-2]
 gi|228719140|gb|EEL70750.1| DNA-binding protein HU [Bacillus cereus AH603]
 gi|228809749|gb|EEM56176.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
          Length = 93

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 54/92 (58%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +++L K ++++  L++KD+      L + I ++   GE ++I  F TF V+++ +R
Sbjct: 2  QKMNKTELTKVVAEKAELTQKDAAAATQALLDTITNALANGEKVQILGFGTFEVRERSAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E++I   +   FKA   LK+ + 
Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93


>gi|152970723|ref|YP_001335832.1| integration host factor subunit alpha [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206579803|ref|YP_002237980.1| integration host factor, alpha subunit [Klebsiella pneumoniae 342]
 gi|238895229|ref|YP_002919964.1| integration host factor subunit alpha [Klebsiella pneumoniae
           NTUH-K2044]
 gi|288934890|ref|YP_003438949.1| integration host factor, subunit alpha [Klebsiella variicola At-22]
 gi|290509032|ref|ZP_06548403.1| integration host factor, alpha subunit [Klebsiella sp. 1_1_55]
 gi|166918509|sp|A6TAI1|IHFA_KLEP7 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|226709730|sp|B5XQD2|IHFA_KLEP3 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|150955572|gb|ABR77602.1| integration host factor alpha subunit [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206568861|gb|ACI10637.1| integration host factor, alpha subunit [Klebsiella pneumoniae 342]
 gi|238547546|dbj|BAH63897.1| integration host factor alpha subunit [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|288889599|gb|ADC57917.1| integration host factor, alpha subunit [Klebsiella variicola At-22]
 gi|289778426|gb|EFD86423.1| integration host factor, alpha subunit [Klebsiella sp. 1_1_55]
          Length = 99

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 54/98 (55%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +++ I  RRVV F+    LK R+ +     K
Sbjct: 62  GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDK 99


>gi|146341332|ref|YP_001206380.1| integration host factor subunit alpha [Bradyrhizobium sp. ORS278]
 gi|166918500|sp|A4YW83|IHFA_BRASO RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|146194138|emb|CAL78159.1| integration host factor alpha-subunit (IHF-alpha) [Bradyrhizobium
           sp. ORS278]
          Length = 119

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 51/108 (47%), Positives = 71/108 (65%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR DL +++ ++ GLSR +S+ FV  +  EI D   RGE +K+SSF +F V++KG 
Sbjct: 5   GKTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVRKKGQ 64

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
           R+GRN +T  EV I PRRV+VFK S+ILK+RI       K N +   S
Sbjct: 65  RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINGQQANGKMNGESAPS 112


>gi|110633500|ref|YP_673708.1| integration host factor subunit alpha [Mesorhizobium sp. BNC1]
 gi|123058057|sp|Q11J82|IHFA_MESSB RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|110284484|gb|ABG62543.1| integration host factor, alpha subunit [Chelativorans sp. BNC1]
          Length = 111

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 53/108 (49%), Positives = 78/108 (72%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +++ ++ GLSR +S + V  +  E+CD+ VRGE +K+SSFATF V++K  
Sbjct: 3   GKTVTRADLAEAVYRKVGLSRTESAQIVEMVLQEVCDAIVRGETVKLSSFATFQVREKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
           RVGRN +T +EV I PRRV+ FKAS++LK RI+   + RK +K+   S
Sbjct: 63  RVGRNPKTGEEVPISPRRVMTFKASNVLKSRILRAHQTRKPSKEATAS 110


>gi|157370390|ref|YP_001478379.1| integration host factor subunit alpha [Serratia proteamaculans
          568]
 gi|270261563|ref|ZP_06189836.1| integration host factor, alpha subunit [Serratia odorifera 4Rx13]
 gi|293396364|ref|ZP_06640642.1| integration host factor subunit alpha [Serratia odorifera DSM
          4582]
 gi|166918522|sp|A8GDR1|IHFA_SERP5 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|157322154|gb|ABV41251.1| integration host factor, alpha subunit [Serratia proteamaculans
          568]
 gi|270045047|gb|EFA18138.1| integration host factor, alpha subunit [Serratia odorifera 4Rx13]
 gi|291421153|gb|EFE94404.1| integration host factor subunit alpha [Serratia odorifera DSM
          4582]
          Length = 98

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 54/93 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +++ I  RRVV F+    LK R+ + 
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94


>gi|221197740|ref|ZP_03570786.1| integration host factor, alpha subunit [Burkholderia multivorans
           CGD2M]
 gi|221204702|ref|ZP_03577719.1| integration host factor, alpha subunit [Burkholderia multivorans
           CGD2]
 gi|221214897|ref|ZP_03587865.1| integration host factor, alpha subunit [Burkholderia multivorans
           CGD1]
 gi|221165124|gb|EED97602.1| integration host factor, alpha subunit [Burkholderia multivorans
           CGD1]
 gi|221175559|gb|EEE07989.1| integration host factor, alpha subunit [Burkholderia multivorans
           CGD2]
 gi|221181672|gb|EEE14073.1| integration host factor, alpha subunit [Burkholderia multivorans
           CGD2M]
          Length = 114

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + +    GL+++++   V   F  I D+   GE++K+S F  F ++ K  
Sbjct: 13  TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 72

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS  LK  + + 
Sbjct: 73  RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 107


>gi|156973715|ref|YP_001444622.1| nucleoid DNA-binding protein [Vibrio harveyi ATCC BAA-1116]
 gi|156525309|gb|ABU70395.1| hypothetical protein VIBHAR_01420 [Vibrio harveyi ATCC BAA-1116]
          Length = 90

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 46/88 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I++   +S+  + R +    + +  +   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVEQIAENADISKASAGRALDAFIDAVSGTLQSGDQVALVGFGTFSVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN +T  E++I   +V  FKA   LK  
Sbjct: 61 RNPKTGDEIQIAEAKVPSFKAGKALKDA 88


>gi|220930448|ref|YP_002507357.1| histone family protein DNA-binding protein [Clostridium
          cellulolyticum H10]
 gi|220000776|gb|ACL77377.1| histone family protein DNA-binding protein [Clostridium
          cellulolyticum H10]
          Length = 91

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 55/91 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  ++++ GL++KDS + +  +   + ++   G+ +++  F +F VKQ+ +R G
Sbjct: 1  MNKSELIDKMAEKSGLTKKDSDKALNAMLESVEEALTGGDKVQLIGFGSFEVKQRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E+ I   +  VFKA   LK+ I  
Sbjct: 61 RNPQTMEEINIPESKAPVFKAGKDLKEMINK 91


>gi|99080754|ref|YP_612908.1| integration host factor subunit alpha [Ruegeria sp. TM1040]
 gi|123379018|sp|Q1GI70|IHFA_SILST RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|99037034|gb|ABF63646.1| integration host factor alpha subunit [Ruegeria sp. TM1040]
          Length = 100

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 46/96 (47%), Positives = 67/96 (69%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KTITR DL +++ +E GLSR +S + V ++   + D+ VRGE +KISSF TF V+ K +R
Sbjct: 4  KTITRMDLSEAVFREVGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDKSAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          VGRN +T +EV I PRRV+ F+ S ++K R+ D  +
Sbjct: 64 VGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVADGNK 99


>gi|317047874|ref|YP_004115522.1| integration host factor subunit alpha [Pantoea sp. At-9b]
 gi|316949491|gb|ADU68966.1| integration host factor, alpha subunit [Pantoea sp. At-9b]
          Length = 100

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 54/95 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +++ I  RRVV F+    LK R+ +   
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENATP 96


>gi|146311386|ref|YP_001176460.1| integration host factor subunit alpha [Enterobacter sp. 638]
 gi|261339521|ref|ZP_05967379.1| integration host factor, alpha subunit [Enterobacter cancerogenus
           ATCC 35316]
 gi|166918504|sp|A4W9M9|IHFA_ENT38 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|145318262|gb|ABP60409.1| integration host factor, alpha subunit [Enterobacter sp. 638]
 gi|288318334|gb|EFC57272.1| integration host factor, alpha subunit [Enterobacter cancerogenus
           ATCC 35316]
 gi|295096105|emb|CBK85195.1| integration host factor, alpha subunit [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 99

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 54/98 (55%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +++ I  RRVV F+    LK R+ +     +
Sbjct: 62  GRNPKTGEDIPITARRVVTFRPGQKLKSRVENATPKAE 99


>gi|238753681|ref|ZP_04615043.1| Integration host factor subunit alpha [Yersinia ruckeri ATCC
          29473]
 gi|238708233|gb|EEQ00589.1| Integration host factor subunit alpha [Yersinia ruckeri ATCC
          29473]
          Length = 98

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 54/95 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +++ I  RRVV F+    LK R+ +   
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENATP 96


>gi|311279402|ref|YP_003941633.1| integration host factor, alpha subunit [Enterobacter cloacae SCF1]
 gi|308748597|gb|ADO48349.1| integration host factor, alpha subunit [Enterobacter cloacae SCF1]
          Length = 99

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 54/98 (55%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +++ I  RRVV F+    LK R+ +     +
Sbjct: 62  GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKAE 99


>gi|260772974|ref|ZP_05881890.1| integration host factor alpha subunit [Vibrio metschnikovii CIP
          69.14]
 gi|260612113|gb|EEX37316.1| integration host factor alpha subunit [Vibrio metschnikovii CIP
          69.14]
          Length = 98

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 54/92 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ ++ G S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAENLFEKLGFSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKSERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVEN 93


>gi|126641682|ref|YP_001084666.1| DNA-binding protein HU-beta [Acinetobacter baumannii ATCC 17978]
 gi|169633492|ref|YP_001707228.1| DNA-binding protein HU-beta [Acinetobacter baumannii SDF]
 gi|169796090|ref|YP_001713883.1| DNA-binding protein HU-beta [Acinetobacter baumannii AYE]
 gi|184157983|ref|YP_001846322.1| nucleoid DNA-binding protein [Acinetobacter baumannii ACICU]
 gi|213157177|ref|YP_002319222.1| DNA-binding protein HU [Acinetobacter baumannii AB0057]
 gi|215483545|ref|YP_002325764.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii
          AB307-0294]
 gi|239501896|ref|ZP_04661206.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii
          AB900]
 gi|260550155|ref|ZP_05824369.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624]
 gi|260555139|ref|ZP_05827360.1| integration host factor, beta subunit [Acinetobacter baumannii
          ATCC 19606]
 gi|262278966|ref|ZP_06056751.1| DNA-binding protein HU-beta [Acinetobacter calcoaceticus RUH2202]
 gi|293608200|ref|ZP_06690503.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|299770349|ref|YP_003732375.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter sp. DR1]
 gi|301347498|ref|ZP_07228239.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii
          AB056]
 gi|301511278|ref|ZP_07236515.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii
          AB058]
 gi|301597453|ref|ZP_07242461.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii
          AB059]
 gi|332851741|ref|ZP_08433666.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013150]
 gi|332865884|ref|ZP_08436664.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013113]
 gi|332874442|ref|ZP_08442345.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6014059]
 gi|126387566|gb|ABO12064.1| DNA-binding protein HU-beta [Acinetobacter baumannii ATCC 17978]
 gi|169149017|emb|CAM86894.1| DNA-binding protein HU-beta [Acinetobacter baumannii AYE]
 gi|169152284|emb|CAP01194.1| DNA-binding protein HU-beta [Acinetobacter baumannii]
 gi|183209577|gb|ACC56975.1| Bacterial nucleoid DNA-binding protein [Acinetobacter baumannii
          ACICU]
 gi|213056337|gb|ACJ41239.1| DNA-binding protein HU [Acinetobacter baumannii AB0057]
 gi|213986875|gb|ACJ57174.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii
          AB307-0294]
 gi|260406910|gb|EEX00389.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624]
 gi|260411681|gb|EEX04978.1| integration host factor, beta subunit [Acinetobacter baumannii
          ATCC 19606]
 gi|262259317|gb|EEY78050.1| DNA-binding protein HU-beta [Acinetobacter calcoaceticus RUH2202]
 gi|292828773|gb|EFF87135.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|298700437|gb|ADI91002.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter sp. DR1]
 gi|322508301|gb|ADX03755.1| hupB [Acinetobacter baumannii 1656-2]
 gi|323517927|gb|ADX92308.1| nucleoid DNA-binding protein [Acinetobacter baumannii
          TCDC-AB0715]
 gi|325122069|gb|ADY81592.1| DNA-binding protein HU-beta [Acinetobacter calcoaceticus PHEA-2]
 gi|332729748|gb|EGJ61083.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013150]
 gi|332734934|gb|EGJ66020.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013113]
 gi|332737286|gb|EGJ68210.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6014059]
          Length = 90

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+++ G+S+ D+ + +      I ++  +G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAEKGGVSKTDAGKALDATIASITEALKKGDTVTLVGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E++I   +V  FKA   LK  + 
Sbjct: 61 RNPKTGEELQIKATKVPSFKAGKGLKDSVA 90


>gi|149192496|ref|ZP_01870681.1| DNA-binding protein HU-beta [Vibrio shilonii AK1]
 gi|148833669|gb|EDL50721.1| DNA-binding protein HU-beta [Vibrio shilonii AK1]
          Length = 90

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 46/88 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I++   LS+  + R +      +  +   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVEKIAENADLSKASAGRALDAFIEAVSTTLEEGDQVALVGFGTFSVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN +T +E++I   +V  FKA   LK  
Sbjct: 61 RNPKTGEEIQISEAKVPAFKAGKALKDA 88


>gi|77919284|ref|YP_357099.1| DNA-binding protein HU-beta, NS1(HU-1) [Pelobacter carbinolicus
          DSM 2380]
 gi|77545367|gb|ABA88929.1| DNA-binding protein HU-beta, NS1(HU-1) [Pelobacter carbinolicus
          DSM 2380]
          Length = 90

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV +++++ GLS+ ++ + +    + I ++   GE + +  F TF V ++ +RVG
Sbjct: 1  MTKADLVNAMAEKAGLSKAETEKAIKAFTDVITEALKAGEKVALVGFGTFSVGERAARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT +++ I   +V  FK    LK  + 
Sbjct: 61 QNPQTGEKMNIPAAKVPKFKPGKALKDSVN 90


>gi|303239804|ref|ZP_07326328.1| histone family protein DNA-binding protein [Acetivibrio
          cellulolyticus CD2]
 gi|302592741|gb|EFL62465.1| histone family protein DNA-binding protein [Acetivibrio
          cellulolyticus CD2]
          Length = 91

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 53/91 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV S++++  LS+KD+ + +      + ++  +G+ I++  F +F V+++ +R G
Sbjct: 1  MNKTDLVASMAEKGDLSKKDAEKALNAFIESVEEALSQGDKIQLVGFGSFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E+ I   +  +FK    LK  +  
Sbjct: 61 RNPQTKEEINIPATKAPIFKVGKGLKDLVNK 91


>gi|290474660|ref|YP_003467540.1| DNA-binding protein HU-beta [Xenorhabdus bovienii SS-2004]
 gi|289173973|emb|CBJ80760.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Xenorhabdus
          bovienii SS-2004]
          Length = 96

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R V    + + D+   G+ + +  F TF V+++ +R G
Sbjct: 6  VNKSQLIDKIAADVNISKAAAGRVVDAFISSVSDALKDGDDVVLVGFGTFTVRERAARTG 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E+KI   +V  F+A   LK  + +
Sbjct: 66 RNPQTGKEIKIAAAKVPAFRAGKGLKDAVNE 96


>gi|154505532|ref|ZP_02042270.1| hypothetical protein RUMGNA_03069 [Ruminococcus gnavus ATCC
          29149]
 gi|153794190|gb|EDN76610.1| hypothetical protein RUMGNA_03069 [Ruminococcus gnavus ATCC
          29149]
          Length = 91

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+++  +S+KD+ + +    + + +    GE +++  F TF V ++ +R G
Sbjct: 1  MNKTELIAAIAEQAEISKKDAEKALKAFVDVVTEQLKEGEKVQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI   +   FKA   LK  + 
Sbjct: 61 RNPQTGKTMKIAACKAPKFKAGKALKDAVN 90


>gi|149190645|ref|ZP_01868913.1| bacterial nucleoid DNA-binding protein [Vibrio shilonii AK1]
 gi|148835528|gb|EDL52497.1| bacterial nucleoid DNA-binding protein [Vibrio shilonii AK1]
          Length = 90

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +    + + ++   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLSGVSEALTEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E++I    V  F A   LK  + 
Sbjct: 61 RNPKTGEEIQIAAANVPAFVAGKALKDAVK 90


>gi|90410619|ref|ZP_01218635.1| integration host factor alpha subunit [Photobacterium profundum
          3TCK]
 gi|90328860|gb|EAS45144.1| integration host factor alpha subunit [Photobacterium profundum
          3TCK]
          Length = 98

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 52/91 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL + + +  GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAEDLFENVGLSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +++ I  RRVV F+    LK R+ 
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVE 92


>gi|153835064|ref|ZP_01987731.1| DNA-binding protein HU-beta [Vibrio harveyi HY01]
 gi|153838911|ref|ZP_01991578.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ3810]
 gi|260902149|ref|ZP_05910544.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ4037]
 gi|269959588|ref|ZP_06173969.1| DNA-binding protein HU [Vibrio harveyi 1DA3]
 gi|148868460|gb|EDL67566.1| DNA-binding protein HU-beta [Vibrio harveyi HY01]
 gi|149747619|gb|EDM58543.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ3810]
 gi|269835646|gb|EEZ89724.1| DNA-binding protein HU [Vibrio harveyi 1DA3]
 gi|308110155|gb|EFO47695.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ4037]
 gi|328471094|gb|EGF42000.1| DNA-binding protein [Vibrio parahaemolyticus 10329]
          Length = 90

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +      +  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLEGVTGALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  E++I    V  F A   LK+ + 
Sbjct: 61 RNPKTGDEIQIAAANVPAFVAGKALKESVN 90


>gi|229170488|ref|ZP_04298139.1| DNA-binding protein HU [Bacillus cereus AH621]
 gi|228612958|gb|EEK70132.1| DNA-binding protein HU [Bacillus cereus AH621]
          Length = 90

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K ++++  L++KD+      L + I ++   GE ++I  F TF V+++ +R G
Sbjct: 1  MNKTELTKVVAEKAELTQKDAAAATQALLDTITNALANGEKVQILGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +   FKA   LK+ + 
Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELKEAVK 90


>gi|148244747|ref|YP_001219441.1| DNA-binding protein HU-beta [Candidatus Vesicomyosocius okutanii
          HA]
 gi|146326574|dbj|BAF61717.1| DNA-binding protein HU-beta [Candidatus Vesicomyosocius okutanii
          HA]
          Length = 91

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDLV  IS+   L++ DS R +  +   I  +   G+ + I+ F +F V+ + +R G
Sbjct: 1  MNKSDLVAVISQISNLTKADSARALDAMTGAITSALTSGDNVAITGFGSFVVRDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++I   +V  FKA  +LK+ + 
Sbjct: 61 RNPQTGEAIQIKASKVPAFKAGKLLKESVN 90


>gi|119384600|ref|YP_915656.1| integration host factor, alpha subunit [Paracoccus denitrificans
           PD1222]
 gi|166918513|sp|A1B366|IHFA_PARDP RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|119374367|gb|ABL69960.1| integration host factor, alpha subunit [Paracoccus denitrificans
           PD1222]
          Length = 102

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 44/97 (45%), Positives = 65/97 (67%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+TR DL +++ +E GLSR +S + V ++   I D+ VRGE +KISSF TF V+ K  R+
Sbjct: 5   TLTRMDLAEAVFREVGLSRHESAQLVESVLGHISDALVRGEQVKISSFGTFSVRDKNERI 64

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T +EV I PRRV+ F+ S ++K R+    R +
Sbjct: 65  GRNPKTGEEVPITPRRVLSFRPSHLMKDRVAAGNRRK 101


>gi|296102760|ref|YP_003612906.1| integration host factor subunit alpha [Enterobacter cloacae
          subsp. cloacae ATCC 13047]
 gi|295057219|gb|ADF61957.1| integration host factor subunit alpha [Enterobacter cloacae
          subsp. cloacae ATCC 13047]
          Length = 99

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 53/95 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +++ I  RRVV F+    LK R+ +   
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENATP 96


>gi|260779568|ref|ZP_05888458.1| DNA-binding protein HU-alpha [Vibrio coralliilyticus ATCC
          BAA-450]
 gi|260604377|gb|EEX30681.1| DNA-binding protein HU-alpha [Vibrio coralliilyticus ATCC
          BAA-450]
          Length = 90

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +    + + D+   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLDGVTDALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  E++I    V  F +   LK  + 
Sbjct: 61 RNPKTGDEIQIAAANVPAFVSGKALKDAVK 90


>gi|260768944|ref|ZP_05877878.1| DNA-binding protein HU-beta [Vibrio furnissii CIP 102972]
 gi|260616974|gb|EEX42159.1| DNA-binding protein HU-beta [Vibrio furnissii CIP 102972]
 gi|315180640|gb|ADT87554.1| DNA-binding protein HU-beta [Vibrio furnissii NCTC 11218]
          Length = 90

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 46/88 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I+    +S+  + R +      + D+   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVEQIAANADISKASAGRALDAFIEAVSDTLQSGDQVALVGFGTFAVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN +T +E++I   +V  FKA   LK  
Sbjct: 61 RNPKTGEEIQIAEAKVPAFKAGKALKDA 88


>gi|262044127|ref|ZP_06017202.1| integration host factor subunit alpha [Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884]
 gi|259038526|gb|EEW39722.1| integration host factor subunit alpha [Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884]
          Length = 99

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 53/93 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +++ I  RRVV F+    LK R+ + 
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94


>gi|15964977|ref|NP_385330.1| integration host factor subunit alpha [Sinorhizobium meliloti 1021]
 gi|150396054|ref|YP_001326521.1| integration host factor subunit alpha [Sinorhizobium medicae
           WSM419]
 gi|307301048|ref|ZP_07580817.1| integration host factor, alpha subunit [Sinorhizobium meliloti
           BL225C]
 gi|307317782|ref|ZP_07597220.1| integration host factor, alpha subunit [Sinorhizobium meliloti
           AK83]
 gi|21362610|sp|Q92QT3|IHFA_RHIME RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|166918530|sp|A6U7Q6|IHFA_SINMW RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|15074156|emb|CAC45803.1| Probable integration host factor alpha-subunit [Sinorhizobium
           meliloti 1021]
 gi|150027569|gb|ABR59686.1| integration host factor, alpha subunit [Sinorhizobium medicae
           WSM419]
 gi|306896544|gb|EFN27292.1| integration host factor, alpha subunit [Sinorhizobium meliloti
           AK83]
 gi|306904003|gb|EFN34589.1| integration host factor, alpha subunit [Sinorhizobium meliloti
           BL225C]
          Length = 112

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 54/111 (48%), Positives = 82/111 (73%), Gaps = 1/111 (0%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +S+ ++ GLSR +S   V T+ +EIC++ VRGE++K+SSFATF V+ K  
Sbjct: 3   GKTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGESVKLSSFATFQVRDKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSG 112
           R+GRN +T +EV I PRRV+ FKAS++LK+R++     RK +K   ++P+G
Sbjct: 63  RIGRNPKTGEEVPISPRRVMTFKASNVLKQRVLKAHLSRK-SKLKPSNPAG 112


>gi|229193754|ref|ZP_04320694.1| DNA-binding protein HU [Bacillus cereus ATCC 10876]
 gi|228589726|gb|EEK47605.1| DNA-binding protein HU [Bacillus cereus ATCC 10876]
          Length = 93

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 54/92 (58%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +++L K ++++  L++KD+      + + I ++   GE ++I  F TF V+++ +R
Sbjct: 2  QKMNKTELTKVVAEKAELTQKDAAAATQAVLDTITNALANGEKVQILGFGTFEVRERSAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E++I   +   FKA   LK+ + 
Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93


>gi|313905493|ref|ZP_07838857.1| histone family protein DNA-binding protein [Eubacterium
          cellulosolvens 6]
 gi|313469677|gb|EFR65015.1| histone family protein DNA-binding protein [Eubacterium
          cellulosolvens 6]
          Length = 90

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +IS++  L++K S   +    + + D+  +G+ +++  F TF V ++ +R G
Sbjct: 1  MNKTELIAAISEQTDLTKKQSEEALKAFVDVVADALKKGDKVQLVGFGTFEVSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +TN+ ++I   +   FKA   LK  I 
Sbjct: 61 RNPRTNETIEIAASKTPKFKAGKALKDLIK 90


>gi|254785728|ref|YP_003073157.1| DNA-binding protein HU-beta [Teredinibacter turnerae T7901]
 gi|239918950|gb|ACR13101.2| DNA-binding protein HU-beta [Teredinibacter turnerae T7901]
          Length = 90

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV++I+    +S+  + R +  +   I ++   G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSELVEAIAASADISKAAAGRALDAVTESIANALKEGDQVALVGFGTFLVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   ++I   ++  FKA   LK  + 
Sbjct: 61 RNPQTGDPIEIAAAKIPSFKAGKALKDAVN 90


>gi|225873248|ref|YP_002754707.1| DNA-binding protein HU 1 [Acidobacterium capsulatum ATCC 51196]
 gi|225792876|gb|ACO32966.1| DNA-binding protein HU 1 [Acidobacterium capsulatum ATCC 51196]
          Length = 107

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 60/107 (56%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++DLV+ ++K   L+R+D    V T+F+ +  +   G+ I+I  F +F V+Q+  RVG
Sbjct: 1   MTKADLVEELTKSGELTRRDGEVIVDTIFDSVIAALKSGDKIEIRGFGSFRVRQRNPRVG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111
           RN +T  +V +  ++V  FK S  L+  +       + + +D  S S
Sbjct: 61  RNPKTGAKVDVPAKKVPYFKPSKELRDLVNPHGDNGEDHGEDEDSGS 107


>gi|124494290|gb|ABN13185.1| non-specific DNA-binding protein HBsu [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|124494310|gb|ABN13204.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
 gi|124494330|gb|ABN13223.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
 gi|124494350|gb|ABN13242.1| non-specific DNA-binding protein HBsu [Bacillus subtilis subsp.
          spizizenii str. W23]
 gi|124494370|gb|ABN13261.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
 gi|124494390|gb|ABN13280.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
 gi|124494410|gb|ABN13299.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
 gi|124494429|gb|ABN13317.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
 gi|124494450|gb|ABN13337.1| non-specific DNA-binding protein HBsu [Bacillus subtilis subsp.
          subtilis str. SMY]
 gi|124494470|gb|ABN13356.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
 gi|124494490|gb|ABN13375.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
 gi|124494510|gb|ABN13394.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
 gi|124494530|gb|ABN13413.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
          Length = 86

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 51/85 (60%)

Query: 11 VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTN 70
          + ++++   LS+KD+T+ V ++F+ I D+   G+ I++  F  F V+++ +R GRN QT 
Sbjct: 1  INAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKGRNPQTG 60

Query: 71 QEVKIDPRRVVVFKASSILKKRIMD 95
          +E++I   +V  FK    LK  +  
Sbjct: 61 EEIEIPASKVPAFKPGKALKDAVAG 85


>gi|88860448|ref|ZP_01135086.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas
          tunicata D2]
 gi|88817646|gb|EAR27463.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas
          tunicata D2]
          Length = 90

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R + +  + +  +   G+++ +  F +F V+++ +R G
Sbjct: 1  MNKSQLIDEIAAGADISKAAAGRALDSFIDAVTTALKDGDSVALVGFGSFSVRERAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   ++I    +  FKA   LK  + 
Sbjct: 61 RNPQTGATIEIAAANIPSFKAGKALKDAVN 90


>gi|114332285|ref|YP_748507.1| integration host factor subunit alpha [Nitrosomonas eutropha C91]
 gi|122313054|sp|Q0ADP0|IHFA_NITEC RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|114309299|gb|ABI60542.1| integration host factor, alpha subunit [Nitrosomonas eutropha C91]
          Length = 102

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 54/98 (55%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T+++L   + +  GL+++++   V   + E+  +   G+ +K+S F  F ++ K  R 
Sbjct: 2   ALTKAELTDLLFENIGLNKREAKEIVECFYEEMRTALQNGDGVKLSGFGNFQLRTKPQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +E+ I  RRVV F AS  LK  +  + RG  
Sbjct: 62  GRNPKTGEEIPISARRVVTFHASQKLKSMVEANYRGEP 99


>gi|323498279|ref|ZP_08103281.1| DNA-binding protein HU-beta [Vibrio sinaloensis DSM 21326]
 gi|323316707|gb|EGA69716.1| DNA-binding protein HU-beta [Vibrio sinaloensis DSM 21326]
          Length = 90

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 48/88 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I++   LS+  + R +  L   + ++   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVEKIAENADLSKASAGRALDALIEAVGETLQSGDQVALVGFGTFSVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN +T +E++I   +V  FKA   LK  
Sbjct: 61 RNPKTGEEIQIAEAKVPSFKAGKALKDA 88


>gi|163735834|ref|ZP_02143263.1| integration host factor, alpha subunit [Roseobacter litoralis Och
          149]
 gi|161390920|gb|EDQ15260.1| integration host factor, alpha subunit [Roseobacter litoralis Och
          149]
          Length = 100

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 44/96 (45%), Positives = 67/96 (69%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++ +E GLSR +S + V ++   + D+ V GE +KISSF TF V+ K +R
Sbjct: 4  KTLTRMDLSEAVFREVGLSRNESAQLVESVLEHLSDALVSGEQVKISSFGTFSVRDKSAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          VGRN +T +EV I+PRRV+ F+ S ++K R+ D  +
Sbjct: 64 VGRNPKTGEEVPINPRRVLTFRPSHLMKDRVADGNK 99


>gi|88706038|ref|ZP_01103746.1| Integration host factor alpha-subunit [Congregibacter litoralis
          KT71]
 gi|254515023|ref|ZP_05127084.1| integration host factor, alpha subunit [gamma proteobacterium
          NOR5-3]
 gi|88699752|gb|EAQ96863.1| Integration host factor alpha-subunit [Congregibacter litoralis
          KT71]
 gi|219677266|gb|EED33631.1| integration host factor, alpha subunit [gamma proteobacterium
          NOR5-3]
          Length = 101

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 1/95 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS  +T+S++ + + +E GL+++++   V   F EI       E +K+S F  F ++ K 
Sbjct: 1  MS-ALTKSEMAERLFEELGLNKREAKEIVELFFEEIRVCLENNEQVKLSGFGNFDLRDKN 59

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R GRN +T +E+ I  RRVV F+    LK R+ +
Sbjct: 60 QRPGRNPKTGEEIPISARRVVTFRPGQKLKARVEE 94


>gi|294141765|ref|YP_003557743.1| HU family DNA-binding protein [Shewanella violacea DSS12]
 gi|293328234|dbj|BAJ02965.1| DNA-binding protein, HU family [Shewanella violacea DSS12]
          Length = 90

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + +    + D    G+ I +  F TF V+Q+  R G
Sbjct: 1  MNKSELIEKIASGADISKAAAGRALDSFIGAVTDGLKDGDKISLVGFGTFEVRQRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E+KI    +  FKA   LK  + 
Sbjct: 61 RNPQTGAEIKIAAANIPAFKAGKALKDAVN 90


>gi|255282032|ref|ZP_05346587.1| DNA-binding protein HU [Bryantella formatexigens DSM 14469]
 gi|255267351|gb|EET60556.1| DNA-binding protein HU [Bryantella formatexigens DSM 14469]
          Length = 91

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+KE  LS+KD+   V    + +     +GE +++  F TF V ++ +R G
Sbjct: 1  MNKTELIAAIAKETELSKKDAELAVKAFTDVVTAELKKGEKVQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + + I   +   FKA   LK  + +
Sbjct: 61 RNPQTGESMSIQASKTPKFKAGKALKDAVNN 91


>gi|37527726|ref|NP_931071.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photorhabdus luminescens
          subsp. laumondii TTO1]
 gi|36787162|emb|CAE16238.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photorhabdus luminescens
          subsp. laumondii TTO1]
          Length = 91

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R V    + +  +   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAADSNISKAAAGRVVDAFISSVTGALKDGDDVALVGFGTFAVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E+KI   +V  F+    LK  +  
Sbjct: 61 RNPQTGKELKIAAAKVPAFRPGKGLKDAVNG 91


>gi|83311454|ref|YP_421718.1| integration host factor subunit alpha [Magnetospirillum magneticum
           AMB-1]
 gi|123740482|sp|Q2W4R6|IHFA_MAGMM RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|82946295|dbj|BAE51159.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum
           AMB-1]
          Length = 106

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 46/99 (46%), Positives = 70/99 (70%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KTITR+ L +++ +E GLSR +S   +  + +EI  +  +G+A+KISSF +F V+ KG R
Sbjct: 4   KTITRAQLSEAVYQEVGLSRNESADLLEAVLDEISGALAKGDAVKISSFGSFSVRSKGQR 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           +GRN +T +EV I PRRV+VF+ S +LKK+I D M  ++
Sbjct: 64  IGRNPKTGEEVPITPRRVLVFRPSQLLKKKINDGMAAKR 102


>gi|238855192|ref|ZP_04645511.1| DNA-binding protein HU [Lactobacillus jensenii 269-3]
 gi|260664555|ref|ZP_05865407.1| integration host factor, beta subunit [Lactobacillus jensenii
          SJ-7A-US]
 gi|282932514|ref|ZP_06337939.1| DNA-binding protein HU [Lactobacillus jensenii 208-1]
 gi|313471979|ref|ZP_07812471.1| DNA-binding protein HU [Lactobacillus jensenii 1153]
 gi|238832084|gb|EEQ24402.1| DNA-binding protein HU [Lactobacillus jensenii 269-3]
 gi|239529089|gb|EEQ68090.1| DNA-binding protein HU [Lactobacillus jensenii 1153]
 gi|260561620|gb|EEX27592.1| integration host factor, beta subunit [Lactobacillus jensenii
          SJ-7A-US]
 gi|281303463|gb|EFA95640.1| DNA-binding protein HU [Lactobacillus jensenii 208-1]
          Length = 91

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 48/89 (53%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV  ++ +  L++KD    V  +F  I +   +GE +++  F TF V+ + +R GR
Sbjct: 3  NKAELVAEVAAKTKLTKKDVAAAVDAIFASIQEDLAKGEKVQLIGFGTFEVRNRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E++I   +V  FK    LK  + 
Sbjct: 63 NPQTGVEIEIPASKVPAFKPGKALKDAVK 91


>gi|161503552|ref|YP_001570664.1| integration host factor subunit alpha [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189044705|sp|A9MFB7|IHFA_SALAR RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|160864899|gb|ABX21522.1| hypothetical protein SARI_01630 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 99

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 54/98 (55%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +++ I  RRVV F+    LK R+ +     +
Sbjct: 62  GRNPKTGEDIPITARRVVTFRPGQKLKSRVENAAPKEE 99


>gi|256851012|ref|ZP_05556401.1| integration host factor, beta subunit [Lactobacillus jensenii
          27-2-CHN]
 gi|260661224|ref|ZP_05862138.1| integration host factor, beta subunit [Lactobacillus jensenii
          115-3-CHN]
 gi|282932035|ref|ZP_06337493.1| DNA-binding protein HU [Lactobacillus jensenii 208-1]
 gi|256616074|gb|EEU21262.1| integration host factor, beta subunit [Lactobacillus jensenii
          27-2-CHN]
 gi|260548161|gb|EEX24137.1| integration host factor, beta subunit [Lactobacillus jensenii
          115-3-CHN]
 gi|281303802|gb|EFA95946.1| DNA-binding protein HU [Lactobacillus jensenii 208-1]
          Length = 91

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 47/89 (52%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV  ++ +  L++KD    V  +F  I     +GE +++  F TF V+ + +R GR
Sbjct: 3  NKAELVAEVAAKTKLTKKDVAAAVDAIFASIQQDLAKGEKVQLIGFGTFEVRNRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E++I   +V  FK    LK  + 
Sbjct: 63 NPQTGVEIEIPASKVPAFKPGKALKDAVK 91


>gi|188533971|ref|YP_001907768.1| integration host factor subunit alpha [Erwinia tasmaniensis
          Et1/99]
 gi|292488135|ref|YP_003531012.1| integration host factor subunit alpha [Erwinia amylovora
          CFBP1430]
 gi|292899346|ref|YP_003538715.1| integration host factor alpha-subunit [Erwinia amylovora ATCC
          49946]
 gi|300716465|ref|YP_003741268.1| Integration host factor alpha-subunit (IHF-alpha) [Erwinia
          billingiae Eb661]
 gi|226709728|sp|B2VEL2|IHFA_ERWT9 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|188029013|emb|CAO96881.1| Integration host factor alpha-subunit (IHF-alpha) [Erwinia
          tasmaniensis Et1/99]
 gi|291199194|emb|CBJ46308.1| integration host factor alpha-subunit [Erwinia amylovora ATCC
          49946]
 gi|291553559|emb|CBA20604.1| Integration host factor subunit alpha (IHF-alpha) [Erwinia
          amylovora CFBP1430]
 gi|299062301|emb|CAX59418.1| Integration host factor alpha-subunit (IHF-alpha) [Erwinia
          billingiae Eb661]
 gi|312172267|emb|CBX80524.1| Integration host factor subunit alpha (IHF-alpha) [Erwinia
          amylovora ATCC BAA-2158]
          Length = 99

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 54/95 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +++ I  RRVV F+    LK R+ +   
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENATP 96


>gi|319763191|ref|YP_004127128.1| integration host factor, alpha subunit [Alicycliphilus
           denitrificans BC]
 gi|330825385|ref|YP_004388688.1| integration host factor subunit alpha [Alicycliphilus denitrificans
           K601]
 gi|317117752|gb|ADV00241.1| integration host factor, alpha subunit [Alicycliphilus
           denitrificans BC]
 gi|329310757|gb|AEB85172.1| integration host factor, alpha subunit [Alicycliphilus
           denitrificans K601]
          Length = 117

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 56/97 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S  +T++ L   + +  GL++++S   V   F+ I  S V G+ +K+S F  F ++ K  
Sbjct: 19  SPALTKAQLADLLFEHIGLNKRESKDMVDAFFDLIVQSLVDGQDVKLSGFGNFQIRTKAP 78

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           R GRN +T + + I+ RRVV F ASS LK++I    +
Sbjct: 79  RPGRNPRTGETIPIEARRVVTFHASSKLKEQIQGRSK 115


>gi|260433446|ref|ZP_05787417.1| integration host factor, alpha subunit [Silicibacter
          lacuscaerulensis ITI-1157]
 gi|260417274|gb|EEX10533.1| integration host factor, alpha subunit [Silicibacter
          lacuscaerulensis ITI-1157]
          Length = 100

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/96 (46%), Positives = 67/96 (69%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++ +E GLSR +S + V ++ N + D+ VRGE +KISSF TF V+ K +R
Sbjct: 4  KTLTRMDLSEAVFREVGLSRNESAQLVESILNHMSDALVRGEQVKISSFGTFSVRDKSAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          +GRN +T +EV I PRRV+ F+ S ++K R+    R
Sbjct: 64 IGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVAAGNR 99


>gi|258542774|ref|YP_003188207.1| integration host factor DNA-binding subunit alpha [Acetobacter
           pasteurianus IFO 3283-01]
 gi|329114627|ref|ZP_08243386.1| Integration host factor subunit alpha [Acetobacter pomorum DM001]
 gi|256633852|dbj|BAH99827.1| integration host factor DNA-binding alpha subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636911|dbj|BAI02880.1| integration host factor DNA-binding alpha subunit [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639964|dbj|BAI05926.1| integration host factor DNA-binding alpha subunit [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256643020|dbj|BAI08975.1| integration host factor DNA-binding alpha subunit [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256646075|dbj|BAI12023.1| integration host factor DNA-binding alpha subunit [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256649128|dbj|BAI15069.1| integration host factor DNA-binding alpha subunit [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256652115|dbj|BAI18049.1| integration host factor DNA-binding alpha subunit [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256655172|dbj|BAI21099.1| integration host factor DNA-binding alpha subunit [Acetobacter
           pasteurianus IFO 3283-12]
 gi|326696107|gb|EGE47789.1| Integration host factor subunit alpha [Acetobacter pomorum DM001]
          Length = 106

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/103 (38%), Positives = 66/103 (64%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+TR+ L++ I ++ GLSRK+S+  +  +   + D+  RGE++KIS F TF V++KG R
Sbjct: 2   ETVTRASLIEQIYQQVGLSRKESSVLLEDVLETVMDALERGESVKISGFGTFSVRKKGQR 61

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
            GRN +T +EV I PR V+VF+ S +L+  +  +    +   D
Sbjct: 62  SGRNPKTGEEVPILPRSVLVFRPSQLLRAEVNHETLDAEAEHD 104


>gi|238783379|ref|ZP_04627402.1| Integration host factor subunit alpha [Yersinia bercovieri ATCC
          43970]
 gi|238791696|ref|ZP_04635333.1| Integration host factor subunit alpha [Yersinia intermedia ATCC
          29909]
 gi|238797375|ref|ZP_04640875.1| Integration host factor subunit alpha [Yersinia mollaretii ATCC
          43969]
 gi|238715624|gb|EEQ07613.1| Integration host factor subunit alpha [Yersinia bercovieri ATCC
          43970]
 gi|238718806|gb|EEQ10622.1| Integration host factor subunit alpha [Yersinia mollaretii ATCC
          43969]
 gi|238728800|gb|EEQ20317.1| Integration host factor subunit alpha [Yersinia intermedia ATCC
          29909]
          Length = 98

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 53/95 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +++ I  RRVV F+    LK R+     
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEGATP 96


>gi|109898808|ref|YP_662063.1| integration host factor, alpha subunit [Pseudoalteromonas
          atlantica T6c]
 gi|332306904|ref|YP_004434755.1| integration host factor, alpha subunit [Glaciecola agarilytica
          4H-3-7+YE-5]
 gi|122971862|sp|Q15SX9|IHFA_PSEA6 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|109701089|gb|ABG41009.1| integration host factor, alpha subunit [Pseudoalteromonas
          atlantica T6c]
 gi|332174233|gb|AEE23487.1| integration host factor, alpha subunit [Glaciecola agarilytica
          4H-3-7+YE-5]
          Length = 98

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 56/92 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ G++++D+   V   F E+ ++   GE +K+S F  F ++QK  R 
Sbjct: 2  ALTKAEMAEHLFEKLGMNKRDAKDLVEAFFEEVREALESGEQVKLSGFGNFDLRQKSERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 62 GRNPKTGEDIPIKARRVVTFRPGQKLKSRVEN 93


>gi|323143441|ref|ZP_08078124.1| DNA-binding protein HU-beta [Succinatimonas hippei YIT 12066]
 gi|322416726|gb|EFY07377.1| DNA-binding protein HU-beta [Succinatimonas hippei YIT 12066]
          Length = 91

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 53/91 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S LV SI+K+ GLS KDS   +      + D+  +G++I +  F TF V+ + +RVG
Sbjct: 1  MNKSQLVSSIAKQSGLSLKDSNAALNAFLETVKDTLAKGDSISLVGFGTFLVRDRAARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T +EVKI   +V  FKA    K ++  
Sbjct: 61 RNPRTKEEVKIPAVKVPAFKAGKPFKDKVNG 91


>gi|242239477|ref|YP_002987658.1| integration host factor subunit alpha [Dickeya dadantii Ech703]
 gi|242131534|gb|ACS85836.1| integration host factor, alpha subunit [Dickeya dadantii Ech703]
          Length = 99

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 54/93 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +++ I  RRVV F+    LK R+ + 
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94


>gi|27365694|ref|NP_761222.1| integration host factor subunit alpha [Vibrio vulnificus CMCP6]
 gi|37680150|ref|NP_934759.1| integration host factor subunit alpha [Vibrio vulnificus YJ016]
 gi|320156101|ref|YP_004188480.1| integration host factor subunit alpha [Vibrio vulnificus
          MO6-24/O]
 gi|33301286|sp|Q8DA35|IHFA_VIBVU RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|61213547|sp|Q7MK44|IHFA_VIBVY RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|27361843|gb|AAO10749.1| integration host factor, alpha subunit [Vibrio vulnificus CMCP6]
 gi|37198896|dbj|BAC94730.1| integration host factor, alpha subunit [Vibrio vulnificus YJ016]
 gi|319931413|gb|ADV86277.1| integration host factor alpha subunit [Vibrio vulnificus
          MO6-24/O]
          Length = 95

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 54/92 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ ++ G S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAENLFEKLGFSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARVEN 93


>gi|251789564|ref|YP_003004285.1| integration host factor subunit alpha [Dickeya zeae Ech1591]
 gi|271500486|ref|YP_003333511.1| integration host factor subunit alpha [Dickeya dadantii Ech586]
 gi|307131171|ref|YP_003883187.1| integration host factor (IHF), DNA-binding protein, subunit alpha
          [Dickeya dadantii 3937]
 gi|585306|sp|P37982|IHFA_DICD3 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|399668|emb|CAA52768.1| integration host factor alpha subunit [Erwinia chrysanthemi]
 gi|247538185|gb|ACT06806.1| integration host factor, alpha subunit [Dickeya zeae Ech1591]
 gi|270344041|gb|ACZ76806.1| integration host factor, alpha subunit [Dickeya dadantii Ech586]
 gi|306528700|gb|ADM98630.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Dickeya dadantii 3937]
 gi|1093152|prf||2103145A integration host factor
          Length = 99

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 54/93 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +++ I  RRVV F+    LK R+ + 
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94


>gi|119476199|ref|ZP_01616551.1| DNA-binding protein HU [marine gamma proteobacterium HTCC2143]
 gi|119450826|gb|EAW32060.1| DNA-binding protein HU [marine gamma proteobacterium HTCC2143]
          Length = 90

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I+    L +  + R +  +   +  +   G+ + +  F TF VK + +R G
Sbjct: 1  MNKSELIEAIAASADLPKAAAGRALDAMVETVTGALKDGDQVVLVGFGTFAVKDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGAEIQIKAAKVPGFKAGKALKDAVN 90


>gi|114562885|ref|YP_750398.1| integration host factor, alpha subunit [Shewanella frigidimarina
           NCIMB 400]
 gi|122299977|sp|Q083K5|IHFA_SHEFN RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|114334178|gb|ABI71560.1| integration host factor, alpha subunit [Shewanella frigidimarina
           NCIMB 400]
          Length = 99

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 56/98 (57%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ + + +  G++++ +   V + F EI ++   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAEMAEHLFETLGINKRVAKEMVESFFEEIREALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +++ I  RRVV F+    LK R+     G+K
Sbjct: 62  GRNPKTGEDIPISARRVVTFRPGQKLKSRVEAANSGKK 99


>gi|304397622|ref|ZP_07379499.1| integration host factor, alpha subunit [Pantoea sp. aB]
 gi|308186652|ref|YP_003930783.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea
          vagans C9-1]
 gi|304354794|gb|EFM19164.1| integration host factor, alpha subunit [Pantoea sp. aB]
 gi|308057162|gb|ADO09334.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea
          vagans C9-1]
          Length = 100

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 54/95 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +++ I  RRVV F+    LK R+ +   
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENATP 96


>gi|89094709|ref|ZP_01167645.1| integration host factor, alpha subunit [Oceanospirillum sp.
          MED92]
 gi|89081055|gb|EAR60291.1| integration host factor, alpha subunit [Oceanospirillum sp.
          MED92]
          Length = 101

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 57/94 (60%), Gaps = 1/94 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS ++T++D+ + +++E GL+++++   V + F+EI       E +K+S F  F ++ K 
Sbjct: 1  MS-SLTKADMAERLNEELGLNKREAKEMVESFFDEIRACLAANEQVKLSGFGNFDLRDKR 59

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           R GRN +T +EV I  RRVV F+    LK R+ 
Sbjct: 60 QRPGRNPKTGEEVPISARRVVTFRPGQKLKDRVE 93


>gi|326386988|ref|ZP_08208598.1| integration host factor, alpha subunit [Novosphingobium
          nitrogenifigens DSM 19370]
 gi|326208169|gb|EGD58976.1| integration host factor, alpha subunit [Novosphingobium
          nitrogenifigens DSM 19370]
          Length = 93

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/89 (47%), Positives = 61/89 (68%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +TR+DL +SI++  GLSR +S   V  + +++CD+   GE +KIS F TF ++ K  R+G
Sbjct: 1  MTRADLAESINRRVGLSRAESLEMVEAILSQMCDALAEGENVKISGFGTFLLRDKAERIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  EV I PRRV+ F+AS +LK RI
Sbjct: 61 RNPKTGVEVPITPRRVLTFRASQMLKDRI 89


>gi|218710171|ref|YP_002417792.1| DNA-binding protein HU-beta [Vibrio splendidus LGP32]
 gi|218323190|emb|CAV19367.1| DNA-binding protein HU-beta [Vibrio splendidus LGP32]
          Length = 97

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 49/91 (53%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           KT+ ++ LV+SI++   +S+  + R +      +  +   G+ + +  F TF V+ + +
Sbjct: 5  GKTVNKTQLVESIAENADISKASAGRALDAFIEAVGTTLQSGDQVALVGFGTFSVRTRAA 64

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          R GRN +T +E++I   +V  FKA   LK  
Sbjct: 65 RTGRNPKTGEEIQIAEAKVPGFKAGKALKDA 95


>gi|22125804|ref|NP_669227.1| integration host factor subunit alpha [Yersinia pestis KIM 10]
 gi|45442004|ref|NP_993543.1| integration host factor subunit alpha [Yersinia pestis biovar
          Microtus str. 91001]
 gi|51596659|ref|YP_070850.1| integration host factor subunit alpha [Yersinia
          pseudotuberculosis IP 32953]
 gi|108807766|ref|YP_651682.1| integration host factor subunit alpha [Yersinia pestis Antiqua]
 gi|108812043|ref|YP_647810.1| integration host factor subunit alpha [Yersinia pestis Nepal516]
 gi|123442195|ref|YP_001006176.1| integration host factor subunit alpha [Yersinia enterocolitica
          subsp. enterocolitica 8081]
 gi|145598026|ref|YP_001162102.1| integration host factor subunit alpha [Yersinia pestis Pestoides
          F]
 gi|149365665|ref|ZP_01887700.1| integration host factor alpha-subunit [Yersinia pestis CA88-4125]
 gi|153948307|ref|YP_001400695.1| integration host factor subunit alpha [Yersinia
          pseudotuberculosis IP 31758]
 gi|162420689|ref|YP_001607026.1| integration host factor subunit alpha [Yersinia pestis Angola]
 gi|165927499|ref|ZP_02223331.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165939484|ref|ZP_02228030.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|166011822|ref|ZP_02232720.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166211124|ref|ZP_02237159.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|167400951|ref|ZP_02306457.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167422126|ref|ZP_02313879.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167424960|ref|ZP_02316713.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|170024065|ref|YP_001720570.1| integration host factor subunit alpha [Yersinia
          pseudotuberculosis YPIII]
 gi|186895716|ref|YP_001872828.1| integration host factor subunit alpha [Yersinia
          pseudotuberculosis PB1/+]
 gi|218929515|ref|YP_002347390.1| integration host factor subunit alpha [Yersinia pestis CO92]
 gi|229837952|ref|ZP_04458111.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229895112|ref|ZP_04510288.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Yersinia pestis Pestoides A]
 gi|229898513|ref|ZP_04513658.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Yersinia pestis biovar Orientalis str. India 195]
 gi|229902354|ref|ZP_04517474.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Yersinia pestis Nepal516]
 gi|238749476|ref|ZP_04610981.1| Integration host factor subunit alpha [Yersinia rohdei ATCC
          43380]
 gi|238765301|ref|ZP_04626228.1| Integration host factor subunit alpha [Yersinia kristensenii ATCC
          33638]
 gi|238787094|ref|ZP_04630894.1| Integration host factor subunit alpha [Yersinia frederiksenii
          ATCC 33641]
 gi|270490464|ref|ZP_06207538.1| integration host factor, alpha subunit [Yersinia pestis KIM D27]
 gi|332161617|ref|YP_004298194.1| integration host factor subunit alpha [Yersinia enterocolitica
          subsp. palearctica 105.5R(r)]
 gi|21362607|sp|Q8ZDX2|IHFA_YERPE RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|55977891|sp|Q9X9F6|IHFA_YERPS RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|122979583|sp|Q1C735|IHFA_YERPA RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123373196|sp|Q1CIH0|IHFA_YERPN RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|166918533|sp|A1JMM4|IHFA_YERE8 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|166918534|sp|A7FHG7|IHFA_YERP3 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|166918535|sp|A4TIL7|IHFA_YERPP RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709763|sp|B2K662|IHFA_YERPB RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709764|sp|A9R0A2|IHFA_YERPG RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709765|sp|B1JJ23|IHFA_YERPY RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|21958730|gb|AAM85478.1|AE013793_14 integration host factor (IHF), alpha subunit [Yersinia pestis KIM
          10]
 gi|45436867|gb|AAS62420.1| integration host factor alpha-subunit [Yersinia pestis biovar
          Microtus str. 91001]
 gi|51589941|emb|CAH21573.1| integration host factor alpha-subunit [Yersinia
          pseudotuberculosis IP 32953]
 gi|108775691|gb|ABG18210.1| integration host factor alpha-subunit [Yersinia pestis Nepal516]
 gi|108779679|gb|ABG13737.1| integration host factor alpha-subunit [Yersinia pestis Antiqua]
 gi|115348126|emb|CAL21054.1| integration host factor alpha-subunit [Yersinia pestis CO92]
 gi|122089156|emb|CAL11998.1| integration host factor alpha-subunit [Yersinia enterocolitica
          subsp. enterocolitica 8081]
 gi|145209722|gb|ABP39129.1| integration host factor alpha-subunit [Yersinia pestis Pestoides
          F]
 gi|149292078|gb|EDM42152.1| integration host factor alpha-subunit [Yersinia pestis CA88-4125]
 gi|152959802|gb|ABS47263.1| integration host factor, alpha subunit [Yersinia
          pseudotuberculosis IP 31758]
 gi|162353504|gb|ABX87452.1| integration host factor, alpha subunit [Yersinia pestis Angola]
 gi|165912533|gb|EDR31164.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|165920554|gb|EDR37831.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165989287|gb|EDR41588.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166208304|gb|EDR52784.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|166958938|gb|EDR55959.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167049804|gb|EDR61212.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167056147|gb|EDR65925.1| integration host factor, alpha subunit [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|169750599|gb|ACA68117.1| integration host factor, alpha subunit [Yersinia
          pseudotuberculosis YPIII]
 gi|186698742|gb|ACC89371.1| integration host factor, alpha subunit [Yersinia
          pseudotuberculosis PB1/+]
 gi|229680689|gb|EEO76785.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Yersinia pestis Nepal516]
 gi|229688061|gb|EEO80132.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Yersinia pestis biovar Orientalis str. India 195]
 gi|229694318|gb|EEO84365.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701874|gb|EEO89897.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Yersinia pestis Pestoides A]
 gi|238696474|gb|EEP89264.1| Integration host factor subunit alpha [Yersinia kristensenii ATCC
          33638]
 gi|238712131|gb|EEQ04344.1| Integration host factor subunit alpha [Yersinia rohdei ATCC
          43380]
 gi|238724882|gb|EEQ16522.1| Integration host factor subunit alpha [Yersinia frederiksenii
          ATCC 33641]
 gi|270338968|gb|EFA49745.1| integration host factor, alpha subunit [Yersinia pestis KIM D27]
 gi|318605892|emb|CBY27390.1| integration host factor alpha subunit [Yersinia enterocolitica
          subsp. palearctica Y11]
 gi|320015082|gb|ADV98653.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Yersinia pestis biovar Medievalis str. Harbin 35]
 gi|325665847|gb|ADZ42491.1| integration host factor subunit alpha [Yersinia enterocolitica
          subsp. palearctica 105.5R(r)]
          Length = 98

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 53/95 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +++ I  RRVV F+    LK R+     
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVESATP 96


>gi|328543684|ref|YP_004303793.1| Histone-like DNA-binding protein [polymorphum gilvum SL003B-26A1]
 gi|326413428|gb|ADZ70491.1| Histone-like DNA-binding protein [Polymorphum gilvum SL003B-26A1]
          Length = 91

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++ GL++  +   V   F+ +  +   G+ ++I  F  F V ++ +  G
Sbjct: 1  MNKNDLIAAVAEKTGLTKAQAGEAVDATFDAVTATLKAGDEVRIIGFGNFSVSERAATEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + +KI   +   FKA   LK  +  
Sbjct: 61 RNPRTGETIKIPASKTPKFKAGKGLKDAVNG 91


>gi|260580507|ref|ZP_05848335.1| integration host factor, beta subunit [Haemophilus influenzae RdAW]
 gi|260092849|gb|EEW76784.1| integration host factor, beta subunit [Haemophilus influenzae RdAW]
          Length = 112

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 48/92 (52%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           K + ++DL+ +I+    L++K +   +    + I  S   GE +++  F TF V ++ +R
Sbjct: 21  KFMNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAAR 80

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            GRN QT  E++I   +V  F +   LK  I 
Sbjct: 81  TGRNPQTGAEIQIAASKVPAFVSGKALKDAIK 112


>gi|261821457|ref|YP_003259563.1| integration host factor subunit alpha [Pectobacterium wasabiae
          WPP163]
 gi|261605470|gb|ACX87956.1| integration host factor, alpha subunit [Pectobacterium wasabiae
          WPP163]
          Length = 98

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 54/93 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +++ I  RRVV F+    LK R+ + 
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94


>gi|190573025|ref|YP_001970870.1| putative DNA-binding protein HU-beta [Stenotrophomonas
          maltophilia K279a]
 gi|190010947|emb|CAQ44556.1| putative DNA-binding protein HU-beta [Stenotrophomonas
          maltophilia K279a]
          Length = 90

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   L++ +S+R V  +   I  +   G+A+ +  F TF V+ + +R G
Sbjct: 1  MNKTELIDAVAEAADLTKAESSRAVDAVVAAITKALKDGDAVTLVGFGTFQVRDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   +   FKA   LK  + 
Sbjct: 61 RNPKTGDTIKIAASKNPSFKAGKALKDAVN 90


>gi|85059402|ref|YP_455104.1| integration host factor subunit alpha [Sodalis glossinidius str.
          'morsitans']
 gi|123725404|sp|Q2NT26|IHFA_SODGM RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|84779922|dbj|BAE74699.1| integration host factor alpha subunit [Sodalis glossinidius str.
          'morsitans']
          Length = 98

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 54/93 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKEIVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +++ I  RRVV F+    LK R+ + 
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94


>gi|291326896|ref|ZP_06126254.2| DNA-binding protein HU-beta [Providencia rettgeri DSM 1131]
 gi|291312425|gb|EFE52878.1| DNA-binding protein HU-beta [Providencia rettgeri DSM 1131]
          Length = 96

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  +S+  + R V      +  S  +G+ + +  F TF V+++ +R G
Sbjct: 6  VNKAQLIDQIASDANISKAAAGRVVDAFVATVTGSLSKGDDVALVGFGTFSVRERAARTG 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI   +V  F+    LK  + 
Sbjct: 66 RNPQTGKEIKIAAAKVPAFRPGKGLKDAVN 95


>gi|153871697|ref|ZP_02000804.1| DNA-binding protein HU [Beggiatoa sp. PS]
 gi|152071839|gb|EDN69198.1| DNA-binding protein HU [Beggiatoa sp. PS]
          Length = 90

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++++++   +++  + + V  +   I D+    +++ +  F TF V+++ +RVG
Sbjct: 1  MNKSELIQAVAESAEITKGQAGKAVDAVIESIKDALAEADSVTLIGFGTFTVRERAARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I    V VFK    LK  + 
Sbjct: 61 RNPRTGERLDIKAANVPVFKPGKALKDAVN 90


>gi|1706310|sp|P52681|DBHB_SERMA RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1;
          AltName: Full=NS1
 gi|802008|gb|AAA65988.1| HU beta [Serratia marcescens]
 gi|1586263|prf||2203354B heterodimeric HU protein
          Length = 90

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + DS   G+ + +  F +F V+++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDAVIASVTDSLKAGDDVALVGFGSFTVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI  R+V  F+A   LK  + 
Sbjct: 61 RNPQTGKEIKIAARKVPAFRAGKALKDAVN 90


>gi|117924608|ref|YP_865225.1| integration host factor, subunit alpha [Magnetococcus sp. MC-1]
 gi|117926119|ref|YP_866736.1| integration host factor, subunit alpha [Magnetococcus sp. MC-1]
 gi|117608364|gb|ABK43819.1| integration host factor, alpha subunit [Magnetococcus sp. MC-1]
 gi|117609875|gb|ABK45330.1| integration host factor, alpha subunit [Magnetococcus sp. MC-1]
          Length = 96

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/93 (40%), Positives = 57/93 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++D+V+++    GLS+K+S   V ++F  I      GE +KIS F  F ++ K  R 
Sbjct: 2  TMTKADIVQTVYHRLGLSKKESADVVESVFELIRSQLESGEPVKISGFGGFSIRDKKPRQ 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T ++V+I  RRVV FKAS IL  R+   
Sbjct: 62 GRNPKTGEDVEISARRVVTFKASQILLDRVNKG 94


>gi|89074399|ref|ZP_01160881.1| integration host factor alpha subunit [Photobacterium sp. SKA34]
 gi|90579644|ref|ZP_01235453.1| integration host factor alpha subunit [Vibrio angustum S14]
 gi|89049886|gb|EAR55427.1| integration host factor alpha subunit [Photobacterium sp. SKA34]
 gi|90439218|gb|EAS64400.1| integration host factor alpha subunit [Vibrio angustum S14]
          Length = 98

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 53/91 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ +  GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAENLFENVGLSKRDAKDTVEVFFEEVRKALENGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +++ I  RRVV F+    LK R+ 
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVE 92


>gi|317491936|ref|ZP_07950370.1| integration host protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|322833533|ref|YP_004213560.1| integration host factor, subunit alpha [Rahnella sp. Y9602]
 gi|316920057|gb|EFV41382.1| integration host protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|321168734|gb|ADW74433.1| integration host factor, alpha subunit [Rahnella sp. Y9602]
          Length = 98

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 54/95 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEHLFEKLGLSKRDAKDLVEIFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +++ I  RRVV F+    LK R+ +   
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENATP 96


>gi|57339942|gb|AAW49958.1| hypothetical protein FTT0627 [synthetic construct]
          Length = 125

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 51/90 (56%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +S+LV +I+KE  ++++ ++  +      +  +   G+++ +  F TF VK++  R G
Sbjct: 27  MNKSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSPREG 86

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN +T + +KI   +V  FKAS  LK  + 
Sbjct: 87  RNPKTGETIKIPASKVPSFKASKGLKDAVK 116


>gi|323492062|ref|ZP_08097224.1| nucleoid DNA-binding protein [Vibrio brasiliensis LMG 20546]
 gi|323313623|gb|EGA66725.1| nucleoid DNA-binding protein [Vibrio brasiliensis LMG 20546]
          Length = 90

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +      + D+   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLEGVTDALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  E++I    V  F A   LK  + 
Sbjct: 61 RNPKTGAEIQIAAANVPAFVAGKALKDSVK 90


>gi|307942066|ref|ZP_07657417.1| DNA-binding protein HRL18 [Roseibium sp. TrichSKD4]
 gi|307774352|gb|EFO33562.1| DNA-binding protein HRL18 [Roseibium sp. TrichSKD4]
          Length = 91

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++ GL++  +   V   F  + ++   G+ ++I  F  F V  + +  G
Sbjct: 1  MNKNDLIAAVAEKTGLTKAQAGEAVDATFEAVTETLKAGDEVRIIGFGNFSVSARAATEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + ++I   +   FKA   LK  + 
Sbjct: 61 RNPRTGETIQIPASKTPKFKAGKGLKDAVN 90


>gi|114319923|ref|YP_741606.1| integration host factor subunit alpha [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|122312214|sp|Q0AAM1|IHFA_ALHEH RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|114226317|gb|ABI56116.1| integration host factor, alpha subunit [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 101

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 55/100 (55%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++D+ + + +E GL+++++   V + F EI  +   G  +K+S F  F ++ K  R 
Sbjct: 2   ALTKADMAERLFEEVGLNKREAKELVESFFEEIRQALEDGVPVKLSGFGNFDLRDKNERP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           GRN +T +E+ I  RRVV F+    LK R+       K +
Sbjct: 62  GRNPKTGEEIPISARRVVTFRPGQKLKSRVEAYAGNVKQS 101


>gi|197335248|ref|YP_002155560.1| DNA-binding protein HU-beta [Vibrio fischeri MJ11]
 gi|197316738|gb|ACH66185.1| DNA-binding protein HU-beta [Vibrio fischeri MJ11]
          Length = 90

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 47/88 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S LV  I++   +S+  + R +  L   + ++   G+ + +  F +F V+++ +R G
Sbjct: 1  MNKSQLVDQIAESADISKAAAGRALDALVETVTETLKSGDQVTLVGFGSFVVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN +T + ++I   +V  FKA   LK  
Sbjct: 61 RNPKTGEAIEISAAKVPAFKAGKALKDA 88


>gi|119472475|ref|ZP_01614574.1| integration host factor (IHF), alpha subunit, DNA-bending
          protein, DNA replication [Alteromonadales bacterium
          TW-7]
 gi|332534256|ref|ZP_08410101.1| integration host factor alpha subunit [Pseudoalteromonas
          haloplanktis ANT/505]
 gi|119444912|gb|EAW26211.1| integration host factor (IHF), alpha subunit, DNA-bending
          protein, DNA replication [Alteromonadales bacterium
          TW-7]
 gi|332036336|gb|EGI72807.1| integration host factor alpha subunit [Pseudoalteromonas
          haloplanktis ANT/505]
          Length = 99

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 54/91 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + + ++ G+++KD+   V   F EI  +  +GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADIAEHLFEKLGINKKDAKDLVEAFFEEIRSALEKGEQVKLSGFGNFDLRDKKERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +++ I  RRVV F+    LK R+ 
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRVE 92


>gi|83647266|ref|YP_435701.1| integration host factor subunit alpha [Hahella chejuensis KCTC
          2396]
 gi|123753568|sp|Q2SDJ8|IHFA_HAHCH RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|83635309|gb|ABC31276.1| integration host factor, alpha subunit [Hahella chejuensis KCTC
          2396]
          Length = 100

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 54/91 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + + +E GL+++++   V   F+E+ D+    E +K+S F  F ++ K  R 
Sbjct: 3  ALTKADMAERLYQEVGLNKREAKEMVEAFFDEVRDALSHNEQVKLSGFGNFDLRDKKQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  RRVV F+    LK ++ 
Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKAKVE 93


>gi|298291651|ref|YP_003693590.1| integration host factor, subunit alpha [Starkeya novella DSM 506]
 gi|296928162|gb|ADH88971.1| integration host factor, alpha subunit [Starkeya novella DSM 506]
          Length = 101

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/97 (49%), Positives = 69/97 (71%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +TITR+DL +++ +  GLSR +S   V T+ +EI D   RGE +K+SSF +F V+QKG 
Sbjct: 3  GRTITRADLCEAVYQRVGLSRTESAALVETVLSEIADCVARGETVKLSSFGSFVVRQKGE 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          R+GRN +T +EV I PRRV+VFK S+ILK++I  +  
Sbjct: 63 RIGRNPKTGEEVPIAPRRVMVFKPSNILKQQINGETP 99


>gi|50121344|ref|YP_050511.1| integration host factor subunit alpha [Pectobacterium
          atrosepticum SCRI1043]
 gi|227111539|ref|ZP_03825195.1| integration host factor subunit alpha [Pectobacterium carotovorum
          subsp. brasiliensis PBR1692]
 gi|227327039|ref|ZP_03831063.1| integration host factor subunit alpha [Pectobacterium carotovorum
          subsp. carotovorum WPP14]
 gi|253688281|ref|YP_003017471.1| integration host factor, alpha subunit [Pectobacterium
          carotovorum subsp. carotovorum PC1]
 gi|81693249|sp|Q6D4H4|IHFA_ERWCT RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|259491532|sp|C6DFZ2|IHFA_PECCP RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|49611870|emb|CAG75319.1| integration host factor alpha-subunit [Pectobacterium
          atrosepticum SCRI1043]
 gi|251754859|gb|ACT12935.1| integration host factor, alpha subunit [Pectobacterium
          carotovorum subsp. carotovorum PC1]
          Length = 98

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 54/93 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +++ I  RRVV F+    LK R+ + 
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94


>gi|30248955|ref|NP_841025.1| integration host factor subunit alpha [Nitrosomonas europaea ATCC
           19718]
 gi|81722208|sp|Q82VV7|IHFA_NITEU RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|30138572|emb|CAD84863.1| Bacterial histone-like DNA-binding protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 102

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 54/97 (55%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T+++L   + +  GL+++++   V   + E+  +   G+ +K+S F  F ++ K  R 
Sbjct: 2   ALTKAELTDLLFENIGLNKREAKEIVECFYEEMRAALQNGDGVKLSGFGNFQLRTKPQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T +E+ I  RRVV F AS  LK  +  + RG 
Sbjct: 62  GRNPKTGEEIPISARRVVTFHASQKLKSMVEANYRGE 98


>gi|127513433|ref|YP_001094630.1| histone family protein DNA-binding protein [Shewanella loihica
          PV-4]
 gi|126638728|gb|ABO24371.1| histone family protein DNA-binding protein [Shewanella loihica
          PV-4]
          Length = 90

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + +  + + D    G+ I +  F TF V+Q+  R G
Sbjct: 1  MNKSELIEKIASGADISKAAAGRALDSFISAVTDGLKDGDKISLVGFGTFEVRQRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    +  FKA   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANIPAFKAGKALKDAVN 90


>gi|22124937|ref|NP_668360.1| transcriptional regulator HU subunit beta [Yersinia pestis KIM
          10]
 gi|45440626|ref|NP_992165.1| transcriptional regulator HU subunit beta [Yersinia pestis biovar
          Microtus str. 91001]
 gi|51595312|ref|YP_069503.1| transcriptional regulator HU subunit beta [Yersinia
          pseudotuberculosis IP 32953]
 gi|108808640|ref|YP_652556.1| transcriptional regulator HU subunit beta [Yersinia pestis
          Antiqua]
 gi|108811101|ref|YP_646868.1| transcriptional regulator HU subunit beta [Yersinia pestis
          Nepal516]
 gi|145600049|ref|YP_001164125.1| transcriptional regulator HU subunit beta [Yersinia pestis
          Pestoides F]
 gi|149365000|ref|ZP_01887035.1| DNA-binding protein HU-beta [Yersinia pestis CA88-4125]
 gi|153946890|ref|YP_001402049.1| transcriptional regulator HU subunit beta [Yersinia
          pseudotuberculosis IP 31758]
 gi|162421829|ref|YP_001607417.1| transcriptional regulator HU subunit beta [Yersinia pestis
          Angola]
 gi|165926604|ref|ZP_02222436.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis
          str. F1991016]
 gi|165935858|ref|ZP_02224428.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis
          str. IP275]
 gi|166011019|ref|ZP_02231917.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166212951|ref|ZP_02238986.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|167398669|ref|ZP_02304193.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str.
          UG05-0454]
 gi|167421618|ref|ZP_02313371.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis
          str. MG05-1020]
 gi|167423381|ref|ZP_02315134.1| DNA-binding protein HU-beta [Yersinia pestis biovar Mediaevalis
          str. K1973002]
 gi|170025448|ref|YP_001721953.1| transcriptional regulator HU subunit beta [Yersinia
          pseudotuberculosis YPIII]
 gi|186894329|ref|YP_001871441.1| transcriptional regulator HU subunit beta [Yersinia
          pseudotuberculosis PB1/+]
 gi|218930184|ref|YP_002348059.1| transcriptional regulator HU subunit beta [Yersinia pestis CO92]
 gi|229838758|ref|ZP_04458917.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
          pestis biovar Orientalis str. PEXU2]
 gi|229896088|ref|ZP_04511258.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
          pestis Pestoides A]
 gi|229899326|ref|ZP_04514469.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
          pestis biovar Orientalis str. India 195]
 gi|229901330|ref|ZP_04516452.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
          pestis Nepal516]
 gi|270489516|ref|ZP_06206590.1| DNA-binding protein HU [Yersinia pestis KIM D27]
 gi|21957776|gb|AAM84611.1|AE013706_6 DNA-binding protein HU-beta, NS1 (HU-1) [Yersinia pestis KIM 10]
 gi|45435483|gb|AAS61042.1| DNA-binding protein HU-beta [Yersinia pestis biovar Microtus str.
          91001]
 gi|51588594|emb|CAH20202.1| DNA-binding protein HU-beta, NS1 (HU-1) [Yersinia
          pseudotuberculosis IP 32953]
 gi|108774749|gb|ABG17268.1| bacterial nucleoid protein HU beta subunit [Yersinia pestis
          Nepal516]
 gi|108780553|gb|ABG14611.1| bacterial nucleoid protein HU beta subunit [Yersinia pestis
          Antiqua]
 gi|115348795|emb|CAL21749.1| DNA-binding protein HU-beta [Yersinia pestis CO92]
 gi|145211745|gb|ABP41152.1| bacterial nucleoid protein HU beta subunit [Yersinia pestis
          Pestoides F]
 gi|149291413|gb|EDM41487.1| DNA-binding protein HU-beta [Yersinia pestis CA88-4125]
 gi|152958385|gb|ABS45846.1| DNA-binding protein HU-beta [Yersinia pseudotuberculosis IP
          31758]
 gi|162354644|gb|ABX88592.1| DNA-binding protein HU-beta [Yersinia pestis Angola]
 gi|165916003|gb|EDR34610.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis
          str. IP275]
 gi|165921532|gb|EDR38729.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis
          str. F1991016]
 gi|165990019|gb|EDR42320.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166205738|gb|EDR50218.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|166960537|gb|EDR56558.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis
          str. MG05-1020]
 gi|167051173|gb|EDR62581.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str.
          UG05-0454]
 gi|167057551|gb|EDR67297.1| DNA-binding protein HU-beta [Yersinia pestis biovar Mediaevalis
          str. K1973002]
 gi|169751982|gb|ACA69500.1| histone family protein DNA-binding protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186697355|gb|ACC87984.1| histone family protein DNA-binding protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|229681259|gb|EEO77353.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
          pestis Nepal516]
 gi|229687728|gb|EEO79801.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
          pestis biovar Orientalis str. India 195]
 gi|229695124|gb|EEO85171.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
          pestis biovar Orientalis str. PEXU2]
 gi|229701011|gb|EEO89040.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
          pestis Pestoides A]
 gi|270338020|gb|EFA48797.1| DNA-binding protein HU [Yersinia pestis KIM D27]
 gi|320016340|gb|ADV99911.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
          pestis biovar Medievalis str. Harbin 35]
          Length = 90

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + +S   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDAIITSVTESLKEGDDVALVGFGTFAVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F+A   LK  + 
Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKGLKDAVN 90


>gi|295424943|ref|ZP_06817655.1| DNA-binding protein HU [Lactobacillus amylolyticus DSM 11664]
 gi|295065382|gb|EFG56278.1| DNA-binding protein HU [Lactobacillus amylolyticus DSM 11664]
          Length = 94

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 54/92 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ +++LVK I+++  + +KD+   + ++ + I D  V+G  +++  F TF V+ + +R 
Sbjct: 3  SVNKAELVKEIAEKTEMKKKDAEAVLESVISTIQDELVKGNKVQLIGFGTFEVRHRAARK 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN QT +E+ I   +V  FK    LK+ +  
Sbjct: 63 GRNPQTGKEITIPATQVPAFKPGKALKESVNK 94


>gi|319405545|emb|CBI79164.1| DNA-binding protein [Bartonella sp. AR 15-3]
          Length = 92

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV SI+++ G+S+  +   V      + ++   G  +++  F +F V  + +  G
Sbjct: 1  MNKSELVNSIAEKAGISKAQAGSSVDAFIASVTEALASGGDVRLPGFGSFEVSHRAATKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T  E+ I  R V  F A   LK+ + +
Sbjct: 61 RNPSTGAEITIPARSVPKFSAGKSLKEAVNN 91


>gi|163752059|ref|ZP_02159267.1| integration host factor, alpha subunit [Shewanella benthica KT99]
 gi|161328059|gb|EDP99229.1| integration host factor, alpha subunit [Shewanella benthica KT99]
          Length = 98

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 54/97 (55%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ + + +  G++++ +   V T F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRQALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T +++ I  RRVV F+    LK R+ +    R
Sbjct: 62  GRNPKTGEDIPISARRVVTFRPGQKLKSRVEEANSNR 98


>gi|295094507|emb|CBK83598.1| Bacterial nucleoid DNA-binding protein [Coprococcus sp. ART55/1]
          Length = 90

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+++  LS+KD+   +    + + D   +GE I++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAIAEKTELSKKDAEAALKAFTDVVADELKKGEKIQLVGFGTFEVSERPAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I   +   FKA   LK  I 
Sbjct: 61 RNPRTGETMTIAASKAPKFKAGKALKDSIN 90


>gi|254283717|ref|ZP_04958685.1| DNA-binding protein HU [gamma proteobacterium NOR51-B]
 gi|219679920|gb|EED36269.1| DNA-binding protein HU [gamma proteobacterium NOR51-B]
          Length = 90

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+++  LS+  + R +    + + ++  + + + +  F TF VK + +R G
Sbjct: 1  MNKNDLIDAIAEDADLSKASAARALDATLSAVTEALSKQDTVSLVGFGTFSVKHRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN ++ + ++I       FK    LK  + 
Sbjct: 61 RNPRSGETIQIKASNNPSFKPGKALKDAVN 90


>gi|149191095|ref|ZP_01869355.1| integration host factor subunit alpha [Vibrio shilonii AK1]
 gi|148835123|gb|EDL52100.1| integration host factor subunit alpha [Vibrio shilonii AK1]
          Length = 97

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 54/92 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ ++ G S++D+   V   F EI  S   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAENLFEKLGFSKRDAKETVEVFFEEIRKSLESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVEN 93


>gi|157374683|ref|YP_001473283.1| histone family protein DNA-binding protein [Shewanella sediminis
          HAW-EB3]
 gi|157317057|gb|ABV36155.1| histone family protein DNA-binding protein [Shewanella sediminis
          HAW-EB3]
          Length = 90

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + +    + D    G+ I +  F TF V+Q+  R G
Sbjct: 1  MNKSELIEKIASGADISKAAAGRALDSFIGAVTDGLKEGDKISLVGFGTFEVRQRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    +  FKA   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANIPAFKAGKALKDAVN 90


>gi|59711406|ref|YP_204182.1| HU, DNA-binding transcriptional regulator, beta subunit [Vibrio
          fischeri ES114]
 gi|59479507|gb|AAW85294.1| HU, DNA-binding transcriptional regulator, beta subunit [Vibrio
          fischeri ES114]
          Length = 98

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 48/91 (52%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            T+ +S LV  I++   +S+  + R +  L   + ++   G+ + +  F +F V+++ +
Sbjct: 6  GNTVNKSQLVDQIAESADISKAAAGRALDALVETVTETLKSGDQVTLVGFGSFVVRERAA 65

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          R GRN +T + ++I   +V  FKA   LK  
Sbjct: 66 RTGRNPKTGEAIEISAAKVPAFKAGKALKDA 96


>gi|294139097|ref|YP_003555075.1| HU family DNA-binding protein [Shewanella violacea DSS12]
 gi|293325566|dbj|BAJ00297.1| DNA-binding protein, HU family [Shewanella violacea DSS12]
          Length = 91

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  I++   L++ ++ R + +    I ++   G+ I I  F +F    + +R G
Sbjct: 1  MNKTELVAKIAENADLTKAEAARALKSFEETITETLKSGDKISIVGFGSFETTNRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT QE++I    V  FKA   LK  +  
Sbjct: 61 RNPQTGQEIQIPAATVPKFKAGKTLKDSVNQ 91


>gi|40062781|gb|AAR37675.1| DNA-binding protein HU [uncultured marine bacterium 439]
          Length = 90

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDLV +I+   GL++ D+ R ++     I  +   G+ + I+ F +F V+ + +R G
Sbjct: 1  MNKSDLVAAIADGSGLTKADAARALSATTGAISGALASGDKVSITGFGSFLVRSRAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   + I   +V  FKA  +LK+ + 
Sbjct: 61 RNPQTGATIHISASKVPAFKAGKLLKESVN 90


>gi|21231892|ref|NP_637809.1| integration host factor subunit alpha [Xanthomonas campestris pv.
          campestris str. ATCC 33913]
 gi|21243319|ref|NP_642901.1| integration host factor subunit alpha [Xanthomonas axonopodis pv.
          citri str. 306]
 gi|58582804|ref|YP_201820.1| integration host factor subunit alpha [Xanthomonas oryzae pv.
          oryzae KACC10331]
 gi|66767980|ref|YP_242742.1| integration host factor subunit alpha [Xanthomonas campestris pv.
          campestris str. 8004]
 gi|78048345|ref|YP_364520.1| integration host factor subunit alpha [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|84624678|ref|YP_452050.1| integration host factor subunit alpha [Xanthomonas oryzae pv.
          oryzae MAFF 311018]
 gi|166711594|ref|ZP_02242801.1| integration host factor subunit alpha [Xanthomonas oryzae pv.
          oryzicola BLS256]
 gi|188991106|ref|YP_001903116.1| integration host factor subunit alpha [Xanthomonas campestris pv.
          campestris str. B100]
 gi|289661755|ref|ZP_06483336.1| integration host factor subunit alpha [Xanthomonas campestris pv.
          vasculorum NCPPB702]
 gi|289668707|ref|ZP_06489782.1| integration host factor subunit alpha [Xanthomonas campestris pv.
          musacearum NCPPB4381]
 gi|325919872|ref|ZP_08181862.1| integration host factor, alpha subunit [Xanthomonas gardneri ATCC
          19865]
 gi|325927163|ref|ZP_08188426.1| integration host factor, alpha subunit [Xanthomonas perforans
          91-118]
 gi|59799768|sp|P0A0T9|IHFA_XANCP RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|59799769|sp|P0A0U0|IHFA_XANAC RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|75508131|sp|Q5GXY6|IHFA_XANOR RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|81306043|sp|Q4UW51|IHFA_XANC8 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123730273|sp|Q3BRU3|IHFA_XANC5 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123739069|sp|Q2P101|IHFA_XANOM RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709759|sp|B0RRH5|IHFA_XANCB RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|1172091|gb|AAA86369.1| GumA [Xanthomonas campestris]
 gi|21108861|gb|AAM37437.1| integration host factor alpha subunit [Xanthomonas axonopodis pv.
          citri str. 306]
 gi|21113616|gb|AAM41733.1| integration host factor alpha chain [Xanthomonas campestris pv.
          campestris str. ATCC 33913]
 gi|58427398|gb|AAW76435.1| integration host factor alpha subunit [Xanthomonas oryzae pv.
          oryzae KACC10331]
 gi|66573312|gb|AAY48722.1| integration host factor alpha chain [Xanthomonas campestris pv.
          campestris str. 8004]
 gi|78036775|emb|CAJ24468.1| Integration host factor alpha subunit [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|84368618|dbj|BAE69776.1| Integration host factor alpha-subunit [Xanthomonas oryzae pv.
          oryzae MAFF 311018]
 gi|167732866|emb|CAP51060.1| integration host factor alpha chain [Xanthomonas campestris pv.
          campestris]
 gi|325542476|gb|EGD13955.1| integration host factor, alpha subunit [Xanthomonas perforans
          91-118]
 gi|325549656|gb|EGD20520.1| integration host factor, alpha subunit [Xanthomonas gardneri ATCC
          19865]
          Length = 99

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 55/91 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  E GL+++++  FV   F+ + D+  +G  +K+S F  F +++K  R 
Sbjct: 2  ALTKAEMAERLFDEVGLNKREAKEFVDAFFDVLRDALEQGRQVKLSGFGNFDLRRKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  R VV F+    LK+R+ 
Sbjct: 62 GRNPKTGEEIPISARTVVTFRPGQKLKERVE 92


>gi|123443339|ref|YP_001007313.1| transcriptional regulator HU subunit beta [Yersinia
          enterocolitica subsp. enterocolitica 8081]
 gi|238759259|ref|ZP_04620426.1| DNA-binding protein HU [Yersinia aldovae ATCC 35236]
 gi|238764857|ref|ZP_04625798.1| DNA-binding protein HU [Yersinia kristensenii ATCC 33638]
 gi|238783606|ref|ZP_04627627.1| DNA-binding protein HU [Yersinia bercovieri ATCC 43970]
 gi|238788011|ref|ZP_04631807.1| DNA-binding protein HU [Yersinia frederiksenii ATCC 33641]
 gi|238791434|ref|ZP_04635072.1| DNA-binding protein HU [Yersinia intermedia ATCC 29909]
 gi|238795539|ref|ZP_04639054.1| DNA-binding protein HU [Yersinia mollaretii ATCC 43969]
 gi|332160752|ref|YP_004297329.1| transcriptional regulator HU subunit beta [Yersinia
          enterocolitica subsp. palearctica 105.5R(r)]
 gi|122090300|emb|CAL13166.1| DNA-binding protein HU-beta [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|238696964|gb|EEP89740.1| DNA-binding protein HU [Yersinia kristensenii ATCC 33638]
 gi|238702546|gb|EEP95096.1| DNA-binding protein HU [Yersinia aldovae ATCC 35236]
 gi|238715484|gb|EEQ07475.1| DNA-binding protein HU [Yersinia bercovieri ATCC 43970]
 gi|238720658|gb|EEQ12459.1| DNA-binding protein HU [Yersinia mollaretii ATCC 43969]
 gi|238723959|gb|EEQ15603.1| DNA-binding protein HU [Yersinia frederiksenii ATCC 33641]
 gi|238729050|gb|EEQ20566.1| DNA-binding protein HU [Yersinia intermedia ATCC 29909]
 gi|318604632|emb|CBY26130.1| DNA-binding protein HU-beta [Yersinia enterocolitica subsp.
          palearctica Y11]
 gi|325664982|gb|ADZ41626.1| transcriptional regulator HU subunit beta [Yersinia
          enterocolitica subsp. palearctica 105.5R(r)]
 gi|330859946|emb|CBX70275.1| DNA-binding protein HU-beta [Yersinia enterocolitica W22703]
          Length = 90

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + +S   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F+A   LK  + 
Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKGLKDAVN 90


>gi|241896283|ref|ZP_04783579.1| DNA-binding protein HU [Weissella paramesenteroides ATCC 33313]
 gi|241870524|gb|EER74275.1| DNA-binding protein HU [Weissella paramesenteroides ATCC 33313]
          Length = 91

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + +LV  ++   GL++KD+T  V  +F  I ++  +GE +++  F  F V+ + +R GR
Sbjct: 3  NKQELVTDVATATGLTKKDATAAVDAVFASIQETLAKGEKVQLIGFGNFEVRSRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E++I   ++  FK    LK  I 
Sbjct: 63 NPQTGEEIEIAASKIPAFKPGKALKDAIK 91


>gi|221068236|ref|ZP_03544341.1| integration host factor, beta subunit [Comamonas testosteroni
          KF-1]
 gi|220713259|gb|EED68627.1| integration host factor, beta subunit [Comamonas testosteroni
          KF-1]
          Length = 107

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 59/92 (64%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDLV+ ++ +FG L+++D+ + V T+ + + D+ VRG  I+I  F +F +  +  R+
Sbjct: 1  MTRSDLVEELAAQFGQLNQRDAEQAVKTILDAVSDALVRGHRIEIRGFGSFAINHRQPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN ++ + V++  +RV  FK    L++ + +
Sbjct: 61 GRNPRSGESVQVPSKRVPHFKPGKALREAVDN 92


>gi|163793185|ref|ZP_02187161.1| Histone-like DNA-binding protein [alpha proteobacterium BAL199]
 gi|159181831|gb|EDP66343.1| Histone-like DNA-binding protein [alpha proteobacterium BAL199]
          Length = 90

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++   GLS+ DS + V  +F+EI     +G  +++  F TF V  + +  G
Sbjct: 1  MNKNELVAAVADSTGLSKADSGKAVDAVFDEITGQLKKGGDVRLVGFGTFSVASRAASEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +++ I   +   FK    LK  + 
Sbjct: 61 RNPRTGEKIAIPASKQPKFKPGKGLKDSVN 90


>gi|24373363|ref|NP_717406.1| HU family DNA-binding protein [Shewanella oneidensis MR-1]
 gi|113970827|ref|YP_734620.1| histone family protein DNA-binding protein [Shewanella sp. MR-4]
 gi|114048052|ref|YP_738602.1| histone family protein DNA-binding protein [Shewanella sp. MR-7]
 gi|120599411|ref|YP_963985.1| histone family protein DNA-binding protein [Shewanella sp.
          W3-18-1]
 gi|126173841|ref|YP_001049990.1| histone family protein DNA-binding protein [Shewanella baltica
          OS155]
 gi|146292593|ref|YP_001183017.1| histone family protein DNA-binding protein [Shewanella
          putrefaciens CN-32]
 gi|153000125|ref|YP_001365806.1| histone family protein DNA-binding protein [Shewanella baltica
          OS185]
 gi|160874747|ref|YP_001554063.1| histone family protein DNA-binding protein [Shewanella baltica
          OS195]
 gi|217973907|ref|YP_002358658.1| histone family protein DNA-binding protein [Shewanella baltica
          OS223]
 gi|304409714|ref|ZP_07391334.1| histone family protein DNA-binding protein [Shewanella baltica
          OS183]
 gi|307304070|ref|ZP_07583823.1| histone family protein DNA-binding protein [Shewanella baltica
          BA175]
 gi|24347626|gb|AAN54850.1|AE015624_3 DNA-binding protein, HU family [Shewanella oneidensis MR-1]
 gi|113885511|gb|ABI39563.1| histone family protein DNA-binding protein [Shewanella sp. MR-4]
 gi|113889494|gb|ABI43545.1| histone family protein DNA-binding protein [Shewanella sp. MR-7]
 gi|120559504|gb|ABM25431.1| histone family protein DNA-binding protein [Shewanella sp.
          W3-18-1]
 gi|125997046|gb|ABN61121.1| histone family protein DNA-binding protein [Shewanella baltica
          OS155]
 gi|145564283|gb|ABP75218.1| histone family protein DNA-binding protein [Shewanella
          putrefaciens CN-32]
 gi|151364743|gb|ABS07743.1| histone family protein DNA-binding protein [Shewanella baltica
          OS185]
 gi|160860269|gb|ABX48803.1| histone family protein DNA-binding protein [Shewanella baltica
          OS195]
 gi|217499042|gb|ACK47235.1| histone family protein DNA-binding protein [Shewanella baltica
          OS223]
 gi|304352232|gb|EFM16630.1| histone family protein DNA-binding protein [Shewanella baltica
          OS183]
 gi|306912968|gb|EFN43391.1| histone family protein DNA-binding protein [Shewanella baltica
          BA175]
 gi|315266989|gb|ADT93842.1| histone family protein DNA-binding protein [Shewanella baltica
          OS678]
 gi|319425895|gb|ADV53969.1| histone family protein DNA-binding protein [Shewanella
          putrefaciens 200]
          Length = 90

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + +    + +    G+ I +  F TF V+++  R G
Sbjct: 1  MNKSELIEKIASGADISKAAAGRALDSFIAAVTEGLKEGDKISLVGFGTFEVRERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI   ++  FKA   LK  + 
Sbjct: 61 RNPQTGEEIKIAAAKIPAFKAGKALKDAVN 90


>gi|228918447|ref|ZP_04081894.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis
          BGSC 4CC1]
 gi|228841197|gb|EEM86392.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis
          BGSC 4CC1]
          Length = 93

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 54/92 (58%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +++L K I+++  L++KD+      L + I ++   GE ++I  F TF V++K +R
Sbjct: 2  QKMNKTELTKVIAEKAELTQKDAAAATQALLDTITNALANGEKVQILGFGTFEVREKSAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E++I   +   FKA   LK+ + 
Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93


>gi|150395249|ref|YP_001325716.1| integration host factor subunit beta [Sinorhizobium medicae WSM419]
 gi|166975894|sp|A6U5F1|IHFB_SINMW RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|150026764|gb|ABR58881.1| integration host factor, beta subunit [Sinorhizobium medicae
           WSM419]
          Length = 103

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 1/103 (0%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV+ ++     L  +D    V  + +EI D+   G  +++  F  F VK + SR 
Sbjct: 1   MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN +T   V ++ + V  FK    L++R+   M G    +DD
Sbjct: 61  GRNPRTGDSVFVEEKWVPFFKTGKELRERLNPGMNGNDNGEDD 103


>gi|85058652|ref|YP_454354.1| transcriptional regulator HU subunit beta [Sodalis glossinidius
          str. 'morsitans']
 gi|84779172|dbj|BAE73949.1| DNA-binding protein HU-beta [Sodalis glossinidius str.
          'morsitans']
          Length = 90

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + +S  +G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIGSVTESLQQGDDVALVGFGTFTVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F+A   LK  + 
Sbjct: 61 RNPQTGKEITIAAAKVPGFRAGKGLKDAVN 90


>gi|209964552|ref|YP_002297467.1| DNA-binding protein HupA [Rhodospirillum centenum SW]
 gi|209958018|gb|ACI98654.1| DNA-binding protein HupA [Rhodospirillum centenum SW]
          Length = 90

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV ++++  GLS+ D+ + V  +F+ I  +  +G+ +++  F TF V ++ +  G
Sbjct: 1  MNKNDLVAAVAEAAGLSKADANKAVDAVFDGITSALTKGDEVRLVGFGTFGVAERAASEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +++ I   +   FKA   LK  + 
Sbjct: 61 RNPRTGEKISIPASKQPKFKAGKGLKDALN 90


>gi|315126233|ref|YP_004068236.1| integration host factor (IHF), alpha subunit, DNA-bending
          protein, DNA replication [Pseudoalteromonas sp. SM9913]
 gi|315014747|gb|ADT68085.1| integration host factor (IHF), alpha subunit, DNA-bending
          protein, DNA replication [Pseudoalteromonas sp. SM9913]
          Length = 98

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 54/91 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + + ++ G+++KD+   V   F EI  +  +GE IK+S F  F ++ K  R 
Sbjct: 2  ALTKADIAEHLFEKLGINKKDAKDLVEAFFEEIRSALEKGEQIKLSGFGNFDLRDKKERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +++ I  RRVV F+    LK R+ 
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRVE 92


>gi|269468801|gb|EEZ80405.1| DNA-binding protein HU [uncultured SUP05 cluster bacterium]
          Length = 90

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+   GLS+ D+ R +      I  +  +G+ ++I+ F +F V+ + +R G
Sbjct: 1  MNKSELIDAIASTSGLSKADAGRALNATTGAITSAMAKGDGVQITGFGSFVVRDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   ++I   +V  FKA   LK+ + 
Sbjct: 61 RNPQTGATIQIKASKVAAFKAGKALKEAVN 90


>gi|268593005|ref|ZP_06127226.1| DNA-binding protein HU [Providencia rettgeri DSM 1131]
 gi|291311478|gb|EFE51931.1| DNA-binding protein HU [Providencia rettgeri DSM 1131]
          Length = 90

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++   L++  +   + +  N I ++  +GE +++  F TF V  + +R G
Sbjct: 1  MNKTELVDAIAESADLTKVQAKAALESTLNAISETLKKGEQVQLVGFGTFKVSHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I    V  F A   LK+ + 
Sbjct: 61 RNPQTKAEIQIPATTVPAFSAGKALKEAVK 90


>gi|78485524|ref|YP_391449.1| histone-like DNA-binding protein [Thiomicrospira crunogena XCL-2]
 gi|78363810|gb|ABB41775.1| histone-like DNA-binding protein [Thiomicrospira crunogena XCL-2]
          Length = 90

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++E GL++ D+ + +    + +  +   G+++ I  F TF V ++ +R G
Sbjct: 1  MNKTELVSAIAEEAGLTKADAAKALEATVSTVTKALSSGDSVAIIGFGTFKVGERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I   +V  F A   LK+ + 
Sbjct: 61 RNPQTGAEMQIPAAKVPKFSAGKALKEAVN 90


>gi|320156966|ref|YP_004189345.1| DNA-binding protein HU-beta [Vibrio vulnificus MO6-24/O]
 gi|319932278|gb|ADV87142.1| DNA-binding protein HU-beta [Vibrio vulnificus MO6-24/O]
          Length = 90

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 46/88 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+SI+    +S+  + R +      +  +   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVESIAANADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN +T +E++I   +V  FKA   LK  
Sbjct: 61 RNPKTGEEIQIAEAKVPSFKAGKALKDA 88


>gi|126729742|ref|ZP_01745555.1| integration host factor, alpha subunit [Sagittula stellata E-37]
 gi|126709861|gb|EBA08914.1| integration host factor, alpha subunit [Sagittula stellata E-37]
          Length = 100

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 64/96 (66%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++ +E GLSR +S   V  +   + D+ V GE +KISSF TF V++K +R
Sbjct: 4  KTLTRMDLSEAVFREVGLSRNESAELVEAVLQHMSDALVEGEQVKISSFGTFSVREKAAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          VGRN +T +EV I PRRV+ F+ S ++K R+    +
Sbjct: 64 VGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVAAGNK 99


>gi|117617689|ref|YP_858134.1| DNA-binding protein HU-alpha [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
 gi|145300512|ref|YP_001143353.1| DNA-binding protein HU alpha [Aeromonas salmonicida subsp.
          salmonicida A449]
 gi|7288222|gb|AAF45030.1|AF146598_1 putative DNA-binding protein HU [Aeromonas hydrophila]
 gi|42768703|gb|AAS45567.1| putative DNA-binding protein HU [Aeromonas hydrophila]
 gi|117559096|gb|ABK36044.1| DNA-binding protein HU-alpha [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
 gi|142853284|gb|ABO91605.1| DNA-binding protein HU alpha [Aeromonas salmonicida subsp.
          salmonicida A449]
          Length = 98

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 46/93 (49%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
             + ++ LV +I+ +  LS+  +   +  + N I  S   G+A+++  F TF V  +  
Sbjct: 6  GNVMNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVNHRAG 65

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          R GRN QT +E++I    V  F A   LK  + 
Sbjct: 66 RTGRNPQTGKEIQIAAANVPSFVAGKALKDAVK 98


>gi|189345750|ref|YP_001942279.1| histone family protein DNA-binding protein [Chlorobium limicola
          DSM 245]
 gi|189339897|gb|ACD89300.1| histone family protein DNA-binding protein [Chlorobium limicola
          DSM 245]
          Length = 91

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++++LV+ I+ + GL++ D+ R V    N +  S   G+ + +  F TF    +  R G
Sbjct: 1  MSKAELVEKIASQAGLTKADAERAVNAFINVVTASLKDGDDVTLVGFGTFTTGDRAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I  ++VV FK    LK  +
Sbjct: 61 RNPQTGETITIAAKKVVKFKPGKALKDEV 89


>gi|329895713|ref|ZP_08271117.1| Integration host factor alpha subunit [gamma proteobacterium
          IMCC3088]
 gi|328922189|gb|EGG29544.1| Integration host factor alpha subunit [gamma proteobacterium
          IMCC3088]
          Length = 99

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 53/92 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+SD+   + +E GL+++++   V   F EI  S    E +K+S F  F ++ KG R 
Sbjct: 3  ALTKSDMADMLFEELGLNKREAKEIVEMFFEEIRASLESNEQVKLSGFGNFELRDKGERP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +E+ I PRRVV FK    LK R+  
Sbjct: 63 GRNPKTGEEIPISPRRVVTFKPGQKLKARVEK 94


>gi|253990888|ref|YP_003042244.1| DNA-binding protein HU-beta [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253782338|emb|CAQ85502.1| DNA-binding protein HU-beta (NS1) (HU-1) [Photorhabdus
          asymbiotica]
          Length = 99

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 48/94 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R V    + +  +   G+ + +  F TF V+++ +R G
Sbjct: 6  VNKSQLIDKIAADSNISKAAAGRVVDAFISSVTGALKDGDDVALVGFGTFAVRERSARTG 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN QT +E+KI   +V  F+    LK  +  +  
Sbjct: 66 RNPQTGKELKIAAAKVPAFRPGKSLKDAVNSNTN 99


>gi|149186802|ref|ZP_01865112.1| histone-like protein [Erythrobacter sp. SD-21]
 gi|148829469|gb|EDL47910.1| histone-like protein [Erythrobacter sp. SD-21]
          Length = 90

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ ++++  GLS+ D++  V  +F+ I  S  +G+ +++  F TF V ++ +  G
Sbjct: 1  MNKNDLIGAVAEASGLSKSDASSAVEGVFDAITKSLSKGDEVRLVGFGTFSVAKRKASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I       FKA   LK  + 
Sbjct: 61 RNPRTGEPMNIPASNQPKFKAGKGLKDAVN 90


>gi|322381185|ref|ZP_08055188.1| non-specific DNA-binding protein Hbsu/signal recognition
          particle-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
 gi|321154761|gb|EFX47032.1| non-specific DNA-binding protein Hbsu/signal recognition
          particle-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
          Length = 90

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+ +I+ + GL++KD    +     E+ ++   G+ +++  F TF  + +  R G
Sbjct: 1  MNKVDLINNIATKSGLTKKDVETVLNGFLGEVTEALSSGDKVQLIGFGTFETRVRSERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + + I   +V  FKA + LK+ + 
Sbjct: 61 RNPQTGKTITIPESKVPAFKAGNKLKEAVK 90


>gi|304391930|ref|ZP_07373872.1| integration host factor, alpha subunit [Ahrensia sp. R2A130]
 gi|303296159|gb|EFL90517.1| integration host factor, alpha subunit [Ahrensia sp. R2A130]
          Length = 106

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 76/105 (72%), Gaps = 1/105 (0%)

Query: 1   MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           MS KT+TR+DL +++ ++ GLSR +S++ V  +  EIC +AV GE+IK+SSF TF V+ K
Sbjct: 1   MSEKTLTRADLAEAVYRKVGLSRLESSKLVEAVLEEICQAAVDGESIKLSSFGTFAVRSK 60

Query: 60  GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
             RVGRN +T +EV I  RRV+VFK S+ILK R++DD + R   K
Sbjct: 61  NERVGRNPKTGEEVPITSRRVMVFKPSNILKSRVLDDHKARSDGK 105


>gi|294083695|ref|YP_003550452.1| histone family protein DNA-binding protein [Candidatus
          Puniceispirillum marinum IMCC1322]
 gi|292663267|gb|ADE38368.1| histone family protein DNA-binding protein [Candidatus
          Puniceispirillum marinum IMCC1322]
          Length = 91

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  +++  GL++ D+ R V  +F  I  +   G  ++I  F TF V  + +  G
Sbjct: 1  MNKNDLVSEVAESSGLTKADAGRAVDAVFESIQGALKSGGDVRIVGFGTFSVAHRAATTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + ++I   +   FKA + LK+ + 
Sbjct: 61 RNPRTGETIQIKASKQPKFKAGAPLKEAVN 90


>gi|83311888|ref|YP_422152.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1]
 gi|82946729|dbj|BAE51593.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum
           AMB-1]
          Length = 136

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 48/93 (51%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
              + ++DLV +++   GLS+ D+ + V  +F  I  +   G+ +++  F TF V  + +
Sbjct: 44  GPQVNKNDLVTAVAGAAGLSKADAAKAVDGVFEAITSALKGGDEVRLVGFGTFAVASRAA 103

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
             GRN +T +++ I   +   FKA   LK  I 
Sbjct: 104 SEGRNPRTGEKISIPASKQPKFKAGKGLKDGIQ 136


>gi|84687534|ref|ZP_01015410.1| Histone-like DNA-binding protein (IHF) [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664443|gb|EAQ10931.1| Histone-like DNA-binding protein (IHF) [Rhodobacterales bacterium
           HTCC2654]
          Length = 110

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/99 (47%), Positives = 69/99 (69%), Gaps = 1/99 (1%)

Query: 1   MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           MS KT+TR DL +++ +E GLSR +S + V ++   + D+ V+GE +KISSF TF V+ K
Sbjct: 11  MSEKTLTRMDLSEAVFREVGLSRNESAQLVESVLGHVSDALVKGETVKISSFGTFSVRDK 70

Query: 60  GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            +RVGRN +T QEV I PRRV+ F+ S I+K+R+    +
Sbjct: 71  AARVGRNPKTGQEVPISPRRVLTFRPSQIMKERVAAGNK 109


>gi|325917703|ref|ZP_08179894.1| integration host factor, alpha subunit [Xanthomonas vesicatoria
          ATCC 35937]
 gi|325536097|gb|EGD07902.1| integration host factor, alpha subunit [Xanthomonas vesicatoria
          ATCC 35937]
          Length = 99

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 54/91 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  E GL+++++  FV   F+ + D+  +G  +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAERLFDEVGLNKREAKEFVDAFFDVLRDALEQGRQVKLSGFGNFDLRPKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  R VV F+    LK+R+ 
Sbjct: 62 GRNPKTGEEIPISARTVVTFRPGQKLKERVE 92


>gi|15641235|ref|NP_230867.1| integration host factor subunit alpha [Vibrio cholerae O1 biovar
          El Tor str. N16961]
 gi|121591560|ref|ZP_01678819.1| integration host factor, alpha subunit [Vibrio cholerae 2740-80]
 gi|147673436|ref|YP_001216792.1| integration host factor subunit alpha [Vibrio cholerae O395]
 gi|153801913|ref|ZP_01956499.1| integration host factor, alpha subunit [Vibrio cholerae MZO-3]
 gi|153831069|ref|ZP_01983736.1| integration host factor, alpha subunit [Vibrio cholerae 623-39]
 gi|227081394|ref|YP_002809945.1| integration host factor, alpha subunit [Vibrio cholerae M66-2]
 gi|229505185|ref|ZP_04394695.1| integration host factor alpha subunit [Vibrio cholerae BX 330286]
 gi|229511144|ref|ZP_04400623.1| integration host factor alpha subunit [Vibrio cholerae B33]
 gi|229515602|ref|ZP_04405061.1| integration host factor alpha subunit [Vibrio cholerae TMA 21]
 gi|229518262|ref|ZP_04407706.1| integration host factor alpha subunit [Vibrio cholerae RC9]
 gi|229521341|ref|ZP_04410760.1| integration host factor alpha subunit [Vibrio cholerae TM
          11079-80]
 gi|229525828|ref|ZP_04415233.1| integration host factor alpha subunit [Vibrio cholerae bv.
          albensis VL426]
 gi|229529691|ref|ZP_04419081.1| integration host factor alpha subunit [Vibrio cholerae 12129(1)]
 gi|229608205|ref|YP_002878853.1| integration host factor subunit alpha [Vibrio cholerae MJ-1236]
 gi|254848347|ref|ZP_05237697.1| integration host factor subunit alpha [Vibrio cholerae MO10]
 gi|255745625|ref|ZP_05419573.1| integration host factor alpha subunit [Vibrio cholera CIRS 101]
 gi|262159099|ref|ZP_06030211.1| integration host factor alpha subunit [Vibrio cholerae INDRE
          91/1]
 gi|262169457|ref|ZP_06037149.1| integration host factor alpha subunit [Vibrio cholerae RC27]
 gi|297578821|ref|ZP_06940749.1| integration host factor subunit alpha [Vibrio cholerae RC385]
 gi|298498680|ref|ZP_07008487.1| integration host factor, alpha subunit [Vibrio cholerae MAK 757]
 gi|14194867|sp|Q9KSN4|IHFA_VIBCH RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|172047387|sp|A5F1W7|IHFA_VIBC3 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|254803523|sp|C3LLR8|IHFA_VIBCM RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|9655703|gb|AAF94381.1| integration host factor, alpha subunit [Vibrio cholerae O1 biovar
          El Tor str. N16961]
 gi|121546587|gb|EAX56783.1| integration host factor, alpha subunit [Vibrio cholerae 2740-80]
 gi|124122558|gb|EAY41301.1| integration host factor, alpha subunit [Vibrio cholerae MZO-3]
 gi|146315319|gb|ABQ19858.1| integration host factor, alpha subunit [Vibrio cholerae O395]
 gi|148873450|gb|EDL71585.1| integration host factor, alpha subunit [Vibrio cholerae 623-39]
 gi|227009282|gb|ACP05494.1| integration host factor, alpha subunit [Vibrio cholerae M66-2]
 gi|227013139|gb|ACP09349.1| integration host factor, alpha subunit [Vibrio cholerae O395]
 gi|229333465|gb|EEN98951.1| integration host factor alpha subunit [Vibrio cholerae 12129(1)]
 gi|229339409|gb|EEO04426.1| integration host factor alpha subunit [Vibrio cholerae bv.
          albensis VL426]
 gi|229341439|gb|EEO06442.1| integration host factor alpha subunit [Vibrio cholerae TM
          11079-80]
 gi|229344977|gb|EEO09951.1| integration host factor alpha subunit [Vibrio cholerae RC9]
 gi|229347371|gb|EEO12331.1| integration host factor alpha subunit [Vibrio cholerae TMA 21]
 gi|229351109|gb|EEO16050.1| integration host factor alpha subunit [Vibrio cholerae B33]
 gi|229357408|gb|EEO22325.1| integration host factor alpha subunit [Vibrio cholerae BX 330286]
 gi|229370860|gb|ACQ61283.1| integration host factor alpha subunit [Vibrio cholerae MJ-1236]
 gi|254844052|gb|EET22466.1| integration host factor subunit alpha [Vibrio cholerae MO10]
 gi|255736700|gb|EET92097.1| integration host factor alpha subunit [Vibrio cholera CIRS 101]
 gi|262022270|gb|EEY40979.1| integration host factor alpha subunit [Vibrio cholerae RC27]
 gi|262029284|gb|EEY47936.1| integration host factor alpha subunit [Vibrio cholerae INDRE
          91/1]
 gi|297536415|gb|EFH75248.1| integration host factor subunit alpha [Vibrio cholerae RC385]
 gi|297543013|gb|EFH79063.1| integration host factor, alpha subunit [Vibrio cholerae MAK 757]
 gi|327483918|gb|AEA78325.1| Integration host factor alpha subunit [Vibrio cholerae LMA3894-4]
          Length = 98

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 55/92 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L +++ ++ G+S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAELAEALFEQLGMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARVEN 93


>gi|292492662|ref|YP_003528101.1| integration host factor subunit beta [Nitrosococcus halophilus
          Nc4]
 gi|291581257|gb|ADE15714.1| integration host factor, beta subunit [Nitrosococcus halophilus
          Nc4]
          Length = 96

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  LS +D    V TL   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLAQRQALLSYRDVELAVKTLLEVMSQALAQGERIEIRGFGSFSLHYRPPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T   V +  + V  FK    L++R+      
Sbjct: 61 GRNPKTGDAVPLPSKYVPHFKPGKELRERVDRSAHA 96


>gi|222530470|ref|YP_002574352.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          bescii DSM 6725]
 gi|222457317|gb|ACM61579.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          bescii DSM 6725]
          Length = 92

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 59/89 (66%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++ +L+K++S++ GL++KDS + +  L   I ++  +GE I++  F +F V+Q+  R G
Sbjct: 1  MSKEELIKAMSQKSGLTKKDSEKALNALIESIQEALSKGEKIQLVGFGSFEVRQRAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT +E+ I   +V VFKA  +LK+ +
Sbjct: 61 RNPQTREEIIIPATKVPVFKAGKMLKQAV 89


>gi|56697343|ref|YP_167711.1| integration host factor subunit alpha [Ruegeria pomeroyi DSS-3]
 gi|81676195|sp|Q5LQJ4|IHFA_SILPO RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|56679080|gb|AAV95746.1| integration host factor, alpha subunit [Ruegeria pomeroyi DSS-3]
          Length = 100

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/99 (48%), Positives = 70/99 (70%), Gaps = 1/99 (1%)

Query: 1  MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          MS KT+TR DL +++ +E GLSR +S + V ++ N + D+ VRGE +KISSF TF V+ K
Sbjct: 1  MSDKTLTRMDLSEAVFREVGLSRNESAQLVESMLNHMSDALVRGEQVKISSFGTFSVRDK 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           +RVGRN +T +EV I PRRV+ F+ S ++K+R+    R
Sbjct: 61 SARVGRNPKTGEEVPIQPRRVLTFRPSHLMKERVAAGNR 99


>gi|325982719|ref|YP_004295121.1| integration host factor, alpha subunit [Nitrosomonas sp. AL212]
 gi|325532238|gb|ADZ26959.1| integration host factor, alpha subunit [Nitrosomonas sp. AL212]
          Length = 98

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 55/97 (56%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T+++L   + +  GL+++++   V + + E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAELADLLFENVGLNKREAKDMVESFYEEVRTALQNGEGVKLSGFGNFQLRSKPQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T +E+ I  RRVV F AS  LK  +  +  G+
Sbjct: 62  GRNPKTGEEIPITARRVVTFHASQKLKALVEKNYHGK 98


>gi|121594735|ref|YP_986631.1| integration host factor subunit alpha [Acidovorax sp. JS42]
 gi|222110652|ref|YP_002552916.1| integration host factor subunit alpha [Acidovorax ebreus TPSY]
 gi|120606815|gb|ABM42555.1| histone family protein DNA-binding protein [Acidovorax sp. JS42]
 gi|221730096|gb|ACM32916.1| histone family protein DNA-binding protein [Acidovorax ebreus TPSY]
          Length = 116

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 55/98 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S  +T++ L   + +  GL++++S   V   F+ I  S V G+ +K+S F  F ++ K  
Sbjct: 19  SPALTKAQLADLLFEHIGLNKRESKDMVDAFFDLIVQSLVDGQDVKLSGFGNFQIRTKAP 78

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           R GRN +T + + I  RRVV F AS+ LK++I    + 
Sbjct: 79  RPGRNPRTGEAIPIKARRVVTFHASTKLKEQIQGQDKA 116


>gi|125975139|ref|YP_001039049.1| nucleoid protein Hbs [Clostridium thermocellum ATCC 27405]
 gi|256003205|ref|ZP_05428197.1| histone family protein DNA-binding protein [Clostridium
          thermocellum DSM 2360]
 gi|281418440|ref|ZP_06249459.1| histone family protein DNA-binding protein [Clostridium
          thermocellum JW20]
 gi|125715364|gb|ABN53856.1| bacterial nucleoid protein Hbs [Clostridium thermocellum ATCC
          27405]
 gi|255992896|gb|EEU02986.1| histone family protein DNA-binding protein [Clostridium
          thermocellum DSM 2360]
 gi|281407524|gb|EFB37783.1| histone family protein DNA-binding protein [Clostridium
          thermocellum JW20]
 gi|316939306|gb|ADU73340.1| histone family protein DNA-binding protein [Clostridium
          thermocellum DSM 1313]
          Length = 91

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 53/91 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  LS+KD+ + +      + ++  +G+ I++  F +F V+++  R G
Sbjct: 1  MNKTELIASMAEKSQLSKKDAEKALNAFIESVEEALAKGDKIQLVGFGSFEVRERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E+ I   +  +FK    LK+ +  
Sbjct: 61 RNPQTKEEIVIPATKTPIFKVGKGLKELVNK 91


>gi|257793014|ref|YP_003186413.1| histone family protein DNA-binding protein [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479706|gb|ACV60024.1| histone family protein DNA-binding protein [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 91

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL++  ++E GLS+KD    + TLF+ I  +   GE ++I  F TF ++++ +R  
Sbjct: 1  MNKRDLIRKTAEETGLSQKDCEAVINTLFDTIRKTVESGEKVQIIGFGTFELRERAARTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + V++  RRV  FK  + LK+ + 
Sbjct: 61 RNPRTGEAVEVPARRVPAFKPGAELKQAVQ 90


>gi|197286600|ref|YP_002152472.1| DNA-binding protein HU-alpha (HU-2) [Proteus mirabilis HI4320]
 gi|226328707|ref|ZP_03804225.1| hypothetical protein PROPEN_02602 [Proteus penneri ATCC 35198]
 gi|227355207|ref|ZP_03839616.1| DNA-binding protein HU-alpha (HU-2) [Proteus mirabilis ATCC
          29906]
 gi|194684087|emb|CAR45470.1| DNA-binding protein HU-alpha (HU-2) [Proteus mirabilis HI4320]
 gi|225201893|gb|EEG84247.1| hypothetical protein PROPEN_02602 [Proteus penneri ATCC 35198]
 gi|227164716|gb|EEI49570.1| DNA-binding protein HU-alpha (HU-2) [Proteus mirabilis ATCC
          29906]
          Length = 90

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L +S++++  L++  +   +    + +  +   G+++++  F TF V  +  R G
Sbjct: 1  MNKAELTESVAEKADLTKTQAKAAIEAFIDSVTGALKEGDSVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F A   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFTAGKALKDAVK 90


>gi|225573957|ref|ZP_03782602.1| hypothetical protein RUMHYD_02051 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038795|gb|EEG49041.1| hypothetical protein RUMHYD_02051 [Blautia hydrogenotrophica DSM
           10507]
          Length = 102

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 54/95 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
             T+ +++LV +++KE  L++KD    + +  + + D   +GE +++  F TF V ++ +
Sbjct: 8   GNTMNKTELVAAMAKETKLAKKDVEAVLKSFIDVVSDELKKGEKVQLVGFGTFEVSKRAA 67

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN QT + +KI   +   FKA   LK  + ++
Sbjct: 68  REGRNPQTGETMKISASKAPKFKAGKALKDLVNEE 102


>gi|15597934|ref|NP_251428.1| integration host factor subunit alpha [Pseudomonas aeruginosa
          PAO1]
 gi|107102269|ref|ZP_01366187.1| hypothetical protein PaerPA_01003326 [Pseudomonas aeruginosa
          PACS2]
 gi|116050728|ref|YP_790451.1| integration host factor subunit alpha [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|152984628|ref|YP_001347876.1| integration host factor subunit alpha [Pseudomonas aeruginosa
          PA7]
 gi|254235716|ref|ZP_04929039.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
          C3719]
 gi|254241191|ref|ZP_04934513.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
          2192]
 gi|296388799|ref|ZP_06878274.1| integration host factor subunit alpha [Pseudomonas aeruginosa
          PAb1]
 gi|313107807|ref|ZP_07793981.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
          39016]
 gi|2495247|sp|Q51472|IHFA_PSEAE RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|122259853|sp|Q02NN5|IHFA_PSEAB RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|166918515|sp|A6V491|IHFA_PSEA7 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|9948816|gb|AAG06126.1|AE004702_3 integration host factor, alpha subunit [Pseudomonas aeruginosa
          PAO1]
 gi|535711|gb|AAA65949.1| integration host factor alpha-subunit [Pseudomonas aeruginosa]
 gi|115585949|gb|ABJ11964.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|126167647|gb|EAZ53158.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
          C3719]
 gi|126194569|gb|EAZ58632.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
          2192]
 gi|150959786|gb|ABR81811.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
          PA7]
 gi|310880483|gb|EFQ39077.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
          39016]
          Length = 100

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 52/91 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +E GL+++++   V   F EI  +    E +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEIAERLYEELGLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  RRVV F+    LK R+ 
Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARVE 93


>gi|312126573|ref|YP_003991447.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311776592|gb|ADQ06078.1| histone family protein DNA-binding protein [Caldicellulosiruptor
          hydrothermalis 108]
          Length = 92

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 61/92 (66%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++ +L+K++S++ GL++KDS + +  L   I ++  +GE I++  F +F V+Q+  R G
Sbjct: 1  MSKEELIKAMSQKSGLTKKDSEKALNALIESIQEALSKGEKIQLVGFGSFEVRQRAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN QT +E+ I   +V VFKA  +LK+ ++ D
Sbjct: 61 RNPQTKEEIIIPATKVPVFKAGKMLKRAVIAD 92


>gi|290968877|ref|ZP_06560414.1| putative integration host factor, beta subunit [Megasphaera
          genomosp. type_1 str. 28L]
 gi|290781173|gb|EFD93764.1| putative integration host factor, beta subunit [Megasphaera
          genomosp. type_1 str. 28L]
          Length = 92

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 56/91 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ +  L++KD+ + V  +F  I +S  +G+ ++I  F TF V+Q+ +R G
Sbjct: 1  MNKTELIANVATKSDLTKKDAEKAVKAVFESISESLTKGDKVQIIGFGTFEVRQRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN + N+ ++I+  +   FKA   LK  + +
Sbjct: 61 RNPRNNEPIQIEASKTPAFKAGKQLKDLVNN 91


>gi|238757777|ref|ZP_04618960.1| Integration host factor subunit alpha [Yersinia aldovae ATCC
          35236]
 gi|238704020|gb|EEP96554.1| Integration host factor subunit alpha [Yersinia aldovae ATCC
          35236]
          Length = 98

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 53/95 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +++ I  RRVV F+    LK R+     
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVETATP 96


>gi|302391837|ref|YP_003827657.1| bacterial nucleoid protein Hbs [Acetohalobium arabaticum DSM
          5501]
 gi|302203914|gb|ADL12592.1| bacterial nucleoid protein Hbs [Acetohalobium arabaticum DSM
          5501]
          Length = 99

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 8/97 (8%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--------EAIKISSFATFHV 56
          +T+++LV  I+ + GL++KD+   V      + ++            + +++  F +F V
Sbjct: 1  MTKTELVDRIADKTGLTKKDTKETVDAFTEVVTETLQEEANKDEDERDKVQLIGFGSFEV 60

Query: 57 KQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          + + +R GRN QT +E++I  R+V  FKA   LK+ +
Sbjct: 61 RDRSARKGRNPQTGEEIEIPARKVPAFKAGKGLKEAV 97


>gi|229070625|ref|ZP_04203863.1| DNA-binding protein HU [Bacillus cereus F65185]
 gi|228712530|gb|EEL64467.1| DNA-binding protein HU [Bacillus cereus F65185]
          Length = 93

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 54/92 (58%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +++L K ++++  L++KD+      L + + ++   GE ++I  F TF V+++ +R
Sbjct: 2  QKMNKTELTKVVAEKAELTQKDAAAATQALLDTVTNALANGEKVQILGFGTFEVRERSAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E++I   +   FKA   LK+ + 
Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93


>gi|322834043|ref|YP_004214070.1| histone family protein DNA-binding protein [Rahnella sp. Y9602]
 gi|321169244|gb|ADW74943.1| histone family protein DNA-binding protein [Rahnella sp. Y9602]
          Length = 91

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + D+   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRVLDAVLASVTDTLKAGDEVALVGFGTFSVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E+ I   +V  F+A   LK  +  
Sbjct: 61 RNPQTGKEISIAAAKVPGFRAGKALKDAVNG 91


>gi|188026554|ref|ZP_02962557.2| hypothetical protein PROSTU_04688 [Providencia stuartii ATCC
          25827]
 gi|188019405|gb|EDU57445.1| hypothetical protein PROSTU_04688 [Providencia stuartii ATCC
          25827]
          Length = 96

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ E  +S+  + R V      +  S  +G+ + +  F TF V+++ +R G
Sbjct: 6  VNKSQLIDQIASEANISKAAAGRVVDAFVASVTTSLSKGDDVALVGFGTFTVRERAARTG 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI   +V  F+    LK  + 
Sbjct: 66 RNPQTGKEIKIAAAKVPAFRPGKGLKDAVN 95


>gi|52424240|ref|YP_087377.1| HimA protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306292|gb|AAU36792.1| HimA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 91

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+    L++K +   +    + I  S   G+++++  F TF V ++ +R G
Sbjct: 1  MNKTDLIDAIASAAELNKKQAKAALEATLDAITASLKAGDSVQLIGFGTFKVSERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT  E++I   +V  F +   LK  +  
Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAVNG 91


>gi|218891082|ref|YP_002439948.1| integration host factor subunit alpha [Pseudomonas aeruginosa
          LESB58]
 gi|226709740|sp|B7V312|IHFA_PSEA8 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|218771307|emb|CAW27072.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
          LESB58]
          Length = 100

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 53/91 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +E GL+++++   V   F EI  +  + E +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEIAERLYEELGLNKREAKELVELFFEEIRQALEQNEQVKLSGFGNFDLRDKRQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  RRVV F+    LK R+ 
Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARVE 93


>gi|169335876|ref|ZP_02863069.1| hypothetical protein ANASTE_02309 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258614|gb|EDS72580.1| hypothetical protein ANASTE_02309 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 90

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV ++S++ GL++K+    +      I ++  + + + +  F TF VK++  R G
Sbjct: 1  MNKSELVSALSEKTGLTKKECDNCLGAFIETITETLQKQDKVSLVGFGTFEVKERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N QT +++ I      VFKA   LK  + 
Sbjct: 61 INPQTKEKITIPASNAPVFKAGKALKDSLN 90


>gi|55821216|ref|YP_139658.1| histone-like DNA-binding protein [Streptococcus thermophilus LMG
          18311]
 gi|55823128|ref|YP_141569.1| histone-like DNA-binding protein [Streptococcus thermophilus
          CNRZ1066]
 gi|116627943|ref|YP_820562.1| histone-like DNA-binding protein [Streptococcus thermophilus
          LMD-9]
 gi|3334160|sp|P96045|DBH_STRTR RecName: Full=DNA-binding protein HU
 gi|1850896|emb|CAA72098.1| hsth [Streptococcus thermophilus]
 gi|55737201|gb|AAV60843.1| histone-like DNA-binding protein [Streptococcus thermophilus LMG
          18311]
 gi|55739113|gb|AAV62754.1| histone-like DNA-binding protein [Streptococcus thermophilus
          CNRZ1066]
 gi|116101220|gb|ABJ66366.1| bacterial nucleoid protein Hbs [Streptococcus thermophilus LMD-9]
 gi|312278530|gb|ADQ63187.1| Histone-like DNA binding protein [Streptococcus thermophilus
          ND03]
          Length = 91

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 47/89 (52%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  I +    GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFASIEEFLAAGEKVQLIGFGNFEVRERAARQGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT + + I   +V  FKA   LK  + 
Sbjct: 63 NPQTGETISIAASKVPAFKAGKALKDAVK 91


>gi|117923410|ref|YP_864027.1| integration host factor, subunit alpha [Magnetococcus sp. MC-1]
 gi|117607166|gb|ABK42621.1| integration host factor, alpha subunit [Magnetococcus sp. MC-1]
          Length = 96

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/93 (39%), Positives = 61/93 (65%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++D+V+++ +  GLS+K+S   V ++F  I +    G+ +KIS F  F +++K  R 
Sbjct: 2  TMTKADIVQTVYQRLGLSKKESADIVESVFELIRNQLENGDPVKISGFGNFTMREKNPRQ 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +EV+I  RRVV FKAS IL  ++ + 
Sbjct: 62 GRNPKTGEEVEISARRVVTFKASQILLNKVNNG 94


>gi|78188340|ref|YP_378678.1| histone-like DNA-binding protein [Chlorobium chlorochromatii
          CaD3]
 gi|78170539|gb|ABB27635.1| Histone-like DNA-binding protein [Chlorobium chlorochromatii
          CaD3]
          Length = 91

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++++LV+ I+K+  L++ D+ R +T   + +  S   G+ + +  F TF V  +  R G
Sbjct: 1  MSKAELVEKIAKQADLTKADAERALTAFVDVMTASLKAGDDVALVGFGTFSVGDRAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I  ++VV FK    LK  I
Sbjct: 61 RNPQTGETITIAAKKVVKFKPGKALKDEI 89


>gi|88810671|ref|ZP_01125928.1| Integration host factor, alpha subunit [Nitrococcus mobilis
          Nb-231]
 gi|88792301|gb|EAR23411.1| Integration host factor, alpha subunit [Nitrococcus mobilis
          Nb-231]
          Length = 100

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 53/91 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  E GL+++++   V + F EI  +  +G  +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAERLFDELGLNKREAKELVESFFEEIRCALEQGTPVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  RRVV F+    LK R+ 
Sbjct: 62 GRNPKTGEEIPICARRVVTFRPGQKLKARVE 92


>gi|254510042|ref|ZP_05122109.1| integration host factor, alpha subunit [Rhodobacteraceae
          bacterium KLH11]
 gi|221533753|gb|EEE36741.1| integration host factor, alpha subunit [Rhodobacteraceae
          bacterium KLH11]
          Length = 100

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/96 (46%), Positives = 67/96 (69%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++ +E GLSR +S + V ++ N + D+ VRGE +KISSF TF V+ K +R
Sbjct: 4  KTLTRMDLSEAVFREVGLSRNESAQLVESVLNHMSDALVRGEQVKISSFGTFSVRDKTAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          +GRN +T +EV I PRRV+ F+ S ++K R+    R
Sbjct: 64 IGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVAAGNR 99


>gi|47705|emb|CAA34713.1| integration host factor (AA 1-99) [Salmonella enterica subsp.
           enterica serovar Typhimurium]
          Length = 99

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 53/98 (54%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFGLRDKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +++ I  RRVV F+    LK R+       +
Sbjct: 62  GRNPKTGEDIPITARRVVTFRPGQKLKSRVESASPKEE 99


>gi|84393074|ref|ZP_00991840.1| Bacterial nucleoid DNA-binding protein [Vibrio splendidus 12B01]
 gi|86147879|ref|ZP_01066184.1| Bacterial nucleoid DNA-binding protein [Vibrio sp. MED222]
 gi|148981204|ref|ZP_01816330.1| bacterial nucleoid DNA-binding protein [Vibrionales bacterium
          SWAT-3]
 gi|84376326|gb|EAP93208.1| Bacterial nucleoid DNA-binding protein [Vibrio splendidus 12B01]
 gi|85834306|gb|EAQ52459.1| Bacterial nucleoid DNA-binding protein [Vibrio sp. MED222]
 gi|145960960|gb|EDK26286.1| bacterial nucleoid DNA-binding protein [Vibrionales bacterium
          SWAT-3]
          Length = 90

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +      + D+   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLGGVTDALKDGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  E++I    V  F A   LK  + 
Sbjct: 61 RNPKTGDEIQIAAANVPAFVAGKALKDSVK 90


>gi|148251722|ref|YP_001236307.1| integration host factor subunit beta [Bradyrhizobium sp. BTAi1]
 gi|166918540|sp|A5E8A7|IHFB_BRASB RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|146403895|gb|ABQ32401.1| Integration host factor beta-subunit (IHF-beta) [Bradyrhizobium sp.
           BTAi1]
          Length = 103

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 1/103 (0%)

Query: 5   ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV+ I++    L ++D    V  + +EI  +  RG+ +++  F  F VK + +R 
Sbjct: 1   MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN +T   V +D + V  FK    +++R+  D      + DD
Sbjct: 61  GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRDNPAGAADTDD 103


>gi|152996604|ref|YP_001341439.1| integration host factor subunit alpha [Marinomonas sp. MWYL1]
 gi|226709731|sp|A6VYH5|IHFA_MARMS RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|150837528|gb|ABR71504.1| integration host factor, alpha subunit [Marinomonas sp. MWYL1]
          Length = 98

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 56/95 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++T++DL +++    GLS+KD+   V   F+ +  S +  + +K+S F  F V++K  R 
Sbjct: 3  SLTKADLAENLVDSIGLSKKDAKDLVEGFFDVVRSSLIERQQVKLSGFGNFEVREKSQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +E+ I  R VV F+    LK ++ D M+
Sbjct: 63 GRNPKTGEEIPITARTVVTFRPGQKLKSKVEDYMQ 97


>gi|77360840|ref|YP_340415.1| integration host factor (IHF), alpha subunit, DNA-bending
          protein, DNA replication [Pseudoalteromonas
          haloplanktis TAC125]
 gi|123588704|sp|Q3IIL3|IHFA_PSEHT RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|76875751|emb|CAI86972.1| integration host factor (IHF), alpha subunit, DNA-bending
          protein, DNA replication [Pseudoalteromonas
          haloplanktis TAC125]
          Length = 99

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 54/91 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + + ++ G+++KD+   V   F EI  +  +GE IK+S F  F ++ K  R 
Sbjct: 2  ALTKADIAEHLFEKLGINKKDAKDLVEAFFEEIRSALEKGEQIKLSGFGNFDLRDKKERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +++ I  RRVV F+    LK R+ 
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRVE 92


>gi|153833703|ref|ZP_01986370.1| integration host factor, alpha subunit [Vibrio harveyi HY01]
 gi|156974397|ref|YP_001445304.1| integration host factor subunit alpha [Vibrio harveyi ATCC
          BAA-1116]
 gi|269962174|ref|ZP_06176527.1| integration host factor, alpha subunit [Vibrio harveyi 1DA3]
 gi|166918532|sp|A7MVH4|IHFA_VIBHB RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|148869982|gb|EDL68942.1| integration host factor, alpha subunit [Vibrio harveyi HY01]
 gi|156525991|gb|ABU71077.1| hypothetical protein VIBHAR_02112 [Vibrio harveyi ATCC BAA-1116]
 gi|269833005|gb|EEZ87111.1| integration host factor, alpha subunit [Vibrio harveyi 1DA3]
          Length = 98

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 53/92 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L +++  + G S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAELAENLFDKLGFSKRDAKETVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARVEN 93


>gi|238754238|ref|ZP_04615595.1| DNA-binding protein HU-beta [Yersinia ruckeri ATCC 29473]
 gi|238707485|gb|EEP99845.1| DNA-binding protein HU-beta [Yersinia ruckeri ATCC 29473]
          Length = 90

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + +S   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKAGDDVALVGFGTFAVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F+A   LK  + 
Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKGLKDAVN 90


>gi|229177513|ref|ZP_04304892.1| DNA-binding protein HU [Bacillus cereus 172560W]
 gi|228605960|gb|EEK63402.1| DNA-binding protein HU [Bacillus cereus 172560W]
          Length = 93

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 54/92 (58%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +++L K ++++  L++KD+      L + I ++   GE ++I  F TF V+++ +R
Sbjct: 2  QKMNKTELTKVVAEKAELTQKDAAAATQALLDTITNALATGEKVQILGFGTFEVRERSAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E++I   +   FKA   LK+ + 
Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93


>gi|260587366|ref|ZP_05853279.1| DNA-binding protein HU [Blautia hansenii DSM 20583]
 gi|331083667|ref|ZP_08332778.1| DNA-binding protein HU [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260542233|gb|EEX22802.1| DNA-binding protein HU [Blautia hansenii DSM 20583]
 gi|330403878|gb|EGG83430.1| DNA-binding protein HU [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 91

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R++LV +++++  LS+KD+   +    + + +   +GE +++  F TF V ++ +R G
Sbjct: 1  MNRTELVAAMAEKTQLSKKDADLALKAFIDVVSEEMQKGEKVQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + + I   +   FKA   LK  + 
Sbjct: 61 RNPQTGETMTIAASKSPKFKAGKALKDLVN 90


>gi|148255979|ref|YP_001240564.1| integration host factor subunit alpha [Bradyrhizobium sp. BTAi1]
 gi|166918499|sp|A5EKG4|IHFA_BRASB RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|146408152|gb|ABQ36658.1| integration host factor alpha-subunit (IHF-alpha) [Bradyrhizobium
           sp. BTAi1]
          Length = 119

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/104 (48%), Positives = 70/104 (67%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR DL +++ ++ GLSR +S+ FV  +  EI D   RGE +K+SSF +F V++KG 
Sbjct: 5   GKTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVRKKGQ 64

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           R+GRN +T  EV I PRRV+VFK S+ILK+RI       K N +
Sbjct: 65  RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINGQQGSGKMNGE 108


>gi|152997229|ref|YP_001342064.1| integration host factor subunit beta [Marinomonas sp. MWYL1]
 gi|189045039|sp|A6W0A0|IHFB_MARMS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|150838153|gb|ABR72129.1| integration host factor, beta subunit [Marinomonas sp. MWYL1]
          Length = 102

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++  I ++  L  KD  + +  +   + DS   GE I+I  F +F +  +  R+
Sbjct: 1  MTKSELIELLIDQQSHLPVKDVEQAIKAMLEHMSDSLANGERIEIRGFGSFSLHYRAPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T + V++  + V  FK    L++ + 
Sbjct: 61 GRNPKTGESVELSAKYVPHFKPGKELRELVN 91


>gi|84516338|ref|ZP_01003698.1| Histone-like DNA-binding protein (IHF) [Loktanella vestfoldensis
          SKA53]
 gi|84510034|gb|EAQ06491.1| Histone-like DNA-binding protein (IHF) [Loktanella vestfoldensis
          SKA53]
          Length = 100

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/96 (45%), Positives = 63/96 (65%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+TR DL +++  E GLSR DS   V ++   + DS V G+ +KISSF TF V+ K +R
Sbjct: 4  KTLTRMDLAEAVHNEVGLSRNDSADLVESVLTHVSDSLVAGDTVKISSFGTFAVRDKAAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          VGRN +T +EV I PRRV+ F+ S ++K R+    +
Sbjct: 64 VGRNPKTGEEVPIHPRRVLTFRPSHLMKDRVASGNK 99


>gi|288904847|ref|YP_003430069.1| DNA-binding protein HU [Streptococcus gallolyticus UCN34]
 gi|306830879|ref|ZP_07464041.1| DNA-binding protein HU [Streptococcus gallolyticus subsp.
          gallolyticus TX20005]
 gi|325977779|ref|YP_004287495.1| DNA-binding protein HU [Streptococcus gallolyticus subsp.
          gallolyticus ATCC BAA-2069]
 gi|288731573|emb|CBI13128.1| DNA-binding protein HU [Streptococcus gallolyticus UCN34]
 gi|304426902|gb|EFM30012.1| DNA-binding protein HU [Streptococcus gallolyticus subsp.
          gallolyticus TX20005]
 gi|325177707|emb|CBZ47751.1| DNA-binding protein HU [Streptococcus gallolyticus subsp.
          gallolyticus ATCC BAA-2069]
          Length = 91

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 49/89 (55%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F+ I      GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFSAIESFLSEGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E++I   +V  FKA   LK  + 
Sbjct: 63 NPQTGEEIEIAASKVPAFKAGKALKDAVK 91


>gi|124267071|ref|YP_001021075.1| integration host factor alpha-subunit [Methylibium petroleiphilum
           PM1]
 gi|124259846|gb|ABM94840.1| integration host factor alpha-subunit [Methylibium petroleiphilum
           PM1]
          Length = 113

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 55/100 (55%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L + + +  GL++++S   V   F  I    V G+ +K+S F  F +++K  
Sbjct: 11  TPTLTKAELAELLFERLGLNKRESKDMVEAFFELIHGQLVEGQDVKLSGFGNFQIRRKAP 70

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           R GRN +T + + I  R VV F AS  LK  +  D+   +
Sbjct: 71  RPGRNPRTGEAIPIKARNVVTFHASHKLKGVVQGDIPSAE 110


>gi|120611942|ref|YP_971620.1| histone family protein DNA-binding protein [Acidovorax citrulli
           AAC00-1]
 gi|120590406|gb|ABM33846.1| histone family protein DNA-binding protein [Acidovorax citrulli
           AAC00-1]
          Length = 109

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 3/110 (2%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +TRSDLV+ ++  FG L+++D+   V T+ + + D+ VRG  I++  F +F V ++  R+
Sbjct: 1   MTRSDLVEELAARFGQLTQRDAEAAVKTILDAVGDALVRGHRIEVRGFGSFSVNRRPPRM 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           GRN ++ + V I  +RV  FK    L++ +  D R  +        PS +
Sbjct: 61  GRNPRSGEAVHIPEKRVPHFKPGKALREAV--DRRTAEMGIGIAADPSDA 108


>gi|261250477|ref|ZP_05943052.1| DNA-binding protein HU-alpha [Vibrio orientalis CIP 102891]
 gi|260939046|gb|EEX95033.1| DNA-binding protein HU-alpha [Vibrio orientalis CIP 102891]
          Length = 90

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 43/90 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +      +  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLEGVTGALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  E++I    V  F A   LK  + 
Sbjct: 61 RNPKTGDEIQIAAANVPAFVAGKALKDAVK 90


>gi|134288835|ref|YP_001111235.1| gp35 [Burkholderia phage phiE255]
 gi|134132171|gb|ABO60692.1| gp35 [Burkholderia phage phiE255]
          Length = 90

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+  ++ E GL++ DS   +  +   I  S  +G+ + ++ F  F V  + +R G
Sbjct: 1  MNKSDLINHVAAETGLTKADSGFALEAVLEGITKSLRKGDTVTLTGFGVFSVGARAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T +E+KI   +   FKA   LK  + 
Sbjct: 61 RNPATGEEIKIPASKAPKFKAGKGLKDAVK 90


>gi|146328691|ref|YP_001209944.1| integration host factor, alpha subunit [Dichelobacter nodosus
          VCS1703A]
 gi|189044699|sp|A5EXT4|IHFA_DICNV RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|146232161|gb|ABQ13139.1| integration host factor, alpha subunit [Dichelobacter nodosus
          VCS1703A]
          Length = 98

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 55/95 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++D+V++I  + G+ R ++   V  LF EI      GE +K+S F  F ++ K  R 
Sbjct: 2  TLTKADIVEAIIAQIGIPRPEAREIVDDLFEEIRSCLATGEPVKLSGFGNFELRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +E+ I  RRVV FKA   LK R+ +   
Sbjct: 62 GRNPKTGEEIPITARRVVSFKAGQKLKARVAESKP 96


>gi|304310704|ref|YP_003810302.1| Integration host factor alpha subunit [gamma proteobacterium HdN1]
 gi|301796437|emb|CBL44645.1| Integration host factor alpha subunit [gamma proteobacterium HdN1]
          Length = 100

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 56/98 (57%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++DL + + +E GL+++++   V   F+EI     + E +K+S F  F ++ K  R 
Sbjct: 3   ALTKADLAERLFEELGLNKREAKEMVELFFDEIRVCLEQNEHVKLSGFGNFDLRNKRERP 62

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +E+ I  RRVV F+    LK+R+      ++
Sbjct: 63  GRNPKTGEEIPITARRVVTFRPGQKLKQRVEAYAGAKQ 100


>gi|23014673|ref|ZP_00054478.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 106

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/98 (45%), Positives = 69/98 (70%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KTITR+ L +++ +E GLSR +S   +  + +EI  +  +G+A+KISSF +F V+ KG R
Sbjct: 4   KTITRAQLSEAVYQEVGLSRNESADLLEAVLDEISGALAKGDAVKISSFGSFSVRSKGQR 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           +GRN +T +EV I PRRV+VF+ S +LKK+I D +  +
Sbjct: 64  IGRNPKTGEEVPITPRRVLVFRPSQLLKKKINDGVAAK 101


>gi|163843049|ref|YP_001627453.1| integration host factor subunit alpha [Brucella suis ATCC 23445]
 gi|189044695|sp|B0CLA3|IHFA_BRUSI RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|163673772|gb|ABY37883.1| integration host factor, alpha subunit [Brucella suis ATCC 23445]
          Length = 107

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/102 (48%), Positives = 75/102 (73%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DLV+++ ++ GLSR +S   V  + +E+CD+ V GE +K+SSFATF V+ K  
Sbjct: 3   GKTVTRADLVEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           R+GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+  
Sbjct: 63  RIGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQGK 104


>gi|59713004|ref|YP_205780.1| HU, DNA-binding transcriptional regulator, alpha subunit [Vibrio
          fischeri ES114]
 gi|197336341|ref|YP_002157189.1| DNA-binding protein HU-beta [Vibrio fischeri MJ11]
 gi|59481105|gb|AAW86892.1| HU, DNA-binding transcriptional regulator, alpha subunit [Vibrio
          fischeri ES114]
 gi|197317831|gb|ACH67278.1| DNA-binding protein HU-beta [Vibrio fischeri MJ11]
          Length = 90

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+ +I+++  LS+  +   +      +  +   GE +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDAIAEKADLSKAQAKAALEATLEGVTGALKDGEQVQLIGFGTFKVNNRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E++I   +V  F A   LK+ + 
Sbjct: 61 RNPKTGEEIQIKAAKVPAFVAGKALKESVN 90


>gi|117921099|ref|YP_870291.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3]
 gi|117613431|gb|ABK48885.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3]
          Length = 90

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + +    + +    G+ I +  F TF V+++  R G
Sbjct: 1  MNKSELIEKIASGADISKAAAGRALDSFIAAVTEGLKEGDKISLVGFGTFEVRERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT QE+KI   ++  FKA   LK  + 
Sbjct: 61 RNPQTGQEIKIAAAKIPAFKAGKALKDAVN 90


>gi|238751009|ref|ZP_04612505.1| DNA-binding protein HU [Yersinia rohdei ATCC 43380]
 gi|238710699|gb|EEQ02921.1| DNA-binding protein HU [Yersinia rohdei ATCC 43380]
          Length = 90

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + +S   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDEVALVGFGTFAVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F+A   LK  + 
Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKGLKDAVN 90


>gi|326803714|ref|YP_004321532.1| DNA-binding protein HU-beta [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651370|gb|AEA01553.1| DNA-binding protein HU-beta [Aerococcus urinae ACS-120-V-Col10a]
          Length = 92

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 51/90 (56%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           ++DLV+ +++  G S+K+    V  +F+ I +    GE ++I  F  F V+++ +R GR
Sbjct: 3  NKADLVQKVAESTGESKKNVQPVVDAVFSSIENFLADGENVQIIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N QT +E++I   +V  FKA   LK  +  
Sbjct: 63 NPQTGEEIQIPASKVPAFKAGKGLKDVVKG 92


>gi|319404102|emb|CBI77692.1| DNA-binding protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 92

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV S++++ G+S+  +   V      + ++   G  ++I  F +F V  + +  G
Sbjct: 1  MNKSELVNSVAEKAGISKAQAGASVDAFIASVTEALASGGDVRIPGFGSFEVSHRAATKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T  E+ I  R V  F A   LK+ + +
Sbjct: 61 RNPSTGAEITIPARSVPKFSAGKSLKEAVNN 91


>gi|262273289|ref|ZP_06051104.1| DNA-binding protein HU-alpha [Grimontia hollisae CIP 101886]
 gi|262222662|gb|EEY73972.1| DNA-binding protein HU-alpha [Grimontia hollisae CIP 101886]
          Length = 90

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+++  LS+  +   +      I  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTNLIDLIAEKADLSKAQAKAALEATLAGIEGALKDGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT QE++I    V  F A   LK  + 
Sbjct: 61 RNPQTGQEIQIAAANVPAFVAGKALKDAVK 90


>gi|153009845|ref|YP_001371060.1| integration host factor subunit alpha [Ochrobactrum anthropi ATCC
           49188]
 gi|166918512|sp|A6X1X7|IHFA_OCHA4 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|151561733|gb|ABS15231.1| integration host factor, alpha subunit [Ochrobactrum anthropi ATCC
           49188]
          Length = 107

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/104 (46%), Positives = 74/104 (71%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +++ ++ GLSR +S   V  + +E+CD+ V GE +K+SSFATF V+ K  
Sbjct: 3   GKTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           R+GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+    
Sbjct: 63  RIGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRETKSQ 106


>gi|261210560|ref|ZP_05924853.1| DNA-binding protein HU-beta [Vibrio sp. RC341]
 gi|260840345|gb|EEX66916.1| DNA-binding protein HU-beta [Vibrio sp. RC341]
          Length = 90

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 45/88 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I+    +S+  + R +      +  +   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVEQIAANADISKASAGRALDAFIEAMSGTLQSGDQVALVGFGTFSVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN +T +E+KI   +V  FKA   LK  
Sbjct: 61 RNPKTGEEIKIAEAKVPSFKAGKALKDA 88


>gi|319898779|ref|YP_004158872.1| DNA-binding protein [Bartonella clarridgeiae 73]
 gi|319402743|emb|CBI76290.1| DNA-binding protein [Bartonella clarridgeiae 73]
          Length = 92

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV S++++ G+S+  +   V      + ++   G  +++  F +F V  + +  G
Sbjct: 1  MNKSELVNSVAEKAGISKAQAGASVDAFIASVTEALASGGDVRLPGFGSFEVSHRAATKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T  E+ I  R V  F A   LK+ + +
Sbjct: 61 RNPSTGAEITIPARSVPKFSAGKGLKEAVNN 91


>gi|188584712|ref|YP_001916257.1| nucleoid protein Hbs [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349399|gb|ACB83669.1| nucleoid protein Hbs [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 92

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 56/92 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  +++   +++KD+ + V  +F+ I D   + + +++  F TF V+++ +R G
Sbjct: 1  MNKTELISKVAERSEMTKKDTEKVVNEVFDVISDQLAKEDKVQLIGFGTFEVRERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN  T + ++I+  +V  FKA   LK+++ + 
Sbjct: 61 RNPSTGEVIQIEATKVPAFKAGKALKEKVKNG 92


>gi|83745916|ref|ZP_00942973.1| DNA-binding protein HU [Ralstonia solanacearum UW551]
 gi|83727606|gb|EAP74727.1| DNA-binding protein HU [Ralstonia solanacearum UW551]
          Length = 123

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 47/91 (51%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            + ++DL+  ++ +  +S+  + R +  L   I D+   G ++ +  F TF V Q+ +R 
Sbjct: 33  AMNKTDLIDHVAAQTDMSKAAAGRAIDALIGGIKDALCDGGSVTLVGFGTFLVGQRSARA 92

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN +T   +KI+  +V  FK    LK  + 
Sbjct: 93  GRNPRTGATIKIEGAKVAKFKPGKALKDALN 123


>gi|32034579|ref|ZP_00134735.1| COG0776: Bacterial nucleoid DNA-binding protein [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
 gi|126207602|ref|YP_001052827.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae L20]
 gi|165975570|ref|YP_001651163.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 3
          str. JL03]
 gi|190149383|ref|YP_001967908.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 7
          str. AP76]
 gi|303249818|ref|ZP_07336022.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 6
          str. Femo]
 gi|303251938|ref|ZP_07338109.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 2
          str. 4226]
 gi|307244922|ref|ZP_07527019.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 1
          str. 4074]
 gi|307247097|ref|ZP_07529149.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 2
          str. S1536]
 gi|307249318|ref|ZP_07531312.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 4
          str. M62]
 gi|307251641|ref|ZP_07533546.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 6
          str. Femo]
 gi|307253876|ref|ZP_07535728.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 9
          str. CVJ13261]
 gi|307256139|ref|ZP_07537926.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
          10 str. D13039]
 gi|307258330|ref|ZP_07540071.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
          11 str. 56153]
 gi|307260571|ref|ZP_07542263.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
          12 str. 1096]
 gi|307262701|ref|ZP_07544329.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
          13 str. N273]
 gi|126096394|gb|ABN73222.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
          5b str. L20]
 gi|165875671|gb|ABY68719.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 3
          str. JL03]
 gi|189914514|gb|ACE60766.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 7
          str. AP76]
 gi|302649368|gb|EFL79553.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 2
          str. 4226]
 gi|302651385|gb|EFL81537.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 6
          str. Femo]
 gi|306854087|gb|EFM86295.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 1
          str. 4074]
 gi|306856346|gb|EFM88497.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 2
          str. S1536]
 gi|306858612|gb|EFM90674.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 4
          str. M62]
 gi|306860838|gb|EFM92846.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 6
          str. Femo]
 gi|306863080|gb|EFM95022.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 9
          str. CVJ13261]
 gi|306865320|gb|EFM97216.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
          10 str. D13039]
 gi|306867514|gb|EFM99361.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
          11 str. 56153]
 gi|306869648|gb|EFN01433.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
          12 str. 1096]
 gi|306871956|gb|EFN03672.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
          13 str. N273]
          Length = 90

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+    LS+KD+   +    N I +S   G+ +++  F TF V ++ +R G
Sbjct: 1  MNKTELIDAIAAGAELSKKDAKAALEATLNAISESLKNGDTVQLIGFGTFKVNERNARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E+KI   +V  F A   LK  + 
Sbjct: 61 RNPRTGEEIKIAASKVPAFVAGKALKDLVK 90


>gi|71908284|ref|YP_285871.1| integration host factor subunit alpha [Dechloromonas aromatica
          RCB]
 gi|123774328|sp|Q47CN0|IHFA2_DECAR RecName: Full=Integration host factor subunit alpha 2;
          Short=IHF-alpha 2
 gi|71847905|gb|AAZ47401.1| Integration host factor, alpha subunit [Dechloromonas aromatica
          RCB]
          Length = 100

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 55/96 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+++L   + ++ GL+++++   V   F EI ++   G+ +K+S F  F ++ K  R 
Sbjct: 2  TLTKAELADLLFEKVGLNKREAKDMVEAFFEEIRNALEVGDGVKLSGFGNFQLRDKPQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T QE+ I  RRVV F AS  LK  +     G
Sbjct: 62 GRNPKTGQEIPITARRVVTFHASQKLKSDVELAFDG 97


>gi|144899463|emb|CAM76327.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum
          gryphiswaldense MSR-1]
          Length = 90

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV +++   GLS+ D+ + V  +F+ I  +   G+ +++  F TF V ++ +  G
Sbjct: 1  MNKNDLVTAVAASAGLSKADAAKAVDGVFDAISGALAGGDDVRLVGFGTFAVSERAASEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + +KI   +   FKA   LK  + 
Sbjct: 61 RNPRTGETIKIPASKQPKFKAGKGLKDSVQ 90


>gi|285017870|ref|YP_003375581.1| integration host factor alpha-subunit (ihf-alpha) protein
          [Xanthomonas albilineans GPE PC73]
 gi|283473088|emb|CBA15593.1| putative integration host factor alpha-subunit (ihf-alpha)
          protein [Xanthomonas albilineans]
          Length = 99

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 55/91 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  E GL+++++  FV   F+ + ++  +G  +K+S F  F +++K  R 
Sbjct: 2  ALTKAEMAERLFDEVGLNKREAKEFVDAFFDVLREALEQGRQVKLSGFGNFDLRRKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  R VV F+    LK+R+ 
Sbjct: 62 GRNPKTGEEIPISARTVVTFRPGQKLKERVE 92


>gi|225571163|ref|ZP_03780161.1| hypothetical protein CLOHYLEM_07251 [Clostridium hylemonae DSM
          15053]
 gi|225159994|gb|EEG72613.1| hypothetical protein CLOHYLEM_07251 [Clostridium hylemonae DSM
          15053]
          Length = 91

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+++  LS+KDS + +    + I     +GE I++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAIAEQAELSKKDSEKALKAFVDVITAELKKGEKIQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI   +   FKA   LK  + 
Sbjct: 61 RNPQTGKTMKIAACKAPKFKAGKALKDAVN 90


>gi|146282706|ref|YP_001172859.1| integration host factor subunit alpha [Pseudomonas stutzeri
          A1501]
 gi|166918518|sp|A4VM16|IHFA_PSEU5 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|145570911|gb|ABP80017.1| integration host factor, alpha subunit [Pseudomonas stutzeri
          A1501]
 gi|327481045|gb|AEA84355.1| integration host factor subunit alpha [Pseudomonas stutzeri DSM
          4166]
          Length = 100

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 52/91 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +E GL+++++   V   F EI  +    E +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEMAERLYEELGLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  RRVV F+    LK R+ 
Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARVE 93


>gi|332969967|gb|EGK08967.1| DNA-binding protein HU-beta [Kingella kingae ATCC 23330]
          Length = 122

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 51/103 (49%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            K + +S+L+ +I+ E GL++ D+++ +      + ++   G++I +  F TF V  +  
Sbjct: 20  GKIMNKSELIDAIATESGLTKTDASKALDAFTEVVKNTLKTGDSITLVGFGTFKVADRAE 79

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           R G N +T + + I   RV  F     LK  ++ +    K  K
Sbjct: 80  RQGLNPKTKEAITIPAARVPKFTPGKALKDVLVAEQPAAKKKK 122


>gi|221134660|ref|ZP_03560963.1| integration host factor, alpha subunit [Glaciecola sp. HTCC2999]
          Length = 99

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 54/93 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GL++KD+   V   F EI  S   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAEHLFEKVGLNKKDTKDLVEAFFEEIKVSLENGEQVKLSGFGNFDLRTKKERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +++ I  RRVV FK    LK R+ + 
Sbjct: 62 GRNPKTGEDIPIKARRVVTFKPGQKLKSRVENA 94


>gi|323487339|ref|ZP_08092639.1| hypothetical protein HMPREF9474_04390 [Clostridium symbiosum
          WAL-14163]
 gi|323694222|ref|ZP_08108398.1| DNA-binding protein HU [Clostridium symbiosum WAL-14673]
 gi|323399384|gb|EGA91782.1| hypothetical protein HMPREF9474_04390 [Clostridium symbiosum
          WAL-14163]
 gi|323501695|gb|EGB17581.1| DNA-binding protein HU [Clostridium symbiosum WAL-14673]
          Length = 91

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  LS+KD+ + +    + + D  V+GE I++  F TF V ++ +R G
Sbjct: 1  MNKTELIAAVAEKAELSKKDAEKAIKAFTDVVSDELVKGEKIQLVGFGTFEVAERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I   +   FKA   LK  + 
Sbjct: 61 RNPKTGETMPIAASKTPKFKAGKALKDMVN 90


>gi|307942847|ref|ZP_07658192.1| integration host factor, beta subunit [Roseibium sp. TrichSKD4]
 gi|307773643|gb|EFO32859.1| integration host factor, beta subunit [Roseibium sp. TrichSKD4]
          Length = 99

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 58/94 (61%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I+++   L ++D    V  + +EI ++ +RG+ +++  F  F VK + +R+
Sbjct: 1  MIKSELVQHIAEQNPHLYQRDVENIVNAILDEITEALMRGDRVELRGFGAFSVKNRPARI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T Q+V+++ + V  FK    ++ R+ D +
Sbjct: 61 GRNPRTGQKVEVEEKHVPFFKTGKEMRLRLNDGV 94


>gi|330721962|gb|EGG99900.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC2047]
          Length = 90

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 47/88 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+ E  +S+  + R +    + + +   +G  + +  F TF VK + +R G
Sbjct: 1  MNKSELIDAIAAEADISKASAGRALDAAVDAVTNELKKGGQVSLVGFGTFSVKDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN QT + ++I   ++  FKA   LK  
Sbjct: 61 RNPQTGETIQIKAAKIPSFKAGKALKDA 88


>gi|319654516|ref|ZP_08008600.1| non-specific DNA-binding protein [Bacillus sp. 2_A_57_CT2]
 gi|317393826|gb|EFV74580.1| non-specific DNA-binding protein [Bacillus sp. 2_A_57_CT2]
          Length = 92

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 51/92 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV ++++   LS+KD+++ V  +F  + +    G+  +   F  F V+++ +R G
Sbjct: 1  MNKTELVNAVAERSELSKKDASKAVDAVFEAVTNVLKEGKKAQFLGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN QT +E++I   +V  F     LK  + + 
Sbjct: 61 RNPQTGEEIEIAASKVPAFSPGKALKDAVKNS 92


>gi|220934628|ref|YP_002513527.1| integration host factor, alpha subunit [Thioalkalivibrio sp.
          HL-EbGR7]
 gi|254803522|sp|B8GRI6|IHFA_THISH RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|219995938|gb|ACL72540.1| integration host factor, alpha subunit [Thioalkalivibrio sp.
          HL-EbGR7]
          Length = 99

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 54/91 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + + +E GL+++++   V   F E+  +  RGE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADMSERLFEELGLNKREAKELVEMFFEEVRMALERGEQVKLSGFGNFTLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  RRVV F+    LK R+ 
Sbjct: 62 GRNPKTGEEIPISARRVVTFRPGQKLKARVE 92


>gi|27363508|ref|NP_759036.1| DNA-binding protein HU-beta [Vibrio vulnificus CMCP6]
 gi|37679291|ref|NP_933900.1| nucleoid DNA-binding protein [Vibrio vulnificus YJ016]
 gi|27359624|gb|AAO08563.1| DNA-binding protein HU-beta [Vibrio vulnificus CMCP6]
 gi|37198034|dbj|BAC93871.1| bacterial nucleoid DNA-binding protein [Vibrio vulnificus YJ016]
          Length = 97

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 47/89 (52%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+ ++ LV+SI+    +S+  + R +      +  +   G+ + +  F TF V+ + +R 
Sbjct: 7  TVNKTQLVESIAANADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAART 66

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T +E++I   +V  FKA   LK  
Sbjct: 67 GRNPKTGEEIQIAEAKVPSFKAGKALKDA 95


>gi|312862684|ref|ZP_07722924.1| DNA-binding protein HU-beta [Streptococcus vestibularis F0396]
 gi|322516639|ref|ZP_08069553.1| DNA-binding protein HU [Streptococcus vestibularis ATCC 49124]
 gi|311101544|gb|EFQ59747.1| DNA-binding protein HU-beta [Streptococcus vestibularis F0396]
 gi|322124909|gb|EFX96333.1| DNA-binding protein HU [Streptococcus vestibularis ATCC 49124]
          Length = 91

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 47/89 (52%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  I +    GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFASIEEFLATGEKVQLIGFGNFEVRERAARQGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT + + I   +V  FKA   LK  + 
Sbjct: 63 NPQTGETISIAASKVPAFKAGKALKDAVK 91


>gi|212709200|ref|ZP_03317328.1| hypothetical protein PROVALCAL_00233 [Providencia alcalifaciens
          DSM 30120]
 gi|212688112|gb|EEB47640.1| hypothetical protein PROVALCAL_00233 [Providencia alcalifaciens
          DSM 30120]
          Length = 96

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L++ I+ E  +S+  + R V      +  S  +G+ + +  F TF+V+Q+ +R G
Sbjct: 6  VNKSQLIEKIAAEANISKAAAGRVVDAFVASVTTSLSKGDDVTLVGFGTFNVRQRAARTG 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E+KI   +V  F+A   LK  +  
Sbjct: 66 RNPQTGKEIKIAAAKVPAFRAGKGLKDAVNG 96


>gi|71281140|ref|YP_270448.1| HU family DNA-binding protein [Colwellia psychrerythraea 34H]
 gi|71146880|gb|AAZ27353.1| DNA-binding protein, HU family [Colwellia psychrerythraea 34H]
          Length = 90

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 44/88 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L++ I+    +S+  + R + +    + D    GE + +  F TF V+ + +R G
Sbjct: 1  MNKSQLIEKIAAGADISKAAAGRALDSFIGAVTDELKDGEQVALVGFGTFSVRDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN QT   ++I   ++  FKA   LK  
Sbjct: 61 RNPQTGATIQIAAAKIPSFKAGKALKDA 88


>gi|145220310|ref|YP_001131019.1| histone family protein DNA-binding protein [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206474|gb|ABP37517.1| histone family protein DNA-binding protein [Chlorobium
           phaeovibrioides DSM 265]
          Length = 102

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 58/100 (58%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           M  T T++DLV  I+   GL++ ++   V +LF  I DS   G+ I+I  F +F+++ K 
Sbjct: 1   MGNTTTKADLVNVIAHRTGLTKNETETVVDSLFESIIDSLKAGKRIEIRGFGSFNIRYKN 60

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
            R  RN +T ++V ++P+ V  FK S   K+ + + ++G 
Sbjct: 61  LRQARNPRTGEKVTVEPKNVPTFKISKEFKQAVSESLKGN 100


>gi|153212317|ref|ZP_01948105.1| integration host factor, alpha subunit [Vibrio cholerae 1587]
 gi|258620238|ref|ZP_05715277.1| integration host factor, alpha subunit [Vibrio mimicus VM573]
 gi|258624402|ref|ZP_05719349.1| integration host factor, alpha subunit [Vibrio mimicus VM603]
 gi|262171747|ref|ZP_06039425.1| integration host factor alpha subunit [Vibrio mimicus MB-451]
 gi|124116695|gb|EAY35515.1| integration host factor, alpha subunit [Vibrio cholerae 1587]
 gi|258583249|gb|EEW08051.1| integration host factor, alpha subunit [Vibrio mimicus VM603]
 gi|258587596|gb|EEW12306.1| integration host factor, alpha subunit [Vibrio mimicus VM573]
 gi|261892823|gb|EEY38809.1| integration host factor alpha subunit [Vibrio mimicus MB-451]
          Length = 98

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 55/92 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L +++ ++ G+S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAELAEALFEKLGMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARVEN 93


>gi|161598603|ref|YP_001573818.1| small DNA-binding protein [Bacillus thuringiensis serovar
          israelensis]
 gi|228905297|ref|ZP_04069279.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222]
 gi|21685470|emb|CAD30132.1| small DNA-binding protein (bacterial histone-like family)
          [Bacillus thuringiensis serovar israelensis]
 gi|228854334|gb|EEM99010.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222]
          Length = 92

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K ++ +  L +  ++  V  +   I  +   G+ +++  F +F VK++ +R G
Sbjct: 1  MNKSELIKQVAIQSELKKPQASLAVDAVLESIQHALQNGDHVQLFGFGSFEVKERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T + + I   +   FKA   LK+ + 
Sbjct: 61 RNPHTGEALTIPAGKTPAFKAGKALKEAVN 90


>gi|226954296|ref|ZP_03824760.1| integration host factor (IHF), alpha subunit, DNA-binding protein
          [Acinetobacter sp. ATCC 27244]
 gi|294649378|ref|ZP_06726809.1| integration host factor subunit alpha [Acinetobacter haemolyticus
          ATCC 19194]
 gi|226834967|gb|EEH67350.1| integration host factor (IHF), alpha subunit, DNA-binding protein
          [Acinetobacter sp. ATCC 27244]
 gi|292824748|gb|EFF83520.1| integration host factor subunit alpha [Acinetobacter haemolyticus
          ATCC 19194]
          Length = 98

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 57/93 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+   +S+   L+R+++ + V   F+EI  + + GE +K+S F  F ++ K  R 
Sbjct: 3  ALTKADMADHLSELTSLNRREAKQMVELFFDEISQALISGEQVKLSGFGNFELRDKRERP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +E+ I  RRVV F+A    ++R+ ++
Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95


>gi|21673134|ref|NP_661199.1| DNA-binding protein HU-alpha, putative [Chlorobium tepidum TLS]
 gi|21646210|gb|AAM71541.1| DNA-binding protein HU-alpha, putative [Chlorobium tepidum TLS]
          Length = 101

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 58/101 (57%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           M +T T++DLV  I++  GL++ ++   V  LF  I DS   G+ I+I  F +F+++ K 
Sbjct: 1   MGQTTTKADLVNVIAQRTGLTKNETESVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKN 60

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
            R  RN +T ++V ++P+ V  FK S   K  + + ++  K
Sbjct: 61  LRQARNPRTGEKVTVEPKNVPTFKISKEFKHAVSESLKANK 101


>gi|301166555|emb|CBW26131.1| integration host factor alpha-subunit (IHF-alpha) [Bacteriovorax
           marinus SJ]
          Length = 137

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 65/112 (58%), Gaps = 2/112 (1%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           ++T++D+V+ + KE G S+K++   V  +F  I D+  RGE +KIS F  F ++ K +RV
Sbjct: 2   SLTKADIVERVYKEAGFSKKEAADLVDLVFKVIKDTLARGEKVKISGFGNFSIRDKATRV 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD--DMRGRKCNKDDVTSPSGS 113
           GRN QT   ++I  RRV+ FK S +LK+ +      R      +D + P+  
Sbjct: 62  GRNPQTGSAMEISARRVLTFKPSQVLKEDVTARFAHRLDDKGNEDTSLPAKE 113


>gi|255263450|ref|ZP_05342792.1| integration host factor, alpha subunit [Thalassiobium sp. R2A62]
 gi|255105785|gb|EET48459.1| integration host factor, alpha subunit [Thalassiobium sp. R2A62]
          Length = 100

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/99 (46%), Positives = 68/99 (68%), Gaps = 1/99 (1%)

Query: 1  MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          MS KT+TR DL +++  E GLSR DS + V ++   + D+ V+GE +KISSF TF V++K
Sbjct: 1  MSEKTLTRMDLSEAVFNEVGLSRNDSAQLVESVLGHMSDALVKGEQVKISSFGTFAVREK 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           +RVGRN +T +EV I PRRV+ F+ S ++K R+    +
Sbjct: 61 AARVGRNPKTGEEVPIHPRRVLTFRPSHLMKDRVAAGNK 99


>gi|194595686|gb|ACF77129.1| bacterial nucleoid DNA-binding protein [Azospirillum brasilense]
          Length = 90

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++   GLS+ D+T+ V  +F+ I DS   GE +++  F TF V ++ +  G
Sbjct: 1  MNKNDLVAHVADAVGLSKTDATKAVDAIFDGIADSLKNGEEVRLVGFGTFAVSERAASEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +++ I   +   FK    LK  + 
Sbjct: 61 RNPRTGEKIAIPASKQPKFKPGKTLKDGLK 90


>gi|167624683|ref|YP_001674977.1| histone family protein DNA-binding protein [Shewanella
          halifaxensis HAW-EB4]
 gi|212636024|ref|YP_002312549.1| histone-like DNA-binding protein [Shewanella piezotolerans WP3]
 gi|167354705|gb|ABZ77318.1| histone family protein DNA-binding protein [Shewanella
          halifaxensis HAW-EB4]
 gi|212557508|gb|ACJ29962.1| Histone-like bacterial DNA-binding protein [Shewanella
          piezotolerans WP3]
          Length = 90

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + +    + D    G+ I +  F TF V+Q+  R G
Sbjct: 1  MNKSELIEKIASGADISKAAAGRALDSFIGAVTDGLKEGDKIALVGFGTFEVRQRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    +  FKA   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANIPAFKAGKALKDAVN 90


>gi|126668934|ref|ZP_01739875.1| Bacterial nucleoid DNA-binding protein [Marinobacter sp. ELB17]
 gi|126626597|gb|EAZ97253.1| Bacterial nucleoid DNA-binding protein [Marinobacter sp. ELB17]
          Length = 90

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I++   +S+  + R +  +   I  +  + + + +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAESADISKAAAGRALDAMTTSITSALKKDDQVTLIGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGAEIQIKASKVPGFKAGKALKDAVK 90


>gi|94971131|ref|YP_593179.1| nucleoid protein Hbs [Candidatus Koribacter versatilis Ellin345]
 gi|94553181|gb|ABF43105.1| bacterial nucleoid protein Hbs [Candidatus Koribacter versatilis
          Ellin345]
          Length = 110

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 54/91 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DL+  +S+   L+RKDS   V T+F+ I  S   G+ I+I  F +F  +Q+  RVG
Sbjct: 1  MTKADLIDEVSRLAELTRKDSEVIVETIFDSIVHSLRAGDKIEIRGFGSFRTRQRKPRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T   V++  +++  FK S  LK  + D
Sbjct: 61 RNPKTGDRVEVPAKKIPFFKPSKELKDMVND 91


>gi|89072100|ref|ZP_01158696.1| DNA-binding protein HU [Photobacterium sp. SKA34]
 gi|90580382|ref|ZP_01236188.1| DNA-binding protein HU [Vibrio angustum S14]
 gi|89052201|gb|EAR57652.1| DNA-binding protein HU [Photobacterium sp. SKA34]
 gi|90438291|gb|EAS63476.1| DNA-binding protein HU [Vibrio angustum S14]
          Length = 91

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLV  I+++  ++++ +T  +  +   I  + + G  + +  F TF V  + +R+G
Sbjct: 1  MNKKDLVSHIAEQADINKEHATAALNAIVESITSALIDGNDVSLVGFGTFKVTHRAARIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + ++I   +   FKA   LK ++ 
Sbjct: 61 RNPKTGEAIQIAASKSPTFKAGKELKAQVN 90


>gi|319407115|emb|CBI80752.1| DNA-binding protein [Bartonella sp. 1-1C]
          Length = 92

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV S++++ G+S+  +   V      + ++   G  ++I  F +F V  + +  G
Sbjct: 1  MNKSELVNSVAEKAGISKAQAGASVDAFIASVTEALASGGDVRIPGFGSFEVSHRAATKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T  E+ I  R V  F A   LK+ + +
Sbjct: 61 RNPSTGAEIIIPARSVPKFSAGKSLKEAVNN 91


>gi|300721652|ref|YP_003710927.1| DNA-binding protein HU-alpha [Xenorhabdus nematophila ATCC 19061]
 gi|297628144|emb|CBJ88695.1| DNA-binding protein HU-alpha (HU-2), plays a role in DNA
          replication and in rpo translation [Xenorhabdus
          nematophila ATCC 19061]
          Length = 90

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+    L++  +   + +  N I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTELVDAIAAGADLTKTQAKAALESTLNAITESLKNGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F A   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFSAGKALKDAVK 90


>gi|332284513|ref|YP_004416424.1| integration host factor beta-subunit [Pusillimonas sp. T7-7]
 gi|330428466|gb|AEC19800.1| integration host factor beta-subunit [Pusillimonas sp. T7-7]
          Length = 106

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 55/96 (57%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+T+++L + +    GL+++++   V T F EI DS  RG  +K+S F  F V+ K  R
Sbjct: 5   RTLTKAELAELLFDRVGLNKREAKDIVDTFFEEIRDSLARGVEVKLSGFGNFQVRDKPPR 64

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            GRN +T + + I  RRVV F AS  LK  +    +
Sbjct: 65  PGRNPKTGEVIPIAARRVVTFHASQKLKTVVESAGK 100


>gi|326795746|ref|YP_004313566.1| Integration host factor subunit alpha [Marinomonas mediterranea
          MMB-1]
 gi|326546510|gb|ADZ91730.1| Integration host factor subunit alpha [Marinomonas mediterranea
          MMB-1]
          Length = 98

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 57/95 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++T++DL +++ +  GL++KD+   V   F  I +S V  E +K+S F  F V++K  R 
Sbjct: 3  SLTKADLAENLVETIGLTKKDAKDLVEGFFQVIRESLVDREQVKLSGFGNFEVREKSQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +E+ I  R VV F+    LK ++ + M+
Sbjct: 63 GRNPKTGEEIPITARTVVTFRPGQKLKAKVENYMQ 97


>gi|169634330|ref|YP_001708066.1| integration host factor subunit alpha [Acinetobacter baumannii
          SDF]
 gi|169797146|ref|YP_001714939.1| integration host factor subunit alpha [Acinetobacter baumannii
          AYE]
 gi|184156927|ref|YP_001845266.1| integration host factor subunit alpha [Acinetobacter baumannii
          ACICU]
 gi|213156063|ref|YP_002318108.1| integration host factor, alpha subunit [Acinetobacter baumannii
          AB0057]
 gi|215484609|ref|YP_002326844.1| integration host factor, alpha subunit [Acinetobacter baumannii
          AB307-0294]
 gi|239500688|ref|ZP_04659998.1| integration host factor subunit alpha [Acinetobacter baumannii
          AB900]
 gi|260551930|ref|ZP_05825792.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624]
 gi|260556048|ref|ZP_05828267.1| integration host factor, alpha subunit [Acinetobacter baumannii
          ATCC 19606]
 gi|262281021|ref|ZP_06058804.1| integration host factor alpha subunit [Acinetobacter
          calcoaceticus RUH2202]
 gi|293610417|ref|ZP_06692718.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|299771523|ref|YP_003733549.1| integration host factor subunit alpha [Acinetobacter sp. DR1]
 gi|301347474|ref|ZP_07228215.1| integration host factor subunit alpha [Acinetobacter baumannii
          AB056]
 gi|301510732|ref|ZP_07235969.1| integration host factor subunit alpha [Acinetobacter baumannii
          AB058]
 gi|301596052|ref|ZP_07241060.1| integration host factor subunit alpha [Acinetobacter baumannii
          AB059]
 gi|332856885|ref|ZP_08436294.1| integration host factor, alpha subunit [Acinetobacter baumannii
          6013150]
 gi|332867212|ref|ZP_08437477.1| integration host factor, alpha subunit [Acinetobacter baumannii
          6013113]
 gi|332873996|ref|ZP_08441931.1| integration host factor, alpha subunit [Acinetobacter baumannii
          6014059]
 gi|226707360|sp|B7GZZ4|IHFA_ACIB3 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226707361|sp|B7I698|IHFA_ACIB5 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226707362|sp|B2HTI2|IHFA_ACIBC RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226707363|sp|B0VV83|IHFA_ACIBS RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226707364|sp|B0V5Q4|IHFA_ACIBY RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226707551|sp|A3M2B0|IHFA_ACIBT RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|169150073|emb|CAM87967.1| integration host factor (IHF), alpha subunit, DNA-binding
          protein, DNA replication [Acinetobacter baumannii AYE]
 gi|169153122|emb|CAP02196.1| integration host factor (IHF), alpha subunit, DNA-binding
          protein, DNA replication [Acinetobacter baumannii]
 gi|183208521|gb|ACC55919.1| Bacterial nucleoid DNA-binding protein [Acinetobacter baumannii
          ACICU]
 gi|193076387|gb|ABO11054.2| integration host factor alpha subunit [Acinetobacter baumannii
          ATCC 17978]
 gi|213055223|gb|ACJ40125.1| integration host factor, alpha subunit [Acinetobacter baumannii
          AB0057]
 gi|213987020|gb|ACJ57319.1| integration host factor, alpha subunit [Acinetobacter baumannii
          AB307-0294]
 gi|260405333|gb|EEW98828.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624]
 gi|260410103|gb|EEX03402.1| integration host factor, alpha subunit [Acinetobacter baumannii
          ATCC 19606]
 gi|262257921|gb|EEY76656.1| integration host factor alpha subunit [Acinetobacter
          calcoaceticus RUH2202]
 gi|292827649|gb|EFF86013.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|298701611|gb|ADI92176.1| integration host factor subunit alpha [Acinetobacter sp. DR1]
 gi|322506823|gb|ADX02277.1| ihfA [Acinetobacter baumannii 1656-2]
 gi|323516692|gb|ADX91073.1| integration host factor subunit alpha [Acinetobacter baumannii
          TCDC-AB0715]
 gi|325124572|gb|ADY84095.1| integration host factor (IHF), alpha subunit, DNA-binding
          protein, DNA replication [Acinetobacter calcoaceticus
          PHEA-2]
 gi|332726939|gb|EGJ58444.1| integration host factor, alpha subunit [Acinetobacter baumannii
          6013150]
 gi|332734151|gb|EGJ65283.1| integration host factor, alpha subunit [Acinetobacter baumannii
          6013113]
 gi|332737737|gb|EGJ68629.1| integration host factor, alpha subunit [Acinetobacter baumannii
          6014059]
          Length = 98

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 57/93 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+   +S+   L+R+++ + V   F+EI  + + GE +K+S F  F ++ K  R 
Sbjct: 3  ALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRERP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +E+ I  RRVV F+A    ++R+ ++
Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95


>gi|261855011|ref|YP_003262294.1| histone family protein DNA-binding protein [Halothiobacillus
          neapolitanus c2]
 gi|261835480|gb|ACX95247.1| histone family protein DNA-binding protein [Halothiobacillus
          neapolitanus c2]
          Length = 90

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++ + G+ + +S   +      + D+  +G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSELIDAMAAKSGMKKTESAAALDAFIEAVGDALKKGDQVTLVGFGTFLVREREARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN ++ + ++I   R+  FKA   LK  + 
Sbjct: 61 RNPRSGETIEIAASRLPSFKAGKGLKDAVN 90


>gi|254469567|ref|ZP_05082972.1| bacterial nucleoid DNA-binding protein [Pseudovibrio sp. JE062]
 gi|211961402|gb|EEA96597.1| bacterial nucleoid DNA-binding protein [Pseudovibrio sp. JE062]
          Length = 91

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++ GL++  +   V   F  I ++   G+ ++I  F  F V  + +  G
Sbjct: 1  MNKNDLIGAVAEKTGLTKAQAGEAVEASFEAITETLKSGDEVRIIGFGNFSVSARAATEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + ++I   +   FKA   LK  + 
Sbjct: 61 RNPRTGETIQIPASKTPKFKAGKGLKDAVN 90


>gi|228476872|ref|ZP_04061517.1| DNA-binding protein HU 1 [Streptococcus salivarius SK126]
 gi|322372800|ref|ZP_08047336.1| DNA-binding protein HU [Streptococcus sp. C150]
 gi|228251446|gb|EEK10591.1| DNA-binding protein HU 1 [Streptococcus salivarius SK126]
 gi|321277842|gb|EFX54911.1| DNA-binding protein HU [Streptococcus sp. C150]
          Length = 91

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 47/89 (52%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  I +    GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFASIEEFLAAGEKVQLIGFGNFEVRERAARQGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT + + I   +V  FKA   LK  + 
Sbjct: 63 NPQTGEAISIAASKVPAFKAGKALKDAVK 91


>gi|258406020|ref|YP_003198762.1| histone family protein DNA-binding protein [Desulfohalobium
          retbaense DSM 5692]
 gi|257798247|gb|ACV69184.1| histone family protein DNA-binding protein [Desulfohalobium
          retbaense DSM 5692]
          Length = 90

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DL+  ++++ GL++ D+ R V      + D+ V+   + ++ F TF V+++ +R G
Sbjct: 1  MTKADLIGKVAEKSGLTKADAERAVNGFLESVEDTLVKEGKLTMTGFGTFSVEERKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT QE+ I   +VV F+   +LK  + 
Sbjct: 61 RNPQTGQEITIPASKVVKFRPGKLLKDAVK 90


>gi|195977763|ref|YP_002123007.1| DNA-binding protein HU [Streptococcus equi subsp. zooepidemicus
          MGCS10565]
 gi|225868935|ref|YP_002744883.1| DNA-binding protein HU [Streptococcus equi subsp. zooepidemicus]
 gi|225870057|ref|YP_002746004.1| DNA-binding protein HU [Streptococcus equi subsp. equi 4047]
 gi|195974468|gb|ACG61994.1| DNA-binding protein HU [Streptococcus equi subsp. zooepidemicus
          MGCS10565]
 gi|225699461|emb|CAW92972.1| DNA-binding protein HU [Streptococcus equi subsp. equi 4047]
 gi|225702211|emb|CAW99942.1| DNA-binding protein HU [Streptococcus equi subsp. zooepidemicus]
          Length = 91

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 49/89 (55%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F+ I      GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFSAIEAFLAEGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E++I   +V  FKA   LK  + 
Sbjct: 63 NPQTGEEIEIAASKVPAFKAGKALKDAVK 91


>gi|126726952|ref|ZP_01742791.1| Histone-like DNA-binding protein (IHF) [Rhodobacterales bacterium
          HTCC2150]
 gi|126703910|gb|EBA03004.1| Histone-like DNA-binding protein (IHF) [Rhodobacterales bacterium
          HTCC2150]
          Length = 100

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/99 (45%), Positives = 66/99 (66%), Gaps = 1/99 (1%)

Query: 1  MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          MS KT+TR DL ++I  E GLSR +S   V ++   + D+ V GE +KISSF TF ++ K
Sbjct: 1  MSEKTLTRVDLSEAIFNEVGLSRNESAALVQSVLQHMSDALVSGENVKISSFGTFSLRDK 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           +RVGRN +T +EV I PRRV+ F+ S+++K R+    +
Sbjct: 61 NARVGRNPKTGEEVPISPRRVLTFRPSNLMKDRVSGQSQ 99


>gi|190575245|ref|YP_001973090.1| integration host factor subunit alpha [Stenotrophomonas
          maltophilia K279a]
 gi|194366572|ref|YP_002029182.1| integration host factor subunit alpha [Stenotrophomonas
          maltophilia R551-3]
 gi|254522974|ref|ZP_05135029.1| integration host factor, alpha subunit [Stenotrophomonas sp.
          SKA14]
 gi|226709756|sp|B4SQG8|IHFA_STRM5 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709757|sp|B2FN73|IHFA_STRMK RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|190013167|emb|CAQ46800.1| putative Integration host factor alpha-subunit [Stenotrophomonas
          maltophilia K279a]
 gi|194349376|gb|ACF52499.1| integration host factor, alpha subunit [Stenotrophomonas
          maltophilia R551-3]
 gi|219720565|gb|EED39090.1| integration host factor, alpha subunit [Stenotrophomonas sp.
          SKA14]
          Length = 99

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 55/91 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  E GL+++++  FV   F+ + ++  +G  +K+S F  F +++K  R 
Sbjct: 2  ALTKAEMAEKLFDEVGLNKREAKEFVDAFFDVLREALEQGRQVKLSGFGNFDLRRKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  R VV F+    LK+R+ 
Sbjct: 62 GRNPKTGEEIPISARTVVTFRPGQKLKERVE 92


>gi|242279078|ref|YP_002991207.1| histone family protein DNA-binding protein [Desulfovibrio
          salexigens DSM 2638]
 gi|242121972|gb|ACS79668.1| histone family protein DNA-binding protein [Desulfovibrio
          salexigens DSM 2638]
          Length = 90

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  I+++ G+++ D+ R +    + + ++ V    + ++ F TF V ++  RVG
Sbjct: 1  MTKAELVVKIAEKAGMTKADAERCLNYFLDTVEETLVNEGKLTLTGFGTFQVDERKERVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E+KI   +VV F+   +LK  + 
Sbjct: 61 RNPRTGEEIKIPACKVVKFRPGKLLKDAVK 90


>gi|194337655|ref|YP_002019449.1| histone family protein DNA-binding protein [Pelodictyon
          phaeoclathratiforme BU-1]
 gi|194310132|gb|ACF44832.1| histone family protein DNA-binding protein [Pelodictyon
          phaeoclathratiforme BU-1]
          Length = 91

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++++LV+ I+ +  L++ D+ R V    N + DS   G+ + +  F TF V ++  R+G
Sbjct: 1  MSKAELVEKIADQAKLTKVDAERAVNAFINVVIDSLKDGDDVTLVGFGTFAVGKRAERLG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I  + VV FK    L+  I
Sbjct: 61 RNPQTGEAITIAAKNVVKFKPGKALRDGI 89


>gi|90407417|ref|ZP_01215601.1| DNA-binding protein [Psychromonas sp. CNPT3]
 gi|90311448|gb|EAS39549.1| DNA-binding protein [Psychromonas sp. CNPT3]
          Length = 91

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  L+ +I++   +S+  ++R +    + +  + V G+ + +  F  F VK + +R G
Sbjct: 1  MNKGQLIDNIAESADISKAAASRALDAFISSVTQALVEGDNVSLIGFGAFTVKDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   ++I   +V  FKA   LK  I 
Sbjct: 61 RNPQTGAPIEIKAAKVPAFKAGKSLKDAIN 90


>gi|306841833|ref|ZP_07474515.1| DNA-binding protein HU [Brucella sp. BO2]
 gi|306843971|ref|ZP_07476566.1| DNA-binding protein HU [Brucella sp. BO1]
 gi|306275726|gb|EFM57450.1| DNA-binding protein HU [Brucella sp. BO1]
 gi|306288060|gb|EFM59457.1| DNA-binding protein HU [Brucella sp. BO2]
          Length = 91

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ GL++ D+   V  +   +  +   GE +++  F  F V  + +  G
Sbjct: 1  MNKNELVAAVAEKGGLTKADAGTAVDAVLASVTAALKAGEEVRLPGFGVFSVSHRAASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T +EV I  R V  F A   LK  +  
Sbjct: 61 RNPSTGKEVDIPARNVPKFSAGKGLKDAVNG 91


>gi|82701627|ref|YP_411193.1| integration host factor subunit alpha [Nitrosospira multiformis
           ATCC 25196]
 gi|123727231|sp|Q2YBS0|IHFA_NITMU RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|82409692|gb|ABB73801.1| integration host factor, alpha subunit [Nitrosospira multiformis
           ATCC 25196]
          Length = 101

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 56/97 (57%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L   + ++ G +++++   V + + E+  +   G+ +K+S F  F ++ K  R 
Sbjct: 2   TLTKAELADLLFEKVGFNKREAKDMVESFYEEVRIALQNGDGVKLSGFGNFQLRDKPQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T +E+ I  RRVV F AS  LK  +  +  G+
Sbjct: 62  GRNPKTGEEIPITARRVVTFHASQKLKAMVEKNQHGK 98


>gi|293392542|ref|ZP_06636862.1| DNA-binding protein HU-beta [Serratia odorifera DSM 4582]
 gi|291424944|gb|EFE98153.1| DNA-binding protein HU-beta [Serratia odorifera DSM 4582]
          Length = 90

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + DS   G+ + +  F +F V+++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTDSLKEGDDVALVGFGSFTVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI   +V  F+A   LK  + 
Sbjct: 61 RNPQTGKEIKIAAAKVPAFRAGKALKDAVN 90


>gi|113461674|ref|YP_719743.1| DNA-binding protein HU [Haemophilus somnus 129PT]
 gi|112823717|gb|ABI25806.1| DNA-binding protein HU [Haemophilus somnus 129PT]
          Length = 91

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+    L++K +   +      I  S   GEA+++  F TF V ++ +R G
Sbjct: 1  MNKTDLIDAIASAAELNKKQAKAALEATLEAISGSLKAGEAVQLIGFGTFKVNERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I   +V  F A   LK  + 
Sbjct: 61 RNPQTGAEIQIAASKVPAFVAGKALKDSVN 90


>gi|163801038|ref|ZP_02194938.1| integration host factor alpha subunit [Vibrio sp. AND4]
 gi|159175387|gb|EDP60184.1| integration host factor alpha subunit [Vibrio sp. AND4]
          Length = 98

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 52/92 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L + +  + G S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAELAEDLFDKLGFSKRDAKETVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARVEN 93


>gi|90417317|ref|ZP_01225243.1| integration host factor, alpha subunit [marine gamma
          proteobacterium HTCC2207]
 gi|90330902|gb|EAS46165.1| integration host factor, alpha subunit [marine gamma
          proteobacterium HTCC2207]
          Length = 99

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 56/92 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL + + +E GL+++++   V   ++EI  +    +++K+S F  F ++ K SR 
Sbjct: 3  ALTKADLAEMLFEELGLNKREAKEIVEMFYSEISLALENNDSVKLSGFGNFELRDKKSRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +E+ I  RRVV FK    LK R+ +
Sbjct: 63 GRNPKTGEEIPISARRVVTFKPGQKLKARVEN 94


>gi|56460501|ref|YP_155782.1| nucleoid DNA-binding protein, IHF alpha subunit [Idiomarina
          loihiensis L2TR]
 gi|81678356|sp|Q5QXL9|IHFA_IDILO RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|56179511|gb|AAV82233.1| Bacterial nucleoid DNA-binding protein, IHF alpha subunit
          [Idiomarina loihiensis L2TR]
          Length = 98

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 54/93 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L + +  ++G+S++D+   V   F EI  +  RGE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAELAEVLFDKYGVSKQDAKVLVEDFFEEIRVALERGEQVKLSGFGNFELRTKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +E+ I  RRVV FK     K R+ + 
Sbjct: 62 GRNPKTGEEIPISARRVVTFKPGQKFKSRVENA 94


>gi|26989194|ref|NP_744619.1| integration host factor subunit alpha [Pseudomonas putida KT2440]
 gi|148548427|ref|YP_001268529.1| integration host factor subunit alpha [Pseudomonas putida F1]
 gi|167034471|ref|YP_001669702.1| integration host factor subunit alpha [Pseudomonas putida GB-1]
 gi|170721157|ref|YP_001748845.1| integration host factor subunit alpha [Pseudomonas putida W619]
 gi|325276804|ref|ZP_08142506.1| integration host factor subunit alpha [Pseudomonas sp. TJI-51]
 gi|60392431|sp|P0A126|IHFA_PSEPK RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|60392432|sp|P0A127|IHFA_PSEPU RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|166918517|sp|A5W5D5|IHFA_PSEP1 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|189044704|sp|B0KKR2|IHFA_PSEPG RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709741|sp|B1J6V0|IHFA_PSEPW RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|24984034|gb|AAN68083.1|AE016440_3 integration host factor, alpha subunit [Pseudomonas putida
          KT2440]
 gi|1435199|gb|AAB04060.1| IhfA [Pseudomonas putida]
 gi|148512485|gb|ABQ79345.1| integration host factor, alpha subunit [Pseudomonas putida F1]
 gi|166860959|gb|ABY99366.1| integration host factor, alpha subunit [Pseudomonas putida GB-1]
 gi|169759160|gb|ACA72476.1| integration host factor, alpha subunit [Pseudomonas putida W619]
 gi|324098064|gb|EGB96208.1| integration host factor subunit alpha [Pseudomonas sp. TJI-51]
          Length = 100

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 52/91 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +E GL+++++   V   F EI  +    E +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEMAERLYEELGLNKREAKELVELFFEEIRHALEENEQVKLSGFGNFDLRDKRQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  RRVV F+    LK R+ 
Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARVE 93


>gi|325264325|ref|ZP_08131056.1| DNA-binding protein HU [Clostridium sp. D5]
 gi|324030396|gb|EGB91680.1| DNA-binding protein HU [Clostridium sp. D5]
          Length = 91

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+++  +S+KDS + +    + + D   +G+ +++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAIAEKAEISKKDSEKALKAFIDVVSDQLKKGDKVQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI   +   FKA   LK  + 
Sbjct: 61 RNPQTGKTMKIAACKAPKFKAGKALKDEVN 90


>gi|90021780|ref|YP_527607.1| hypothetical protein Sde_2135 [Saccharophagus degradans 2-40]
 gi|123396041|sp|Q21IT4|IHFB_SACD2 RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|89951380|gb|ABD81395.1| integration host factor, beta subunit [Saccharophagus degradans
           2-40]
          Length = 98

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 1/97 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L++ I++    LS KD    V  +   +  +   GE I+I  F +F +  +  R 
Sbjct: 1   MTKSELIERIAERQDQLSAKDIELAVKLVLEYMSQALSTGERIEIRGFGSFSLHFRAPRT 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T + V +  + V  FK    ++ R+ + ++  
Sbjct: 61  GRNPKTGESVTLPGKYVPHFKPGKEMRDRVNESIQSE 97


>gi|146319301|ref|YP_001199013.1| nucleoid DNA-binding protein [Streptococcus suis 05ZYH33]
 gi|146321504|ref|YP_001201215.1| nucleoid DNA-binding protein [Streptococcus suis 98HAH33]
 gi|223932925|ref|ZP_03624920.1| histone family protein DNA-binding protein [Streptococcus suis
          89/1591]
 gi|253752334|ref|YP_003025475.1| DNA-binding protein HU [Streptococcus suis SC84]
 gi|253754160|ref|YP_003027301.1| DNA-binding protein HU [Streptococcus suis P1/7]
 gi|253756094|ref|YP_003029234.1| DNA-binding protein HU [Streptococcus suis BM407]
 gi|330833271|ref|YP_004402096.1| nucleoid DNA-binding protein [Streptococcus suis ST3]
 gi|145690107|gb|ABP90613.1| nucleoid DNA-binding protein [Streptococcus suis 05ZYH33]
 gi|145692310|gb|ABP92815.1| nucleoid DNA-binding protein [Streptococcus suis 98HAH33]
 gi|223898371|gb|EEF64737.1| histone family protein DNA-binding protein [Streptococcus suis
          89/1591]
 gi|251816623|emb|CAZ52263.1| DNA-binding protein HU [Streptococcus suis SC84]
 gi|251818558|emb|CAZ56391.1| DNA-binding protein HU [Streptococcus suis BM407]
 gi|251820406|emb|CAR47035.1| DNA-binding protein HU [Streptococcus suis P1/7]
 gi|292558933|gb|ADE31934.1| Histone-like bacterial DNA-binding protein [Streptococcus suis
          GZ1]
 gi|329307494|gb|AEB81910.1| nucleoid DNA-binding protein [Streptococcus suis ST3]
          Length = 91

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 48/89 (53%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + D    GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATSLTKKDSAAAVDAVFGAVADYLAAGEKVQLIGFGNFEVRERSARTGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E+KI   +V  FKA   LK  + 
Sbjct: 63 NPQTGAEIKIAASKVPAFKAGKALKDAVK 91


>gi|110633525|ref|YP_673733.1| histone-like DNA-binding protein [Mesorhizobium sp. BNC1]
 gi|110284509|gb|ABG62568.1| bacterial nucleoid protein Hbs [Chelativorans sp. BNC1]
          Length = 90

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ GLS+ D+   V  +F+ I      G  +++  F  F V ++ +  G
Sbjct: 1  MNKNELVSAVAEKAGLSKGDAQSAVDAVFSVITGELKSGGDVRLVGFGNFSVSRREASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  EVKI  R V  F A   LK  I 
Sbjct: 61 RNPQTGAEVKIPARNVPKFSAGKGLKDAIN 90


>gi|15641921|ref|NP_231553.1| DNA-binding protein HU-beta [Vibrio cholerae O1 biovar El Tor
          str. N16961]
 gi|121591617|ref|ZP_01678865.1| DNA-binding protein HU-beta [Vibrio cholerae 2740-80]
 gi|121727834|ref|ZP_01680901.1| DNA-binding protein HU-beta [Vibrio cholerae V52]
 gi|147673385|ref|YP_001217452.1| DNA-binding protein HU-beta [Vibrio cholerae O395]
 gi|153820106|ref|ZP_01972773.1| DNA-binding protein HU-beta [Vibrio cholerae NCTC 8457]
 gi|153823843|ref|ZP_01976510.1| DNA-binding protein HU-beta [Vibrio cholerae B33]
 gi|153827659|ref|ZP_01980326.1| DNA-binding protein HU-beta [Vibrio cholerae MZO-2]
 gi|183179757|ref|ZP_02957968.1| DNA-binding protein HU-beta [Vibrio cholerae MZO-3]
 gi|227082049|ref|YP_002810600.1| DNA-binding protein HU-beta [Vibrio cholerae M66-2]
 gi|229507985|ref|ZP_04397490.1| DNA-binding protein HU-beta [Vibrio cholerae BX 330286]
 gi|229511778|ref|ZP_04401257.1| DNA-binding protein HU-beta [Vibrio cholerae B33]
 gi|229515305|ref|ZP_04404765.1| DNA-binding protein HU-beta [Vibrio cholerae TMA 21]
 gi|229518915|ref|ZP_04408358.1| DNA-binding protein HU-beta [Vibrio cholerae RC9]
 gi|229521841|ref|ZP_04411258.1| DNA-binding protein HU-beta [Vibrio cholerae TM 11079-80]
 gi|229523939|ref|ZP_04413344.1| DNA-binding protein HU-beta [Vibrio cholerae bv. albensis VL426]
 gi|229529055|ref|ZP_04418445.1| DNA-binding protein HU-beta [Vibrio cholerae 12129(1)]
 gi|229607531|ref|YP_002878179.1| DNA-binding protein HU-beta [Vibrio cholerae MJ-1236]
 gi|254286720|ref|ZP_04961674.1| DNA-binding protein HU-beta [Vibrio cholerae AM-19226]
 gi|254849007|ref|ZP_05238357.1| DNA-binding protein HU-beta [Vibrio cholerae MO10]
 gi|255745322|ref|ZP_05419271.1| DNA-binding protein HU-beta [Vibrio cholera CIRS 101]
 gi|258621305|ref|ZP_05716339.1| DNA-binding protein HU-beta [Vibrio mimicus VM573]
 gi|258625371|ref|ZP_05720268.1| DNA-binding protein HU-beta [Vibrio mimicus VM603]
 gi|262156046|ref|ZP_06029166.1| DNA-binding protein HU-beta [Vibrio cholerae INDRE 91/1]
 gi|262166049|ref|ZP_06033786.1| DNA-binding protein HU-beta [Vibrio mimicus VM223]
 gi|262167881|ref|ZP_06035581.1| DNA-binding protein HU-beta [Vibrio cholerae RC27]
 gi|262171086|ref|ZP_06038764.1| DNA-binding protein HU-beta [Vibrio mimicus MB-451]
 gi|262404272|ref|ZP_06080827.1| DNA-binding protein HU-beta [Vibrio sp. RC586]
 gi|297579437|ref|ZP_06941365.1| DNA-binding protein HU-beta [Vibrio cholerae RC385]
 gi|298498043|ref|ZP_07007850.1| DNA-binding protein HU-beta [Vibrio cholerae MAK 757]
 gi|14194651|sp|Q9KQS9|DBHB_VIBCH RecName: Full=DNA-binding protein HU-beta
 gi|9656454|gb|AAF95067.1| DNA-binding protein HU-beta [Vibrio cholerae O1 biovar El Tor
          str. N16961]
 gi|121546530|gb|EAX56738.1| DNA-binding protein HU-beta [Vibrio cholerae 2740-80]
 gi|121629870|gb|EAX62284.1| DNA-binding protein HU-beta [Vibrio cholerae V52]
 gi|126509348|gb|EAZ71942.1| DNA-binding protein HU-beta [Vibrio cholerae NCTC 8457]
 gi|126518640|gb|EAZ75863.1| DNA-binding protein HU-beta [Vibrio cholerae B33]
 gi|146315268|gb|ABQ19807.1| DNA-binding protein HU-beta [Vibrio cholerae O395]
 gi|149737865|gb|EDM52770.1| DNA-binding protein HU-beta [Vibrio cholerae MZO-2]
 gi|150423147|gb|EDN15094.1| DNA-binding protein HU-beta [Vibrio cholerae AM-19226]
 gi|183013168|gb|EDT88468.1| DNA-binding protein HU-beta [Vibrio cholerae MZO-3]
 gi|227009937|gb|ACP06149.1| DNA-binding protein HU-beta [Vibrio cholerae M66-2]
 gi|227013817|gb|ACP10027.1| DNA-binding protein HU-beta [Vibrio cholerae O395]
 gi|229332829|gb|EEN98315.1| DNA-binding protein HU-beta [Vibrio cholerae 12129(1)]
 gi|229337520|gb|EEO02537.1| DNA-binding protein HU-beta [Vibrio cholerae bv. albensis VL426]
 gi|229340766|gb|EEO05771.1| DNA-binding protein HU-beta [Vibrio cholerae TM 11079-80]
 gi|229343604|gb|EEO08579.1| DNA-binding protein HU-beta [Vibrio cholerae RC9]
 gi|229348010|gb|EEO12969.1| DNA-binding protein HU-beta [Vibrio cholerae TMA 21]
 gi|229351743|gb|EEO16684.1| DNA-binding protein HU-beta [Vibrio cholerae B33]
 gi|229355490|gb|EEO20411.1| DNA-binding protein HU-beta [Vibrio cholerae BX 330286]
 gi|229370186|gb|ACQ60609.1| DNA-binding protein HU-beta [Vibrio cholerae MJ-1236]
 gi|254844712|gb|EET23126.1| DNA-binding protein HU-beta [Vibrio cholerae MO10]
 gi|255737152|gb|EET92548.1| DNA-binding protein HU-beta [Vibrio cholera CIRS 101]
 gi|258582362|gb|EEW07214.1| DNA-binding protein HU-beta [Vibrio mimicus VM603]
 gi|258586693|gb|EEW11408.1| DNA-binding protein HU-beta [Vibrio mimicus VM573]
 gi|261892162|gb|EEY38148.1| DNA-binding protein HU-beta [Vibrio mimicus MB-451]
 gi|262023608|gb|EEY42309.1| DNA-binding protein HU-beta [Vibrio cholerae RC27]
 gi|262025765|gb|EEY44433.1| DNA-binding protein HU-beta [Vibrio mimicus VM223]
 gi|262030224|gb|EEY48868.1| DNA-binding protein HU-beta [Vibrio cholerae INDRE 91/1]
 gi|262349304|gb|EEY98442.1| DNA-binding protein HU-beta [Vibrio sp. RC586]
 gi|297537031|gb|EFH75864.1| DNA-binding protein HU-beta [Vibrio cholerae RC385]
 gi|297542376|gb|EFH78426.1| DNA-binding protein HU-beta [Vibrio cholerae MAK 757]
 gi|327484463|gb|AEA78870.1| DNA-binding protein HU-beta [Vibrio cholerae LMA3894-4]
          Length = 90

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 45/88 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I+    +S+  + R +      +  +   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVEQIAANADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN +T +E+KI   +V  FKA   LK  
Sbjct: 61 RNPKTGEEIKIAEAKVPSFKAGKALKDA 88


>gi|171778666|ref|ZP_02919762.1| hypothetical protein STRINF_00614 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
 gi|306833010|ref|ZP_07466142.1| DNA-binding protein HU [Streptococcus bovis ATCC 700338]
 gi|320546358|ref|ZP_08040675.1| DNA-binding protein HU [Streptococcus equinus ATCC 9812]
 gi|171282623|gb|EDT48047.1| hypothetical protein STRINF_00614 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
 gi|304424909|gb|EFM28043.1| DNA-binding protein HU [Streptococcus bovis ATCC 700338]
 gi|320449012|gb|EFW89738.1| DNA-binding protein HU [Streptococcus equinus ATCC 9812]
          Length = 91

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 49/89 (55%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F+ I      GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAVAVDAVFSAIESFLSEGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E++I   +V  FKA   LK  + 
Sbjct: 63 NPQTGEEIEIAASKVPAFKAGKALKDAVK 91


>gi|84387738|ref|ZP_00990754.1| Bacterial nucleoid DNA-binding protein [Vibrio splendidus 12B01]
 gi|86148519|ref|ZP_01066807.1| Bacterial nucleoid DNA-binding protein [Vibrio sp. MED222]
 gi|148977891|ref|ZP_01814444.1| bacterial nucleoid DNA-binding protein [Vibrionales bacterium
          SWAT-3]
 gi|84377421|gb|EAP94288.1| Bacterial nucleoid DNA-binding protein [Vibrio splendidus 12B01]
 gi|85833710|gb|EAQ51880.1| Bacterial nucleoid DNA-binding protein [Vibrio sp. MED222]
 gi|145962837|gb|EDK28109.1| bacterial nucleoid DNA-binding protein [Vibrionales bacterium
          SWAT-3]
          Length = 90

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 47/88 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+SI++   +S+  + R +      +  +   G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTQLVESIAENADISKASAGRALDAFIEAVGTTLQSGDQVALVGFGTFSVRTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN +T +E++I   +V  FKA   LK  
Sbjct: 61 RNPKTGEEIQIAEAKVPGFKAGKALKDA 88


>gi|104781112|ref|YP_607610.1| integration host factor subunit alpha [Pseudomonas entomophila
          L48]
 gi|123079215|sp|Q1IC09|IHFA_PSEE4 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|95110099|emb|CAK14804.1| integration host factor (IHF), alpha subunit, DNA-binding
          protein, DNA replication [Pseudomonas entomophila L48]
          Length = 100

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 52/91 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +E GL+++++   V   F EI  +    E +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEMAERLYEELGLNKREAKELVELFFEEIRHALEDNEQVKLSGFGNFDLRDKRQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  RRVV F+    LK R+ 
Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARVE 93


>gi|119356262|ref|YP_910906.1| histone family protein DNA-binding protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353611|gb|ABL64482.1| histone family protein DNA-binding protein [Chlorobium
           phaeobacteroides DSM 266]
          Length = 102

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 56/101 (55%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           M  T T++DLV  I+   GL++ ++   V  LF  I DS   G+ I+I  F +F+++ K 
Sbjct: 1   MGTTTTKADLVNVIAHRTGLTKNETEAVVDCLFESIIDSLKSGKRIEIRGFGSFNIRHKN 60

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
            R  RN +T ++V +DP+ V  FK S   K  + + ++  +
Sbjct: 61  LRQARNPRTGEKVTVDPKNVPTFKISKEFKHAVSESLKNGQ 101


>gi|313889131|ref|ZP_07822787.1| DNA-binding protein HU [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844871|gb|EFR32276.1| DNA-binding protein HU [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 92

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV SI+++ GL++KD+ + +    + + ++   GE +++  F TF V+Q+ +R G
Sbjct: 1  MNKSELVASIAEKSGLTKKDAEQALNGFISSVQEALADGEKVQLVGFGTFEVRQRKAREG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95
          RN +  +E +KI   +  VF++   LK+ +  
Sbjct: 61 RNPRNPEEVIKIPASKAPVFRSGKALKEAVNK 92


>gi|15837345|ref|NP_298033.1| integration host factor subunit alpha [Xylella fastidiosa 9a5c]
 gi|14194874|sp|Q9PFD5|IHFA_XYLFA RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|9105633|gb|AAF83553.1|AE003916_7 integration host factor, alpha subunit [Xylella fastidiosa 9a5c]
          Length = 99

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 60/98 (61%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++V+ +  E GL+++++  FV T F+ + D+  +G  IK+S F  F ++ K  R 
Sbjct: 2   ALTKAEMVERLFDEVGLNKREAKEFVDTFFDLLRDALEQGRQIKLSGFGNFELRCKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +E+ I  R VV F++   LK+R+   +  R+
Sbjct: 62  GRNPKTGEEIPISARTVVTFRSGQKLKERVDAYVGSRQ 99


>gi|197284918|ref|YP_002150790.1| integration host factor subunit alpha [Proteus mirabilis HI4320]
 gi|227355321|ref|ZP_03839722.1| integration host factor alpha-subunit [Proteus mirabilis ATCC
          29906]
 gi|226709739|sp|B4ETL2|IHFA_PROMH RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|194682405|emb|CAR42265.1| integration host factor alpha-subunit [Proteus mirabilis HI4320]
 gi|227164545|gb|EEI49416.1| integration host factor alpha-subunit [Proteus mirabilis ATCC
          29906]
          Length = 98

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 55/95 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ +++ ++ G+S++D+   V   F E+  S   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAENLFEKLGVSKRDAKDLVEAFFEEVRRSLENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +++ I  RRVV F+    LK R+ +   
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENATP 96


>gi|193213517|ref|YP_001999470.1| histone family protein DNA-binding protein [Chlorobaculum parvum
          NCIB 8327]
 gi|193086994|gb|ACF12270.1| histone family protein DNA-binding protein [Chlorobaculum parvum
          NCIB 8327]
          Length = 91

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++++LV+ I+ E G+++ ++ R V    N +  +   G+ + +  F TF    +  R G
Sbjct: 1  MSKAELVEQIAAETGMTKAEAERAVNAFINVVTSTLKGGDDVTLVGFGTFTTGDRAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I  ++VV FK    LK  I
Sbjct: 61 RNPQTGETITIAAKKVVKFKPGKALKDEI 89


>gi|121997401|ref|YP_001002188.1| histone family protein DNA-binding protein [Halorhodospira
          halophila SL1]
 gi|121588806|gb|ABM61386.1| histone family protein DNA-binding protein [Halorhodospira
          halophila SL1]
          Length = 90

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++++    LS+  + R V  +   + D+   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSELIEAVADSADLSKAAAARAVDAMVESVTDALREGDQVTLVGFGTFTVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I   +V  FK    LK  I 
Sbjct: 61 RNPRTGESIDIPASKVPGFKPGKALKDAIN 90


>gi|254501804|ref|ZP_05113955.1| integration host factor, beta subunit [Labrenzia alexandrii
          DFL-11]
 gi|222437875|gb|EEE44554.1| integration host factor, beta subunit [Labrenzia alexandrii
          DFL-11]
          Length = 99

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 58/94 (61%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I+++   L ++D    V  + +EI ++ +RG+ +++  F  F VK + +R+
Sbjct: 1  MIKSELVQHIAEQNPHLYQRDVENIVNAILDEITEALMRGDRVELRGFGAFSVKNRPARI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T Q+V++D + V  FK    ++ R+ D +
Sbjct: 61 GRNPRTGQKVEVDEKHVPFFKTGKEMRIRLNDGV 94


>gi|210613799|ref|ZP_03289913.1| hypothetical protein CLONEX_02124 [Clostridium nexile DSM 1787]
 gi|210151008|gb|EEA82016.1| hypothetical protein CLONEX_02124 [Clostridium nexile DSM 1787]
          Length = 91

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ + +I+++  LS+KD+ + +    + + +   +GE I++  F TF V ++ +R G
Sbjct: 1  MNKTEFISAIAEKAELSKKDAEKALKAFTDVVEEELKKGEKIQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI+  +   FKA   LK  + 
Sbjct: 61 RNPQTGETMKIEACKAPKFKAGKALKDAVN 90


>gi|319786727|ref|YP_004146202.1| integration host factor subunit alpha [Pseudoxanthomonas
          suwonensis 11-1]
 gi|317465239|gb|ADV26971.1| integration host factor, alpha subunit [Pseudoxanthomonas
          suwonensis 11-1]
          Length = 101

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 54/91 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + +  E GL+++++  FV   F+ + ++   G  +K+S F  F +++K  R 
Sbjct: 2  ALTKAEMAERLFDEVGLNKREAKEFVDAFFDVLREALQDGRQVKLSGFGNFDLRRKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  R VV F+    LK+R+ 
Sbjct: 62 GRNPKTGEEIPISARTVVTFRPGQKLKERVE 92


>gi|261211051|ref|ZP_05925341.1| integration host factor alpha subunit [Vibrio sp. RC341]
 gi|262402428|ref|ZP_06078989.1| integration host factor alpha subunit [Vibrio sp. RC586]
 gi|260840026|gb|EEX66626.1| integration host factor alpha subunit [Vibrio sp. RC341]
 gi|262351210|gb|EEZ00343.1| integration host factor alpha subunit [Vibrio sp. RC586]
          Length = 98

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 55/92 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L +++ ++ G+S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAELAEALFEKLGMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARVEN 93


>gi|237807858|ref|YP_002892298.1| histone family protein DNA-binding protein [Tolumonas auensis DSM
          9187]
 gi|237500119|gb|ACQ92712.1| histone family protein DNA-binding protein [Tolumonas auensis DSM
          9187]
          Length = 90

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S LV  IS+   +S+  + R +      + ++   G+ + +  F TF V+++ SR G
Sbjct: 1  MNKSQLVDKISESADISKAAAGRALDAFIEAVGEALKDGDQVSLVGFGTFAVRERASRSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   ++I   +   FKA   LK  + 
Sbjct: 61 RNPQTGATIEIAACKQPAFKAGKALKDSVN 90


>gi|114563759|ref|YP_751272.1| histone family protein DNA-binding protein [Shewanella
          frigidimarina NCIMB 400]
 gi|114335052|gb|ABI72434.1| histone family protein DNA-binding protein [Shewanella
          frigidimarina NCIMB 400]
          Length = 91

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + +    + +    G+ I +  F TF V+Q+  R G
Sbjct: 1  MNKSELIEKIASGADISKAAAGRALDSFIAAVTEGLKDGDKISLVGFGTFEVRQRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    +  FKA   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANIPAFKAGKALKDAVN 90


>gi|17987160|ref|NP_539794.1| DNA-binding protein HU-alpha [Brucella melitensis bv. 1 str. 16M]
 gi|225627579|ref|ZP_03785616.1| DNA-binding protein HRL18 [Brucella ceti str. Cudo]
 gi|237815529|ref|ZP_04594526.1| DNA-binding protein HRL18 [Brucella abortus str. 2308 A]
 gi|294852445|ref|ZP_06793118.1| DNA-binding protein HU-beta [Brucella sp. NVSL 07-0026]
 gi|17982826|gb|AAL52058.1| DNA-binding protein hu-alpha [Brucella melitensis bv. 1 str. 16M]
 gi|225617584|gb|EEH14629.1| DNA-binding protein HRL18 [Brucella ceti str. Cudo]
 gi|237788827|gb|EEP63038.1| DNA-binding protein HRL18 [Brucella abortus str. 2308 A]
 gi|294821034|gb|EFG38033.1| DNA-binding protein HU-beta [Brucella sp. NVSL 07-0026]
          Length = 93

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ GL++ D+   V  +   +  +   GE +++  F  F V  + +  G
Sbjct: 3  MNKNELVAAVAEKGGLTKADAGTAVDAVLASVTAALKAGEEVRLPGFGVFSVSHRAASTG 62

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T +EV I  R V  F A   LK  +  
Sbjct: 63 RNPSTGKEVAIPARNVPKFSAGKGLKDAVNG 93


>gi|300721988|ref|YP_003711268.1| DNA-binding protein HU-beta, NS1 [Xenorhabdus nematophila ATCC
          19061]
 gi|297628485|emb|CBJ89050.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Xenorhabdus
          nematophila ATCC 19061]
          Length = 96

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+ +  +S+  + R V    + + ++   G+ + +  F TF V+++ +R G
Sbjct: 6  VNKSQLIDKIAADVNISKAAAGRVVDAFISSVSEALKDGDDVALVGFGTFSVRERAARTG 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI   +V  F++   LK  + 
Sbjct: 66 RNPQTGKEIKIAAAKVPAFRSGKGLKDAVN 95


>gi|295398577|ref|ZP_06808609.1| DNA-binding protein HU [Aerococcus viridans ATCC 11563]
 gi|294973178|gb|EFG48973.1| DNA-binding protein HU [Aerococcus viridans ATCC 11563]
          Length = 106

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
            +++LV++++   G S+K     V  +F +I      GE +++  F +F V+ + +R GR
Sbjct: 18  NKAELVQNVANAVGDSKKSVAPVVDAVFEQIEAFLADGEKVQLIGFGSFEVRDRAARKGR 77

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N QT  E++I   +V  FK    LK  + 
Sbjct: 78  NPQTGDEIEIPASKVPAFKPGKALKDAVK 106


>gi|28199777|ref|NP_780091.1| integration host factor subunit alpha [Xylella fastidiosa
           Temecula1]
 gi|71275161|ref|ZP_00651448.1| Integration host factor, alpha subunit [Xylella fastidiosa Dixon]
 gi|71898242|ref|ZP_00680416.1| Integration host factor, alpha subunit [Xylella fastidiosa Ann-1]
 gi|71901128|ref|ZP_00683234.1| Integration host factor, alpha subunit [Xylella fastidiosa Ann-1]
 gi|170731152|ref|YP_001776585.1| integration host factor subunit alpha [Xylella fastidiosa M12]
 gi|182682527|ref|YP_001830687.1| integration host factor subunit alpha [Xylella fastidiosa M23]
 gi|32129614|sp|Q87AB7|IHFA_XYLFT RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|226709761|sp|B2I9P2|IHFA_XYLF2 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|226709762|sp|B0U5D7|IHFA_XYLFM RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|28057898|gb|AAO29740.1| integration host factor, alpha subunit [Xylella fastidiosa
           Temecula1]
 gi|71163970|gb|EAO13685.1| Integration host factor, alpha subunit [Xylella fastidiosa Dixon]
 gi|71729092|gb|EAO31217.1| Integration host factor, alpha subunit [Xylella fastidiosa Ann-1]
 gi|71731981|gb|EAO34038.1| Integration host factor, alpha subunit [Xylella fastidiosa Ann-1]
 gi|167965945|gb|ACA12955.1| integration host factor, alpha subunit [Xylella fastidiosa M12]
 gi|182632637|gb|ACB93413.1| integration host factor, alpha subunit [Xylella fastidiosa M23]
 gi|307578805|gb|ADN62774.1| integration host factor subunit alpha [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 99

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 60/98 (61%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++V+ +  E GL+++++  FV   F+ + D+  +G+ IK+S F  F ++ K  R 
Sbjct: 2   ALTKAEMVERLFDEVGLNKREAKEFVDAFFDLLRDALEQGKEIKLSGFGNFELRCKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +E+ I  R VV F++   LK+R+   +  R+
Sbjct: 62  GRNPKTGEEIPISARTVVTFRSGQKLKERVDAYVGSRQ 99


>gi|71276514|ref|ZP_00652789.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
          Dixon]
 gi|71901996|ref|ZP_00684043.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
          Ann-1]
 gi|170729735|ref|YP_001775168.1| histone-like protein [Xylella fastidiosa M12]
 gi|71162691|gb|EAO12418.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
          Dixon]
 gi|71728241|gb|EAO30425.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
          Ann-1]
 gi|167964528|gb|ACA11538.1| histone-like protein [Xylella fastidiosa M12]
          Length = 94

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 47/92 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++    LS+ ++ R +  + NEI ++  +G+++ +  F TF V+ +  R G
Sbjct: 1  MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKKGDSVTLVGFGTFQVRPRAERPG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN ++ + + I       FK    LK  +   
Sbjct: 61 RNPKSGEPIMIAASNNPSFKPGKALKDAVKSS 92


>gi|229106597|ref|ZP_04236839.1| DNA-binding protein HU [Bacillus cereus Rock3-28]
 gi|228676835|gb|EEL31439.1| DNA-binding protein HU [Bacillus cereus Rock3-28]
          Length = 93

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 53/92 (57%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +++L+K ++ +  L++KD+      + + I ++    E ++I  F TF V+++ +R
Sbjct: 2  QKMNKTELIKVVADKAELTQKDAATATQAVLDAITNTLANEEKVQILGFGTFEVRERSAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E++I   +   FKA   LK+ + 
Sbjct: 62 TGRNPQTGEEIQIAASKAPAFKAGKELKEAVK 93


>gi|114568651|ref|YP_755331.1| integration host factor subunit beta [Maricaulis maris MCS10]
 gi|122317015|sp|Q0ATJ4|IHFB_MARMM RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|114339113|gb|ABI64393.1| integration host factor, beta subunit [Maricaulis maris MCS10]
          Length = 101

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 1/98 (1%)

Query: 5   ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+L+  +++    L  +D  R V T+ + I D+  RGE +++  F  F V+ + +RV
Sbjct: 1   MIKSELIDQLAEANPHLYHRDVERVVNTILDGITDALARGERVELRGFGAFSVRHRPARV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T + V +  + V  FK    L++R+        
Sbjct: 61  GRNPRTGESVAVKEKHVPFFKTGKELRERVDASRESNP 98


>gi|262369831|ref|ZP_06063158.1| integration host factor alpha subunit [Acinetobacter johnsonii
          SH046]
 gi|262314870|gb|EEY95910.1| integration host factor alpha subunit [Acinetobacter johnsonii
          SH046]
          Length = 98

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 57/93 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++   +S+   L+R+++ + V   F+EI  + + GE +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEMADHLSELTSLNRREAKQMVELFFDEISQALISGEQVKLSGFGNFELRDKRQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +E+ I  RRVV F+A    ++R+ ++
Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95


>gi|167855819|ref|ZP_02478571.1| DNA-binding protein HU [Haemophilus parasuis 29755]
 gi|219871002|ref|YP_002475377.1| DNA-binding protein HU/transcriptional regulator [Haemophilus
          parasuis SH0165]
 gi|167853032|gb|EDS24294.1| DNA-binding protein HU [Haemophilus parasuis 29755]
 gi|219691206|gb|ACL32429.1| DNA-binding protein HU/transcriptional regulator [Haemophilus
          parasuis SH0165]
          Length = 90

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+    LS+KD+   +    N I +S  +G+++++  F TF V  + +R G
Sbjct: 1  MNKTELVDAIAAGADLSKKDAKAALEATLNAISESLKKGDSVQLIGFGTFKVNHRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +TN+ ++I    V  F A   LK  + 
Sbjct: 61 RNPKTNEAIEIPAANVPAFVAGKALKDLVK 90


>gi|167032913|ref|YP_001668144.1| histone family protein DNA-binding protein [Pseudomonas putida
          GB-1]
 gi|166859401|gb|ABY97808.1| histone family protein DNA-binding protein [Pseudomonas putida
          GB-1]
          Length = 90

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  +   +  +  +G+ + +  F TF VK +  R G
Sbjct: 1  MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTFSVKDRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI+  +V  FKA   LK  + 
Sbjct: 61 RNPQTGKAIKIEAAKVPGFKAGKGLKDAVN 90


>gi|256005929|ref|ZP_05430873.1| histone family protein DNA-binding protein [Clostridium
          thermocellum DSM 2360]
 gi|281416578|ref|ZP_06247598.1| histone family protein DNA-binding protein [Clostridium
          thermocellum JW20]
 gi|255990100|gb|EEU00238.1| histone family protein DNA-binding protein [Clostridium
          thermocellum DSM 2360]
 gi|281407980|gb|EFB38238.1| histone family protein DNA-binding protein [Clostridium
          thermocellum JW20]
 gi|316939684|gb|ADU73718.1| histone family protein DNA-binding protein [Clostridium
          thermocellum DSM 1313]
          Length = 91

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ SI+ + GLS+K+S   +      + ++  +G+ + +  F TF VK + +R G
Sbjct: 1  MNKTELINSIASKSGLSKKNSEAALNAFIASVEEALKKGDKVVLVGFGTFEVKNRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E+ I   +  VFKA   LK  +  
Sbjct: 61 RNPQTKEEITIPASKAPVFKAGKGLKDIVNK 91


>gi|28869581|ref|NP_792200.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          tomato str. DC3000]
 gi|66045408|ref|YP_235249.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          syringae B728a]
 gi|70729487|ref|YP_259225.1| integration host factor subunit alpha [Pseudomonas fluorescens
          Pf-5]
 gi|71737728|ref|YP_274360.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|77458164|ref|YP_347669.1| integration host factor subunit alpha [Pseudomonas fluorescens
          Pf0-1]
 gi|213970489|ref|ZP_03398616.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          tomato T1]
 gi|229591573|ref|YP_002873692.1| integration host factor subunit alpha [Pseudomonas fluorescens
          SBW25]
 gi|237801009|ref|ZP_04589470.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          oryzae str. 1_6]
 gi|257486166|ref|ZP_05640207.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          tabaci ATCC 11528]
 gi|289623630|ref|ZP_06456584.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          aesculi str. NCPPB3681]
 gi|289647152|ref|ZP_06478495.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          aesculi str. 2250]
 gi|289673310|ref|ZP_06494200.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          syringae FF5]
 gi|298486707|ref|ZP_07004764.1| Integration host factor alpha subunit [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|301385321|ref|ZP_07233739.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          tomato Max13]
 gi|302062680|ref|ZP_07254221.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          tomato K40]
 gi|302132637|ref|ZP_07258627.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          tomato NCPPB 1108]
 gi|302187619|ref|ZP_07264292.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          syringae 642]
 gi|312961937|ref|ZP_07776434.1| integration host factor, alpha subunit [Pseudomonas fluorescens
          WH6]
 gi|38372323|sp|Q883H6|IHFA_PSESM RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|81308305|sp|Q4ZUG1|IHFA_PSEU2 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123605197|sp|Q3KEX6|IHFA_PSEPF RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123747651|sp|Q48JR7|IHFA_PSE14 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|123748498|sp|Q4KEV8|IHFA_PSEF5 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|259491533|sp|C3JZN1|IHFA_PSEFS RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|28852823|gb|AAO55895.1| integration host factor, alpha subunit [Pseudomonas syringae pv.
          tomato str. DC3000]
 gi|63256115|gb|AAY37211.1| Integration host factor, alpha subunit [Pseudomonas syringae pv.
          syringae B728a]
 gi|68343786|gb|AAY91392.1| integration host factor, alpha subunit [Pseudomonas fluorescens
          Pf-5]
 gi|71558281|gb|AAZ37492.1| integration host factor, alpha subunit [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|77382167|gb|ABA73680.1| integration host factor alpha-subunit [Pseudomonas fluorescens
          Pf0-1]
 gi|213924660|gb|EEB58228.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          tomato T1]
 gi|229363439|emb|CAY50633.1| integration host factor alpha-subunit [Pseudomonas fluorescens
          SBW25]
 gi|298158790|gb|EFH99853.1| Integration host factor alpha subunit [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|311283747|gb|EFQ62331.1| integration host factor, alpha subunit [Pseudomonas fluorescens
          WH6]
 gi|320324308|gb|EFW80387.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          glycinea str. B076]
 gi|320328570|gb|EFW84572.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330867701|gb|EGH02410.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          aesculi str. 0893_23]
 gi|330876795|gb|EGH10944.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
 gi|330885570|gb|EGH19719.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330888323|gb|EGH20984.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          mori str. 301020]
 gi|330898072|gb|EGH29491.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          japonica str. M301072PT]
 gi|330943383|gb|EGH45746.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          pisi str. 1704B]
 gi|330951872|gb|EGH52132.1| integration host factor subunit alpha [Pseudomonas syringae Cit
          7]
 gi|330958893|gb|EGH59153.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          maculicola str. ES4326]
 gi|330967292|gb|EGH67552.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          actinidiae str. M302091]
 gi|330973946|gb|EGH74012.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          aceris str. M302273PT]
 gi|330977715|gb|EGH77618.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          aptata str. DSM 50252]
 gi|330989235|gb|EGH87338.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          lachrymans str. M301315]
 gi|331010496|gb|EGH90552.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          tabaci ATCC 11528]
 gi|331016133|gb|EGH96189.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
 gi|331023866|gb|EGI03923.1| integration host factor subunit alpha [Pseudomonas syringae pv.
          oryzae str. 1_6]
          Length = 100

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 52/91 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +E GL+++++   V   F EI  +    E +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEMAERLYEELGLNKREAKELVELFFEEIRHALEDNEQVKLSGFGNFDLRDKRQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  RRVV F+    LK R+ 
Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARVE 93


>gi|18311461|ref|NP_563395.1| DNA-binding protein HU [Clostridium perfringens str. 13]
 gi|110801137|ref|YP_697167.1| DNA-binding protein HU [Clostridium perfringens ATCC 13124]
 gi|110803022|ref|YP_699735.1| DNA-binding protein HU [Clostridium perfringens SM101]
 gi|168213403|ref|ZP_02639028.1| DNA-binding protein HU [Clostridium perfringens CPE str. F4969]
 gi|168217596|ref|ZP_02643221.1| DNA-binding protein HU [Clostridium perfringens NCTC 8239]
 gi|169343310|ref|ZP_02864320.1| DNA-binding protein HU [Clostridium perfringens C str. JGS1495]
 gi|18146145|dbj|BAB82185.1| probable DNA binding protein [Clostridium perfringens str. 13]
 gi|110675784|gb|ABG84771.1| DNA-binding protein HU [Clostridium perfringens ATCC 13124]
 gi|110683523|gb|ABG86893.1| DNA-binding protein HU [Clostridium perfringens SM101]
 gi|169298608|gb|EDS80689.1| DNA-binding protein HU [Clostridium perfringens C str. JGS1495]
 gi|170715074|gb|EDT27256.1| DNA-binding protein HU [Clostridium perfringens CPE str. F4969]
 gi|182380308|gb|EDT77787.1| DNA-binding protein HU [Clostridium perfringens NCTC 8239]
          Length = 91

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  L++KD+   +      + ++   G+ +++  F TF  + +  R G
Sbjct: 1  MNKAELITSMAEKSNLTKKDAELALKAFIESVSETLENGDKVQLVGFGTFETRVRAEREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + +KI      VFK    LK+R+ 
Sbjct: 61 RNPRTKEVIKIPASIAPVFKPGKELKERVN 90


>gi|328545805|ref|YP_004305914.1| integration host factor subunit beta [polymorphum gilvum
          SL003B-26A1]
 gi|326415545|gb|ADZ72608.1| Integration host factor subunit beta [Polymorphum gilvum
          SL003B-26A1]
          Length = 101

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 57/94 (60%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I+++   L ++D    V  + +EI ++ +RG+ +++  F  F VK + +RV
Sbjct: 1  MIKSELVQRIAEQNPHLYQRDVENIVNAILDEITEALMRGDRVELRGFGAFSVKNRPARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T Q+V +D + V  FK    +++R+   +
Sbjct: 61 GRNPRTGQKVDVDEKYVPFFKTGKEMRERLNGGV 94


>gi|239831863|ref|ZP_04680192.1| DNA-binding protein HRL18 [Ochrobactrum intermedium LMG 3301]
 gi|239824130|gb|EEQ95698.1| DNA-binding protein HRL18 [Ochrobactrum intermedium LMG 3301]
          Length = 93

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ GL++ D+   V  +   +  +   GE +++  F  F V  + +  G
Sbjct: 3  MNKNELVAAVAEKGGLTKADAGTAVDAVLAAVTGALKAGEEVRLPGFGVFSVSHRAASTG 62

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T +EV I  R V  F A   LK  +  
Sbjct: 63 RNPSTGKEVAIPARNVPKFSAGKGLKDAVNG 93


>gi|197302366|ref|ZP_03167423.1| hypothetical protein RUMLAC_01095 [Ruminococcus lactaris ATCC
          29176]
 gi|197298545|gb|EDY33088.1| hypothetical protein RUMLAC_01095 [Ruminococcus lactaris ATCC
          29176]
          Length = 90

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ + +++++  +S+KDS + +    + + +    G+ +++  F TF V ++ +R G
Sbjct: 1  MNKTEFIAAVAEKAEISKKDSEKALKAFVDVVAEQLKAGDKVQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + + I   +   FKA   LK  I 
Sbjct: 61 RNPQTGETMTIAACKAPKFKAGKALKDAIN 90


>gi|15800170|ref|NP_286182.1| transcriptional regulator HU subunit beta [Escherichia coli
          O157:H7 EDL933]
 gi|15829748|ref|NP_308521.1| transcriptional regulator HU subunit beta [Escherichia coli
          O157:H7 str. Sakai]
 gi|16128425|ref|NP_414974.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli str. K-12 substr. MG1655]
 gi|24111824|ref|NP_706334.1| transcriptional regulator HU subunit beta [Shigella flexneri 2a
          str. 301]
 gi|26246451|ref|NP_752490.1| transcriptional regulator HU subunit beta [Escherichia coli
          CFT073]
 gi|30061942|ref|NP_836113.1| transcriptional regulator HU subunit beta [Shigella flexneri 2a
          str. 2457T]
 gi|74311015|ref|YP_309434.1| transcriptional regulator HU subunit beta [Shigella sonnei Ss046]
 gi|82542928|ref|YP_406875.1| transcriptional regulator HU subunit beta [Shigella boydii Sb227]
 gi|82775653|ref|YP_402000.1| transcriptional regulator HU subunit beta [Shigella dysenteriae
          Sd197]
 gi|89107310|ref|AP_001090.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli str. K-12 substr. W3110]
 gi|91209514|ref|YP_539500.1| transcriptional regulator HU subunit beta [Escherichia coli
          UTI89]
 gi|110640701|ref|YP_668429.1| transcriptional regulator HU subunit beta [Escherichia coli 536]
 gi|110804468|ref|YP_687988.1| transcriptional regulator HU subunit beta [Shigella flexneri 5
          str. 8401]
 gi|117622700|ref|YP_851613.1| transcriptional regulator HU subunit beta [Escherichia coli APEC
          O1]
 gi|157158595|ref|YP_001461627.1| transcriptional regulator HU subunit beta [Escherichia coli
          E24377A]
 gi|157159967|ref|YP_001457285.1| transcriptional regulator HU subunit beta [Escherichia coli HS]
 gi|168747884|ref|ZP_02772906.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4113]
 gi|168754545|ref|ZP_02779552.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4401]
 gi|168760405|ref|ZP_02785412.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4501]
 gi|168768395|ref|ZP_02793402.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4486]
 gi|168777136|ref|ZP_02802143.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4196]
 gi|168778933|ref|ZP_02803940.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4076]
 gi|168786291|ref|ZP_02811298.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC869]
 gi|168798004|ref|ZP_02823011.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC508]
 gi|170021187|ref|YP_001726141.1| transcriptional regulator HU subunit beta [Escherichia coli ATCC
          8739]
 gi|170080026|ref|YP_001729346.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli str. K-12 substr. DH10B]
 gi|170681712|ref|YP_001742584.1| transcriptional regulator HU subunit beta [Escherichia coli
          SMS-3-5]
 gi|170767837|ref|ZP_02902290.1| DNA-binding protein HU-beta [Escherichia albertii TW07627]
 gi|187732111|ref|YP_001879151.1| transcriptional regulator HU subunit beta [Shigella boydii CDC
          3083-94]
 gi|188494441|ref|ZP_03001711.1| DNA-binding protein HU-beta [Escherichia coli 53638]
 gi|191169609|ref|ZP_03031324.1| DNA-binding protein HU-beta [Escherichia coli B7A]
 gi|191173656|ref|ZP_03035180.1| DNA-binding protein HU-beta [Escherichia coli F11]
 gi|193064118|ref|ZP_03045202.1| DNA-binding protein HU-beta [Escherichia coli E22]
 gi|193067526|ref|ZP_03048493.1| DNA-binding protein HU-beta [Escherichia coli E110019]
 gi|194429030|ref|ZP_03061562.1| DNA-binding protein HU-beta [Escherichia coli B171]
 gi|194435314|ref|ZP_03067526.1| DNA-binding protein HU-beta [Shigella dysenteriae 1012]
 gi|194437413|ref|ZP_03069510.1| DNA-binding protein HU-beta [Escherichia coli 101-1]
 gi|208807585|ref|ZP_03249922.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4206]
 gi|208815532|ref|ZP_03256711.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4045]
 gi|208823271|ref|ZP_03263589.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4042]
 gi|209399224|ref|YP_002269087.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4115]
 gi|209917657|ref|YP_002291741.1| transcriptional regulator HU subunit beta [Escherichia coli SE11]
 gi|215485521|ref|YP_002327952.1| transcriptional regulator HU subunit beta [Escherichia coli
          O127:H6 str. E2348/69]
 gi|217324840|ref|ZP_03440924.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          TW14588]
 gi|218549892|ref|YP_002383683.1| transcriptional regulator HU subunit beta [Escherichia fergusonii
          ATCC 35469]
 gi|218553007|ref|YP_002385920.1| transcriptional regulator HU subunit beta [Escherichia coli IAI1]
 gi|218557350|ref|YP_002390263.1| transcriptional regulator HU subunit beta [Escherichia coli S88]
 gi|218688304|ref|YP_002396516.1| transcriptional regulator HU subunit beta [Escherichia coli ED1a]
 gi|218693903|ref|YP_002401570.1| transcriptional regulator HU subunit beta [Escherichia coli
          55989]
 gi|218698648|ref|YP_002406277.1| transcriptional regulator HU subunit beta [Escherichia coli
          IAI39]
 gi|218703724|ref|YP_002411243.1| transcriptional regulator HU subunit beta [Escherichia coli
          UMN026]
 gi|227884549|ref|ZP_04002354.1| DNA-binding protein HU [Escherichia coli 83972]
 gi|237707565|ref|ZP_04538046.1| transcriptional regulator HU subunit beta [Escherichia sp.
          3_2_53FAA]
 gi|238899728|ref|YP_002925524.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli BW2952]
 gi|253774569|ref|YP_003037400.1| transcriptional regulator HU subunit beta [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|254160510|ref|YP_003043618.1| transcriptional regulator HU subunit beta [Escherichia coli B
          str. REL606]
 gi|254791624|ref|YP_003076461.1| transcriptional regulator HU subunit beta [Escherichia coli
          O157:H7 str. TW14359]
 gi|256020412|ref|ZP_05434277.1| transcriptional regulator HU subunit beta [Shigella sp. D9]
 gi|256023941|ref|ZP_05437806.1| transcriptional regulator HU subunit beta [Escherichia sp.
          4_1_40B]
 gi|260842641|ref|YP_003220419.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli O103:H2 str. 12009]
 gi|260853663|ref|YP_003227554.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli O26:H11 str. 11368]
 gi|260866601|ref|YP_003233003.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli O111:H- str. 11128]
 gi|261223923|ref|ZP_05938204.1| transcriptional regulator HU subunit beta [Escherichia coli
          O157:H7 str. FRIK2000]
 gi|261256363|ref|ZP_05948896.1| transcriptional regulator HU subunit beta [Escherichia coli
          O157:H7 str. FRIK966]
 gi|291281347|ref|YP_003498165.1| DNA-binding protein HU-beta [Escherichia coli O55:H7 str. CB9615]
 gi|293403561|ref|ZP_06647652.1| transcriptional regulator HU subunit alpha [Escherichia coli
          FVEC1412]
 gi|293408590|ref|ZP_06652429.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293413695|ref|ZP_06656344.1| DNA-binding protein HU-beta [Escherichia coli B185]
 gi|293418511|ref|ZP_06660946.1| transcriptional regulator HU subunit alpha [Escherichia coli
          B088]
 gi|298379173|ref|ZP_06989054.1| DNA-binding protein HU-beta [Escherichia coli FVEC1302]
 gi|300818228|ref|ZP_07098439.1| DNA-binding protein HU [Escherichia coli MS 107-1]
 gi|300820314|ref|ZP_07100466.1| DNA-binding protein HU [Escherichia coli MS 119-7]
 gi|300900511|ref|ZP_07118678.1| DNA-binding protein HU [Escherichia coli MS 198-1]
 gi|300903292|ref|ZP_07121220.1| DNA-binding protein HU [Escherichia coli MS 84-1]
 gi|300918177|ref|ZP_07134784.1| DNA-binding protein HU [Escherichia coli MS 115-1]
 gi|300924167|ref|ZP_07140159.1| DNA-binding protein HU [Escherichia coli MS 182-1]
 gi|300930257|ref|ZP_07145670.1| DNA-binding protein HU [Escherichia coli MS 187-1]
 gi|300937057|ref|ZP_07151923.1| DNA-binding protein HU [Escherichia coli MS 21-1]
 gi|300947907|ref|ZP_07162055.1| DNA-binding protein HU [Escherichia coli MS 116-1]
 gi|300958008|ref|ZP_07170172.1| DNA-binding protein HU [Escherichia coli MS 175-1]
 gi|300988005|ref|ZP_07178485.1| DNA-binding protein HU [Escherichia coli MS 45-1]
 gi|300997371|ref|ZP_07181711.1| DNA-binding protein HU [Escherichia coli MS 200-1]
 gi|301022566|ref|ZP_07186438.1| DNA-binding protein HU [Escherichia coli MS 69-1]
 gi|301025664|ref|ZP_07189182.1| DNA-binding protein HU [Escherichia coli MS 196-1]
 gi|301049647|ref|ZP_07196596.1| DNA-binding protein HU [Escherichia coli MS 185-1]
 gi|301301591|ref|ZP_07207726.1| DNA-binding protein HU [Escherichia coli MS 124-1]
 gi|301330693|ref|ZP_07223295.1| DNA-binding protein HU [Escherichia coli MS 78-1]
 gi|301647366|ref|ZP_07247178.1| DNA-binding protein HU [Escherichia coli MS 146-1]
 gi|306813092|ref|ZP_07447285.1| transcriptional regulator HU subunit beta [Escherichia coli
          NC101]
 gi|307137085|ref|ZP_07496441.1| transcriptional regulator HU subunit beta [Escherichia coli H736]
 gi|307312182|ref|ZP_07591818.1| histone family protein DNA-binding protein [Escherichia coli W]
 gi|309794827|ref|ZP_07689248.1| DNA-binding protein HU [Escherichia coli MS 145-7]
 gi|312964535|ref|ZP_07778791.1| DNA-binding protein HU-beta [Escherichia coli 2362-75]
 gi|312970537|ref|ZP_07784718.1| DNA-binding protein HU-beta [Escherichia coli 1827-70]
 gi|331640960|ref|ZP_08342095.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H736]
 gi|331645616|ref|ZP_08346720.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli M605]
 gi|331651378|ref|ZP_08352403.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli M718]
 gi|331656497|ref|ZP_08357459.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA206]
 gi|331661821|ref|ZP_08362744.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA143]
 gi|331666796|ref|ZP_08367670.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA271]
 gi|331676112|ref|ZP_08376824.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H591]
 gi|331681835|ref|ZP_08382468.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H299]
 gi|332281591|ref|ZP_08394004.1| transcriptional regulator HU subunit beta [Shigella sp. D9]
 gi|82581654|sp|P0ACF6|DBHB_ECO57 RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1;
          AltName: Full=NS1
 gi|82581655|sp|P0ACF5|DBHB_ECOL6 RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1;
          AltName: Full=NS1
 gi|82581656|sp|P0ACF4|DBHB_ECOLI RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1;
          AltName: Full=NS1
 gi|82581657|sp|P0ACF7|DBHB_SHIFL RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1;
          AltName: Full=NS1
 gi|134105079|pdb|2O97|B Chain B, Crystal Structure Of E. Coli Hu Heterodimer
 gi|12513302|gb|AAG54790.1|AE005223_5 DNA-binding protein HU-beta, NS1 (HU-1) [Escherichia coli O157:H7
          str. EDL933]
 gi|26106849|gb|AAN79034.1|AE016756_217 DNA-binding protein HU-beta [Escherichia coli CFT073]
 gi|581106|emb|CAA34539.1| unnamed protein product [Escherichia coli K-12]
 gi|1773124|gb|AAB40196.1| DNA-binding protein NS1 [Escherichia coli]
 gi|1786644|gb|AAC73543.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli str. K-12 substr. MG1655]
 gi|13359951|dbj|BAB33917.1| DNA-binding protein HU-1 [Escherichia coli O157:H7 str. Sakai]
 gi|24050616|gb|AAN42041.1| DNA-binding protein HU-beta, NS1 (HU-1) [Shigella flexneri 2a
          str. 301]
 gi|30040186|gb|AAP15919.1| DNA-binding protein HU-beta, NS1 (HU-1) [Shigella flexneri 2a
          str. 2457T]
 gi|73854492|gb|AAZ87199.1| DNA-binding protein HU-beta [Shigella sonnei Ss046]
 gi|81239801|gb|ABB60511.1| DNA-binding protein HU-beta [Shigella dysenteriae Sd197]
 gi|81244339|gb|ABB65047.1| DNA-binding protein HU-beta [Shigella boydii Sb227]
 gi|85674580|dbj|BAE76220.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli str. K12 substr. W3110]
 gi|91071088|gb|ABE05969.1| DNA-binding protein HU-beta, NS1 (HU-1) [Escherichia coli UTI89]
 gi|110342293|gb|ABG68530.1| DNA-binding protein HU-beta [Escherichia coli 536]
 gi|110614016|gb|ABF02683.1| DNA-binding protein HU-beta, NS1 (HU-1) [Shigella flexneri 5 str.
          8401]
 gi|115511824|gb|ABI99898.1| DNA-binding protein HU-beta, NS1 (HU-1) [Escherichia coli APEC
          O1]
 gi|157065647|gb|ABV04902.1| DNA-binding protein HU-beta [Escherichia coli HS]
 gi|157080625|gb|ABV20333.1| DNA-binding protein HU-beta [Escherichia coli E24377A]
 gi|169756115|gb|ACA78814.1| histone family protein DNA-binding protein [Escherichia coli ATCC
          8739]
 gi|169887861|gb|ACB01568.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli str. K-12 substr. DH10B]
 gi|170123325|gb|EDS92256.1| DNA-binding protein HU-beta [Escherichia albertii TW07627]
 gi|170519430|gb|ACB17608.1| DNA-binding protein HU-beta [Escherichia coli SMS-3-5]
 gi|187429103|gb|ACD08377.1| DNA-binding protein HU-beta [Shigella boydii CDC 3083-94]
 gi|187767567|gb|EDU31411.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4196]
 gi|188017725|gb|EDU55847.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4113]
 gi|188489640|gb|EDU64743.1| DNA-binding protein HU-beta [Escherichia coli 53638]
 gi|189002751|gb|EDU71737.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4076]
 gi|189357994|gb|EDU76413.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4401]
 gi|189362520|gb|EDU80939.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4486]
 gi|189369140|gb|EDU87556.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4501]
 gi|189373754|gb|EDU92170.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC869]
 gi|189379306|gb|EDU97722.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC508]
 gi|190900350|gb|EDV60184.1| DNA-binding protein HU-beta [Escherichia coli B7A]
 gi|190906014|gb|EDV65629.1| DNA-binding protein HU-beta [Escherichia coli F11]
 gi|192929147|gb|EDV82757.1| DNA-binding protein HU-beta [Escherichia coli E22]
 gi|192958938|gb|EDV89374.1| DNA-binding protein HU-beta [Escherichia coli E110019]
 gi|194412967|gb|EDX29257.1| DNA-binding protein HU-beta [Escherichia coli B171]
 gi|194416446|gb|EDX32603.1| DNA-binding protein HU-beta [Shigella dysenteriae 1012]
 gi|194423582|gb|EDX39572.1| DNA-binding protein HU-beta [Escherichia coli 101-1]
 gi|208727386|gb|EDZ76987.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4206]
 gi|208732180|gb|EDZ80868.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4045]
 gi|208737464|gb|EDZ85148.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4042]
 gi|209160624|gb|ACI38057.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC4115]
 gi|209743824|gb|ACI70219.1| DNA-binding protein HU-1 [Escherichia coli]
 gi|209743826|gb|ACI70220.1| DNA-binding protein HU-1 [Escherichia coli]
 gi|209743828|gb|ACI70221.1| DNA-binding protein HU-1 [Escherichia coli]
 gi|209743830|gb|ACI70222.1| DNA-binding protein HU-1 [Escherichia coli]
 gi|209743832|gb|ACI70223.1| DNA-binding protein HU-1 [Escherichia coli]
 gi|209910916|dbj|BAG75990.1| DNA-binding protein HU-beta [Escherichia coli SE11]
 gi|215263593|emb|CAS07923.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli O127:H6 str. E2348/69]
 gi|217321061|gb|EEC29485.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          TW14588]
 gi|218350635|emb|CAU96327.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli 55989]
 gi|218357433|emb|CAQ90072.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia fergusonii ATCC 35469]
 gi|218359775|emb|CAQ97316.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli IAI1]
 gi|218364119|emb|CAR01784.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli S88]
 gi|218368634|emb|CAR16373.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli IAI39]
 gi|218425868|emb|CAR06674.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli ED1a]
 gi|218430821|emb|CAR11695.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli UMN026]
 gi|222032235|emb|CAP74974.1| DNA-binding protein HU-beta [Escherichia coli LF82]
 gi|226898775|gb|EEH85034.1| transcriptional regulator HU subunit beta [Escherichia sp.
          3_2_53FAA]
 gi|227838635|gb|EEJ49101.1| DNA-binding protein HU [Escherichia coli 83972]
 gi|238861438|gb|ACR63436.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli BW2952]
 gi|242376222|emb|CAQ30913.1| transcriptional dual regulator HU-beta, NS1 (HU-1), subunit of HU
          transcriptional dual regulator [Escherichia coli
          BL21(DE3)]
 gi|253325613|gb|ACT30215.1| histone family protein DNA-binding protein [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253972411|gb|ACT38082.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli B str. REL606]
 gi|253976621|gb|ACT42291.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli BL21(DE3)]
 gi|254591024|gb|ACT70385.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli O157:H7 str. TW14359]
 gi|257752312|dbj|BAI23814.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli O26:H11 str. 11368]
 gi|257757788|dbj|BAI29285.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli O103:H2 str. 12009]
 gi|257762957|dbj|BAI34452.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli O111:H- str. 11128]
 gi|260450373|gb|ACX40795.1| histone family protein DNA-binding protein [Escherichia coli DH1]
 gi|281177611|dbj|BAI53941.1| DNA-binding protein HU-beta [Escherichia coli SE15]
 gi|281599780|gb|ADA72764.1| DNA-binding protein HU-beta [Shigella flexneri 2002017]
 gi|284920250|emb|CBG33309.1| DNA-binding protein HU-beta [Escherichia coli 042]
 gi|290761220|gb|ADD55181.1| DNA-binding protein HU-beta [Escherichia coli O55:H7 str. CB9615]
 gi|291325039|gb|EFE64454.1| transcriptional regulator HU subunit alpha [Escherichia coli
          B088]
 gi|291429414|gb|EFF02434.1| transcriptional regulator HU subunit alpha [Escherichia coli
          FVEC1412]
 gi|291433753|gb|EFF06726.1| DNA-binding protein HU-beta [Escherichia coli B185]
 gi|291471768|gb|EFF14251.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294489973|gb|ADE88729.1| DNA-binding protein HU-beta [Escherichia coli IHE3034]
 gi|298280286|gb|EFI21790.1| DNA-binding protein HU-beta [Escherichia coli FVEC1302]
 gi|299880018|gb|EFI88229.1| DNA-binding protein HU [Escherichia coli MS 196-1]
 gi|300298584|gb|EFJ54969.1| DNA-binding protein HU [Escherichia coli MS 185-1]
 gi|300304190|gb|EFJ58710.1| DNA-binding protein HU [Escherichia coli MS 200-1]
 gi|300315275|gb|EFJ65059.1| DNA-binding protein HU [Escherichia coli MS 175-1]
 gi|300355992|gb|EFJ71862.1| DNA-binding protein HU [Escherichia coli MS 198-1]
 gi|300397447|gb|EFJ80985.1| DNA-binding protein HU [Escherichia coli MS 69-1]
 gi|300404587|gb|EFJ88125.1| DNA-binding protein HU [Escherichia coli MS 84-1]
 gi|300407557|gb|EFJ91095.1| DNA-binding protein HU [Escherichia coli MS 45-1]
 gi|300414628|gb|EFJ97938.1| DNA-binding protein HU [Escherichia coli MS 115-1]
 gi|300419620|gb|EFK02931.1| DNA-binding protein HU [Escherichia coli MS 182-1]
 gi|300452507|gb|EFK16127.1| DNA-binding protein HU [Escherichia coli MS 116-1]
 gi|300457888|gb|EFK21381.1| DNA-binding protein HU [Escherichia coli MS 21-1]
 gi|300461829|gb|EFK25322.1| DNA-binding protein HU [Escherichia coli MS 187-1]
 gi|300527099|gb|EFK48168.1| DNA-binding protein HU [Escherichia coli MS 119-7]
 gi|300529119|gb|EFK50181.1| DNA-binding protein HU [Escherichia coli MS 107-1]
 gi|300843088|gb|EFK70848.1| DNA-binding protein HU [Escherichia coli MS 124-1]
 gi|300843354|gb|EFK71114.1| DNA-binding protein HU [Escherichia coli MS 78-1]
 gi|301074511|gb|EFK89317.1| DNA-binding protein HU [Escherichia coli MS 146-1]
 gi|305853855|gb|EFM54294.1| transcriptional regulator HU subunit beta [Escherichia coli
          NC101]
 gi|306907684|gb|EFN38186.1| histone family protein DNA-binding protein [Escherichia coli W]
 gi|307552347|gb|ADN45122.1| DNA-binding protein HU [Escherichia coli ABU 83972]
 gi|307628090|gb|ADN72394.1| transcriptional regulator HU subunit beta [Escherichia coli
          UM146]
 gi|308121480|gb|EFO58742.1| DNA-binding protein HU [Escherichia coli MS 145-7]
 gi|309700701|emb|CBI99997.1| DNA-binding protein HU-beta [Escherichia coli ETEC H10407]
 gi|310337186|gb|EFQ02324.1| DNA-binding protein HU-beta [Escherichia coli 1827-70]
 gi|312290769|gb|EFR18646.1| DNA-binding protein HU-beta [Escherichia coli 2362-75]
 gi|312945018|gb|ADR25845.1| transcriptional regulator HU subunit beta [Escherichia coli
          O83:H1 str. NRG 857C]
 gi|313646933|gb|EFS11390.1| DNA-binding protein HU-beta [Shigella flexneri 2a str. 2457T]
 gi|315059720|gb|ADT74047.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Escherichia coli W]
 gi|315135122|dbj|BAJ42281.1| DNA-binding protein HU-beta [Escherichia coli DH1]
 gi|315256268|gb|EFU36236.1| DNA-binding protein HU [Escherichia coli MS 85-1]
 gi|315289842|gb|EFU49232.1| DNA-binding protein HU [Escherichia coli MS 110-3]
 gi|315294226|gb|EFU53577.1| DNA-binding protein HU [Escherichia coli MS 153-1]
 gi|315299564|gb|EFU58812.1| DNA-binding protein HU [Escherichia coli MS 16-3]
 gi|315616619|gb|EFU97236.1| DNA-binding protein HU-beta [Escherichia coli 3431]
 gi|320173740|gb|EFW48923.1| DNA-binding protein HU-beta [Shigella dysenteriae CDC 74-1112]
 gi|320178278|gb|EFW53252.1| DNA-binding protein HU-beta [Shigella boydii ATCC 9905]
 gi|320186070|gb|EFW60815.1| DNA-binding protein HU-beta [Shigella flexneri CDC 796-83]
 gi|320192856|gb|EFW67496.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
          EC1212]
 gi|320197086|gb|EFW71705.1| DNA-binding protein HU-beta [Escherichia coli WV_060327]
 gi|320201684|gb|EFW76260.1| DNA-binding protein HU-beta [Escherichia coli EC4100B]
 gi|320638435|gb|EFX08149.1| transcriptional regulator HU subunit beta [Escherichia coli
          O157:H7 str. G5101]
 gi|320643816|gb|EFX12939.1| transcriptional regulator HU subunit beta [Escherichia coli
          O157:H- str. 493-89]
 gi|320649167|gb|EFX17745.1| transcriptional regulator HU subunit beta [Escherichia coli
          O157:H- str. H 2687]
 gi|320656060|gb|EFX23976.1| transcriptional regulator HU subunit beta [Escherichia coli
          O55:H7 str. 3256-97 TW 07815]
 gi|320661210|gb|EFX28641.1| transcriptional regulator HU subunit beta [Escherichia coli
          O55:H7 str. USDA 5905]
 gi|320665186|gb|EFX32279.1| transcriptional regulator HU subunit beta [Escherichia coli
          O157:H7 str. LSU-61]
 gi|323153477|gb|EFZ39731.1| DNA-binding protein HU-beta [Escherichia coli EPECa14]
 gi|323160449|gb|EFZ46397.1| DNA-binding protein HU-beta [Escherichia coli E128010]
 gi|323164241|gb|EFZ50048.1| DNA-binding protein HU-beta [Shigella sonnei 53G]
 gi|323170527|gb|EFZ56177.1| DNA-binding protein HU-beta [Escherichia coli LT-68]
 gi|323178291|gb|EFZ63869.1| DNA-binding protein HU-beta [Escherichia coli 1180]
 gi|323184729|gb|EFZ70100.1| DNA-binding protein HU-beta [Escherichia coli 1357]
 gi|323191360|gb|EFZ76623.1| DNA-binding protein HU-beta [Escherichia coli RN587/1]
 gi|323379715|gb|ADX51983.1| histone family protein DNA-binding protein [Escherichia coli
          KO11]
 gi|323938626|gb|EGB34875.1| bacterial DNA-binding protein [Escherichia coli E1520]
 gi|323943247|gb|EGB39403.1| DNA-binding protein [Escherichia coli E482]
 gi|323945346|gb|EGB41402.1| bacterial DNA-binding protein [Escherichia coli H120]
 gi|323952948|gb|EGB48816.1| DNA-binding protein [Escherichia coli H252]
 gi|323958633|gb|EGB54336.1| DNA-binding protein [Escherichia coli H263]
 gi|323963430|gb|EGB58992.1| DNA-binding protein [Escherichia coli H489]
 gi|323965127|gb|EGB60586.1| DNA-binding protein [Escherichia coli M863]
 gi|323972294|gb|EGB67504.1| DNA-binding protein [Escherichia coli TA007]
 gi|323976075|gb|EGB71168.1| DNA-binding protein [Escherichia coli TW10509]
 gi|324010071|gb|EGB79290.1| DNA-binding protein HU [Escherichia coli MS 57-2]
 gi|324010654|gb|EGB79873.1| DNA-binding protein HU [Escherichia coli MS 60-1]
 gi|324016699|gb|EGB85918.1| DNA-binding protein HU [Escherichia coli MS 117-3]
 gi|324114667|gb|EGC08635.1| DNA-binding protein [Escherichia fergusonii B253]
 gi|324116928|gb|EGC10841.1| DNA-binding protein [Escherichia coli E1167]
 gi|325498269|gb|EGC96128.1| transcriptional regulator HU subunit beta [Escherichia fergusonii
          ECD227]
 gi|326341204|gb|EGD64996.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. 1044]
 gi|326346021|gb|EGD69760.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. 1125]
 gi|327254768|gb|EGE66384.1| DNA-binding protein HU-beta [Escherichia coli STEC_7v]
 gi|330910234|gb|EGH38744.1| DNA-binding protein HU-beta [Escherichia coli AA86]
 gi|331037758|gb|EGI09978.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H736]
 gi|331045778|gb|EGI17904.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli M605]
 gi|331051119|gb|EGI23171.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli M718]
 gi|331054745|gb|EGI26754.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA206]
 gi|331060243|gb|EGI32207.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA143]
 gi|331066020|gb|EGI37904.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA271]
 gi|331076170|gb|EGI47452.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H591]
 gi|331081037|gb|EGI52202.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H299]
 gi|332085888|gb|EGI91052.1| DNA-binding protein HU-beta [Shigella dysenteriae 155-74]
 gi|332094596|gb|EGI99642.1| DNA-binding protein HU-beta [Shigella boydii 5216-82]
 gi|332098606|gb|EGJ03572.1| DNA-binding protein HU-beta [Shigella boydii 3594-74]
 gi|332103943|gb|EGJ07289.1| transcriptional regulator HU subunit beta [Shigella sp. D9]
 gi|332341804|gb|AEE55138.1| transcriptional regulator protein HU, subunit beta HupB
          [Escherichia coli UMNK88]
 gi|332761491|gb|EGJ91773.1| DNA-binding protein HU-beta [Shigella flexneri 2747-71]
 gi|332763739|gb|EGJ93977.1| DNA-binding protein HU-beta [Shigella flexneri K-671]
 gi|333007920|gb|EGK27396.1| DNA-binding protein HU-beta [Shigella flexneri K-218]
 gi|333008126|gb|EGK27601.1| DNA-binding protein HU-beta [Shigella flexneri VA-6]
 gi|333010901|gb|EGK30327.1| DNA-binding protein HU-beta [Shigella flexneri K-272]
 gi|333020703|gb|EGK39963.1| DNA-binding protein HU-beta [Shigella flexneri K-227]
 gi|333021963|gb|EGK41211.1| DNA-binding protein HU-beta [Shigella flexneri K-304]
          Length = 90

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + +S   G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F+A   LK  + 
Sbjct: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90


>gi|91223955|ref|ZP_01259219.1| integration host factor alpha subunit [Vibrio alginolyticus
          12G01]
 gi|262394474|ref|YP_003286328.1| integration host factor subunit alpha [Vibrio sp. Ex25]
 gi|269966318|ref|ZP_06180405.1| integration host factor, alpha subunit [Vibrio alginolyticus 40B]
 gi|91191447|gb|EAS77712.1| integration host factor alpha subunit [Vibrio alginolyticus
          12G01]
 gi|262338068|gb|ACY51863.1| integration host factor alpha subunit [Vibrio sp. Ex25]
 gi|269829057|gb|EEZ83304.1| integration host factor, alpha subunit [Vibrio alginolyticus 40B]
          Length = 98

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 53/92 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L +++  + G S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAELAENLFDKLGFSKRDAKETVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARVEN 93


>gi|290475541|ref|YP_003468429.1| integration host factor (IHF) subunit alpha, DNA-bending protein,
          DNA replication [Xenorhabdus bovienii SS-2004]
 gi|289174862|emb|CBJ81663.1| integration host factor (IHF), alpha subunit, DNA-bending
          protein, DNA replication [Xenorhabdus bovienii SS-2004]
          Length = 98

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 55/95 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ +++ ++ G+S++D+   V   F E+  S   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSENLFEKLGISKRDAKDLVEIFFEEVRHSLENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +++ I  RRVV F+    LK R+   + 
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKNRVEKALP 96


>gi|262275830|ref|ZP_06053639.1| integration host factor alpha subunit [Grimontia hollisae CIP
          101886]
 gi|262219638|gb|EEY70954.1| integration host factor alpha subunit [Grimontia hollisae CIP
          101886]
          Length = 98

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 53/93 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ +  G+S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAENLFENVGMSKRDAKETVEAFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +++ I  RRVV F+    LK R+   
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARVEKA 94


>gi|307704962|ref|ZP_07641850.1| DNA-binding protein HU [Streptococcus mitis SK597]
 gi|307621472|gb|EFO00521.1| DNA-binding protein HU [Streptococcus mitis SK597]
          Length = 91

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 49/89 (55%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F+ + D    GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVEAVFSAVTDYLAAGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+ I   +V  FKA   LK  + 
Sbjct: 63 NPQTGKEITIAASKVPAFKAGKALKDAVK 91


>gi|126667906|ref|ZP_01738871.1| integration host factor subunit alpha [Marinobacter sp. ELB17]
 gi|126627566|gb|EAZ98198.1| integration host factor subunit alpha [Marinobacter sp. ELB17]
          Length = 100

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 55/98 (56%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ + +  E GL+++++   V   F+E+  +    E +K+S F  F ++ K  R 
Sbjct: 3   ALTKAEMAERLYDELGLNKREAKEMVEAFFDEVRGALGHNEQVKLSGFGNFDLRDKKERP 62

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +E+ I  RRVV F+    LK ++   +  ++
Sbjct: 63  GRNPKTGEEIPICARRVVTFRPGQKLKAKVEAYVETQQ 100


>gi|302878220|ref|YP_003846784.1| integration host factor, alpha subunit [Gallionella
          capsiferriformans ES-2]
 gi|302581009|gb|ADL55020.1| integration host factor, alpha subunit [Gallionella
          capsiferriformans ES-2]
          Length = 101

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 54/96 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+++L   + ++ GL+++++   V   F EI     + E +K+S F  F ++ K  R 
Sbjct: 2  TLTKAELADLLFEKVGLNKREAKDMVEAFFEEIRVKLEQSEEVKLSGFGNFQLRDKQQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T +E+ I  RRVV F  S+ LK  +  +  G
Sbjct: 62 GRNPKTGEEIPISARRVVTFHPSAKLKNLVEKNYHG 97


>gi|289208103|ref|YP_003460169.1| integration host factor, subunit alpha [Thioalkalivibrio sp.
          K90mix]
 gi|288943734|gb|ADC71433.1| integration host factor, alpha subunit [Thioalkalivibrio sp.
          K90mix]
          Length = 99

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 56/91 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL  ++++E GL+++++  FV   F E+  S   GE +K+S F  F ++ K  R 
Sbjct: 3  AVTKADLAATLNEELGLNKREAKEFVEMFFEEMRQSLEDGEGVKLSGFGNFILRDKNQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ +  RRVV F+    L++R+ 
Sbjct: 63 GRNPKTGEEIPVSARRVVTFRPGQKLRERVE 93


>gi|104781016|ref|YP_607514.1| DNA-binding protein HU-beta [Pseudomonas entomophila L48]
 gi|95110003|emb|CAK14708.1| DNA-binding protein HU-beta [Pseudomonas entomophila L48]
          Length = 90

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  +   +  +  +G+ + +  F TF VK++  R G
Sbjct: 1  MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTFSVKERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI   +V  FKA   LK  + 
Sbjct: 61 RNPQTGKAIKIAAAKVPGFKAGKGLKDAVN 90


>gi|61658219|gb|AAX49386.1| DNA-binding protein HU [Aeromonas hydrophila]
          Length = 98

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 45/93 (48%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
             + ++ LV +I+ +  LS+  +   +  + N I  S   G A+++  F TF V  +  
Sbjct: 6  GNVMNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGGAVQLVGFGTFKVNHRAG 65

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          R GRN QT +E++I    V  F A   LK  + 
Sbjct: 66 RTGRNPQTGKEIQIAAANVPSFVAGKALKDAVK 98


>gi|298528590|ref|ZP_07015994.1| histone family protein DNA-binding protein [Desulfonatronospira
          thiodismutans ASO3-1]
 gi|298512242|gb|EFI36144.1| histone family protein DNA-binding protein [Desulfonatronospira
          thiodismutans ASO3-1]
          Length = 90

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  +V S++++ G+++ D+ + +  + + I +    G+ + +  F TF V ++  R G
Sbjct: 1  MNKKQMVDSLAQKSGMTKADAQKALDGVEDIISEQLKNGDQVALPGFGTFTVAERKPRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E+ I   RV  FK    LK+ +
Sbjct: 61 RNPQTGAEINIPAARVPKFKPGKKLKEAV 89


>gi|91793844|ref|YP_563495.1| histone-like DNA-binding protein [Shewanella denitrificans OS217]
 gi|91715846|gb|ABE55772.1| histone-like DNA-binding protein [Shewanella denitrificans OS217]
          Length = 90

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + +    + +    G+ I +  F TF V+Q+  R G
Sbjct: 1  MNKSELIEKIASGADISKAAAGRALDSFIAAVTEGLKDGDKISLVGFGTFEVRQRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    +  FKA   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANIPAFKAGKSLKDAVN 90


>gi|209883627|ref|YP_002287484.1| integration host factor, beta subunit [Oligotropha carboxidovorans
           OM5]
 gi|226709797|sp|B6JCN9|IHFB_OLICO RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|209871823|gb|ACI91619.1| integration host factor, beta subunit [Oligotropha carboxidovorans
           OM5]
          Length = 106

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 5   ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV+ I++    L ++D    V  +  EI  +  RG+ +++  F  F VK + +R 
Sbjct: 1   MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVSALARGDRVELRGFGAFSVKHRPARA 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111
           GRN +T + V ++ + V  FK    +++R+  D        D  T PS
Sbjct: 61  GRNPRTGEHVPVEQKSVPFFKTGKEMRERLNRD------GLDGATPPS 102


>gi|188581269|ref|YP_001924714.1| histone family protein DNA-binding protein [Methylobacterium populi
           BJ001]
 gi|226709733|sp|B1ZKI7|IHFA_METPB RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|179344767|gb|ACB80179.1| histone family protein DNA-binding protein [Methylobacterium populi
           BJ001]
          Length = 108

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/105 (43%), Positives = 69/105 (65%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +++ ++ GLSR +S   V T+  EIC+    GE +K+SSF +F V+ KG 
Sbjct: 3   GKTVTRADLSEAVYQQVGLSRAESAALVETVLGEICNCLSSGETVKLSSFGSFVVRSKGK 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           R+GRN +T  EV+I+PR+V+VFK S++LK RI           +D
Sbjct: 63  RIGRNPKTGVEVEIEPRQVMVFKPSNVLKARINGGHVNGLDADED 107


>gi|30995375|ref|NP_438591.2| DNA-binding protein HU-alpha [Haemophilus influenzae Rd KW20]
 gi|145628799|ref|ZP_01784599.1| DNA-binding protein HU [Haemophilus influenzae 22.1-21]
 gi|145630394|ref|ZP_01786175.1| NADH pyrophosphatase [Haemophilus influenzae R3021]
 gi|145632675|ref|ZP_01788409.1| DNA-binding protein HU [Haemophilus influenzae 3655]
 gi|145634573|ref|ZP_01790282.1| NADH pyrophosphatase [Haemophilus influenzae PittAA]
 gi|145636301|ref|ZP_01791970.1| NADH pyrophosphatase [Haemophilus influenzae PittHH]
 gi|145638660|ref|ZP_01794269.1| NADH pyrophosphatase [Haemophilus influenzae PittII]
 gi|145640395|ref|ZP_01795979.1| DNA-binding protein HU [Haemophilus influenzae R3021]
 gi|148825290|ref|YP_001290043.1| NADH pyrophosphatase [Haemophilus influenzae PittEE]
 gi|148827627|ref|YP_001292380.1| DNA-binding protein HU [Haemophilus influenzae PittGG]
 gi|229844410|ref|ZP_04464550.1| DNA-binding protein HU [Haemophilus influenzae 6P18H1]
 gi|229846516|ref|ZP_04466624.1| DNA-binding protein HU [Haemophilus influenzae 7P49H1]
 gi|319775643|ref|YP_004138131.1| DNA-binding protein HU [Haemophilus influenzae F3047]
 gi|1169231|sp|P43722|DBH_HAEIN RecName: Full=DNA-binding protein HU
 gi|144979269|gb|EDJ88955.1| DNA-binding protein HU [Haemophilus influenzae 22.1-21]
 gi|144984129|gb|EDJ91566.1| NADH pyrophosphatase [Haemophilus influenzae R3021]
 gi|144986870|gb|EDJ93422.1| DNA-binding protein HU [Haemophilus influenzae 3655]
 gi|145268118|gb|EDK08113.1| NADH pyrophosphatase [Haemophilus influenzae PittAA]
 gi|145270466|gb|EDK10400.1| NADH pyrophosphatase [Haemophilus influenzae PittHH]
 gi|145272255|gb|EDK12163.1| NADH pyrophosphatase [Haemophilus influenzae PittII]
 gi|145274981|gb|EDK14843.1| DNA-binding protein HU [Haemophilus influenzae 22.4-21]
 gi|148715450|gb|ABQ97660.1| NADH pyrophosphatase [Haemophilus influenzae PittEE]
 gi|148718869|gb|ABQ99996.1| DNA-binding protein HU [Haemophilus influenzae PittGG]
 gi|229810609|gb|EEP46327.1| DNA-binding protein HU [Haemophilus influenzae 7P49H1]
 gi|229812659|gb|EEP48348.1| DNA-binding protein HU [Haemophilus influenzae 6P18H1]
 gi|301169130|emb|CBW28727.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Haemophilus influenzae 10810]
 gi|309750154|gb|ADO80138.1| DNA-binding protein HU-alpha [Haemophilus influenzae R2866]
 gi|317450234|emb|CBY86450.1| DNA-binding protein HU [Haemophilus influenzae F3047]
          Length = 90

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+    L++K +   +    + I  S   GE +++  F TF V ++ +R G
Sbjct: 1  MNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I   +V  F +   LK  I 
Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAIK 90


>gi|163814658|ref|ZP_02206047.1| hypothetical protein COPEUT_00809 [Coprococcus eutactus ATCC
          27759]
 gi|158450293|gb|EDP27288.1| hypothetical protein COPEUT_00809 [Coprococcus eutactus ATCC
          27759]
          Length = 90

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+++  LS+KD+   +    + + D   +GE I++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAIAEKTKLSKKDAEAALKAFTDVVADELKKGEKIQLVGFGTFEVSERPAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I   +   FKA   LK  I 
Sbjct: 61 RNPRTGETMTIAASKAPKFKAGKALKDSIN 90


>gi|26989027|ref|NP_744452.1| histone family protein DNA-binding protein [Pseudomonas putida
          KT2440]
 gi|148548674|ref|YP_001268776.1| histone family protein DNA-binding protein [Pseudomonas putida
          F1]
 gi|14028717|gb|AAK52475.1|AF345628_1 histone-like protein HU form B [Pseudomonas putida]
 gi|24983851|gb|AAN67916.1|AE016424_2 DNA-binding protein HU-beta [Pseudomonas putida KT2440]
 gi|148512732|gb|ABQ79592.1| bacterial nucleoid protein HU beta subunit [Pseudomonas putida
          F1]
 gi|313499611|gb|ADR60977.1| HupB [Pseudomonas putida BIRD-1]
          Length = 90

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  +   +  +  +G+ + +  F TF VK++  R G
Sbjct: 1  MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTFSVKERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI+  +V  FKA   LK  + 
Sbjct: 61 RNPQTGKAIKIEAAKVPGFKAGKGLKDAVN 90


>gi|153815229|ref|ZP_01967897.1| hypothetical protein RUMTOR_01463 [Ruminococcus torques ATCC
          27756]
 gi|317502314|ref|ZP_07960483.1| DNA-binding protein HU [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089918|ref|ZP_08338810.1| DNA-binding protein HU [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145847488|gb|EDK24406.1| hypothetical protein RUMTOR_01463 [Ruminococcus torques ATCC
          27756]
 gi|316896270|gb|EFV18372.1| DNA-binding protein HU [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403150|gb|EGG82711.1| DNA-binding protein HU [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 90

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I++   +S+KDS + +    + + +   +GE +++  F TF V ++ +R G
Sbjct: 1  MNKTELITAIAESADISKKDSEKALKAFVDVVTEELKKGEKVQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI+  +   FKA   LK  I 
Sbjct: 61 RNPQTGKTMKIEACKAPKFKAGKALKDAIN 90


>gi|49075042|gb|AAT49447.1| PA2738 [synthetic construct]
          Length = 101

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 1/100 (1%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ K + +E GL+++++   V   F EI  +    E +K+S F  F ++ K  R 
Sbjct: 3   ALTKAEIAKRLYEELGLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQRP 62

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           GRN +T +E+ I  RRVV F+    LK R+ +   G K  
Sbjct: 63  GRNPKTGEEIPITARRVVTFRPGQKLKARV-EAYAGTKSG 101


>gi|302388378|ref|YP_003824200.1| histone family protein DNA-binding protein [Clostridium
          saccharolyticum WM1]
 gi|302199006|gb|ADL06577.1| histone family protein DNA-binding protein [Clostridium
          saccharolyticum WM1]
          Length = 91

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  LS+KD+ + V  L + I +  V+GE I++  F TF V ++ +R G
Sbjct: 1  MNKAELIAAVAEKAELSKKDAEKAVKALTDVISEELVKGEKIQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN ++ + + I   +   FKA   LK  + 
Sbjct: 61 RNPKSGEVMNIPASKTPKFKAGKALKDMVN 90


>gi|241889358|ref|ZP_04776659.1| DNA-binding protein HU [Gemella haemolysans ATCC 10379]
 gi|317496555|ref|ZP_07954904.1| DNA-binding protein [Gemella moribillum M424]
 gi|329767598|ref|ZP_08259119.1| DNA-binding protein HU [Gemella haemolysans M341]
 gi|329768861|ref|ZP_08260289.1| DNA-binding protein HU [Gemella sanguinis M325]
 gi|241863901|gb|EER68282.1| DNA-binding protein HU [Gemella haemolysans ATCC 10379]
 gi|316913358|gb|EFV34855.1| DNA-binding protein [Gemella moribillum M424]
 gi|328837224|gb|EGF86861.1| DNA-binding protein HU [Gemella sanguinis M325]
 gi|328839225|gb|EGF88809.1| DNA-binding protein HU [Gemella haemolysans M341]
          Length = 90

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  ++++ GL +K +T  +      + ++  +GE I+I  F  F V+++ +R G
Sbjct: 1  MNKSELISKVAEKSGLQKKQATAAIEAFVETVEETLAKGEKIQIIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QTN+ ++I   +V  FKA   LK  + 
Sbjct: 61 RNPQTNEVIEIAASKVPAFKAGKALKDAVK 90


>gi|152968975|ref|YP_001334084.1| transcriptional regulator HU subunit beta [Klebsiella pneumoniae
          subsp. pneumoniae MGH 78578]
 gi|206578345|ref|YP_002240080.1| DNA-binding protein HU, beta subunit [Klebsiella pneumoniae 342]
 gi|238893389|ref|YP_002918123.1| transcriptional regulator HU subunit beta [Klebsiella pneumoniae
          NTUH-K2044]
 gi|261341041|ref|ZP_05968899.1| DNA-binding protein HU-beta [Enterobacter cancerogenus ATCC
          35316]
 gi|262042476|ref|ZP_06015635.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|288936831|ref|YP_003440890.1| histone family protein DNA-binding protein [Klebsiella variicola
          At-22]
 gi|290510113|ref|ZP_06549483.1| transcriptional regulator HU subunit alpha [Klebsiella sp.
          1_1_55]
 gi|296101562|ref|YP_003611708.1| DNA-binding protein HU-beta [Enterobacter cloacae subsp. cloacae
          ATCC 13047]
 gi|311280663|ref|YP_003942894.1| histone family protein DNA-binding protein [Enterobacter cloacae
          SCF1]
 gi|330011536|ref|ZP_08307122.1| DNA-binding protein HU-beta [Klebsiella sp. MS 92-3]
 gi|150953824|gb|ABR75854.1| DNA-binding protein HU-beta, NS1 (HU-1) [Klebsiella pneumoniae
          subsp. pneumoniae MGH 78578]
 gi|206567403|gb|ACI09179.1| DNA-binding protein HU, beta subunit [Klebsiella pneumoniae 342]
 gi|238545705|dbj|BAH62056.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp.
          pneumoniae NTUH-K2044]
 gi|259040180|gb|EEW41292.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|288316906|gb|EFC55844.1| DNA-binding protein HU-beta [Enterobacter cancerogenus ATCC
          35316]
 gi|288891540|gb|ADC59858.1| histone family protein DNA-binding protein [Klebsiella variicola
          At-22]
 gi|289776829|gb|EFD84827.1| transcriptional regulator HU subunit alpha [Klebsiella sp.
          1_1_55]
 gi|295056021|gb|ADF60759.1| DNA-binding protein HU-beta [Enterobacter cloacae subsp. cloacae
          ATCC 13047]
 gi|308749858|gb|ADO49610.1| histone family protein DNA-binding protein [Enterobacter cloacae
          SCF1]
 gi|328534153|gb|EGF60788.1| DNA-binding protein HU-beta [Klebsiella sp. MS 92-3]
          Length = 90

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  L   + +S   G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDALIASVTESLQAGDDVALVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F+A   LK  + 
Sbjct: 61 RNPQTGKEITIAAAKVPGFRAGKALKDAVN 90


>gi|157962499|ref|YP_001502533.1| histone family protein DNA-binding protein [Shewanella pealeana
          ATCC 700345]
 gi|157847499|gb|ABV87998.1| histone family protein DNA-binding protein [Shewanella pealeana
          ATCC 700345]
          Length = 90

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + +    + +    G+ I +  F TF V+Q+  R G
Sbjct: 1  MNKSELIEKIASGADISKAAAGRALDSFIGAVTEGLKEGDKIALVGFGTFEVRQRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    +  FKA   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANIPAFKAGKALKDAVN 90


>gi|262374865|ref|ZP_06068099.1| integration host factor, alpha subunit [Acinetobacter lwoffii
          SH145]
 gi|262309878|gb|EEY91007.1| integration host factor, alpha subunit [Acinetobacter lwoffii
          SH145]
          Length = 98

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 57/93 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++   +S+   L+R+++ + V   F+EI  + + GE +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEMADHLSELTSLNRREAKQMVELFFDEISQALISGEQVKLSGFGNFELRDKRQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +E+ I  RRVV F+A    ++R+ ++
Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95


>gi|49475383|ref|YP_033424.1| DNA-binding protein [Bartonella henselae str. Houston-1]
 gi|48727706|gb|AAT46133.1| Hu-like protein [Bartonella henselae]
 gi|49238189|emb|CAF27399.1| DNA-binding protein [Bartonella henselae str. Houston-1]
          Length = 91

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV S++++ G+S+  +   V      + ++   G  +++  F +F V  + +  G
Sbjct: 1  MNKSELVSSVAEKAGVSKAQAGSVVDAFIASVTEALASGGDVRLPGFGSFEVSHRAATKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T  E+ I  R V  F A   LK+ +  
Sbjct: 61 RNPSTGAEINIPARSVPKFSAGKSLKEAVNK 91


>gi|238922939|ref|YP_002936452.1| DNA-binding protein HU [Eubacterium rectale ATCC 33656]
 gi|238874611|gb|ACR74318.1| DNA-binding protein HU [Eubacterium rectale ATCC 33656]
          Length = 99

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV +++++ G+S+KD+   +    + + +   +GE I++  F TF V ++ +R G
Sbjct: 10 MNKADLVAAMAEKAGVSKKDAEASLKAFTDVVAEELKKGEKIQLVGFGTFEVSERAARTG 69

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E+ I   +   FKA   LK  + 
Sbjct: 70 RNPQTGAEMTIAASKAPKFKAGKALKDSLN 99


>gi|229074054|ref|ZP_04207110.1| DNA-binding protein HU [Bacillus cereus F65185]
 gi|229194173|ref|ZP_04321032.1| DNA-binding protein HU [Bacillus cereus ATCC 10876]
 gi|228589314|gb|EEK47274.1| DNA-binding protein HU [Bacillus cereus ATCC 10876]
 gi|228709071|gb|EEL61189.1| DNA-binding protein HU [Bacillus cereus F65185]
          Length = 93

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 53/92 (57%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +++L K ++++  L++KD+      L + I ++   GE ++I  F TF V+++ +R
Sbjct: 2  QKMNKTELTKVVAEKAELTQKDAAAATQALLDTITNALATGEKVQILGFGTFEVRERSAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E++I   +   FKA    K+ + 
Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKEFKEAVK 93


>gi|283796888|ref|ZP_06346041.1| DNA-binding protein HU [Clostridium sp. M62/1]
 gi|291075298|gb|EFE12662.1| DNA-binding protein HU [Clostridium sp. M62/1]
 gi|295089874|emb|CBK75981.1| Bacterial nucleoid DNA-binding protein [Clostridium cf.
          saccharolyticum K10]
          Length = 91

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  LS+KD+ + +    + + +  V+G  I++  F TF V ++ +R G
Sbjct: 1  MNKTELIAAVAEKAELSKKDAEKAIKAFTDTVSEELVKGGKIQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I   +   FKA   LK  + 
Sbjct: 61 RNPKTGETMPIAASKTPKFKAGKALKDMVN 90


>gi|254502221|ref|ZP_05114372.1| DNA-binding protein HU [Labrenzia alexandrii DFL-11]
 gi|222438292|gb|EEE44971.1| DNA-binding protein HU [Labrenzia alexandrii DFL-11]
          Length = 91

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++ GL++  +   V   F  + ++   G  ++I  F  F V ++ +  G
Sbjct: 1  MNKNDLIAAVAEKTGLTKAQAGEAVDASFEAVTETLKGGGEVRIIGFGNFTVSERAATEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + ++I   +   FKA   LK  + 
Sbjct: 61 RNPRTGETIQIPASKTPKFKAGKGLKDAVN 90


>gi|254785523|ref|YP_003072952.1| integration host factor subunit beta [Teredinibacter turnerae
          T7901]
 gi|259492038|sp|C5BSK5|IHFB_TERTT RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|237687093|gb|ACR14357.1| integration host factor, beta subunit [Teredinibacter turnerae
          T7901]
          Length = 98

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I++    LS KD    V  +   +      G+ I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERIAERQDQLSAKDIELAVKLILEYMSQCLANGDRIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T + V+++ + V  FK    ++ R+ + + 
Sbjct: 61 GRNPKTGESVELEGKFVPHFKPGKEMRDRVNESLE 95


>gi|28898068|ref|NP_797673.1| integration host factor subunit alpha [Vibrio parahaemolyticus
          RIMD 2210633]
 gi|153839847|ref|ZP_01992514.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          AQ3810]
 gi|260366369|ref|ZP_05778808.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          K5030]
 gi|260878417|ref|ZP_05890772.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          AN-5034]
 gi|260896996|ref|ZP_05905492.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          Peru-466]
 gi|260901794|ref|ZP_05910189.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          AQ4037]
 gi|33301264|sp|Q87Q56|IHFA_VIBPA RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|28806282|dbj|BAC59557.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          RIMD 2210633]
 gi|149746630|gb|EDM57618.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          AQ3810]
 gi|308087674|gb|EFO37369.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          Peru-466]
 gi|308091287|gb|EFO40982.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          AN-5034]
 gi|308108021|gb|EFO45561.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          AQ4037]
 gi|308113197|gb|EFO50737.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
          K5030]
 gi|328472975|gb|EGF43823.1| integration host factor subunit alpha [Vibrio parahaemolyticus
          10329]
          Length = 98

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 53/92 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L +++  + G S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAELAENLFDKLGFSKRDAKETVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARVEN 93


>gi|229021542|ref|ZP_04178141.1| DNA-binding protein HU [Bacillus cereus AH1273]
 gi|229027531|ref|ZP_04183759.1| DNA-binding protein HU [Bacillus cereus AH1272]
 gi|229112981|ref|ZP_04242483.1| DNA-binding protein HU [Bacillus cereus Rock1-15]
 gi|229164897|ref|ZP_04292713.1| DNA-binding protein HU [Bacillus cereus R309803]
 gi|228618548|gb|EEK75558.1| DNA-binding protein HU [Bacillus cereus R309803]
 gi|228670462|gb|EEL25803.1| DNA-binding protein HU [Bacillus cereus Rock1-15]
 gi|228733777|gb|EEL84543.1| DNA-binding protein HU [Bacillus cereus AH1272]
 gi|228739775|gb|EEL90173.1| DNA-binding protein HU [Bacillus cereus AH1273]
          Length = 90

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K ++++  L++KD+      + + I  +    E ++I  F TF V+++ +R G
Sbjct: 1  MNKTELTKVVAEKAELTQKDAAAATQAVLDTITTALASEEKVQILGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKDAVK 90


>gi|13476953|ref|NP_108523.1| integration host factor subunit alpha [Mesorhizobium loti
           MAFF303099]
 gi|260460934|ref|ZP_05809184.1| integration host factor, alpha subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|21362612|sp|Q982Z7|IHFA_RHILO RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|14027716|dbj|BAB54309.1| integration host factor alpha subunit [Mesorhizobium loti
           MAFF303099]
 gi|259033511|gb|EEW34772.1| integration host factor, alpha subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 107

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 49/102 (48%), Positives = 73/102 (71%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +++ ++ GLSR +S   V  + +EIC++ VRGE +K+SSFATFHV+ K  
Sbjct: 3   GKTLTRADLAEAVYRKVGLSRTESAELVEAVLDEICEAIVRGETVKLSSFATFHVRSKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           R+GRN +T +EV I PRRV+ FK+S++LK RI+   +  K  
Sbjct: 63  RIGRNPKTGEEVPILPRRVMTFKSSNVLKNRILRSHQNSKAK 104


>gi|27380130|ref|NP_771659.1| integration host factor subunit alpha [Bradyrhizobium japonicum
           USDA 110]
 gi|27353284|dbj|BAC50284.1| integration host factor alpha subunit [Bradyrhizobium japonicum
           USDA 110]
          Length = 119

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 49/99 (49%), Positives = 69/99 (69%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           SKT+TR DL +++ ++ GLSR +S+ FV  +  EI D   +GE +K+SSF +F V++KG 
Sbjct: 11  SKTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQ 70

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           R+GRN +T  EV I PRRV+VFK S+ILK+RI    R  
Sbjct: 71  RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINAQHRTN 109


>gi|294788548|ref|ZP_06753790.1| DNA-binding protein HU-beta [Simonsiella muelleri ATCC 29453]
 gi|294483425|gb|EFG31110.1| DNA-binding protein HU-beta [Simonsiella muelleri ATCC 29453]
          Length = 112

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 49/91 (53%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ +S+L+ +I+++ GL++ D+ + +    + + D+  +   I +  F +F V ++  R 
Sbjct: 6  SMNKSELIDAIAEKSGLTKTDAAKALDAFTSVVKDTLQQNGDITLVGFGSFTVAERAERQ 65

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          G N +T + + I   RV  FK    LK  ++
Sbjct: 66 GLNPKTKEPITIPAARVPKFKPGKALKDALL 96


>gi|292490562|ref|YP_003526001.1| histone family protein DNA-binding protein [Nitrosococcus
          halophilus Nc4]
 gi|291579157|gb|ADE13614.1| histone family protein DNA-binding protein [Nitrosococcus
          halophilus Nc4]
          Length = 94

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 47/94 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  ++ E  LS+ D+ R V  L   I  +      + +  F +F V+++ +R G
Sbjct: 1  MNKTELVNFVASEANLSQADAQRAVNALLQTIEQTLGEKGMVSLVGFGSFSVQKRSARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          R+ QT + + I    V VFK    LK+ +    R
Sbjct: 61 RHPQTGETITIPATNVPVFKPGKALKEAVQQRKR 94


>gi|53804258|ref|YP_113869.1| integration host factor subunit beta [Methylococcus capsulatus
          str. Bath]
 gi|81682135|sp|Q608S8|IHFB_METCA RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|53758019|gb|AAU92310.1| integration host factor, beta subunit [Methylococcus capsulatus
          str. Bath]
          Length = 95

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++S++ +   LS +D    +  +   + ++   GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIESLAGKYPHLSPRDIEHAIKEMIGCMSEALAGGERIEIRGFGSFSLHHRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T + V +  RRV  FK    L+ R+ 
Sbjct: 61 GRNPKTGESVHLPSRRVPHFKPGKELRDRVN 91


>gi|23501665|ref|NP_697792.1| integration host factor subunit alpha [Brucella suis 1330]
 gi|62289729|ref|YP_221522.1| integration host factor subunit alpha [Brucella abortus bv. 1 str.
           9-941]
 gi|82699658|ref|YP_414232.1| integration host factor subunit alpha [Brucella melitensis biovar
           Abortus 2308]
 gi|161618744|ref|YP_001592631.1| integration host factor subunit alpha [Brucella canis ATCC 23365]
 gi|189023978|ref|YP_001934746.1| integration host factor subunit alpha [Brucella abortus S19]
 gi|225852293|ref|YP_002732526.1| integration host factor subunit alpha [Brucella melitensis ATCC
           23457]
 gi|254689038|ref|ZP_05152292.1| integration host factor subunit alpha [Brucella abortus bv. 6 str.
           870]
 gi|254693521|ref|ZP_05155349.1| integration host factor subunit alpha [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697173|ref|ZP_05159001.1| integration host factor subunit alpha [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254701551|ref|ZP_05163379.1| integration host factor subunit alpha [Brucella suis bv. 5 str.
           513]
 gi|254704099|ref|ZP_05165927.1| integration host factor subunit alpha [Brucella suis bv. 3 str.
           686]
 gi|254707000|ref|ZP_05168828.1| integration host factor subunit alpha [Brucella pinnipedialis
           M163/99/10]
 gi|254709891|ref|ZP_05171702.1| integration host factor subunit alpha [Brucella pinnipedialis
           B2/94]
 gi|254713892|ref|ZP_05175703.1| integration host factor subunit alpha [Brucella ceti M644/93/1]
 gi|254717051|ref|ZP_05178862.1| integration host factor subunit alpha [Brucella ceti M13/05/1]
 gi|254718895|ref|ZP_05180706.1| integration host factor subunit alpha [Brucella sp. 83/13]
 gi|254730069|ref|ZP_05188647.1| integration host factor subunit alpha [Brucella abortus bv. 4 str.
           292]
 gi|256031384|ref|ZP_05444998.1| integration host factor subunit alpha [Brucella pinnipedialis
           M292/94/1]
 gi|256044463|ref|ZP_05447367.1| integration host factor subunit alpha [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256113307|ref|ZP_05454175.1| integration host factor subunit alpha [Brucella melitensis bv. 3
           str. Ether]
 gi|256159505|ref|ZP_05457273.1| integration host factor subunit alpha [Brucella ceti M490/95/1]
 gi|256254791|ref|ZP_05460327.1| integration host factor subunit alpha [Brucella ceti B1/94]
 gi|256257288|ref|ZP_05462824.1| integration host factor subunit alpha [Brucella abortus bv. 9 str.
           C68]
 gi|256264202|ref|ZP_05466734.1| integration host factor subunit alpha [Brucella melitensis bv. 2
           str. 63/9]
 gi|256369210|ref|YP_003106718.1| integration host factor alpha subunit [Brucella microti CCM 4915]
 gi|260168517|ref|ZP_05755328.1| integration host factor subunit alpha [Brucella sp. F5/99]
 gi|260545518|ref|ZP_05821259.1| integration host factor subunit alpha [Brucella abortus NCTC 8038]
 gi|260563814|ref|ZP_05834300.1| integration host factor subunit alpha [Brucella melitensis bv. 1
           str. 16M]
 gi|260566653|ref|ZP_05837123.1| integration host factor subunit alpha [Brucella suis bv. 4 str. 40]
 gi|260754533|ref|ZP_05866881.1| integration host factor subunit alpha [Brucella abortus bv. 6 str.
           870]
 gi|260757754|ref|ZP_05870102.1| integration host factor subunit alpha [Brucella abortus bv. 4 str.
           292]
 gi|260761579|ref|ZP_05873922.1| integration host factor subunit alpha [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883561|ref|ZP_05895175.1| integration host factor subunit alpha [Brucella abortus bv. 9 str.
           C68]
 gi|261213781|ref|ZP_05928062.1| integration host factor subunit alpha [Brucella abortus bv. 3 str.
           Tulya]
 gi|261218861|ref|ZP_05933142.1| integration host factor subunit alpha [Brucella ceti M13/05/1]
 gi|261221971|ref|ZP_05936252.1| integration host factor subunit alpha [Brucella ceti B1/94]
 gi|261314467|ref|ZP_05953664.1| integration host factor subunit alpha [Brucella pinnipedialis
           M163/99/10]
 gi|261317433|ref|ZP_05956630.1| integration host factor subunit alpha [Brucella pinnipedialis
           B2/94]
 gi|261321640|ref|ZP_05960837.1| integration host factor subunit alpha [Brucella ceti M644/93/1]
 gi|261752100|ref|ZP_05995809.1| integration host factor subunit alpha [Brucella suis bv. 5 str.
           513]
 gi|261754759|ref|ZP_05998468.1| integration host factor subunit alpha [Brucella suis bv. 3 str.
           686]
 gi|261757987|ref|ZP_06001696.1| integration host factor subunit alpha [Brucella sp. F5/99]
 gi|265983880|ref|ZP_06096615.1| integration host factor subunit alpha [Brucella sp. 83/13]
 gi|265988470|ref|ZP_06101027.1| integration host factor subunit alpha [Brucella pinnipedialis
           M292/94/1]
 gi|265990884|ref|ZP_06103441.1| integration host factor subunit alpha [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265994720|ref|ZP_06107277.1| integration host factor subunit alpha [Brucella melitensis bv. 3
           str. Ether]
 gi|265997934|ref|ZP_06110491.1| integration host factor subunit alpha [Brucella ceti M490/95/1]
 gi|294852138|ref|ZP_06792811.1| integration host factor [Brucella sp. NVSL 07-0026]
 gi|306838205|ref|ZP_07471059.1| integration host factor, alpha subunit [Brucella sp. NF 2653]
 gi|306843721|ref|ZP_07476321.1| integration host factor, alpha subunit [Brucella sp. BO1]
 gi|54037412|sp|P64391|IHFA_BRUSU RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|54041367|sp|P64390|IHFA_BRUME RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|75505311|sp|Q57DX3|IHFA_BRUAB RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|123740908|sp|Q2YNB8|IHFA_BRUA2 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|189044694|sp|A9MAF7|IHFA_BRUC2 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|226707370|sp|B2S525|IHFA_BRUA1 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|254803510|sp|C0RIB4|IHFA_BRUMB RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|23347586|gb|AAN29707.1| integration host factor, alpha subunit [Brucella suis 1330]
 gi|62195861|gb|AAX74161.1| HimA, integration host factor, alpha subunit [Brucella abortus bv.
           1 str. 9-941]
 gi|82615759|emb|CAJ10755.1| Histone-like bacterial DNA-binding protein:Integration host factor,
           alpha subunit [Brucella melitensis biovar Abortus 2308]
 gi|161335555|gb|ABX61860.1| integration host factor, alpha subunit [Brucella canis ATCC 23365]
 gi|189019550|gb|ACD72272.1| Integration host factor, alpha subunit [Brucella abortus S19]
 gi|225640658|gb|ACO00572.1| integration host factor, alpha subunit [Brucella melitensis ATCC
           23457]
 gi|255999370|gb|ACU47769.1| integration host factor alpha subunit [Brucella microti CCM 4915]
 gi|260096925|gb|EEW80800.1| integration host factor subunit alpha [Brucella abortus NCTC 8038]
 gi|260153830|gb|EEW88922.1| integration host factor subunit alpha [Brucella melitensis bv. 1
           str. 16M]
 gi|260156171|gb|EEW91251.1| integration host factor subunit alpha [Brucella suis bv. 4 str. 40]
 gi|260668072|gb|EEX55012.1| integration host factor subunit alpha [Brucella abortus bv. 4 str.
           292]
 gi|260672011|gb|EEX58832.1| integration host factor subunit alpha [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260674641|gb|EEX61462.1| integration host factor subunit alpha [Brucella abortus bv. 6 str.
           870]
 gi|260873089|gb|EEX80158.1| integration host factor subunit alpha [Brucella abortus bv. 9 str.
           C68]
 gi|260915388|gb|EEX82249.1| integration host factor subunit alpha [Brucella abortus bv. 3 str.
           Tulya]
 gi|260920555|gb|EEX87208.1| integration host factor subunit alpha [Brucella ceti B1/94]
 gi|260923950|gb|EEX90518.1| integration host factor subunit alpha [Brucella ceti M13/05/1]
 gi|261294330|gb|EEX97826.1| integration host factor subunit alpha [Brucella ceti M644/93/1]
 gi|261296656|gb|EEY00153.1| integration host factor subunit alpha [Brucella pinnipedialis
           B2/94]
 gi|261303493|gb|EEY06990.1| integration host factor subunit alpha [Brucella pinnipedialis
           M163/99/10]
 gi|261737971|gb|EEY25967.1| integration host factor subunit alpha [Brucella sp. F5/99]
 gi|261741853|gb|EEY29779.1| integration host factor subunit alpha [Brucella suis bv. 5 str.
           513]
 gi|261744512|gb|EEY32438.1| integration host factor subunit alpha [Brucella suis bv. 3 str.
           686]
 gi|262552402|gb|EEZ08392.1| integration host factor subunit alpha [Brucella ceti M490/95/1]
 gi|262765833|gb|EEZ11622.1| integration host factor subunit alpha [Brucella melitensis bv. 3
           str. Ether]
 gi|263001668|gb|EEZ14243.1| integration host factor subunit alpha [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263094446|gb|EEZ18268.1| integration host factor subunit alpha [Brucella melitensis bv. 2
           str. 63/9]
 gi|264660667|gb|EEZ30928.1| integration host factor subunit alpha [Brucella pinnipedialis
           M292/94/1]
 gi|264662472|gb|EEZ32733.1| integration host factor subunit alpha [Brucella sp. 83/13]
 gi|294820727|gb|EFG37726.1| integration host factor [Brucella sp. NVSL 07-0026]
 gi|306276031|gb|EFM57740.1| integration host factor, alpha subunit [Brucella sp. BO1]
 gi|306406714|gb|EFM62939.1| integration host factor, alpha subunit [Brucella sp. NF 2653]
          Length = 107

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 48/102 (47%), Positives = 74/102 (72%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +++ ++ GLSR +S   V  + +E+CD+ V GE +K+SSFATF V+ K  
Sbjct: 3   GKTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           R+GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+  
Sbjct: 63  RIGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQGK 104


>gi|24379067|ref|NP_721022.1| putative DNA-binding protein [Streptococcus mutans UA159]
 gi|290580914|ref|YP_003485306.1| putative DNA-binding protein [Streptococcus mutans NN2025]
 gi|14194638|sp|Q9XB21|DBH_STRMU RecName: Full=DNA-binding protein HU
 gi|5209332|gb|AAD40810.1|L40355_1 histone-like DNA-binding protein [Streptococcus mutans]
 gi|24376965|gb|AAN58328.1|AE014903_4 putative DNA-binding protein [Streptococcus mutans UA159]
 gi|254997813|dbj|BAH88414.1| putative DNA-binding protein [Streptococcus mutans NN2025]
          Length = 91

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F+ +     +GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+KI   +V  FKA   LK  + 
Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAVK 91


>gi|194334586|ref|YP_002016446.1| histone family protein DNA-binding protein [Prosthecochloris
           aestuarii DSM 271]
 gi|194312404|gb|ACF46799.1| histone family protein DNA-binding protein [Prosthecochloris
           aestuarii DSM 271]
          Length = 103

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 57/103 (55%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           MSKT T++DLV +IS   GL++ ++   V  LF  I DS   G+ I+I  F +F+++ K 
Sbjct: 1   MSKTTTKADLVNTISHTTGLTKHETEAVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKN 60

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
            R+ RN +T ++V ++ + V  FK S   K  +   ++     
Sbjct: 61  ERLARNPRTGEKVSVEAKNVPTFKISKEFKHAVSQSLQTNDAK 103


>gi|146310568|ref|YP_001175642.1| transcriptional regulator HU subunit beta [Enterobacter sp. 638]
 gi|145317444|gb|ABP59591.1| bacterial nucleoid protein HU beta subunit [Enterobacter sp. 638]
          Length = 90

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  L   + ++   G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDALIASVTETLQSGDDVALVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F+A   LK  + 
Sbjct: 61 RNPQTGKEITIAAAKVPGFRAGKALKDAVN 90


>gi|255320840|ref|ZP_05362014.1| integration host factor, alpha subunit [Acinetobacter
          radioresistens SK82]
 gi|262380267|ref|ZP_06073422.1| integration host factor, alpha subunit [Acinetobacter
          radioresistens SH164]
 gi|255302009|gb|EET81252.1| integration host factor, alpha subunit [Acinetobacter
          radioresistens SK82]
 gi|262298461|gb|EEY86375.1| integration host factor, alpha subunit [Acinetobacter
          radioresistens SH164]
          Length = 98

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 57/93 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++   +S+   L+R+++ + V   F+EI  + + GE +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEMADHLSELTSLNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +E+ I  RRVV F+A    ++R+ ++
Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95


>gi|307822661|ref|ZP_07652892.1| histone family protein DNA-binding protein [Methylobacter
          tundripaludum SV96]
 gi|307736265|gb|EFO07111.1| histone family protein DNA-binding protein [Methylobacter
          tundripaludum SV96]
          Length = 90

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I++   L++ D+ R +      +  +   G+++ +  F T+ VK++  R G
Sbjct: 1  MNKSELIDAIAESAELTKADAGRALDGFIGAVTKALSSGDSVALVGFGTYAVKERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E+ I   ++  FKA   LK  + 
Sbjct: 61 RNPQTGAEITIKAAKIPSFKAGKSLKDAVN 90


>gi|270156948|ref|ZP_06185605.1| DNA-binding protein HU-beta [Legionella longbeachae D-4968]
 gi|289164628|ref|YP_003454766.1| DNA-binding protein HU-beta [Legionella longbeachae NSW150]
 gi|269988973|gb|EEZ95227.1| DNA-binding protein HU-beta [Legionella longbeachae D-4968]
 gi|288857801|emb|CBJ11645.1| putative DNA-binding protein HU-beta [Legionella longbeachae
          NSW150]
          Length = 92

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 52/92 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV +I+   GL++ D++R + T  + I D+   G+ + I  F +F    + +R G
Sbjct: 1  MNKSELVDAIASGSGLTKADASRVLETFTSTITDALRSGDQVVIPGFGSFSTGNRSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN QT + ++I   RV  FKA   LK+ + + 
Sbjct: 61 RNPQTGKVIQIKASRVAKFKAGKNLKEAVQEA 92


>gi|254423790|ref|ZP_05037508.1| DNA-binding protein HU [Synechococcus sp. PCC 7335]
 gi|196191279|gb|EDX86243.1| DNA-binding protein HU [Synechococcus sp. PCC 7335]
          Length = 92

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 51/92 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++  +S+KD+   +T + + I +S  +G+ + +  F +F  + + +R G
Sbjct: 1  MNKAELIDMVAEKADVSKKDADVVLTAVIDSIMESVAKGDKVSLVGFGSFEPRDRKARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN QT + +KI    V  F A    K+ + D 
Sbjct: 61 RNPQTGETIKIPATTVPAFSAGKGFKQLVADA 92


>gi|262165483|ref|ZP_06033220.1| integration host factor alpha subunit [Vibrio mimicus VM223]
 gi|262025199|gb|EEY43867.1| integration host factor alpha subunit [Vibrio mimicus VM223]
          Length = 98

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 54/92 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L + + ++ G+S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAELAEDLFEKLGMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARVEN 93


>gi|170726421|ref|YP_001760447.1| integration host factor subunit alpha [Shewanella woodyi ATCC
          51908]
 gi|226709754|sp|B1KRE5|IHFA_SHEWM RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|169811768|gb|ACA86352.1| integration host factor, alpha subunit [Shewanella woodyi ATCC
          51908]
          Length = 97

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 52/93 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +  G++++ +   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAEHLFETLGINKRVAKEMVEAFFEEIRQALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +++ I  RRVV F+    LK R+ + 
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKSRVEEA 94


>gi|307546664|ref|YP_003899143.1| DNA-binding protein HU-beta [Halomonas elongata DSM 2581]
 gi|307218688|emb|CBV43958.1| K03530 DNA-binding protein HU-beta [Halomonas elongata DSM 2581]
          Length = 91

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 49/91 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LVK I+    LS+  + R +T   + +  +  +G+ + +  F TF  +++ +R G
Sbjct: 1  MNKSELVKQIATTAELSQAQAERCLTAFTDSVAKTLSQGDKLTLLGFGTFETRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E+ I   +V  FKA   LK  +  
Sbjct: 61 RNPQTGEEMTIPAAKVPAFKAGQGLKDAVKG 91


>gi|294141285|ref|YP_003557263.1| integration host factor subunit alpha [Shewanella violacea DSS12]
 gi|293327754|dbj|BAJ02485.1| integration host factor, alpha subunit [Shewanella violacea DSS12]
          Length = 98

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 54/97 (55%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ + + +  G++++ +   V T F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRQALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T +++ I  RRVV F+    LK R+ +    R
Sbjct: 62  GRNPKTGEDIPISARRVVTFRPGQKLKSRVEEANSKR 98


>gi|262374319|ref|ZP_06067595.1| integration host factor, alpha subunit [Acinetobacter junii
          SH205]
 gi|262310877|gb|EEY91965.1| integration host factor, alpha subunit [Acinetobacter junii
          SH205]
          Length = 98

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 57/93 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++   +S+   L+R+++ + V   F+EI  + + GE +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEMADHLSELTSLNRREAKQMVELFFDEISQALIGGEQVKLSGFGNFELRDKRERP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +E+ I  RRVV F+A    ++R+ ++
Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95


>gi|62290020|ref|YP_221813.1| DNA-binding protein HU [Brucella abortus bv. 1 str. 9-941]
 gi|82699948|ref|YP_414522.1| histone-like DNA-binding protein [Brucella melitensis biovar
          Abortus 2308]
 gi|148559071|ref|YP_001259027.1| DNA-binding protein HU [Brucella ovis ATCC 25840]
 gi|161619058|ref|YP_001592945.1| DNA-binding protein HRL18 [Brucella canis ATCC 23365]
 gi|163843375|ref|YP_001627779.1| DNA-binding protein HRL18 [Brucella suis ATCC 23445]
 gi|189024260|ref|YP_001935028.1| Histone-like DNA-binding protein [Brucella abortus S19]
 gi|225852607|ref|YP_002732840.1| DNA-binding protein HRL18 [Brucella melitensis ATCC 23457]
 gi|254689333|ref|ZP_05152587.1| DNA-binding protein HU-alpha [Brucella abortus bv. 6 str. 870]
 gi|254693817|ref|ZP_05155645.1| DNA-binding protein HU-alpha [Brucella abortus bv. 3 str. Tulya]
 gi|254697466|ref|ZP_05159294.1| DNA-binding protein HU-alpha [Brucella abortus bv. 2 str.
          86/8/59]
 gi|254701851|ref|ZP_05163679.1| DNA-binding protein HU-alpha [Brucella suis bv. 5 str. 513]
 gi|254704394|ref|ZP_05166222.1| DNA-binding protein HU-alpha [Brucella suis bv. 3 str. 686]
 gi|254706708|ref|ZP_05168536.1| DNA-binding protein HU-alpha [Brucella pinnipedialis M163/99/10]
 gi|254710184|ref|ZP_05171995.1| DNA-binding protein HU-alpha [Brucella pinnipedialis B2/94]
 gi|254719171|ref|ZP_05180982.1| DNA-binding protein HU-alpha [Brucella sp. 83/13]
 gi|254730363|ref|ZP_05188941.1| DNA-binding protein HU-alpha [Brucella abortus bv. 4 str. 292]
 gi|256031678|ref|ZP_05445292.1| DNA-binding protein HU-alpha [Brucella pinnipedialis M292/94/1]
 gi|256044764|ref|ZP_05447668.1| DNA-binding protein HU-alpha [Brucella melitensis bv. 1 str.
          Rev.1]
 gi|256061190|ref|ZP_05451342.1| DNA-binding protein HU-alpha [Brucella neotomae 5K33]
 gi|256113663|ref|ZP_05454474.1| DNA-binding protein HU-alpha [Brucella melitensis bv. 3 str.
          Ether]
 gi|256159834|ref|ZP_05457567.1| DNA-binding protein HU-alpha [Brucella ceti M490/95/1]
 gi|256255080|ref|ZP_05460616.1| DNA-binding protein HU-alpha [Brucella ceti B1/94]
 gi|256257579|ref|ZP_05463115.1| DNA-binding protein HU-alpha [Brucella abortus bv. 9 str. C68]
 gi|256263900|ref|ZP_05466432.1| histone family protein DNA-binding protein [Brucella melitensis
          bv. 2 str. 63/9]
 gi|256369532|ref|YP_003107042.1| DNA-binding protein HU [Brucella microti CCM 4915]
 gi|260168812|ref|ZP_05755623.1| DNA-binding protein HU-alpha [Brucella sp. F5/99]
 gi|260546573|ref|ZP_05822312.1| histone family protein DNA-binding protein [Brucella abortus NCTC
          8038]
 gi|260565634|ref|ZP_05836118.1| histone family protein DNA-binding protein [Brucella melitensis
          bv. 1 str. 16M]
 gi|260566358|ref|ZP_05836828.1| histone family protein DNA-binding protein [Brucella suis bv. 4
          str. 40]
 gi|260754849|ref|ZP_05867197.1| histone family protein DNA-binding protein [Brucella abortus bv.
          6 str. 870]
 gi|260758066|ref|ZP_05870414.1| histone family protein DNA-binding protein [Brucella abortus bv.
          4 str. 292]
 gi|260761890|ref|ZP_05874233.1| histone family protein DNA-binding protein [Brucella abortus bv.
          2 str. 86/8/59]
 gi|260883861|ref|ZP_05895475.1| histone family protein DNA-binding protein [Brucella abortus bv.
          9 str. C68]
 gi|261214100|ref|ZP_05928381.1| histone family protein DNA-binding protein [Brucella abortus bv.
          3 str. Tulya]
 gi|261222273|ref|ZP_05936554.1| histone family protein DNA-binding protein [Brucella ceti B1/94]
 gi|261314170|ref|ZP_05953367.1| histone family protein DNA-binding protein [Brucella
          pinnipedialis M163/99/10]
 gi|261317741|ref|ZP_05956938.1| histone family protein DNA-binding protein [Brucella
          pinnipedialis B2/94]
 gi|261325196|ref|ZP_05964393.1| histone family protein DNA-binding protein [Brucella neotomae
          5K33]
 gi|261752412|ref|ZP_05996121.1| histone family protein DNA-binding protein [Brucella suis bv. 5
          str. 513]
 gi|261755072|ref|ZP_05998781.1| histone family protein DNA-binding protein [Brucella suis bv. 3
          str. 686]
 gi|261758297|ref|ZP_06002006.1| histone family protein DNA-binding protein [Brucella sp. F5/99]
 gi|265984167|ref|ZP_06096902.1| histone family protein DNA-binding protein [Brucella sp. 83/13]
 gi|265988772|ref|ZP_06101329.1| histone family protein DNA-binding protein [Brucella
          pinnipedialis M292/94/1]
 gi|265991187|ref|ZP_06103744.1| histone family protein DNA-binding protein [Brucella melitensis
          bv. 1 str. Rev.1]
 gi|265995023|ref|ZP_06107580.1| histone family protein DNA-binding protein [Brucella melitensis
          bv. 3 str. Ether]
 gi|265998237|ref|ZP_06110794.1| histone family protein DNA-binding protein [Brucella ceti
          M490/95/1]
 gi|297248421|ref|ZP_06932139.1| DNA-binding protein HU-beta [Brucella abortus bv. 5 str. B3196]
 gi|306838163|ref|ZP_07471019.1| DNA-binding protein HU [Brucella sp. NF 2653]
 gi|62196152|gb|AAX74452.1| DNA-binding protein HU [Brucella abortus bv. 1 str. 9-941]
 gi|82616049|emb|CAJ11085.1| Histone-like bacterial DNA-binding protein [Brucella melitensis
          biovar Abortus 2308]
 gi|148370328|gb|ABQ60307.1| DNA-binding protein HU [Brucella ovis ATCC 25840]
 gi|161335869|gb|ABX62174.1| DNA-binding protein HRL18 [Brucella canis ATCC 23365]
 gi|163674098|gb|ABY38209.1| DNA-binding protein HRL18 [Brucella suis ATCC 23445]
 gi|189019832|gb|ACD72554.1| Histone-like bacterial DNA-binding protein [Brucella abortus S19]
 gi|225640972|gb|ACO00886.1| DNA-binding protein HRL18 [Brucella melitensis ATCC 23457]
 gi|255999694|gb|ACU48093.1| DNA-binding protein HU [Brucella microti CCM 4915]
 gi|260095623|gb|EEW79500.1| histone family protein DNA-binding protein [Brucella abortus NCTC
          8038]
 gi|260151702|gb|EEW86796.1| histone family protein DNA-binding protein [Brucella melitensis
          bv. 1 str. 16M]
 gi|260155876|gb|EEW90956.1| histone family protein DNA-binding protein [Brucella suis bv. 4
          str. 40]
 gi|260668384|gb|EEX55324.1| histone family protein DNA-binding protein [Brucella abortus bv.
          4 str. 292]
 gi|260672322|gb|EEX59143.1| histone family protein DNA-binding protein [Brucella abortus bv.
          2 str. 86/8/59]
 gi|260674957|gb|EEX61778.1| histone family protein DNA-binding protein [Brucella abortus bv.
          6 str. 870]
 gi|260873389|gb|EEX80458.1| histone family protein DNA-binding protein [Brucella abortus bv.
          9 str. C68]
 gi|260915707|gb|EEX82568.1| histone family protein DNA-binding protein [Brucella abortus bv.
          3 str. Tulya]
 gi|260920857|gb|EEX87510.1| histone family protein DNA-binding protein [Brucella ceti B1/94]
 gi|261296964|gb|EEY00461.1| histone family protein DNA-binding protein [Brucella
          pinnipedialis B2/94]
 gi|261301176|gb|EEY04673.1| histone family protein DNA-binding protein [Brucella neotomae
          5K33]
 gi|261303196|gb|EEY06693.1| histone family protein DNA-binding protein [Brucella
          pinnipedialis M163/99/10]
 gi|261738281|gb|EEY26277.1| histone family protein DNA-binding protein [Brucella sp. F5/99]
 gi|261742165|gb|EEY30091.1| histone family protein DNA-binding protein [Brucella suis bv. 5
          str. 513]
 gi|261744825|gb|EEY32751.1| histone family protein DNA-binding protein [Brucella suis bv. 3
          str. 686]
 gi|262552705|gb|EEZ08695.1| histone family protein DNA-binding protein [Brucella ceti
          M490/95/1]
 gi|262766136|gb|EEZ11925.1| histone family protein DNA-binding protein [Brucella melitensis
          bv. 3 str. Ether]
 gi|263001971|gb|EEZ14546.1| histone family protein DNA-binding protein [Brucella melitensis
          bv. 1 str. Rev.1]
 gi|263094032|gb|EEZ17966.1| histone family protein DNA-binding protein [Brucella melitensis
          bv. 2 str. 63/9]
 gi|264660969|gb|EEZ31230.1| histone family protein DNA-binding protein [Brucella
          pinnipedialis M292/94/1]
 gi|264662759|gb|EEZ33020.1| histone family protein DNA-binding protein [Brucella sp. 83/13]
 gi|297175590|gb|EFH34937.1| DNA-binding protein HU-beta [Brucella abortus bv. 5 str. B3196]
 gi|306406753|gb|EFM62976.1| DNA-binding protein HU [Brucella sp. NF 2653]
 gi|326409126|gb|ADZ66191.1| Histone-like bacterial DNA-binding protein [Brucella melitensis
          M28]
 gi|326538834|gb|ADZ87049.1| DNA-binding protein HRL18 [Brucella melitensis M5-90]
          Length = 91

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ GL++ D+   V  +   +  +   GE +++  F  F V  + +  G
Sbjct: 1  MNKNELVAAVAEKGGLTKADAGTAVDAVLASVTAALKAGEEVRLPGFGVFSVSHRAASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T +EV I  R V  F A   LK  +  
Sbjct: 61 RNPSTGKEVAIPARNVPKFSAGKGLKDAVNG 91


>gi|255019929|ref|ZP_05292003.1| Integration host factor alpha subunit [Acidithiobacillus caldus
          ATCC 51756]
 gi|254970588|gb|EET28076.1| Integration host factor alpha subunit [Acidithiobacillus caldus
          ATCC 51756]
          Length = 99

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 53/92 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++V  +    GL+++++   V + F+ I ++  RGE +K+S F  F +++K  R 
Sbjct: 2  AVTKAEIVDMLYDTMGLNKREAKGIVESFFDSIRETLARGEEVKLSGFGNFTLREKNPRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T  E+ I  RRVV F  S  LK  +  
Sbjct: 62 GRNPKTGVEITITARRVVTFHPSQKLKAYVNG 93


>gi|288941368|ref|YP_003443608.1| integration host factor subunit beta [Allochromatium vinosum DSM
           180]
 gi|288896740|gb|ADC62576.1| integration host factor, beta subunit [Allochromatium vinosum DSM
           180]
          Length = 120

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 1/109 (0%)

Query: 5   ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+  ++  +  L  KD    V  +   +  +   GE I+I  F +F +  +  R+
Sbjct: 1   MTKSELIDILAADQDHLPYKDVEEAVRKILERMSTALATGERIEIRGFGSFSLHYRPPRI 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSG 112
           GRN +T + V +  + V  FK    L+ R+    +  +     V+S  G
Sbjct: 61  GRNPKTGESVALAAKHVPHFKPGKELRDRVNLAFQDSQSPDSAVSSDDG 109


>gi|16759431|ref|NP_455048.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhi str. CT18]
 gi|16763832|ref|NP_459447.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhimurium str. LT2]
 gi|29142797|ref|NP_806139.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhi str. Ty2]
 gi|56414393|ref|YP_151468.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62179063|ref|YP_215480.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161504372|ref|YP_001571484.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|161615354|ref|YP_001589319.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167551733|ref|ZP_02345486.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA29]
 gi|167990435|ref|ZP_02571535.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar 4,[5],12:i:- str. CVM23701]
 gi|168231440|ref|ZP_02656498.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Kentucky str. CDC 191]
 gi|168237566|ref|ZP_02662624.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. SL480]
 gi|168240280|ref|ZP_02665212.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL486]
 gi|168261112|ref|ZP_02683085.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
 gi|168465545|ref|ZP_02699427.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Newport str. SL317]
 gi|168818937|ref|ZP_02830937.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Weltevreden str. HI_N05-537]
 gi|194446645|ref|YP_002039694.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Newport str. SL254]
 gi|194449059|ref|YP_002044486.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Heidelberg str. SL476]
 gi|194469706|ref|ZP_03075690.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Kentucky str. CVM29188]
 gi|194735846|ref|YP_002113482.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197249293|ref|YP_002145432.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Agona str. SL483]
 gi|197265364|ref|ZP_03165438.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA23]
 gi|197363313|ref|YP_002142950.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198246187|ref|YP_002214405.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Dublin str. CT_02021853]
 gi|200390435|ref|ZP_03217046.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Virchow str. SL491]
 gi|204930591|ref|ZP_03221521.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Javiana str. GA_MM04042433]
 gi|205351762|ref|YP_002225563.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Gallinarum str. 287/91]
 gi|207855931|ref|YP_002242582.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Enteritidis str. P125109]
 gi|213160791|ref|ZP_03346501.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhi str. E00-7866]
 gi|213419827|ref|ZP_03352893.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhi str. E01-6750]
 gi|213425853|ref|ZP_03358603.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhi str. E02-1180]
 gi|213582252|ref|ZP_03364078.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhi str. E98-0664]
 gi|213622866|ref|ZP_03375649.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhi str. E98-2068]
 gi|213646002|ref|ZP_03376055.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhi str. J185]
 gi|213850135|ref|ZP_03381033.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhi str. M223]
 gi|224582289|ref|YP_002636087.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238911418|ref|ZP_04655255.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|289811835|ref|ZP_06542464.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhi str. AG3]
 gi|60392171|sp|P0A1R8|DBHB_SALTY RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1;
          AltName: Full=NS1
 gi|60392172|sp|P0A1R9|DBHB_SALTI RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1;
          AltName: Full=NS1
 gi|25294358|pir||AF0558 DNA-binding protein HU-beta [imported] - Salmonella enterica
          subsp. enterica serovar Typhi (strain CT18)
 gi|581767|emb|CAA30692.1| unnamed protein product [Salmonella enterica subsp. enterica
          serovar Typhimurium]
 gi|16418958|gb|AAL19406.1| DNA-binding protein HU-beta, NS1 (HU-1) [Salmonella enterica
          subsp. enterica serovar Typhimurium str. LT2]
 gi|16501722|emb|CAD08910.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Typhi]
 gi|29138429|gb|AAO69999.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|56128650|gb|AAV78156.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|62126696|gb|AAX64399.1| DNA-binding protein HU-beta, NS1 (HU-1) [Salmonella enterica
          subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|160865719|gb|ABX22342.1| hypothetical protein SARI_02483 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
 gi|161364718|gb|ABX68486.1| hypothetical protein SPAB_03125 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|194405308|gb|ACF65530.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
 gi|194407363|gb|ACF67582.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL476]
 gi|194456070|gb|EDX44909.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Kentucky str. CVM29188]
 gi|194711348|gb|ACF90569.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|195631882|gb|EDX50402.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Newport str. SL317]
 gi|197094790|emb|CAR60323.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
 gi|197212996|gb|ACH50393.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Agona str. SL483]
 gi|197243619|gb|EDY26239.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA23]
 gi|197289548|gb|EDY28911.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. SL480]
 gi|197940703|gb|ACH78036.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Dublin str. CT_02021853]
 gi|199602880|gb|EDZ01426.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Virchow str. SL491]
 gi|204320525|gb|EDZ05728.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Javiana str. GA_MM04042433]
 gi|205271543|emb|CAR36361.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|205323417|gb|EDZ11256.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA29]
 gi|205330927|gb|EDZ17691.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar 4,[5],12:i:- str. CVM23701]
 gi|205333955|gb|EDZ20719.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Kentucky str. CDC 191]
 gi|205339741|gb|EDZ26505.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL486]
 gi|205344199|gb|EDZ30963.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Weltevreden str. HI_N05-537]
 gi|205350073|gb|EDZ36704.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
 gi|206707734|emb|CAR32019.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|224466816|gb|ACN44646.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
 gi|261245734|emb|CBG23531.1| DNA-binding protein Hu-beta [Salmonella enterica subsp. enterica
          serovar Typhimurium str. D23580]
 gi|267992167|gb|ACY87052.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157062|emb|CBW16546.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Typhimurium str. SL1344]
 gi|312911484|dbj|BAJ35458.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhimurium str. T000240]
 gi|320084725|emb|CBY94516.1| Integration host factor subunit beta IHF-beta [Salmonella
          enterica subsp. enterica serovar Weltevreden str.
          2007-60-3289-1]
 gi|321226029|gb|EFX51080.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Typhimurium str. TN061786]
 gi|322614729|gb|EFY11658.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 315996572]
 gi|322618835|gb|EFY15723.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 495297-1]
 gi|322623542|gb|EFY20381.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629159|gb|EFY25938.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631880|gb|EFY28634.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637383|gb|EFY34085.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642068|gb|EFY38678.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 531954]
 gi|322647887|gb|EFY44362.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str.
          NC_MB110209-0054]
 gi|322652565|gb|EFY48919.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653273|gb|EFY49606.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str.
          CASC_09SCPH15965]
 gi|322660578|gb|EFY56814.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 19N]
 gi|322664730|gb|EFY60923.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669217|gb|EFY65367.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670762|gb|EFY66895.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 414877]
 gi|322678999|gb|EFY75054.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 366867]
 gi|322682028|gb|EFY78053.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 413180]
 gi|322685143|gb|EFY81140.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 446600]
 gi|322713524|gb|EFZ05095.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Choleraesuis str. A50]
 gi|323128771|gb|ADX16201.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhimurium str. 4/74]
 gi|323192963|gb|EFZ78186.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196955|gb|EFZ82097.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 556150-1]
 gi|323203940|gb|EFZ88957.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 609460]
 gi|323206975|gb|EFZ91928.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 507440-20]
 gi|323214178|gb|EFZ98936.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 556152]
 gi|323214498|gb|EFZ99249.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323219160|gb|EGA03657.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227004|gb|EGA11185.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230178|gb|EGA14298.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233916|gb|EGA18005.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238390|gb|EGA22448.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244077|gb|EGA28086.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. 315731156]
 gi|323246238|gb|EGA30221.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251864|gb|EGA35727.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323257860|gb|EGA41539.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261126|gb|EGA44718.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264944|gb|EGA48443.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323272507|gb|EGA55914.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326622154|gb|EGE28499.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Dublin str. 3246]
 gi|326626797|gb|EGE33140.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Gallinarum str. 9]
 gi|332987400|gb|AEF06383.1| transcriptional regulator HU subunit beta [Salmonella enterica
          subsp. enterica serovar Typhimurium str. UK-1]
 gi|226110|prf||1410323A histone-like protein
          Length = 90

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L++ I+    +S+  + R +  +   + +S   G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F+A   LK  + 
Sbjct: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90


>gi|309972413|gb|ADO95614.1| DNA-binding protein HU-alpha [Haemophilus influenzae R2846]
          Length = 90

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+    L++K +   +    + I  S  +GE +++  F TF V ++ +R G
Sbjct: 1  MNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKKGEPVQLIGFGTFKVNERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I   +V  F +   LK  I 
Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAIK 90


>gi|83592888|ref|YP_426640.1| histone-like DNA-binding protein [Rhodospirillum rubrum ATCC
          11170]
 gi|83575802|gb|ABC22353.1| Histone-like DNA-binding protein [Rhodospirillum rubrum ATCC
          11170]
          Length = 91

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++   GLS+ D+ + V  +F+ I  +    + +++  F TF V ++ +  G
Sbjct: 1  MNKNDLIAAVADSAGLSKADAAKAVDGVFDAITGALKDDQEVRLVGFGTFAVTKRAATEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I   +   FK    LK  + 
Sbjct: 61 RNPRTGETIAIPASKQPKFKPGKGLKDAVN 90


>gi|85708103|ref|ZP_01039169.1| hypothetical protein NAP1_02670 [Erythrobacter sp. NAP1]
 gi|85689637|gb|EAQ29640.1| hypothetical protein NAP1_02670 [Erythrobacter sp. NAP1]
          Length = 90

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ ++++  GL++ D+   V  +F+ I  +   G+ +++  F TF V ++ + +G
Sbjct: 1  MNKNDLISAVAENSGLTKSDAANAVEGVFDAIQKALADGDEVRLVGFGTFAVAKRKASMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I       FKA   LK  + 
Sbjct: 61 RNPRTGEPMPIKASNQPKFKAGKGLKDAVN 90


>gi|153009533|ref|YP_001370748.1| histone family DNA-binding protein [Ochrobactrum anthropi ATCC
          49188]
 gi|151561421|gb|ABS14919.1| histone family protein DNA-binding protein [Ochrobactrum anthropi
          ATCC 49188]
          Length = 91

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ GL++ D+   V  +   +  +   GE +++  F  F V  + +  G
Sbjct: 1  MNKNELVAAVAEKGGLTKADAGTAVDAVLAAVTGALKAGEEVRLPGFGVFSVSHRAASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T +EV I  R V  F A   LK  +  
Sbjct: 61 RNPSTGKEVAIPARNVPKFSAGKGLKDAVNG 91


>gi|118595083|ref|ZP_01552430.1| integration host factor subunit alpha [Methylophilales bacterium
           HTCC2181]
 gi|118440861|gb|EAV47488.1| integration host factor subunit alpha [Methylophilales bacterium
           HTCC2181]
          Length = 100

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 57/99 (57%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L + +  + GL++ ++   V   F EI  +   G+++K+S F  F ++ K  R 
Sbjct: 2   TLTKAELSEILFDQVGLNKSEAKEMVEAFFEEIRSALENGDSVKLSGFGNFDLRTKAERP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           GRN +T +E+ I  RRVV F +S  LK  + +   G++ 
Sbjct: 62  GRNPKTGEEIPIKARRVVTFHSSQKLKTSVEEKTAGKQT 100


>gi|113970148|ref|YP_733941.1| integration host factor subunit alpha [Shewanella sp. MR-4]
 gi|114047662|ref|YP_738212.1| integration host factor subunit alpha [Shewanella sp. MR-7]
 gi|123029698|sp|Q0HJ83|IHFA_SHESM RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|123030574|sp|Q0HUQ0|IHFA_SHESR RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|113884832|gb|ABI38884.1| integration host factor, alpha subunit [Shewanella sp. MR-4]
 gi|113889104|gb|ABI43155.1| integration host factor, alpha subunit [Shewanella sp. MR-7]
          Length = 98

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 54/97 (55%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ + + +  G++++ +   V + F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAEMAEHLFETLGINKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T +++ I  RRVV F+    LK R+     G+
Sbjct: 62  GRNPKTGEDIPISARRVVTFRPGQKLKTRVEASNAGK 98


>gi|123430771|ref|XP_001307951.1| DNA-binding protein HU [Trichomonas vaginalis G3]
 gi|121889606|gb|EAX95021.1| DNA-binding protein HU, putative [Trichomonas vaginalis G3]
          Length = 92

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV SI+++ GL++KD+ + +      + ++   GE +++  F TF V+Q+ +R G
Sbjct: 1  MNKSELVASIAEKSGLTKKDAEQALNGFITSVQEALADGEKVQLVGFGTFEVRQRKAREG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95
          RN +  +E +KI   +  VF++   LK+ +  
Sbjct: 61 RNPRNPEEVIKIPASKAPVFRSGKALKEAVNK 92


>gi|322515115|ref|ZP_08068120.1| DNA-binding protein HU [Actinobacillus ureae ATCC 25976]
 gi|322118880|gb|EFX91067.1| DNA-binding protein HU [Actinobacillus ureae ATCC 25976]
          Length = 90

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+    LS+KD+   +      I +S  +G+A+++  F TF V ++ +R G
Sbjct: 1  MNKTELIDAIAAGAELSKKDAKAALEATLEAISESLKKGDAVQLIGFGTFKVNERNARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E+KI   +V  F A   LK  + 
Sbjct: 61 RNPRTGEEIKIAAAKVPAFVAGKALKDLVK 90


>gi|170720930|ref|YP_001748618.1| histone family protein DNA-binding protein [Pseudomonas putida
          W619]
 gi|169758933|gb|ACA72249.1| histone family protein DNA-binding protein [Pseudomonas putida
          W619]
          Length = 90

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  + + +  +   G+ + +  F TF VK++  R G
Sbjct: 1  MNKSELIDAIAASADIPKAVAGRALDAVIDSVTGALKAGDDVVLVGFGTFSVKERAERDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI   +V  FKA   LK  + 
Sbjct: 61 RNPQTGKTIKIAAAKVPGFKAGKGLKDAVN 90


>gi|15837792|ref|NP_298480.1| histone-like protein [Xylella fastidiosa 9a5c]
 gi|14194631|sp|Q9PE38|DBH_XYLFA RecName: Full=DNA-binding protein HU
 gi|9106160|gb|AAF84000.1|AE003953_4 histone-like protein [Xylella fastidiosa 9a5c]
          Length = 94

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++    LS+ ++ R +  + NEI ++  +G+++ +  F TF V+ +  R G
Sbjct: 1  MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKKGDSVTLVGFGTFQVRPRAERPG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN ++ + + I       FK    LK  + 
Sbjct: 61 RNPKSGELIMIAASNNPSFKPGKALKDAVK 90


>gi|229077218|ref|ZP_04209912.1| DNA-binding protein HU [Bacillus cereus Rock4-18]
 gi|229119652|ref|ZP_04248924.1| DNA-binding protein HU [Bacillus cereus Rock1-3]
 gi|228663818|gb|EEL19387.1| DNA-binding protein HU [Bacillus cereus Rock1-3]
 gi|228706049|gb|EEL58344.1| DNA-binding protein HU [Bacillus cereus Rock4-18]
          Length = 93

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 53/92 (57%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +++L+K ++ +  L++KD+      + + I ++    E ++I  F TF V+++ +R
Sbjct: 2  QKMNKTELIKVVADKAELTQKDAATATQAVLDAITNTLANEEKVQILGFGTFEVRERSAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E++I   +   FKA   LK+ + 
Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93


>gi|291460214|ref|ZP_06599604.1| DNA-binding protein HU [Oribacterium sp. oral taxon 078 str.
          F0262]
 gi|291417161|gb|EFE90880.1| DNA-binding protein HU [Oribacterium sp. oral taxon 078 str.
          F0262]
          Length = 95

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R DLV +++K+  LS+KD+   V  +F+ I +S  + E +++  F TF V ++ +R G
Sbjct: 6  MNRMDLVAAVAKKAELSKKDAEAAVKAVFDSISESLEKDEKVQLIGFGTFEVSKRAAREG 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + +KI   +   FKA   LK RI 
Sbjct: 66 RNPRTGETMKIAESKAPRFKAGKALKDRIN 95


>gi|149910317|ref|ZP_01898961.1| DNA-binding protein, HU family [Moritella sp. PE36]
 gi|149806677|gb|EDM66644.1| DNA-binding protein, HU family [Moritella sp. PE36]
          Length = 91

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  ++ +  +S+  + R +  +   + ++ V  E++ +  F TF V+ + +R G
Sbjct: 1  MNKAQLIDCVAAKADISKAAAGRAIDAMIESVTETLVTEESVTLVGFGTFSVRDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I   ++  FKA  +LK  + 
Sbjct: 61 RNPQTGAEIQIAASKLPAFKAGKLLKDALK 90


>gi|260768664|ref|ZP_05877598.1| integration host factor alpha subunit [Vibrio furnissii CIP
          102972]
 gi|260616694|gb|EEX41879.1| integration host factor alpha subunit [Vibrio furnissii CIP
          102972]
 gi|315180366|gb|ADT87280.1| integration host factor subunit alpha [Vibrio furnissii NCTC
          11218]
          Length = 97

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 54/92 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ ++ G S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKADLAENLFEKLGFSKRDAKETVEVFFEEIRKALEGGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARVEN 93


>gi|254469062|ref|ZP_05082468.1| DNA-binding protein HU-beta [beta proteobacterium KB13]
 gi|207087872|gb|EDZ65155.1| DNA-binding protein HU-beta [beta proteobacterium KB13]
          Length = 90

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+++I+   G ++ D+ R +      I  +  +G+ + +  F TF V ++ +R G
Sbjct: 1  MNKGELIEAIASATGSTKADAGRALDATIENITKALKKGDTVTLIGFGTFKVSKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E+KI  R+V  FKA + LK  + 
Sbjct: 61 RNPQTGAELKIPARKVPSFKAGAGLKDAVN 90


>gi|21673001|ref|NP_661066.1| DNA-binding protein HU-beta [Chlorobium tepidum TLS]
 gi|21646065|gb|AAM71408.1| DNA-binding protein HU-beta [Chlorobium tepidum TLS]
          Length = 91

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++++L + I+++ GL++ D+ R V    N +  +   G+ + +  F TF    +  R G
Sbjct: 1  MSKAELAEKIAEQTGLTKADAERAVNAFINVVTSTLKSGDDVTLVGFGTFTTGDRAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I  ++VV FK    LK+ +
Sbjct: 61 RNPQTGKTITIAAKKVVKFKPGKALKEEV 89


>gi|189345899|ref|YP_001942428.1| histone family protein DNA-binding protein [Chlorobium limicola DSM
           245]
 gi|189340046|gb|ACD89449.1| histone family protein DNA-binding protein [Chlorobium limicola DSM
           245]
          Length = 102

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 57/102 (55%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           M  T T++DLV +I+ + G+++ ++   V  LF  I +S   G+ I+I  F +F+++ K 
Sbjct: 1   MGNTTTKADLVNAIAHKTGMTKNETEAVVDCLFESIIESLKAGKRIEIRGFGSFNIRHKN 60

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
            R  RN +T ++V +DP+ V  FK S   K  + + ++    
Sbjct: 61  LRQARNPRTGEKVTVDPKNVPTFKISKEFKHAVSESLKNGTA 102


>gi|332529089|ref|ZP_08405053.1| integration host factor subunit alpha [Hylemonella gracilis ATCC
           19624]
 gi|332041312|gb|EGI77674.1| integration host factor subunit alpha [Hylemonella gracilis ATCC
           19624]
          Length = 107

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 56/93 (60%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +  +T++ L + + ++ GL++++S   +   F+ I +    G+ +KIS F  F ++ K +
Sbjct: 10  TPALTKAHLAELLFEQIGLNKRESKDMIDAFFDLIAERLTEGQDVKISGFGNFQIRTKAA 69

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           R GRN +T + + I+ R+VV F AS  LK++I 
Sbjct: 70  RPGRNPRTGEAIPIEARKVVTFHASHKLKEQIQ 102


>gi|167621360|ref|ZP_02389991.1| Bacterial nucleoid DNA-binding protein [Burkholderia
          thailandensis Bt4]
          Length = 90

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  ++ E GL++ DS   +  +   I  +  +G  + ++ F  F V  + +R G
Sbjct: 1  MNKADLINHVAAETGLTKADSGFALEAVLEGITKALRKGGTVTLTGFGVFSVGARAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T +E+KI   +   FKA   LK  + 
Sbjct: 61 RNPATGEEIKIPASKAPKFKAGKGLKDAVK 90


>gi|39933146|ref|NP_945422.1| integration host factor subunit beta [Rhodopseudomonas palustris
           CGA009]
 gi|192288502|ref|YP_001989107.1| integration host factor subunit beta [Rhodopseudomonas palustris
           TIE-1]
 gi|81698457|sp|Q6NDN9|IHFB_RHOPA RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|226709804|sp|B3Q602|IHFB_RHOPT RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|39652771|emb|CAE25510.1| integration host factor beta chain [Rhodopseudomonas palustris
           CGA009]
 gi|192282251|gb|ACE98631.1| integration host factor, beta subunit [Rhodopseudomonas palustris
           TIE-1]
          Length = 104

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 2/105 (1%)

Query: 5   ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV+ I++    L ++D    V  + +EI D+  RG+ +++  F  F VK + +R 
Sbjct: 1   MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARA 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT 108
           GRN +T   V +D + V  FK    +++R+  D  G      D  
Sbjct: 61  GRNPRTGAHVPVDQKTVPFFKTGKEMRERLNRD-SGDDAPTSDTA 104


>gi|146307010|ref|YP_001187475.1| integration host factor subunit alpha [Pseudomonas mendocina ymp]
 gi|166918516|sp|A4XTS7|IHFA_PSEMY RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|145575211|gb|ABP84743.1| integration host factor, alpha subunit [Pseudomonas mendocina
          ymp]
          Length = 100

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 52/91 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + +E GL+++++   V   F EI  +    E +K+S F  F ++ K  R 
Sbjct: 3  ALTKAEMAERLYEELGLNKREAKELVELFFEEIRQALELNEQVKLSGFGNFDLRDKRQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  RRVV F+    LK R+ 
Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARVE 93


>gi|226324137|ref|ZP_03799655.1| hypothetical protein COPCOM_01915 [Coprococcus comes ATCC 27758]
 gi|225207686|gb|EEG90040.1| hypothetical protein COPCOM_01915 [Coprococcus comes ATCC 27758]
          Length = 91

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++  +S+KD+ + +    + + +   +GE +++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAVAEQADISKKDAEKVLKAFVDVVTEEMKKGEKVQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI+  +   FKA   LK  + 
Sbjct: 61 RNPQTGKTMKIEACKAPKFKAGKALKDAVN 90


>gi|167759629|ref|ZP_02431756.1| hypothetical protein CLOSCI_01987 [Clostridium scindens ATCC
          35704]
 gi|167662755|gb|EDS06885.1| hypothetical protein CLOSCI_01987 [Clostridium scindens ATCC
          35704]
          Length = 91

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+ +  LS+KDS + +    + + D   +   +++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAIADQAELSKKDSEKALKAFIDVVTDELKKDHKVQLVGFGTFEVSKRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI+  +   FKA   LK  + 
Sbjct: 61 RNPQTGKTMKIEACKAPKFKAGKALKDAVN 90


>gi|85373566|ref|YP_457628.1| histone-like protein [Erythrobacter litoralis HTCC2594]
 gi|84786649|gb|ABC62831.1| histone-like protein [Erythrobacter litoralis HTCC2594]
          Length = 90

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++   GLS+ D++  V  +F+ I  +   G+ +++  F TF V ++ +  G
Sbjct: 1  MNKNDLISAVADASGLSKSDASGAVEGVFDSITKALSNGDEVRLVGFGTFSVARRKASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I       FKA   LK  + 
Sbjct: 61 RNPRTGEPMTIKASNQPKFKAGKGLKDAVN 90


>gi|332525932|ref|ZP_08402073.1| integration host factor alpha-subunit [Rubrivivax benzoatilyticus
           JA2]
 gi|332109483|gb|EGJ10406.1| integration host factor alpha-subunit [Rubrivivax benzoatilyticus
           JA2]
          Length = 119

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 53/99 (53%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+T+++L   +    GL++++S   V   F  +  + V G+ +K+S F  F++++K  
Sbjct: 17  TPTLTKAELADLLFDRLGLNKRESKDMVEAFFEIVHGTLVEGDDVKLSGFGNFNIRRKAP 76

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           R GRN +T + + I  R VV F AS  LK  +  D    
Sbjct: 77  RPGRNPRTGELIPIKARNVVTFHASHKLKAIVQGDTPAE 115


>gi|75674257|ref|YP_316678.1| integration host factor subunit beta [Nitrobacter winogradskyi
           Nb-255]
 gi|123759426|sp|Q3SWL5|IHFB_NITWN RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|74419127|gb|ABA03326.1| integration host factor, beta subunit [Nitrobacter winogradskyi
           Nb-255]
          Length = 101

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 1/100 (1%)

Query: 5   ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV+ I++    L ++D    V  + +EI  +  RG+ +++  F  F VK + +R 
Sbjct: 1   MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           GRN +T + V +D + V  FK    +++R+  D    + N
Sbjct: 61  GRNPRTGEHVPVDQKSVPFFKTGKEMRERLNRDNATSEAN 100


>gi|110680344|ref|YP_683351.1| integration host factor subunit alpha [Roseobacter denitrificans
           OCh 114]
 gi|109456460|gb|ABG32665.1| integration host factor, alpha subunit [Roseobacter denitrificans
           OCh 114]
          Length = 112

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 67/96 (69%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR DL +++ +E GLSR +S + V ++   + D+ V GE +KISSF TF V+ K +R
Sbjct: 16  KTLTRMDLSEAVFREVGLSRNESAQLVESVLEHLSDALVNGEQVKISSFGTFSVRDKSAR 75

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           VGRN +T +EV I+PRRV+ F+ S ++K R+ +  +
Sbjct: 76  VGRNPKTGEEVPINPRRVLTFRPSHLMKDRVANGNK 111


>gi|288575052|ref|ZP_06393409.1| histone family protein DNA-binding protein [Dethiosulfovibrio
          peptidovorans DSM 11002]
 gi|288570793|gb|EFC92350.1| histone family protein DNA-binding protein [Dethiosulfovibrio
          peptidovorans DSM 11002]
          Length = 91

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 58/91 (63%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L+++++K   LS+K +   V+ +   + ++ V+GE +++  F TF V+++ +R G
Sbjct: 1  MTKTELIEAVAKSAELSKKAAGEAVSAVLESVEEALVKGEKVQLVGFGTFEVRERAARTG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIM 94
          RN Q  ++ ++I  ++V VF+    LK R+ 
Sbjct: 61 RNPQDPEKTIEIPAKKVPVFRPGKALKDRVN 91


>gi|84387194|ref|ZP_00990216.1| integration host factor alpha subunit [Vibrio splendidus 12B01]
 gi|86146820|ref|ZP_01065140.1| integration host factor alpha subunit [Vibrio sp. MED222]
 gi|148975883|ref|ZP_01812672.1| integration host factor subunit alpha [Vibrionales bacterium
          SWAT-3]
 gi|218709710|ref|YP_002417331.1| Integration host factor, alpha subunit [Vibrio splendidus LGP32]
 gi|254803524|sp|B7VPF6|IHFA_VIBSL RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|84378055|gb|EAP94916.1| integration host factor alpha subunit [Vibrio splendidus 12B01]
 gi|85835470|gb|EAQ53608.1| integration host factor alpha subunit [Vibrio sp. MED222]
 gi|145964628|gb|EDK29881.1| integration host factor subunit alpha [Vibrionales bacterium
          SWAT-3]
 gi|218322729|emb|CAV18905.1| Integration host factor, alpha subunit [Vibrio splendidus LGP32]
          Length = 98

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 54/92 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DL +++ +  G S++D+   V   F E+  +   GE +K+S F  F +++K  R 
Sbjct: 2  ALTKADLAENLFETLGYSKRDAKETVEVFFEEVRKALENGEQVKLSGFGNFDLREKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVEN 93


>gi|95930400|ref|ZP_01313136.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM
          684]
 gi|95133440|gb|EAT15103.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM
          684]
          Length = 90

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV +I+++  LS+ DS + +    + + ++   G+ I +  F TF V  + +RVG
Sbjct: 1  MTKTELVTAIAEKAELSKSDSEKALKAFVDTVTEALKGGDKIALVGFGTFSVGDRAARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT  E+KI   +V  FKA   LK  + 
Sbjct: 61 KNPQTGAEIKIPAAKVPKFKAGKALKDAVN 90


>gi|254714182|ref|ZP_05175993.1| DNA-binding protein HRL18 [Brucella ceti M644/93/1]
 gi|254717617|ref|ZP_05179428.1| DNA-binding protein HRL18 [Brucella ceti M13/05/1]
 gi|261219453|ref|ZP_05933734.1| histone family protein DNA-binding protein [Brucella ceti
          M13/05/1]
 gi|261321949|ref|ZP_05961146.1| histone family protein DNA-binding protein [Brucella ceti
          M644/93/1]
 gi|260924542|gb|EEX91110.1| histone family protein DNA-binding protein [Brucella ceti
          M13/05/1]
 gi|261294639|gb|EEX98135.1| histone family protein DNA-binding protein [Brucella ceti
          M644/93/1]
          Length = 91

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ GL++ D+   V  +   +  +   GE +++  F  F V  + +  G
Sbjct: 1  MNKNELVAAVAEKGGLTKTDAGTAVDAVLASVTAALKAGEEVRLPGFGVFSVSHRAASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T +EV I  R V  F A   LK  +  
Sbjct: 61 RNPSTGKEVAIPARNVPKFSAGKGLKDAVNG 91


>gi|190015583|ref|YP_001967304.1| DNA-binding protein HU [Bacillus cereus]
 gi|208702183|ref|YP_002267334.1| DNA-binding protein HU 1 [Bacillus cereus H3081.97]
 gi|217956824|ref|YP_002335918.1| DNA-binding protein HU 1 [Bacillus cereus AH187]
 gi|229142798|ref|ZP_04271251.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26]
 gi|116584490|gb|ABK00607.1| DNA-binding protein HU [Bacillus cereus]
 gi|208658038|gb|ACI30408.1| DNA-binding protein HU 1 [Bacillus cereus H3081.97]
 gi|217068469|gb|ACJ82717.1| DNA-binding protein HU 1 [Bacillus cereus AH187]
 gi|228640666|gb|EEK97044.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26]
          Length = 90

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL K I+++  L++KD+      + + I  +    E ++I  F TF V+++ +R G
Sbjct: 1  MNKTDLTKVIAEKAELTQKDAAAATQAVLDTITTALANEEKVQILGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +   FKA   LK  + 
Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELKDAVK 90


>gi|157146943|ref|YP_001454262.1| transcriptional regulator HU subunit beta [Citrobacter koseri
          ATCC BAA-895]
 gi|237730417|ref|ZP_04560898.1| transcriptional regulator HU subunit beta [Citrobacter sp. 30_2]
 gi|283834241|ref|ZP_06353982.1| DNA-binding protein HU-beta [Citrobacter youngae ATCC 29220]
 gi|157084148|gb|ABV13826.1| hypothetical protein CKO_02720 [Citrobacter koseri ATCC BAA-895]
 gi|226905956|gb|EEH91874.1| transcriptional regulator HU subunit beta [Citrobacter sp. 30_2]
 gi|291069760|gb|EFE07869.1| DNA-binding protein HU-beta [Citrobacter youngae ATCC 29220]
          Length = 90

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + +S   G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F+A   LK  + 
Sbjct: 61 RNPQTGKEITIAAAKVPGFRAGKALKDAVN 90


>gi|254499149|ref|ZP_05111836.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254351628|gb|EET10476.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 92

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 52/92 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV +I+   GL++ D++R + T  + I D+   G+ + I  F +F    + +R G
Sbjct: 1  MNKSELVDAIASGSGLTKADASRVLETFTSTITDALKSGDQVVIPGFGSFSTGNRSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN QT + ++I   RV  FKA   LK+ + + 
Sbjct: 61 RNPQTGKVIEIKASRVAKFKAGKNLKEAVQEA 92


>gi|15675394|ref|NP_269568.1| histone-like DNA-binding protein [Streptococcus pyogenes M1 GAS]
 gi|21910682|ref|NP_664950.1| putative histone-like DNA-binding protein [Streptococcus pyogenes
          MGAS315]
 gi|28895628|ref|NP_801978.1| histone-like DNA-binding protein [Streptococcus pyogenes SSI-1]
 gi|50914589|ref|YP_060561.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10394]
 gi|71903824|ref|YP_280627.1| DNA-binding protein HU [Streptococcus pyogenes MGAS6180]
 gi|71911036|ref|YP_282586.1| DNA-binding protein HU [Streptococcus pyogenes MGAS5005]
 gi|94988847|ref|YP_596948.1| DNA-binding protein HU [Streptococcus pyogenes MGAS9429]
 gi|94990748|ref|YP_598848.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10270]
 gi|94992738|ref|YP_600837.1| DNA-binding protein HU [Streptococcus pyogenes MGAS2096]
 gi|94994725|ref|YP_602823.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10750]
 gi|139473485|ref|YP_001128201.1| DNA-binding protein HU [Streptococcus pyogenes str. Manfredo]
 gi|209559658|ref|YP_002286130.1| DNA-binding protein HU [Streptococcus pyogenes NZ131]
 gi|306827059|ref|ZP_07460357.1| DNA-binding protein HU [Streptococcus pyogenes ATCC 10782]
 gi|61222559|sp|P0A3I0|DBH_STRP3 RecName: Full=DNA-binding protein HU
 gi|73919007|sp|Q5XB35|DBH_STRP6 RecName: Full=DNA-binding protein HU
 gi|73919008|sp|P0C097|DBH_STRP8 RecName: Full=DNA-binding protein HU
 gi|76365063|sp|P0C0H2|DBH_STRPY RecName: Full=DNA-binding protein HU
 gi|81175249|sp|P0C0H3|DBH_STRP1 RecName: Full=DNA-binding protein HU
 gi|5209328|gb|AAD40808.1|L38946_1 histone-like DNA-binding protein [Streptococcus pyogenes]
 gi|13622579|gb|AAK34289.1| histone-like DNA-binding protein [Streptococcus pyogenes M1 GAS]
 gi|21904884|gb|AAM79753.1| putative histone-like DNA-binding protein [Streptococcus pyogenes
          MGAS315]
 gi|28810877|dbj|BAC63811.1| putative histone-like DNA-binding protein [Streptococcus pyogenes
          SSI-1]
 gi|50903663|gb|AAT87378.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10394]
 gi|71802919|gb|AAX72272.1| DNA-binding protein HU [Streptococcus pyogenes MGAS6180]
 gi|71853818|gb|AAZ51841.1| DNA-binding protein HU [Streptococcus pyogenes MGAS5005]
 gi|94542355|gb|ABF32404.1| DNA-binding protein HU [Streptococcus pyogenes MGAS9429]
 gi|94544256|gb|ABF34304.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10270]
 gi|94546246|gb|ABF36293.1| DNA-binding protein HU [Streptococcus pyogenes MGAS2096]
 gi|94548233|gb|ABF38279.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10750]
 gi|134271732|emb|CAM29965.1| DNA-binding protein HU [Streptococcus pyogenes str. Manfredo]
 gi|209540859|gb|ACI61435.1| DNA-binding protein HU [Streptococcus pyogenes NZ131]
 gi|304430805|gb|EFM33816.1| DNA-binding protein HU [Streptococcus pyogenes ATCC 10782]
          Length = 91

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 48/89 (53%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F+ I      GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFSTIEAFLAEGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E++I   +V  FKA   LK  + 
Sbjct: 63 NPQTGAEIEIAASKVPAFKAGKALKDAVK 91


>gi|87200378|ref|YP_497635.1| integration host factor, alpha subunit [Novosphingobium
          aromaticivorans DSM 12444]
 gi|87136059|gb|ABD26801.1| integration host factor, alpha subunit [Novosphingobium
          aromaticivorans DSM 12444]
          Length = 98

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 43/90 (47%), Positives = 61/90 (67%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+DL +SI++  GLSR DS   V ++   +CD+   G+ +KIS F TF ++ K  R+
Sbjct: 6  TLTRADLAESINRRVGLSRADSLEMVESILQHMCDALADGQNVKISGFGTFLLRDKAERI 65

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  EV I PRRV+ F+AS +LK RI
Sbjct: 66 GRNPKTGIEVPITPRRVLSFRASQMLKDRI 95


>gi|39935809|ref|NP_948085.1| integration host factor subunit alpha [Rhodopseudomonas palustris
           CGA009]
 gi|192291397|ref|YP_001992002.1| integration host factor subunit alpha [Rhodopseudomonas palustris
           TIE-1]
 gi|81698181|sp|Q6N676|IHFA_RHOPA RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|226709744|sp|B3QJM1|IHFA_RHOPT RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|39649662|emb|CAE28184.1| integration host factor alpha subunit [Rhodopseudomonas palustris
           CGA009]
 gi|192285146|gb|ACF01527.1| integration host factor, alpha subunit [Rhodopseudomonas palustris
           TIE-1]
          Length = 118

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 52/115 (45%), Positives = 76/115 (66%), Gaps = 4/115 (3%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            +T+TR DL +++ ++ GLSR +S+ FV  +  EI D   RGE +K+SSF +F V+QKG 
Sbjct: 3   GRTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFLVRQKGQ 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD----MRGRKCNKDDVTSPSG 112
           R+GRN +T  EV I PRRV+VFK S+ILK+RI  +    M   + +++   S SG
Sbjct: 63  RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINANGAMPMSTEESDENTAQSASG 117


>gi|110597798|ref|ZP_01386081.1| Histone-like bacterial DNA-binding protein [Chlorobium
          ferrooxidans DSM 13031]
 gi|110340523|gb|EAT59006.1| Histone-like bacterial DNA-binding protein [Chlorobium
          ferrooxidans DSM 13031]
          Length = 102

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 55/98 (56%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M  T T++DLV  I+   GL++ ++   V  LF  I DS   G+ I+I  F +F+++ K 
Sbjct: 1  MGNTTTKADLVNVIAHRTGLTKNETESVVDCLFESIIDSLKSGKRIEIRGFGSFNIRYKN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           R  RN +T ++V +DP+ V  FK S   K  + + ++
Sbjct: 61 LRQARNPRTGEKVTVDPKNVPTFKISKEFKHAVSESLK 98


>gi|89900357|ref|YP_522828.1| histone-like protein DNA-binding protein [Rhodoferax
          ferrireducens T118]
 gi|89345094|gb|ABD69297.1| histone-like DNA-binding protein [Rhodoferax ferrireducens T118]
          Length = 103

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDL++ ++  FG L+R+D+   V  + + I D+ VRG  I+I  F +F +  +  R+
Sbjct: 1  MTRSDLIEELAARFGQLTRRDAEFAVKAILDAINDALVRGHRIEIRGFGSFAINHRPPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +  + V I  +RV+ FK    L++ +
Sbjct: 61 GRNPRNGESVAIPEKRVLHFKPGKALREAV 90


>gi|88798824|ref|ZP_01114407.1| DNA-binding protein HU [Reinekea sp. MED297]
 gi|88778587|gb|EAR09779.1| DNA-binding protein HU [Reinekea sp. MED297]
          Length = 90

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++    +S+  + R +  + + + ++   G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAVAAAADISKASAGRALDAMVDSVTNALKEGDQVVLVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGEPIQIAAAKVPGFKAGKALKDAVN 90


>gi|189500914|ref|YP_001960384.1| histone family protein DNA-binding protein [Chlorobium
          phaeobacteroides BS1]
 gi|189496355|gb|ACE04903.1| histone family protein DNA-binding protein [Chlorobium
          phaeobacteroides BS1]
          Length = 99

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 56/98 (57%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M  T T++DLV +IS   GL++ ++   V  LF+ I DS   G+ I+I  F +F+++ K 
Sbjct: 1  MGNTTTKADLVNTISHRTGLTKHETESVVDCLFDSIIDSLKAGKRIEIRGFGSFNIRYKN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           R+ RN +T ++V +D + V  FK S   K  +   ++
Sbjct: 61 ERLARNPRTGEKVSVDAKNVPTFKISKEFKSAVSQSLK 98


>gi|117920310|ref|YP_869502.1| integration host factor subunit alpha [Shewanella sp. ANA-3]
 gi|166918528|sp|A0KWC7|IHFA_SHESA RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|117612642|gb|ABK48096.1| integration host factor, alpha subunit [Shewanella sp. ANA-3]
          Length = 98

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 54/97 (55%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ + + +  G++++ +   V + F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAEMAEHLFETLGINKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T +++ I  RRVV F+    LK R+     G+
Sbjct: 62  GRNPKTGEDIPISARRVVTFRPGQKLKTRVEAANAGK 98


>gi|148264666|ref|YP_001231372.1| histone family protein DNA-binding protein [Geobacter
          uraniireducens Rf4]
 gi|146398166|gb|ABQ26799.1| histone family protein DNA-binding protein [Geobacter
          uraniireducens Rf4]
          Length = 92

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 59/91 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I ++ G S+K+S   V T+F+ I ++   G+ IKI+ F  F VK+K  R G
Sbjct: 1  MTKADIVERIYEKVGFSKKESAELVETVFDLIKNTLEDGDKIKIAGFGNFVVKEKADRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E+ I  R+++ FK S +LK  I +
Sbjct: 61 RNPQTGEEITISARKILTFKPSQVLKAAINN 91


>gi|332529386|ref|ZP_08405347.1| integration host factor subunit beta [Hylemonella gracilis ATCC
          19624]
 gi|332041184|gb|EGI77549.1| integration host factor subunit beta [Hylemonella gracilis ATCC
          19624]
          Length = 100

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 55/93 (59%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDLV++++  F  L+ +D+   V  + + + D+ VRG  I+I  F +F + ++  R+
Sbjct: 1  MTRSDLVEALAARFEQLTHRDAESAVKAILDAMNDALVRGRRIEIRGFGSFSINRRPPRM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN ++ + V I  +RV  FK    L++ + + 
Sbjct: 61 GRNPRSGESVAIPEKRVPHFKPGKALREAVDES 93


>gi|116251406|ref|YP_767244.1| integration host factor subunit alpha [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|123081976|sp|Q1MIS5|IHFA_RHIL3 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|115256054|emb|CAK07135.1| putative integration host factor alpha-subunit [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 112

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 52/102 (50%), Positives = 73/102 (71%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +S+ ++ GLSR +S   V T+ +EIC++ VRGE +K+SSFATF V+ K  
Sbjct: 3   GKTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           R+GRN +T +EV I PRRV+ FKAS++LK RI+     RK  
Sbjct: 63  RIGRNPKTGEEVPISPRRVMTFKASNVLKTRILKSHVARKIK 104


>gi|260596812|ref|YP_003209383.1| DNA-binding protein HU-beta [Cronobacter turicensis z3032]
 gi|260215989|emb|CBA28644.1| DNA-binding protein HU-beta [Cronobacter turicensis z3032]
          Length = 113

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +S L+  I+    +S+  + R +  L + + +S   G+ + +  F TF V+++ +R G
Sbjct: 24  VNKSQLIDKIAAGADISKAAAGRALDALIDSVTESLQSGDEVALVGFGTFAVRERAARTG 83

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN QT +E+ I   +V  F+A   LK  + 
Sbjct: 84  RNPQTGKEITIAAAKVPGFRAGKALKDAVN 113


>gi|215778378|ref|YP_002261518.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238]
 gi|208011423|emb|CAQ81887.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238]
          Length = 91

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLV  I+    LS++++T  +      I ++   GE + +  F TF V  + +R G
Sbjct: 1  MNKKDLVSHIADIADLSQQEATAALNATVESITNALKNGEEVTLIGFGTFKVNPRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T   ++I    +  FKA   LK+ + +
Sbjct: 61 RNPKTGDTIQIAASNMPAFKAGKALKEAVNE 91


>gi|158423917|ref|YP_001525209.1| integration host factor subunit alpha [Azorhizobium caulinodans
          ORS 571]
 gi|172047953|sp|A8I5K8|IHFA_AZOC5 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|158330806|dbj|BAF88291.1| integration host factor alpha subunit [Azorhizobium caulinodans
          ORS 571]
          Length = 105

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 48/94 (51%), Positives = 66/94 (70%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +TITR+DL +++ ++ GLSR +S   V  +  EI D   +GE +K+SSF +F V+ KG 
Sbjct: 3  GRTITRADLCEAVYQQVGLSRTESAALVEMVLREIADCLAKGETVKLSSFGSFVVRDKGQ 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RVGRN +T +EV I+PRRV+VFK SSILK RI  
Sbjct: 63 RVGRNPKTGEEVPIEPRRVMVFKPSSILKNRING 96


>gi|259500655|ref|ZP_05743557.1| DNA-binding protein HU [Lactobacillus iners DSM 13335]
 gi|302191344|ref|ZP_07267598.1| DNA-binding protein HU [Lactobacillus iners AB-1]
 gi|309804184|ref|ZP_07698262.1| DNA-binding protein HU [Lactobacillus iners LactinV 11V1-d]
 gi|309805716|ref|ZP_07699756.1| DNA-binding protein HU [Lactobacillus iners LactinV 09V1-c]
 gi|309806743|ref|ZP_07700737.1| DNA-binding protein HU [Lactobacillus iners LactinV 03V1-b]
 gi|309809245|ref|ZP_07703114.1| DNA-binding protein HU [Lactobacillus iners SPIN 2503V10-D]
 gi|312871445|ref|ZP_07731540.1| DNA-binding protein HU [Lactobacillus iners LEAF 3008A-a]
 gi|312872380|ref|ZP_07732450.1| DNA-binding protein HU [Lactobacillus iners LEAF 2062A-h1]
 gi|312873981|ref|ZP_07734017.1| DNA-binding protein HU [Lactobacillus iners LEAF 2052A-d]
 gi|312875460|ref|ZP_07735463.1| DNA-binding protein HU [Lactobacillus iners LEAF 2053A-b]
 gi|315653510|ref|ZP_07906431.1| DNA-binding protein HU [Lactobacillus iners ATCC 55195]
 gi|325912002|ref|ZP_08174404.1| DNA-binding protein HU [Lactobacillus iners UPII 143-D]
 gi|325912845|ref|ZP_08175223.1| DNA-binding protein HU [Lactobacillus iners UPII 60-B]
 gi|329921293|ref|ZP_08277731.1| DNA-binding protein HU [Lactobacillus iners SPIN 1401G]
 gi|259168039|gb|EEW52534.1| DNA-binding protein HU [Lactobacillus iners DSM 13335]
 gi|308163767|gb|EFO66036.1| DNA-binding protein HU [Lactobacillus iners LactinV 11V1-d]
 gi|308164969|gb|EFO67212.1| DNA-binding protein HU [Lactobacillus iners LactinV 09V1-c]
 gi|308166858|gb|EFO69043.1| DNA-binding protein HU [Lactobacillus iners LactinV 03V1-b]
 gi|308170358|gb|EFO72382.1| DNA-binding protein HU [Lactobacillus iners SPIN 2503V10-D]
 gi|311088971|gb|EFQ47412.1| DNA-binding protein HU [Lactobacillus iners LEAF 2053A-b]
 gi|311090530|gb|EFQ48938.1| DNA-binding protein HU [Lactobacillus iners LEAF 2052A-d]
 gi|311092203|gb|EFQ50577.1| DNA-binding protein HU [Lactobacillus iners LEAF 2062A-h1]
 gi|311093098|gb|EFQ51447.1| DNA-binding protein HU [Lactobacillus iners LEAF 3008A-a]
 gi|315489201|gb|EFU78842.1| DNA-binding protein HU [Lactobacillus iners ATCC 55195]
 gi|325476187|gb|EGC79351.1| DNA-binding protein HU [Lactobacillus iners UPII 143-D]
 gi|325477838|gb|EGC80972.1| DNA-binding protein HU [Lactobacillus iners UPII 60-B]
 gi|328934585|gb|EGG31089.1| DNA-binding protein HU [Lactobacillus iners SPIN 1401G]
          Length = 91

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 51/89 (57%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           ++DLV  ++    LS+K++   V  +FN + ++  + E +++  F TF V+++ +R GR
Sbjct: 3  NKADLVSLVASNTKLSKKEAADAVDLVFNFVKETLSKDEKVQLIGFGTFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E++I   +V  FK    LK+ + 
Sbjct: 63 NPQTGAEIEIPASKVPAFKPGKALKEAVK 91


>gi|146307081|ref|YP_001187546.1| nucleoid protein HU beta subunit [Pseudomonas mendocina ymp]
 gi|330503120|ref|YP_004379989.1| histone-like DNA-binding protein [Pseudomonas mendocina NK-01]
 gi|145575282|gb|ABP84814.1| bacterial nucleoid protein HU beta subunit [Pseudomonas mendocina
          ymp]
 gi|328917406|gb|AEB58237.1| histone-like DNA-binding protein [Pseudomonas mendocina NK-01]
          Length = 90

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  +   +  +   G+++ +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + + I   ++  FKA   LK  + 
Sbjct: 61 RNPQTGKPISIAAAKIPGFKAGKALKDAVN 90


>gi|104780674|ref|YP_607172.1| integration host factor subunit beta [Pseudomonas entomophila
          L48]
 gi|123380995|sp|Q1ID97|IHFB_PSEE4 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|95109661|emb|CAK14362.1| integration host factor (IHF),beta subunit, site specific
          recombination [Pseudomonas entomophila L48]
          Length = 98

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  I    GL S KD    + T+  ++      G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIDRIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T Q V ++ + V  FK    L+ R+ ++  
Sbjct: 61 GRNPKTGQSVSLEGKYVPHFKPGKELRDRVNEEEH 95


>gi|58038600|ref|YP_190564.1| integration host factor alpha-subunit [Gluconobacter oxydans 621H]
 gi|58001014|gb|AAW59908.1| Integration host factor alpha-subunit [Gluconobacter oxydans 621H]
          Length = 108

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 63/102 (61%), Gaps = 1/102 (0%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           MS T+TR++LV+ +    GLSR DS+  + +L   I D    GE++K+S F TF V+QKG
Sbjct: 1   MS-TVTRANLVEHLYSRVGLSRHDSSMILESLLGVISDRLEAGESVKLSGFGTFSVRQKG 59

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
            R+GRN +T  EV I PR V+VF+ S +L+ R+     G   
Sbjct: 60  ERIGRNPKTGVEVPILPRAVLVFRPSQLLRDRMNGSDNGAAA 101


>gi|300722785|ref|YP_003712076.1| integration host factor (IHF) subunit alpha [Xenorhabdus
          nematophila ATCC 19061]
 gi|297629293|emb|CBJ89892.1| integration host factor (IHF), alpha subunit, DNA-bending
          protein, DNA replication [Xenorhabdus nematophila ATCC
          19061]
          Length = 98

 Score =  130 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 55/95 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ +++ ++ G+S++D+   V   F E+  S   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSENLFEKLGISKRDAKDLVEIFFEEVRRSLENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +++ I  RRVV F+    LK R+   + 
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKNRVEKALP 96


>gi|163943398|ref|YP_001642628.1| histone family protein DNA-binding protein [Bacillus
          weihenstephanensis KBAB4]
 gi|163865595|gb|ABY46653.1| histone family protein DNA-binding protein [Bacillus
          weihenstephanensis KBAB4]
          Length = 90

 Score =  130 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K ++++  L++KD+      L + I ++   G+ ++   F TF V+++ +R G
Sbjct: 1  MNKTELTKVVAEKAELTQKDAAAATQALLDTITNALANGDKVQTLGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +   FKA   LK+ + 
Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELKEAVK 90


>gi|163868458|ref|YP_001609667.1| integration host factor subunit alpha [Bartonella tribocorum CIP
           105476]
 gi|189044693|sp|A9IVB2|IHFA_BART1 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|161018114|emb|CAK01672.1| integration host factor alpha subunit [Bartonella tribocorum CIP
           105476]
          Length = 107

 Score =  130 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 53/103 (51%), Positives = 72/103 (69%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           SKT+TR+DL   + K+ GLS  +S   V  + +EIC+S VRGEA+K+SSFATF V+ K  
Sbjct: 3   SKTVTRADLASVVCKKVGLSHTESAALVELVLDEICNSLVRGEAVKLSSFATFQVRSKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           R+GRN +T  E  I PRRVV FKA++ILK+RI+D  R ++   
Sbjct: 63  RIGRNPKTGVEAPIPPRRVVTFKAANILKQRILDSHRAKQKKD 105


>gi|146282421|ref|YP_001172574.1| DNA-binding protein HU [Pseudomonas stutzeri A1501]
 gi|145570626|gb|ABP79732.1| DNA-binding protein HU [Pseudomonas stutzeri A1501]
 gi|327480676|gb|AEA83986.1| DNA-binding protein HU [Pseudomonas stutzeri DSM 4166]
          Length = 90

 Score =  130 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  +   +  +   G+++ +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + + I   ++  FKA   LK  + 
Sbjct: 61 RNPQTGKPINIAAAKIPGFKAGKALKDAVN 90


>gi|240948534|ref|ZP_04752907.1| DNA-binding protein HU [Actinobacillus minor NM305]
 gi|257464750|ref|ZP_05629121.1| DNA-binding protein HU [Actinobacillus minor 202]
 gi|240297042|gb|EER47613.1| DNA-binding protein HU [Actinobacillus minor NM305]
 gi|257450410|gb|EEV24453.1| DNA-binding protein HU [Actinobacillus minor 202]
          Length = 90

 Score =  130 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+ +  LS+KD+   +      + +S   G+ +++  F TF V ++ +R G
Sbjct: 1  MNKSELIDAIAAKAELSKKDAKAALEATLEAVSESLKAGDTVQLIGFGTFKVNERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E+KI   ++  F A   LK  + 
Sbjct: 61 RNPRTGEEIKIAAAKIPAFVAGKALKDLVK 90


>gi|52842083|ref|YP_095882.1| hypothetical protein lpg1858 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629194|gb|AAU27935.1| HupB DNA binding protein HU-beta [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 100

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 51/95 (53%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            + + +S+LV +I+   GL++ D++R + T    + D   +G+ + I  F +F    + +
Sbjct: 6   GEKMNKSELVDAIASGSGLTKADASRVLETFMATVTDVLKKGDQVVIPGFGSFSTGNRSA 65

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN QT + ++I   RV  FKA   LK+ +   
Sbjct: 66  RTGRNPQTGKTIQIKASRVAKFKAGKNLKEAVQQA 100


>gi|50086053|ref|YP_047563.1| integration host factor subunit alpha [Acinetobacter sp. ADP1]
 gi|81695762|sp|Q6F874|IHFA_ACIAD RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|49532029|emb|CAG69741.1| integration host factor (IHF), alpha subunit, DNA-binding
          protein, DNA replication [Acinetobacter sp. ADP1]
          Length = 97

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 55/90 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+   +S+   L+R+++ + V   F+EI  + + GE +K+S F  F ++ K  R 
Sbjct: 3  ALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I  RRVV F+A    ++R+
Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRV 92


>gi|15965011|ref|NP_385364.1| histone-like protein [Sinorhizobium meliloti 1021]
 gi|150396098|ref|YP_001326565.1| histone family protein DNA-binding protein [Sinorhizobium medicae
          WSM419]
 gi|307301083|ref|ZP_07580852.1| histone family protein DNA-binding protein [Sinorhizobium
          meliloti BL225C]
 gi|307317817|ref|ZP_07597255.1| histone family protein DNA-binding protein [Sinorhizobium
          meliloti AK83]
 gi|544140|sp|P02344|DBH_RHIME RecName: Full=DNA-binding protein HRm
 gi|6175842|gb|AAF05301.1|AF167159_2 histone-like protein [Sinorhizobium meliloti]
 gi|15074190|emb|CAC45837.1| DNA-binding protein HU [Sinorhizobium meliloti 1021]
 gi|150027613|gb|ABR59730.1| histone family protein DNA-binding protein [Sinorhizobium medicae
          WSM419]
 gi|306896579|gb|EFN27327.1| histone family protein DNA-binding protein [Sinorhizobium
          meliloti AK83]
 gi|306904038|gb|EFN34624.1| histone family protein DNA-binding protein [Sinorhizobium
          meliloti BL225C]
          Length = 90

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++ + GLS+ D++  V  +F  I      G  I++  F  F V ++ +  G
Sbjct: 1  MNKNELVAAVADKAGLSKADASSAVDAVFETIQGELKNGGDIRLVGFGNFSVSRREASKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T  EV I  R V  F A   LK  + 
Sbjct: 61 RNPSTGAEVDIPARNVPKFTAGKGLKDAVN 90


>gi|319784144|ref|YP_004143620.1| integration host factor subunit alpha [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170032|gb|ADV13570.1| integration host factor, alpha subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 107

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 49/103 (47%), Positives = 73/103 (70%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +++ ++ GLSR +S   V  + +EIC++ VRGE +K+SSFATFHV+ K  
Sbjct: 3   GKTLTRADLAEAVYRKVGLSRTESAELVEAVLDEICEAIVRGETVKLSSFATFHVRSKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           R+GRN +T +EV I PRRV+ FK+S++LK RI+   +  K   
Sbjct: 63  RIGRNPKTGEEVPILPRRVMTFKSSNVLKSRILRSHQSGKAKS 105


>gi|48696914|ref|YP_024677.1| gp04 [Burkholderia phage BcepMu]
 gi|197295397|ref|YP_002153938.1| HU DNA-binding protein [Burkholderia cenocepacia J2315]
 gi|44829477|gb|AAS47844.1| gp04 [Burkholderia phage BcepMu]
 gi|195944876|emb|CAR57482.1| HU DNA-binding protein [Burkholderia cenocepacia J2315]
          Length = 90

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+  ++ E G+++ DS   +  +   I  S  +G+ + ++ F  F V  + +R G
Sbjct: 1  MNKSDLINHVAAETGMTKTDSGFALEAVLEGITKSLRKGDTVTLTGFGVFSVGARAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T +E+KI   +   FKA   LK  + 
Sbjct: 61 RNPATGEEIKIPASKAPKFKAGKGLKDAVK 90


>gi|110597679|ref|ZP_01385964.1| Histone-like bacterial DNA-binding protein [Chlorobium
          ferrooxidans DSM 13031]
 gi|110340799|gb|EAT59276.1| Histone-like bacterial DNA-binding protein [Chlorobium
          ferrooxidans DSM 13031]
          Length = 91

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++++LV+ I+++  L++ D+ R V    N +  S  +G+ + +  F TF    +  R G
Sbjct: 1  MSKAELVEKIAEQANLTKVDAERAVNAFINVVTGSLKQGDDVTLVGFGTFTTGDRAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   + I  ++VV FK    LK+ +
Sbjct: 61 RNPQTGAAITISAKKVVKFKPGKALKEEV 89


>gi|75675600|ref|YP_318021.1| integration host factor, alpha subunit [Nitrobacter winogradskyi
           Nb-255]
 gi|123773269|sp|Q3SSS2|IHFA_NITWN RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|74420470|gb|ABA04669.1| integration host factor, alpha subunit [Nitrobacter winogradskyi
           Nb-255]
          Length = 106

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 50/102 (49%), Positives = 71/102 (69%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR DL +++ K+ GLSR +S+ FV  +  EI D   +GE +K+SSF +F V++KG 
Sbjct: 5   GKTVTRVDLCEAVYKKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQ 64

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           R+GRN +T  EV I PRRV+VFK S+ILK+RI  +  G K +
Sbjct: 65  RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINSNGAGGKTD 106


>gi|307709231|ref|ZP_07645690.1| DNA-binding protein [Streptococcus mitis SK564]
 gi|307620177|gb|EFN99294.1| DNA-binding protein [Streptococcus mitis SK564]
          Length = 91

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 49/89 (55%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F+ + D    GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVEAVFSAVADYLAAGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+ I   +V  FKA   LK  + 
Sbjct: 63 NPQTGKEITIAASKVPAFKAGKALKDAVK 91


>gi|241204022|ref|YP_002975118.1| integration host factor subunit alpha [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857912|gb|ACS55579.1| integration host factor, alpha subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 112

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 52/102 (50%), Positives = 73/102 (71%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +S+ ++ GLSR +S   V T+ +EIC++ VRGE +K+SSFATF V+ K  
Sbjct: 3   GKTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           R+GRN +T +EV I PRRV+ FKAS++LK RI+     RK  
Sbjct: 63  RIGRNPKTGEEVPISPRRVMTFKASNVLKTRILKSHVARKIK 104


>gi|163868074|ref|YP_001609278.1| DNA-binding protein [Bartonella tribocorum CIP 105476]
 gi|240850277|ref|YP_002971670.1| DNA-binding protein [Bartonella grahamii as4aup]
 gi|161017725|emb|CAK01283.1| DNA-binding protein [Bartonella tribocorum CIP 105476]
 gi|240267400|gb|ACS50988.1| DNA-binding protein [Bartonella grahamii as4aup]
          Length = 92

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV S++++ G+S+  +   V      + ++   G  +++  F +F V  + +  G
Sbjct: 1  MNKSELVSSVAEKAGVSKAQAGAVVDAFMASVTEALASGGDVRLPGFGSFEVSHRAATKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T  E+ I  R V  F A   LK+ +  
Sbjct: 61 RNPSTGAEIDIPARSVPKFSAGKSLKEAVNK 91


>gi|239906700|ref|YP_002953441.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
          RS-1]
 gi|239796566|dbj|BAH75555.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
          RS-1]
          Length = 90

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  I+++ GL++ ++ R +      I ++ V    I ++ F TF V ++ +R G
Sbjct: 1  MTKADLVGKIAEKTGLTKANAERALNAFIEAIEETLVGEGKITLTGFGTFMVDERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  E+ I   +VV F+   +LK  I 
Sbjct: 61 RNPRTGAEINIPASKVVKFRPGKLLKDAIQ 90


>gi|226944450|ref|YP_002799523.1| histone-like DNA-binding protein [Azotobacter vinelandii DJ]
 gi|226719377|gb|ACO78548.1| histone-like bacterial DNA-binding protein [Azotobacter
          vinelandii DJ]
          Length = 90

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  +   +  +   G+++ +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + + I+  ++  FKA   LK  + 
Sbjct: 61 RNPQTGKPINIEAAKIPGFKAGKALKDAVN 90


>gi|92117139|ref|YP_576868.1| integration host factor subunit alpha [Nitrobacter hamburgensis
           X14]
 gi|123265314|sp|Q1QMY9|IHFA_NITHX RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|91800033|gb|ABE62408.1| integration host factor, alpha subunit [Nitrobacter hamburgensis
           X14]
          Length = 110

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 49/102 (48%), Positives = 70/102 (68%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR DL +++ K+ GLSR +S+ FV  +  EI D   +GE +K+SSF +F V++KG 
Sbjct: 5   GKTVTRVDLCEAVYKKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQ 64

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           R+GRN +T  EV I PRRV+VFK S+ILK+RI  +  G   +
Sbjct: 65  RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINGNSNGNGAD 106


>gi|15597001|ref|NP_250495.1| DNA-binding protein HU [Pseudomonas aeruginosa PAO1]
 gi|116049754|ref|YP_791439.1| DNA-binding protein HU [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152988765|ref|YP_001348851.1| DNA-binding protein HU [Pseudomonas aeruginosa PA7]
 gi|218892242|ref|YP_002441109.1| DNA-binding protein HU [Pseudomonas aeruginosa LESB58]
 gi|254234898|ref|ZP_04928221.1| DNA-binding protein HU [Pseudomonas aeruginosa C3719]
 gi|254240197|ref|ZP_04933519.1| DNA-binding protein HU [Pseudomonas aeruginosa 2192]
 gi|296389805|ref|ZP_06879280.1| DNA-binding protein HU [Pseudomonas aeruginosa PAb1]
 gi|313110501|ref|ZP_07796386.1| DNA-binding protein HU [Pseudomonas aeruginosa 39016]
 gi|12643997|sp|P05384|DBHB_PSEAE RecName: Full=DNA-binding protein HU-beta
 gi|9947787|gb|AAG05193.1|AE004606_7 DNA-binding protein HU [Pseudomonas aeruginosa PAO1]
 gi|115584975|gb|ABJ10990.1| DNA-binding protein HU [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126166829|gb|EAZ52340.1| DNA-binding protein HU [Pseudomonas aeruginosa C3719]
 gi|126193575|gb|EAZ57638.1| DNA-binding protein HU [Pseudomonas aeruginosa 2192]
 gi|150963923|gb|ABR85948.1| DNA-binding protein HU [Pseudomonas aeruginosa PA7]
 gi|218772468|emb|CAW28250.1| DNA-binding protein HU [Pseudomonas aeruginosa LESB58]
 gi|310882888|gb|EFQ41482.1| DNA-binding protein HU [Pseudomonas aeruginosa 39016]
          Length = 90

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  +   +  +   G+++ +  F TF VK++ +R G
Sbjct: 1  MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI   ++  FKA   LK  + 
Sbjct: 61 RNPQTGKPIKIAAAKIPGFKAGKALKDAVN 90


>gi|294677449|ref|YP_003578064.1| integration host factor subunit alpha [Rhodobacter capsulatus SB
          1003]
 gi|294476269|gb|ADE85657.1| integration host factor, alpha subunit [Rhodobacter capsulatus SB
          1003]
          Length = 100

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 47/97 (48%), Positives = 68/97 (70%), Gaps = 1/97 (1%)

Query: 1  MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          MS KT+TR DL +++ +E GLSR +S + V T+   + D+ VRGE +KISSF TF V+ K
Sbjct: 1  MSEKTLTRMDLSEAVFREVGLSRNESAQLVETVLQHMSDALVRGETVKISSFGTFSVRDK 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           SR+GRN +T +EV I PRRV+ F+ S ++K R+ + 
Sbjct: 61 TSRMGRNPKTGEEVPISPRRVLSFRPSHLMKDRVAEG 97


>gi|242241106|ref|YP_002989287.1| transcriptional regulator HU subunit alpha [Dickeya dadantii
          Ech703]
 gi|242133163|gb|ACS87465.1| histone family protein DNA-binding protein [Dickeya dadantii
          Ech703]
          Length = 90

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   +      I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKTQAKAALEATLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F A   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVAGKALKDAVK 90


>gi|225023874|ref|ZP_03713066.1| hypothetical protein EIKCOROL_00740 [Eikenella corrodens ATCC
           23834]
 gi|224943348|gb|EEG24557.1| hypothetical protein EIKCOROL_00740 [Eikenella corrodens ATCC
           23834]
          Length = 146

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 49/89 (55%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +S+L+++I+KE  +S+  + + +      +  +  +G+ + +  F TF+V ++  R G
Sbjct: 58  VNKSELIEAIAKEADISKAAAGKALDGFTKAVTTALKKGDTVTLVGFGTFYVGERAERKG 117

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN QT +E+ I   +   F+A   LK  +
Sbjct: 118 RNPQTGKELIIPAAKSPKFRAGKALKDAL 146


>gi|266619816|ref|ZP_06112751.1| DNA-binding protein HU [Clostridium hathewayi DSM 13479]
 gi|288868604|gb|EFD00903.1| DNA-binding protein HU [Clostridium hathewayi DSM 13479]
          Length = 91

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  LS+KD+ + V    + + +  V G  I++  F TF V ++ +R G
Sbjct: 1  MNKTELIAAVAEKAELSKKDAEKAVKAFTDVVSEELVNGGKIQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN ++ + + I   +   FKA   LK  + 
Sbjct: 61 RNPKSGEVMNIPASKTPKFKAGKALKDMVN 90


>gi|14194654|sp|Q9LA96|DBHA_AERHY RecName: Full=DNA-binding protein HU-alpha
          Length = 90

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV +I+ +  LS+  +   +  + N I  S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVNHRAGRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I    V  F A   LK  + 
Sbjct: 61 RNPQTGKEIQIAAANVPSFVAGKALKDAVK 90


>gi|103486291|ref|YP_615852.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256]
 gi|98976368|gb|ABF52519.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256]
          Length = 90

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+ +++   GL++ D+++ V  +F+ I  +  +G  +++  F TF V ++ +  G
Sbjct: 1  MNKQDLIAAVADSSGLTKGDASKAVEAVFDAITGALKKGGEVRLVGFGTFAVSKRKASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I       FKA   LK  + 
Sbjct: 61 RNPRTGETMTIAASNQPKFKAGKALKDAVN 90


>gi|91787670|ref|YP_548622.1| integration host factor subunit beta [Polaromonas sp. JS666]
 gi|91696895|gb|ABE43724.1| integration host factor, beta subunit [Polaromonas sp. JS666]
          Length = 104

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDLV+ ++     L+ +D+   V T+ + + D+ VRG  I+I  F +F + ++  R+
Sbjct: 1  MTRSDLVEELAARFSQLTHRDAEYAVKTILDAMSDALVRGHRIEIRGFGSFSINRRPPRM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V I  +RV  FK    L++ +
Sbjct: 61 GRNPRSGESVAIPEKRVPHFKPGKALREAV 90


>gi|300703991|ref|YP_003745593.1| DNA-binding protein hu-beta, transcriptional regulator subunit
          beta [Ralstonia solanacearum CFBP2957]
 gi|299071654|emb|CBJ42978.1| DNA-binding protein HU-beta, transcriptional regulator, beta
          subunit [Ralstonia solanacearum CFBP2957]
          Length = 90

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ + GL + D+ R +  + + I  +   G  + ++ F +F V  + +R+G
Sbjct: 1  MNKAVLIAHIADQAGLKKTDANRALDAVLDGIRSTLADGGTVSLTGFGSFSVGARPARIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +EV+I    VV FKA S LK  + 
Sbjct: 61 RNPRTGEEVEIAASHVVKFKAGSDLKAAVN 90


>gi|294012154|ref|YP_003545614.1| DNA-binding protein HU-beta [Sphingobium japonicum UT26S]
 gi|292675484|dbj|BAI97002.1| DNA-binding protein HU-beta [Sphingobium japonicum UT26S]
          Length = 90

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+ ++++  GLS+ D+++ V  +F+ I  +  +G+ +++  F TF V Q+ +  G
Sbjct: 1  MNKQDLISAVAESSGLSKSDASKAVEGVFDAITGALKKGDEVRLVGFGTFSVSQRKASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I       FKA   LK  + 
Sbjct: 61 RNPRTGETMTIKASAQPKFKAGKGLKDSVN 90


>gi|114771803|ref|ZP_01449196.1| integration host factor, alpha subunit [alpha proteobacterium
          HTCC2255]
 gi|114547619|gb|EAU50510.1| integration host factor, alpha subunit [alpha proteobacterium
          HTCC2255]
          Length = 99

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 41/92 (44%), Positives = 66/92 (71%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          ++T+TR DL +++ +E GLSR +S   V ++   I D+ VRGE +KISSF TF+++ K +
Sbjct: 3  NETLTRMDLAEAVFEEVGLSRNESADLVESVLQHISDALVRGENVKISSFGTFNIRDKNA 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R+GRN +T +EV I+PRRV+ F+ S  +K ++
Sbjct: 63 RIGRNPKTGEEVPINPRRVLSFRPSHTMKDKV 94


>gi|24373647|ref|NP_717690.1| integration host factor, alpha subunit [Shewanella oneidensis MR-1]
 gi|81744784|sp|Q8EF98|IHFA_SHEON RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|24347991|gb|AAN55134.1|AE015650_4 integration host factor, alpha subunit [Shewanella oneidensis MR-1]
          Length = 98

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 54/97 (55%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ + + +  G++++ +   V + F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAEMAEHLFETLGINKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T +++ I  RRVV F+    LK R+     G+
Sbjct: 62  GRNPKTGEDIPISARRVVTFRPGQKLKTRVEAANTGK 98


>gi|310829349|ref|YP_003961706.1| histone family protein DNA-binding protein [Eubacterium limosum
          KIST612]
 gi|308741083|gb|ADO38743.1| histone family protein DNA-binding protein [Eubacterium limosum
          KIST612]
          Length = 91

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++++ GLS+KDS + +    + + D+   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSELIAAMAEKSGLSKKDSEKALGAFMDTVVDALKDGDKVALVGFGTFDVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T + ++I   +   FKA    K  +  
Sbjct: 61 LNPRTKEPIEIAASKAPAFKAGKAFKDELNK 91


>gi|296284719|ref|ZP_06862717.1| histone-like protein [Citromicrobium bathyomarinum JL354]
          Length = 90

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++  GLS+ D++  V  +F+ I  +   G+ +++  F TF V ++ +  G
Sbjct: 1  MNKNELIGTVAESCGLSKSDASNAVEGVFDAIQKALANGDEVRLVGFGTFSVAKRKASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + ++I       FKA   LK  + 
Sbjct: 61 RNPRTGEPMEIKASNQPKFKAGKGLKDAVN 90


>gi|291551159|emb|CBL27421.1| Bacterial nucleoid DNA-binding protein [Ruminococcus torques
          L2-14]
          Length = 90

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ + +++++  +S+KDS + +    + + +    G+ +++  F TF V ++ +R G
Sbjct: 1  MNKTEFIAAVAEKAEISKKDSEKALKAFVDVVTEQLKAGDKVQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + + I   +   FKA   LK  I 
Sbjct: 61 RNPQTGKTMTIAACKAPKFKAGKALKDAIN 90


>gi|319787633|ref|YP_004147108.1| histone family protein DNA-binding protein [Pseudoxanthomonas
          suwonensis 11-1]
 gi|317466145|gb|ADV27877.1| histone family protein DNA-binding protein [Pseudoxanthomonas
          suwonensis 11-1]
          Length = 90

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++ E  +++ +++R V  + N +  +  +G+A+ +  F TF V+++ +R G
Sbjct: 1  MNKTDLIDAVASEAEITKAEASRAVDAVVNSVTKALKKGDAVTLVGFGTFQVRKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + +KI   +   FKA   LK  + 
Sbjct: 61 RNPKTGETIKIKASKNPAFKAGKALKDAVN 90


>gi|187934552|ref|YP_001884411.1| DNA-binding protein HU [Clostridium botulinum B str. Eklund 17B]
 gi|188590511|ref|YP_001919603.1| DNA-binding protein HU [Clostridium botulinum E3 str. Alaska E43]
 gi|251781035|ref|ZP_04823955.1| DNA-binding protein HU [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
 gi|187722705|gb|ACD23926.1| DNA-binding protein HU [Clostridium botulinum B str. Eklund 17B]
 gi|188500792|gb|ACD53928.1| DNA-binding protein HU [Clostridium botulinum E3 str. Alaska E43]
 gi|243085350|gb|EES51240.1| DNA-binding protein HU [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
          Length = 92

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  L++KD+   + +    + ++   GE +++  F TF  +++ +R G
Sbjct: 1  MNKAELITSMAEKSKLTKKDAELALKSFIESVEEALESGEKVQLVGFGTFETRERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + + I    V VFK     K ++ +
Sbjct: 61 RNPRTKEVINIPATTVPVFKPGKEFKDKVNN 91


>gi|126215724|sp|Q6MMJ0|IHFA_BDEBA RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
          Length = 110

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 59/96 (61%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D+V+++ ++ G S+K+++  V  +F+ +      GE +KIS F  F V+ K  R+G
Sbjct: 1   MTKADIVENVYQKIGFSKKEASELVELVFDTLKTVLQDGEKVKISGFGNFVVRGKNERIG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RN QT +++KI  RRV+ F+ S +LK  +  +    
Sbjct: 61  RNPQTGEQIKISARRVLTFRPSQVLKAMLNGEEYAH 96


>gi|315499364|ref|YP_004088168.1| integration host factor, beta subunit [Asticcacaulis excentricus
          CB 48]
 gi|315417376|gb|ADU14017.1| integration host factor, beta subunit [Asticcacaulis excentricus
          CB 48]
          Length = 98

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ ++ E   +++KD  R V  +   + ++  +G  +++  F  F V+ + +RV
Sbjct: 1  MLKSELIERLASEYPHMTQKDVERIVNLILESMIETLEKGGRVELRGFGAFSVRSRPARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T + V +  + V  FK+   L++R+ 
Sbjct: 61 GRNPRTGEAVSVPAKHVPFFKSGKELRERLN 91


>gi|168335347|ref|ZP_02693443.1| Bacterial nucleoid DNA-binding protein [Epulopiscium sp. 'N.t.
          morphotype B']
          Length = 93

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV S++++ GL++KD+ + +      + D    G  I++  F TF V  + +RVG
Sbjct: 1  MNKTELVASMAEKSGLTKKDTEKALKAFEESVMDELKSGGKIQLVGFGTFEVTNRKARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +TN+E+ I    V  FKA   LK  + 
Sbjct: 61 RNPKTNEEIHIPESNVPKFKAGKALKDMVN 90


>gi|312865869|ref|ZP_07726090.1| DNA-binding protein HU-alpha [Streptococcus downei F0415]
 gi|311098273|gb|EFQ56496.1| DNA-binding protein HU-alpha [Streptococcus downei F0415]
          Length = 91

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 49/89 (55%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F+ I     +GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFSSIEGFLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E+KI   +V  FKA   LK  + 
Sbjct: 63 NPQTGAEIKIAASKVPAFKAGKALKDAVK 91


>gi|114706456|ref|ZP_01439358.1| integration host factor beta subunit [Fulvimarina pelagi
          HTCC2506]
 gi|114538317|gb|EAU41439.1| integration host factor beta subunit [Fulvimarina pelagi
          HTCC2506]
          Length = 93

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I+ +   L ++D    V  +F+EI ++      +++  F  F VK +  R 
Sbjct: 1  MIKSELVQVIANRNPHLYQRDVEMIVNAIFDEITEALCESNRVELRGFGAFSVKNRPPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V++  + V  FK    L++R+ + 
Sbjct: 61 GRNPRTGEAVEVSEKWVPFFKPGKELRERLNEA 93


>gi|251782882|ref|YP_002997185.1| DNA-binding protein HU [Streptococcus dysgalactiae subsp.
          equisimilis GGS_124]
 gi|242391512|dbj|BAH81971.1| DNA-binding protein HU [Streptococcus dysgalactiae subsp.
          equisimilis GGS_124]
 gi|322412211|gb|EFY03119.1| DNA-binding protein HU [Streptococcus dysgalactiae subsp.
          dysgalactiae ATCC 27957]
 gi|323127685|gb|ADX24982.1| DNA-binding protein HU [Streptococcus dysgalactiae subsp.
          equisimilis ATCC 12394]
          Length = 91

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 48/89 (53%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F+ I      GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFSAIEAFLAEGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E++I   +V  FKA   LK  + 
Sbjct: 63 NPQTGAEIEIAASKVPAFKAGKALKDAVK 91


>gi|229170573|ref|ZP_04298221.1| DNA-binding protein HU [Bacillus cereus AH621]
 gi|228612922|gb|EEK70099.1| DNA-binding protein HU [Bacillus cereus AH621]
          Length = 93

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 53/92 (57%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +++L K ++++  L++KD+      + + I ++    E ++I  F TF V+++ +R
Sbjct: 2  QKMNKTELTKMVAEKAELTQKDAAVATQAVLDAITNALANEEKVQILGFGTFEVRERSAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E++I   +V  FKA   LK  + 
Sbjct: 62 TGRNPQTGEEMQIAASKVPAFKAGKELKAAVK 93


>gi|144901346|emb|CAM78210.1| DNA-binding protein HU [Magnetospirillum gryphiswaldense MSR-1]
          Length = 92

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 49/91 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  +++  GL++ DS + V  +F  I  +   G+ +++  F +F V  + +  G
Sbjct: 1  MNKADLVSRVAELSGLTKADSEKAVDGVFEAITAALKGGDEVRLVGFGSFSVASRAASEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T ++++I   +   F A   LK+ +  
Sbjct: 61 RNPRTGEKIQIPASKQPKFSAGKGLKEAVNG 91


>gi|85716272|ref|ZP_01047246.1| integration host factor, alpha subunit [Nitrobacter sp. Nb-311A]
 gi|85696944|gb|EAQ34828.1| integration host factor, alpha subunit [Nitrobacter sp. Nb-311A]
          Length = 106

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 50/102 (49%), Positives = 71/102 (69%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR DL +++ K+ GLSR +S+ FV  +  EI D   +GE +K+SSF +F V++KG 
Sbjct: 5   GKTVTRVDLCEAVYKKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQ 64

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           R+GRN +T  EV I PRRV+VFK S+ILK+RI  +  G K +
Sbjct: 65  RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINSNGAGAKTD 106


>gi|157369341|ref|YP_001477330.1| histone family protein DNA-binding protein [Serratia proteamaculans
           568]
 gi|157321105|gb|ABV40202.1| histone family protein DNA-binding protein [Serratia proteamaculans
           568]
          Length = 101

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +S L+  I+    +S+  + R +  +   + DS   G+ + +  F +F V+++ +R G
Sbjct: 12  VNKSQLIDKIAAGADISKAAAGRALDAVIASVTDSLKEGDDVALVGFGSFTVRERSARTG 71

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN QT +E+KI   +V  F+A   LK  + 
Sbjct: 72  RNPQTGKEIKIAAAKVPAFRAGKALKDAVN 101


>gi|329117127|ref|ZP_08245844.1| DNA-binding protein HU-beta [Streptococcus parauberis NCFD 2020]
 gi|326907532|gb|EGE54446.1| DNA-binding protein HU-beta [Streptococcus parauberis NCFD 2020]
          Length = 91

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 48/89 (53%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F+ I      GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFSAIEAFLSEGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E++I   +V  FKA   LK  + 
Sbjct: 63 NPQTGAEIEIAASKVPAFKAGKALKDAVK 91


>gi|317051936|ref|YP_004113052.1| histone family protein DNA-binding protein [Desulfurispirillum
          indicum S5]
 gi|316947020|gb|ADU66496.1| histone family protein DNA-binding protein [Desulfurispirillum
          indicum S5]
          Length = 93

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T++DLV+ I ++   +++K +   V  LF  I D+   G+ +++  F +F  +++G R 
Sbjct: 1  MTKADLVERICEKTDSVNKKQAEAVVNGLFECIIDALEEGDKVELRGFGSFKTRERGPRE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T  +V +  +RV  FK    L++R+ + 
Sbjct: 61 GRNPKTGDKVSVPSKRVPYFKPGKELRERVDNA 93


>gi|15964139|ref|NP_384492.1| integration host factor subunit beta [Sinorhizobium meliloti 1021]
 gi|307301284|ref|ZP_07581046.1| integration host factor, beta subunit [Sinorhizobium meliloti
           BL225C]
 gi|307317955|ref|ZP_07597392.1| integration host factor, beta subunit [Sinorhizobium meliloti AK83]
 gi|21362611|sp|Q92SJ7|IHFB_RHIME RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|15073315|emb|CAC41823.1| Probable integration host factor beta-subunit [Sinorhizobium
           meliloti 1021]
 gi|306896357|gb|EFN27106.1| integration host factor, beta subunit [Sinorhizobium meliloti AK83]
 gi|306903740|gb|EFN34327.1| integration host factor, beta subunit [Sinorhizobium meliloti
           BL225C]
          Length = 103

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV+ ++     L  +D    V  + +EI D+   G  +++  F  F VK + SR 
Sbjct: 1   MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN +T   V ++ + V  FK    L++R+   M      +DD
Sbjct: 61  GRNPRTGDSVFVEEKWVPFFKTGKELRERLNPGMNDNNNGEDD 103


>gi|316931463|ref|YP_004106445.1| integration host factor subunit beta [Rhodopseudomonas palustris
          DX-1]
 gi|315599177|gb|ADU41712.1| integration host factor, beta subunit [Rhodopseudomonas palustris
          DX-1]
          Length = 104

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  + +EI D+  RG+ +++  F  F VK + +R 
Sbjct: 1  MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T   V ++ + V  FK    +++R+  D
Sbjct: 61 GRNPRTGAHVPVEQKTVPFFKTGKEMRERLNRD 93


>gi|260774395|ref|ZP_05883309.1| DNA-binding protein HU-alpha [Vibrio metschnikovii CIP 69.14]
 gi|260610522|gb|EEX35727.1| DNA-binding protein HU-alpha [Vibrio metschnikovii CIP 69.14]
          Length = 90

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +      +  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKVQAKAALEATLGAVEGALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E++I    V  F A   LK  + 
Sbjct: 61 RNPKTGEEIQISAANVPAFVAGKALKDSLK 90


>gi|320539031|ref|ZP_08038706.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Serratia symbiotica str. Tucson]
 gi|320030964|gb|EFW12968.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Serratia symbiotica str. Tucson]
          Length = 98

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 55/93 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKDLVELFFEEVRRALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +++ I  RRVV F++   LK R+ + 
Sbjct: 62 GRNPKTGEDIPITARRVVTFRSGQKLKSRVENA 94


>gi|291523826|emb|CBK89413.1| Bacterial nucleoid DNA-binding protein [Eubacterium rectale DSM
          17629]
 gi|291528706|emb|CBK94292.1| Bacterial nucleoid DNA-binding protein [Eubacterium rectale
          M104/1]
          Length = 90

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV +++++ G+S+KD+   +    + + +   +GE I++  F TF V ++ +R G
Sbjct: 1  MNKADLVAAMAEKAGVSKKDAEASLKAFTDVVAEELKKGEKIQLVGFGTFEVSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E+ I   +   FKA   LK  + 
Sbjct: 61 RNPQTGAEMTIAASKAPKFKAGKALKDSLN 90


>gi|256060895|ref|ZP_05451053.1| integration host factor subunit alpha [Brucella neotomae 5K33]
 gi|261324891|ref|ZP_05964088.1| integration host factor subunit alpha [Brucella neotomae 5K33]
 gi|261300871|gb|EEY04368.1| integration host factor subunit alpha [Brucella neotomae 5K33]
          Length = 107

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/102 (46%), Positives = 74/102 (72%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +++ ++ GLSR +S   +  + +E+CD+ V GE +K+SSFATF V+ K  
Sbjct: 3   GKTVTRADLAEAVYRKVGLSRTESAALIEMILDEVCDAIVNGETVKLSSFATFQVRDKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           R+GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+  
Sbjct: 63  RIGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQGK 104


>gi|193213379|ref|YP_001999332.1| histone family protein DNA-binding protein [Chlorobaculum parvum
           NCIB 8327]
 gi|193086856|gb|ACF12132.1| histone family protein DNA-binding protein [Chlorobaculum parvum
           NCIB 8327]
          Length = 100

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 56/100 (56%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           M +T T++DLV  I++  GL++ ++   V  LF  I DS   G+ I+I  F +F+++ K 
Sbjct: 1   MGQTTTKADLVNVIAQRTGLTKHETESVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKN 60

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
            R  RN +T ++V + P+ V  FK S   K  + + ++  
Sbjct: 61  LRQARNPRTGEKVTVGPKNVPTFKISKEFKHAVSESLKAE 100


>gi|260770646|ref|ZP_05879577.1| DNA-binding protein HU-alpha [Vibrio furnissii CIP 102972]
 gi|260614372|gb|EEX39560.1| DNA-binding protein HU-alpha [Vibrio furnissii CIP 102972]
 gi|315178408|gb|ADT85322.1| DNA-binding protein HU [Vibrio furnissii NCTC 11218]
          Length = 90

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   +      +  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLSKAQAKAALEATLGAVEGALKEGDQVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E+KI    V  F A   LK  + 
Sbjct: 61 RNPKTGEEIKIAAANVPAFVAGKALKDSVK 90


>gi|62464771|ref|YP_220382.1| hypothetical protein p49879_1p05 [Leptospirillum ferrooxidans]
 gi|60739072|gb|AAX36038.1| ORF98 [Leptospirillum ferrooxidans]
          Length = 98

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV+S+S    LS+KD    +      I DS  +GE + +  F TF   +K +R G
Sbjct: 1  MNKTELVESVSDSSHLSKKDVQAVLDGFLATIGDSLKKGEKVALVGFGTFETVKKEARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + ++I  R V  F A   L++ I
Sbjct: 61 RNPRTGEALEIPARTVPKFSAGKSLREAI 89


>gi|238026976|ref|YP_002911207.1| putative dna-binding protein hu-beta [Burkholderia glumae BGR1]
 gi|237876170|gb|ACR28503.1| Probable dna-binding protein hu-beta [Burkholderia glumae BGR1]
          Length = 90

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  I++E  LS+  + R +  L   +  +   G ++ ++ F TF V ++ +R G
Sbjct: 1  MNKTDLIDHIAREADLSKASAGRALDALIGGVMQALESGGSVTLAGFGTFEVGERIARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++I+  RV  F+A   LK  + 
Sbjct: 61 RNPQTGETIRIEAARVAKFRAGKALKDALN 90


>gi|304440463|ref|ZP_07400352.1| DNA-binding protein HU [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371215|gb|EFM24832.1| DNA-binding protein HU [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 92

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+++  L++KD+   +      + D+   GE +++  F TF V+++ +R G
Sbjct: 1  MNKAELIANIAEKSNLTKKDAEMALNGFLTTVQDALASGEKVQLVGFGTFEVRERKAREG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95
          RN +  +E +KI   +  VF++   LK+ +  
Sbjct: 61 RNPRNPEEVIKIPASKAPVFRSGKALKEAVNK 92


>gi|291548185|emb|CBL21293.1| Bacterial nucleoid DNA-binding protein [Ruminococcus sp. SR1/5]
          Length = 92

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++K+  LS+KD    + +  + + D   +GE I++  F TF V  + +R G
Sbjct: 1  MNKTELVAAMAKDTNLSKKDVEAVLKSFIDVVTDELKKGEKIQLVGFGTFEVSTRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + + I+  +   FKA   LK  +  
Sbjct: 61 RNPQTGETMTIEASKSPKFKAGKALKDVVNG 91


>gi|160878293|ref|YP_001557261.1| histone family protein DNA-binding protein [Clostridium
          phytofermentans ISDg]
 gi|160426959|gb|ABX40522.1| histone family protein DNA-binding protein [Clostridium
          phytofermentans ISDg]
          Length = 91

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+++  LS+KDS + +    + + +   +GE +++  F TF V  + +R G
Sbjct: 1  MNKAELVAAIAEKTELSKKDSEKALKAFIDVVTEELTKGEKVQLVGFGTFEVSARPARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT Q + I   +   FKA   LK  I  
Sbjct: 61 RNPQTKQTITIAASKAPKFKAGKALKDVINK 91


>gi|291530746|emb|CBK96331.1| bacterial nucleoid protein Hbs [Eubacterium siraeum 70/3]
 gi|291557742|emb|CBL34859.1| bacterial nucleoid protein Hbs [Eubacterium siraeum V10Sc8a]
          Length = 91

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 56/91 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  ++++  L++KD+ + ++ L   I ++  +GE I++  F TF V+++ +R G
Sbjct: 1  MTKAELVTMVAEKADLTKKDAEKAISALVESISETLAKGEKIQLVGFGTFEVRERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T  ++KI   +V  FKA S LK  +  
Sbjct: 61 VNPRTGDKIKIAASKVPAFKAGSALKDAVAK 91


>gi|152979637|ref|YP_001345266.1| histone family protein DNA-binding protein [Actinobacillus
          succinogenes 130Z]
 gi|150841360|gb|ABR75331.1| histone family protein DNA-binding protein [Actinobacillus
          succinogenes 130Z]
          Length = 91

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+    L++KD+   +    + I  S  +G+A+++  F TF V ++ +R+G
Sbjct: 1  MNKTDLIDAIASAASLTKKDAKAALEATLDAITASLKKGDAVQLIGFGTFKVNERKARIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT  E+KI   +   F A   LK  +  
Sbjct: 61 RNPQTGAEIKIAASKAPAFVAGKALKDEVNG 91


>gi|149920506|ref|ZP_01908974.1| DNA-binding protein HU [Plesiocystis pacifica SIR-1]
 gi|149818687|gb|EDM78132.1| DNA-binding protein HU [Plesiocystis pacifica SIR-1]
          Length = 128

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 54/91 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L++ +++E GL++  +   V T+F  +  + V G+ I+I  F +F V+Q  +  G
Sbjct: 1  MTKSELIERVAQESGLTKGRAEMVVNTIFESMTHALVAGDGIEIRGFGSFTVRQYKAYEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T   V + P+R+  FK    L++R+  
Sbjct: 61 RNPRTGDVVHVAPKRLPFFKVGKELRERVNG 91


>gi|157375731|ref|YP_001474331.1| integration host factor, alpha subunit [Shewanella sediminis
           HAW-EB3]
 gi|157962289|ref|YP_001502323.1| integration host factor subunit alpha [Shewanella pealeana ATCC
           700345]
 gi|167623744|ref|YP_001674038.1| integration host factor subunit alpha [Shewanella halifaxensis
           HAW-EB4]
 gi|212635793|ref|YP_002312318.1| integration host factor subunit alpha [Shewanella piezotolerans
           WP3]
 gi|189045030|sp|B0TQY4|IHFA_SHEHH RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|189045031|sp|A8H5F1|IHFA_SHEPA RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|189045032|sp|A8FWI0|IHFA_SHESH RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|226709753|sp|B8CR59|IHFA_SHEPW RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|157318105|gb|ABV37203.1| integration host factor, alpha subunit [Shewanella sediminis
           HAW-EB3]
 gi|157847289|gb|ABV87788.1| integration host factor, alpha subunit [Shewanella pealeana ATCC
           700345]
 gi|167353766|gb|ABZ76379.1| integration host factor, alpha subunit [Shewanella halifaxensis
           HAW-EB4]
 gi|212557277|gb|ACJ29731.1| Integration host factor, alpha subunit [Shewanella piezotolerans
           WP3]
          Length = 98

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 54/97 (55%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ + + +  G++++ +   V T F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRQALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T +++ I  RRVV F+    LK R+ +    +
Sbjct: 62  GRNPKTGEDIPISARRVVTFRPGQKLKSRVEEANAKK 98


>gi|88799977|ref|ZP_01115548.1| integration host factor alpha subunit [Reinekea sp. MED297]
 gi|88777255|gb|EAR08459.1| integration host factor alpha subunit [Reinekea sp. MED297]
          Length = 100

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 51/87 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++   + +E GL+++++   V   F EI +S V  E +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMADRLYEELGLNKREAKEMVEIFFEEIRESLVHNEQVKLSGFGNFDLRDKRQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T +E+ I  RRVV F+    LK
Sbjct: 62 GRNPKTGEEIPISARRVVTFRPGQKLK 88


>gi|120598987|ref|YP_963561.1| integration host factor subunit alpha [Shewanella sp. W3-18-1]
 gi|126174101|ref|YP_001050250.1| integration host factor subunit alpha [Shewanella baltica OS155]
 gi|146292928|ref|YP_001183352.1| integration host factor subunit alpha [Shewanella putrefaciens
           CN-32]
 gi|153000427|ref|YP_001366108.1| integration host factor subunit alpha [Shewanella baltica OS185]
 gi|160875024|ref|YP_001554340.1| integration host factor subunit alpha [Shewanella baltica OS195]
 gi|217973584|ref|YP_002358335.1| integration host factor subunit alpha [Shewanella baltica OS223]
 gi|304411359|ref|ZP_07392973.1| integration host factor, alpha subunit [Shewanella baltica OS183]
 gi|307305319|ref|ZP_07585067.1| integration host factor, alpha subunit [Shewanella baltica BA175]
 gi|166918524|sp|A3D3R8|IHFA_SHEB5 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|166918525|sp|A6WMK6|IHFA_SHEB8 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|166918527|sp|A4Y6H0|IHFA_SHEPC RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|166918529|sp|A1RK12|IHFA_SHESW RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|189045029|sp|A9KYZ2|IHFA_SHEB9 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|254803521|sp|B8E7F3|IHFA_SHEB2 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|120559080|gb|ABM25007.1| integration host factor, alpha subunit [Shewanella sp. W3-18-1]
 gi|125997306|gb|ABN61381.1| integration host factor, alpha subunit [Shewanella baltica OS155]
 gi|145564618|gb|ABP75553.1| integration host factor, alpha subunit [Shewanella putrefaciens
           CN-32]
 gi|151365045|gb|ABS08045.1| integration host factor, alpha subunit [Shewanella baltica OS185]
 gi|160860546|gb|ABX49080.1| integration host factor, alpha subunit [Shewanella baltica OS195]
 gi|217498719|gb|ACK46912.1| integration host factor, alpha subunit [Shewanella baltica OS223]
 gi|304350214|gb|EFM14618.1| integration host factor, alpha subunit [Shewanella baltica OS183]
 gi|306911622|gb|EFN42047.1| integration host factor, alpha subunit [Shewanella baltica BA175]
 gi|315267256|gb|ADT94109.1| integration host factor, alpha subunit [Shewanella baltica OS678]
 gi|319426543|gb|ADV54617.1| integration host factor, alpha subunit [Shewanella putrefaciens
           200]
          Length = 98

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 54/97 (55%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ + + +  G++++ +   V + F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAEMAEHLFETLGMNKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T +++ I  RRVV F+    LK R+     G+
Sbjct: 62  GRNPKTGEDIPISARRVVTFRPGQKLKTRVEAANTGK 98


>gi|291521609|emb|CBK79902.1| Bacterial nucleoid DNA-binding protein [Coprococcus catus GD/7]
          Length = 91

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ G+ + D+ + +    + + D  V+GE I++  F TF V ++  R G
Sbjct: 1  MNKAELVAAMAEKTGMKKNDAEKALKAFVDVVTDELVKGEKIQLVGFGTFEVSERPEREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + +KI   +   FKA   LK  I 
Sbjct: 61 RNPRTGETMKIAASKAPKFKAGKALKDMIN 90


>gi|78046640|ref|YP_362815.1| histone-like protein [Xanthomonas campestris pv. vesicatoria str.
          85-10]
 gi|78035070|emb|CAJ22715.1| histone-like protein [Xanthomonas campestris pv. vesicatoria str.
          85-10]
          Length = 90

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++    +S+ +++R V  + +EI  +  +G+A+ +  F TF V+++  R G
Sbjct: 1  MNKTELIDGVAAAADISKAEASRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   +   FKA   LK  + 
Sbjct: 61 RNPKTGDSIKIAASKNPAFKAGKALKDAVN 90


>gi|222056441|ref|YP_002538803.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32]
 gi|221565730|gb|ACM21702.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32]
          Length = 92

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 58/91 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I ++ G S+K+S   V T+F+ I  +   G+ IKI+ F  F VK+K  R G
Sbjct: 1  MTKADIVERIYEKVGFSKKESAELVETVFDLIKSTLEEGDKIKIAGFGNFVVKEKADRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E+ I  R+++ FK S +LK  I +
Sbjct: 61 RNPQTGEEITISARKILTFKPSQVLKAAINN 91


>gi|9630187|ref|NP_046614.1| histone-like prokaryotic DNA-binding protein family [Bacillus
          phage SPBc2]
 gi|16079164|ref|NP_389988.1| HU-related DNA-binding protein; phage SPbeta [Bacillus subtilis
          subsp. subtilis str. 168]
 gi|221310012|ref|ZP_03591859.1| hypothetical protein Bsubs1_11596 [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221314334|ref|ZP_03596139.1| hypothetical protein BsubsN3_11517 [Bacillus subtilis subsp.
          subtilis str. NCIB 3610]
 gi|221319256|ref|ZP_03600550.1| hypothetical protein BsubsJ_11443 [Bacillus subtilis subsp.
          subtilis str. JH642]
 gi|221323532|ref|ZP_03604826.1| hypothetical protein BsubsS_11572 [Bacillus subtilis subsp.
          subtilis str. SMY]
 gi|56405013|sp|P68573|DBH2_BACSU RecName: Full=SPBc2 prophage-derived DNA-binding protein HU 2
 gi|56405014|sp|P68574|DBH2_BPSPC RecName: Full=DNA-binding protein HU 2
 gi|2634525|emb|CAB14023.1| putative HU-related DNA-binding protein; phage SPbeta [Bacillus
          subtilis subsp. subtilis str. 168]
 gi|3025540|gb|AAC13035.1| histone-like prokaryotic DNA-binding protein family [Bacillus
          phage SPbeta]
          Length = 92

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G+S+K+    V  +F+ I ++   GE + I  F TF V+++ +R G
Sbjct: 1  MNKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +   FK +  LK  + 
Sbjct: 61 RNPQTGEEIDIPATKAPAFKPAKALKDAVK 90


>gi|332524208|ref|ZP_08400434.1| nucleoid protein Hbs [Rubrivivax benzoatilyticus JA2]
 gi|332107543|gb|EGJ08767.1| nucleoid protein Hbs [Rubrivivax benzoatilyticus JA2]
          Length = 90

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  I+++  LS+  +TR +      +  +   G+++ I+ F TF V ++ +R G
Sbjct: 1  MNKTDLIAHIAQQADLSKASATRALEAALEGVQTALKNGDSVAIAGFGTFEVSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + +++   +V  F+    LK  +
Sbjct: 61 RNPRTGEAIEVKAAKVPKFRPGKALKDLL 89


>gi|254420350|ref|ZP_05034074.1| integration host factor, beta subunit [Brevundimonas sp. BAL3]
 gi|196186527|gb|EDX81503.1| integration host factor, beta subunit [Brevundimonas sp. BAL3]
          Length = 117

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 5   ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+L++ ++ +   L+  +  R V  +  ++  +   G  +++  F  F V+ + +R+
Sbjct: 22  MIKSELIEKLAAENTHLTHAEVERLVNVILGKMTGALSEGGRVELRGFGAFSVRSRPARL 81

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           GRN +T + V++  + V  FK+   L++R+   
Sbjct: 82  GRNPRTGETVEVPAKAVPFFKSGKELRERLNAS 114


>gi|83311122|ref|YP_421386.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1]
 gi|82945963|dbj|BAE50827.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum
           AMB-1]
          Length = 117

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 44/91 (48%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + + DLV  +++  GLS+  +   +   F  I  +   G+ +++  F +F V Q+ ++ G
Sbjct: 27  MNKQDLVNKVAELSGLSKAAADNVIDATFAAITSALKAGDDVRLVGFGSFSVTQRAAKEG 86

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN +T   +KI   +   F A   LK  +  
Sbjct: 87  RNPRTGATIKIAASKAPKFTAGKGLKDAVNG 117


>gi|300857295|ref|YP_003782279.1| putative DNA-binding protein HU [Clostridium ljungdahlii DSM
          13528]
 gi|300437410|gb|ADK17177.1| predicted DNA-binding protein HU [Clostridium ljungdahlii DSM
          13528]
          Length = 91

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  I+++  L++KD    +      + ++  +G+ +++  F TF  +++  R+G
Sbjct: 1  MNKSELIAGIAEKSKLTKKDVEAALKGFIESVEETLEKGDKVQLVGFGTFETRKRAERIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T +E+KI    V VFKA    K R+  
Sbjct: 61 RNPRTKEEIKIPESTVPVFKAGKEFKDRVNK 91


>gi|227892085|ref|ZP_04009890.1| DNA-binding protein HU [Lactobacillus salivarius ATCC 11741]
 gi|227866124|gb|EEJ73545.1| DNA-binding protein HU [Lactobacillus salivarius ATCC 11741]
          Length = 91

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV  I+++ G+S+K++        + +  +   G  I++  F TF V+++ +R G
Sbjct: 1  MNKSELVSVIAEKMGVSKKEAEIATNAFISTVSTALTEGRKIQLVGFGTFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E+ +  R V VFKA   LK+ +  
Sbjct: 61 RNPQTGKEMLLPGRNVPVFKAGKSLKEAVNK 91


>gi|83858237|ref|ZP_00951759.1| integration host factor, alpha subunit [Oceanicaulis alexandrii
          HTCC2633]
 gi|83853060|gb|EAP90912.1| integration host factor, alpha subunit [Oceanicaulis alexandrii
          HTCC2633]
          Length = 100

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/96 (45%), Positives = 65/96 (67%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          S T+TR+DL  ++ +E GLSR +S   V  + + I D  V GE++K+SSF +F ++ K  
Sbjct: 3  SNTVTRADLSDAVHREVGLSRHESAELVEAVLDMISDKLVGGESVKLSSFGSFLLRDKTG 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          RVGRN +T +EV I+PRRV+VFK S +LK R+   +
Sbjct: 63 RVGRNPKTGEEVPIEPRRVLVFKPSQVLKDRVDAAL 98


>gi|85711630|ref|ZP_01042687.1| Bacterial nucleoid DNA-binding protein, IHF alpha subunit
          [Idiomarina baltica OS145]
 gi|85694490|gb|EAQ32431.1| Bacterial nucleoid DNA-binding protein, IHF alpha subunit
          [Idiomarina baltica OS145]
          Length = 98

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 52/92 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L + +  ++G+S++D+   V   F EI      GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAELAEVLFDKYGVSKQDAKDLVEAFFEEIRSVLESGEMVKLSGFGNFELRTKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV FK     K R+ +
Sbjct: 62 GRNPKTGEDIPISARRVVSFKPGQKFKSRVEN 93


>gi|21230442|ref|NP_636359.1| histone-like protein [Xanthomonas campestris pv. campestris str.
          ATCC 33913]
 gi|21241841|ref|NP_641423.1| histone-like protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|66769564|ref|YP_244326.1| histone-like protein [Xanthomonas campestris pv. campestris str.
          8004]
 gi|84622592|ref|YP_449964.1| histone-like protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|166710932|ref|ZP_02242139.1| histone-like protein [Xanthomonas oryzae pv. oryzicola BLS256]
 gi|188578368|ref|YP_001915297.1| DNA-binding protein HU [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|289664181|ref|ZP_06485762.1| histone-like protein [Xanthomonas campestris pv. vasculorum
          NCPPB702]
 gi|289668773|ref|ZP_06489848.1| histone-like protein [Xanthomonas campestris pv. musacearum
          NCPPB4381]
 gi|325914923|ref|ZP_08177255.1| bacterial nucleoid DNA-binding protein [Xanthomonas vesicatoria
          ATCC 35937]
 gi|325927444|ref|ZP_08188691.1| bacterial nucleoid DNA-binding protein [Xanthomonas perforans
          91-118]
 gi|21107221|gb|AAM35959.1| histone-like protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21112004|gb|AAM40283.1| histone-like protein [Xanthomonas campestris pv. campestris str.
          ATCC 33913]
 gi|66574896|gb|AAY50306.1| histone-like protein [Xanthomonas campestris pv. campestris str.
          8004]
 gi|84366532|dbj|BAE67690.1| histone-like protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188522820|gb|ACD60765.1| DNA-binding protein HU [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|325538816|gb|EGD10480.1| bacterial nucleoid DNA-binding protein [Xanthomonas vesicatoria
          ATCC 35937]
 gi|325542194|gb|EGD13689.1| bacterial nucleoid DNA-binding protein [Xanthomonas perforans
          91-118]
          Length = 90

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++    +S+ ++ R V  + +EI  +  +G+A+ +  F TF V+++  R G
Sbjct: 1  MNKTELIDGVAAAADISKAEAGRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   +   FKA   LK  + 
Sbjct: 61 RNPKTGDSIKIAASKNPAFKAGKALKDAVN 90


>gi|288941154|ref|YP_003443394.1| histone family protein DNA-binding protein [Allochromatium
          vinosum DSM 180]
 gi|288896526|gb|ADC62362.1| histone family protein DNA-binding protein [Allochromatium
          vinosum DSM 180]
          Length = 90

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ +++   +S+  + R +    + I  +   G+ + +  F TF +K++ +R G
Sbjct: 1  MNKSELIEKMAEAADISKAAAGRALDAFTDSIAVALKEGDTVSLIGFGTFSLKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   ++I   +   FKA   LK  + 
Sbjct: 61 RNPQTGATIEIKASKTPSFKAGKALKDAVQ 90


>gi|315924899|ref|ZP_07921116.1| DNA-binding protein HU [Pseudoramibacter alactolyticus ATCC
          23263]
 gi|315621798|gb|EFV01762.1| DNA-binding protein HU [Pseudoramibacter alactolyticus ATCC
          23263]
          Length = 91

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV +++++ GL +KD+ + +T   + I ++  +G+ + +  F TF V+ + +R G
Sbjct: 1  MNKSELVAAMAEKTGLPKKDAEKALTAFTDTIVETLQKGDKVSLVGFGTFDVRHRAARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T + ++I       FKA    K  +  
Sbjct: 61 LNPRTKEPIEIKASDAPAFKAGKAFKDALNK 91


>gi|29654618|ref|NP_820310.1| integration host factor subunit alpha [Coxiella burnetii RSA 493]
 gi|153207449|ref|ZP_01946149.1| integration host factor, alpha subunit [Coxiella burnetii 'MSU Goat
           Q177']
 gi|154706871|ref|YP_001424757.1| integration host factor subunit alpha [Coxiella burnetii Dugway
           5J108-111]
 gi|161831262|ref|YP_001597169.1| integration host factor subunit alpha [Coxiella burnetii RSA 331]
 gi|165924056|ref|ZP_02219888.1| integration host factor, alpha subunit [Coxiella burnetii RSA 334]
 gi|212212299|ref|YP_002303235.1| integration host factor subunit alpha [Coxiella burnetii CbuG_Q212]
 gi|212218732|ref|YP_002305519.1| integration host factor subunit alpha [Coxiella burnetii CbuK_Q154]
 gi|81722530|sp|Q83C16|IHFA_COXBU RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|189044697|sp|A9KGB5|IHFA_COXBN RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|189044698|sp|A9N8J9|IHFA_COXBR RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|226707371|sp|B6J7X5|IHFA_COXB1 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|226707372|sp|B6IZG2|IHFA_COXB2 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|29541886|gb|AAO90824.1| integration host factor alpha-subunit [Coxiella burnetii RSA 493]
 gi|120576580|gb|EAX33204.1| integration host factor, alpha subunit [Coxiella burnetii 'MSU Goat
           Q177']
 gi|154356157|gb|ABS77619.1| integration host factor alpha-subunit [Coxiella burnetii Dugway
           5J108-111]
 gi|161763129|gb|ABX78771.1| integration host factor, alpha subunit [Coxiella burnetii RSA 331]
 gi|165916488|gb|EDR35092.1| integration host factor, alpha subunit [Coxiella burnetii RSA 334]
 gi|212010709|gb|ACJ18090.1| integration host factor alpha-subunit [Coxiella burnetii CbuG_Q212]
 gi|212012994|gb|ACJ20374.1| integration host factor alpha-subunit [Coxiella burnetii CbuK_Q154]
          Length = 103

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/101 (34%), Positives = 61/101 (60%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++DL + +    GL+++++   V   F EI  S  RGE +K+S F  F+++ KG R 
Sbjct: 2   ALTKADLSEHLFNVVGLNKREAKDLVELFFKEISLSLERGEPVKLSGFGNFNLRDKGERP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           GRN +T +E+ I  RRVV F+A   LK R+  +++ ++  +
Sbjct: 62  GRNPKTGEEIPITARRVVTFRAGHKLKSRVEKNVKPKEEGE 102


>gi|332850673|ref|ZP_08432920.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013150]
 gi|332867047|ref|ZP_08437344.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013113]
 gi|332730510|gb|EGJ61826.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013150]
 gi|332734240|gb|EGJ65369.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013113]
          Length = 90

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K I+    L++  +T  +  + + I  +   GE + +  F TF VK++ +R G
Sbjct: 1  MNKSELIKHIASSASLTQAQATAALNAVESGISKALAAGEDVALIGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E++I   +V  FKA   LK+ + 
Sbjct: 61 RNPKTGEELQIAASKVPSFKAGKALKEAVK 90


>gi|229822881|ref|ZP_04448951.1| hypothetical protein GCWU000282_00171 [Catonella morbi ATCC
          51271]
 gi|229787694|gb|EEP23808.1| hypothetical protein GCWU000282_00171 [Catonella morbi ATCC
          51271]
          Length = 91

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 54/89 (60%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV+ ++ +  L++KD T  V  LF  I ++  +GE +++  F TF V+++ +R GR
Sbjct: 3  NKAELVEKVAAKTNLTKKDVTATVEALFETIQETLSKGEKVQVIGFGTFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+KI   +V  FKA   LK  + 
Sbjct: 63 NPQTGKEIKIAASKVPGFKAGKALKDAVK 91


>gi|121610067|ref|YP_997874.1| histone family protein DNA-binding protein [Verminephrobacter
          eiseniae EF01-2]
 gi|121554707|gb|ABM58856.1| histone family protein DNA-binding protein [Verminephrobacter
          eiseniae EF01-2]
          Length = 112

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 4  TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          ++TRSDLV+ ++     L+R D+   V  + + +  + VRG  I+I  F +F V     R
Sbjct: 5  SMTRSDLVEELAARLTHLTRHDAESAVKAILDAVGQALVRGHRIEIRGFGSFSVSHHPPR 64

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +GRN ++ + V I  +RV  FK    L++ +  
Sbjct: 65 MGRNPRSGEAVAIPQKRVPHFKPGKALREAVDK 97


>gi|332971083|gb|EGK10053.1| DNA-binding protein HU [Desmospora sp. 8437]
          Length = 90

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+++ G+++KD    V     E+  +   GE +++  F TF  +++  R G
Sbjct: 1  MNKNDLIHNIAQKSGMTKKDVETVVNGFLEEVTHALGSGEKVQLIGFGTFETRKRSGRSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   ++I    V  FKA + LK+ + 
Sbjct: 61 RNPQTGAVIEIPESTVPAFKAGTRLKEAVK 90


>gi|227821610|ref|YP_002825580.1| DNA-binding protein HRm [Sinorhizobium fredii NGR234]
 gi|227340609|gb|ACP24827.1| DNA-binding protein HRm [Sinorhizobium fredii NGR234]
          Length = 90

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ GLS+ D++  V  +F  I      G  I++  F  F V ++ +  G
Sbjct: 1  MNKNELVSAVAEKAGLSKADASSAVDAVFETIQGELKSGGDIRLVGFGNFSVTRREASKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T  EV I  R V  F A   LK  + 
Sbjct: 61 RNPSTGAEVDIPARNVPKFTAGKGLKDAVN 90


>gi|331268343|ref|YP_004394835.1| histone family protein DNA-binding protein [Clostridium botulinum
          BKT015925]
 gi|329124893|gb|AEB74838.1| histone family protein DNA-binding protein [Clostridium botulinum
          BKT015925]
          Length = 92

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  L++KD+   +      + ++ + G+ +++  F TF  +++  R G
Sbjct: 1  MNKAELITSMAEKSQLTKKDAEVALKAFIESVEEALMDGDKVQLVGFGTFETRERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T +E+ I    V VFKA    K+ + +
Sbjct: 61 RNPRTKEEITIPAATVPVFKAGKEFKEIVNN 91


>gi|260219592|emb|CBA26437.1| Integration host factor subunit alpha [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 118

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 56/97 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +  +T++ L   + ++ GL++++S   +   F+ I  S V G  +KIS F  F ++ K  
Sbjct: 19  TPALTKAQLSDLLFEQIGLNKRESKDMIDAFFDLIASSLVDGTDVKISGFGNFQIRTKAP 78

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           R GRN +T + + I  RRVV F AS  LK++I D+ +
Sbjct: 79  RPGRNPRTGEAIPIQARRVVTFHASHKLKEQIQDEGK 115


>gi|90419402|ref|ZP_01227312.1| DNA-binding protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90336339|gb|EAS50080.1| DNA-binding protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 92

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++S++  LS++D++  V  +F  +  +  +G+ I++  F TF V  + +  G
Sbjct: 1  MNKNELIAAVSEKAELSKQDASSAVDAVFETLQATMAKGDDIRLVGFGTFSVSHRAASKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T  EV I  R V  F A   LK  + +
Sbjct: 61 RNPSTGAEVDIPARNVPKFAAGKGLKDAVNN 91


>gi|121605691|ref|YP_983020.1| integration host factor subunit beta [Polaromonas
          naphthalenivorans CJ2]
 gi|120594660|gb|ABM38099.1| integration host factor, beta subunit [Polaromonas
          naphthalenivorans CJ2]
          Length = 104

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDLV+ ++     L+ +D+   V TL + + D+ VRG  I+I  F +F + ++  R+
Sbjct: 1  MTRSDLVEELAARFSQLTHRDAEHAVKTLLDAMSDTLVRGNRIEIRGFGSFSINRRPPRM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V I  +RV  FK    L++ +
Sbjct: 61 GRNPRSGESVAIPEKRVPHFKPGKALREAV 90


>gi|317131350|ref|YP_004090664.1| histone family protein DNA-binding protein [Ethanoligenens
          harbinense YUAN-3]
 gi|315469329|gb|ADU25933.1| histone family protein DNA-binding protein [Ethanoligenens
          harbinense YUAN-3]
          Length = 91

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L+  ++++ GLS+KD+ +    L + I +S V  E +++  F TF V  + +R G
Sbjct: 1  MTKAELIAKVAEKSGLSKKDAEKATGALIDSIVESLVAEEKVQLVGFGTFEVHHREARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T +E+ I      VFKA    K  +  
Sbjct: 61 RNPRTKEEITIPASAYPVFKAGKPFKDAVSK 91


>gi|258620637|ref|ZP_05715674.1| DNA-binding protein HU [Vibrio mimicus VM573]
 gi|258624505|ref|ZP_05719449.1| DNA-binding protein HU [Vibrio mimicus VM603]
 gi|262163814|ref|ZP_06031554.1| DNA-binding protein HU-alpha [Vibrio mimicus VM223]
 gi|262172622|ref|ZP_06040300.1| DNA-binding protein HU-alpha [Vibrio mimicus MB-451]
 gi|262404997|ref|ZP_06081549.1| DNA-binding protein HU-alpha [Vibrio sp. RC586]
 gi|258583202|gb|EEW08007.1| DNA-binding protein HU [Vibrio mimicus VM603]
 gi|258587152|gb|EEW11864.1| DNA-binding protein HU [Vibrio mimicus VM573]
 gi|261893698|gb|EEY39684.1| DNA-binding protein HU-alpha [Vibrio mimicus MB-451]
 gi|262027794|gb|EEY46459.1| DNA-binding protein HU-alpha [Vibrio mimicus VM223]
 gi|262348836|gb|EEY97977.1| DNA-binding protein HU-alpha [Vibrio sp. RC586]
          Length = 90

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  L++  +   +      +  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLTKAQAKAALEATLGAVEGALKEGDQVQLIGFGTFKVNHRSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E+KI    V  F A   LK  I 
Sbjct: 61 RNPKTGEEIKIAAANVPAFVAGKALKDAIK 90


>gi|238760269|ref|ZP_04621413.1| DNA-binding protein HU-alpha [Yersinia aldovae ATCC 35236]
 gi|238701533|gb|EEP94106.1| DNA-binding protein HU-alpha [Yersinia aldovae ATCC 35236]
          Length = 91

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKAQAKAALESTLGAITESLKEGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|37526554|ref|NP_929898.1| integration host factor subunit alpha [Photorhabdus luminescens
          subsp. laumondii TTO1]
 gi|253989352|ref|YP_003040708.1| integration host factor subunit alpha [Photorhabdus asymbiotica
          subsp. asymbiotica ATCC 43949]
 gi|81707667|sp|Q7N3Q2|IHFA_PHOLL RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|36785985|emb|CAE15037.1| integration host factor alpha chain (IHF-alpha) [Photorhabdus
          luminescens subsp. laumondii TTO1]
 gi|253780802|emb|CAQ83964.1| integration host factor subunit alpha (ihf-alpha) [Photorhabdus
          asymbiotica]
          Length = 98

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 54/95 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ +++ ++ G+S++D+   V   F E+  S   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSENLFEKLGISKRDAKDLVELFFEEVRRSLENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +++ I  RRVV F+    LK R+     
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEKATP 96


>gi|14194639|sp|Q9XB22|DBH_STRDO RecName: Full=DNA-binding protein HU
 gi|5209330|gb|AAD40809.1|L38959_1 histone-like DNA-binding protein [Streptococcus sobrinus]
          Length = 91

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 50/89 (56%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V T+F+ I     +GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDTVFSSIEGFLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E+KI   +V  FKA   LK  + 
Sbjct: 63 NPQTGAEIKIAASKVPAFKAGKALKDAVK 91


>gi|325274292|ref|ZP_08140403.1| DNA-binding protein HU-beta [Pseudomonas sp. TJI-51]
 gi|324100575|gb|EGB98310.1| DNA-binding protein HU-beta [Pseudomonas sp. TJI-51]
          Length = 90

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    +S+  + + +  + + +  +   G+ + +  F TF VK++  R G
Sbjct: 1  MNKSELIDAIAVSADISKAAAGKALDAVIDSVTGALKAGDDVVLVGFGTFTVKERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI   +V  FKA   LK  + 
Sbjct: 61 RNPQTGKAIKIAAAKVPGFKAGKGLKDAVN 90


>gi|254494814|ref|ZP_01051666.2| DNA-binding protein [Polaribacter sp. MED152]
 gi|213690396|gb|EAQ41094.2| DNA-binding protein [Polaribacter sp. MED152]
          Length = 117

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 48/90 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +SDL+ +++ + G+S+  +   + +  + +  +   G+ + +  F TF V  + +R G
Sbjct: 28  MNKSDLIDAMAADAGISKVAAKAALESFTDNVTSALKGGDKVALVGFGTFSVSHRAARSG 87

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN QT + ++I  + V  FKA + L   + 
Sbjct: 88  RNPQTGKTIQIAAKNVAKFKAGAGLSDAVN 117


>gi|400045|sp|P30787|IHFA_RHOCA RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|151944|gb|AAA26128.1| integration host factor [Rhodobacter capsulatus]
          Length = 100

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/96 (48%), Positives = 68/96 (70%), Gaps = 1/96 (1%)

Query: 1  MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          MS KT+TR DL +++ +E GLSR +S + V T+   + D+ VRGE +KISSF TF V+ K
Sbjct: 1  MSEKTLTRMDLSEAVFREVGLSRNESAQLVETVLQHMSDALVRGETVKISSFGTFSVRDK 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           SR+GRN +T +EV I PRRV+ F+ S ++K R+ +
Sbjct: 61 TSRMGRNPKTGEEVPISPRRVLSFRPSHLMKDRVAE 96


>gi|222153394|ref|YP_002562571.1| DNA-binding protein HU [Streptococcus uberis 0140J]
 gi|222114207|emb|CAR42760.1| DNA-binding protein HU [Streptococcus uberis 0140J]
          Length = 91

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 49/89 (55%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F+ I     +GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFSAIEGFLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E+KI   +V  FKA   LK  + 
Sbjct: 63 NPQTGAEIKIAASKVPAFKAGKALKDAVK 91


>gi|71278109|ref|YP_268791.1| HU family DNA-binding protein [Colwellia psychrerythraea 34H]
 gi|71143849|gb|AAZ24322.1| DNA-binding protein, HU family [Colwellia psychrerythraea 34H]
          Length = 91

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  IS+   +++  + R + +L + +      G  + +  F T+ V  + +R G
Sbjct: 1  MNKSELIAKISEGADITKASAGRALDSLIDSVTTELASGGDVALVGFGTYKVNDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT  E++I   +V  FKA   LK  +  
Sbjct: 61 RNPQTGAEIQISAAKVPAFKAGKALKDAVNG 91


>gi|83591632|ref|YP_425384.1| integration host factor, subunit beta [Rhodospirillum rubrum ATCC
           11170]
 gi|123726093|sp|Q2RXP8|IHFB_RHORT RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|83574546|gb|ABC21097.1| Integration host factor, beta subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 100

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 60/103 (58%), Gaps = 4/103 (3%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+  I++    L ++D  R V+T+F+EI D+  RG+ +++  F  F VK++ +R+
Sbjct: 1   MTKSELIARIAERNPHLYQRDVERIVSTIFDEIADALARGDRVELRGFGAFSVKRRDARM 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN +T + V +D +    FK    L++ +     G   + DD
Sbjct: 61  GRNPRTGETVDVDAKVAPYFKTGKQLRELLNG---GESESDDD 100


>gi|222085523|ref|YP_002544053.1| integration host factor, alpha subunit [Agrobacterium radiobacter
           K84]
 gi|254803507|sp|B9JCZ0|IHFA_AGRRK RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|221722971|gb|ACM26127.1| integration host factor, alpha subunit [Agrobacterium radiobacter
           K84]
          Length = 112

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/110 (48%), Positives = 74/110 (67%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +S+ ++ GLSR +S   V T+ +EIC++ VRGE +K+SSFATF V+ K  
Sbjct: 3   GKTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111
           R+GRN +T +EV I PRRV+ FKAS++LK RI+     RK         S
Sbjct: 63  RIGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHASRKAKARPANPAS 112


>gi|329894498|ref|ZP_08270312.1| Integration host factor beta subunit [gamma proteobacterium
          IMCC3088]
 gi|328923023|gb|EGG30348.1| Integration host factor beta subunit [gamma proteobacterium
          IMCC3088]
          Length = 97

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+++I+ +   LS KD    V ++  ++ D+   G+ I+I  F +F +  +  R+
Sbjct: 1  MTKSELIEAIAAKQTQLSLKDVELAVKSVLEQMSDALSSGDRIEIRGFGSFSLHYREPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T   V ++ + V  FK    L++R+   +
Sbjct: 61 GRNPKTGDSVDLNGKYVPHFKPGKELRERVNKGL 94


>gi|240144365|ref|ZP_04742966.1| DNA-binding protein HU [Roseburia intestinalis L1-82]
 gi|257203616|gb|EEV01901.1| DNA-binding protein HU [Roseburia intestinalis L1-82]
 gi|291535593|emb|CBL08705.1| Bacterial nucleoid DNA-binding protein [Roseburia intestinalis
          M50/1]
 gi|291540838|emb|CBL13949.1| Bacterial nucleoid DNA-binding protein [Roseburia intestinalis
          XB6B4]
          Length = 91

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++  LS+KD+   +    + + +   +GE I++  F TF V ++  R G
Sbjct: 1  MNKAELVAAMAEKTELSKKDAEAALKAFTDVVAEELKKGEKIQLVGFGTFEVSERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN Q+ +E+ I   +   FKA   LK  + 
Sbjct: 61 RNPQSGKEMVIPASKAPKFKAGKALKDMVN 90


>gi|241764521|ref|ZP_04762541.1| histone family protein DNA-binding protein [Acidovorax
          delafieldii 2AN]
 gi|241366057|gb|EER60661.1| histone family protein DNA-binding protein [Acidovorax
          delafieldii 2AN]
          Length = 106

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 4  TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          ++TRSDLV+ ++     L+ +D+   V TL + + D+ VRG  I+I  F +F V ++  R
Sbjct: 5  SMTRSDLVEELAARFSQLTHRDAEFAVKTLLDAVGDALVRGHRIEIRGFGSFSVNRRPPR 64

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +GRN ++ + V I  +RV  FK    L++ +
Sbjct: 65 MGRNPRSGEAVAIPEKRVPHFKPGKALREAV 95


>gi|23501983|ref|NP_698110.1| DNA-binding protein HU [Brucella suis 1330]
 gi|23347933|gb|AAN30025.1| DNA-binding protein HU [Brucella suis 1330]
          Length = 91

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ GL++ D+   V  +   +  +   GE +++  F  F V  + +  G
Sbjct: 1  MNKNELVAAVAEKGGLTKADAGTAVDVVLASVTAALKAGEEVRLPGFGVFSVSHRAASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T +EV I  R V  F A   LK  +  
Sbjct: 61 RNPSTGKEVAIPARNVPKFSAGKGLKDAVNG 91


>gi|42523141|ref|NP_968521.1| integration host factor, alpha subunit [Bdellovibrio bacteriovorus
           HD100]
 gi|39575346|emb|CAE79514.1| integration host factor, alpha subunit [Bdellovibrio bacteriovorus
           HD100]
          Length = 123

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 60/97 (61%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T++D+V+++ ++ G S+K+++  V  +F+ +      GE +KIS F  F V+ K  R+
Sbjct: 13  TVTKADIVENVYQKIGFSKKEASELVELVFDTLKTVLQDGEKVKISGFGNFVVRGKNERI 72

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN QT +++KI  RRV+ F+ S +LK  +  +    
Sbjct: 73  GRNPQTGEQIKISARRVLTFRPSQVLKAMLNGEEYAH 109


>gi|194335610|ref|YP_002017404.1| histone family protein DNA-binding protein [Pelodictyon
          phaeoclathratiforme BU-1]
 gi|194308087|gb|ACF42787.1| histone family protein DNA-binding protein [Pelodictyon
          phaeoclathratiforme BU-1]
          Length = 102

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 58/98 (59%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M KT T++DLV  I+ + GL++ ++   V +LF  I DS   G+ I+I  F +F+++ K 
Sbjct: 1  MGKTTTKADLVNVIAHKTGLTKNETESVVDSLFESIIDSLKTGKRIEIRGFGSFNIRHKN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           R  RN +T ++V ++P+ V  FK S   K  + + ++
Sbjct: 61 FRQARNPRTGEKVTVEPKNVPTFKISKEFKHAVSESLK 98


>gi|261210437|ref|ZP_05924731.1| DNA-binding protein HU-alpha [Vibrio sp. RC341]
 gi|260840495|gb|EEX67061.1| DNA-binding protein HU-alpha [Vibrio sp. RC341]
          Length = 90

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  L++  +   +      +  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLTKAQAKAALEATLGAVEGALKDGDQVQLIGFGTFKVNHRSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E+KI    V  F A   LK  I 
Sbjct: 61 RNPKTGEEIKIAAANVPAFVAGKALKDAIK 90


>gi|78187578|ref|YP_375621.1| histone-like DNA-binding protein [Chlorobium luteolum DSM 273]
 gi|78167480|gb|ABB24578.1| Histone-like DNA-binding protein [Chlorobium luteolum DSM 273]
          Length = 102

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 56/101 (55%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           M  T T++DLV  I+   GL++ ++   V  LF  I DS   G  I+I  F +F+++ K 
Sbjct: 1   MGTTTTKADLVNVIAHRTGLTKNETETVVDALFESIIDSLKAGRRIEIRGFGSFNIRYKN 60

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
            R  RN +T ++V ++P+ V  FK S   K+ + + ++  +
Sbjct: 61  LRQARNPRTGEKVTVEPKNVPTFKISKEFKQAVSESLKSSQ 101


>gi|119775086|ref|YP_927826.1| integration host factor subunit alpha [Shewanella amazonensis SB2B]
 gi|166918523|sp|A1S700|IHFA_SHEAM RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|119767586|gb|ABM00157.1| integration host factor, alpha subunit [Shewanella amazonensis
           SB2B]
          Length = 98

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 53/97 (54%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++++ + + +  G++++ +   V T F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2   ALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRSALESGEQVKLSGFGNFDLRDKNQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T +++ I  RRVV F+    LK R+      +
Sbjct: 62  GRNPKTGEDIPISARRVVTFRPGQKLKSRVESSNSEK 98


>gi|254490897|ref|ZP_05104079.1| integration host factor, beta subunit [Methylophaga thiooxidans
          DMS010]
 gi|224463806|gb|EEF80073.1| integration host factor, beta subunit [Methylophaga thiooxydans
          DMS010]
          Length = 96

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+SDL++ +S++  L + +D    V  +  ++ DS  +G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSDLIEVLSEKQSLLNYRDVELAVKLILEQMSDSLSQGDRIEIRGFGSFTLHHRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN ++ + VK+D + V  FK    L+ R+ D 
Sbjct: 61 GRNPKSGESVKLDEKYVPHFKPGKELRDRVNDG 93


>gi|284006261|emb|CBA71497.1| integration host factor alpha-subunit [Arsenophonus nasoniae]
          Length = 98

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 54/92 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ +S+ ++ G+S++D+   V   F E+  S   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSESLFEKLGISKRDAKDLVELFFEEVRRSLENGEQVKLSGFGNFDLRDKSQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK R+  
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKGRVEK 93


>gi|239629128|ref|ZP_04672159.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239519274|gb|EEQ59140.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47FAA]
          Length = 91

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  LS+KD+ + V    + + +  V+G  +++  F TF V ++ +R G
Sbjct: 1  MNKTELIAAVAEKAELSKKDAEKAVKAFTDAVAEELVKGGKVQLVGFGTFEVAERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T   + I   +   FKA   LK  +  
Sbjct: 61 RNPKTGNAMPIPASKTPKFKAGKALKDEVNK 91


>gi|325922711|ref|ZP_08184451.1| bacterial nucleoid DNA-binding protein [Xanthomonas gardneri ATCC
          19865]
 gi|325546828|gb|EGD17942.1| bacterial nucleoid DNA-binding protein [Xanthomonas gardneri ATCC
          19865]
          Length = 90

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++    +S+ ++ R V  + +EI  +  +GEA+ +  F TF V+++  R G
Sbjct: 1  MNKTELIDGVAAAADISKAEAGRAVDAVVSEITKALKKGEAVTLVGFGTFQVRERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   +   FKA   LK  + 
Sbjct: 61 RNPKTGDSIKIAASKNPAFKAGKALKDAVN 90


>gi|226941262|ref|YP_002796336.1| HupB1 [Laribacter hongkongensis HLHK9]
 gi|226716189|gb|ACO75327.1| HupB1 [Laribacter hongkongensis HLHK9]
          Length = 89

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    L +  + + +  +   + ++  +G+ + +  F +F+V ++  R G
Sbjct: 1  MNKSELIDAIAASADLPKAAAGKALDGMIEALTEALKKGDTVTLVGFGSFYVGERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E+ I   +   F+    LK  +
Sbjct: 61 RNPKTGEEITIPSAKTPKFRPGKALKDAL 89


>gi|189425415|ref|YP_001952592.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
 gi|189421674|gb|ACD96072.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
          Length = 94

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 59/92 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV+ I    GLSRKD+   + ++F+ + +S   GE IKIS F +F V +K +R G
Sbjct: 1  MTKTDLVEKIQASIGLSRKDAAVMLESVFSIMKESLEAGETIKISGFGSFVVSRKAARRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN QT + + I+ R+V+ FK  S+L+  I  +
Sbjct: 61 RNPQTGEAITIEARKVLTFKPGSVLRDAINGE 92


>gi|190015068|ref|YP_001966692.1| DNA-binding protein HU [Bacillus cereus]
 gi|190015334|ref|YP_001967017.1| DNA-binding protein HU [Bacillus cereus]
 gi|218848460|ref|YP_002455066.1| DNA-binding protein HU 1 [Bacillus cereus AH820]
 gi|228943061|ref|ZP_04105556.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228975886|ref|ZP_04136415.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|71025122|gb|AAZ17499.1| HbsU-like protein [Bacillus thuringiensis]
 gi|116584744|gb|ABK00859.1| DNA-binding protein HU [Bacillus cereus]
 gi|116585015|gb|ABK01124.1| DNA-binding protein HU [Bacillus cereus]
 gi|218540511|gb|ACK92907.1| DNA-binding protein HU 1 [Bacillus cereus AH820]
 gi|228783849|gb|EEM31899.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228816590|gb|EEM62720.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|326943313|gb|AEA19208.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 90

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K ++++  L++KD+      + + I  +    E ++I  F TF V+++ +R G
Sbjct: 1  MNKTELTKVVAEKAELTQKDAAAATQAVLDTITTALANEEKVQILGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +   FKA   LK  + 
Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELKDAVK 90


>gi|253681243|ref|ZP_04862041.1| DNA-binding protein HU [Clostridium botulinum D str. 1873]
 gi|253562481|gb|EES91932.1| DNA-binding protein HU [Clostridium botulinum D str. 1873]
          Length = 92

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  L++KD+   +      + ++ + G+ +++  F TF  +++  R G
Sbjct: 1  MNKAELITSMAEKSQLTKKDAEVALRAFIESVEEALMDGDKVQLVGFGTFETRERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T +E+ I    V VFKA    K+ + +
Sbjct: 61 RNPRTKEEITIPAATVPVFKAGKEFKEIVNN 91


>gi|40062481|gb|AAR37433.1| integration host factor, beta subunit, putative [uncultured marine
           bacterium 105]
          Length = 115

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 5/107 (4%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+++LV+ +S+   L++K S   V T+F  I  +  RGE I++  F +F ++Q+  R G
Sbjct: 1   MTKAELVEEVSRVSELTKKHSEVIVDTVFKSIVTALHRGEKIELRGFGSFRLRQREPRKG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111
           RN +T   V + P++V  FK    LK+ I      R+  +   + PS
Sbjct: 61  RNPKTGDRVDVPPKKVPYFKPGKDLKELIN-----RRSKESTASIPS 102


>gi|269961757|ref|ZP_06176117.1| integration host factor beta subunit [Vibrio harveyi 1DA3]
 gi|269833540|gb|EEZ87639.1| integration host factor beta subunit [Vibrio harveyi 1DA3]
          Length = 94

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + +++  LS K+    V  +   +  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLCAEQTHLSAKEVEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T  +V+++ + V  FK    L++R+  D
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVNID 93


>gi|221135499|ref|ZP_03561802.1| HU family DNA-binding protein [Glaciecola sp. HTCC2999]
          Length = 90

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 44/88 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    + + ++ R +      +         +++  F TF V+++ +R G
Sbjct: 1  MNKSELIEKIADAADIKKVEAGRALDAFIEAVTAELKADGTVQLVGFGTFQVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN QT  E++I   +V  FKA   LK  
Sbjct: 61 RNPQTGAEIQIAAAKVPAFKAGKALKDA 88


>gi|322507540|gb|ADX02994.1| Putative bacterial nucleoid DNA-binding protein [Acinetobacter
          baumannii 1656-2]
          Length = 94

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS  +T+  + ++I+K+ G+S+  +   + T  + I  S   G+ + +  F TF VK + 
Sbjct: 1  MSN-VTKKHIAETIAKKVGISKSQAEEALNTFESIIQGSLADGDQVTLVGFGTFAVKDRA 59

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +R GRN +T +E++I   +V  FK    LK+ +  
Sbjct: 60 ARKGRNPKTGEEIQIAATKVPTFKPGKALKEAVNG 94


>gi|119470902|ref|ZP_01613486.1| DNA-binding protein HU-beta (NS1) (HU-1) [Alteromonadales
          bacterium TW-7]
 gi|119445924|gb|EAW27204.1| DNA-binding protein HU-beta (NS1) (HU-1) [Alteromonadales
          bacterium TW-7]
          Length = 91

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I+ +  +S+  +TR +      +  +   G+++ +  F TF VK++ +R G
Sbjct: 1  MNKAQLVEKIATDAEISKAAATRALDAFTGAVTSALKEGDSVALVGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I    +  FKA   LK ++ 
Sbjct: 61 RNPQTGAEIQIAAATIPSFKAGKGLKDQVN 90


>gi|91774372|ref|YP_544128.1| nucleoid protein HU beta subunit [Methylobacillus flagellatus KT]
 gi|91708359|gb|ABE48287.1| bacterial nucleoid protein HU beta subunit [Methylobacillus
          flagellatus KT]
          Length = 90

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+KE G+S+  + + V      +  +   G+ + +  F TF V ++ +R G
Sbjct: 1  MNKTELIEEIAKEAGISKAAAGKAVDAFTASVTAALKSGDTVTLIGFGTFGVSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI  R+   FKA   LK  + 
Sbjct: 61 RNPQTGKEIKIAARKAPSFKAGKALKDALN 90


>gi|221639022|ref|YP_002525284.1| integration host factor subunit alpha [Rhodobacter sphaeroides
           KD131]
 gi|221159803|gb|ACM00783.1| Integration host factor subunit alpha [Rhodobacter sphaeroides
           KD131]
          Length = 101

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/100 (43%), Positives = 66/100 (66%), Gaps = 1/100 (1%)

Query: 1   MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           MS KT+TR DL +++ +E GLSR +S + V ++   + D+   GE +KISSF TF V+ K
Sbjct: 2   MSDKTLTRMDLSEAVFREVGLSRNESAQLVESVLQHVSDALASGETVKISSFGTFTVRDK 61

Query: 60  GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
            +R+GRN +T  EV I PRRV+ F+ S ++K+R+    + 
Sbjct: 62  SARIGRNPKTGDEVPISPRRVLTFRPSHLMKERVAAGGKN 101


>gi|327189794|gb|EGE56935.1| integration host factor protein, alpha subunit [Rhizobium etli
           CNPAF512]
          Length = 117

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/102 (50%), Positives = 73/102 (71%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +S+ ++ GLSR +S   V T+ +EIC++ VRGE +K+SSFATF V+ K  
Sbjct: 8   GKTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNE 67

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           R+GRN +T +EV I PRRV+ FKAS++LK RI+     RK  
Sbjct: 68  RIGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVSRKVK 109


>gi|320355221|ref|YP_004196560.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
 gi|320123723|gb|ADW19269.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
          Length = 93

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 54/92 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+SDL+++++++  L  KD+   V T+   + D+   G  +++  F +F V++     G
Sbjct: 1  MTKSDLIQALAEQMNLPVKDAKSIVDTIIGTMVDALAEGRGVELRGFGSFQVREYEGYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T +++K+ P+++  FK    L+ RI  +
Sbjct: 61 RNPKTGEQIKVAPKKLPFFKVGKDLRDRINSE 92


>gi|319408367|emb|CBI82020.1| DNA-binding protein [Bartonella schoenbuchensis R1]
          Length = 92

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV SI+++ G+S+  +   +      + ++   G  +++  F +F V ++ +  G
Sbjct: 1  MNKSELVNSIAEKAGVSKAQAGSILDAFIASVTEALASGGDVRLPGFGSFEVSKRAATKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T  E+ I  R V  F A   LK+ +  
Sbjct: 61 RNPSTGVEIHIPARSVPKFSAGKSLKEAVNK 91


>gi|270263573|ref|ZP_06191842.1| histone family protein DNA-binding protein [Serratia odorifera
           4Rx13]
 gi|270042457|gb|EFA15552.1| histone family protein DNA-binding protein [Serratia odorifera
           4Rx13]
          Length = 101

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 47/90 (52%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +S L+  I+    +S+  + R +  +   + +S   G+ + +  F +F V+++ +R G
Sbjct: 12  VNKSQLIDKIAAGADISKAAAGRALDAVIASVTESLKEGDDVALVGFGSFTVRERSARTG 71

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN QT +E+ I   +V  F+A   LK  + 
Sbjct: 72  RNPQTGKEINIAAAKVPAFRAGKALKDAVN 101


>gi|77463165|ref|YP_352669.1| integration host factor subunit alpha [Rhodobacter sphaeroides
           2.4.1]
 gi|126462037|ref|YP_001043151.1| integration host factor subunit alpha [Rhodobacter sphaeroides ATCC
           17029]
 gi|146277950|ref|YP_001168109.1| integration host factor subunit alpha [Rhodobacter sphaeroides ATCC
           17025]
 gi|332558039|ref|ZP_08412361.1| integration host factor subunit alpha [Rhodobacter sphaeroides
           WS8N]
 gi|123592159|sp|Q3J366|IHFA_RHOS4 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|166918520|sp|A3PJ63|IHFA_RHOS1 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|166918521|sp|A4WTU0|IHFA_RHOS5 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|77387583|gb|ABA78768.1| Histone-like DNA-binding protein (IHF) [Rhodobacter sphaeroides
           2.4.1]
 gi|126103701|gb|ABN76379.1| integration host factor, alpha subunit [Rhodobacter sphaeroides
           ATCC 17029]
 gi|145556191|gb|ABP70804.1| integration host factor, alpha subunit [Rhodobacter sphaeroides
           ATCC 17025]
 gi|332275751|gb|EGJ21066.1| integration host factor subunit alpha [Rhodobacter sphaeroides
           WS8N]
          Length = 100

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/100 (43%), Positives = 66/100 (66%), Gaps = 1/100 (1%)

Query: 1   MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           MS KT+TR DL +++ +E GLSR +S + V ++   + D+   GE +KISSF TF V+ K
Sbjct: 1   MSDKTLTRMDLSEAVFREVGLSRNESAQLVESVLQHVSDALASGETVKISSFGTFTVRDK 60

Query: 60  GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
            +R+GRN +T  EV I PRRV+ F+ S ++K+R+    + 
Sbjct: 61  SARIGRNPKTGDEVPISPRRVLTFRPSHLMKERVAAGGKN 100


>gi|89056076|ref|YP_511527.1| integration host factor subunit beta [Jannaschia sp. CCS1]
 gi|123400948|sp|Q28LB0|IHFB_JANSC RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|88865625|gb|ABD56502.1| integration host factor beta subunit [Jannaschia sp. CCS1]
          Length = 95

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ +S +   L ++D  R V ++F E+ D+   G+ +++  F  F VK++ +R+
Sbjct: 1  MIRSELIQKLSDENPHLYQRDVERIVNSIFEEVIDALAAGDRVELRGFGAFSVKKRDARI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V ++ + V  FKA  +L+ R+  
Sbjct: 61 GRNPRTGESVSVEEKHVPFFKAGKLLRDRLNG 92


>gi|295109533|emb|CBL23486.1| Bacterial nucleoid DNA-binding protein [Ruminococcus obeum
          A2-162]
          Length = 91

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++KE  LS+KD    + +  + + D   +G  I++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAMAKETNLSKKDVEAVLKSFTDVVADELKKGGKIQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + + I   +   FKA   LK  + 
Sbjct: 61 RNPQTGETMTIAASKAPKFKAGKALKDMVN 90


>gi|299133339|ref|ZP_07026534.1| integration host factor, beta subunit [Afipia sp. 1NLS2]
 gi|298593476|gb|EFI53676.1| integration host factor, beta subunit [Afipia sp. 1NLS2]
          Length = 103

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 1/100 (1%)

Query: 5   ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV+ I++    L ++D    V  +  EI  +  RG+ +++  F  F VK + +R 
Sbjct: 1   MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVSALSRGDRVELRGFGAFSVKHRPARA 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           GRN +T + V ++ + V  FK    +++R+  +    +  
Sbjct: 61  GRNPRTGEHVPVEQKSVPFFKTGKEMRERLNRNGHDEEAA 100


>gi|229035244|ref|ZP_04189179.1| DNA-binding protein HU 1 [Bacillus cereus AH1271]
 gi|228728056|gb|EEL79097.1| DNA-binding protein HU 1 [Bacillus cereus AH1271]
          Length = 90

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L + ++++  L++KD+      + + I  +    E ++I  F TF V+++ +R G
Sbjct: 1  MNKTELTRVVAEKAELTQKDAAAATQAVLDTITTALANEEKVQILGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +   FKA   LK  + 
Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELKDAVK 90


>gi|94497483|ref|ZP_01304053.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58]
 gi|94423114|gb|EAT08145.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58]
          Length = 90

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+ ++++  GLS+ D+T+ V  +F+ I  +  +G+ +++  F TF V Q+ +  G
Sbjct: 1  MNKQDLISTVAESSGLSKNDATKAVEGVFDAITGALKKGDEVRLVGFGTFSVSQRKASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I       FKA   LK  + 
Sbjct: 61 RNPRTGETMTIKASAQPKFKAGKGLKDSVN 90


>gi|298368498|ref|ZP_06979816.1| DNA-binding protein HU-beta [Neisseria sp. oral taxon 014 str.
          F0314]
 gi|298282501|gb|EFI23988.1| DNA-binding protein HU-beta [Neisseria sp. oral taxon 014 str.
          F0314]
          Length = 91

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 44/91 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I+ E  LS++ +  FV    + +      G  + +  F TFH  Q   R G
Sbjct: 1  MNKSELIQAIADEAELSKRAAAEFVDAFVSVVTQELKDGNDVTLVGFGTFHTAQSAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + + I  R+   F+    LK  +  
Sbjct: 61 RNPKTGEPLTIAARKTPKFRPGKALKDAVNG 91


>gi|239814620|ref|YP_002943530.1| integration host factor, subunit beta [Variovorax paradoxus S110]
 gi|239801197|gb|ACS18264.1| integration host factor, beta subunit [Variovorax paradoxus S110]
          Length = 104

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/104 (32%), Positives = 59/104 (56%), Gaps = 6/104 (5%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +TRSDLV+ ++     L+ +D+   V T+ + + D+ VRG  I+I  F +F V ++  R+
Sbjct: 1   MTRSDLVEELAARFAQLTHRDAEYAVKTILDAMSDALVRGHRIEIRGFGSFSVTRRPPRI 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD-----DMRGRKC 102
           GRN ++ + V+I  +RV  FK    L++ +       D +GRK 
Sbjct: 61  GRNPRSGESVQIPEKRVPHFKPGKALREAVDAKTAELDAKGRKA 104


>gi|118443809|ref|YP_877121.1| DNA binding protein HU [Clostridium novyi NT]
 gi|118134265|gb|ABK61309.1| DNA binding protein HU [Clostridium novyi NT]
          Length = 92

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ S++++  L++KD    +      + ++ + G+ +++  F TF  +++  R G
Sbjct: 1  MNKSELITSMAEKSQLTKKDVEVALKAFIESVEEALMDGDKVQLVGFGTFETRERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T +E+ I    V VFKA    K+ + +
Sbjct: 61 RNPRTKEEITIPAATVPVFKAGKEFKEIVNN 91


>gi|240850682|ref|YP_002972082.1| integration host factor subunit alpha [Bartonella grahamii as4aup]
 gi|240267805|gb|ACS51393.1| integration host factor subunit alpha [Bartonella grahamii as4aup]
          Length = 104

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/102 (52%), Positives = 71/102 (69%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           SKT+TR+DL   + K  GLS  +S   V  + +EIC+S VRGEA+K+SSFATF V+ K  
Sbjct: 3   SKTVTRADLASVVCKRVGLSHTESAALVELVLDEICNSLVRGEAVKLSSFATFQVRSKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           RVGRN +T  E  I PRRVV FKA+++LK+RI+D  R R+  
Sbjct: 63  RVGRNPKTGVEAPIPPRRVVTFKAANVLKQRILDSHRARQKK 104


>gi|218459471|ref|ZP_03499562.1| integration host factor subunit alpha [Rhizobium etli Kim 5]
 gi|218662580|ref|ZP_03518510.1| integration host factor subunit alpha [Rhizobium etli IE4771]
          Length = 112

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/102 (50%), Positives = 73/102 (71%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +S+ ++ GLSR +S   V T+ +EIC++ VRGE +K+SSFATF V+ K  
Sbjct: 3   GKTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           R+GRN +T +EV I PRRV+ FKAS++LK RI+     RK  
Sbjct: 63  RIGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVSRKVK 104


>gi|88859784|ref|ZP_01134424.1| integration host factor (IHF), alpha subunit, DNA-bending
          protein, DNA replication [Pseudoalteromonas tunicata
          D2]
 gi|88818801|gb|EAR28616.1| integration host factor (IHF), alpha subunit, DNA-bending
          protein, DNA replication [Pseudoalteromonas tunicata
          D2]
          Length = 99

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 52/91 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + +  + G+++KD+   V + F  I  +   GE IK+S F  F ++ K  R 
Sbjct: 2  ALTKADIAEHLFVKLGINKKDAKELVESFFENIRAALESGEQIKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +++ I  RRVV F+    LK R+ 
Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRVE 92


>gi|307292720|ref|ZP_07572566.1| histone family protein DNA-binding protein [Sphingobium
          chlorophenolicum L-1]
 gi|306880786|gb|EFN12002.1| histone family protein DNA-binding protein [Sphingobium
          chlorophenolicum L-1]
          Length = 90

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+ ++++  GLS+ D+++ V  +F+ I  +  +G+ +++  F TF V Q+ +  G
Sbjct: 1  MNKQDLIGAVAESSGLSKSDASKAVEGVFDAITGALKKGDEVRLVGFGTFSVSQRKASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I       FKA   LK  + 
Sbjct: 61 RNPRTGETMTIKASAQPKFKAGKGLKDSVN 90


>gi|291518256|emb|CBK73477.1| Bacterial nucleoid DNA-binding protein [Butyrivibrio fibrisolvens
          16/4]
          Length = 90

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+ +  +S+KD+   V      + +   +GE I++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAIASKANISKKDAEASVKAFTEVVAEELKKGEKIQLVGFGTFEVSKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E+KI   +   FKA   LK  I 
Sbjct: 61 RNPQTGAEMKIPASKAPKFKAGKALKDSIN 90


>gi|114777720|ref|ZP_01452680.1| DNA-binding protein HU [Mariprofundus ferrooxydans PV-1]
 gi|114551936|gb|EAU54470.1| DNA-binding protein HU [Mariprofundus ferrooxydans PV-1]
          Length = 94

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 58/93 (62%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV+ I+++  G++R+++   V T+F+ I D+   G+ +++  F +F  K + +R+
Sbjct: 1  MTKSELVEIIAEQQAGITRREAEVVVNTIFSVIGDALAVGDHVELRGFGSFTTKARQARI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V +  + +  FK    L++R+ + 
Sbjct: 61 GRNPKTGEAVSVPAKSIPHFKPGKDLRERVDNA 93


>gi|77362371|ref|YP_341945.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas
          haloplanktis TAC125]
 gi|76877282|emb|CAI89499.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas
          haloplanktis TAC125]
          Length = 91

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I+ +  +S+  +TR +      +  S   G+++ +  F TF VK++ +R G
Sbjct: 1  MNKAQLVEKIATDAEISKAAATRALDAFTGAVTSSLKEGDSVALVGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I    +  FKA   LK ++ 
Sbjct: 61 RNPQTGAEIQIAAATIPSFKAGKGLKDQVN 90


>gi|54294745|ref|YP_127160.1| hypothetical protein lpl1822 [Legionella pneumophila str. Lens]
 gi|54297775|ref|YP_124144.1| hypothetical protein lpp1826 [Legionella pneumophila str. Paris]
 gi|148359403|ref|YP_001250610.1| hypothetical protein LPC_1303 [Legionella pneumophila str. Corby]
 gi|296107449|ref|YP_003619149.1| hypothetical protein lpa_02684 [Legionella pneumophila 2300/99
          Alcoy]
 gi|53751560|emb|CAH12978.1| hypothetical protein lpp1826 [Legionella pneumophila str. Paris]
 gi|53754577|emb|CAH16061.1| hypothetical protein lpl1822 [Legionella pneumophila str. Lens]
 gi|148281176|gb|ABQ55264.1| hypothetical protein LPC_1303 [Legionella pneumophila str. Corby]
 gi|295649350|gb|ADG25197.1| hypothetical protein lpa_02684 [Legionella pneumophila 2300/99
          Alcoy]
 gi|307610561|emb|CBX00149.1| hypothetical protein LPW_18941 [Legionella pneumophila 130b]
          Length = 92

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 50/92 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV +I+   GL++ D++R + T    + D   +G+ + I  F +F    + +R G
Sbjct: 1  MNKSELVDAIASGSGLTKADASRVLETFMATVTDVLKKGDQVVIPGFGSFSTGNRSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN QT + ++I   RV  FKA   LK+ +   
Sbjct: 61 RNPQTGKTIQIKASRVAKFKAGKNLKEAVQQA 92


>gi|330831142|ref|YP_004394094.1| integration host factor subunit beta [Aeromonas veronii B565]
 gi|328806278|gb|AEB51477.1| Integration host factor, beta subunit [Aeromonas veronii B565]
          Length = 90

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV +I+ +  LS+  +   +  + N I  S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVTHRAGRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I    V  F A   LK  + 
Sbjct: 61 RNPQTGKEIQIAAANVPSFVAGKALKDAVK 90


>gi|260575262|ref|ZP_05843262.1| integration host factor, alpha subunit [Rhodobacter sp. SW2]
 gi|259022522|gb|EEW25818.1| integration host factor, alpha subunit [Rhodobacter sp. SW2]
          Length = 100

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/99 (46%), Positives = 65/99 (65%), Gaps = 1/99 (1%)

Query: 1  MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          MS KT+TR DL +++ +E GLSR DS + V  +   + D+ V GE +KISSF TF V+ K
Sbjct: 1  MSEKTLTRMDLSEAVFREVGLSRNDSAQLVEAVLQHMSDALVGGETVKISSFGTFSVRDK 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           +RVGRN +T  EV I PRRV+ F+ S ++K R+    +
Sbjct: 61 SARVGRNPKTGDEVPISPRRVMTFRPSHLMKDRVAAGKK 99


>gi|166033174|ref|ZP_02236003.1| hypothetical protein DORFOR_02896 [Dorea formicigenerans ATCC
          27755]
 gi|166027531|gb|EDR46288.1| hypothetical protein DORFOR_02896 [Dorea formicigenerans ATCC
          27755]
          Length = 91

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+ +  +S+KDS + +    + + +   +G  I++  F TF   ++ +R G
Sbjct: 1  MNKTELVAAIADKAEISKKDSEKALKAFVDVVTEELKKGHKIQLVGFGTFETSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T + +KI+  +   FKA   LK  + +
Sbjct: 61 RNPSTGETMKIEACKAPKFKAGKALKDAVNE 91


>gi|84683356|ref|ZP_01011259.1| integration host factor, beta subunit [Maritimibacter
          alkaliphilus HTCC2654]
 gi|84668099|gb|EAQ14566.1| integration host factor, beta subunit [Rhodobacterales bacterium
          HTCC2654]
          Length = 93

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L ++D  R V T+F EI ++  RG+ +++  F  F VKQ+ +RV
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTIFEEIIEAMARGDRVELRGFGAFSVKQRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V ++ + V  FK   +L+ R+  +
Sbjct: 61 GRNPRTGESVDVEEKHVPFFKTGKLLRDRLNGN 93


>gi|78485543|ref|YP_391468.1| integration host factor, beta subunit [Thiomicrospira crunogena
          XCL-2]
 gi|78363829|gb|ABB41794.1| integration host factor, beta subunit [Thiomicrospira crunogena
          XCL-2]
          Length = 108

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I+++    S+KD    +  + + + D+   G+ I+I  F +F +  + +R+
Sbjct: 8  MTKSELIELIARKQTQFSQKDVELAINQILDSMIDTLSEGDRIEIRGFGSFSLHHRKARL 67

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++V++  +RV  FK    L+ R+
Sbjct: 68 GRNPKTGEKVELSEKRVPHFKPGKSLRDRV 97


>gi|170718718|ref|YP_001783908.1| histone family protein DNA-binding protein [Haemophilus somnus
          2336]
 gi|168826847|gb|ACA32218.1| histone family protein DNA-binding protein [Haemophilus somnus
          2336]
          Length = 91

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+    L++K +   +      I  S   GEA+++  F TF V ++ +R G
Sbjct: 1  MNKTDLIDAIAGAAELNKKQAKAALEATLGAIAGSLKAGEAVQLIGFGTFKVNERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I   +V  F A   LK  + 
Sbjct: 61 RNPQTGAEIQIAASKVPAFVAGKALKDSVN 90


>gi|255524045|ref|ZP_05391007.1| histone family protein DNA-binding protein [Clostridium
          carboxidivorans P7]
 gi|296186901|ref|ZP_06855302.1| putative integration host factor, beta subunit [Clostridium
          carboxidivorans P7]
 gi|255512332|gb|EET88610.1| histone family protein DNA-binding protein [Clostridium
          carboxidivorans P7]
 gi|296048615|gb|EFG88048.1| putative integration host factor, beta subunit [Clostridium
          carboxidivorans P7]
          Length = 91

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 53/91 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ SI+++  L++KD    +      + ++  +G+ +++  F TF  +++ +RVG
Sbjct: 1  MNKSELIASIAEKSKLTKKDVEVVLKGFIESVEETLEKGDKVQLVGFGTFETRKRAARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T +E++I    V VFKA    K ++  
Sbjct: 61 RNPRTKEEIEIPESTVPVFKAGKEFKDKVNK 91


>gi|222148217|ref|YP_002549174.1| integration host factor subunit alpha [Agrobacterium vitis S4]
 gi|254803508|sp|B9JV88|IHFA_AGRVS RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|221735205|gb|ACM36168.1| integration host factor alpha subunit [Agrobacterium vitis S4]
          Length = 112

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/110 (46%), Positives = 76/110 (69%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +S+ ++ GLSR +S   V T+ +EIC++ VRGE +K+SSFATF V+ K  
Sbjct: 3   GKTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGEMVKLSSFATFQVRAKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111
           R+GRN +T +EV I PR+V+ FKAS++LK+RI+     RK  +      +
Sbjct: 63  RIGRNPKTGEEVPISPRKVMTFKASNVLKQRILRSHLARKAKQKPANPAA 112


>gi|85858504|ref|YP_460706.1| DNA-binding protein HU [Syntrophus aciditrophicus SB]
 gi|85721595|gb|ABC76538.1| DNA-binding protein HU [Syntrophus aciditrophicus SB]
          Length = 91

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/91 (46%), Positives = 62/91 (68%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ D+++ + ++ G S+KDS R V ++F+ I +S  RGE IKIS F  F VK+K SR G
Sbjct: 1  MTKIDIIQDVYEKLGFSKKDSARIVESVFDIIKESLGRGEKIKISGFGNFVVKEKKSRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT  E+ I  RRV+ FK+S +L+K + D
Sbjct: 61 RNPQTGDEISISARRVLTFKSSQVLRKALND 91


>gi|94499400|ref|ZP_01305937.1| integration host factor, beta subunit [Oceanobacter sp. RED65]
 gi|94428154|gb|EAT13127.1| integration host factor, beta subunit [Oceanobacter sp. RED65]
          Length = 101

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 55/96 (57%), Gaps = 1/96 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I+++   +S KD    V T+ + +  +  +GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERITEKHPEMSAKDIELAVKTILDTMSQALSQGERIEIRGFGSFSLHFRNPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T + V +  + V  FK    L++++ D + G
Sbjct: 61 GRNPKTGEAVPLKGKYVPHFKPGKELREQVNDLVNG 96


>gi|258544542|ref|ZP_05704776.1| integration host factor subunit alpha [Cardiobacterium hominis
          ATCC 15826]
 gi|258520173|gb|EEV89032.1| integration host factor subunit alpha [Cardiobacterium hominis
          ATCC 15826]
          Length = 98

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 56/95 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++D+V+SI  + G+ R D+ + V  LF E+      GEA+K+S F  F ++ K  R 
Sbjct: 2  TLTKADIVESIIAQIGIPRPDARQMVDDLFEEVRACLATGEAVKLSGFGNFELRDKKQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +E+ I  RRVV FKA   LK R+     
Sbjct: 62 GRNPKTGEEIPITARRVVSFKAGQKLKARVSGSKP 96


>gi|153854753|ref|ZP_01995987.1| hypothetical protein DORLON_01985 [Dorea longicatena DSM 13814]
 gi|149752660|gb|EDM62591.1| hypothetical protein DORLON_01985 [Dorea longicatena DSM 13814]
          Length = 91

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+ +  LS+KDS + +    + + +   +   +++  F TF V  +  R G
Sbjct: 1  MNKTELIAAIADQAELSKKDSEKALKAFIDVVTEELKKEHKVQVVGFGTFEVSMRAEREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + +KI   +   FKA   LK  I +
Sbjct: 61 RNPQTGETMKIAACKAPKFKAGKALKDAINE 91


>gi|33152141|ref|NP_873494.1| DNA-binding protein HU [Haemophilus ducreyi 35000HP]
 gi|33148363|gb|AAP95883.1| DNA-binding protein HU [Haemophilus ducreyi 35000HP]
          Length = 90

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I  +  LS+KD+   +    N I  S   G+++++  F TF V ++  R+G
Sbjct: 1  MNKTELIDAIVADTALSKKDAKAALEATLNAISGSLKNGDSVQLIGFGTFKVNERSERIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E+KI   +V  F A   LK  + 
Sbjct: 61 RNPRTGEEIKIAASKVPAFVAGKALKDLVK 90


>gi|330817268|ref|YP_004360973.1| Probable dna-binding protein hu-beta [Burkholderia gladioli BSR3]
 gi|327369661|gb|AEA61017.1| Probable dna-binding protein hu-beta [Burkholderia gladioli BSR3]
          Length = 90

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  I++E  LS+  + R +  L   +  +   G ++ ++ F TF V ++ +R G
Sbjct: 1  MNKTDLIDHIAREADLSKASAGRALDALIAGVVQALESGGSVTLAGFGTFEVGERIARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++I+  RV  F+A   LK  + 
Sbjct: 61 RNPQTGETIRIEAARVAKFRAGKALKDALN 90


>gi|152972862|ref|YP_001338008.1| transcriptional regulator HU subunit alpha [Klebsiella pneumoniae
          subsp. pneumoniae MGH 78578]
 gi|156935797|ref|YP_001439713.1| transcriptional regulator HU subunit alpha [Cronobacter sakazakii
          ATCC BAA-894]
 gi|206580695|ref|YP_002241059.1| DNA-binding protein HU, alpha subunit [Klebsiella pneumoniae 342]
 gi|238892475|ref|YP_002917209.1| transcriptional regulator HU subunit alpha [Klebsiella pneumoniae
          NTUH-K2044]
 gi|260596103|ref|YP_003208674.1| transcriptional regulator HU subunit alpha [Cronobacter
          turicensis z3032]
 gi|262043760|ref|ZP_06016863.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|288937704|ref|YP_003441763.1| histone family protein DNA-binding protein [Klebsiella variicola
          At-22]
 gi|290513212|ref|ZP_06552573.1| DNA-binding protein HU-alpha [Klebsiella sp. 1_1_55]
 gi|311281445|ref|YP_003943676.1| histone family protein DNA-binding protein [Enterobacter cloacae
          SCF1]
 gi|330005095|ref|ZP_08305105.1| DNA-binding protein HU-alpha [Klebsiella sp. MS 92-3]
 gi|150957711|gb|ABR79741.1| DNA-binding protein HU-alpha (HU-2) [Klebsiella pneumoniae subsp.
          pneumoniae MGH 78578]
 gi|156534051|gb|ABU78877.1| hypothetical protein ESA_03673 [Cronobacter sakazakii ATCC
          BAA-894]
 gi|206569753|gb|ACI11529.1| DNA-binding protein HU, alpha subunit [Klebsiella pneumoniae 342]
 gi|238544791|dbj|BAH61142.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
          pneumoniae NTUH-K2044]
 gi|259038884|gb|EEW40052.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|260215280|emb|CBA27205.1| DNA-binding protein HU-alpha [Cronobacter turicensis z3032]
 gi|288892413|gb|ADC60731.1| histone family protein DNA-binding protein [Klebsiella variicola
          At-22]
 gi|289774309|gb|EFD82316.1| DNA-binding protein HU-alpha [Klebsiella sp. 1_1_55]
 gi|308750640|gb|ADO50392.1| histone family protein DNA-binding protein [Enterobacter cloacae
          SCF1]
 gi|328536428|gb|EGF62781.1| DNA-binding protein HU-alpha [Klebsiella sp. MS 92-3]
          Length = 90

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKAQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|238785563|ref|ZP_04629544.1| DNA-binding protein HU-alpha [Yersinia bercovieri ATCC 43970]
 gi|238794946|ref|ZP_04638543.1| DNA-binding protein HU-alpha [Yersinia intermedia ATCC 29909]
 gi|238798678|ref|ZP_04642152.1| DNA-binding protein HU-alpha [Yersinia mollaretii ATCC 43969]
 gi|238713548|gb|EEQ05579.1| DNA-binding protein HU-alpha [Yersinia bercovieri ATCC 43970]
 gi|238717496|gb|EEQ09338.1| DNA-binding protein HU-alpha [Yersinia mollaretii ATCC 43969]
 gi|238725704|gb|EEQ17261.1| DNA-binding protein HU-alpha [Yersinia intermedia ATCC 29909]
          Length = 91

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+ +++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKAQAKAALESTLAAITESLKDGDPVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDSVK 90


>gi|225375853|ref|ZP_03753074.1| hypothetical protein ROSEINA2194_01485 [Roseburia inulinivorans
          DSM 16841]
 gi|225212288|gb|EEG94642.1| hypothetical protein ROSEINA2194_01485 [Roseburia inulinivorans
          DSM 16841]
          Length = 91

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++  LS+KD+   +    + + +   +GE I++  F TF V ++  R G
Sbjct: 1  MNKAELVAAMAEKAELSKKDAEAALKAFTDVVAEELKKGEKIQLVGFGTFEVSERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN Q+ +E+ I   +   FKA   LK  + 
Sbjct: 61 RNPQSGKEMVIPASKAPKFKAGKALKDMVN 90


>gi|304399314|ref|ZP_07381179.1| histone family protein DNA-binding protein [Pantoea sp. aB]
 gi|308188920|ref|YP_003933051.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea
          vagans C9-1]
 gi|304353170|gb|EFM17552.1| histone family protein DNA-binding protein [Pantoea sp. aB]
 gi|308059430|gb|ADO11602.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea
          vagans C9-1]
          Length = 90

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIAEKADLSKTQAKAALESTLAAITESLKDGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|291615778|ref|YP_003518520.1| HupA [Pantoea ananatis LMG 20103]
 gi|329296840|ref|ZP_08254176.1| transcriptional regulator HU subunit alpha [Plautia stali
          symbiont]
 gi|291150808|gb|ADD75392.1| HupA [Pantoea ananatis LMG 20103]
 gi|327396044|dbj|BAK13466.1| DNA-binding protein HU-alpha HupA [Pantoea ananatis AJ13355]
          Length = 90

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIAEKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|261344010|ref|ZP_05971655.1| integration host factor, alpha subunit [Providencia rustigianii
          DSM 4541]
 gi|282568401|gb|EFB73936.1| integration host factor, alpha subunit [Providencia rustigianii
          DSM 4541]
          Length = 98

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 54/95 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ G+S++D+   V T F E+  S   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEKLFEKLGVSKRDAKDLVETFFEEVRLSLENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +++ I  RRVV F+    LK R+     
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKNRVEKATP 96


>gi|190891218|ref|YP_001977760.1| integration host factor protein, alpha subunit [Rhizobium etli CIAT
           652]
 gi|218515089|ref|ZP_03511929.1| integration host factor subunit alpha [Rhizobium etli 8C-3]
 gi|226709742|sp|B3PVE1|IHFA_RHIE6 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|190696497|gb|ACE90582.1| integration host factor protein, alpha subunit [Rhizobium etli CIAT
           652]
          Length = 112

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/102 (50%), Positives = 73/102 (71%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +S+ ++ GLSR +S   V T+ +EIC++ VRGE +K+SSFATF V+ K  
Sbjct: 3   GKTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           R+GRN +T +EV I PRRV+ FKAS++LK RI+     RK  
Sbjct: 63  RIGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVSRKVK 104


>gi|22124414|ref|NP_667837.1| transcriptional regulator HU subunit alpha [Yersinia pestis KIM
          10]
 gi|45442848|ref|NP_994387.1| transcriptional regulator HU subunit alpha [Yersinia pestis
          biovar Microtus str. 91001]
 gi|51594652|ref|YP_068843.1| transcriptional regulator HU subunit alpha [Yersinia
          pseudotuberculosis IP 32953]
 gi|108809595|ref|YP_653511.1| transcriptional regulator HU subunit alpha [Yersinia pestis
          Antiqua]
 gi|108810400|ref|YP_646167.1| transcriptional regulator HU subunit alpha [Yersinia pestis
          Nepal516]
 gi|145600976|ref|YP_001165052.1| transcriptional regulator HU subunit alpha [Yersinia pestis
          Pestoides F]
 gi|153947801|ref|YP_001402797.1| transcriptional regulator HU subunit alpha [Yersinia
          pseudotuberculosis IP 31758]
 gi|153997235|ref|ZP_02022342.1| DNA-binding protein HU-alpha [Yersinia pestis CA88-4125]
 gi|162418414|ref|YP_001605067.1| transcriptional regulator HU subunit alpha [Yersinia pestis
          Angola]
 gi|165928324|ref|ZP_02224156.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis
          str. F1991016]
 gi|165938152|ref|ZP_02226711.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis
          str. IP275]
 gi|166012045|ref|ZP_02232943.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166214410|ref|ZP_02240445.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|167402421|ref|ZP_02307881.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str.
          UG05-0454]
 gi|167422943|ref|ZP_02314696.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis
          str. MG05-1020]
 gi|167426821|ref|ZP_02318574.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Mediaevalis
          str. K1973002]
 gi|170022612|ref|YP_001719117.1| transcriptional regulator HU subunit alpha [Yersinia
          pseudotuberculosis YPIII]
 gi|186893654|ref|YP_001870766.1| transcriptional regulator HU subunit alpha [Yersinia
          pseudotuberculosis PB1/+]
 gi|218930736|ref|YP_002348611.1| transcriptional regulator HU subunit alpha [Yersinia pestis CO92]
 gi|229837478|ref|ZP_04457640.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Yersinia pestis Pestoides A]
 gi|229839413|ref|ZP_04459572.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229899975|ref|ZP_04515115.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Yersinia pestis biovar Orientalis str. India 195]
 gi|229900576|ref|ZP_04515702.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Yersinia pestis Nepal516]
 gi|270488931|ref|ZP_06206005.1| DNA-binding protein HU [Yersinia pestis KIM D27]
 gi|21957198|gb|AAM84088.1|AE013651_1 DNA-binding protein HU-alpha (HU-2) [Yersinia pestis KIM 10]
 gi|45437714|gb|AAS63264.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Microtus
          str. 91001]
 gi|51587934|emb|CAH19537.1| DNA-binding protein HU-alpha [Yersinia pseudotuberculosis IP
          32953]
 gi|108774048|gb|ABG16567.1| bacterial nucleoid protein HU alpha subunit [Yersinia pestis
          Nepal516]
 gi|108781508|gb|ABG15566.1| bacterial nucleoid protein HU alpha subunit [Yersinia pestis
          Antiqua]
 gi|115349347|emb|CAL22318.1| DNA-binding protein HU-alpha [Yersinia pestis CO92]
 gi|145212672|gb|ABP42079.1| bacterial nucleoid protein HU alpha subunit [Yersinia pestis
          Pestoides F]
 gi|149289343|gb|EDM39422.1| DNA-binding protein HU-alpha [Yersinia pestis CA88-4125]
 gi|152959296|gb|ABS46757.1| DNA-binding protein HU-alpha [Yersinia pseudotuberculosis IP
          31758]
 gi|162351229|gb|ABX85177.1| DNA-binding protein HU-alpha [Yersinia pestis Angola]
 gi|165913813|gb|EDR32431.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis
          str. IP275]
 gi|165919663|gb|EDR36996.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis
          str. F1991016]
 gi|165989040|gb|EDR41341.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166204414|gb|EDR48894.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|166957154|gb|EDR55175.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis
          str. MG05-1020]
 gi|167048201|gb|EDR59609.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str.
          UG05-0454]
 gi|167054203|gb|EDR64028.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Mediaevalis
          str. K1973002]
 gi|169749146|gb|ACA66664.1| histone family protein DNA-binding protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186696680|gb|ACC87309.1| histone family protein DNA-binding protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|229682396|gb|EEO78486.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Yersinia pestis Nepal516]
 gi|229686960|gb|EEO79036.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Yersinia pestis biovar Orientalis str. India 195]
 gi|229695779|gb|EEO85826.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229704166|gb|EEO91177.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Yersinia pestis Pestoides A]
 gi|270337435|gb|EFA48212.1| DNA-binding protein HU [Yersinia pestis KIM D27]
 gi|320013669|gb|ADV97240.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 91

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+ +++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKVQAKAALESTLAAITESLKEGDPVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|332535436|ref|ZP_08411223.1| DNA-binding protein HU-beta [Pseudoalteromonas haloplanktis
          ANT/505]
 gi|332035160|gb|EGI71672.1| DNA-binding protein HU-beta [Pseudoalteromonas haloplanktis
          ANT/505]
          Length = 91

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I+ +  +S+  +TR +      +  S   G+++ +  F TF VK++ +R G
Sbjct: 1  MNKAQLVEKIATDAEISKAAATRALDAFTGAVTSSLKEGDSVALVGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I    +  FKA   LK ++ 
Sbjct: 61 RNPQTGAEIQIAAATIPSFKAGKGLKDQVN 90


>gi|153833369|ref|ZP_01986036.1| integration host factor, beta subunit [Vibrio harveyi HY01]
 gi|156975132|ref|YP_001446039.1| integration host factor subunit beta [Vibrio harveyi ATCC
          BAA-1116]
 gi|166975895|sp|A7MUP0|IHFB_VIBHB RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|148870378|gb|EDL69304.1| integration host factor, beta subunit [Vibrio harveyi HY01]
 gi|156526726|gb|ABU71812.1| hypothetical protein VIBHAR_02859 [Vibrio harveyi ATCC BAA-1116]
          Length = 94

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + +++  LS K+    V  +   +  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLCAEQTHLSAKEVEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L++R+ 
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91


>gi|71282434|ref|YP_268603.1| HU family DNA-binding protein [Colwellia psychrerythraea 34H]
 gi|71148174|gb|AAZ28647.1| DNA-binding protein, HU family [Colwellia psychrerythraea 34H]
          Length = 91

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV+ I++   +S+  + R + +L   +      G  + +  F T+ V  + +R G
Sbjct: 1  MNKSELVEKIAEGADISKASAGRALDSLIGSVTTELANGGDVALVGFGTYKVNDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I   +V  FKA   LK  + 
Sbjct: 61 RNPQTGAEIQISAAKVPAFKAGKALKDAVN 90


>gi|168187043|ref|ZP_02621678.1| DNA-binding protein HU [Clostridium botulinum C str. Eklund]
 gi|169295104|gb|EDS77237.1| DNA-binding protein HU [Clostridium botulinum C str. Eklund]
          Length = 92

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ S++++  L++KD    +      + ++ + GE +++  F TF  +++  R G
Sbjct: 1  MNKSELITSMAEKSQLTKKDVEVALKAFIESVEEALMDGEKVQLVGFGTFETRERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T +E+ I    V VFKA    K+ + +
Sbjct: 61 RNPRTKEEITIPAATVPVFKAGKEFKEIVNN 91


>gi|229170534|ref|ZP_04298182.1| DNA-binding protein HU [Bacillus cereus AH621]
 gi|228612883|gb|EEK70060.1| DNA-binding protein HU [Bacillus cereus AH621]
          Length = 93

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 53/92 (57%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +++L K ++++  L++KD+      + N I ++    E ++I  F TF V+++ +R
Sbjct: 2  QKMNKAELTKMVAEKAELTQKDAAAATQAVLNAITNALANEEKVQILGFGTFEVRERSAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E++I   +   FKA   LK+ + 
Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93


>gi|171057653|ref|YP_001790002.1| integration host factor subunit beta [Leptothrix cholodnii SP-6]
 gi|170775098|gb|ACB33237.1| integration host factor, beta subunit [Leptothrix cholodnii SP-6]
          Length = 112

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDLV  +++    L+ +D+   V T+ + + D+  RG  I+I  F +F + ++  RV
Sbjct: 1  MTRSDLVALLAERFSQLTHRDAEFAVKTMLDAMSDALARGHRIEIRGFGSFAINRRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V I  + V  FK    L++ +
Sbjct: 61 GRNPRSGEQVVIPEKLVPHFKPGKALREAV 90


>gi|148556459|ref|YP_001264041.1| integration host factor subunit alpha [Sphingomonas wittichii
          RW1]
 gi|166918531|sp|A5VC87|IHFA_SPHWW RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|148501649|gb|ABQ69903.1| integration host factor, alpha subunit [Sphingomonas wittichii
          RW1]
          Length = 100

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/93 (45%), Positives = 62/93 (66%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+DL + + +E GLSR DS   V  +   +C +  RGE +KIS F +F +++KG R+
Sbjct: 7  TLTRADLSEEVHREIGLSRADSAAVVEQVLEHMCLALARGENVKISGFGSFILREKGQRI 66

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T  EV I PRRV+ F+AS +L+ RI+  
Sbjct: 67 GRNPKTGVEVPIAPRRVLTFRASQMLRDRIVSG 99


>gi|260768939|ref|ZP_05877873.1| integration host factor beta subunit [Vibrio furnissii CIP
          102972]
 gi|260616969|gb|EEX42154.1| integration host factor beta subunit [Vibrio furnissii CIP
          102972]
 gi|315180635|gb|ADT87549.1| integration host factor subunit beta [Vibrio furnissii NCTC
          11218]
          Length = 94

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 56/94 (59%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + +++  LS K+    V  +   + ++   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMANTLEAGDRIEIRGFGSFSLHYREPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T ++V+++ + V  FK    L++R+ +++
Sbjct: 61 GRNPKTGEKVELEGKFVPHFKPGKELRERVNENI 94


>gi|254429814|ref|ZP_05043521.1| integration host factor, alpha subunit [Alcanivorax sp. DG881]
 gi|196195983|gb|EDX90942.1| integration host factor, alpha subunit [Alcanivorax sp. DG881]
          Length = 100

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 52/91 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + + +E GL+++++   V   F EI  S      +K+S F  F ++ K  R 
Sbjct: 3  ALTKADMAERLFEELGLNKREAKEMVEMFFEEIRHSLENNIPVKLSGFGNFDLRDKSERP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  RRVV F+    LK+R+ 
Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKQRVE 93


>gi|86357171|ref|YP_469063.1| integration host factor subunit alpha [Rhizobium etli CFN 42]
 gi|123738362|sp|Q2KA00|IHFA_RHIEC RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|86281273|gb|ABC90336.1| integration host factor alpha-subunit protein [Rhizobium etli CFN
           42]
          Length = 112

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/102 (50%), Positives = 73/102 (71%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +S+ ++ GLSR +S   V T+ +EIC++ VRGE +K+SSFATF V+ K  
Sbjct: 3   GKTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           R+GRN +T +EV I PRRV+ FKAS++LK RI+     RK  
Sbjct: 63  RIGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVTRKVK 104


>gi|322418662|ref|YP_004197885.1| histone family protein DNA-binding protein [Geobacter sp. M18]
 gi|320125049|gb|ADW12609.1| histone family protein DNA-binding protein [Geobacter sp. M18]
          Length = 91

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++E  L++ D+ + +T + + + D    G+ + +  F TF V ++ +R G
Sbjct: 1  MNKAELVSAIAEEAQLTKVDADKALTGILDALTDCLAAGDKVTLVGFGTFSVAERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +N QT ++++I       FK  + LK  I  
Sbjct: 61 QNPQTGKKIEIAASTAPKFKPGNTLKALING 91


>gi|148552974|ref|YP_001260556.1| histone family protein DNA-binding protein [Sphingomonas
          wittichii RW1]
 gi|148498164|gb|ABQ66418.1| histone family protein DNA-binding protein [Sphingomonas
          wittichii RW1]
          Length = 90

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ ++++  G+++ D+++ V  +F+ I     +G+ +++  F TF V ++ +  G
Sbjct: 1  MNKQELIGTVAEATGMTKNDASKAVEAVFDSITTQLKKGDEVRLVGFGTFSVTKRKASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + +KI       FK    LK  + 
Sbjct: 61 RNPRTGEPMKISASSQPKFKPGKGLKDAVN 90


>gi|307822734|ref|ZP_07652965.1| integration host factor, alpha subunit [Methylobacter
          tundripaludum SV96]
 gi|307736338|gb|EFO07184.1| integration host factor, alpha subunit [Methylobacter
          tundripaludum SV96]
          Length = 98

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 53/91 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D  + +  E GL+++++   V   F EI  S   GE +KIS F  F ++ K SR 
Sbjct: 2  ALTKADFAERLFDELGLNKREAKDMVEMFFEEIKGSLEHGEQVKISGFGKFELRDKSSRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  RRVV F++   LK R+ 
Sbjct: 62 GRNPKTGEEIPITARRVVTFRSGQKLKARVE 92


>gi|123440689|ref|YP_001004681.1| transcriptional regulator HU subunit alpha [Yersinia
          enterocolitica subsp. enterocolitica 8081]
 gi|332159925|ref|YP_004296502.1| transcriptional regulator HU subunit alpha [Yersinia
          enterocolitica subsp. palearctica 105.5R(r)]
 gi|122087650|emb|CAL10432.1| DNA-binding protein HU-alpha [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|318607524|emb|CBY29022.1| DNA-binding protein HU-alpha [Yersinia enterocolitica subsp.
          palearctica Y11]
 gi|325664155|gb|ADZ40799.1| transcriptional regulator HU subunit alpha [Yersinia
          enterocolitica subsp. palearctica 105.5R(r)]
 gi|330863075|emb|CBX73206.1| DNA-binding protein HU-alpha [Yersinia enterocolitica W22703]
          Length = 91

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKAQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|86146200|ref|ZP_01064525.1| DNA-binding protein HU-beta [Vibrio sp. MED222]
 gi|218709724|ref|YP_002417345.1| DNA-binding protein HU-beta [Vibrio splendidus LGP32]
 gi|85835911|gb|EAQ54044.1| DNA-binding protein HU-beta [Vibrio sp. MED222]
 gi|218322743|emb|CAV18920.1| DNA-binding protein HU-beta [Vibrio splendidus LGP32]
          Length = 91

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 45/87 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S LV+ I+    +S++ +   +  L   I  +   G+ + I  F +F V  + +R G
Sbjct: 1  MNKSQLVEHIATSADISKEQAGTALNALVEGISTTLANGDDVSILGFGSFKVNSRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T +E++I   +   FKA   LK+
Sbjct: 61 RNPRTGEEIQISASKTPAFKAGKALKE 87


>gi|260776374|ref|ZP_05885269.1| integration host factor beta subunit [Vibrio coralliilyticus ATCC
          BAA-450]
 gi|260607597|gb|EEX33862.1| integration host factor beta subunit [Vibrio coralliilyticus ATCC
          BAA-450]
          Length = 93

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + +++  LS K+    V  +   +  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLETGDRIEIRGFGSFSLHYREPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T ++V+++ + V  FK    L++R+ 
Sbjct: 61 GRNPKTGEKVELEGKYVPHFKPGKELRERVN 91


>gi|300714862|ref|YP_003739665.1| Bacterial nucleoid protein HU alpha subunit [Erwinia billingiae
          Eb661]
 gi|299060698|emb|CAX57805.1| Bacterial nucleoid protein HU alpha subunit [Erwinia billingiae
          Eb661]
          Length = 91

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|114775527|ref|ZP_01451095.1| histone-like protein [Mariprofundus ferrooxydans PV-1]
 gi|114553638|gb|EAU56019.1| histone-like protein [Mariprofundus ferrooxydans PV-1]
          Length = 90

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 41/90 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  ++   G+S+  +   V  + + I  S   G ++ +  F TF V  + +R  
Sbjct: 1  MNKTDLIDHVASSAGMSKTAAGDAVDAVLSGITASLSGGGSVSLVGFGTFSVTARAARTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + +       FK    LK  + 
Sbjct: 61 RNPRTGEAIAVAASNAPKFKPGKALKDAVN 90


>gi|28898803|ref|NP_798408.1| integration host factor subunit beta [Vibrio parahaemolyticus
          RIMD 2210633]
 gi|260880823|ref|ZP_05893178.1| integration host factor, beta subunit [Vibrio parahaemolyticus
          AN-5034]
 gi|33301263|sp|Q87N46|IHFB_VIBPA RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|28807022|dbj|BAC60292.1| integration host factor, beta subunit [Vibrio parahaemolyticus
          RIMD 2210633]
 gi|308093630|gb|EFO43325.1| integration host factor, beta subunit [Vibrio parahaemolyticus
          AN-5034]
 gi|328474638|gb|EGF45443.1| integration host factor subunit beta [Vibrio parahaemolyticus
          10329]
          Length = 93

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + +++  LS K+    V  +   +  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLCAEQTHLSAKEVEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L++R+ 
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91


>gi|293394036|ref|ZP_06638340.1| DNA-binding protein HU-beta [Serratia odorifera DSM 4582]
 gi|291423476|gb|EFE96701.1| DNA-binding protein HU-beta [Serratia odorifera DSM 4582]
          Length = 90

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKAQAKLALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|254520528|ref|ZP_05132584.1| histone family protein DNA-binding protein [Clostridium sp.
          7_2_43FAA]
 gi|226914277|gb|EEH99478.1| histone family protein DNA-binding protein [Clostridium sp.
          7_2_43FAA]
          Length = 91

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 53/91 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S+S++  L++KD+   + +    + ++  +GE +++  F TF  +++ +R G
Sbjct: 1  MNKAELITSMSEKSKLTKKDAELALKSFIESVEEALEKGEKVQLVGFGTFETRERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + + I    V VFKA    K+++  
Sbjct: 61 RNPRTKETINIPASTVPVFKAGKEFKEKVNK 91


>gi|167747374|ref|ZP_02419501.1| hypothetical protein ANACAC_02093 [Anaerostipes caccae DSM 14662]
 gi|317471104|ref|ZP_07930476.1| DNA-binding protein [Anaerostipes sp. 3_2_56FAA]
 gi|167653352|gb|EDR97481.1| hypothetical protein ANACAC_02093 [Anaerostipes caccae DSM 14662]
 gi|316901418|gb|EFV23360.1| DNA-binding protein [Anaerostipes sp. 3_2_56FAA]
          Length = 92

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+ +  LS+KD+ + +    + I +   +GE I++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAIASKTELSKKDAEKALKAFTDVIAEELKKGEKIQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN ++ + + I   +   FKA   LK  + +
Sbjct: 61 RNPRSGEVMNIPASKAPKFKAGKALKDIVNE 91


>gi|90424175|ref|YP_532545.1| integration host factor subunit alpha [Rhodopseudomonas palustris
           BisB18]
 gi|123089633|sp|Q214G0|IHFA_RHOPB RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|90106189|gb|ABD88226.1| integration host factor, alpha subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 108

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/104 (46%), Positives = 69/104 (66%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR DL +++ ++ GLSR +S+ FV  +  EI D   +GE +K+SSF +F V++KG 
Sbjct: 5   GKTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQ 64

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           R+GRN +T  EV I PRRV+VFK S+ILK+RI  +        D
Sbjct: 65  RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINANGAAAPTKTD 108


>gi|332186955|ref|ZP_08388696.1| integration host factor, alpha subunit [Sphingomonas sp. S17]
 gi|332012965|gb|EGI55029.1| integration host factor, alpha subunit [Sphingomonas sp. S17]
          Length = 99

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 64/90 (71%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+DL +S+ +E GLSR DS + V  +  E+CD+  RGE +KIS F TF ++ KG RV
Sbjct: 6  TLTRADLAESLHQEVGLSRSDSAQVVEQILVEMCDALSRGENVKISGFGTFVLRDKGERV 65

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  EV I PRRV+ F+AS +++ RI
Sbjct: 66 GRNPKTGVEVPIAPRRVLTFRASQMMRDRI 95


>gi|254000458|ref|YP_003052521.1| histone family protein DNA-binding protein [Methylovorus sp.
          SIP3-4]
 gi|313202418|ref|YP_004041076.1| histone family protein DNA-binding protein [Methylovorus sp.
          MP688]
 gi|253987137|gb|ACT51994.1| histone family protein DNA-binding protein [Methylovorus sp.
          SIP3-4]
 gi|312441734|gb|ADQ85840.1| histone family protein DNA-binding protein [Methylovorus sp.
          MP688]
          Length = 90

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L++ I+   G+S+  + + +    + +  +  +G+++ +  F TF V ++ +R G
Sbjct: 1  MNKQELIEEIATSAGISKAAAGKVIDAFTSSVTGALKKGDSVTLIGFGTFAVSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI  R+   F+A   LK  + 
Sbjct: 61 RNPQTGKEIKIAARKAPAFRAGKALKDALN 90


>gi|238018754|ref|ZP_04599180.1| hypothetical protein VEIDISOL_00612 [Veillonella dispar ATCC
          17748]
 gi|237864520|gb|EEP65810.1| hypothetical protein VEIDISOL_00612 [Veillonella dispar ATCC
          17748]
          Length = 99

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  L++KD+ + V  +F+ + +    G  +++  F TF V+++ +R G
Sbjct: 1  MNKTELIASVAQKTELTKKDAEKAVKAVFDTVAEELAAGGKVQVIGFGTFEVRERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN Q  + + I   +   FKA   LK+++ 
Sbjct: 61 RNPQNGKTITIAASKSPAFKAGKGLKEQVN 90


>gi|218710036|ref|YP_002417657.1| integration host factor subunit beta [Vibrio splendidus LGP32]
 gi|254803543|sp|B7VH32|IHFB_VIBSL RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|218323055|emb|CAV19232.1| Integration host factor beta-subunit (IHF-beta) [Vibrio
          splendidus LGP32]
          Length = 94

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + +++  LS K+    V  +   +  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T  +V+++ + V  FK    L++R+   +
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVNSGL 94


>gi|269798417|ref|YP_003312317.1| histone family protein DNA-binding protein [Veillonella parvula
          DSM 2008]
 gi|282850654|ref|ZP_06260033.1| DNA-binding protein HU [Veillonella parvula ATCC 17745]
 gi|294792285|ref|ZP_06757433.1| DNA-binding protein HU [Veillonella sp. 6_1_27]
 gi|294794144|ref|ZP_06759281.1| DNA-binding protein HU [Veillonella sp. 3_1_44]
 gi|269095046|gb|ACZ25037.1| histone family protein DNA-binding protein [Veillonella parvula
          DSM 2008]
 gi|282580147|gb|EFB85551.1| DNA-binding protein HU [Veillonella parvula ATCC 17745]
 gi|294455714|gb|EFG24086.1| DNA-binding protein HU [Veillonella sp. 3_1_44]
 gi|294457515|gb|EFG25877.1| DNA-binding protein HU [Veillonella sp. 6_1_27]
          Length = 99

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  L++KD+ + V  +F+ +      G  +++  F TF V+++ +R G
Sbjct: 1  MNKTELIASVAQKTELTKKDAEKAVKAVFDTVAQELAAGGKVQVIGFGTFEVRERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN Q  + + I   +   FKA   LK+++ 
Sbjct: 61 RNPQNGKTITIAASKSPAFKAGKGLKEQVN 90


>gi|119774364|ref|YP_927104.1| HU family DNA-binding protein [Shewanella amazonensis SB2B]
 gi|119766864|gb|ABL99434.1| DNA-binding protein, HU family [Shewanella amazonensis SB2B]
          Length = 90

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + +    + +    G  I +  F TF V+++  R G
Sbjct: 1  MNKSELIEKIASGADISKAAAGRALDSFIAAVTEGLKDGGKISLVGFGTFEVRERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN Q+ +E+KI   ++  FKA   LK  + 
Sbjct: 61 RNPQSGKEIKIPAAKIPAFKAGKALKDAVN 90


>gi|182419997|ref|ZP_02951231.1| DNA-binding protein HU 1 [Clostridium butyricum 5521]
 gi|237669484|ref|ZP_04529464.1| DNA-binding protein HU [Clostridium butyricum E4 str. BoNT E
          BL5262]
 gi|182376034|gb|EDT73621.1| DNA-binding protein HU 1 [Clostridium butyricum 5521]
 gi|237654928|gb|EEP52488.1| DNA-binding protein HU [Clostridium butyricum E4 str. BoNT E
          BL5262]
          Length = 91

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  L++KD+   + +    + ++   GE +++  F TF  +++ +R G
Sbjct: 1  MNKAELITSMAEKSKLTKKDAELALKSFIESVEEALENGEKVQLVGFGTFETRERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + + I    V VFKA    K ++  
Sbjct: 61 RNPRTKEVINIPATTVPVFKAGKEFKDKVNK 91


>gi|303245326|ref|ZP_07331610.1| histone family protein DNA-binding protein [Desulfovibrio
          fructosovorans JJ]
 gi|302493175|gb|EFL53037.1| histone family protein DNA-binding protein [Desulfovibrio
          fructosovorans JJ]
          Length = 90

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  I+++ GL++ ++ R +      I  + V    I ++ F TF V ++ +R G
Sbjct: 1  MTKADLVGKIAEKTGLTKANAERALNAFIEAIEATLVGEGKITLTGFGTFMVDERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  E+ I   +VV F+   +LK  I 
Sbjct: 61 RNPRTGAEINIPASKVVKFRPGKLLKDAIQ 90


>gi|77163719|ref|YP_342244.1| integration host factor, beta subunit [Nitrosococcus oceani ATCC
           19707]
 gi|76882033|gb|ABA56714.1| Integration host factor, beta subunit [Nitrosococcus oceani ATCC
           19707]
          Length = 113

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5   ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L++ ++ ++  LS +D    V  L   +  +  +GE I+I  F +F +  +  R 
Sbjct: 18  MTKSELIERLAQRQALLSYRDVELAVKMLLEVMSQALAQGERIEIRGFGSFSLHYRPPRS 77

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN +T   V +  + V  FK    L++R+
Sbjct: 78  GRNPKTGDAVPLSSKYVPHFKPGKELRERV 107


>gi|282600358|ref|ZP_05974005.2| DNA-binding protein HU-beta [Providencia rustigianii DSM 4541]
 gi|282565675|gb|EFB71210.1| DNA-binding protein HU-beta [Providencia rustigianii DSM 4541]
          Length = 96

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L++ ++ E  +S+  + R V      +  S  +G+ + +  F TF V+++ +R+G
Sbjct: 6  VNKSQLIEKVASEANISKAAAGRVVDAFVASVTGSLKKGDDVTLVGFGTFSVRKRAARIG 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F+A   LK  + 
Sbjct: 66 RNPQTGKEIKIAAATVPAFRAGKGLKDAVN 95


>gi|183598822|ref|ZP_02960315.1| hypothetical protein PROSTU_02254 [Providencia stuartii ATCC
          25827]
 gi|188021030|gb|EDU59070.1| hypothetical protein PROSTU_02254 [Providencia stuartii ATCC
          25827]
          Length = 98

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 55/95 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ +++ ++ G+S++D+   V + F E+  S   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSENLFEKLGVSKRDAKDLVESFFEEVRLSLENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +++ I  RRVV F+    LK R+     
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEKATP 96


>gi|322834808|ref|YP_004214835.1| histone family protein DNA-binding protein [Rahnella sp. Y9602]
 gi|321170009|gb|ADW75708.1| histone family protein DNA-binding protein [Rahnella sp. Y9602]
          Length = 90

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +  + I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKAQAKVALESTLSAITESLKEGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|15640302|ref|NP_229929.1| DNA-binding protein HU [Vibrio cholerae O1 biovar El Tor str.
          N16961]
 gi|121586341|ref|ZP_01676130.1| DNA-binding protein HU [Vibrio cholerae 2740-80]
 gi|121727076|ref|ZP_01680267.1| DNA-binding protein HU [Vibrio cholerae V52]
 gi|147674530|ref|YP_001218528.1| DNA-binding protein HU [Vibrio cholerae O395]
 gi|153801528|ref|ZP_01956114.1| DNA-binding protein HU [Vibrio cholerae MZO-3]
 gi|153818506|ref|ZP_01971173.1| DNA-binding protein HU [Vibrio cholerae NCTC 8457]
 gi|153826741|ref|ZP_01979408.1| DNA-binding protein HU [Vibrio cholerae MZO-2]
 gi|153830400|ref|ZP_01983067.1| DNA-binding protein HU [Vibrio cholerae 623-39]
 gi|227080487|ref|YP_002809038.1| DNA-binding protein HU [Vibrio cholerae M66-2]
 gi|229506930|ref|ZP_04396438.1| DNA-binding protein HU-alpha [Vibrio cholerae BX 330286]
 gi|229509301|ref|ZP_04398784.1| DNA-binding protein HU-alpha [Vibrio cholerae B33]
 gi|229512729|ref|ZP_04402197.1| DNA-binding protein HU-alpha [Vibrio cholerae TMA 21]
 gi|229516247|ref|ZP_04405695.1| DNA-binding protein HU-alpha [Vibrio cholerae RC9]
 gi|229521010|ref|ZP_04410431.1| DNA-binding protein HU-alpha [Vibrio cholerae TM 11079-80]
 gi|229524780|ref|ZP_04414185.1| DNA-binding protein HU-alpha [Vibrio cholerae bv. albensis VL426]
 gi|229527230|ref|ZP_04416623.1| DNA-binding protein HU-alpha [Vibrio cholerae 12129(1)]
 gi|229606441|ref|YP_002877089.1| DNA-binding protein HU-alpha [Vibrio cholerae MJ-1236]
 gi|254225659|ref|ZP_04919266.1| DNA-binding protein HU [Vibrio cholerae V51]
 gi|254286255|ref|ZP_04961214.1| DNA-binding protein HU [Vibrio cholerae AM-19226]
 gi|254851407|ref|ZP_05240757.1| DNA-binding protein HU [Vibrio cholerae MO10]
 gi|255744076|ref|ZP_05418030.1| DNA-binding protein HU-alpha [Vibrio cholera CIRS 101]
 gi|262161965|ref|ZP_06030982.1| DNA-binding protein HU-alpha [Vibrio cholerae INDRE 91/1]
 gi|262168021|ref|ZP_06035720.1| DNA-binding protein HU-alpha [Vibrio cholerae RC27]
 gi|262192520|ref|ZP_06050670.1| DNA-binding protein HU-alpha [Vibrio cholerae CT 5369-93]
 gi|297581737|ref|ZP_06943659.1| DNA-binding protein HU-alpha [Vibrio cholerae RC385]
 gi|298500908|ref|ZP_07010710.1| DNA-binding protein HU [Vibrio cholerae MAK 757]
 gi|14194652|sp|Q9KV83|DBHA_VIBCH RecName: Full=DNA-binding protein HU-alpha
 gi|9654683|gb|AAF93448.1| DNA-binding protein HU [Vibrio cholerae O1 biovar El Tor str.
          N16961]
 gi|121549461|gb|EAX59489.1| DNA-binding protein HU [Vibrio cholerae 2740-80]
 gi|121630587|gb|EAX62977.1| DNA-binding protein HU [Vibrio cholerae V52]
 gi|124122933|gb|EAY41676.1| DNA-binding protein HU [Vibrio cholerae MZO-3]
 gi|125621779|gb|EAZ50106.1| DNA-binding protein HU [Vibrio cholerae V51]
 gi|126510982|gb|EAZ73576.1| DNA-binding protein HU [Vibrio cholerae NCTC 8457]
 gi|146316413|gb|ABQ20952.1| DNA-binding protein HU [Vibrio cholerae O395]
 gi|148874134|gb|EDL72269.1| DNA-binding protein HU [Vibrio cholerae 623-39]
 gi|149739456|gb|EDM53694.1| DNA-binding protein HU [Vibrio cholerae MZO-2]
 gi|150423670|gb|EDN15612.1| DNA-binding protein HU [Vibrio cholerae AM-19226]
 gi|227008375|gb|ACP04587.1| DNA-binding protein HU [Vibrio cholerae M66-2]
 gi|227012115|gb|ACP08325.1| DNA-binding protein HU [Vibrio cholerae O395]
 gi|229335238|gb|EEO00722.1| DNA-binding protein HU-alpha [Vibrio cholerae 12129(1)]
 gi|229338361|gb|EEO03378.1| DNA-binding protein HU-alpha [Vibrio cholerae bv. albensis VL426]
 gi|229341895|gb|EEO06896.1| DNA-binding protein HU-alpha [Vibrio cholerae TM 11079-80]
 gi|229346673|gb|EEO11643.1| DNA-binding protein HU-alpha [Vibrio cholerae RC9]
 gi|229350239|gb|EEO15191.1| DNA-binding protein HU-alpha [Vibrio cholerae TMA 21]
 gi|229353616|gb|EEO18553.1| DNA-binding protein HU-alpha [Vibrio cholerae B33]
 gi|229356035|gb|EEO20954.1| DNA-binding protein HU-alpha [Vibrio cholerae BX 330286]
 gi|229369096|gb|ACQ59519.1| DNA-binding protein HU-alpha [Vibrio cholerae MJ-1236]
 gi|254847112|gb|EET25526.1| DNA-binding protein HU [Vibrio cholerae MO10]
 gi|255738341|gb|EET93732.1| DNA-binding protein HU-alpha [Vibrio cholera CIRS 101]
 gi|262023554|gb|EEY42256.1| DNA-binding protein HU-alpha [Vibrio cholerae RC27]
 gi|262028343|gb|EEY46999.1| DNA-binding protein HU-alpha [Vibrio cholerae INDRE 91/1]
 gi|262031565|gb|EEY50153.1| DNA-binding protein HU-alpha [Vibrio cholerae CT 5369-93]
 gi|297534144|gb|EFH72983.1| DNA-binding protein HU-alpha [Vibrio cholerae RC385]
 gi|297540412|gb|EFH76471.1| DNA-binding protein HU [Vibrio cholerae MAK 757]
 gi|327483145|gb|AEA77552.1| DNA-binding protein HU-alpha [Vibrio cholerae LMA3894-4]
          Length = 90

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  L++  +   +      +  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKTQLIDFIAEKADLTKVQAKAALEATLGAVEGALKDGDQVQLIGFGTFKVNHRSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E+KI    V  F A   LK  I 
Sbjct: 61 RNPKTGEEIKIAAANVPAFVAGKALKDAIK 90


>gi|326385528|ref|ZP_08207167.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens
          DSM 19370]
 gi|326210067|gb|EGD60845.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens
          DSM 19370]
          Length = 90

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++   GLS+ D+T+ V  +F+ I  S  +G+ +++  F TF V ++ +  G
Sbjct: 1  MNKNDLISAVADASGLSKGDATKAVEAVFDSITGSLAKGDEVRLVGFGTFSVAKRKASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I       FKA   LK  + 
Sbjct: 61 RNPRTGEPMSIKASAQPKFKAGKGLKDAVN 90


>gi|227115024|ref|ZP_03828680.1| transcriptional regulator HU subunit alpha [Pectobacterium
          carotovorum subsp. brasiliensis PBR1692]
 gi|227328381|ref|ZP_03832405.1| transcriptional regulator HU subunit alpha [Pectobacterium
          carotovorum subsp. carotovorum WPP14]
 gi|253686628|ref|YP_003015818.1| histone family protein DNA-binding protein [Pectobacterium
          carotovorum subsp. carotovorum PC1]
 gi|261819582|ref|YP_003257688.1| transcriptional regulator HU subunit alpha [Pectobacterium
          wasabiae WPP163]
 gi|251753206|gb|ACT11282.1| histone family protein DNA-binding protein [Pectobacterium
          carotovorum subsp. carotovorum PC1]
 gi|261603595|gb|ACX86081.1| histone family protein DNA-binding protein [Pectobacterium
          wasabiae WPP163]
          Length = 90

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKAQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|193214421|ref|YP_001995620.1| histone family protein DNA-binding protein [Chloroherpeton
          thalassium ATCC 35110]
 gi|193087898|gb|ACF13173.1| histone family protein DNA-binding protein [Chloroherpeton
          thalassium ATCC 35110]
          Length = 93

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 49/92 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV+ I+ E GL++ DS R +      +  +   G+++ +  F TF V  +  R G
Sbjct: 1  MTKADLVEKIAAESGLTKADSERALNAFVKTVSAALKSGDSVTLVGFGTFTVMDRSEREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T + + I  ++V  FK  + LK  +   
Sbjct: 61 RNPKTGESMTIAAKKVPKFKPGATLKNEVAGS 92


>gi|145220403|ref|YP_001131112.1| histone family protein DNA-binding protein [Prosthecochloris
          vibrioformis DSM 265]
 gi|145206567|gb|ABP37610.1| histone family protein DNA-binding protein [Chlorobium
          phaeovibrioides DSM 265]
          Length = 91

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++++LV+ I+ +  L++ D+ + V    N +  S   G+ + +  F TF    +  R G
Sbjct: 1  MSKAELVEKIAAQANLTKVDAEKSVNAFINVVTSSLKAGDDVTLVGFGTFTTGDRAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + + I  + VV FK    LK  +  
Sbjct: 61 RNPQTGKTITIPAKTVVKFKPGKALKDEVAG 91


>gi|291561223|emb|CBL40022.1| Bacterial nucleoid DNA-binding protein [butyrate-producing
          bacterium SS3/4]
          Length = 91

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  LS+KD+ + +    + I    V+GE +++  F TF V ++ +R G
Sbjct: 1  MNKTELIAAVAEQAELSKKDAEKALKAFTDVIAAELVKGEKVQLVGFGTFEVSEREAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T +++ I   +   FKA   LK  + 
Sbjct: 61 RNPLTGEKITIAASKNPKFKAGKALKDMVN 90


>gi|225075294|ref|ZP_03718493.1| hypothetical protein NEIFLAOT_00297 [Neisseria flavescens
           NRL30031/H210]
 gi|224953469|gb|EEG34678.1| hypothetical protein NEIFLAOT_00297 [Neisseria flavescens
           NRL30031/H210]
          Length = 109

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 50/89 (56%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +S+L+++I++E G+S+  + + +    N + ++   G+ + +  F TF+V ++  R G
Sbjct: 21  VNKSELIEAIAQEAGISKSAAQKALDATTNAVTNALKNGDTVTLVGFGTFYVGERAERQG 80

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T + + I   +   F+A   LK  +
Sbjct: 81  RNPKTGEPLTIAAAKTPKFRAGKALKDAL 109


>gi|88810654|ref|ZP_01125911.1| integration host factor, beta subunit [Nitrococcus mobilis
          Nb-231]
 gi|88792284|gb|EAR23394.1| integration host factor, beta subunit [Nitrococcus mobilis
          Nb-231]
          Length = 107

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I+  +  L+ KD    V TL   + +    GE I+I  F +F +  +  R+
Sbjct: 2  MTKSELIELIAANQQHLAYKDVELAVKTLIEHMSEVLSSGERIEIRGFGSFSLHHRPPRI 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T   V +  + V  FK    +++R+   
Sbjct: 62 GRNPKTGDPVVLPGKYVPHFKPGKQMRERVNSS 94


>gi|118593738|ref|ZP_01551107.1| integration host factor subunit beta [Stappia aggregata IAM
          12614]
 gi|118433648|gb|EAV40311.1| integration host factor subunit beta [Stappia aggregata IAM
          12614]
          Length = 99

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 58/94 (61%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I+++   L ++D    V  + +E+ ++ +RG+ +++  F  F VK + +RV
Sbjct: 1  MIKSELVQHIAEQNPHLYQRDVENIVNAILDEVTEALMRGDRVELRGFGAFSVKNRPARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T Q+V++D + V  FK    ++ R+ D +
Sbjct: 61 GRNPRTGQKVEVDEKFVPFFKTGKEMRIRLNDGV 94


>gi|251791422|ref|YP_003006143.1| transcriptional regulator HU subunit alpha [Dickeya zeae Ech1591]
 gi|271498813|ref|YP_003331838.1| histone family protein DNA-binding protein [Dickeya dadantii
          Ech586]
 gi|307129002|ref|YP_003881018.1| HU, DNA-binding transcriptional regulator, subunit alpha [Dickeya
          dadantii 3937]
 gi|247540043|gb|ACT08664.1| histone family protein DNA-binding protein [Dickeya zeae Ech1591]
 gi|270342368|gb|ACZ75133.1| histone family protein DNA-binding protein [Dickeya dadantii
          Ech586]
 gi|306526531|gb|ADM96461.1| HU, DNA-binding transcriptional regulator, alpha subunit [Dickeya
          dadantii 3937]
          Length = 90

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   +      I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKTQAKAALEATLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|126669094|ref|ZP_01740025.1| integration host factor, beta subunit [Marinobacter sp. ELB17]
 gi|126626449|gb|EAZ97115.1| integration host factor, beta subunit [Marinobacter sp. ELB17]
          Length = 98

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV+ I+ K+  LS KD    V T+   +  S   G+ I+I  F +F +  + +RV
Sbjct: 1  MTKSELVELIASKQTQLSVKDVELAVKTIIEHMSRSLADGQRIEIRGFGSFSLHHRAARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN ++   V++  + V  FK    L++++ + ++
Sbjct: 61 GRNPKSGDAVQLPAKFVPHFKPGKELREQVNESLK 95


>gi|298529692|ref|ZP_07017095.1| histone family protein DNA-binding protein [Desulfonatronospira
          thiodismutans ASO3-1]
 gi|298511128|gb|EFI35031.1| histone family protein DNA-binding protein [Desulfonatronospira
          thiodismutans ASO3-1]
          Length = 90

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 55/90 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  ++++  L++ DS + +    + + D+ V+   + ++ F TF V+++ SR G
Sbjct: 1  MTKADLVSKMAEKASLTKADSEKALNAFLDSVQDTLVKEGKLTLTGFGTFAVEERKSRNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E+KI   +VV F+   ILK  + 
Sbjct: 61 RNPRTGEEIKIPACKVVKFRPGKILKDAVK 90


>gi|163851479|ref|YP_001639522.1| histone family protein DNA-binding protein [Methylobacterium
           extorquens PA1]
 gi|218530287|ref|YP_002421103.1| histone family protein DNA-binding protein [Methylobacterium
           chloromethanicum CM4]
 gi|240138644|ref|YP_002963116.1| integration host factor (IHF), DNA-binding protein, alpha subunit
           [Methylobacterium extorquens AM1]
 gi|254561242|ref|YP_003068337.1| integration host factor [Methylobacterium extorquens DM4]
 gi|226709732|sp|A9W4E5|IHFA_METEP RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|254803518|sp|B7KYG6|IHFA_METC4 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|163663084|gb|ABY30451.1| histone family protein DNA-binding protein [Methylobacterium
           extorquens PA1]
 gi|218522590|gb|ACK83175.1| histone family protein DNA-binding protein [Methylobacterium
           chloromethanicum CM4]
 gi|240008613|gb|ACS39839.1| integration host factor (IHF), DNA-binding protein, alpha subunit
           [Methylobacterium extorquens AM1]
 gi|254268520|emb|CAX24477.1| integration host factor (IHF), DNA-binding protein, alpha subunit
           [Methylobacterium extorquens DM4]
          Length = 108

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/105 (43%), Positives = 68/105 (64%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +++ ++ GLSR +S   V T+  EIC     GE +K+SSF +F V+ KG 
Sbjct: 3   GKTVTRADLSEAVYQQVGLSRAESAALVETVLAEICTCLSSGETVKLSSFGSFVVRSKGK 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           R+GRN +T  EV+I+PR+V+VFK S++LK RI           +D
Sbjct: 63  RIGRNPKTGVEVEIEPRQVMVFKPSNVLKARINGGHVNGLDMDED 107


>gi|261401368|ref|ZP_05987493.1| DNA-binding protein HU-beta [Neisseria lactamica ATCC 23970]
 gi|313668345|ref|YP_004048629.1| DNA-binding protein [Neisseria lactamica ST-640]
 gi|269208663|gb|EEZ75118.1| DNA-binding protein HU-beta [Neisseria lactamica ATCC 23970]
 gi|313005807|emb|CBN87261.1| putative DNA-binding protein [Neisseria lactamica 020-06]
          Length = 89

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I++E G+S+  + + +    N + D+  +G+ + +  F TF+V ++  R G
Sbjct: 1  MNKSELIEAIAQEAGISKAAAQKALDATTNAVTDALKKGDTVTLVGFGTFYVGERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I   +   F+A   LK  +
Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKALKDAL 89


>gi|188532334|ref|YP_001906131.1| transcriptional regulator HU subunit alpha [Erwinia tasmaniensis
          Et1/99]
 gi|292486747|ref|YP_003529617.1| DNA-binding protein HU-alpha [Erwinia amylovora CFBP1430]
 gi|188027376|emb|CAO95223.1| DNA-binding protein HU-alpha [Erwinia tasmaniensis Et1/99]
 gi|291552164|emb|CBA19201.1| DNA-binding protein HU-alpha [Erwinia amylovora CFBP1430]
 gi|312170813|emb|CBX79074.1| DNA-binding protein HU-alpha [Erwinia amylovora ATCC BAA-2158]
          Length = 90

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|27375853|ref|NP_767382.1| integration host factor subunit beta [Bradyrhizobium japonicum
          USDA 110]
 gi|81740124|sp|Q89WE8|IHFB_BRAJA RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|27348991|dbj|BAC46007.1| integration host factor beta subunit [Bradyrhizobium japonicum
          USDA 110]
          Length = 101

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  +  EI  +  RG+ +++  F  F VK + +R 
Sbjct: 1  MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVAALARGDRVELRGFGAFSVKHRPARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T   V +D + V  FK    +++R+  D  
Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRDHP 95


>gi|332527560|ref|ZP_08403607.1| putative integration host factor subunit beta (ihf-beta) protein
           [Rubrivivax benzoatilyticus JA2]
 gi|332111963|gb|EGJ11940.1| putative integration host factor subunit beta (ihf-beta) protein
           [Rubrivivax benzoatilyticus JA2]
          Length = 103

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 54/98 (55%), Gaps = 1/98 (1%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +TRSDLV  +++    L+++D+   V T+ + + D+  RG  I+I  F +F + ++  R+
Sbjct: 1   MTRSDLVARLAERFSQLTQRDTEFAVKTILDAMTDALARGHRIEIRGFGSFSINRRPPRM 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN ++ ++V I  + V  FK    L++ +       +
Sbjct: 61  GRNPRSGEQVVIPEKLVPHFKPGKALREAVDARQPADR 98


>gi|110834697|ref|YP_693556.1| integration host factor subunit alpha [Alcanivorax borkumensis
          SK2]
 gi|123345421|sp|Q0VNG4|IHFA_ALCBS RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|110647808|emb|CAL17284.1| Bacterial nucleoid DNA-binding protein [Alcanivorax borkumensis
          SK2]
          Length = 100

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 52/91 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ + + +E GL+++++   V   F EI  S      +K+S F  F ++ K  R 
Sbjct: 3  ALTKADMAERLFEELGLNKREAKEMVEMFFEEIRHSLEDNIPVKLSGFGNFDLRDKSERP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  RRVV F+    LK+R+ 
Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKQRVE 93


>gi|312898729|ref|ZP_07758118.1| putative integration host factor, beta subunit [Megasphaera
          micronuciformis F0359]
 gi|310620160|gb|EFQ03731.1| putative integration host factor, beta subunit [Megasphaera
          micronuciformis F0359]
          Length = 92

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 54/91 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  L++KD+ + V  +F  + ++  +G+ ++I  F TF V+ + +R G
Sbjct: 1  MNKTELIASVAQKSDLTKKDAEKAVKAVFEAVSETLKKGDKVQIIGFGTFEVRARKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN + N+ +KI   +   FKA   LK  +  
Sbjct: 61 RNPRNNEVIKIPASKTPAFKAGKQLKDLVNK 91


>gi|164688880|ref|ZP_02212908.1| hypothetical protein CLOBAR_02528 [Clostridium bartlettii DSM
          16795]
 gi|164602084|gb|EDQ95549.1| hypothetical protein CLOBAR_02528 [Clostridium bartlettii DSM
          16795]
          Length = 93

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 53/93 (56%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  ++++  L++K++   +  L   I ++ V G+ +++  F TF  +++ +R G
Sbjct: 1  MNKAELVSRMAEKSELTKKEAEMALNALMESIQEALVSGDKVQLVGFGTFETRERAARKG 60

Query: 65 RNLQT-NQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +   QE+ I   +  VFKA   LK+ I + 
Sbjct: 61 RNPRNPQQEIDIPASKAPVFKAGKSLKEAINEA 93


>gi|206972956|ref|ZP_03233878.1| DNA-binding protein HU 1 [Bacillus cereus AH1134]
 gi|206731840|gb|EDZ49040.1| DNA-binding protein HU 1 [Bacillus cereus AH1134]
          Length = 90

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L K ++++  L++KD+      L + I ++   GE ++I  F TF V+++ +R G
Sbjct: 1  MNKTKLTKVVAEKAELTQKDAAAATQALLDTITNALATGEKVQILGFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +   FKA   LK+ + 
Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELKEAVK 90


>gi|126736963|ref|ZP_01752698.1| integration host factor subunit beta [Roseobacter sp. SK209-2-6]
 gi|126721548|gb|EBA18251.1| integration host factor subunit beta [Roseobacter sp. SK209-2-6]
          Length = 94

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L ++D  R V T+F E+ D+  RG+ +++  F  F VKQ+ +R 
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMARGDRVELRGFGAFSVKQRDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V+++ + V  FK   +L+ R+  
Sbjct: 61 GRNPRTGETVEVEEKHVPFFKTGKLLRDRLNG 92


>gi|70731343|ref|YP_261084.1| DNA-binding protein HU subunit beta [Pseudomonas fluorescens
          Pf-5]
 gi|14194650|sp|Q9KHS6|DBHB_PSEF5 RecName: Full=DNA-binding protein HU-beta
 gi|7644386|gb|AAF65565.1|AF250140_2 histone-like protein HU [Pseudomonas fluorescens]
 gi|68345642|gb|AAY93248.1| DNA-binding protein HU, beta subunit [Pseudomonas fluorescens
          Pf-5]
          Length = 90

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    L +  + R +  +   +  +   G+++ +  F TF V  + +R+G
Sbjct: 1  MNKSELIDAIAASADLPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++I   +   FKA   LK+ + 
Sbjct: 61 RNPQTGKTLEIAAAKKPGFKAGKALKEAVN 90


>gi|148975855|ref|ZP_01812644.1| DNA-binding protein HU-beta [Vibrionales bacterium SWAT-3]
 gi|145964600|gb|EDK29853.1| DNA-binding protein HU-beta [Vibrionales bacterium SWAT-3]
          Length = 91

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 45/88 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S LV+ I+    +S++ +   +  L   I  +   G+ + I  F +F V  + +R G
Sbjct: 1  MNKSQLVEHIATSADISKEQAGNALNALVEGISTTLANGDEVAILGFGSFKVNTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN +T +E++I   +   FKA   LK+ 
Sbjct: 61 RNPRTGEEIQIAASKTPAFKAGKALKEA 88


>gi|88857365|ref|ZP_01132008.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas
          tunicata D2]
 gi|88820562|gb|EAR30374.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas
          tunicata D2]
          Length = 91

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ I+ +  +S+  ++R +      + +S   G ++ +  F TF VK + +R G
Sbjct: 1  MNKAQLVEKIATDAEISKAAASRALDAFTGAVSNSLKEGNSVALVGFGTFSVKARAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I    +  FKA   LK  + 
Sbjct: 61 RNPQTGEEIQISAANIPSFKAGKGLKDSVN 90


>gi|323144209|ref|ZP_08078844.1| DNA-binding protein HU-beta [Succinatimonas hippei YIT 12066]
 gi|322416050|gb|EFY06749.1| DNA-binding protein HU-beta [Succinatimonas hippei YIT 12066]
          Length = 92

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+K  GLS   S R +  +   + ++   G+ +++  F TF + ++ SR G
Sbjct: 1  MNKSELIEQIAKRSGLSLAGSRRALDAVLASVSEALSEGDRVQLVGFGTFKITERNSREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + ++I   +   F A + LKK +  
Sbjct: 61 RNPKTGEVIQIPASKTPSFTAGAELKKAVNG 91


>gi|268592573|ref|ZP_06126794.1| integration host factor, alpha subunit [Providencia rettgeri DSM
          1131]
 gi|291311987|gb|EFE52440.1| integration host factor, alpha subunit [Providencia rettgeri DSM
          1131]
          Length = 98

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 55/95 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ +++ ++ G+S++D+   V T F E+  S   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSENLFEKLGVSKRDAKDLVETFFEEVRLSLENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +++ I  RRVV F+    LK R+     
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEKATP 96


>gi|198284326|ref|YP_002220647.1| integration host factor subunit alpha [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218668129|ref|YP_002426987.1| integration host factor, alpha subunit [Acidithiobacillus
          ferrooxidans ATCC 23270]
 gi|198248847|gb|ACH84440.1| integration host factor, alpha subunit [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218520342|gb|ACK80928.1| integration host factor, alpha subunit [Acidithiobacillus
          ferrooxidans ATCC 23270]
          Length = 99

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 53/93 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++V  + +  GL+++++   V  LF+ I ++  +GE +K+S F  F ++ K  R 
Sbjct: 2  AVTKAEIVDMLFESMGLNKREAKGIVEALFDGIRENLAKGEEVKLSGFGNFTLRDKNPRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T  E+ I  RRVV F  S  LK  +   
Sbjct: 62 GRNPKTGVEITITARRVVTFHPSQKLKAYVNGS 94


>gi|119946824|ref|YP_944504.1| DNA-binding protein HU alpha subunit [Psychromonas ingrahamii 37]
 gi|119865428|gb|ABM04905.1| DNA-binding protein HU alpha subunit [Psychromonas ingrahamii 37]
          Length = 91

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  L++  +   +  +   + DS   GE +++  F TF V  + +R G
Sbjct: 1  MNKTQLITDIAEKAELTKVQAKAALEQMMTSVTDSLKDGEPVQLIGFGTFKVNHRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT  +++I    V  F A   LK+ +  
Sbjct: 61 RNPQTGADIQIKAANVPAFVAGKSLKEAVNK 91


>gi|92115698|ref|YP_575427.1| integration host factor subunit beta [Nitrobacter hamburgensis X14]
 gi|123083883|sp|Q1QS30|IHFB_NITHX RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|91798592|gb|ABE60967.1| integration host factor, beta subunit [Nitrobacter hamburgensis
           X14]
          Length = 101

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 54/100 (54%), Gaps = 1/100 (1%)

Query: 5   ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV+ I++    L ++D    V  + +EI  +  RG+ +++  F  F VK + +R 
Sbjct: 1   MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVTALARGDRVELRGFGAFSVKHRPARA 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           GRN +T + V +D + V  FK    +++R+  +    + +
Sbjct: 61  GRNPRTGEHVPVDQKSVPFFKTGKEMRERLNRENATSEAS 100


>gi|119503318|ref|ZP_01625402.1| DNA-binding protein HU-beta (NS1) (HU-1) [marine gamma
          proteobacterium HTCC2080]
 gi|119460964|gb|EAW42055.1| DNA-binding protein HU-beta (NS1) (HU-1) [marine gamma
          proteobacterium HTCC2080]
          Length = 91

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++E  LS+  + R +    N I  +  + + + +  F TF VK + +R G
Sbjct: 1  MNKNELVDAIAEEADLSKASAGRALDAAINAITGALTKQDTVSLVGFGTFSVKHRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN ++ + ++I       FKA   LK  + 
Sbjct: 61 RNPRSGETIQIKASNAPGFKAGKALKDAVN 90


>gi|157368539|ref|YP_001476528.1| transcriptional regulator HU subunit alpha [Serratia
          proteamaculans 568]
 gi|157320303|gb|ABV39400.1| histone family protein DNA-binding protein [Serratia
          proteamaculans 568]
          Length = 90

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKAQAKLALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|319792456|ref|YP_004154096.1| integration host factor, beta subunit [Variovorax paradoxus EPS]
 gi|315594919|gb|ADU35985.1| integration host factor, beta subunit [Variovorax paradoxus EPS]
          Length = 107

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDLV+ ++     L+ +D+   V T+ + + D+ VRG  I+I  F +F V ++  R+
Sbjct: 1  MTRSDLVEELAARFAQLTHRDAEYAVKTILDAMSDALVRGHRIEIRGFGSFSVNRRPPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V+I  +RV  FK    L++ +
Sbjct: 61 GRNPRSGESVQIPEKRVPHFKPGKALREAV 90


>gi|299066734|emb|CBJ37928.1| DNA-binding protein HU-beta, transcriptional regulator, beta
          subunit [Ralstonia solanacearum CMR15]
          Length = 90

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  ++ +  +S+  + R +  L + I D+   G ++ +  F TF V Q+ +R G
Sbjct: 1  MNKTDLIDHVAAQTDMSKAAAGRAIDALIDGIKDALCDGGSVTLVGFGTFLVGQRSARAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI+  +V  FK    LK  + 
Sbjct: 61 RNPRTGATIKIEGAKVAKFKPGKALKDALN 90


>gi|317046455|ref|YP_004114103.1| histone family protein DNA-binding protein [Pantoea sp. At-9b]
 gi|316948072|gb|ADU67547.1| histone family protein DNA-binding protein [Pantoea sp. At-9b]
          Length = 90

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIAEKADLSKTQAKTALESTLAAITESLKDGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|212711444|ref|ZP_03319572.1| hypothetical protein PROVALCAL_02517 [Providencia alcalifaciens
          DSM 30120]
 gi|212685900|gb|EEB45428.1| hypothetical protein PROVALCAL_02517 [Providencia alcalifaciens
          DSM 30120]
          Length = 98

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 55/95 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ +++ ++ G+S++D+   V T F E+  S   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSENLFEKLGVSKRDAKDLVETFFEEVRLSLENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +++ I  RRVV F+    LK R+     
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVERATP 96


>gi|89094099|ref|ZP_01167042.1| integration host factor beta subunit [Oceanospirillum sp. MED92]
 gi|89081574|gb|EAR60803.1| integration host factor beta subunit [Oceanospirillum sp. MED92]
          Length = 96

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ +      LS KD    V T+ + + +S   G  I+I  F +F +  +  R 
Sbjct: 1  MTKSELIEILVDRHDQLSVKDIELSVKTMLDHMTESLSEGNRIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T + V ++ + V  FK    L++++ D + 
Sbjct: 61 GRNPKTGESVSLEEKFVPHFKPGKELREQVNDSIN 95


>gi|85714140|ref|ZP_01045129.1| integration host factor beta subunit [Nitrobacter sp. Nb-311A]
 gi|85699266|gb|EAQ37134.1| integration host factor beta subunit [Nitrobacter sp. Nb-311A]
          Length = 101

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 54/100 (54%), Gaps = 1/100 (1%)

Query: 5   ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV+ I++    L ++D    V  + +EI  +  RG+ +++  F  F VK + +R 
Sbjct: 1   MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           GRN +T + V +D + V  FK    +++R+  +    + +
Sbjct: 61  GRNPRTGEHVPVDQKSVPFFKTGKEMRERLNRENATSEAS 100


>gi|239817235|ref|YP_002946145.1| histone family protein DNA-binding protein [Variovorax paradoxus
          S110]
 gi|239803812|gb|ACS20879.1| histone family protein DNA-binding protein [Variovorax paradoxus
          S110]
          Length = 93

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+++  LS+ D+ R   +   ++  + VRGE +++  F TF V  +  R G
Sbjct: 1  MNKTELIAAIAEDTNLSKADAGRAFDSALEQLSRALVRGETVQLIGFGTFSVADRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T +++ I   +   F A   LK  I  
Sbjct: 61 RNPSTGEQITIKASKSAKFAAGKALKDAINQ 91


>gi|117925356|ref|YP_865973.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
 gi|117609112|gb|ABK44567.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
          Length = 96

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/93 (39%), Positives = 55/93 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++D+V+++    GLS+K+S   V ++F  I      GE +KI  F  F +  K  R 
Sbjct: 2  TMTKADIVQTVYHRLGLSKKESADVVESVFEIIRSQLESGEPVKIYGFGGFSMLDKKPRQ 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T ++V+I  RRVV FKAS IL  R+   
Sbjct: 62 GRNPKTGEDVEISARRVVTFKASQILLDRVNKG 94


>gi|262393794|ref|YP_003285648.1| integration host factor subunit beta [Vibrio sp. Ex25]
 gi|269966532|ref|ZP_06180615.1| integration host factor beta subunit [Vibrio alginolyticus 40B]
 gi|262337388|gb|ACY51183.1| integration host factor beta subunit [Vibrio sp. Ex25]
 gi|269828876|gb|EEZ83127.1| integration host factor beta subunit [Vibrio alginolyticus 40B]
          Length = 93

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + +++  LS K+    V  +   +  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLCAEQTHLSAKEVEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L++R+ 
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91


>gi|119505267|ref|ZP_01627342.1| integration host factor subunit alpha [marine gamma
          proteobacterium HTCC2080]
 gi|119458958|gb|EAW40058.1| integration host factor subunit alpha [marine gamma
          proteobacterium HTCC2080]
          Length = 104

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS  +T+S++   + +E GL+++++   V   F EI       E +K+S F  F ++ K 
Sbjct: 1  MS-ALTKSEMADKLFEELGLNKREAKELVEQFFEEIRICLENNEQVKLSGFGNFDLRDKR 59

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R GRN +T + + I  RRVV F+    LK ++  
Sbjct: 60 QRPGRNPKTGEAIPISARRVVTFRPGQKLKAKVEQ 94


>gi|78486002|ref|YP_391927.1| integration host factor, alpha subunit [Thiomicrospira crunogena
          XCL-2]
 gi|123755188|sp|Q31F20|IHFA_THICR RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|78364288|gb|ABB42253.1| Histone-like DNA-binding protein [Thiomicrospira crunogena XCL-2]
          Length = 97

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 59/92 (64%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ +++S +FG ++++S   V   ++E+ +  V+GE IK+S F  F +K K +R 
Sbjct: 2  ALTKADIAETLSDKFGFNKRESKELVEQFYDEMSEVLVKGEQIKLSGFGNFELKDKSARP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T ++V I  RRVV FK    L+ +I +
Sbjct: 62 GRNPRTGEDVPISARRVVTFKPGQKLRAQIDN 93


>gi|15672484|ref|NP_266658.1| HU like DNA-binding protein [Lactococcus lactis subsp. lactis
          Il1403]
 gi|116511328|ref|YP_808544.1| nucleoid protein Hbs [Lactococcus lactis subsp. cremoris SK11]
 gi|125623363|ref|YP_001031846.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|281490996|ref|YP_003352976.1| DNA-binding protein HU [Lactococcus lactis subsp. lactis KF147]
 gi|14194595|sp|Q9CI64|DBH_LACLA RecName: Full=DNA-binding protein HU
 gi|12723384|gb|AAK04600.1|AE006285_8 HU like DNA-binding protein [Lactococcus lactis subsp. lactis
          Il1403]
 gi|12830838|gb|AAK08212.1|AF320913_2 HllA [Lactococcus lactis]
 gi|12830846|gb|AAK08218.1|AF320915_2 HllA [Lactococcus lactis subsp. cremoris MG1363]
 gi|12830851|gb|AAK08222.1|AF320916_3 HllA [Lactococcus lactis]
 gi|116106982|gb|ABJ72122.1| bacterial nucleoid protein Hbs [Lactococcus lactis subsp.
          cremoris SK11]
 gi|124492171|emb|CAL97100.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|281374754|gb|ADA64274.1| DNA-binding protein HU, histone-like protein [Lactococcus lactis
          subsp. lactis KF147]
 gi|300070111|gb|ADJ59511.1| DNA-binding protein HU, histone-like protein [Lactococcus lactis
          subsp. cremoris NZ9000]
 gi|326406030|gb|ADZ63101.1| DNA-binding protein HU-beta [Lactococcus lactis subsp. lactis
          CV56]
          Length = 91

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 48/89 (53%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  ++ + GL++KDS + V      + +   +GE +++  F TF  +++ +R GR
Sbjct: 3  NKQDLIAEVAAKTGLTKKDSEKAVNAFGEVVTEFLAKGEKVQLIGFGTFETRERAAREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT + +KI    V  FKA   LK  + 
Sbjct: 63 NPQTGEAIKIAATVVPAFKAGKALKDAVK 91


>gi|225420306|ref|ZP_03762609.1| hypothetical protein CLOSTASPAR_06649 [Clostridium asparagiforme
          DSM 15981]
 gi|225041123|gb|EEG51369.1| hypothetical protein CLOSTASPAR_06649 [Clostridium asparagiforme
          DSM 15981]
          Length = 91

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  LS+KD+ + V    + + +  V+GE +++  F  F V  + +RV 
Sbjct: 1  MNKTELIAAVAEKAELSKKDAEKAVKAFTDVVTEELVKGEKVQLVGFGNFEVSARAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + + ++  +   FKA   LK  + +
Sbjct: 61 RNPKTGEPMNVEASKTPKFKAGKALKDAVNN 91


>gi|255263556|ref|ZP_05342898.1| integration host factor, beta subunit [Thalassiobium sp. R2A62]
 gi|255105891|gb|EET48565.1| integration host factor, beta subunit [Thalassiobium sp. R2A62]
          Length = 93

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+LV+ I+ +   L ++D  + V T+F+EI ++   G+ +++  F  F VK++ +R 
Sbjct: 1  MIRSELVQKIADENPHLYQRDVEKIVNTIFDEITEAMADGDRVELRGFGAFSVKRRDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V ++ + V  FKA  +L+ R+  
Sbjct: 61 GRNPRTGESVHVEEKHVPFFKAGKLLRDRLNG 92


>gi|270265438|ref|ZP_06193697.1| DNA-binding protein HU-alpha [Serratia odorifera 4Rx13]
 gi|1706309|sp|P52680|DBHA_SERMA RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2;
          AltName: Full=NS2
 gi|802006|gb|AAA65987.1| HU alpha [Serratia marcescens]
 gi|270040631|gb|EFA13736.1| DNA-binding protein HU-alpha [Serratia odorifera 4Rx13]
 gi|1586262|prf||2203354A heterodimeric HU protein
          Length = 90

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKAQAKLALESTLAAITESLKEGDAVQLVGFGTFKVNHRSERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|146329216|ref|YP_001209151.1| DNA-binding protein HU [Dichelobacter nodosus VCS1703A]
 gi|146232686|gb|ABQ13664.1| DNA-binding protein Hu [Dichelobacter nodosus VCS1703A]
          Length = 104

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 49/91 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  I++  G+++  + + +    + + +S V+G+ + +  F TF  +++ +R+G
Sbjct: 1  MNKTELVDVIAEAAGITKAQAGKALDAFTDCVTESLVKGDKVTLIGFGTFETRERSARIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T +++ I       FKA   LK  +  
Sbjct: 61 HNPRTREKINIAASTTPAFKAGKKLKDAVNQ 91


>gi|86747764|ref|YP_484260.1| integration host factor subunit beta [Rhodopseudomonas palustris
           HaA2]
 gi|123004672|sp|Q2J2G1|IHFB_RHOP2 RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|86570792|gb|ABD05349.1| integration host factor, beta subunit [Rhodopseudomonas palustris
           HaA2]
          Length = 101

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 6/106 (5%)

Query: 5   ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV+ I++    L ++D    V  + +EI D+  RG+ +++  F  F VK + +R 
Sbjct: 1   MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARA 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
           GRN +T   V +D + V  FK    +++R+      R+    D  +
Sbjct: 61  GRNPRTGAHVPVDQKSVPFFKTGKEMRERLN-----RETGDTDTGA 101


>gi|316934097|ref|YP_004109079.1| integration host factor subunit alpha [Rhodopseudomonas palustris
          DX-1]
 gi|315601811|gb|ADU44346.1| integration host factor, alpha subunit [Rhodopseudomonas
          palustris DX-1]
          Length = 118

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/95 (51%), Positives = 68/95 (71%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +T+TR DL +++ ++ GLSR +S+ FV  +  EI D   RGE +K+SSF +F V+QKG 
Sbjct: 3  GRTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFLVRQKGE 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RVGRN +T  EV I PRRV+VFK S+ILK+RI  +
Sbjct: 63 RVGRNPKTGTEVPISPRRVMVFKPSAILKQRINAN 97


>gi|94495938|ref|ZP_01302517.1| integration host factor, alpha subunit [Sphingomonas sp. SKA58]
 gi|94424630|gb|EAT09652.1| integration host factor, alpha subunit [Sphingomonas sp. SKA58]
          Length = 96

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/94 (43%), Positives = 65/94 (69%), Gaps = 1/94 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS T+TR+DL +S+++  GLSR ++   V ++ + + D+  RGE +KISSF TF ++ K 
Sbjct: 4  MS-TLTRADLAESLNRHVGLSRAEAAALVESILDHMSDALERGENVKISSFGTFVLRDKT 62

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           R+GRN +T  EV I+PRRV+ F+AS  ++ R+ 
Sbjct: 63 QRMGRNPKTGVEVPIEPRRVLTFRASQTMRDRVA 96


>gi|260773186|ref|ZP_05882102.1| integration host factor beta subunit [Vibrio metschnikovii CIP
          69.14]
 gi|260612325|gb|EEX37528.1| integration host factor beta subunit [Vibrio metschnikovii CIP
          69.14]
          Length = 94

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + + +  LS K+    V  +   +  +   GE I+I  F +F +  +  R+
Sbjct: 1  MTKSELIERLCAVQTHLSAKEIEDAVKDVLEHMSKTLEDGERIEIRGFGSFSLHYREPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T ++V+++ + V  FK    L++R+  ++
Sbjct: 61 GRNPKTGEKVELEGKYVPHFKPGKELRERVNQNI 94


>gi|163741403|ref|ZP_02148794.1| integration host factor, alpha subunit [Phaeobacter gallaeciensis
          2.10]
 gi|161385137|gb|EDQ09515.1| integration host factor, alpha subunit [Phaeobacter gallaeciensis
          2.10]
          Length = 92

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/90 (47%), Positives = 62/90 (68%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DL +++ +E GLSR +S + V +L   + D+ VRGE +KISSF TF V+ K +RVGRN +
Sbjct: 2  DLSEAVFREVGLSRNESAQLVESLLQHMSDALVRGEQVKISSFGTFSVRDKSARVGRNPK 61

Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          T +EV I PRRV+ F+ S ++K R+ D  R
Sbjct: 62 TGEEVPIQPRRVLTFRPSHLMKDRVADGNR 91


>gi|330752075|emb|CBL80585.1| histone-like bacterial DNA-binding protein [uncultured
          Leeuwenhoekiella sp.]
          Length = 90

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+ ++++  G+++  + + + +    +  S   G+ + +  F ++ V Q+ +R G
Sbjct: 1  MNKSDLIDAMAESAGITKAAAKKALESFLGNVEKSLKSGDRVSLVGFGSWSVSQRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++I  + VV FKA S L   + 
Sbjct: 61 RNPQTGKTIQIAAKNVVKFKAGSDLSDAVN 90


>gi|162448780|ref|YP_001611147.1| integration host factor beta-subunit [Sorangium cellulosum 'So ce
          56']
 gi|161159362|emb|CAN90667.1| integration host factor beta-subunit [Sorangium cellulosum 'So ce
          56']
          Length = 114

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 47/92 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+ +I+    L++  +   V  +F+ +  +  R E I+I  F +F V+      G
Sbjct: 1  MTKSELIDAIAGRGELTKARAELVVNCVFDAMTQALQRNEGIEIRGFGSFTVRPYKPYSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T Q V +  +R+  FK    LK+ +   
Sbjct: 61 RNPRTGQPVPVPAKRLPFFKVGKELKELVNAS 92


>gi|121605741|ref|YP_983070.1| integration host factor subunit alpha [Polaromonas
           naphthalenivorans CJ2]
 gi|166918514|sp|A1VR71|IHFA_POLNA RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|120594710|gb|ABM38149.1| integration host factor, alpha subunit [Polaromonas
           naphthalenivorans CJ2]
          Length = 123

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 55/95 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +  +T++ L + + ++ GL++++S   +   F  I D  V G+ +KIS F  F ++ K  
Sbjct: 10  TPALTKAHLAELLFEQIGLNKRESKEMIDAFFELISDRLVEGKDVKISGFGNFQIRTKAP 69

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I+ RRVV F AS  LK++I   
Sbjct: 70  RPGRNPRTGEAIPIESRRVVTFHASHKLKEQIQGS 104


>gi|261855913|ref|YP_003263196.1| integration host factor, subunit alpha [Halothiobacillus
          neapolitanus c2]
 gi|261836382|gb|ACX96149.1| integration host factor, alpha subunit [Halothiobacillus
          neapolitanus c2]
          Length = 100

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 53/91 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++DLV+ +  E GL+++++  FV   F E+  +   GE IK+S F  F ++ K  R 
Sbjct: 2  ALTKADLVEKLHAELGLNKREAKDFVDIFFEELRATLESGEEIKLSGFGNFQLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T + + +  RRVV F+A   LK  + 
Sbjct: 62 GRNPRTGEMIPVSARRVVTFRAGQKLKAMVE 92


>gi|50119198|ref|YP_048365.1| transcriptional regulator HU subunit alpha [Pectobacterium
          atrosepticum SCRI1043]
 gi|49609724|emb|CAG73158.1| DNA-binding protein HU-alpha [Pectobacterium atrosepticum
          SCRI1043]
          Length = 90

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|315123478|ref|YP_004065484.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas sp.
          SM9913]
 gi|315017238|gb|ADT70575.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas sp.
          SM9913]
          Length = 91

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ IS +  +S+  +TR +      +  S   G ++ +  F TF VK++ +R G
Sbjct: 1  MNKAQLVEKISTDAEISKAAATRALDAFTGAVTSSLKEGNSVALVGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I    +  FK    LK ++ 
Sbjct: 61 RNPQTGAEIQISAATIPSFKPGKGLKDQVN 90


>gi|218702635|ref|YP_002410264.1| transcriptional regulator HU subunit alpha [Escherichia coli
          IAI39]
 gi|218372621|emb|CAR20496.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli IAI39]
          Length = 90

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIAEKAELSKNQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|114707247|ref|ZP_01440145.1| histone-like protein [Fulvimarina pelagi HTCC2506]
 gi|114537443|gb|EAU40569.1| histone-like protein [Fulvimarina pelagi HTCC2506]
          Length = 91

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV ++S++  LS++ +T  V  +F  I  +   G  I++  F TF V  + +  G
Sbjct: 1  MNKNELVSAVSEKADLSKQQATAAVDAVFGTIEKTLADGGDIRLVGFGTFAVTHRNASKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T  EV I  R V  F     LK  +  
Sbjct: 61 RNPSTGAEVDIPARNVPKFTPGKGLKDSVNK 91


>gi|78187799|ref|YP_375842.1| histone-like DNA-binding protein [Chlorobium luteolum DSM 273]
 gi|78167701|gb|ABB24799.1| Histone-like DNA-binding protein [Chlorobium luteolum DSM 273]
          Length = 91

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++++LV+ I+ +  L++ D+ R V    N +  S   G+ + +  F TF    + +R G
Sbjct: 1  MSKAELVEKIAAQAKLTKVDAERAVNAFINVVTSSLKGGDDVTLVGFGTFTTGDRAARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I  ++VV FK    LK  +
Sbjct: 61 RNPQTGKAITIPAKKVVKFKPGKALKDEV 89


>gi|90419421|ref|ZP_01227331.1| integration host factor [Aurantimonas manganoxydans SI85-9A1]
 gi|90336358|gb|EAS50099.1| integration host factor [Aurantimonas manganoxydans SI85-9A1]
          Length = 123

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/98 (44%), Positives = 70/98 (71%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+TR+DL +++ ++ GLSR +S + V  + +E+C +   GE++KISSF +F V++K  R
Sbjct: 5   RTLTRADLSEAVFRKIGLSRTESAQLVEMVLDEMCSTIASGESVKISSFGSFLVREKNER 64

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           +GRN +T +EV I PRRV VFK S++LK RI++    R
Sbjct: 65  IGRNPKTGEEVPILPRRVAVFKPSNVLKDRIVEAHVQR 102


>gi|84387165|ref|ZP_00990187.1| DNA-binding protein HU-beta [Vibrio splendidus 12B01]
 gi|84378026|gb|EAP94887.1| DNA-binding protein HU-beta [Vibrio splendidus 12B01]
          Length = 91

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 46/87 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S LV+ I+    +S+  +   +  L   I ++  +G+ + I  F +F V  + +R G
Sbjct: 1  MNKSQLVEHIATSADISKDQAGSALNALVEGISNTLAKGDDVAILGFGSFKVNSRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T +E++I   +   FKA   LK+
Sbjct: 61 RNPRTGEEIQISASKTPAFKAGKALKE 87


>gi|310815851|ref|YP_003963815.1| Histone-like DNA-binding protein (IHF) [Ketogulonicigenium
          vulgare Y25]
 gi|308754586|gb|ADO42515.1| Histone-like DNA-binding protein (IHF) [Ketogulonicigenium
          vulgare Y25]
          Length = 99

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/95 (49%), Positives = 68/95 (71%), Gaps = 1/95 (1%)

Query: 1  MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          MS KT+TR DL +++  + GLSR DS   V T+   I D+ V GE++KISSF TF V++K
Sbjct: 1  MSEKTLTRMDLAEAVHNKVGLSRNDSATLVETVLQHISDALVAGESVKISSFGTFSVREK 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           +RVGRN +T  EV I+PRRV+ F++S ++K+R+ 
Sbjct: 61 SARVGRNPKTGIEVPINPRRVLTFRSSHLMKERVA 95


>gi|149914952|ref|ZP_01903481.1| integration host factor, alpha subunit [Roseobacter sp. AzwK-3b]
 gi|149811140|gb|EDM70977.1| integration host factor, alpha subunit [Roseobacter sp. AzwK-3b]
          Length = 92

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/90 (46%), Positives = 63/90 (70%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DL +++ +E GLSR DS   V ++   + D+ VRGE +KISSF TF V++K +RVGRN +
Sbjct: 2  DLSEAVFREVGLSRNDSAELVESVLAHMSDALVRGEQVKISSFGTFSVREKSARVGRNPK 61

Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          T +EV I+PRRV+ F+ S ++K R+ D  +
Sbjct: 62 TGEEVPINPRRVLTFRPSHLMKDRVSDGNK 91


>gi|150388012|ref|YP_001318061.1| histone family protein DNA-binding protein [Alkaliphilus
          metalliredigens QYMF]
 gi|149947874|gb|ABR46402.1| histone family protein DNA-binding protein [Alkaliphilus
          metalliredigens QYMF]
          Length = 92

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++++  L++KD+   + +    + ++ V G+ +++  F TF V+++  R G
Sbjct: 1  MNKADLVAKMAEKSELTKKDAELALNSFMESVEEALVDGDKVQLVGFGTFEVRERKPRQG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIM 94
          RN +  ++ ++I   +  VFKA   LK++I 
Sbjct: 61 RNPRNPEQVIEIPASKAPVFKAGKTLKEKIN 91


>gi|144899188|emb|CAM76052.1| Histone-like bacterial DNA-binding protein [Magnetospirillum
          gryphiswaldense MSR-1]
          Length = 104

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/97 (47%), Positives = 69/97 (71%), Gaps = 1/97 (1%)

Query: 1  MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          MS  TITR+ L +++ +E GLSR +S+  +  +  E+ ++  +GEA+KISSF +F V+ K
Sbjct: 1  MSDNTITRAQLSEAVYQEVGLSRNESSDLLEAVLEEVAEALAQGEAVKISSFGSFAVRSK 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          G R+GRN +T +EV I PRRV+VF+ S +LKK+I D 
Sbjct: 61 GQRIGRNPKTGEEVPILPRRVLVFRPSQLLKKKINDG 97


>gi|91974676|ref|YP_567335.1| integration host factor subunit beta [Rhodopseudomonas palustris
          BisB5]
 gi|123722247|sp|Q13EQ5|IHFB_RHOPS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|91681132|gb|ABE37434.1| integration host factor, beta subunit [Rhodopseudomonas palustris
          BisB5]
          Length = 101

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  + +EI D+  RG+ +++  F  F VK + +R 
Sbjct: 1  MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T   V +D + V  FK    +++R+  +
Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRE 93


>gi|168183614|ref|ZP_02618278.1| DNA-binding protein HU [Clostridium botulinum Bf]
 gi|237796995|ref|YP_002864547.1| DNA-binding protein HU [Clostridium botulinum Ba4 str. 657]
 gi|182673203|gb|EDT85164.1| DNA-binding protein HU [Clostridium botulinum Bf]
 gi|229261295|gb|ACQ52328.1| DNA-binding protein HU [Clostridium botulinum Ba4 str. 657]
          Length = 93

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 53/92 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ S++++  L++KD+   +      + ++   GE +++  F TF  +++  RVG
Sbjct: 1  MNKSELITSMAEKSKLTKKDAETALKAFIESVEEALEGGEKVQLVGFGTFETRERAERVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T +E+ I      VFKA   LK+++  +
Sbjct: 61 RNPRTKEEITIPASIAPVFKAGKELKEKVNKN 92


>gi|284924092|emb|CBG37191.1| DNA-binding protein HU-alpha [Escherichia coli 042]
          Length = 90

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIAEKAELSKTQAKAALESTLTAITESLKEGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|238918150|ref|YP_002931664.1| transcriptional regulator HU subunit alpha [Edwardsiella ictaluri
          93-146]
 gi|238867718|gb|ACR67429.1| DNA-binding protein HU-beta [Edwardsiella ictaluri 93-146]
          Length = 90

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKAQAKAALESTLAAITESLKAGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|319404309|emb|CBI77902.1| integration host factor alpha subunit [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 103

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/100 (53%), Positives = 72/100 (72%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           SKT+TR+DL  ++ ++ GLS  +S   V  + +EIC+S VRGE +K+SSFATF V+ K  
Sbjct: 3   SKTVTRADLAGAVCRKVGLSHTESADLVELVLDEICNSLVRGEMVKLSSFATFQVRDKSE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           RVGRN +T  E  I PRRVV FKA+++LKKRI+D  R +K
Sbjct: 63  RVGRNPKTGVEASIPPRRVVTFKAANVLKKRILDTHRAKK 102


>gi|237803593|ref|ZP_04591178.1| DNA-binding protein HU, beta subunit [Pseudomonas syringae pv.
          oryzae str. 1_6]
 gi|331025575|gb|EGI05631.1| DNA-binding protein HU, beta subunit [Pseudomonas syringae pv.
          oryzae str. 1_6]
          Length = 90

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  +   +  +   G+++ +  F TF V  + +RVG
Sbjct: 1  MNKSELIDAIAASADIPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++I   +   FKA   LK  + 
Sbjct: 61 RNPQTGKTLQIAAAKKPGFKAGKALKDAVN 90


>gi|146309880|ref|YP_001174954.1| transcriptional regulator HU subunit alpha [Enterobacter sp. 638]
 gi|261340912|ref|ZP_05968770.1| DNA-binding protein HU-beta [Enterobacter cancerogenus ATCC
          35316]
 gi|296100631|ref|YP_003610777.1| transcriptional regulator HU subunit alpha [Enterobacter cloacae
          subsp. cloacae ATCC 13047]
 gi|145316756|gb|ABP58903.1| bacterial nucleoid protein HU alpha subunit [Enterobacter sp.
          638]
 gi|288316967|gb|EFC55905.1| DNA-binding protein HU-beta [Enterobacter cancerogenus ATCC
          35316]
 gi|295055090|gb|ADF59828.1| transcriptional regulator HU subunit alpha [Enterobacter cloacae
          subsp. cloacae ATCC 13047]
 gi|295095112|emb|CBK84202.1| bacterial nucleoid protein HU alpha subunit [Enterobacter cloacae
          subsp. cloacae NCTC 9394]
          Length = 90

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKVQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|299139694|ref|ZP_07032867.1| histone family protein DNA-binding protein [Acidobacterium sp.
           MP5ACTX8]
 gi|298598318|gb|EFI54483.1| histone family protein DNA-binding protein [Acidobacterium sp.
           MP5ACTX8]
          Length = 117

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 2/108 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+++LV  +     L+R+D    V TLF+ I  +   G+ +++  F +F  +Q+  R G
Sbjct: 1   MTKAELVDHVIALGDLTRRDGEVIVDTLFDSIIGAVKSGDKVEVRGFGSFRTRQRKPRTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM--DDMRGRKCNKDDVTSP 110
           RN +T   V +  +RV  FK S  L+  I   +    R     +   P
Sbjct: 61  RNPKTGASVSVPAKRVPYFKPSKDLRDLINPGESKPVRAAKTQEPHQP 108


>gi|167629351|ref|YP_001679850.1| DNA-binding protein hu [Heliobacterium modesticaldum Ice1]
 gi|167592091|gb|ABZ83839.1| DNA-binding protein hu [Heliobacterium modesticaldum Ice1]
          Length = 91

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 50/88 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++  L+ +D+ + V   F  + ++   G+ +++  F TF V+++ +R G
Sbjct: 1  MNKAELVSAVAEKAQLTEEDAKKAVNAFFAVVQEALKAGDTVQLLGFGTFKVRERTAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN QT + + I   +   FKA   L+  
Sbjct: 61 RNPQTGETIIIKASKTPTFKAGKSLRDA 88


>gi|242347958|ref|YP_002995519.1| DNA-binding protein HU-beta (NS1) (HU-1) [Aeromonas hydrophila]
 gi|224831777|gb|ACN66908.1| DNA-binding protein HU-beta (NS1) (HU-1) [Aeromonas hydrophila]
          Length = 90

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  ++++  +S+  +   V  L N + +    G  + ++ F TFHVK + +R G
Sbjct: 1  MNKSELIMKVAEDADISKAQAEAAVNALINSVTEELKSGGTVALTGFGTFHVKARAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++I    +  FKA   LK  + 
Sbjct: 61 RNPQTGENIQIAAANIPGFKAGKGLKDTVN 90


>gi|332971263|gb|EGK10226.1| DNA-binding protein HU [Desmospora sp. 8437]
          Length = 91

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 54/91 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K +++E G S+ ++ + V  + ++I ++  RGE + +  F  F V+++ +R+ 
Sbjct: 1  MNKTELTKRVAQETGKSKTEAGQMVDVVLDQISEALQRGEKVSLFGFGNFEVRERAARMA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + + ++ +R+  FK    LK+ +  
Sbjct: 61 RNPKTGETIHVEAKRIPAFKPGKQLKEVVNG 91


>gi|300022815|ref|YP_003755426.1| integration host factor, subunit alpha [Hyphomicrobium
          denitrificans ATCC 51888]
 gi|299524636|gb|ADJ23105.1| integration host factor, alpha subunit [Hyphomicrobium
          denitrificans ATCC 51888]
          Length = 101

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/97 (44%), Positives = 64/97 (65%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          + KT+TR+DL +++  + GL R +S   V  +  EI  S   G+ +K+SSF +F ++QKG
Sbjct: 2  VGKTLTRADLAEAVVSKVGLPRNESQDLVERVLEEISGSLADGDPVKLSSFGSFGIRQKG 61

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           RVGRN +T +EV I PRRV+VF+ S+I+K RI    
Sbjct: 62 ERVGRNPKTGEEVPITPRRVLVFRPSNIMKDRINKGH 98


>gi|253581050|ref|ZP_04858311.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847713|gb|EES75682.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 92

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 49/91 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++KE  LS+KD    + +  + +      G  I++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAMAKETNLSKKDVEDVLKSFVDVVSKELKNGGKIQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + +KI+  +   FKA   LK  +  
Sbjct: 61 RNPQTGETMKIEASKSPKFKAGKALKDMVNG 91


>gi|260913274|ref|ZP_05919756.1| DNA-binding protein HU [Pasteurella dagmatis ATCC 43325]
 gi|260632861|gb|EEX51030.1| DNA-binding protein HU [Pasteurella dagmatis ATCC 43325]
          Length = 90

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+    L++K +   +      I  S   G+ +++  F TF V ++ +R G
Sbjct: 1  MNKTDLIDAIASAAELNKKQAKAALEATLEAISGSLKAGQPVQLIGFGTFKVNERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E+KI   +V  F A   LK  + 
Sbjct: 61 RNPQTGAEIKIAASKVPAFVAGKALKDAVK 90


>gi|260431167|ref|ZP_05785138.1| integration host factor, beta subunit [Silicibacter
          lacuscaerulensis ITI-1157]
 gi|260414995|gb|EEX08254.1| integration host factor, beta subunit [Silicibacter
          lacuscaerulensis ITI-1157]
          Length = 94

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L ++D  R V T+F EI D+  RG+ +++  F  F VK++ +RV
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTVFEEITDAMARGDRVELRGFGAFSVKKRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V+++ + V  FK   +L+ R+  
Sbjct: 61 GRNPRTGETVQVEEKCVPFFKTGKLLRDRLNG 92


>gi|304321951|ref|YP_003855594.1| Bacterial nucleoid DNA-binding protein HU-beta [Parvularcula
          bermudensis HTCC2503]
 gi|303300853|gb|ADM10452.1| Bacterial nucleoid DNA-binding protein HU-beta [Parvularcula
          bermudensis HTCC2503]
          Length = 90

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ V  ++    +++ D+ R V  +F+ I ++   G+ ++I  F TF   ++ +R G
Sbjct: 1  MNKNEFVDRVAAIADITKADAGRTVDAVFDAITEALKNGDDVRIVGFGTFSSSRRPAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + ++I       F A   LK  + 
Sbjct: 61 RNPRTGETIQIKASNQPKFSAGKGLKDALN 90


>gi|326335932|ref|ZP_08202109.1| DNA-binding protein HU [Capnocytophaga sp. oral taxon 338 str.
          F0234]
 gi|325691896|gb|EGD33858.1| DNA-binding protein HU [Capnocytophaga sp. oral taxon 338 str.
          F0234]
          Length = 90

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I++E GL++ D+ + +      +  +  +G+ I +  F ++ V +K +R G
Sbjct: 1  MNKTELIDAIAEEAGLTKADAKKALEAFLACVEKTLKKGDKISLVGFGSWSVAEKAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI  ++VV FKA + L   + 
Sbjct: 61 RNPQTGKTIKIPAKKVVKFKAGTELSNAVN 90


>gi|209885010|ref|YP_002288867.1| integration host factor, alpha subunit [Oligotropha carboxidovorans
           OM5]
 gi|226709737|sp|B6JGR8|IHFA_OLICO RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|209873206|gb|ACI93002.1| integration host factor, alpha subunit [Oligotropha carboxidovorans
           OM5]
          Length = 114

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/111 (45%), Positives = 72/111 (64%), Gaps = 1/111 (0%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR DL +++ ++ GLSR +S  FV  +  EI D   +GE +K+SSF +F V++KG 
Sbjct: 5   GKTVTRVDLCEAVYQKVGLSRTESAAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGE 64

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSG 112
           R+GRN +T  EV I PRRV+VFK S+ILK+RI +     K N D     +G
Sbjct: 65  RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINNG-AAAKTNGDVAKVAAG 114


>gi|163739054|ref|ZP_02146467.1| integration host factor beta subunit [Phaeobacter gallaeciensis
          BS107]
 gi|163741705|ref|ZP_02149095.1| integration host factor subunit beta [Phaeobacter gallaeciensis
          2.10]
 gi|254476014|ref|ZP_05089400.1| integration host factor, beta subunit [Ruegeria sp. R11]
 gi|161384878|gb|EDQ09257.1| integration host factor subunit beta [Phaeobacter gallaeciensis
          2.10]
 gi|161387859|gb|EDQ12215.1| integration host factor beta subunit [Phaeobacter gallaeciensis
          BS107]
 gi|214030257|gb|EEB71092.1| integration host factor, beta subunit [Ruegeria sp. R11]
          Length = 94

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L ++D  R V T+F E+ D+  RG+ +++  F  F VKQ+ +RV
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMARGDRVELRGFGAFSVKQRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V ++ + V  FK   +L+ R+  
Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRLNG 92


>gi|256375007|ref|YP_003098667.1| histone family protein DNA-binding protein [Actinosynnema mirum
          DSM 43827]
 gi|255919310|gb|ACU34821.1| histone family protein DNA-binding protein [Actinosynnema mirum
          DSM 43827]
          Length = 90

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++   + +  +TR +  + + I  +  +G+ + ++ F +F VK++ +R G
Sbjct: 1  MNKAELVSAIAEGADVEKAVATRALDAVLDSITKALAQGDDVVLTGFGSFTVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++I   + V FK    LK  + 
Sbjct: 61 RNPQTGEAIEIAASKAVGFKVGKALKDAVN 90


>gi|157373740|ref|YP_001472340.1| histone family protein DNA-binding protein [Shewanella sediminis
          HAW-EB3]
 gi|157316114|gb|ABV35212.1| histone family protein DNA-binding protein [Shewanella sediminis
          HAW-EB3]
          Length = 90

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  I++   L++ ++ R + +    + ++   G+ I I  F +F    + +R G
Sbjct: 1  MNKTELVAKIAENAELTKAEAARALKSFEETVTEAMKNGDKISIVGFGSFETSNRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I    V  FKA   LK  + 
Sbjct: 61 RNPQTGKEIQIPAATVPKFKAGKTLKDSVN 90


>gi|114330676|ref|YP_746898.1| histone family protein DNA-binding protein [Nitrosomonas eutropha
          C91]
 gi|114307690|gb|ABI58933.1| histone family protein DNA-binding protein [Nitrosomonas eutropha
          C91]
          Length = 90

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I++   +++ ++   +    + I D+  + +++ +  F TF V ++ +R G
Sbjct: 1  MNKSELIEAIARHADITKAEAGNALDGALSAIKDALSKNDSVTLVGFGTFKVGERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  E+KI   +V  F A   LK  + 
Sbjct: 61 RNPRTGAEIKIKAAKVPKFTAGKALKDAVN 90


>gi|293374971|ref|ZP_06621266.1| DNA-binding protein HU [Turicibacter sanguinis PC909]
 gi|325843341|ref|ZP_08167924.1| DNA-binding protein HU-beta [Turicibacter sp. HGF1]
 gi|292646381|gb|EFF64396.1| DNA-binding protein HU [Turicibacter sanguinis PC909]
 gi|325489370|gb|EGC91743.1| DNA-binding protein HU-beta [Turicibacter sp. HGF1]
          Length = 90

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + RS LV  I+++  L++KD+ +F++     + ++    + + +  F TF V+++ +R G
Sbjct: 1  MNRSQLVDKIAEKAELTKKDADKFLSAYIEAVTEALQADDKVALVGFGTFEVRERAARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RNL T + ++I+  +   FKA   LK  + 
Sbjct: 61 RNLHTGETIEIEASKYPAFKAGKALKDALK 90


>gi|291529702|emb|CBK95288.1| Bacterial nucleoid DNA-binding protein [Eubacterium rectale
          M104/1]
          Length = 90

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV +++++ GL+ KD    V      + ++ V+G+ +++  F TF V ++ +R+G
Sbjct: 1  MTKAELVSAMAEKTGLTNKDVAAAVNAFTESVKEALVKGDKVQLVGFGTFEVAERAARMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T + ++I   +   +K SS LK  + 
Sbjct: 61 RNPSTGESIQIAASKTAKWKPSSALKSDLN 90


>gi|209548801|ref|YP_002280718.1| integration host factor subunit alpha [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|226709743|sp|B5ZXV9|IHFA_RHILW RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|209534557|gb|ACI54492.1| integration host factor, alpha subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 112

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/102 (50%), Positives = 73/102 (71%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +S+ ++ GLSR +S   V T+ +E+C++ VRGE +K+SSFATF V+ K  
Sbjct: 3   GKTVTRADLAESVFRKVGLSRTESAELVETVIDEVCNAIVRGETVKLSSFATFQVRDKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           R+GRN +T +EV I PRRV+ FKAS++LK RI+     RK  
Sbjct: 63  RIGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVARKVK 104


>gi|145301241|ref|YP_001144081.1| DNA-binding protein HU-beta [Aeromonas salmonicida subsp.
          salmonicida A449]
 gi|142856018|gb|ABO92333.1| DNA-binding protein HU-beta [Aeromonas salmonicida subsp.
          salmonicida A449]
          Length = 90

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+ +I++   +++  +   V  L   I      G ++ ++ F TF V+ + +R G
Sbjct: 1  MNKSDLIMAIAESADITKAKAEAAVNALMATITTELKEGGSVALTGFGTFQVRARAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +++    +  FKA   LK  + 
Sbjct: 61 RNPQTGEAIEVAAANIPSFKAGKSLKDAVN 90


>gi|77919025|ref|YP_356840.1| integration host factor subunit alpha [Pelobacter carbinolicus
          DSM 2380]
 gi|77545108|gb|ABA88670.1| integration host factor, alpha subunit [Pelobacter carbinolicus
          DSM 2380]
          Length = 93

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 60/91 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV+ +  + G S+K+S+  V  +F+ + ++  +GE IK++ F  F VKQK +R G
Sbjct: 1  MTKADLVEKVYLKTGFSKKESSDIVEMVFDLMKNTLEKGEKIKLAGFGNFVVKQKATRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E++I  R ++ FK S +LK  I +
Sbjct: 61 RNPQTGEEIEISSRNILTFKPSQVLKAAINE 91


>gi|85705352|ref|ZP_01036451.1| integration host factor, beta subunit [Roseovarius sp. 217]
 gi|85670225|gb|EAQ25087.1| integration host factor, beta subunit [Roseovarius sp. 217]
          Length = 93

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L ++D  R V T+FN I D+   G  +++  F  F VK++ +R 
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTIFNAITDALAEGNRVELRGFGAFSVKKRDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V ++ + V  FK   +L+ R+  
Sbjct: 61 GRNPRTGESVHVEEKYVPFFKTGKLLRDRLNG 92


>gi|238765544|ref|ZP_04626458.1| DNA-binding protein HU-alpha [Yersinia kristensenii ATCC 33638]
 gi|238696239|gb|EEP89042.1| DNA-binding protein HU-alpha [Yersinia kristensenii ATCC 33638]
          Length = 91

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKVQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|225027811|ref|ZP_03717003.1| hypothetical protein EUBHAL_02071 [Eubacterium hallii DSM 3353]
 gi|224954861|gb|EEG36070.1| hypothetical protein EUBHAL_02071 [Eubacterium hallii DSM 3353]
          Length = 91

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 53/91 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++   L++KD+ + +    + + D   +GE I+++ F TF V ++ +R G
Sbjct: 1  MNKTELVAAIAERTELTKKDADQALKAFIDVVGDELSKGEKIQLAGFGTFEVTERAARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T + + I   +   FKA   LK+++ +
Sbjct: 61 INPRTKETIHIPASKAPKFKAMKSLKEKVNN 91


>gi|209548853|ref|YP_002280770.1| histone family protein DNA-binding protein [Rhizobium
          leguminosarum bv. trifolii WSM2304]
 gi|209534609|gb|ACI54544.1| histone family protein DNA-binding protein [Rhizobium
          leguminosarum bv. trifolii WSM2304]
          Length = 91

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ GL++ D+   V  +F+ +         I+++ F +F V  + +  G
Sbjct: 1  MNKNELVSAVAEKAGLTKSDAASAVDAVFDVVQGELKNKGDIRLAGFGSFTVSHRAASKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T  EV I  R V  F     LK  +  
Sbjct: 61 RNPSTGAEVDIPARNVPKFTPGKGLKDAVNG 91


>gi|154250603|ref|YP_001411427.1| integration host factor subunit beta [Parvibaculum
          lavamentivorans DS-1]
 gi|171769416|sp|A7HPD7|IHFB_PARL1 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|154154553|gb|ABS61770.1| integration host factor, beta subunit [Parvibaculum
          lavamentivorans DS-1]
          Length = 110

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 55/93 (59%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV  +++    L ++D  R V+T+F+EI  +  RG+ +++  F  F VK + +R 
Sbjct: 1  MIKSELVARLAQANPHLYQRDVERIVSTIFDEISAALARGDRVELRGFGAFSVKSRPART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V +D + V  FK    L++R+ + 
Sbjct: 61 GRNPRTGEPVHVDEKSVPFFKTGKELRERLNNA 93


>gi|15603597|ref|NP_246671.1| hypothetical protein PM1732 [Pasteurella multocida subsp.
          multocida str. Pm70]
 gi|14194596|sp|Q9CK94|DBH_PASMU RecName: Full=DNA-binding protein HU
 gi|12722146|gb|AAK03816.1| HupA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 90

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+    L++K +   +      I  S   GE +++  F TF V  + +R G
Sbjct: 1  MNKTDLIDAIASAAELNKKQAKAALEATLEAISGSLKAGEPVQLIGFGTFKVNSRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E+KI   +V  F A   LK  + 
Sbjct: 61 RNPQTGAEIKIAASKVPAFVAGKALKDAVK 90


>gi|86138658|ref|ZP_01057231.1| integration host factor, alpha subunit [Roseobacter sp. MED193]
 gi|85824718|gb|EAQ44920.1| integration host factor, alpha subunit [Roseobacter sp. MED193]
          Length = 92

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/90 (44%), Positives = 62/90 (68%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DL +++ +E GLSR +S + V ++   + D+ V+GE +KISSF TF V+ K +R+GRN +
Sbjct: 2  DLSEAVFREVGLSRNESAQLVESMLQHMSDALVQGEQVKISSFGTFSVRDKSARIGRNPK 61

Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          T +EV I PRRV+ F+ S ++K R+ D  R
Sbjct: 62 TGEEVPIQPRRVLTFRPSHLMKDRVADGNR 91


>gi|238790629|ref|ZP_04634394.1| DNA-binding protein HU-alpha [Yersinia frederiksenii ATCC 33641]
 gi|238721298|gb|EEQ12973.1| DNA-binding protein HU-alpha [Yersinia frederiksenii ATCC 33641]
          Length = 90

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+ +++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKVQAKAALESTLAAITESLKDGDPVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDSVK 90


>gi|330720371|gb|EGG98704.1| Integration host factor beta subunit [gamma proteobacterium
          IMCC2047]
          Length = 98

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+++I+ ++  LS KD    V T+ + +  S   GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIENIAAQQTQLSIKDVELSVKTIIDMMTQSLSSGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T  +V++  + V  FK    L++++ +    
Sbjct: 61 GRNPKTGDQVQLTGKYVPHFKPGKDLREQVDESREN 96


>gi|237653695|ref|YP_002890009.1| integration host factor subunit beta [Thauera sp. MZ1T]
 gi|237624942|gb|ACR01632.1| integration host factor, beta subunit [Thauera sp. MZ1T]
          Length = 95

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  +++ F  L  KD+   V  + + + D+  RG+ I+I  F +F +  +  R 
Sbjct: 1  MTKSELIAQLAERFPQLVAKDADYAVKMILDAMTDALARGDRIEIRGFGSFALNYRPPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V +  + V  FKA   L++R+
Sbjct: 61 GRNPKSGEKVLVPEKYVPHFKAGKELRERV 90


>gi|120611517|ref|YP_971195.1| integration host factor subunit alpha [Acidovorax citrulli AAC00-1]
 gi|120589981|gb|ABM33421.1| histone family protein DNA-binding protein [Acidovorax citrulli
           AAC00-1]
          Length = 122

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +  +T++ L + +  + GL++++S   +   F+ I    V G+ +KIS F  F ++ K  
Sbjct: 23  TPALTKAQLAELLFDQIGLNKRESKDMIDAFFDLIAQRLVDGQDVKISGFGNFQIRTKAP 82

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS+ LK++I   
Sbjct: 83  RPGRNPRTGEAIPIQARRVVTFHASTKLKEQIQSG 117


>gi|15804591|ref|NP_290632.1| transcriptional regulator HU subunit alpha [Escherichia coli
          O157:H7 EDL933]
 gi|15834177|ref|NP_312950.1| transcriptional regulator HU subunit alpha [Escherichia coli
          O157:H7 str. Sakai]
 gi|16131830|ref|NP_418428.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli str. K-12 substr. MG1655]
 gi|24115284|ref|NP_709794.1| transcriptional regulator HU subunit alpha [Shigella flexneri 2a
          str. 301]
 gi|26250771|ref|NP_756811.1| transcriptional regulator HU subunit alpha [Escherichia coli
          CFT073]
 gi|30064718|ref|NP_838889.1| transcriptional regulator HU subunit alpha [Shigella flexneri 2a
          str. 2457T]
 gi|74314494|ref|YP_312913.1| transcriptional regulator HU subunit alpha [Shigella sonnei
          Ss046]
 gi|82546342|ref|YP_410289.1| transcriptional regulator HU subunit alpha [Shigella boydii
          Sb227]
 gi|82778824|ref|YP_405173.1| transcriptional regulator HU subunit alpha [Shigella dysenteriae
          Sd197]
 gi|89110038|ref|AP_003818.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli str. K-12 substr. W3110]
 gi|91212793|ref|YP_542779.1| transcriptional regulator HU subunit alpha [Escherichia coli
          UTI89]
 gi|110644335|ref|YP_672065.1| transcriptional regulator HU subunit alpha [Escherichia coli 536]
 gi|110807850|ref|YP_691370.1| transcriptional regulator HU subunit alpha [Shigella flexneri 5
          str. 8401]
 gi|117626262|ref|YP_859585.1| transcriptional regulator HU subunit alpha [Escherichia coli APEC
          O1]
 gi|157157657|ref|YP_001465495.1| transcriptional regulator HU subunit alpha [Escherichia coli
          E24377A]
 gi|157163469|ref|YP_001460787.1| transcriptional regulator HU subunit alpha [Escherichia coli HS]
 gi|168752035|ref|ZP_02777057.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4113]
 gi|168758604|ref|ZP_02783611.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4401]
 gi|168764580|ref|ZP_02789587.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4501]
 gi|168771472|ref|ZP_02796479.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4486]
 gi|168777387|ref|ZP_02802394.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4196]
 gi|168780385|ref|ZP_02805392.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4076]
 gi|168790360|ref|ZP_02815367.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC869]
 gi|168798366|ref|ZP_02823373.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC508]
 gi|170021997|ref|YP_001726951.1| transcriptional regulator HU subunit alpha [Escherichia coli ATCC
          8739]
 gi|170083461|ref|YP_001732781.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli str. K-12 substr. DH10B]
 gi|170682013|ref|YP_001746384.1| transcriptional regulator HU subunit alpha [Escherichia coli
          SMS-3-5]
 gi|170770125|ref|ZP_02904578.1| DNA-binding protein HU-alpha [Escherichia albertii TW07627]
 gi|187733664|ref|YP_001882686.1| transcriptional regulator HU subunit alpha [Shigella boydii CDC
          3083-94]
 gi|188494754|ref|ZP_03002024.1| DNA-binding protein HU-alpha [Escherichia coli 53638]
 gi|191168661|ref|ZP_03030442.1| DNA-binding protein HU-alpha [Escherichia coli B7A]
 gi|191174297|ref|ZP_03035805.1| DNA-binding protein HU-alpha [Escherichia coli F11]
 gi|193066426|ref|ZP_03047473.1| DNA-binding protein HU-alpha [Escherichia coli E22]
 gi|193067891|ref|ZP_03048857.1| DNA-binding protein HU-alpha [Escherichia coli E110019]
 gi|194429963|ref|ZP_03062472.1| DNA-binding protein HU-alpha [Escherichia coli B171]
 gi|194434756|ref|ZP_03067007.1| DNA-binding protein HU-alpha [Shigella dysenteriae 1012]
 gi|194439785|ref|ZP_03071852.1| DNA-binding protein HU-alpha [Escherichia coli 101-1]
 gi|195939626|ref|ZP_03085008.1| transcriptional regulator HU subunit alpha [Escherichia coli
          O157:H7 str. EC4024]
 gi|208808153|ref|ZP_03250490.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4206]
 gi|208813268|ref|ZP_03254597.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4045]
 gi|208820185|ref|ZP_03260505.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4042]
 gi|209397488|ref|YP_002273516.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4115]
 gi|209921479|ref|YP_002295563.1| transcriptional regulator HU subunit alpha [Escherichia coli
          SE11]
 gi|215489332|ref|YP_002331763.1| transcriptional regulator HU subunit alpha [Escherichia coli
          O127:H6 str. E2348/69]
 gi|217324933|ref|ZP_03441017.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          TW14588]
 gi|218551016|ref|YP_002384807.1| transcriptional regulator HU subunit alpha [Escherichia
          fergusonii ATCC 35469]
 gi|218556555|ref|YP_002389469.1| transcriptional regulator HU subunit alpha [Escherichia coli
          IAI1]
 gi|218561066|ref|YP_002393979.1| transcriptional regulator HU subunit alpha [Escherichia coli S88]
 gi|218692281|ref|YP_002400493.1| transcriptional regulator HU subunit alpha [Escherichia coli
          ED1a]
 gi|218697708|ref|YP_002405375.1| transcriptional regulator HU subunit alpha [Escherichia coli
          55989]
 gi|218707619|ref|YP_002415138.1| transcriptional regulator HU subunit alpha [Escherichia coli
          UMN026]
 gi|227885470|ref|ZP_04003275.1| DNA-binding protein HU-alpha [Escherichia coli 83972]
 gi|237702767|ref|ZP_04533248.1| transcriptional regulator HU subunit alpha [Escherichia sp.
          3_2_53FAA]
 gi|238903057|ref|YP_002928853.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli BW2952]
 gi|253775370|ref|YP_003038201.1| transcriptional regulator HU subunit alpha [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|254039257|ref|ZP_04873306.1| DNA-binding protein HU-alpha [Escherichia sp. 1_1_43]
 gi|254163942|ref|YP_003047050.1| transcriptional regulator HU subunit alpha [Escherichia coli B
          str. REL606]
 gi|254795998|ref|YP_003080835.1| transcriptional regulator HU subunit alpha [Escherichia coli
          O157:H7 str. TW14359]
 gi|256021679|ref|ZP_05435544.1| transcriptional regulator HU subunit alpha [Shigella sp. D9]
 gi|256026316|ref|ZP_05440181.1| transcriptional regulator HU subunit alpha [Escherichia sp.
          4_1_40B]
 gi|260846800|ref|YP_003224578.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli O103:H2 str. 12009]
 gi|260858110|ref|YP_003232001.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli O26:H11 str. 11368]
 gi|260870711|ref|YP_003237113.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli O111:H- str. 11128]
 gi|261227288|ref|ZP_05941569.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257035|ref|ZP_05949568.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli O157:H7 str. FRIK966]
 gi|291285415|ref|YP_003502233.1| DNA-binding protein HU-alpha [Escherichia coli O55:H7 str.
          CB9615]
 gi|293407617|ref|ZP_06651535.1| transcriptional regulator HU subunit beta [Escherichia coli
          FVEC1412]
 gi|293413436|ref|ZP_06656096.1| transcriptional regulator HU subunit beta [Escherichia coli B354]
 gi|293417502|ref|ZP_06660125.1| DNA-binding protein HU-alpha [Escherichia coli B185]
 gi|293474307|ref|ZP_06664716.1| transcriptional regulator HU subunit beta [Escherichia coli B088]
 gi|298383365|ref|ZP_06992957.1| transcriptional regulator HU subunit beta [Escherichia coli
          FVEC1302]
 gi|300819812|ref|ZP_07099999.1| DNA-binding protein HU [Escherichia coli MS 107-1]
 gi|300824619|ref|ZP_07104727.1| DNA-binding protein HU [Escherichia coli MS 119-7]
 gi|300897585|ref|ZP_07115994.1| DNA-binding protein HU [Escherichia coli MS 198-1]
 gi|300907554|ref|ZP_07125192.1| DNA-binding protein HU [Escherichia coli MS 84-1]
 gi|300919418|ref|ZP_07135922.1| DNA-binding protein HU [Escherichia coli MS 115-1]
 gi|300925869|ref|ZP_07141712.1| DNA-binding protein HU [Escherichia coli MS 182-1]
 gi|300928819|ref|ZP_07144327.1| DNA-binding protein HU [Escherichia coli MS 187-1]
 gi|300938775|ref|ZP_07153488.1| DNA-binding protein HU [Escherichia coli MS 21-1]
 gi|300947393|ref|ZP_07161586.1| DNA-binding protein HU [Escherichia coli MS 116-1]
 gi|300954769|ref|ZP_07167199.1| DNA-binding protein HU [Escherichia coli MS 175-1]
 gi|300979674|ref|ZP_07174646.1| DNA-binding protein HU [Escherichia coli MS 45-1]
 gi|300985441|ref|ZP_07177444.1| DNA-binding protein HU [Escherichia coli MS 200-1]
 gi|301019441|ref|ZP_07183614.1| DNA-binding protein HU [Escherichia coli MS 69-1]
 gi|301023370|ref|ZP_07187160.1| DNA-binding protein HU [Escherichia coli MS 196-1]
 gi|301047735|ref|ZP_07194793.1| DNA-binding protein HU [Escherichia coli MS 185-1]
 gi|301302187|ref|ZP_07208319.1| DNA-binding protein HU [Escherichia coli MS 124-1]
 gi|301325708|ref|ZP_07219167.1| DNA-binding protein HU [Escherichia coli MS 78-1]
 gi|301645744|ref|ZP_07245665.1| DNA-binding protein HU [Escherichia coli MS 146-1]
 gi|306812015|ref|ZP_07446223.1| transcriptional regulator HU subunit alpha [Escherichia coli
          NC101]
 gi|307140692|ref|ZP_07500048.1| transcriptional regulator HU subunit alpha [Escherichia coli
          H736]
 gi|307315027|ref|ZP_07594613.1| histone family protein DNA-binding protein [Escherichia coli W]
 gi|309783956|ref|ZP_07678601.1| DNA-binding protein HU-alpha [Shigella dysenteriae 1617]
 gi|309797704|ref|ZP_07692090.1| DNA-binding protein HU [Escherichia coli MS 145-7]
 gi|312965347|ref|ZP_07779580.1| DNA-binding protein HU-alpha [Escherichia coli 2362-75]
 gi|312974214|ref|ZP_07788384.1| DNA-binding protein HU-alpha [Escherichia coli 1827-70]
 gi|331644736|ref|ZP_08345854.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H736]
 gi|331649853|ref|ZP_08350931.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli M605]
 gi|331655700|ref|ZP_08356690.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli M718]
 gi|331660560|ref|ZP_08361493.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli
          TA206]
 gi|331665656|ref|ZP_08366552.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli
          TA143]
 gi|331670854|ref|ZP_08371689.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli
          TA271]
 gi|331675486|ref|ZP_08376235.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli
          TA280]
 gi|331680123|ref|ZP_08380784.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H591]
 gi|331685742|ref|ZP_08386324.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H299]
 gi|332282922|ref|ZP_08395335.1| HU DNA-binding transcriptional regulator alpha subunit [Shigella
          sp. D9]
 gi|82581650|sp|P0ACF2|DBHA_ECO57 RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2;
          AltName: Full=NS2
 gi|82581651|sp|P0ACF1|DBHA_ECOL6 RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2;
          AltName: Full=NS2
 gi|82581652|sp|P0ACF0|DBHA_ECOLI RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2;
          AltName: Full=NS2
 gi|82581653|sp|P0ACF3|DBHA_SHIFL RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2;
          AltName: Full=NS2
 gi|34810779|pdb|1MUL|A Chain A, Crystal Structure Of The E. Coli Hu Alpha2 Protein
 gi|134105078|pdb|2O97|A Chain A, Crystal Structure Of E. Coli Hu Heterodimer
 gi|12518929|gb|AAG59197.1|AE005631_12 DNA-binding protein HU-alpha (HU-2) [Escherichia coli O157:H7
          str. EDL933]
 gi|26111202|gb|AAN83385.1|AE016770_185 DNA-binding protein HU-alpha [Escherichia coli CFT073]
 gi|41765|emb|CAA29412.1| unnamed protein product [Escherichia coli]
 gi|396339|gb|AAC43098.1| histonelike DNA-binding protein HU-alpha (NS2) (HU-2)
          [Escherichia coli str. K-12 substr. MG1655]
 gi|1790433|gb|AAC76974.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli str. K-12 substr. MG1655]
 gi|13364399|dbj|BAB38346.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          Sakai]
 gi|24054578|gb|AAN45501.1| DNA-binding protein HU-alpha (HU-2) [Shigella flexneri 2a str.
          301]
 gi|30042978|gb|AAP18700.1| DNA-binding protein HU-alpha (HU-2) [Shigella flexneri 2a str.
          2457T]
 gi|73857971|gb|AAZ90678.1| DNA-binding protein HU-alpha [Shigella sonnei Ss046]
 gi|81242972|gb|ABB63682.1| DNA-binding protein HU-alpha [Shigella dysenteriae Sd197]
 gi|81247753|gb|ABB68461.1| DNA-binding protein HU-alpha [Shigella boydii Sb227]
 gi|85676069|dbj|BAE77319.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli str. K12 substr. W3110]
 gi|91074367|gb|ABE09248.1| DNA-binding protein HU-alpha (HU-2) [Escherichia coli UTI89]
 gi|110345927|gb|ABG72164.1| DNA-binding protein HU-alpha [Escherichia coli 536]
 gi|110617398|gb|ABF06065.1| DNA-binding protein HU-alpha (HU-2) [Shigella flexneri 5 str.
          8401]
 gi|115515386|gb|ABJ03461.1| DNA-binding protein HU-alpha [Escherichia coli APEC O1]
 gi|157069149|gb|ABV08404.1| DNA-binding protein HU-alpha [Escherichia coli HS]
 gi|157079687|gb|ABV19395.1| DNA-binding protein HU-alpha [Escherichia coli E24377A]
 gi|169756925|gb|ACA79624.1| histone family protein DNA-binding protein [Escherichia coli ATCC
          8739]
 gi|169891296|gb|ACB05003.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli str. K-12 substr. DH10B]
 gi|170121007|gb|EDS89938.1| DNA-binding protein HU-alpha [Escherichia albertii TW07627]
 gi|170519731|gb|ACB17909.1| DNA-binding protein HU-alpha [Escherichia coli SMS-3-5]
 gi|187430656|gb|ACD09930.1| DNA-binding protein HU-alpha [Shigella boydii CDC 3083-94]
 gi|187767348|gb|EDU31192.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4196]
 gi|188014035|gb|EDU52157.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4113]
 gi|188489953|gb|EDU65056.1| DNA-binding protein HU-alpha [Escherichia coli 53638]
 gi|189001743|gb|EDU70729.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4076]
 gi|189354599|gb|EDU73018.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4401]
 gi|189359757|gb|EDU78176.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4486]
 gi|189365455|gb|EDU83871.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4501]
 gi|189370167|gb|EDU88583.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC869]
 gi|189379196|gb|EDU97612.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC508]
 gi|190901301|gb|EDV61069.1| DNA-binding protein HU-alpha [Escherichia coli B7A]
 gi|190905429|gb|EDV65060.1| DNA-binding protein HU-alpha [Escherichia coli F11]
 gi|192925950|gb|EDV80597.1| DNA-binding protein HU-alpha [Escherichia coli E22]
 gi|192958866|gb|EDV89303.1| DNA-binding protein HU-alpha [Escherichia coli E110019]
 gi|194411992|gb|EDX28305.1| DNA-binding protein HU-alpha [Escherichia coli B171]
 gi|194416980|gb|EDX33098.1| DNA-binding protein HU-alpha [Shigella dysenteriae 1012]
 gi|194421282|gb|EDX37302.1| DNA-binding protein HU-alpha [Escherichia coli 101-1]
 gi|208727954|gb|EDZ77555.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4206]
 gi|208734545|gb|EDZ83232.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4045]
 gi|208740308|gb|EDZ87990.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4042]
 gi|209158888|gb|ACI36321.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC4115]
 gi|209751678|gb|ACI74146.1| DNA-binding protein HU-alpha [Escherichia coli]
 gi|209751680|gb|ACI74147.1| DNA-binding protein HU-alpha [Escherichia coli]
 gi|209751682|gb|ACI74148.1| DNA-binding protein HU-alpha [Escherichia coli]
 gi|209751684|gb|ACI74149.1| DNA-binding protein HU-alpha [Escherichia coli]
 gi|209751686|gb|ACI74150.1| DNA-binding protein HU-alpha [Escherichia coli]
 gi|209914738|dbj|BAG79812.1| DNA-binding protein [Escherichia coli SE11]
 gi|215267404|emb|CAS11855.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli O127:H6 str. E2348/69]
 gi|217321154|gb|EEC29578.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          TW14588]
 gi|218354440|emb|CAV01252.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli 55989]
 gi|218358557|emb|CAQ91205.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia fergusonii ATCC 35469]
 gi|218363324|emb|CAR00974.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli IAI1]
 gi|218367835|emb|CAR05630.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli S88]
 gi|218429845|emb|CAR10671.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli ED1a]
 gi|218434716|emb|CAR15648.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli UMN026]
 gi|222035711|emb|CAP78456.1| DNA-binding protein HU-alpha [Escherichia coli LF82]
 gi|226838492|gb|EEH70522.1| DNA-binding protein HU-alpha [Escherichia sp. 1_1_43]
 gi|226903080|gb|EEH89339.1| transcriptional regulator HU subunit alpha [Escherichia sp.
          3_2_53FAA]
 gi|227837544|gb|EEJ48010.1| DNA-binding protein HU-alpha [Escherichia coli 83972]
 gi|238861437|gb|ACR63435.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli BW2952]
 gi|242379531|emb|CAQ34347.1| transcriptional dual regulator HU-alpha (HU-2), subunit of HU
          transcriptional dual regulator [Escherichia coli
          BL21(DE3)]
 gi|253326414|gb|ACT31016.1| histone family protein DNA-binding protein [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253975843|gb|ACT41514.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli B str. REL606]
 gi|253979999|gb|ACT45669.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli BL21(DE3)]
 gi|254595398|gb|ACT74759.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli O157:H7 str. TW14359]
 gi|257756759|dbj|BAI28261.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli O26:H11 str. 11368]
 gi|257761947|dbj|BAI33444.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli O103:H2 str. 12009]
 gi|257767067|dbj|BAI38562.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli O111:H- str. 11128]
 gi|260451172|gb|ACX41594.1| histone family protein DNA-binding protein [Escherichia coli DH1]
 gi|281181064|dbj|BAI57394.1| DNA-binding protein [Escherichia coli SE15]
 gi|281603384|gb|ADA76368.1| DNA-binding protein HU-alpha [Shigella flexneri 2002017]
 gi|290765288|gb|ADD59249.1| DNA-binding protein HU-alpha [Escherichia coli O55:H7 str.
          CB9615]
 gi|291321337|gb|EFE60778.1| transcriptional regulator HU subunit beta [Escherichia coli B088]
 gi|291425385|gb|EFE98425.1| transcriptional regulator HU subunit beta [Escherichia coli
          FVEC1412]
 gi|291430829|gb|EFF03826.1| DNA-binding protein HU-alpha [Escherichia coli B185]
 gi|291468031|gb|EFF10530.1| transcriptional regulator HU subunit beta [Escherichia coli B354]
 gi|294490664|gb|ADE89420.1| DNA-binding protein HU-alpha [Escherichia coli IHE3034]
 gi|298276244|gb|EFI17765.1| transcriptional regulator HU subunit beta [Escherichia coli
          FVEC1302]
 gi|299880890|gb|EFI89101.1| DNA-binding protein HU [Escherichia coli MS 196-1]
 gi|300300380|gb|EFJ56765.1| DNA-binding protein HU [Escherichia coli MS 185-1]
 gi|300306533|gb|EFJ61053.1| DNA-binding protein HU [Escherichia coli MS 200-1]
 gi|300318268|gb|EFJ68052.1| DNA-binding protein HU [Escherichia coli MS 175-1]
 gi|300358661|gb|EFJ74531.1| DNA-binding protein HU [Escherichia coli MS 198-1]
 gi|300399256|gb|EFJ82794.1| DNA-binding protein HU [Escherichia coli MS 69-1]
 gi|300400721|gb|EFJ84259.1| DNA-binding protein HU [Escherichia coli MS 84-1]
 gi|300409458|gb|EFJ92996.1| DNA-binding protein HU [Escherichia coli MS 45-1]
 gi|300413511|gb|EFJ96821.1| DNA-binding protein HU [Escherichia coli MS 115-1]
 gi|300418059|gb|EFK01370.1| DNA-binding protein HU [Escherichia coli MS 182-1]
 gi|300452997|gb|EFK16617.1| DNA-binding protein HU [Escherichia coli MS 116-1]
 gi|300456285|gb|EFK19778.1| DNA-binding protein HU [Escherichia coli MS 21-1]
 gi|300463200|gb|EFK26693.1| DNA-binding protein HU [Escherichia coli MS 187-1]
 gi|300522868|gb|EFK43937.1| DNA-binding protein HU [Escherichia coli MS 119-7]
 gi|300527633|gb|EFK48695.1| DNA-binding protein HU [Escherichia coli MS 107-1]
 gi|300842350|gb|EFK70110.1| DNA-binding protein HU [Escherichia coli MS 124-1]
 gi|300847497|gb|EFK75257.1| DNA-binding protein HU [Escherichia coli MS 78-1]
 gi|301075993|gb|EFK90799.1| DNA-binding protein HU [Escherichia coli MS 146-1]
 gi|305854620|gb|EFM55056.1| transcriptional regulator HU subunit alpha [Escherichia coli
          NC101]
 gi|306905532|gb|EFN36065.1| histone family protein DNA-binding protein [Escherichia coli W]
 gi|307556143|gb|ADN48918.1| DNA-binding protein HU-alpha [Escherichia coli ABU 83972]
 gi|307628383|gb|ADN72687.1| transcriptional regulator HU subunit alpha [Escherichia coli
          UM146]
 gi|308118716|gb|EFO55978.1| DNA-binding protein HU [Escherichia coli MS 145-7]
 gi|308928327|gb|EFP73789.1| DNA-binding protein HU-alpha [Shigella dysenteriae 1617]
 gi|309704416|emb|CBJ03765.1| DNA-binding protein HU-alpha [Escherichia coli ETEC H10407]
 gi|310331381|gb|EFP98646.1| DNA-binding protein HU-alpha [Escherichia coli 1827-70]
 gi|312290021|gb|EFR17908.1| DNA-binding protein HU-alpha [Escherichia coli 2362-75]
 gi|312948574|gb|ADR29401.1| transcriptional regulator HU subunit alpha [Escherichia coli
          O83:H1 str. NRG 857C]
 gi|313648650|gb|EFS13090.1| DNA-binding protein HU-alpha [Shigella flexneri 2a str. 2457T]
 gi|315063325|gb|ADT77652.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Escherichia coli W]
 gi|315138557|dbj|BAJ45716.1| DNA-binding protein HU-alpha [Escherichia coli DH1]
 gi|315252732|gb|EFU32700.1| DNA-binding protein HU [Escherichia coli MS 85-1]
 gi|315288345|gb|EFU47744.1| DNA-binding protein HU [Escherichia coli MS 110-3]
 gi|315294343|gb|EFU53694.1| DNA-binding protein HU [Escherichia coli MS 153-1]
 gi|315300743|gb|EFU59968.1| DNA-binding protein HU [Escherichia coli MS 16-3]
 gi|315617364|gb|EFU97970.1| DNA-binding protein HU-alpha [Escherichia coli 3431]
 gi|320172738|gb|EFW47972.1| DNA-binding protein HU-alpha [Shigella dysenteriae CDC 74-1112]
 gi|320179537|gb|EFW54488.1| DNA-binding protein HU-alpha [Shigella boydii ATCC 9905]
 gi|320185960|gb|EFW60708.1| DNA-binding protein HU-alpha [Shigella flexneri CDC 796-83]
 gi|320190903|gb|EFW65553.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
          EC1212]
 gi|320197105|gb|EFW71723.1| DNA-binding protein HU-alpha [Escherichia coli WV_060327]
 gi|320200160|gb|EFW74749.1| DNA-binding protein HU-alpha [Escherichia coli EC4100B]
 gi|320639091|gb|EFX08731.1| transcriptional regulator HU subunit alpha [Escherichia coli
          O157:H7 str. G5101]
 gi|320644485|gb|EFX13548.1| transcriptional regulator HU subunit alpha [Escherichia coli
          O157:H- str. 493-89]
 gi|320649804|gb|EFX18325.1| transcriptional regulator HU subunit alpha [Escherichia coli
          O157:H- str. H 2687]
 gi|320655137|gb|EFX23093.1| transcriptional regulator HU subunit alpha [Escherichia coli
          O55:H7 str. 3256-97 TW 07815]
 gi|320660781|gb|EFX28235.1| transcriptional regulator HU subunit alpha [Escherichia coli
          O55:H7 str. USDA 5905]
 gi|320665899|gb|EFX32930.1| transcriptional regulator HU subunit alpha [Escherichia coli
          O157:H7 str. LSU-61]
 gi|323155552|gb|EFZ41729.1| DNA-binding protein HU-alpha [Escherichia coli EPECa14]
 gi|323161308|gb|EFZ47217.1| DNA-binding protein HU-alpha [Escherichia coli E128010]
 gi|323167470|gb|EFZ53178.1| DNA-binding protein HU-alpha [Shigella sonnei 53G]
 gi|323174488|gb|EFZ60113.1| DNA-binding protein HU-alpha [Escherichia coli LT-68]
 gi|323177555|gb|EFZ63140.1| DNA-binding protein HU-alpha [Escherichia coli 1180]
 gi|323182099|gb|EFZ67509.1| DNA-binding protein HU-alpha [Escherichia coli 1357]
 gi|323190143|gb|EFZ75421.1| DNA-binding protein HU-alpha [Escherichia coli RN587/1]
 gi|323380611|gb|ADX52879.1| histone family protein DNA-binding protein [Escherichia coli
          KO11]
 gi|323933958|gb|EGB30432.1| bacterial DNA-binding protein [Escherichia coli E1520]
 gi|323938883|gb|EGB35103.1| DNA-binding protein [Escherichia coli E482]
 gi|323943611|gb|EGB39719.1| bacterial DNA-binding protein [Escherichia coli H120]
 gi|323948829|gb|EGB44726.1| DNA-binding protein [Escherichia coli H252]
 gi|323953788|gb|EGB49595.1| DNA-binding protein [Escherichia coli H263]
 gi|323958927|gb|EGB54602.1| DNA-binding protein [Escherichia coli H489]
 gi|323963781|gb|EGB59280.1| DNA-binding protein [Escherichia coli M863]
 gi|323969074|gb|EGB64382.1| DNA-binding protein [Escherichia coli TA007]
 gi|323974200|gb|EGB69332.1| DNA-binding protein [Escherichia coli TW10509]
 gi|324009499|gb|EGB78718.1| DNA-binding protein HU [Escherichia coli MS 57-2]
 gi|324015254|gb|EGB84473.1| DNA-binding protein HU [Escherichia coli MS 60-1]
 gi|324017347|gb|EGB86566.1| DNA-binding protein HU [Escherichia coli MS 117-3]
 gi|324110912|gb|EGC04904.1| DNA-binding protein [Escherichia fergusonii B253]
 gi|324115432|gb|EGC09377.1| DNA-binding protein [Escherichia coli E1167]
 gi|325499268|gb|EGC97127.1| transcriptional regulator HU subunit alpha [Escherichia
          fergusonii ECD227]
 gi|326347149|gb|EGD70879.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. 1125]
 gi|326347600|gb|EGD71322.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. 1044]
 gi|330908315|gb|EGH36834.1| DNA-binding protein HU-alpha [Escherichia coli AA86]
 gi|331036036|gb|EGI08273.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H736]
 gi|331041319|gb|EGI13471.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli M605]
 gi|331046625|gb|EGI18712.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli M718]
 gi|331052343|gb|EGI24381.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli
          TA206]
 gi|331057174|gb|EGI29166.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli
          TA143]
 gi|331061942|gb|EGI33866.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli
          TA271]
 gi|331067364|gb|EGI38770.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli
          TA280]
 gi|331072278|gb|EGI43612.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H591]
 gi|331077052|gb|EGI48268.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H299]
 gi|332083889|gb|EGI89102.1| DNA-binding protein HU-alpha [Shigella boydii 5216-82]
 gi|332085398|gb|EGI90568.1| DNA-binding protein HU-alpha [Shigella dysenteriae 155-74]
 gi|332092305|gb|EGI97380.1| DNA-binding protein HU-alpha [Shigella boydii 3594-74]
 gi|332105274|gb|EGJ08620.1| HU DNA-binding transcriptional regulator alpha subunit [Shigella
          sp. D9]
 gi|332345990|gb|AEE59324.1| DNA-binding protein HU-alpha [Escherichia coli UMNK88]
 gi|332749197|gb|EGJ79619.1| DNA-binding protein HU-alpha [Shigella flexneri 2747-71]
 gi|332751446|gb|EGJ81848.1| DNA-binding protein HU-alpha [Shigella flexneri 4343-70]
 gi|332762844|gb|EGJ93103.1| DNA-binding protein HU-&alpha [Shigella flexneri 2930-71]
 gi|332765544|gb|EGJ95758.1| DNA-binding protein HU-alpha [Shigella flexneri K-671]
 gi|332998960|gb|EGK18550.1| DNA-binding protein HU-alpha [Shigella flexneri K-218]
 gi|333010733|gb|EGK30161.1| DNA-binding protein HU-alpha [Shigella flexneri VA-6]
 gi|333014358|gb|EGK33711.1| DNA-binding protein HU-alpha [Shigella flexneri K-304]
          Length = 90

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|320540340|ref|ZP_08039992.1| putative HU, DNA-binding transcriptional regulator, beta subunit
          [Serratia symbiotica str. Tucson]
 gi|320029660|gb|EFW11687.1| putative HU, DNA-binding transcriptional regulator, beta subunit
          [Serratia symbiotica str. Tucson]
          Length = 90

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + DS   G+ + +  F TF V+++ +R G
Sbjct: 1  MNKSQLIDKIATGADISKAVAGRALDAVIVSVTDSLKAGDDVALVGFGTFTVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F+A+  LK  + 
Sbjct: 61 RNPQTGKEITIAAAKVPAFRAAKALKDAVN 90


>gi|317494900|ref|ZP_07953310.1| DNA-binding protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917088|gb|EFV38437.1| DNA-binding protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 90

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIAEKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGMEIKIAAANVPAFVSGKALKDAVK 90


>gi|258405990|ref|YP_003198732.1| histone family protein DNA-binding protein [Desulfohalobium
          retbaense DSM 5692]
 gi|257798217|gb|ACV69154.1| histone family protein DNA-binding protein [Desulfohalobium
          retbaense DSM 5692]
          Length = 91

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 53/91 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LVK+++    L+++++   V T F+ I D+  +G+ ++I  F +F +K      G
Sbjct: 1  MNKSELVKALADAHNLTQEEAKDMVNTFFDSIKDALEQGDRVEIRGFGSFKIKHYEGYKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + V + P+R+  F+A   LK+ +  
Sbjct: 61 RNPKTGEVVDVQPKRLPFFRAGKGLKEHLNK 91


>gi|153812530|ref|ZP_01965198.1| hypothetical protein RUMOBE_02929 [Ruminococcus obeum ATCC 29174]
 gi|149831455|gb|EDM86543.1| hypothetical protein RUMOBE_02929 [Ruminococcus obeum ATCC 29174]
          Length = 91

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++KE  LS+KD    + +  + +     +G  I++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAMAKETNLSKKDVEAVLKSFTDVVASELKKGGKIQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + +KI   +   FKA   LK  + +
Sbjct: 61 RNPQTGETMKIAASKAPKFKAGKALKDMVNE 91


>gi|228912344|ref|ZP_04076038.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
 gi|228847292|gb|EEM92252.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
          Length = 93

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 52/92 (56%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +++L K ++++  L++KD+      + + I  +    E ++I  F TF V+++ +R
Sbjct: 2  QKMNKTELTKVVAEKAVLTQKDADAATQAVLDTITSALANEEKVQILGFGTFEVRERSAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E++I   +   FKA   LK+ + 
Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93


>gi|163750455|ref|ZP_02157694.1| DNA-binding protein, HU family [Shewanella benthica KT99]
 gi|161329776|gb|EDQ00764.1| DNA-binding protein, HU family [Shewanella benthica KT99]
          Length = 91

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  +++   L++ ++ R + +    I  +   G+ I I  F +F    + +R+G
Sbjct: 1  MNKTELVAKMAENADLTKTEAARALKSFEETITAALKSGDKISIIGFGSFETTNRAARIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E++I    V  FKA   LK  +  
Sbjct: 61 RNPQTGKEIQIPAATVPKFKAGKTLKDSVNQ 91


>gi|160894582|ref|ZP_02075358.1| hypothetical protein CLOL250_02134 [Clostridium sp. L2-50]
 gi|156863893|gb|EDO57324.1| hypothetical protein CLOL250_02134 [Clostridium sp. L2-50]
          Length = 90

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++  LS+KD+ + +    + + +   +GE +++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAMAEKTELSKKDAEKALKAFTDVVAEELKKGEKVQLVGFGTFEVAEREAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I   +   FKA   LK  + 
Sbjct: 61 RNPRTGETMTIAASKSPKFKAGKALKDSLN 90


>gi|33597659|ref|NP_885302.1| integration host factor beta-subunit [Bordetella parapertussis
           12822]
 gi|81713696|sp|Q7W605|IHFB_BORPA RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|33574087|emb|CAE38412.1| integration host factor beta-subunit [Bordetella parapertussis]
          Length = 119

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 59/103 (57%), Gaps = 3/103 (2%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+ +++  +  L+ +D+   V T+ + +  +   G+ I+I  F +F + Q+  R+
Sbjct: 1   MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN ++ ++V +  ++V  FKA   L++R+  D+ G     D 
Sbjct: 61  GRNPKSGEQVLVPGKQVPHFKAGKELRERV--DLVGNDQGDDS 101


>gi|294083743|ref|YP_003550500.1| integration host factor subunit alpha [Candidatus
          Puniceispirillum marinum IMCC1322]
 gi|292663315|gb|ADE38416.1| integration host factor, alpha subunit [Candidatus
          Puniceispirillum marinum IMCC1322]
          Length = 97

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/93 (48%), Positives = 60/93 (64%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSKT+TR+DL +++ +  GLSR +S+  V  +  EIC      E +K+SSF TF V+ K 
Sbjct: 1  MSKTLTRADLTEAVYRSVGLSRNESSDLVEAVIEEICSCLESNEEVKLSSFGTFSVQSKT 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RVGRN +T  E  I PRRV+ FK S ILK R+
Sbjct: 61 ERVGRNPKTGVEAVITPRRVLSFKPSHILKNRV 93


>gi|218780729|ref|YP_002432047.1| histone family protein DNA-binding protein [Desulfatibacillum
          alkenivorans AK-01]
 gi|218762113|gb|ACL04579.1| histone family protein DNA-binding protein [Desulfatibacillum
          alkenivorans AK-01]
          Length = 89

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL++ ++K  G ++KD+   V  +F  I ++  + +A+ +  F TF V ++ +R G
Sbjct: 1  MNKADLIEEVAKVLG-TKKDAQAAVDCVFATISEALKKDDAVTLVGFGTFKVDKRQARKG 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I  R V  F     LK  + 
Sbjct: 60 RNPRTGEALDIPARNVPKFNPGKALKDAVN 89


>gi|332290335|ref|YP_004421187.1| integration host factor subunit alpha [Gallibacterium anatis
          UMN179]
 gi|330433231|gb|AEC18290.1| integration host factor subunit alpha [Gallibacterium anatis
          UMN179]
          Length = 98

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 55/95 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ +L +++ ++F L++ D+   V + F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  TLTKVELAENLIEKFNLNKNDAKELVESFFEEIRQALESGEEVKLSGFGNFELRDKTPRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T + V I  RRVVVFKA   L+ R+     
Sbjct: 62 GRNPKTGEYVPITARRVVVFKAGQKLRARVEKSKP 96


>gi|269467813|gb|EEZ79565.1| histone family protein [uncultured SUP05 cluster bacterium]
          Length = 90

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    LS+ D+ R +      I  +   G+ ++I+ F +F V+ + +R G
Sbjct: 1  MNKSELIDAIASAANLSKADAGRALNATTGAITSALSGGDGVQITGFGSFVVRARAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   ++I   +   FKA   LK+ + 
Sbjct: 61 RNPQTGATIQIKASKNAAFKAGKALKEAVN 90


>gi|160935949|ref|ZP_02083323.1| hypothetical protein CLOBOL_00844 [Clostridium bolteae ATCC
          BAA-613]
 gi|158441191|gb|EDP18908.1| hypothetical protein CLOBOL_00844 [Clostridium bolteae ATCC
          BAA-613]
          Length = 91

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  LS+KD+ + V    + + +  V+G  +++  F TF V ++ +R G
Sbjct: 1  MNKTELIAAVAEKAELSKKDAEKAVKAFTDAVSEELVKGGKVQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + + I+  +   FKA   LK  +  
Sbjct: 61 RNPKTGKTMTIEASKTPKFKAGKALKDEVNK 91


>gi|304320496|ref|YP_003854139.1| integration host factor beta chain [Parvularcula bermudensis
           HTCC2503]
 gi|303299398|gb|ADM08997.1| integration host factor beta chain [Parvularcula bermudensis
           HTCC2503]
          Length = 113

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 62/112 (55%), Gaps = 3/112 (2%)

Query: 5   ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV+ ++ +   L  KD  + V+ +F+ I  +  +G+ +++  F TF VK + +R 
Sbjct: 1   MIKSELVQQLAAENPHLFMKDVEKLVSAIFDHISTALEQGDRVELRGFGTFSVKYREART 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD--DMRGRKCNKDDVTSPSGS 113
           GRN +T + V+++ + V  FKA   +++R+    D+      + DV   + S
Sbjct: 61  GRNPRTGESVEVEEKWVPFFKAGKEMRERLNKKTDLVAPMMAQQDVARHAES 112


>gi|330445636|ref|ZP_08309288.1| integration host factor, beta subunit [Photobacterium leiognathi
          subsp. mandapamensis svers.1.1.]
 gi|328489827|dbj|GAA03785.1| integration host factor, beta subunit [Photobacterium leiognathi
          subsp. mandapamensis svers.1.1.]
          Length = 96

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + S++  LS K     +  +   + ++   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLCSQQTHLSAKQVEDAIKDILENMANTLAEGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T  +V++D + V  FK    L+ R+   +  
Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRVNASIAA 96


>gi|294634213|ref|ZP_06712759.1| DNA-binding protein HU-beta [Edwardsiella tarda ATCC 23685]
 gi|291092358|gb|EFE24919.1| DNA-binding protein HU-beta [Edwardsiella tarda ATCC 23685]
          Length = 90

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKTQAKAALESTLAAITESLKAGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|269137541|ref|YP_003294241.1| transcriptional regulator HU subunit alpha [Edwardsiella tarda
          EIB202]
 gi|267983201|gb|ACY83030.1| transcriptional regulator HU subunit alpha [Edwardsiella tarda
          EIB202]
 gi|304557615|gb|ADM40279.1| DNA-binding protein HU-alpha [Edwardsiella tarda FL6-60]
          Length = 90

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKTQAKAALESTLAAITESLKAGDAVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGNEIKIAAANVPAFVSGKALKDAVK 90


>gi|238756047|ref|ZP_04617370.1| DNA-binding protein HU-alpha [Yersinia ruckeri ATCC 29473]
 gi|238705714|gb|EEP98108.1| DNA-binding protein HU-alpha [Yersinia ruckeri ATCC 29473]
          Length = 90

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L++ I+ +  LS+  +   + +    I +S   GE +++  F TF V  +  R G
Sbjct: 1  MNKTQLIEVIADKADLSKTQAKAALESTLAAITESLKDGEQVQLVGFGTFKVNHRNERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDSVK 90


>gi|329122306|ref|ZP_08250894.1| DNA-binding protein HU [Haemophilus aegyptius ATCC 11116]
 gi|327473867|gb|EGF19284.1| DNA-binding protein HU [Haemophilus aegyptius ATCC 11116]
          Length = 90

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+    L++K +   +    + I  S   GE +++  F TF V ++ +R G
Sbjct: 1  MNKTNLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I   +V  F +   LK  I 
Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAIK 90


>gi|90420560|ref|ZP_01228467.1| integration host factor, beta subunit [Aurantimonas manganoxydans
          SI85-9A1]
 gi|90335288|gb|EAS49041.1| integration host factor, beta subunit [Aurantimonas manganoxydans
          SI85-9A1]
          Length = 93

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV++I+ +   L ++D    V  +F+EI  +      +++  F  F VK +  R 
Sbjct: 1  MIKSELVQAIATRNPHLYQRDVETIVNAIFDEITGALCESNRVELRGFGAFSVKHRPPRS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V ++ + V  FKA   L++R+  D
Sbjct: 61 GRNPRTGEAVAVEEKWVPFFKAGKELRERLNAD 93


>gi|310766093|gb|ADP11043.1| DNA-binding protein HU-alpha [Erwinia sp. Ejp617]
          Length = 90

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V Q+  R+G
Sbjct: 1  MNKTQLIDIIADKADLSKTQAKAALDSTLAAITESLKEGDAVQLVGFGTFKVNQRAGRIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  E++I    V  F +   LK+ + 
Sbjct: 61 RNPKTGNEIQIAASTVPAFTSGKALKEAVK 90


>gi|170720566|ref|YP_001748254.1| integration host factor subunit beta [Pseudomonas putida W619]
 gi|226709800|sp|B1J5H2|IHFB_PSEPW RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|169758569|gb|ACA71885.1| integration host factor, beta subunit [Pseudomonas putida W619]
          Length = 98

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I    GL S KD    + T+  ++      G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T Q V+++ + V  FK    L+ R+ ++  
Sbjct: 61 GRNPKTGQSVELEGKFVPHFKPGKELRDRVNEEEH 95


>gi|253701606|ref|YP_003022795.1| histone family protein DNA-binding protein [Geobacter sp. M21]
 gi|251776456|gb|ACT19037.1| histone family protein DNA-binding protein [Geobacter sp. M21]
          Length = 91

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++E  L++ D+ + +  + + + +    G+ + +  F TF V ++ +R G
Sbjct: 1  MNKAELVSAIAEEAQLTKVDAEKSLMGILDALTNCLAAGDKVTLVGFGTFSVAERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT ++++I       FK  + LK  + 
Sbjct: 61 QNPQTGKKIEIAASSAPKFKPGNTLKDLVN 90


>gi|30468180|ref|NP_849067.1| DNA-binding protein Hu homolog [Cyanidioschyzon merolae strain 10D]
 gi|19911236|dbj|BAB86889.1| histone-like protein of chloroplast [Cyanidioschyzon merolae]
 gi|30409280|dbj|BAC76229.1| DNA-binding protein Hu homolog [Cyanidioschyzon merolae strain 10D]
          Length = 112

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 60/103 (58%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L+ +++++ GLS+K     +  + ++I    V G+ +K+  F TF  + + +R G
Sbjct: 1   MDKTELISAVAEKVGLSKKQVREVINEILSQIAKQLVLGQKVKLVGFGTFSKQYRAARDG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           RN +T + + I  R VVVF   S LK+++ + M+    +++D 
Sbjct: 61  RNPRTGERLIIPERHVVVFSPGSDLKQQVQEPMQQASQSQEDA 103


>gi|115522479|ref|YP_779390.1| integration host factor subunit beta [Rhodopseudomonas palustris
          BisA53]
 gi|122297854|sp|Q07UH4|IHFB_RHOP5 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|115516426|gb|ABJ04410.1| integration host factor, beta subunit [Rhodopseudomonas palustris
          BisA53]
          Length = 102

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  +  EI  +  RG+ +++  F  F VK + +R 
Sbjct: 1  MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVAALARGDRVELRGFGAFSVKHRPARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V ++ + V  FK    +++R+  D
Sbjct: 61 GRNPRTGEHVPVEQKSVPFFKTGKEMRERLNRD 93


>gi|149204022|ref|ZP_01880990.1| integration host factor subunit beta [Roseovarius sp. TM1035]
 gi|149142464|gb|EDM30509.1| integration host factor subunit beta [Roseovarius sp. TM1035]
          Length = 93

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L ++D  R V T+FNEI D+   G  +++  F  F VK++ +R 
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTIFNEITDALAEGNRVELRGFGAFSVKKRDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V ++ + V  FK   +L+ R+  
Sbjct: 61 GRNPRTGESVHVEEKNVPFFKTGKLLRDRLNG 92


>gi|323136116|ref|ZP_08071199.1| integration host factor, beta subunit [Methylocystis sp. ATCC
          49242]
 gi|322399207|gb|EFY01726.1| integration host factor, beta subunit [Methylocystis sp. ATCC
          49242]
          Length = 96

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 58/96 (60%), Gaps = 1/96 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ I++  G L ++D    V+T+ +EI  +  RG+ +++  F  F VK++ +R 
Sbjct: 1  MIKSELIQRIARRNGHLYQRDVETIVSTILDEITAALARGDRVELRGFGAFSVKKRDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T  +V +  + V  FK    +++R+ ++ +G
Sbjct: 61 GRNPRTGAQVSVQEKSVPFFKTGKEMRERLNENYQG 96


>gi|189424977|ref|YP_001952154.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
 gi|189421236|gb|ACD95634.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
          Length = 92

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 61/92 (66%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +L K + +E G+ +K++  +V  L + I ++  +GE +KIS F  F V++K +R G
Sbjct: 1  MTKIELAKQLHQELGIRQKEAADYVEALLDLIKETLEKGENVKISGFGIFEVREKNARRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN QT + + I+PRRV+ FK S+ILK+ I  +
Sbjct: 61 RNPQTGEAITIEPRRVLTFKPSAILKESINRE 92


>gi|261493979|ref|ZP_05990487.1| DNA-binding protein HU [Mannheimia haemolytica serotype A2 str.
          BOVINE]
 gi|261494737|ref|ZP_05991216.1| DNA-binding protein HU [Mannheimia haemolytica serotype A2 str.
          OVINE]
 gi|261309554|gb|EEY10778.1| DNA-binding protein HU [Mannheimia haemolytica serotype A2 str.
          OVINE]
 gi|261310411|gb|EEY11606.1| DNA-binding protein HU [Mannheimia haemolytica serotype A2 str.
          BOVINE]
          Length = 90

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+    L++KD+   +    + I  S   G+A+++  F TF V ++ +R G
Sbjct: 1  MNKTELIDAIAAGANLTKKDAKAALEATLDAISASLKAGDAVQLIGFGTFKVNERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E+KI   +V  F +   LK  + 
Sbjct: 61 RNPKTGEEIKIAAAKVPAFVSGKALKDLVK 90


>gi|89054274|ref|YP_509725.1| integration host factor subunit alpha [Jannaschia sp. CCS1]
 gi|123094287|sp|Q28RG2|IHFA_JANSC RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|88863823|gb|ABD54700.1| integration host factor alpha subunit [Jannaschia sp. CCS1]
          Length = 100

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/97 (44%), Positives = 64/97 (65%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           KT+TR DL +++ +E GLSR +S+  V  +   + D+ V GE +K+SSF TF V+ K +
Sbjct: 3  GKTLTRMDLSEAVFREVGLSRNESSELVERVLQLMSDALVDGEQVKVSSFGTFSVRSKTA 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RVGRN +T +EV I PRRV+ F+ S ++K R+    R
Sbjct: 63 RVGRNPKTGEEVPISPRRVLTFRPSHLMKDRVAAGNR 99


>gi|291542886|emb|CBL15996.1| bacterial nucleoid protein Hbs [Ruminococcus bromii L2-63]
          Length = 91

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 55/91 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++ GLS+KD+ + V++  + I ++   GE I+I+ F TF  +Q+ +R G
Sbjct: 1  MNKTELIAAVAEQSGLSKKDAEKAVSSTIDTIINTVAEGEKIQIAGFGTFEQRQRNARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           + +T + ++I   +V  FKA    K  +  
Sbjct: 61 CDPRTGKSIEIPASKVPAFKAGKGFKDVVNK 91


>gi|218682312|ref|ZP_03529913.1| integration host factor subunit alpha [Rhizobium etli CIAT 894]
          Length = 112

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 51/102 (50%), Positives = 73/102 (71%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +S+ ++ GLSR +S   V T+ +E+C++ VRGE +K+SSFATF V+ K  
Sbjct: 3   GKTVTRADLAESVFRKVGLSRTESAELVETVIDEVCNAIVRGETVKLSSFATFQVRDKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           R+GRN +T +EV I PRRV+ FKAS++LK RI+     RK  
Sbjct: 63  RIGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVSRKVK 104


>gi|319938218|ref|ZP_08012616.1| histone family protein DNA-binding protein [Coprobacillus sp.
          29_1]
 gi|319806739|gb|EFW03388.1| histone family protein DNA-binding protein [Coprobacillus sp.
          29_1]
          Length = 92

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 49/91 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV+ I+   GL++  +   V      + D    G+ I +  F TF V+ + +R G
Sbjct: 1  MNKTELVEKIAATAGLTKTQAEAAVNAFVATVTDGLKDGDKITLKGFGTFEVRAREARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + ++I   +V  FKASS LK  + +
Sbjct: 61 RNPRTGETMEIAASKVPAFKASSALKNVVNE 91


>gi|190891275|ref|YP_001977817.1| bacterial nucleoid DNA-binding protein [Rhizobium etli CIAT 652]
 gi|218462450|ref|ZP_03502541.1| bacterial nucleoid DNA-binding protein [Rhizobium etli Kim 5]
 gi|241204076|ref|YP_002975172.1| histone family protein DNA-binding protein [Rhizobium
          leguminosarum bv. trifolii WSM1325]
 gi|190696554|gb|ACE90639.1| bacterial nucleoid DNA-binding protein [Rhizobium etli CIAT 652]
 gi|240857966|gb|ACS55633.1| histone family protein DNA-binding protein [Rhizobium
          leguminosarum bv. trifolii WSM1325]
          Length = 91

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ GL++ D+   V  +F+ +         I+++ F +F V  + +  G
Sbjct: 1  MNKNELVSAVAEKAGLTKSDAASAVDAVFDVVQAELKNKGDIRLAGFGSFTVSHRAASKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T  EV I  R V  F     LK  +  
Sbjct: 61 RNPSTGAEVDIPARNVPKFTPGKGLKDAVNG 91


>gi|254438095|ref|ZP_05051589.1| integration host factor, alpha subunit [Octadecabacter
          antarcticus 307]
 gi|198253541|gb|EDY77855.1| integration host factor, alpha subunit [Octadecabacter
          antarcticus 307]
          Length = 92

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 61/91 (67%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DL  ++ +E GLSR +S+  V ++  ++ D+   G+++KISSF TF ++ K +R+GRN +
Sbjct: 2  DLADAVHEEVGLSRNESSDLVESVLTQMSDALAGGDSVKISSFGTFSIRDKAARIGRNPK 61

Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          T +EV I PRRV+ F+ S ++K R+    +G
Sbjct: 62 TGEEVPITPRRVLSFRPSHLMKDRVAAGNKG 92


>gi|154483310|ref|ZP_02025758.1| hypothetical protein EUBVEN_01011 [Eubacterium ventriosum ATCC
           27560]
 gi|149735820|gb|EDM51706.1| hypothetical protein EUBVEN_01011 [Eubacterium ventriosum ATCC
           27560]
          Length = 112

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++ + +I++E GLS+ D+ + V    + + +   +GE I++  F TF V ++  R G
Sbjct: 23  MNKTEFIAAIAEEAGLSKTDAAKAVKAFTDVVVEEMKKGEKIQLVGFGTFEVSKRPERQG 82

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            N  T +++ I    V  FKA + LK  + 
Sbjct: 83  INPATKEKITIAAANVPKFKAGAGLKNALN 112


>gi|118602049|ref|YP_908749.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photobacterium damselae
          subsp. piscicida]
 gi|118614789|ref|YP_908572.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photobacterium damselae
          subsp. piscicida]
 gi|134044455|ref|YP_001101716.1| DNA-binding protein HU [Yersinia ruckeri]
 gi|134044925|ref|YP_001102091.1| DNA-binding protein HU [Yersinia pestis biovar Orientalis str.
          IP275]
 gi|134047232|ref|YP_001101901.1| DNA-binding protein HU [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
 gi|165937926|ref|ZP_02226486.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis
          str. IP275]
 gi|229516100|ref|ZP_04405550.1| DNA-binding protein HU-beta [Vibrio cholerae RC9]
 gi|237640210|ref|YP_002891065.1| hypothetical protein peH4H_0022 [Escherichia coli]
 gi|237809930|ref|YP_002894369.1| hypothetical protein pAR060302_0023 [Escherichia coli]
 gi|237810119|ref|YP_002894558.1| hypothetical protein pAM04528_0022 [Salmonella enterica]
 gi|300925740|ref|ZP_07141598.1| DNA-binding protein HU [Escherichia coli MS 182-1]
 gi|118596880|dbj|BAF38184.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photobacterium damselae
          subsp. piscicida]
 gi|118597058|dbj|BAF38361.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photobacterium damselae
          subsp. piscicida]
 gi|133904818|gb|ABO40835.1| DNA-binding protein HU [Yersinia ruckeri]
 gi|133905151|gb|ABO41166.1| DNA-binding protein HU [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
 gi|133905459|gb|ABO42221.1| DNA-binding protein HU [Yersinia pestis biovar Orientalis str.
          IP275]
 gi|165913949|gb|EDR32566.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis
          str. IP275]
 gi|229346880|gb|EEO11848.1| DNA-binding protein HU-beta [Vibrio cholerae RC9]
 gi|229561429|gb|ACQ77632.1| conserved hypothetical protein [Escherichia coli]
 gi|229561603|gb|ACQ77805.1| conserved hypothetical protein [Salmonella enterica]
 gi|229561785|gb|ACQ77986.1| conserved hypothetical protein [Escherichia coli]
 gi|300418162|gb|EFK01473.1| DNA-binding protein HU [Escherichia coli MS 182-1]
 gi|324007578|gb|EGB76797.1| DNA-binding protein HU [Escherichia coli MS 57-2]
 gi|327536459|gb|AEA95292.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
          serovar Dublin]
 gi|332144534|dbj|BAK19754.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Typhimurium]
          Length = 90

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  ++++  +S+  +   V  L N + +    G  + ++ F TFHVK++ +R G
Sbjct: 1  MNKSELIMKVAEDADISKAKAEAAVNALINSVTEELKAGGTVALTGFGTFHVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++I    +  FKA   LK  + 
Sbjct: 61 RNPQTGENIQIAAANIPGFKAGKGLKDSVN 90


>gi|283851059|ref|ZP_06368343.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          FW1012B]
 gi|283573455|gb|EFC21431.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          FW1012B]
          Length = 90

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  I+++ GL++ ++ R +      I  + V    + ++ F TF V ++ +R G
Sbjct: 1  MTKADLVGKIAEKTGLTKANAERALNAFIEAIEATLVGEGKLTLTGFGTFMVDERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  E+ I   +VV F+   +LK  I 
Sbjct: 61 RNPRTGTEINIPASKVVKFRPGKLLKDAIQ 90


>gi|16762287|ref|NP_457904.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. CT18]
 gi|16767424|ref|NP_463039.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhimurium str. LT2]
 gi|29143775|ref|NP_807117.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. Ty2]
 gi|56415996|ref|YP_153071.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62182621|ref|YP_219038.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|157147203|ref|YP_001454522.1| transcriptional regulator HU subunit alpha [Citrobacter koseri
          ATCC BAA-895]
 gi|161505342|ref|YP_001572454.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|161617309|ref|YP_001591274.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167553826|ref|ZP_02347570.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA29]
 gi|168234408|ref|ZP_02659466.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Kentucky str. CDC 191]
 gi|168239596|ref|ZP_02664654.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. SL480]
 gi|168245126|ref|ZP_02670058.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL486]
 gi|168264574|ref|ZP_02686547.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
 gi|168467898|ref|ZP_02701735.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Newport str. SL317]
 gi|168823116|ref|ZP_02835116.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Weltevreden str. HI_N05-537]
 gi|194445718|ref|YP_002043418.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Newport str. SL254]
 gi|194450276|ref|YP_002048155.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Heidelberg str. SL476]
 gi|194472167|ref|ZP_03078151.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Kentucky str. CVM29188]
 gi|194737577|ref|YP_002117071.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197249995|ref|YP_002149078.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Agona str. SL483]
 gi|197265623|ref|ZP_03165697.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA23]
 gi|197364923|ref|YP_002144560.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198243874|ref|YP_002218086.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Dublin str. CT_02021853]
 gi|200387831|ref|ZP_03214443.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Virchow str. SL491]
 gi|204931262|ref|ZP_03222022.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Javiana str. GA_MM04042433]
 gi|205354428|ref|YP_002228229.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Gallinarum str. 287/91]
 gi|207859348|ref|YP_002245999.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Enteritidis str. P125109]
 gi|213051532|ref|ZP_03344410.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. E00-7866]
 gi|213420368|ref|ZP_03353434.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. E01-6750]
 gi|213428479|ref|ZP_03361229.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. E02-1180]
 gi|213586806|ref|ZP_03368632.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. E98-0664]
 gi|213609700|ref|ZP_03369526.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. E98-2068]
 gi|213647192|ref|ZP_03377245.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. J185]
 gi|213855082|ref|ZP_03383322.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. M223]
 gi|224585710|ref|YP_002639509.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|237727864|ref|ZP_04558345.1| transcriptional regulator HU subunit alpha [Citrobacter sp. 30_2]
 gi|238913748|ref|ZP_04657585.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|283787327|ref|YP_003367192.1| DNA-binding protein HU-alpha [Citrobacter rodentium ICC168]
 gi|283836739|ref|ZP_06356480.1| DNA-binding protein HU-beta [Citrobacter youngae ATCC 29220]
 gi|289804949|ref|ZP_06535578.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. AG3]
 gi|289826727|ref|ZP_06545692.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. E98-3139]
 gi|60392169|sp|P0A1R6|DBHA_SALTY RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2;
          AltName: Full=NS2
 gi|60392170|sp|P0A1R7|DBHA_SALTI RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2;
          AltName: Full=NS2
 gi|25294362|pir||AH0931 histone like DNA-binding protein HU-alpha (NS2) (HU-2) [imported]
          - Salmonella enterica subsp. enterica serovar Typhi
          (strain CT18)
 gi|154139|gb|AAA27147.1| histone-like protein [Salmonella enterica subsp. enterica serovar
          Typhimurium]
 gi|6960343|gb|AAF33503.1| Salmonella typhimurium DNA-binding protein HU-2 (HUPA)
          (SW:P15148); contains similarity to Pfam domain PF00216
          (BAC_DBA_binding), Score=182.9, E=1.7e-51, N=1
          [Salmonella enterica subsp. enterica serovar
          Typhimurium str. LT2]
 gi|16422729|gb|AAL22998.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|16504591|emb|CAD09474.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2)
          [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29139410|gb|AAO70977.1| histone like DNA-binding protein HU-alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. Ty2]
 gi|56130253|gb|AAV79759.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2)
          [Salmonella enterica subsp. enterica serovar Paratyphi
          A str. ATCC 9150]
 gi|62130254|gb|AAX67957.1| DNA-binding protein HU-alpha (HU-2) [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. SC-B67]
 gi|157084408|gb|ABV14086.1| hypothetical protein CKO_02986 [Citrobacter koseri ATCC BAA-895]
 gi|160866689|gb|ABX23312.1| hypothetical protein SARI_03487 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
 gi|161366673|gb|ABX70441.1| hypothetical protein SPAB_05160 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|194404381|gb|ACF64603.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
 gi|194408580|gb|ACF68799.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL476]
 gi|194458531|gb|EDX47370.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Kentucky str. CVM29188]
 gi|194713079|gb|ACF92300.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|195629006|gb|EDX48398.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Newport str. SL317]
 gi|197096400|emb|CAR62005.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2)
          [Salmonella enterica subsp. enterica serovar Paratyphi
          A str. AKU_12601]
 gi|197213698|gb|ACH51095.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Agona str. SL483]
 gi|197243878|gb|EDY26498.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA23]
 gi|197287722|gb|EDY27113.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. SL480]
 gi|197938390|gb|ACH75723.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Dublin str. CT_02021853]
 gi|199604929|gb|EDZ03474.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Virchow str. SL491]
 gi|204319877|gb|EDZ05084.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Javiana str. GA_MM04042433]
 gi|205274209|emb|CAR39227.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2)
          [Salmonella enterica subsp. enterica serovar Gallinarum
          str. 287/91]
 gi|205321830|gb|EDZ09669.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA29]
 gi|205331654|gb|EDZ18418.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Kentucky str. CDC 191]
 gi|205336108|gb|EDZ22872.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL486]
 gi|205340578|gb|EDZ27342.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Weltevreden str. HI_N05-537]
 gi|205346968|gb|EDZ33599.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
 gi|206711151|emb|CAR35525.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2)
          [Salmonella enterica subsp. enterica serovar
          Enteritidis str. P125109]
 gi|224470238|gb|ACN48068.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2)
          [Salmonella enterica subsp. enterica serovar Paratyphi
          C strain RKS4594]
 gi|226910421|gb|EEH96339.1| transcriptional regulator HU subunit alpha [Citrobacter sp. 30_2]
 gi|261249274|emb|CBG27136.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2)
          [Salmonella enterica subsp. enterica serovar
          Typhimurium str. D23580]
 gi|267996471|gb|ACY91356.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhimurium str. 14028S]
 gi|282950781|emb|CBG90457.1| DNA-binding protein HU-alpha [Citrobacter rodentium ICC168]
 gi|291067290|gb|EFE05399.1| DNA-binding protein HU-beta [Citrobacter youngae ATCC 29220]
 gi|301160666|emb|CBW20197.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2)
          [Salmonella enterica subsp. enterica serovar
          Typhimurium str. SL1344]
 gi|312915276|dbj|BAJ39250.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhimurium str. T000240]
 gi|321223370|gb|EFX48437.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
          serovar Typhimurium str. TN061786]
 gi|322616279|gb|EFY13189.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 315996572]
 gi|322617278|gb|EFY14180.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625950|gb|EFY22765.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 495297-3]
 gi|322626652|gb|EFY23454.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631487|gb|EFY28244.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635200|gb|EFY31918.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642595|gb|EFY39191.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 531954]
 gi|322646806|gb|EFY43310.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str.
          NC_MB110209-0054]
 gi|322650804|gb|EFY47197.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655896|gb|EFY52197.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str.
          CASC_09SCPH15965]
 gi|322657295|gb|EFY53574.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 19N]
 gi|322665557|gb|EFY61742.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669740|gb|EFY65885.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670981|gb|EFY67113.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 414877]
 gi|322679195|gb|EFY75248.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 366867]
 gi|322679353|gb|EFY75400.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 413180]
 gi|322688120|gb|EFY84084.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 446600]
 gi|322717118|gb|EFZ08689.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Choleraesuis str. A50]
 gi|323132506|gb|ADX19936.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhimurium str. 4/74]
 gi|323193388|gb|EFZ78598.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 609458-1]
 gi|323200692|gb|EFZ85765.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202181|gb|EFZ87237.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 609460]
 gi|323209292|gb|EFZ94227.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211617|gb|EFZ96454.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 556152]
 gi|323218045|gb|EGA02758.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323221334|gb|EGA05756.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225739|gb|EGA09960.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230973|gb|EGA15090.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323235755|gb|EGA19837.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240069|gb|EGA24115.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 2009085258]
 gi|323242598|gb|EGA26620.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. 315731156]
 gi|323249694|gb|EGA33601.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323252577|gb|EGA36418.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256929|gb|EGA40641.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262048|gb|EGA45612.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323263946|gb|EGA47460.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323268441|gb|EGA51911.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326625879|gb|EGE32224.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Dublin str. 3246]
 gi|326629560|gb|EGE35903.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Gallinarum str. 9]
 gi|332990989|gb|AEF09972.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhimurium str. UK-1]
          Length = 90

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|110635997|ref|YP_676205.1| integration host factor, beta subunit [Mesorhizobium sp. BNC1]
 gi|123161580|sp|Q11C35|IHFB_MESSB RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|110286981|gb|ABG65040.1| integration host factor, beta subunit [Chelativorans sp. BNC1]
          Length = 94

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 53/93 (56%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV++I+ +   L  +D    V  +F+EI ++  +G  +++  F  F VK + +R 
Sbjct: 1  MIKSELVQTIANRNPHLFLRDVENIVNAIFDEITEALAQGNRVELRGFGAFSVKNRPART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V ++ + V  FK    L++R+  D
Sbjct: 61 GRNPRTGESVHVEEKWVPFFKTGKELRERLNAD 93


>gi|145589020|ref|YP_001155617.1| integration host factor, alpha subunit [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047426|gb|ABP34053.1| integration host factor, alpha subunit [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 107

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 56/100 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S T+T+++L +++  + GL+++++   +   F+ I  S   G  +KIS F  F ++ K +
Sbjct: 7   SDTVTKNELSEALFDQVGLNKREAKDMIDAFFDRIGQSLEAGTEVKISGFGNFQLRNKSA 66

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           R GRN +T Q + I  RRVV F AS  LK  +    R  +
Sbjct: 67  RPGRNPKTGQMIPIAARRVVTFHASQKLKDVVESHARENR 106


>gi|330994019|ref|ZP_08317949.1| Integration host factor subunit alpha [Gluconacetobacter sp.
           SXCC-1]
 gi|329758965|gb|EGG75479.1| Integration host factor subunit alpha [Gluconacetobacter sp.
           SXCC-1]
          Length = 109

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 1/106 (0%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           MS T+TR+ L + I  + GLSR +S   +  +   +  +   G+ +KIS F TF V+QKG
Sbjct: 3   MS-TVTRATLAEQIYDQVGLSRHESADILEDILERMVRTLETGDTLKISGFGTFSVRQKG 61

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
            R GRN +T  EV I PR V+VF+ S +L+  +     G    + D
Sbjct: 62  QRTGRNPKTGVEVPILPRSVLVFRPSQLLRAHVNGQAGGENLPEGD 107


>gi|119356085|ref|YP_910729.1| histone family protein DNA-binding protein [Chlorobium
          phaeobacteroides DSM 266]
 gi|119353434|gb|ABL64305.1| histone family protein DNA-binding protein [Chlorobium
          phaeobacteroides DSM 266]
          Length = 91

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 49/91 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++++LV+ I+ + GL++ D+ R V    N + +S   GE + +  F TF   ++  R G
Sbjct: 1  MSKAELVEKIASQAGLTKVDAERAVNAFMNVVTESLKEGEDVTLVGFGTFTTGERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN Q  + + I  ++VV FK    LK  +  
Sbjct: 61 RNPQNGETITIAAKKVVKFKPGKALKAGVEG 91


>gi|319898049|ref|YP_004136246.1| DNA-binding protein hu [Haemophilus influenzae F3031]
 gi|317433555|emb|CBY81939.1| DNA-binding protein HU [Haemophilus influenzae F3031]
          Length = 90

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+    L++K +   +    + I  S  +GE +++  F TF V ++ +R G
Sbjct: 1  MNKTNLIDAIANAAELNKKQAKAALEATLDAITASLKKGEPVQLIGFGTFKVNERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I   +V  F +   LK  I 
Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAIK 90


>gi|301629532|ref|XP_002943892.1| PREDICTED: integration host factor subunit beta-like [Xenopus
          (Silurana) tropicalis]
          Length = 99

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDLV++++  F  L+ +D+   V  + + + D+ VRG+ I+I  F +F + ++  R+
Sbjct: 1  MTRSDLVEALATRFRQLTHRDAEHAVRAILDAVGDALVRGQRIEIRGFGSFSITRRPPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V+I  +RV  FK    L++ +
Sbjct: 61 GRNPRSGEAVQIPEKRVPHFKPGKALRESV 90


>gi|227485001|ref|ZP_03915317.1| DNA-binding protein HU [Anaerococcus lactolyticus ATCC 51172]
 gi|227236998|gb|EEI87013.1| DNA-binding protein HU [Anaerococcus lactolyticus ATCC 51172]
          Length = 92

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 54/92 (58%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ SIS++ GL + +S + +      + ++ V+G+ +++  F TF V+ + +R G
Sbjct: 1  MNKSELLNSISEKSGLKKVESEKALNAFLETVQEALVKGDKVQLVGFGTFEVRDRKAREG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95
          RN +  +E ++I   +  VFKA   LK+ +  
Sbjct: 61 RNPRKPEEVIQIPASKAPVFKAGKTLKEAVNK 92


>gi|229591359|ref|YP_002873478.1| DNA-binding protein HU-beta [Pseudomonas fluorescens SBW25]
 gi|312961786|ref|ZP_07776284.1| DNA-binding protein HU, beta subunit [Pseudomonas fluorescens
          WH6]
 gi|213521162|gb|ACJ50519.1| DNA-binding protein HU-beta [Pseudomonas fluorescens]
 gi|229363225|emb|CAY50308.1| DNA-binding protein HU-beta [Pseudomonas fluorescens SBW25]
 gi|256556955|gb|ACU83577.1| DNA-binding protein HU-beta [uncultured bacterium HF130_AEPn_2]
 gi|311284045|gb|EFQ62628.1| DNA-binding protein HU, beta subunit [Pseudomonas fluorescens
          WH6]
          Length = 90

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  +   +  +   G+++ +  F TF V  + +R G
Sbjct: 1  MNKSELIDAIAASADIPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++I   +   FKA   LK+ + 
Sbjct: 61 RNPQTGKALQIAAAKKPGFKAGKALKEAVN 90


>gi|86141624|ref|ZP_01060170.1| DNA-binding protein HU-beta (NS1) (HU-1) [Leeuwenhoekiella
          blandensis MED217]
 gi|85832183|gb|EAQ50638.1| DNA-binding protein HU-beta (NS1) (HU-1) [Leeuwenhoekiella
          blandensis MED217]
          Length = 90

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+ +++++ G+++  + + + +    I  S   G+ + +  F ++ V ++ +R G
Sbjct: 1  MNKSDLIDAMAEDAGITKAAAKKALESFLGNIEKSLKGGDRVSLVGFGSWSVSKRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++I  + VV FKA S L   + 
Sbjct: 61 RNPQTGKTIQIAAKNVVKFKAGSDLSDAVN 90


>gi|91977158|ref|YP_569817.1| integration host factor subunit alpha [Rhodopseudomonas palustris
          BisB5]
 gi|123735393|sp|Q136S3|IHFA_RHOPS RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|91683614|gb|ABE39916.1| integration host factor, alpha subunit [Rhodopseudomonas
          palustris BisB5]
          Length = 123

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/95 (49%), Positives = 68/95 (71%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +T+TR DL +++ ++ GLSR +S+ FV  +  EI D   +GE +K+SSF +F V+QKG 
Sbjct: 5  GRTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVRQKGQ 64

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          R+GRN +T  EV I PRRV+VFK S+ILK+RI  +
Sbjct: 65 RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINAN 99


>gi|86749768|ref|YP_486264.1| integration host factor subunit alpha [Rhodopseudomonas palustris
          HaA2]
 gi|123004139|sp|Q2IWQ7|IHFA_RHOP2 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|86572796|gb|ABD07353.1| integration host factor, alpha subunit [Rhodopseudomonas
          palustris HaA2]
          Length = 123

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/95 (49%), Positives = 68/95 (71%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +T+TR DL +++ ++ GLSR +S+ FV  +  EI D   +GE +K+SSF +F V+QKG 
Sbjct: 5  GRTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVRQKGQ 64

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          R+GRN +T  EV I PRRV+VFK S+ILK+RI  +
Sbjct: 65 RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINAN 99


>gi|241758757|ref|ZP_04756870.1| DNA-binding protein HU-beta [Neisseria flavescens SK114]
 gi|261380122|ref|ZP_05984695.1| DNA-binding protein HU-beta [Neisseria subflava NJ9703]
 gi|319638329|ref|ZP_07993092.1| DNA-binding protein HU-beta [Neisseria mucosa C102]
 gi|241320965|gb|EER57178.1| DNA-binding protein HU-beta [Neisseria flavescens SK114]
 gi|284796958|gb|EFC52305.1| DNA-binding protein HU-beta [Neisseria subflava NJ9703]
 gi|317400602|gb|EFV81260.1| DNA-binding protein HU-beta [Neisseria mucosa C102]
          Length = 89

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I++E G+S+  + + +    N + ++   G+ + +  F TF+V ++  R G
Sbjct: 1  MNKSELIEAIAQEAGISKSAAQKALDATTNAVTNALKNGDTVTLVGFGTFYVGERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I   +   F+A   LK  +
Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKALKDAL 89


>gi|27366256|ref|NP_761784.1| integration host factor subunit beta [Vibrio vulnificus CMCP6]
 gi|320156765|ref|YP_004189144.1| integration host factor subunit beta [Vibrio vulnificus MO6-24/O]
 gi|33301285|sp|Q8D8J3|IHFB_VIBVU RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|27362457|gb|AAO11311.1| integration host factor, beta subunit [Vibrio vulnificus CMCP6]
 gi|319932077|gb|ADV86941.1| integration host factor beta subunit [Vibrio vulnificus MO6-24/O]
          Length = 93

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + +++  LS K+    V  +   +  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L++R+ 
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91


>gi|229014688|ref|ZP_04171798.1| DNA-binding protein HU [Bacillus mycoides DSM 2048]
 gi|228746594|gb|EEL96487.1| DNA-binding protein HU [Bacillus mycoides DSM 2048]
          Length = 93

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 53/92 (57%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +++L K ++++  L++K++      + N I ++    + ++I  F TF V+++ +R
Sbjct: 2  QKMNKTELTKMVAEKAELTQKEAAAATQAVLNAITNALANEDKVQILGFGTFEVRERSAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E++I   +   FKA   LK+ + 
Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93


>gi|49474142|ref|YP_032184.1| DNA-binding protein [Bartonella quintana str. Toulouse]
 gi|49239646|emb|CAF26006.1| DNA-binding protein [Bartonella quintana str. Toulouse]
          Length = 92

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV S++++ G+S+  +   +      + ++   G  +++  F +F +  + +  G
Sbjct: 1  MNKSELVSSVAEKAGVSKAQAGSVIDAFIASVTEALASGGDVRLPGFGSFEISHRAATKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T  E+ I  R V  F A   LK+ +  
Sbjct: 61 RNPSTGVEINIPARSVPKFSAGKTLKEAVNK 91


>gi|255065928|ref|ZP_05317783.1| DNA-binding protein HU-beta [Neisseria sicca ATCC 29256]
 gi|261364607|ref|ZP_05977490.1| DNA-binding protein HU-beta [Neisseria mucosa ATCC 25996]
 gi|261378756|ref|ZP_05983329.1| DNA-binding protein HU-beta [Neisseria cinerea ATCC 14685]
 gi|255049839|gb|EET45303.1| DNA-binding protein HU-beta [Neisseria sicca ATCC 29256]
 gi|269144911|gb|EEZ71329.1| DNA-binding protein HU-beta [Neisseria cinerea ATCC 14685]
 gi|288567196|gb|EFC88756.1| DNA-binding protein HU-beta [Neisseria mucosa ATCC 25996]
          Length = 89

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I++E G+S+  + + +    N + ++  +G+ + +  F TF+V ++  R G
Sbjct: 1  MNKSELIEAIAQEAGISKAAAQKALDATTNAVTNALKKGDTVTLVGFGTFYVGERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I   +   F+A   LK  +
Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKALKDAL 89


>gi|220934716|ref|YP_002513615.1| integration host factor, beta subunit [Thioalkalivibrio sp.
          HL-EbGR7]
 gi|254803541|sp|B8GRS4|IHFB_THISH RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|219996026|gb|ACL72628.1| integration host factor, beta subunit [Thioalkalivibrio sp.
          HL-EbGR7]
          Length = 96

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++++   L+ KD    V T+   +  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIEILARKQSHLAYKDVELSVKTMLEHLSQALATGDRIEIRGFGSFSLHFRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T + V +  + V  FK    L++R+ 
Sbjct: 61 GRNPKTGETVSLPGKYVPHFKPGKELRERVN 91


>gi|163793229|ref|ZP_02187205.1| Integration host factor, alpha subunit [alpha proteobacterium
          BAL199]
 gi|159181875|gb|EDP66387.1| Integration host factor, alpha subunit [alpha proteobacterium
          BAL199]
          Length = 106

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/93 (47%), Positives = 64/93 (68%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            T+TR+ L +S+ +E GLSR +S   V ++ +E+  +  RGE +KISSF +F V+QKG 
Sbjct: 7  GHTVTRAQLSESVYEEVGLSRNESAELVESVLDEMIAALARGEMVKISSFGSFSVRQKGR 66

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RVGRN +T  EV I PR+V+VF+ S +LK +I 
Sbjct: 67 RVGRNPKTGDEVPILPRKVLVFRPSHVLKNQIN 99


>gi|77460281|ref|YP_349788.1| integration host factor subunit beta [Pseudomonas fluorescens
           Pf0-1]
 gi|123603757|sp|Q3K8V7|IHFB_PSEPF RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|77384284|gb|ABA75797.1| integration host factor beta-subunit [Pseudomonas fluorescens
           Pf0-1]
          Length = 98

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 5   ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L++ I    GL S KD    + T+  ++      G+ I+I  F +F +  +  RV
Sbjct: 1   MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T Q V +D + V  FK    L+ R+ ++  G 
Sbjct: 61  GRNPKTGQSVSLDGKFVPHFKPGKELRDRVNEEEEGE 97


>gi|259046865|ref|ZP_05737266.1| DNA-binding protein HU [Granulicatella adiacens ATCC 49175]
 gi|259036488|gb|EEW37743.1| DNA-binding protein HU [Granulicatella adiacens ATCC 49175]
          Length = 92

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV  ++K+  L++KD +  V  LF  I ++   GE +++  F  F V+++ +R GR
Sbjct: 3  NKAELVDRVAKKTQLTKKDVSATVEALFETIQEALKAGEKVQVIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N QT +E+KI   +V  FKA   LK  +  
Sbjct: 63 NPQTGKEIKIKASKVPAFKAGKALKDAVKK 92


>gi|150014983|ref|YP_001307237.1| histone family protein DNA-binding protein [Clostridium
          beijerinckii NCIMB 8052]
 gi|118264|sp|P05385|DBH_CLOPA RecName: Full=DNA-binding protein HU
 gi|149901448|gb|ABR32281.1| histone family protein DNA-binding protein [Clostridium
          beijerinckii NCIMB 8052]
 gi|224155|prf||1011218A protein II,DNA binding
          Length = 91

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  L++KD+   +  L   + ++  +GE +++  F TF  +++ +R G
Sbjct: 1  MNKAELITSMAEKSKLTKKDAELALKALIESVEEALEKGEKVQLVGFGTFETRERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + + I    V VFKA    K ++  
Sbjct: 61 RNPRTKEVINIPATTVPVFKAGKEFKDKVNK 91


>gi|26988504|ref|NP_743929.1| integration host factor subunit beta [Pseudomonas putida KT2440]
 gi|60392452|sp|P0A128|IHFB_PSEPK RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|60392453|sp|P0A129|IHFB_PSEPU RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|24983270|gb|AAN67393.1|AE016366_1 integration host factor, beta subunit [Pseudomonas putida KT2440]
 gi|1435201|gb|AAB04061.1| IhfB [Pseudomonas putida]
 gi|313500060|gb|ADR61426.1| IhfB [Pseudomonas putida BIRD-1]
          Length = 100

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I    GL S KD    + T+  ++      G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T Q V ++ + V  FK    L+ R+ +D  
Sbjct: 61 GRNPKTGQSVSLEGKFVPHFKPGKELRDRVNEDEH 95


>gi|322436183|ref|YP_004218395.1| histone family protein DNA-binding protein [Acidobacterium sp.
          MP5ACTX9]
 gi|321163910|gb|ADW69615.1| histone family protein DNA-binding protein [Acidobacterium sp.
          MP5ACTX9]
          Length = 108

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  ++    L+R+D    V  LF+ +  +   G+ I+I  F +F  +Q+ SR+G
Sbjct: 1  MTKADLVDKVTSLGDLTRRDGEVIVDLLFDSVIGALKSGDKIEIRGFGSFRTRQRNSRIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  +V +  ++V  FK S  L+  + 
Sbjct: 61 RNPKTGAKVDVPAKKVPFFKPSKELRDLVN 90


>gi|169350831|ref|ZP_02867769.1| hypothetical protein CLOSPI_01605 [Clostridium spiroforme DSM
          1552]
 gi|169292417|gb|EDS74550.1| hypothetical protein CLOSPI_01605 [Clostridium spiroforme DSM
          1552]
          Length = 91

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV++I+    +++ D  + +T+    + D+ V+GE + +  F  F ++++G R G
Sbjct: 1  MNKTELVEAIASNTNMTKTDVDKVITSFIEVVTDALVKGEKVSLKGFGNFEIRERGERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + + I   +   FKASS LK  +  
Sbjct: 61 RNPRTGETMTISASKAPAFKASSALKNAVNK 91


>gi|326317193|ref|YP_004234865.1| histone family protein DNA-binding protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323374029|gb|ADX46298.1| histone family protein DNA-binding protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 121

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +  +T++ L + +  + GL++++S   +   F+ I    V G+ +KIS F  F ++ K  
Sbjct: 22  TPALTKAQLAELLFDQIGLNKRESKDMIDAFFDLIAQRLVDGQDVKISGFGNFQIRTKAP 81

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T + + I  RRVV F AS+ LK++I   
Sbjct: 82  RPGRNPRTGEAIPIQARRVVTFHASTKLKEQIQGG 116


>gi|254435518|ref|ZP_05049025.1| integration host factor, beta subunit [Nitrosococcus oceani
          AFC27]
 gi|207088629|gb|EDZ65901.1| integration host factor, beta subunit [Nitrosococcus oceani
          AFC27]
          Length = 96

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  LS +D    V  L   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLAQRQALLSYRDVELAVKMLLEVMSQALAQGERIEIRGFGSFSLHYRPPRS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  + V  FK    L++R+
Sbjct: 61 GRNPKTGDAVPLSSKYVPHFKPGKELRERV 90


>gi|85058119|ref|YP_453821.1| transcriptional regulator HU subunit alpha [Sodalis glossinidius
          str. 'morsitans']
 gi|84778639|dbj|BAE73416.1| DNA-binding protein HU-alpha (HU-2) [Sodalis glossinidius str.
          'morsitans']
          Length = 90

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF +  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKAQAKSALESTLAAITESLKEGDAVQLVGFGTFKINHRSERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V VF +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPVFVSGKALKDAVK 90


>gi|320539744|ref|ZP_08039407.1| putative HU, DNA-binding transcriptional regulator, alpha subunit
          [Serratia symbiotica str. Tucson]
 gi|320030209|gb|EFW12225.1| putative HU, DNA-binding transcriptional regulator, alpha subunit
          [Serratia symbiotica str. Tucson]
          Length = 90

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKADLSKAQAKLALESTLVAITESLKEGDAVQLVGFGTFKVNHRSERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|83952159|ref|ZP_00960891.1| integration host factor, alpha subunit [Roseovarius nubinhibens
          ISM]
 gi|83837165|gb|EAP76462.1| integration host factor, alpha subunit [Roseovarius nubinhibens
          ISM]
          Length = 92

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/90 (47%), Positives = 64/90 (71%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DL ++I +E GLSR DS + V ++ + + D+ VRGE +KISSF TF V+QK +R+GRN +
Sbjct: 2  DLSEAIFREVGLSRNDSAQLVESVLDHMSDALVRGEQVKISSFGTFSVRQKSARMGRNPK 61

Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          T  EV IDPRRV+ F+ S ++K+R+    +
Sbjct: 62 TGTEVPIDPRRVLTFRPSHLMKERVAAGNK 91


>gi|296282450|ref|ZP_06860448.1| integration host factor subunit alpha [Citromicrobium
          bathyomarinum JL354]
          Length = 100

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/99 (44%), Positives = 64/99 (64%), Gaps = 3/99 (3%)

Query: 1  MSK---TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          MS+   T+TR+DL ++I+++ G SR +S   V ++   +CDS   GE +KIS F +F ++
Sbjct: 1  MSRSAGTLTRADLAETINRKLGFSRAESLALVESILAHMCDSLKDGENVKISGFGSFVLR 60

Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           K  RVGRN +T  EV I PRRV+ F+AS  L+ RI D 
Sbjct: 61 DKKERVGRNPKTGVEVPITPRRVMTFRASQTLRDRIADG 99


>gi|256822124|ref|YP_003146087.1| integration host factor subunit beta [Kangiella koreensis DSM
          16069]
 gi|256795663|gb|ACV26319.1| integration host factor, beta subunit [Kangiella koreensis DSM
          16069]
          Length = 100

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S L++ +  +   LS +D    V ++ +++ +S   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSQLIERLVDKNPQLSVRDVELVVKSMIDQMSESLSDGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + VK+D + V  FK    L++R+ D 
Sbjct: 61 GRNPKTGESVKLDGKYVPHFKPGKELRERVNDG 93


>gi|228472724|ref|ZP_04057482.1| DNA-binding protein HU [Capnocytophaga gingivalis ATCC 33624]
 gi|228275775|gb|EEK14541.1| DNA-binding protein HU [Capnocytophaga gingivalis ATCC 33624]
          Length = 90

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I++E GLS+ D+ + +      +  +  +G+ I +  F ++ V +K +R G
Sbjct: 1  MNKTELIDAIAQEAGLSKADAKKALEAFLATVEKTLKKGDKISLVGFGSWSVTEKAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI  ++VV FKA + L   + 
Sbjct: 61 RNPQTGKTIKIPAKKVVKFKAGTELSNAVN 90


>gi|304392325|ref|ZP_07374266.1| integration host factor, beta subunit [Ahrensia sp. R2A130]
 gi|303295429|gb|EFL89788.1| integration host factor, beta subunit [Ahrensia sp. R2A130]
          Length = 93

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S LV++IS     L ++D    V  + +EI ++  RG+ +++  F  F VK +  RV
Sbjct: 1  MIKSSLVQTISDNNPHLYQRDVENIVNAILDEITEALARGDRVELRGFGAFSVKNRNPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V+++ + V  FK    L+ R+  D
Sbjct: 61 GRNPRTGERVEVEEKWVPFFKTGKDLRDRLNAD 93


>gi|284043331|ref|YP_003393671.1| histone family protein DNA-binding protein [Conexibacter woesei
          DSM 14684]
 gi|283947552|gb|ADB50296.1| histone family protein DNA-binding protein [Conexibacter woesei
          DSM 14684]
          Length = 91

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+ V  ++   GLS+KD+   V  +   I ++  RG  +  S F  FHV ++G+R G
Sbjct: 1  MTKSEFVDQVAANSGLSKKDAGDAVDAVLQTIEEALKRGSEVTFSGFGKFHVAERGAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T ++++I   RV  F   S LK+ + 
Sbjct: 61 RNPSTGEKIQIAASRVPRFTPGSGLKRAVK 90


>gi|254481925|ref|ZP_05095168.1| integration host factor, beta subunit [marine gamma
          proteobacterium HTCC2148]
 gi|214038054|gb|EEB78718.1| integration host factor, beta subunit [marine gamma
          proteobacterium HTCC2148]
          Length = 98

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+++I+ ++  LS KD    V T+   +  S   GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIETIAARQSQLSSKDVELAVKTILEHMSHSLADGERIEIRGFGSFSLHYREPRR 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T   V++  + V  FK    L++R+ 
Sbjct: 61 GRNPKTGDAVELTGKYVPHFKPGKELRERVN 91


>gi|28870878|ref|NP_793497.1| DNA-binding protein HU-beta [Pseudomonas syringae pv. tomato str.
          DC3000]
 gi|66044995|ref|YP_234836.1| histone-like DNA-binding protein [Pseudomonas syringae pv.
          syringae B728a]
 gi|71736986|ref|YP_273938.1| DNA-binding protein HU-beta [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|77459916|ref|YP_349423.1| nucleoid protein HU beta subunit [Pseudomonas fluorescens Pf0-1]
 gi|213968837|ref|ZP_03396978.1| DNA-binding protein HU, beta subunit [Pseudomonas syringae pv.
          tomato T1]
 gi|257483812|ref|ZP_05637853.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tabaci
          ATCC 11528]
 gi|289627507|ref|ZP_06460461.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          aesculi str. NCPPB3681]
 gi|289649942|ref|ZP_06481285.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          aesculi str. 2250]
 gi|289679418|ref|ZP_06500308.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          syringae FF5]
 gi|298486266|ref|ZP_07004329.1| DNA-binding protein HU-beta [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|301384117|ref|ZP_07232535.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tomato
          Max13]
 gi|302059520|ref|ZP_07251061.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tomato
          K40]
 gi|302135029|ref|ZP_07261019.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tomato
          NCPPB 1108]
 gi|302187981|ref|ZP_07264654.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          syringae 642]
 gi|330808575|ref|YP_004353037.1| DNA-binding protein, beta subunit [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|22532107|gb|AAM97839.1|AF447727_1 DNA binding protein HU-beta [Pseudomonas syringae]
 gi|28854127|gb|AAO57192.1| DNA-binding protein HU-beta [Pseudomonas syringae pv. tomato str.
          DC3000]
 gi|63255702|gb|AAY36798.1| Histone-like bacterial DNA-binding protein [Pseudomonas syringae
          pv. syringae B728a]
 gi|71557539|gb|AAZ36750.1| DNA-binding protein HU-beta [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|77383919|gb|ABA75432.1| DNA-binding protein HU-beta [Pseudomonas fluorescens Pf0-1]
 gi|213926440|gb|EEB59994.1| DNA-binding protein HU, beta subunit [Pseudomonas syringae pv.
          tomato T1]
 gi|298159273|gb|EFI00331.1| DNA-binding protein HU-beta [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|320325364|gb|EFW81431.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          glycinea str. B076]
 gi|320327651|gb|EFW83659.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|327376683|gb|AEA68033.1| Putative DNA-binding protein, beta subunit [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
 gi|330868372|gb|EGH03081.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          aesculi str. 0893_23]
 gi|330878775|gb|EGH12924.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
 gi|330882121|gb|EGH16270.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330889994|gb|EGH22655.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. mori
          str. 301020]
 gi|330939709|gb|EGH43004.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. pisi
          str. 1704B]
 gi|330959390|gb|EGH59650.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          maculicola str. ES4326]
 gi|330963317|gb|EGH63577.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          actinidiae str. M302091]
 gi|330972585|gb|EGH72651.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. aceris
          str. M302273PT]
 gi|330975099|gb|EGH75165.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. aptata
          str. DSM 50252]
 gi|330985642|gb|EGH83745.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          lachrymans str. M301315]
 gi|331012682|gb|EGH92738.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tabaci
          ATCC 11528]
 gi|331019232|gb|EGH99288.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
          Length = 90

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  +   +  +   G+++ +  F TF V  + +R+G
Sbjct: 1  MNKSELIDAIAASADIPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++I   +   FKA   LK+ + 
Sbjct: 61 RNPQTGKTLEIAAAKKPGFKAGKALKEAVN 90


>gi|328948102|ref|YP_004365439.1| histone family protein DNA-binding protein [Treponema
          succinifaciens DSM 2489]
 gi|328448426|gb|AEB14142.1| histone family protein DNA-binding protein [Treponema
          succinifaciens DSM 2489]
          Length = 92

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ ++K  GL +KD+   + +    +     +G  +++  F TF V ++ +R G
Sbjct: 1  MNKAELIEKMAKSTGLPKKDAESALKSFLEIVSKELEKGHDVQLIGFGTFTVGKRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T + +KI   +   FK    LK R+  
Sbjct: 61 RNPATGETIKIAASKTPKFKPGKALKDRLNK 91


>gi|148381474|ref|YP_001256015.1| DNA-binding protein HU [Clostridium botulinum A str. ATCC 3502]
 gi|153931858|ref|YP_001385849.1| DNA-binding protein HU [Clostridium botulinum A str. ATCC 19397]
 gi|153937038|ref|YP_001389256.1| DNA-binding protein HU [Clostridium botulinum A str. Hall]
 gi|153939802|ref|YP_001392888.1| DNA-binding protein HU [Clostridium botulinum F str. Langeland]
 gi|168181003|ref|ZP_02615667.1| DNA-binding protein HU [Clostridium botulinum NCTC 2916]
 gi|170755876|ref|YP_001783174.1| DNA-binding protein HU [Clostridium botulinum B1 str. Okra]
 gi|170761658|ref|YP_001788874.1| DNA-binding protein HU [Clostridium botulinum A3 str. Loch Maree]
 gi|226950990|ref|YP_002806081.1| DNA-binding protein HU [Clostridium botulinum A2 str. Kyoto]
 gi|148290958|emb|CAL85094.1| DNA-binding protein HU [Clostridium botulinum A str. ATCC 3502]
 gi|152927902|gb|ABS33402.1| DNA-binding protein HU [Clostridium botulinum A str. ATCC 19397]
 gi|152932952|gb|ABS38451.1| DNA-binding protein HU [Clostridium botulinum A str. Hall]
 gi|152935698|gb|ABS41196.1| DNA-binding protein HU [Clostridium botulinum F str. Langeland]
 gi|169121088|gb|ACA44924.1| DNA-binding protein HU [Clostridium botulinum B1 str. Okra]
 gi|169408647|gb|ACA57058.1| DNA-binding protein HU [Clostridium botulinum A3 str. Loch Maree]
 gi|182668057|gb|EDT80036.1| DNA-binding protein HU [Clostridium botulinum NCTC 2916]
 gi|226841522|gb|ACO84188.1| DNA-binding protein HU [Clostridium botulinum A2 str. Kyoto]
 gi|295320865|gb|ADG01243.1| DNA-binding protein HU [Clostridium botulinum F str. 230613]
 gi|322807859|emb|CBZ05434.1| DNA-binding protein HBsu [Clostridium botulinum H04402 065]
          Length = 92

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ S++++  L++KD+   +      + ++   GE +++  F TF  +++  RVG
Sbjct: 1  MNKSELITSMAEKSKLTKKDAETALKAFIESVEEALEGGEKVQLVGFGTFETRERAERVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T +E+ I      VFKA   LK+++  
Sbjct: 61 RNPRTKEEITIPASIAPVFKAGKELKEKVNK 91


>gi|88798959|ref|ZP_01114540.1| integration host factor beta subunit [Reinekea sp. MED297]
 gi|88778186|gb|EAR09380.1| integration host factor beta subunit [Reinekea sp. MED297]
          Length = 101

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I    G LS +D    + T+ + +  +   GE I+I  F +F +  +  RV
Sbjct: 6  VTKSELIERIVDRQGQLSVRDVELAIKTMLDHMAQALAEGERIEIRGFGSFSLHYRSPRV 65

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T + V+++ + V  FK    L++ + + +
Sbjct: 66 GRNPKTGESVELEGKYVPHFKPGKELRESVNESL 99


>gi|121730318|ref|ZP_01682684.1| integration host factor, alpha subunit [Vibrio cholerae V52]
 gi|121627928|gb|EAX60500.1| integration host factor, alpha subunit [Vibrio cholerae V52]
          Length = 85

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 50/84 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+++L +++ ++ G+S++D+   V   F EI  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAELAEALFEQLGMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASS 87
          GRN +T +++ I  RRVV F+   
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQ 85


>gi|73542253|ref|YP_296773.1| integration host factor subunit beta [Ralstonia eutropha JMP134]
 gi|123760154|sp|Q46Y54|IHFB_RALEJ RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|72119666|gb|AAZ61929.1| Integration host factor, beta subunit [Ralstonia eutropha JMP134]
          Length = 137

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 4/112 (3%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV+ ++  F  L  +D+   V T+ + + D+   G  I+I  F +F + ++  RV
Sbjct: 1   MTKSELVEKLAARFPQLLLRDADISVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM---RGRKCNKDDVTSPSG 112
           GRN ++ + V +  +RV  FKA   L++R+  ++    G   N     +PSG
Sbjct: 61  GRNPKSGERVLVPEKRVPHFKAGKELRERVDRNLTPSSGGSGNGHLTGTPSG 112


>gi|294666559|ref|ZP_06731800.1| histone-like protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292603703|gb|EFF47113.1| histone-like protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 122

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 48/89 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L+  ++    +S+ ++ R V  + +EI  +  +G+A+ +  F TF V+++  R G
Sbjct: 33  MNKTELIDGVAAAADISKAEAGRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERTG 92

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T   +KI   +   FKA    K  +
Sbjct: 93  RNPKTGDSIKIAASKNPAFKAGKAPKDAV 121


>gi|163759219|ref|ZP_02166305.1| integration host factor alpha subunit [Hoeflea phototrophica
           DFL-43]
 gi|162283623|gb|EDQ33908.1| integration host factor alpha subunit [Hoeflea phototrophica
           DFL-43]
          Length = 107

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/102 (48%), Positives = 72/102 (70%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KTITR+DL +++ ++ GLSR +S   V  +  E+ +S VRGE++K+SSFATF V++K  
Sbjct: 3   GKTITRADLAEAVFRKVGLSRTESAELVEMVLEEVSNSIVRGESVKLSSFATFQVREKKE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           R+GRN +T +EV I PRRV+ FKAS++LK R++     RK  
Sbjct: 63  RIGRNPKTGEEVPISPRRVMTFKASNVLKNRVLKGHLARKGK 104


>gi|53805111|ref|YP_113209.1| integration host factor subunit alpha [Methylococcus capsulatus
           str. Bath]
 gi|81682701|sp|Q60AY8|IHFA_METCA RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|53758872|gb|AAU93163.1| integration host factor, alpha subunit [Methylococcus capsulatus
           str. Bath]
          Length = 110

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 1/104 (0%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++D+V+ +  E GL+++D+   V   F  I  S   G ++K+S F  F ++ K  R 
Sbjct: 2   ALTKADMVERLFSELGLNKRDAKELVDQFFEVIKASLESGRSVKLSGFGNFDLRDKRQRP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           GRN +T +E+ I  RRVV FKA   LK  + + ++  +  K D 
Sbjct: 62  GRNPKTGEEIPITARRVVTFKAGQKLKATV-EALQEPELGKLDA 104


>gi|30250139|ref|NP_842209.1| histone-like DNA-binding protein [Nitrosomonas europaea ATCC
          19718]
 gi|30139246|emb|CAD86119.1| Bacterial histone-like DNA-binding protein [Nitrosomonas europaea
          ATCC 19718]
          Length = 90

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+  I++   L++  +   +    + I D+  + +++ +  F TF V ++ +R G
Sbjct: 1  MNKSDLIDVIAQSADLTKAQAGNALDGALSAIKDALGKNDSVTLVGFGTFKVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  E+KI   +V  F A   LK  + 
Sbjct: 61 RNPRTGAEIKIKAAKVPKFTAGKALKDAVN 90


>gi|119476516|ref|ZP_01616867.1| integration host factor alpha subunit [marine gamma
          proteobacterium HTCC2143]
 gi|119450380|gb|EAW31615.1| integration host factor alpha subunit [marine gamma
          proteobacterium HTCC2143]
          Length = 102

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 51/91 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S + + + +E GL+++++   V   F EI  S    E +K+S F  F ++ K  R 
Sbjct: 3  ALTKSVMAEKLYEELGLNKREAKEVVEHFFEEIRYSLEDNEQVKLSGFGNFDLRDKSQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  RRVV F+    LK R+ 
Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKVRVE 93


>gi|121610039|ref|YP_997846.1| integration host factor subunit alpha [Verminephrobacter eiseniae
           EF01-2]
 gi|121554679|gb|ABM58828.1| histone family protein DNA-binding protein [Verminephrobacter
           eiseniae EF01-2]
          Length = 108

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 58/98 (59%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +  +T++ L + +  + GL++++S   +  +F+ I  S V G+ +K+S F  F ++ K  
Sbjct: 11  TPALTKAQLAELLFDQIGLNKRESKDMIDAVFDLIAQSLVDGKDVKLSGFGNFQIRTKAP 70

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           R GRN +T + + I  RRVV+F ASS LK++I     G
Sbjct: 71  RPGRNPRTGEAIPIQARRVVIFHASSKLKEQIQTAAIG 108


>gi|15839028|ref|NP_299716.1| integration host factor subunit beta [Xylella fastidiosa 9a5c]
 gi|9107628|gb|AAF85236.1|AE004052_11 integration host factor, beta subunit [Xylella fastidiosa 9a5c]
          Length = 126

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 1/101 (0%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L++ ++K    L   D    V +L   +  +   G+ I+I  F +F +  +  R 
Sbjct: 23  MTKSELIEILTKRQAHLKSDDVDLAVKSLLEMMGGALSEGDRIEIRGFGSFSLHYRPPRC 82

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           GRN +T + V +  + V  FK    L++R+   +   +C  
Sbjct: 83  GRNPKTGESVALPGKYVPHFKPGKELRERVASVVPLAECGD 123


>gi|254470707|ref|ZP_05084110.1| integration host factor, beta subunit [Pseudovibrio sp. JE062]
 gi|211959849|gb|EEA95046.1| integration host factor, beta subunit [Pseudovibrio sp. JE062]
          Length = 99

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 57/94 (60%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV++I++    L ++D    V  + +E+ ++ +RG+ +++  F  F VK + +RV
Sbjct: 1  MIKSELVQTIAERNPHLYQRDVENIVNAILDEVTEALMRGDRVELRGFGAFSVKNRPARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T Q+V++  + V  FK    +++R+ D  
Sbjct: 61 GRNPRTGQKVEVGEKFVPFFKTGKEMRERLNDGT 94


>gi|146337267|ref|YP_001202315.1| integration host factor subunit beta [Bradyrhizobium sp. ORS278]
 gi|166918541|sp|A4YJI9|IHFB_BRASO RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|146190073|emb|CAL74065.1| Integration host factor beta-subunit (IHF-beta) [Bradyrhizobium
          sp. ORS278]
          Length = 105

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  + +EI  +  RG+ +++  F  F VK + +R 
Sbjct: 1  MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T   V +D + V  FK    +++R+  D  
Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRDNP 95


>gi|197117663|ref|YP_002138090.1| histone-like protein [Geobacter bemidjiensis Bem]
 gi|197087023|gb|ACH38294.1| histone-like protein [Geobacter bemidjiensis Bem]
          Length = 91

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I++E  L++ D+ + +  + + + +    G+ + +  F TF V ++ +R G
Sbjct: 1  MNKAELVSAIAEEAQLTKVDAEKSLMGILDALTNCLATGDKVTLVGFGTFSVAERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT ++++I       FK  + LK  + 
Sbjct: 61 QNPQTGKKIEIAASSAPKFKPGNTLKDLVN 90


>gi|40288405|gb|AAR84227.1| integration host factor alpha subunit [Pantoea stewartii subsp.
          stewartii DC283]
          Length = 99

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 53/93 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+C +   GE +K+S F    +  K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVCRALENGEQVKLSGFGNSDLCDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T +++ I  RRVV F+    LK R+ + 
Sbjct: 62 GRNPETGEDIPITARRVVTFRPGQKLKSRVENA 94


>gi|95930290|ref|ZP_01313028.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM
          684]
 gi|95133753|gb|EAT15414.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM
          684]
          Length = 93

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 60/92 (65%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV+++  + G S+K+S   V T+F  + D+   G+ IKI+ F  F VKQK +R G
Sbjct: 1  MTKADLVENVYFKTGFSKKESAEIVETVFELMKDTLEDGDKIKIAGFGNFVVKQKATRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN QT +E++I  R+++ FK S +LK  I + 
Sbjct: 61 RNPQTGEEIEISSRKILTFKPSQVLKTAINEG 92


>gi|54309614|ref|YP_130634.1| putative integration host factor, beta subunit [Photobacterium
          profundum SS9]
 gi|81697345|sp|Q6LPE4|IHFB_PHOPR RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|46914052|emb|CAG20832.1| putative integration host factor, beta subunit [Photobacterium
          profundum SS9]
          Length = 96

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 1/96 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + S++  LS K     +  +   +  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLCSQQTHLSAKQVEDAIKEILEHMAGTLAEGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T  +V++D + V  FK    L+ R+   +  
Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRVNAAIAA 96


>gi|163734570|ref|ZP_02142009.1| integration host factor subunit beta [Roseobacter litoralis Och
          149]
 gi|161392063|gb|EDQ16393.1| integration host factor subunit beta [Roseobacter litoralis Och
          149]
          Length = 94

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L ++D  R V T+F E+ D+  RG+ +++  F  F VK++ +RV
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTIFEEVTDAMARGDRVELRGFGAFSVKKRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V ++ + V  FK   +L+ R+  
Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRLNG 92


>gi|312796427|ref|YP_004029349.1| DNA-binding protein HU [Burkholderia rhizoxinica HKI 454]
 gi|312168202|emb|CBW75205.1| DNA-binding protein HU [Burkholderia rhizoxinica HKI 454]
          Length = 90

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+++  +S+  + R +  L + + ++  +G ++ +  F TF +  + +R G
Sbjct: 1  MNKTELIDHIAEQADISKAAAGRALDALIDGVKETLKKGGSVTLVGFGTFALGTRTARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI+  +V  F+A   LK  + 
Sbjct: 61 RNPRTGAAIKIEAAKVPKFRAGKALKDALN 90


>gi|268590154|ref|ZP_06124375.1| integration host factor, beta subunit [Providencia rettgeri DSM
          1131]
 gi|291314429|gb|EFE54882.1| integration host factor, beta subunit [Providencia rettgeri DSM
          1131]
          Length = 95

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  LS K     V  +   + D+   GE I++  F +F +  +  RV
Sbjct: 1  MTKSELIERLASQQSHLSAKTVEEAVKEILEHMADTLANGERIEVRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R+ 
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91


>gi|325279829|ref|YP_004252371.1| histone family protein DNA-binding protein [Odoribacter
          splanchnicus DSM 20712]
 gi|324311638|gb|ADY32191.1| histone family protein DNA-binding protein [Odoribacter
          splanchnicus DSM 20712]
          Length = 89

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 52/88 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+ +I+++ GL++ DS + +      + ++   G+ + +  F +F V ++ +R G
Sbjct: 1  MNKAQLIDAIAEKAGLTKADSKKALEAFVETVGEALKGGDKVALIGFGSFSVSERSARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN QT + + I  ++VV FKA + L ++
Sbjct: 61 RNPQTGKTITIPAKKVVKFKAGAELAEK 88


>gi|296313665|ref|ZP_06863606.1| DNA-binding protein HU-beta [Neisseria polysaccharea ATCC 43768]
 gi|296839808|gb|EFH23746.1| DNA-binding protein HU-beta [Neisseria polysaccharea ATCC 43768]
          Length = 89

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I++E G+S+  + + +    N + ++  +G+ + +  F TF+V ++  R G
Sbjct: 1  MNKSELIEAIAQEAGISKVAAQKALDATTNAVTNALKQGDTVTLVGFGTFYVGERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I   +   F+A   LK  +
Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKALKDAL 89


>gi|296136321|ref|YP_003643563.1| histone family protein DNA-binding protein [Thiomonas intermedia
           K12]
 gi|294340557|emb|CAZ88942.1| Integration host factor subunit beta (IHF-beta) [Thiomonas sp. 3As]
 gi|295796443|gb|ADG31233.1| histone family protein DNA-binding protein [Thiomonas intermedia
           K12]
          Length = 110

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +TRSDLV+ ++ +F  L+ +D+   V T+ + +  +   G  ++I  F +F V  + +R+
Sbjct: 1   MTRSDLVEILAAQFPQLTHRDAELSVKTILDALAQALDDGHRVEIRGFGSFSVSHRSARI 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSG 112
           GRN ++ ++V +  +R+  FK    L++ +  D +  +   D    P  
Sbjct: 61  GRNPRSGEQVAVPEKRIPHFKPGKTLRELV--DYQAEERKVDGRNQPEN 107


>gi|241663131|ref|YP_002981491.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12D]
 gi|240865158|gb|ACS62819.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12D]
          Length = 90

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  ++ +  +S+  + R +  L + I D+   G ++ +  F TF V ++ SR G
Sbjct: 1  MNKTDLIDHVAAQTDMSKAAAGRAIDALIDGIKDALCEGGSVTLVGFGTFLVGKRSSRNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   + I+  +V  FK    LK  + 
Sbjct: 61 RNPRTGAAITIEGGKVAKFKPGKALKDALN 90


>gi|303242803|ref|ZP_07329270.1| histone family protein DNA-binding protein [Acetivibrio
          cellulolyticus CD2]
 gi|302589653|gb|EFL59434.1| histone family protein DNA-binding protein [Acetivibrio
          cellulolyticus CD2]
          Length = 92

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 53/91 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV SI+ + GL++K+S   +  L + + ++  +G+ + +  F TF V+ + +R G
Sbjct: 1  MNKTELVNSIASKSGLNKKNSEAALNALISSVEETLEKGDKVVLVGFGTFEVRNRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E+ I   +  VFKA   LK  I  
Sbjct: 61 RNPQTKKEITIPASKAPVFKAGKGLKDIINK 91


>gi|241764284|ref|ZP_04762314.1| histone family protein DNA-binding protein [Acidovorax delafieldii
           2AN]
 gi|241366353|gb|EER60883.1| histone family protein DNA-binding protein [Acidovorax delafieldii
           2AN]
          Length = 116

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 54/96 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +  +T++ L   +  + GL++++S   +   F+ I    V G+ +K+S F  F ++ K  
Sbjct: 21  TPALTKAQLADLLFDQIGLNKRESKDMIDAFFDLIAQRLVDGKDVKLSGFGNFQIRTKAP 80

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           R GRN +T + + I  RRVV F ASS LK++I   +
Sbjct: 81  RPGRNPRTGEAIPIQARRVVTFHASSKLKEQIQAAV 116


>gi|90421919|ref|YP_530289.1| integration host factor subunit beta [Rhodopseudomonas palustris
          BisB18]
 gi|123275679|sp|Q21CB6|IHFB_RHOPB RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|90103933|gb|ABD85970.1| integration host factor, beta subunit [Rhodopseudomonas palustris
          BisB18]
          Length = 101

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  + +EI  +  RG+ +++  F  F VK + +R 
Sbjct: 1  MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T   V +D + V  FK    +++R+  D   
Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRDTGA 96


>gi|259906948|ref|YP_002647304.1| DNA-binding protein HU-alpha [Erwinia pyrifoliae Ep1/96]
 gi|224962570|emb|CAX54025.1| DNA-binding protein HU-alpha [Erwinia pyrifoliae Ep1/96]
 gi|283476742|emb|CAY72577.1| DNA-binding protein HU-alpha [Erwinia pyrifoliae DSM 12163]
          Length = 90

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V Q+  R+G
Sbjct: 1  MNKTQLIDIIADKADLSKTQAKAALESTLTAITESLKEGDAVQLVGFGTFKVNQRAGRIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  E++I    V  F +   LK+ + 
Sbjct: 61 RNPKTGNEIQIAASTVPAFTSGKALKEAVK 90


>gi|192359929|ref|YP_001980677.1| DNA-binding protein HU [Cellvibrio japonicus Ueda107]
 gi|190686094|gb|ACE83772.1| DNA-binding protein HU [Cellvibrio japonicus Ueda107]
          Length = 91

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D+V +++    LS   +   V+    +I ++  RGE++ +  F +F V ++ +R G
Sbjct: 1  MNKTDIVVAVANTVELSAHKADLVVSAFVEQITNALARGESVALLGFGSFQVSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + ++I   + V FKA   LK  + +
Sbjct: 61 RNPQTGEAIQIAASKSVSFKAGKALKDAVNE 91


>gi|332975691|gb|EGK12576.1| integration host factor subunit alpha [Psychrobacter sp.
          1501(2011)]
          Length = 105

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 59/93 (63%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T+T++D++  +  +FG +R+     V + F+EI D+ V G  +K+S F  F +K K SR
Sbjct: 6  ETLTKADIIDHLVSKFGFTRQQGRMLVDSFFDEIYDNLVEGRDVKLSGFGNFILKDKKSR 65

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           GRN +T +EV+I  RRVV FKA   L++++  
Sbjct: 66 PGRNPKTGEEVQISARRVVTFKAGQKLRRQVEG 98


>gi|309781951|ref|ZP_07676682.1| DNA-binding protein HU-beta [Ralstonia sp. 5_7_47FAA]
 gi|308919295|gb|EFP64961.1| DNA-binding protein HU-beta [Ralstonia sp. 5_7_47FAA]
          Length = 90

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  ++ +  +S+  + R +  L + I D+   G ++ +  F TF V ++ SR G
Sbjct: 1  MNKTDLIDHVAAQTDMSKAAAGRAIDALIDGIKDALCDGGSVTLVGFGTFLVGKRSSRNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   + I+  +V  FK    LK  + 
Sbjct: 61 RNPRTGAAITIEGGKVAKFKPGKALKDALN 90


>gi|283784266|ref|YP_003364131.1| DNA-binding protein HU-beta [Citrobacter rodentium ICC168]
 gi|282947720|emb|CBG87275.1| DNA-binding protein HU-beta [Citrobacter rodentium ICC168]
          Length = 95

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + +S   G+ + +  F TF VK++ +R G
Sbjct: 6  VNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFSVKERAARTG 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F+A   LK  + 
Sbjct: 66 RNPQTGKEITIAAAKVPGFRAGKALKDAVN 95


>gi|258621310|ref|ZP_05716344.1| integration host factor beta subunit [Vibrio mimicus VM573]
 gi|258625366|ref|ZP_05720263.1| integration host factor beta subunit [Vibrio mimicus VM603]
 gi|262166044|ref|ZP_06033781.1| integration host factor beta subunit [Vibrio mimicus VM223]
 gi|262171092|ref|ZP_06038770.1| integration host factor beta subunit [Vibrio mimicus MB-451]
 gi|258582357|gb|EEW07209.1| integration host factor beta subunit [Vibrio mimicus VM603]
 gi|258586698|gb|EEW11413.1| integration host factor beta subunit [Vibrio mimicus VM573]
 gi|261892168|gb|EEY38154.1| integration host factor beta subunit [Vibrio mimicus MB-451]
 gi|262025760|gb|EEY44428.1| integration host factor beta subunit [Vibrio mimicus VM223]
          Length = 92

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + +++  LS K+    V  +   +  +   GE I+I  F +F +  +  R+
Sbjct: 1  MTKSELIERLCAEQTHLSAKEIEDAVKNILEHMASTLEAGERIEIRGFGSFSLHYREPRM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L++R+ 
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91


>gi|118602405|ref|YP_903620.1| histone family protein DNA-binding protein [Candidatus Ruthia
          magnifica str. Cm (Calyptogena magnifica)]
 gi|118567344|gb|ABL02149.1| histone family protein DNA-binding protein [Candidatus Ruthia
          magnifica str. Cm (Calyptogena magnifica)]
          Length = 91

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    LS+ D++R +    + I  +    + ++++ F +F V+ + +R G
Sbjct: 1  MNKSELIDAIALAANLSKVDASRALNATTDAITGAMASSDGVQLTGFGSFVVRNRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT   ++I   +V  FKA   LK+ +  
Sbjct: 61 RNPQTGATIQIKASKVAAFKAGKALKEAVNK 91


>gi|83854722|ref|ZP_00948252.1| integration host factor beta subunit [Sulfitobacter sp. NAS-14.1]
 gi|83941245|ref|ZP_00953707.1| integration host factor beta subunit [Sulfitobacter sp. EE-36]
 gi|83842565|gb|EAP81732.1| integration host factor beta subunit [Sulfitobacter sp. NAS-14.1]
 gi|83847065|gb|EAP84940.1| integration host factor beta subunit [Sulfitobacter sp. EE-36]
          Length = 94

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+     L ++D  R V T+F EI  +   G+ +++  F  F VK++ +RV
Sbjct: 1  MIRSELIQKIADDNPHLYQRDVERIVNTIFEEITGAMSDGDRVELRGFGAFSVKKRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V ++ + V  FK   +L+ R+  +
Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRLNGN 93


>gi|86357227|ref|YP_469119.1| nucleoid DNA-binding protein [Rhizobium etli CFN 42]
 gi|118255|sp|P02348|DBH5_RHILE RecName: Full=DNA-binding protein HRL53; AltName: Full=HU-like
          protein; AltName: Full=Px
 gi|3694946|gb|AAC62499.1| HU-like protein [Rhizobium leguminosarum]
 gi|29650883|gb|AAO86518.1| Hurl [Rhizobium leguminosarum bv. viciae]
 gi|86281329|gb|ABC90392.1| bacterial nucleoid DNA-binding protein [Rhizobium etli CFN 42]
          Length = 91

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ GL++ D+   V  +F+ +         I+++ F +F V  + +  G
Sbjct: 1  MNKNELVSAVAEKAGLTKSDAASAVDAVFDVVQAELKNKGDIRLAGFGSFTVSHRAATKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T  EV I  R V  F     LK  +  
Sbjct: 61 RNPSTGAEVDIPARNVPKFTPGKGLKDAVNG 91


>gi|189499304|ref|YP_001958774.1| histone family protein DNA-binding protein [Chlorobium
          phaeobacteroides BS1]
 gi|189494745|gb|ACE03293.1| histone family protein DNA-binding protein [Chlorobium
          phaeobacteroides BS1]
          Length = 90

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++++LV+ I+ + GL++ D+ R V+   N +      G+ I +  F TF   ++ +R G
Sbjct: 1  MSKAELVEKIASQAGLTKADAERAVSAFVNVVTAGLKAGDDITLVGFGTFSTGERAARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + + I  ++VV FKA   L+  + 
Sbjct: 61 RNPQTGETISIAAKKVVKFKAGKALRDEVA 90


>gi|296133003|ref|YP_003640250.1| histone family protein DNA-binding protein [Thermincola sp. JR]
 gi|296031581|gb|ADG82349.1| histone family protein DNA-binding protein [Thermincola potens
          JR]
          Length = 94

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T++DLV  ++++   L +KD  + V  +F  I ++  RGE  +   F TF VKQ+ +R 
Sbjct: 1  MTKTDLVAQVAEKVSNLKKKDCEKAVNAVFQSIQEALARGEKAQFIGFGTFEVKQRKARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN QT +E+KI   +V VFKA   LK  +  
Sbjct: 61 GRNPQTGKEIKIPASKVPVFKAGKALKDAVAK 92


>gi|163757832|ref|ZP_02164921.1| putative integration host factor beta subunit [Hoeflea
          phototrophica DFL-43]
 gi|162285334|gb|EDQ35616.1| putative integration host factor beta subunit [Hoeflea
          phototrophica DFL-43]
          Length = 96

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV++++     L  +D    V  + +EI D+  +G  +++  F  F VK +  R 
Sbjct: 1  MIKSELVQAVAARNPHLYHRDVENIVNAVLDEITDALSQGTRVELRGFGAFSVKNRPPRS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T + V ++ + V  FK    L++R+  D +
Sbjct: 61 GRNPRTGEPVFVEEKWVPFFKTGKELRERLNPDDK 95


>gi|159043576|ref|YP_001532370.1| integration host factor subunit beta [Dinoroseobacter shibae DFL
          12]
 gi|189045035|sp|A8LSF5|IHFB_DINSH RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|157911336|gb|ABV92769.1| integration host factor, beta subunit [Dinoroseobacter shibae DFL
          12]
          Length = 95

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ ++ +   L ++D  R V T+F EI ++   G+ +++  F  F VK + +R 
Sbjct: 1  MIRSELIQIVADENPHLYQRDVERIVNTVFEEIIEAMSNGDRVELRGFGAFSVKHRDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V ++ + V  FK   +L+ R+  
Sbjct: 61 GRNPRTGEAVAVEAKSVPFFKTGKLLRDRLNG 92


>gi|159184652|ref|NP_354199.2| integration host factor subunit alpha [Agrobacterium tumefaciens
           str. C58]
 gi|23821752|sp|Q8UG61|IHFA_AGRT5 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|159139950|gb|AAK86984.2| integration host factor alpha subunit [Agrobacterium tumefaciens
           str. C58]
          Length = 112

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 50/103 (48%), Positives = 75/103 (72%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +S+ ++ GLSR +S   V T+ +EIC++  RGE +K+SSFATF +++K  
Sbjct: 3   GKTVTRADLAESVFRKVGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           R+GRN +T +EV I PRRV+ FKAS++LK+RI+     RK  +
Sbjct: 63  RIGRNPKTGEEVPISPRRVMTFKASNVLKQRILKAHTARKAKQ 105


>gi|332653755|ref|ZP_08419499.1| DNA-binding protein HU [Ruminococcaceae bacterium D16]
 gi|332516841|gb|EGJ46446.1| DNA-binding protein HU [Ruminococcaceae bacterium D16]
          Length = 91

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ +  LS+KD+   +T     I ++  R E +++  F +F VK + +RVG
Sbjct: 1  MNKTELINAVADKTQLSKKDAEAAITATVEAIAEALTREEKVQLVGFGSFEVKTRAARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T  E++I   +  VFKA   LK  +  
Sbjct: 61 RNPKTGTEIEIPQTKTPVFKAGKALKDAVAG 91


>gi|237746607|ref|ZP_04577087.1| DNA-binding protein Hu-beta [Oxalobacter formigenes HOxBLS]
 gi|229377958|gb|EEO28049.1| DNA-binding protein Hu-beta [Oxalobacter formigenes HOxBLS]
          Length = 90

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+K   +S+  + R +  +   I ++  +  ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIEYIAKSADISKAAAARSLDAVMEAITETLKKDGSVTLVGFGTFSVGERAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E+KI   RV  F+A  +LK  + 
Sbjct: 61 RNPRTGEEIKIKSARVPKFRAGKLLKDAVN 90


>gi|170728675|ref|YP_001762701.1| histone family protein DNA-binding protein [Shewanella woodyi
          ATCC 51908]
 gi|169814022|gb|ACA88606.1| histone family protein DNA-binding protein [Shewanella woodyi
          ATCC 51908]
          Length = 90

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  +++   L++ ++ R + +    + ++   G+ I I  F +F    + +R G
Sbjct: 1  MNKTELVAKMAEHAELTKAEAARALKSFEETVTEAMKNGDKISIVGFGSFETSSRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I    V  FKA   LK  + 
Sbjct: 61 RNPQTGKEIQIPAATVPKFKAGKTLKDSVN 90


>gi|114564684|ref|YP_752198.1| histone family protein DNA-binding protein [Shewanella
          frigidimarina NCIMB 400]
 gi|114335977|gb|ABI73359.1| histone family protein DNA-binding protein [Shewanella
          frigidimarina NCIMB 400]
          Length = 90

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  I++   L++ ++ R + +    + ++   G+ I I  F +F   Q+ +R G
Sbjct: 1  MNKSELIAKIAENAELTKAEAGRALKSFEEAVTEAMKNGDKISIVGFGSFETTQRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I    V  FKA   LK  + 
Sbjct: 61 RNPQTGKEIQIAAATVPKFKAGKTLKDSVN 90


>gi|228942908|ref|ZP_04105421.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228976135|ref|ZP_04136633.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228783586|gb|EEM31667.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228816760|gb|EEM62872.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner
          ATCC 10792]
          Length = 93

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 52/92 (56%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +++L K ++++  L++KD+      + N I  +    E ++I  F TF V+++ +R
Sbjct: 2  QKMNKTELTKVVAEKAELTQKDAAAATQAVLNTITSALTNEEKVQILGFGTFEVRERSAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E++I   +   FKA   LK+ + 
Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93


>gi|254282572|ref|ZP_04957540.1| integration host factor, alpha subunit [gamma proteobacterium
          NOR51-B]
 gi|219678775|gb|EED35124.1| integration host factor, alpha subunit [gamma proteobacterium
          NOR51-B]
          Length = 104

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 51/92 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S++ + + +E GL+++++   V   F EI       E +K+S F  F ++ K  R 
Sbjct: 3  ALTKSEMAEKLFEELGLNKREAKELVEQFFEEIRICLENNEQMKLSGFGNFDLRDKSQRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +E+ I  RRVV F+    LK R+  
Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKARVEQ 94


>gi|323519066|gb|ADX93447.1| nucleoid DNA-binding protein [Acinetobacter baumannii
          TCDC-AB0715]
          Length = 90

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K I+    L++  +T  +  + + I  +   G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSELIKHIASSASLTQAQATAALNAVESGISKALAAGDDVALIGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E+KI   +V  FKA   LK+ + 
Sbjct: 61 RNPKTGEELKIAAAKVPSFKAGKALKEAVK 90


>gi|170744277|ref|YP_001772932.1| integration host factor subunit alpha [Methylobacterium sp. 4-46]
 gi|226709735|sp|B0UR46|IHFA_METS4 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|168198551|gb|ACA20498.1| integration host factor, alpha subunit [Methylobacterium sp. 4-46]
          Length = 104

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 4/105 (3%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +++ +  GLSR +S   V T+ +EIC     GE +K+SSF +F V+ KG 
Sbjct: 3   GKTVTRADLTEAVYQRVGLSRTESAALVETVLSEICTCLASGETVKLSSFGSFVVRDKGK 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           RVGRN +T  EV I+PRRV+VFK S++LK RI     G     DD
Sbjct: 63  RVGRNPKTGVEVAIEPRRVMVFKPSNVLKARIN----GGAAEPDD 103


>gi|296491988|ref|YP_003662455.1| DNA-binding protein HU-beta [Xenorhabdus nematophila ATCC 19061]
 gi|289176875|emb|CBJ93046.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Xenorhabdus
          nematophila ATCC 19061]
          Length = 90

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  ++++  +S+  +   V  L N + +    G  + ++ F TF VK++ +R G
Sbjct: 1  MNKSELIMKVAEDADISKAKAEAAVNALINSVTEELKAGGTVALTGFGTFQVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++I   ++  FKA   LK  + 
Sbjct: 61 RNPQTGENIQIAAAKIPGFKAGKGLKDSVN 90


>gi|261867382|ref|YP_003255304.1| DNA-binding protein HU [Aggregatibacter actinomycetemcomitans
          D11S-1]
 gi|293390874|ref|ZP_06635208.1| DNA-binding protein HU [Aggregatibacter actinomycetemcomitans
          D7S-1]
 gi|261412714|gb|ACX82085.1| DNA-binding protein HU [Aggregatibacter actinomycetemcomitans
          D11S-1]
 gi|290951408|gb|EFE01527.1| DNA-binding protein HU [Aggregatibacter actinomycetemcomitans
          D7S-1]
          Length = 90

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+    L++K +   +    + I  S  +GEA+++  F TF V  + +R G
Sbjct: 1  MNKTDLIDAIASSAELNKKQAKAALEATLDAITGSLKKGEAVQLIGFGTFKVNARKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E+KI   +V  F +   LK  + 
Sbjct: 61 RNPQTGAEIKIAASKVPAFVSGKALKDAVK 90


>gi|322419725|ref|YP_004198948.1| histone family protein DNA-binding protein [Geobacter sp. M18]
 gi|320126112|gb|ADW13672.1| histone family protein DNA-binding protein [Geobacter sp. M18]
          Length = 92

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 57/90 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I ++ G S+K+S   V T+F+ I  +   G+ IKI+ F  F VK+K  R G
Sbjct: 1  MTKADIVEKIYEKVGFSKKESAELVETVFDLIKSTLEDGDKIKIAGFGNFVVKEKSDRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I  R+++ FK S +LK  I 
Sbjct: 61 RNPQTGEEITIVARKILTFKPSQVLKSAIN 90


>gi|86136033|ref|ZP_01054612.1| integration host factor beta subunit [Roseobacter sp. MED193]
 gi|85826907|gb|EAQ47103.1| integration host factor beta subunit [Roseobacter sp. MED193]
          Length = 94

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L ++D  R V T+F E+ D+  RG+ +++  F  F VKQ+ SRV
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMSRGDRVELRGFGAFSVKQRDSRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V+++ + V  FK   +L+ R+  
Sbjct: 61 GRNPRTGETVQVEEKHVPFFKTGKLLRDRLNG 92


>gi|116251457|ref|YP_767295.1| DNA-binding protein HU [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256105|emb|CAK07186.1| putative DNA-binding protein HU [Rhizobium leguminosarum bv.
          viciae 3841]
          Length = 91

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ GL++ D+   V  +F+ +         I+++ F +F V  + +  G
Sbjct: 1  MNKNELVSAVAEKAGLTKSDAASAVDAVFDVVQAELKNKGDIRLAGFGSFTVSHRAATKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T  EV I  R V  F     LK  + 
Sbjct: 61 RNPSTGAEVDIPARNVPKFTPGKGLKDAVN 90


>gi|170750364|ref|YP_001756624.1| histone family protein DNA-binding protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|226709734|sp|B1LZ99|IHFA_METRJ RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|170656886|gb|ACB25941.1| histone family protein DNA-binding protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 106

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 48/105 (45%), Positives = 70/105 (66%), Gaps = 1/105 (0%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +++  + GLSR +S   V T+ +EIC     GE +K+SSF +F V+ KG 
Sbjct: 3   GKTVTRADLSEAVYHQVGLSRTESAALVETVLSEICSCLASGETVKLSSFGSFVVRSKGK 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           RVGRN +T  EV I+PR+V+VFK S++LK +I   + G   + DD
Sbjct: 63  RVGRNPKTGVEVAIEPRQVMVFKPSNVLKAKIN-GLNGAGEHDDD 106


>gi|37679485|ref|NP_934094.1| integration host factor subunit beta [Vibrio vulnificus YJ016]
 gi|61213552|sp|Q7MLX5|IHFB_VIBVY RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|37198229|dbj|BAC94065.1| bacterial nucleoid DNA-binding protein [Vibrio vulnificus YJ016]
          Length = 93

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + +++  LS K+    V  +   +  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  +V+++ + V  FK    L++R+
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERV 90


>gi|212709793|ref|ZP_03317921.1| hypothetical protein PROVALCAL_00841 [Providencia alcalifaciens
          DSM 30120]
 gi|212687604|gb|EEB47132.1| hypothetical protein PROVALCAL_00841 [Providencia alcalifaciens
          DSM 30120]
          Length = 95

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  LS K     V  +   + D+   GE I++  F +F +  +  RV
Sbjct: 1  MTKSELIERLASQQSHLSAKTVEEAVKEILEHMADTLAEGERIEVRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R+ 
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91


>gi|121602375|ref|YP_988864.1| DNA-binding protein HU-beta [Bartonella bacilliformis KC583]
 gi|120614552|gb|ABM45153.1| DNA-binding protein HU-beta [Bartonella bacilliformis KC583]
          Length = 92

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV SI+ + G+S+  +   +      + ++   G  +++  F +F V ++ +  G
Sbjct: 1  MNKSELVNSIAAKAGVSKAQAGSVLDAFIASVTEALGEGGDVRLPGFGSFEVSRRAATKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T  E+ I  R V  F A   LK+ +  
Sbjct: 61 RNPSTGAEINIPARSVPKFSAGKNLKEAVNK 91


>gi|313904045|ref|ZP_07837425.1| histone family protein DNA-binding protein [Eubacterium
          cellulosolvens 6]
 gi|313471194|gb|EFR66516.1| histone family protein DNA-binding protein [Eubacterium
          cellulosolvens 6]
          Length = 89

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 47/88 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ V+ I+++ G ++KD+  FV      I ++   G+ +    F T+ V+++ +R G
Sbjct: 1  MNKTEFVQKIAEKTGSTKKDAAAFVDAYAEVITEALKSGDKVAFPGFGTYEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN  T + ++I   +   FKA   LK  
Sbjct: 61 RNPATGETIQIAASKSPAFKAGKALKDA 88


>gi|83945692|ref|ZP_00958037.1| integration host factor beta subunit [Oceanicaulis alexandrii
          HTCC2633]
 gi|83850893|gb|EAP88753.1| integration host factor beta subunit [Oceanicaulis alexandrii
          HTCC2633]
          Length = 94

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ +++E   L +KD  R V T+  EI  +  RG+ +++  F  F V+ +  R 
Sbjct: 1  MIKSELIEKLAEENPHLYQKDLERVVNTVLEEITQALERGDRVELRGFGAFSVRNRPPRQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  + V  FK    L++R+
Sbjct: 61 GRNPRTGEPVSVKEKHVPFFKTGKELRERV 90


>gi|119945141|ref|YP_942821.1| integration host factor, alpha subunit [Psychromonas ingrahamii
          37]
 gi|166918519|sp|A1SUQ7|IHFA_PSYIN RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|119863745|gb|ABM03222.1| integration host factor, alpha subunit [Psychromonas ingrahamii
          37]
          Length = 100

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 35/95 (36%), Positives = 58/95 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++   +S + GLS++++  FV + F EI  +   GEA+KIS F  F +K K  R 
Sbjct: 2  ALTKAEIAADLSVKIGLSKREAKEFVESFFEEIKATLENGEAVKISGFGGFELKDKSERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +++ I  RRVV F+A   LK+ +  +M 
Sbjct: 62 GRNPKTGEDIPIAARRVVTFRAGQKLKELVEKNMP 96


>gi|163746487|ref|ZP_02153845.1| integration host factor, alpha subunit [Oceanibulbus indolifex
          HEL-45]
 gi|161380372|gb|EDQ04783.1| integration host factor, alpha subunit [Oceanibulbus indolifex
          HEL-45]
          Length = 92

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 61/90 (67%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DL +++ +E GLSR +S + V  +   + D+ V GE +KISSF TF V+ K +RVGRN +
Sbjct: 2  DLSEAVFREVGLSRNESAQLVEAVLEHMSDALVEGEQVKISSFGTFSVRDKTARVGRNPK 61

Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          T +EV I+PRRV+ F+ S ++K R+ +  +
Sbjct: 62 TGEEVPINPRRVLTFRPSHLMKDRVAEGNK 91


>gi|78188542|ref|YP_378880.1| histone-like DNA-binding protein [Chlorobium chlorochromatii
          CaD3]
 gi|78170741|gb|ABB27837.1| Histone-like DNA-binding protein [Chlorobium chlorochromatii
          CaD3]
          Length = 102

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 58/99 (58%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M  T T++DLV  I+ + GL++ ++   V  LF  I +S   G  I+I  F +F+++QK 
Sbjct: 1  MGNTTTKADLVAVIAHKTGLTKNETEAVVDGLFESIIESLKAGRRIEIRGFGSFNIRQKN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           R  RN +T + V++DP++V  FK S   K  + + ++G
Sbjct: 61 FRKARNPRTGESVEVDPKQVPAFKISKEFKLAVSESLKG 99


>gi|146282847|ref|YP_001173000.1| integration host factor subunit beta [Pseudomonas stutzeri A1501]
 gi|166975883|sp|A4VMF7|IHFB_PSEU5 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|145571052|gb|ABP80158.1| integration host factor, beta subunit [Pseudomonas stutzeri
          A1501]
 gi|327481185|gb|AEA84495.1| integration host factor subunit beta [Pseudomonas stutzeri DSM
          4166]
          Length = 93

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I  + GL S KD    + T+  ++  +   GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERIVTQQGLLSSKDVELAIKTMLEQMAQALATGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T Q V +D + V  FK    L+ R+ DD
Sbjct: 61 GRNPKTGQSVSLDGKFVPHFKPGKELRDRVNDD 93


>gi|15641916|ref|NP_231548.1| integration host factor subunit beta [Vibrio cholerae O1 biovar
          El Tor str. N16961]
 gi|121591425|ref|ZP_01678704.1| integration host factor, beta subunit [Vibrio cholerae 2740-80]
 gi|147673848|ref|YP_001217447.1| integration host factor subunit beta [Vibrio cholerae O395]
 gi|153819865|ref|ZP_01972532.1| integration host factor, beta subunit [Vibrio cholerae NCTC 8457]
 gi|153824201|ref|ZP_01976868.1| integration host factor, beta subunit [Vibrio cholerae B33]
 gi|153825168|ref|ZP_01977835.1| integration host factor, beta subunit [Vibrio cholerae MZO-2]
 gi|227082044|ref|YP_002810595.1| integration host factor, beta subunit [Vibrio cholerae M66-2]
 gi|229507990|ref|ZP_04397495.1| integration host factor beta subunit [Vibrio cholerae BX 330286]
 gi|229511772|ref|ZP_04401251.1| integration host factor beta subunit [Vibrio cholerae B33]
 gi|229515300|ref|ZP_04404760.1| integration host factor beta subunit [Vibrio cholerae TMA 21]
 gi|229518910|ref|ZP_04408353.1| integration host factor beta subunit [Vibrio cholerae RC9]
 gi|229521836|ref|ZP_04411253.1| integration host factor beta subunit [Vibrio cholerae TM
          11079-80]
 gi|229523934|ref|ZP_04413339.1| integration host factor beta subunit [Vibrio cholerae bv.
          albensis VL426]
 gi|229529060|ref|ZP_04418450.1| integration host factor beta subunit [Vibrio cholerae 12129(1)]
 gi|229607536|ref|YP_002878184.1| integration host factor subunit beta [Vibrio cholerae MJ-1236]
 gi|254286725|ref|ZP_04961679.1| integration host factor, beta subunit [Vibrio cholerae AM-19226]
 gi|254849002|ref|ZP_05238352.1| integration host factor subunit beta [Vibrio cholerae MO10]
 gi|255745327|ref|ZP_05419276.1| integration host factor beta subunit [Vibrio cholera CIRS 101]
 gi|261210555|ref|ZP_05924848.1| integration host factor beta subunit [Vibrio sp. RC341]
 gi|262167469|ref|ZP_06035176.1| integration host factor beta subunit [Vibrio cholerae RC27]
 gi|262404267|ref|ZP_06080822.1| integration host factor beta subunit [Vibrio sp. RC586]
 gi|297579431|ref|ZP_06941359.1| integration host factor subunit beta [Vibrio cholerae RC385]
 gi|298498049|ref|ZP_07007856.1| integration host factor, beta subunit [Vibrio cholerae MAK 757]
 gi|14194866|sp|Q9KQT4|IHFB_VIBCH RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|172047649|sp|A5F6Y4|IHFB_VIBC3 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|254803542|sp|C3LNL8|IHFB_VIBCM RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|9656449|gb|AAF95062.1| integration host factor, beta subunit [Vibrio cholerae O1 biovar
          El Tor str. N16961]
 gi|121546720|gb|EAX56896.1| integration host factor, beta subunit [Vibrio cholerae 2740-80]
 gi|126509595|gb|EAZ72189.1| integration host factor, beta subunit [Vibrio cholerae NCTC 8457]
 gi|126518277|gb|EAZ75502.1| integration host factor, beta subunit [Vibrio cholerae B33]
 gi|146315731|gb|ABQ20270.1| integration host factor, beta subunit [Vibrio cholerae O395]
 gi|149741147|gb|EDM55198.1| integration host factor, beta subunit [Vibrio cholerae MZO-2]
 gi|150423152|gb|EDN15099.1| integration host factor, beta subunit [Vibrio cholerae AM-19226]
 gi|227009932|gb|ACP06144.1| integration host factor, beta subunit [Vibrio cholerae M66-2]
 gi|227013812|gb|ACP10022.1| integration host factor, beta subunit [Vibrio cholerae O395]
 gi|229332834|gb|EEN98320.1| integration host factor beta subunit [Vibrio cholerae 12129(1)]
 gi|229337515|gb|EEO02532.1| integration host factor beta subunit [Vibrio cholerae bv.
          albensis VL426]
 gi|229340761|gb|EEO05766.1| integration host factor beta subunit [Vibrio cholerae TM
          11079-80]
 gi|229343599|gb|EEO08574.1| integration host factor beta subunit [Vibrio cholerae RC9]
 gi|229348005|gb|EEO12964.1| integration host factor beta subunit [Vibrio cholerae TMA 21]
 gi|229351737|gb|EEO16678.1| integration host factor beta subunit [Vibrio cholerae B33]
 gi|229355495|gb|EEO20416.1| integration host factor beta subunit [Vibrio cholerae BX 330286]
 gi|229370191|gb|ACQ60614.1| integration host factor beta subunit [Vibrio cholerae MJ-1236]
 gi|254844707|gb|EET23121.1| integration host factor subunit beta [Vibrio cholerae MO10]
 gi|255737157|gb|EET92553.1| integration host factor beta subunit [Vibrio cholera CIRS 101]
 gi|260840340|gb|EEX66911.1| integration host factor beta subunit [Vibrio sp. RC341]
 gi|262024166|gb|EEY42860.1| integration host factor beta subunit [Vibrio cholerae RC27]
 gi|262349299|gb|EEY98437.1| integration host factor beta subunit [Vibrio sp. RC586]
 gi|297537025|gb|EFH75858.1| integration host factor subunit beta [Vibrio cholerae RC385]
 gi|297542382|gb|EFH78432.1| integration host factor, beta subunit [Vibrio cholerae MAK 757]
 gi|327484458|gb|AEA78865.1| Integration host factor beta subunit [Vibrio cholerae LMA3894-4]
          Length = 92

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + +++  LS K+    V  +   +  +   GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLCAEQTHLSAKEIEDAVKNILEHMASTLEAGERIEIRGFGSFSLHYREPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L++R+ 
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91


>gi|289208392|ref|YP_003460458.1| integration host factor subunit beta [Thioalkalivibrio sp.
          K90mix]
 gi|288944023|gb|ADC71722.1| integration host factor, beta subunit [Thioalkalivibrio sp.
          K90mix]
          Length = 98

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++S++++   L  +D    V  L   +  +   G+ ++I  F +F +  +  R+
Sbjct: 1  MTKSELIESLAQKSPHLPARDVEMCVKALLERMSQALAHGQRVEIRGFGSFSLHFRPPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T + V +  + V  FK    L++R+ 
Sbjct: 61 GRNPKTGEGVALPGKHVPHFKPGKELRERVN 91


>gi|70724919|ref|YP_257126.1| hypothetical protein pSG3GP_17 [Sodalis glossinidius]
 gi|68697150|emb|CAI59408.1| hypothetical protein pSG3.17 [Sodalis glossinidius]
          Length = 90

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L++++S++  +S+  +   +  + + +  S   G+ +KI+ F TF VK +  R G
Sbjct: 1  MNKSHLIRAVSEKTDISKIKAGFVIDAITDAVTQSLASGDDVKITGFGTFEVKTRAERPG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I   RV  F+A   LK+ +
Sbjct: 61 RNPKTGEAMTIPAARVPAFRAGKGLKEAV 89


>gi|167768371|ref|ZP_02440424.1| hypothetical protein CLOSS21_02928 [Clostridium sp. SS2/1]
 gi|317497690|ref|ZP_07956005.1| bacterial DNA-binding protein [Lachnospiraceae bacterium
          5_1_63FAA]
 gi|167709895|gb|EDS20474.1| hypothetical protein CLOSS21_02928 [Clostridium sp. SS2/1]
 gi|291560344|emb|CBL39144.1| Bacterial nucleoid DNA-binding protein [butyrate-producing
          bacterium SSC/2]
 gi|316895024|gb|EFV17191.1| bacterial DNA-binding protein [Lachnospiraceae bacterium
          5_1_63FAA]
          Length = 91

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+K+  LS+KD+ + +    + + +   +GE I++  F TF V ++ +R G
Sbjct: 1  MNKTELVAAIAKKTELSKKDAEKALKAFTDVVAEELKKGEKIQLVGFGTFEVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN ++ + + I   +   FKA   LK  + +
Sbjct: 61 RNPRSGEVMHIAASKAPKFKAGKALKDIVNE 91


>gi|84500257|ref|ZP_00998523.1| integration host factor beta subunit [Oceanicola batsensis
          HTCC2597]
 gi|84392191|gb|EAQ04459.1| integration host factor beta subunit [Oceanicola batsensis
          HTCC2597]
          Length = 94

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L ++D  + V  +F+EI ++  RG+ +++  F  F VK++ +R 
Sbjct: 1  MIRSELIQKIADENPHLYQRDVEKIVNVIFDEIIEAMARGDRVELRGFGAFSVKKRDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V+++ + V  FK   +L+ R+  
Sbjct: 61 GRNPRTGEAVEVEEKHVPFFKTGKLLRDRLNG 92


>gi|116623390|ref|YP_825546.1| histone family protein DNA-binding protein [Candidatus Solibacter
          usitatus Ellin6076]
 gi|116226552|gb|ABJ85261.1| histone family protein DNA-binding protein [Candidatus Solibacter
          usitatus Ellin6076]
          Length = 112

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 54/92 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DL++ +S+   ++RK+S   V  +F+ I  S   G+ I+I  F +F  +Q+  R+G
Sbjct: 1  MTKADLIEEVSRVVEMTRKESEVIVEAIFDSIVRSLRTGDKIEIRGFGSFRTRQRQPRIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T   V++  +++  FK S  LK  + + 
Sbjct: 61 RNPKTGARVEVPAKKIPYFKPSKELKDVVNNS 92


>gi|187923899|ref|YP_001895541.1| histone family protein DNA-binding protein [Burkholderia
          phytofirmans PsJN]
 gi|187715093|gb|ACD16317.1| histone family protein DNA-binding protein [Burkholderia
          phytofirmans PsJN]
          Length = 90

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++  +S+  + R +  + + +  +  +G ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIDHVAQQADISKAAAGRALDAVIDGVKGTLKKGGSVTLVGFGTFAVGKRTARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   +V  F+    LK  + 
Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALKDALN 90


>gi|319407314|emb|CBI80955.1| integration host factor alpha subunit [Bartonella sp. 1-1C]
          Length = 103

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 52/100 (52%), Positives = 72/100 (72%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           SKT+TR+DL  ++ ++ GLS  +S   V  + +EIC+S VRGE +K+SSFATF V+ K  
Sbjct: 3   SKTVTRADLAGAVCRKVGLSHTESADLVELVLDEICNSLVRGEMVKLSSFATFQVRDKSE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           RVGRN +T  E  I PRRV+ FKA+++LKKRI+D  R +K
Sbjct: 63  RVGRNPKTGVEASIPPRRVITFKAANVLKKRILDTHRAKK 102


>gi|261344289|ref|ZP_05971933.1| integration host factor, beta subunit [Providencia rustigianii
          DSM 4541]
 gi|282567893|gb|EFB73428.1| integration host factor, beta subunit [Providencia rustigianii
          DSM 4541]
          Length = 95

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  LS K     V  +   + D+   GE I++  F +F +  +  RV
Sbjct: 1  MTKSELIERLASQQSHLSAKTVEEAVKEILEHMADTLASGERIEVRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R+ 
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91


>gi|197118378|ref|YP_002138805.1| integration host factor subunit alpha [Geobacter bemidjiensis
          Bem]
 gi|253700842|ref|YP_003022031.1| histone family protein DNA-binding protein [Geobacter sp. M21]
 gi|197087738|gb|ACH39009.1| integration host factor, alpha subunit [Geobacter bemidjiensis
          Bem]
 gi|251775692|gb|ACT18273.1| histone family protein DNA-binding protein [Geobacter sp. M21]
          Length = 92

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 57/90 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I ++ G S+K+S   V T+F+ I  +   G+ IKI+ F  F VK+K  R G
Sbjct: 1  MTKADIVEKIYEKVGFSKKESAELVETVFDLIKTTLEEGDKIKIAGFGNFVVKEKADRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I  R+++ FK S +LK  I 
Sbjct: 61 RNPQTGEEITIVARKILTFKPSQVLKSAIN 90


>gi|254512178|ref|ZP_05124245.1| integration host factor, beta subunit [Rhodobacteraceae bacterium
          KLH11]
 gi|221535889|gb|EEE38877.1| integration host factor, beta subunit [Rhodobacteraceae bacterium
          KLH11]
          Length = 94

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L ++D  R V T+F E+ D+  RG+ +++  F  F VK++ +RV
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMSRGDRVELRGFGAFSVKKRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V+++ + V  FK   +L+ R+  
Sbjct: 61 GRNPRTGETVQVEEKCVPFFKTGKLLRDRLNG 92


>gi|304310684|ref|YP_003810282.1| Integration host factor beta subunit [gamma proteobacterium HdN1]
 gi|301796417|emb|CBL44625.1| Integration host factor beta subunit [gamma proteobacterium HdN1]
          Length = 99

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 5   ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L++ ++ K+  LS+KD    + TL   +  +   G  I+I  F +F +  + +R 
Sbjct: 1   MTKSELIEKVASKQPQLSQKDVELAIKTLLEGMSQTLATGGRIEIRGFGSFSLHYRSART 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T + V +  + V  FK    L++R+     G 
Sbjct: 61  GRNPKTGESVDLTGKYVPHFKPGKELRERVNLGEDGA 97


>gi|262274460|ref|ZP_06052271.1| integration host factor beta subunit [Grimontia hollisae CIP
          101886]
 gi|262221023|gb|EEY72337.1| integration host factor beta subunit [Grimontia hollisae CIP
          101886]
          Length = 93

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + S++  LS K     +  +   +  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLCSQQTHLSAKQVEDAIKEILEHMATTLEEGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V++D + V  FK    L+ R+ 
Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRVN 91


>gi|299135072|ref|ZP_07028263.1| integration host factor, alpha subunit [Afipia sp. 1NLS2]
 gi|298590049|gb|EFI50253.1| integration host factor, alpha subunit [Afipia sp. 1NLS2]
          Length = 114

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 47/95 (49%), Positives = 67/95 (70%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           KT+TR DL +++ ++ GLSR +S  FV  +  EI D   +GE +K+SSF +F V++KG 
Sbjct: 5  GKTVTRVDLCEAVYQKVGLSRTESAAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGE 64

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          R+GRN +T  EV I PRRV+VFK S+ILK+RI + 
Sbjct: 65 RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINNG 99


>gi|149186061|ref|ZP_01864375.1| integration host factor alpha-subunit [Erythrobacter sp. SD-21]
 gi|148830092|gb|EDL48529.1| integration host factor alpha-subunit [Erythrobacter sp. SD-21]
          Length = 102

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 42/94 (44%), Positives = 64/94 (68%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+TR+DL ++I+++ GLSR +S   V  +  ++ D+  RGE +KIS F +F ++ K  RV
Sbjct: 9   TLTRADLAETINRKMGLSRAESLDLVEEILGKMSDALARGENVKISGFGSFVLRDKKERV 68

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           GRN +T  EV I PRRV+ F+AS +LK+RI +  
Sbjct: 69  GRNPKTGVEVPITPRRVMTFRASQLLKERIANSY 102


>gi|325292554|ref|YP_004278418.1| integration host factor subunit alpha [Agrobacterium sp. H13-3]
 gi|325060407|gb|ADY64098.1| integration host factor subunit alpha [Agrobacterium sp. H13-3]
          Length = 112

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 50/103 (48%), Positives = 75/103 (72%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +S+ ++ GLSR +S   V T+ +EIC++  RGE +K+SSFATF +++K  
Sbjct: 3   GKTVTRADLAESVFRKVGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           R+GRN +T +EV I PRRV+ FKAS++LK+RI+     RK  +
Sbjct: 63  RIGRNPKTGEEVPISPRRVMTFKASNVLKQRILKAHTARKTKQ 105


>gi|315126549|ref|YP_004068552.1| integration host factor (IHF), beta subunit, site-specific
          recombination [Pseudoalteromonas sp. SM9913]
 gi|315015063|gb|ADT68401.1| integration host factor (IHF), beta subunit, site-specific
          recombination [Pseudoalteromonas sp. SM9913]
          Length = 95

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+++++++   +  KD    V  +  ++  S    + I+I  F +F +  +  R 
Sbjct: 1  MTKSELIETLAEQHSHIPVKDVENAVKEILEQMAGSLSSSDRIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T + V++D + V  FK    L+ R+ + + 
Sbjct: 61 GRNPKTGETVELDGKHVPHFKPGKELRDRVNESIA 95


>gi|78222088|ref|YP_383835.1| histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
 gi|78193343|gb|ABB31110.1| Histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
          Length = 95

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV+ ++++   L+RKDS   V  +F+ I D+  RGE ++I  F +F V+++G+R 
Sbjct: 1  MTKSELVEQLAEKNTWLTRKDSEMIVNLVFDSISDALKRGEKVEIRGFGSFTVRERGARE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN ++   VKI  ++   FK    L++R+ 
Sbjct: 61 ARNPKSGDVVKIPAKKTPFFKTGKELRERVN 91


>gi|125470062|gb|ABN42254.1| gp50 [Sodalis phage phiSG1]
          Length = 90

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L++++S++  +S+  +   +  L   +  +   G+ + +  F TF VK +  R G
Sbjct: 1  MNKPELIRAVSEKADISQAKAGLVIDALTEAVTQTLAAGDVVSLVGFGTFEVKSRAERPG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I   RV  F+A   LK+ +
Sbjct: 61 RNPKTGEAMTIPAARVPAFRAGKGLKEAV 89


>gi|71906960|ref|YP_284547.1| integration host factor, alpha subunit [Dechloromonas aromatica
           RCB]
 gi|71846581|gb|AAZ46077.1| Integration host factor, alpha subunit [Dechloromonas aromatica
           RCB]
          Length = 113

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 37/97 (38%), Positives = 54/97 (55%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S TIT++DL + +S E G + +++   V   F E+ D   RGE IK++ F  F ++ K  
Sbjct: 8   SMTITKADLAEHLSNEIGFNNREAKEVVEAFFKELSDCLERGEEIKLAGFGVFSMRNKPE 67

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           R GRN +T +E+ I  RRVV F AS  LK  +     
Sbjct: 68  RPGRNPKTGEEIPITARRVVTFHASGCLKSAVESSPN 104


>gi|238917311|ref|YP_002930828.1| DNA-binding protein HU-beta [Eubacterium eligens ATCC 27750]
 gi|238872671|gb|ACR72381.1| DNA-binding protein HU-beta [Eubacterium eligens ATCC 27750]
          Length = 99

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 53/99 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +S+LV +I+++  LS+KD+ + V    + + +    GE I++  F TF V ++ +R G
Sbjct: 1   MNKSELVAAIAEKAELSKKDAEKAVKAFTDTVAEQLKAGEKIQLVGFGTFEVAERAARTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           +N QT + ++I   +   FKA   LK  +    +  K  
Sbjct: 61  KNPQTGKAIQIPASKAPKFKAGKALKDVVNTPAKKSKKK 99


>gi|254447100|ref|ZP_05060567.1| integration host factor, alpha subunit [gamma proteobacterium
          HTCC5015]
 gi|198263239|gb|EDY87517.1| integration host factor, alpha subunit [gamma proteobacterium
          HTCC5015]
          Length = 92

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 50/85 (58%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          + + +  E GL+++++   V   F+EI ++   GE +K+S F  F +++K  R GRN +T
Sbjct: 1  MAECLFDELGLNKREAKELVELFFDEIREALAEGEDVKLSGFGNFTLREKSQRPGRNPKT 60

Query: 70 NQEVKIDPRRVVVFKASSILKKRIM 94
           +E+ I  RRVV F+    LK R+ 
Sbjct: 61 GEEIPISARRVVTFRPGQKLKSRVE 85


>gi|91775279|ref|YP_545035.1| integration host factor, beta subunit [Methylobacillus
          flagellatus KT]
 gi|91775423|ref|YP_545179.1| integration host factor, beta subunit [Methylobacillus
          flagellatus KT]
 gi|91709266|gb|ABE49194.1| integration host factor, beta subunit [Methylobacillus
          flagellatus KT]
 gi|91709410|gb|ABE49338.1| integration host factor, beta subunit [Methylobacillus
          flagellatus KT]
          Length = 95

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 55/95 (57%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ +++  F  L  KD+   V T+ + + ++   GE I+I  F +F +  +  R+
Sbjct: 1  MTKSELIANLAARFPQLVVKDAELSVKTILDSMTENLASGERIEIRGFGSFSLNYRPPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T ++V++  + V  FKA   L++R+  +  
Sbjct: 61 GRNPKTGEKVQVPEKHVPHFKAGKELRERVDGNSN 95


>gi|94499185|ref|ZP_01305723.1| integration host factor alpha subunit [Oceanobacter sp. RED65]
 gi|94428817|gb|EAT13789.1| integration host factor alpha subunit [Oceanobacter sp. RED65]
          Length = 104

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 50/98 (51%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T++D+ + +  E GL+++++   V   F EI       E +K+S F  F +++K  R 
Sbjct: 3   AVTKADMAEKLFDELGLNKREAKEMVDIFFEEIRHCLTEKEQVKLSGFGNFDLREKRQRP 62

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T +E+ I  R VV F+    LK ++        
Sbjct: 63  GRNPKTGEEIPISARCVVTFRPGQKLKVQVEAYNEANP 100


>gi|29654755|ref|NP_820447.1| DNA-binding protein HU [Coxiella burnetii RSA 493]
 gi|154705755|ref|YP_001423922.1| DNA-binding protein HU [Coxiella burnetii Dugway 5J108-111]
 gi|161830880|ref|YP_001597305.1| DNA-binding protein HU [Coxiella burnetii RSA 331]
 gi|165919394|ref|ZP_02219460.1| DNA-binding protein HU [Coxiella burnetii RSA 334]
 gi|212212172|ref|YP_002303108.1| DNA-binding protein HU [Coxiella burnetii CbuG_Q212]
 gi|212219188|ref|YP_002305975.1| DNA-binding protein HU [Coxiella burnetii CbuK_Q154]
 gi|29542023|gb|AAO90961.1| DNA-binding protein HU [Coxiella burnetii RSA 493]
 gi|154355041|gb|ABS76503.1| DNA-binding protein HU [Coxiella burnetii Dugway 5J108-111]
 gi|161762747|gb|ABX78389.1| DNA-binding protein HU [Coxiella burnetii RSA 331]
 gi|165916910|gb|EDR35514.1| DNA-binding protein HU [Coxiella burnetii RSA 334]
 gi|212010582|gb|ACJ17963.1| DNA-binding protein HU [Coxiella burnetii CbuG_Q212]
 gi|212013450|gb|ACJ20830.1| DNA-binding protein HU [Coxiella burnetii CbuK_Q154]
          Length = 94

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 46/92 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I++   +S+  + R +    + +  S   GE + +  F +F   Q+ +R G
Sbjct: 1  MNKNELIEVIAQSADISKNAAGRALDAFVDSVTKSLQEGEDVVLVGFGSFTTSQRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN QT   ++I    V  FKA   LK  +  +
Sbjct: 61 RNPQTGDTMQIPAATVARFKAGKKLKDAVNKE 92


>gi|153875700|ref|ZP_02003384.1| Histone-like bacterial DNA-binding protein [Beggiatoa sp. PS]
 gi|152067837|gb|EDN66617.1| Histone-like bacterial DNA-binding protein [Beggiatoa sp. PS]
          Length = 98

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 55/93 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++ + + +  E GL+++++   V   F E+  +  +GE++K+S F  F ++ K  R 
Sbjct: 2  ALTKAAMAEKLFDEVGLNKREAKDMVDRFFEEVRAALEKGESVKLSGFGNFDLRDKKQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T QE+ I  RRVV F+    L+ R+ ++
Sbjct: 62 GRNPKTGQEIPISARRVVTFRPGQKLRARVEEN 94


>gi|288957040|ref|YP_003447381.1| integration host factor subunit beta [Azospirillum sp. B510]
 gi|288909348|dbj|BAI70837.1| integration host factor subunit beta [Azospirillum sp. B510]
          Length = 93

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 57/93 (61%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ +++    L ++D  + V T+F+EI ++  RG+ +++  F  F +K++ +R 
Sbjct: 1  MTKSELIQRLAERNPHLYQRDIEKIVGTIFDEITEALARGDRVELRGFGAFSIKKRDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V +  + +  FK    L++R+  D
Sbjct: 61 GRNPRTGESVDVGEKCIPFFKTGKQLRERLNTD 93


>gi|254428433|ref|ZP_05042140.1| integration host factor, beta subunit [Alcanivorax sp. DG881]
 gi|196194602|gb|EDX89561.1| integration host factor, beta subunit [Alcanivorax sp. DG881]
          Length = 116

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 1/107 (0%)

Query: 4   TITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            +T+S+L++ I+ ++  LS KD    V TL  ++ DS   G  I+I  F +F +  +  R
Sbjct: 2   ALTKSELIERIADRQAQLSPKDVELAVKTLIEQMADSLAGGGRIEIRGFGSFSLHFRAPR 61

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
           VGRN +T   V++  + V  FK    L++R+ + +     + D+  S
Sbjct: 62  VGRNPKTGASVELHGKYVPHFKPGKELRERVNESLTDSGEDVDNNGS 108


>gi|311104917|ref|YP_003977770.1| integration host factor subunit beta [Achromobacter xylosoxidans
           A8]
 gi|310759606|gb|ADP15055.1| integration host factor, beta subunit [Achromobacter xylosoxidans
           A8]
          Length = 119

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 63/110 (57%), Gaps = 5/110 (4%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+ +++  +  L+ +D+   V T+ + +  +   G+ I+I  F +F + Q+  R+
Sbjct: 1   MTKSELIAALAARYPQLAARDTDYAVKTVLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           GRN ++ ++V +  ++V  FKA   L++R+  D+ G   N +D  S   S
Sbjct: 61  GRNPKSGEQVLVPGKQVPHFKAGKELRERV--DLAGG--NDEDAQSSGSS 106


>gi|210623292|ref|ZP_03293709.1| hypothetical protein CLOHIR_01659 [Clostridium hiranonis DSM
          13275]
 gi|210153693|gb|EEA84699.1| hypothetical protein CLOHIR_01659 [Clostridium hiranonis DSM
          13275]
          Length = 92

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  ++++  L++K++   +      + ++ V GE +++  F TF  + + +R G
Sbjct: 1  MNKAELVSKMAEKSELTKKEAEAALNAFMESVEEALVSGEKVQLVGFGTFETRDRAARQG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIM 94
          RN +  +E + I   +  VFKA   LK ++ 
Sbjct: 61 RNPRNPEEVISIPASKAPVFKAGKGLKDKVN 91


>gi|114762844|ref|ZP_01442276.1| integration host factor, alpha subunit [Pelagibaca bermudensis
          HTCC2601]
 gi|114544454|gb|EAU47461.1| integration host factor, alpha subunit [Roseovarius sp. HTCC2601]
          Length = 92

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 62/90 (68%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DL +++ +E GLSR +S   V ++   + D+ VRGE +KISSF TF V+ K +RVGRN +
Sbjct: 2  DLSEAVFREVGLSRNESAELVESVLQHMSDALVRGEQVKISSFGTFSVRDKAARVGRNPK 61

Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          T +EV I PRRV+ F+ S ++K+++ +  +
Sbjct: 62 TGEEVPIQPRRVLTFRPSHLMKEQVAEGNK 91


>gi|49475535|ref|YP_033576.1| integration host factor subunit alpha [Bartonella henselae str.
           Houston-1]
 gi|81647942|sp|Q6G3K3|IHFA_BARHE RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|49238341|emb|CAF27565.1| Integration host factor alpha-subunit [Bartonella henselae str.
           Houston-1]
          Length = 108

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 54/100 (54%), Positives = 73/100 (73%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           SKT+TR+DL   + ++ GLS  +S   V  + NEIC+S VRGEA+K+SSFATF V++K  
Sbjct: 3   SKTVTRADLASVVCRKVGLSHTESAALVELVLNEICNSLVRGEAVKLSSFATFQVRKKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           RVGRN +T  E  I PRRVV FKA+++LK+RI+D  R R+
Sbjct: 63  RVGRNPKTGVEAPILPRRVVTFKAANVLKQRILDSHRARQ 102


>gi|257066457|ref|YP_003152713.1| histone family protein DNA-binding protein [Anaerococcus prevotii
          DSM 20548]
 gi|256798337|gb|ACV28992.1| histone family protein DNA-binding protein [Anaerococcus prevotii
          DSM 20548]
          Length = 92

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +IS++ GL + ++ + +      + +S V G+ +++  F TF V+ + +R G
Sbjct: 1  MNKSELLINISEKSGLKKSEAEKALNAFLETVTESLVEGDKVQLVGFGTFEVRDRKAREG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95
          RN +  +E ++I   +  VFKA   LK+ +  
Sbjct: 61 RNPRKPEEVIQIPASKAPVFKAGKTLKEAVNK 92


>gi|254447175|ref|ZP_05060642.1| integration host factor, beta subunit [gamma proteobacterium
          HTCC5015]
 gi|198263314|gb|EDY87592.1| integration host factor, beta subunit [gamma proteobacterium
          HTCC5015]
          Length = 102

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 1/95 (1%)

Query: 3  KTITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           T+T+S+L++++S++   L+ KD    V TL  E+ ++   G+ I+I  F +F +  +  
Sbjct: 5  PTVTKSELIENLSRKQPHLAYKDVELAVKTLLEEMSNALSGGQRIEIRGFGSFSLHYRPP 64

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RVGRN +T + V +  + V  FK    L++ + + 
Sbjct: 65 RVGRNPKTGESVALPGKYVPHFKPGKQLRECVNES 99


>gi|77919056|ref|YP_356871.1| BHL, histone-like protein [Pelobacter carbinolicus DSM 2380]
 gi|77545139|gb|ABA88701.1| BHL, histone-like protein [Pelobacter carbinolicus DSM 2380]
          Length = 92

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 54/92 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++++ GL+ K +   V  + + + D+ V G  I+I  F +  VK   + +G
Sbjct: 1  MNKSELIDALAEKKGLTYKRAEEIVNIVLDTMSDTLVEGGRIEIRGFGSLVVKDYKAYIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T +E+++ P+++  FK    L++RI   
Sbjct: 61 RNPKTGEEIEVKPKKLPFFKVGKELRERINKS 92


>gi|17546433|ref|NP_519835.1| DNA-binding protein HU-beta [Ralstonia solanacearum GMI1000]
 gi|207723583|ref|YP_002253982.1| dna-binding protein hu-beta [Ralstonia solanacearum MolK2]
 gi|207743053|ref|YP_002259445.1| dna-binding protein hu-beta [Ralstonia solanacearum IPO1609]
 gi|300691407|ref|YP_003752402.1| DNA-binding protein HU-beta, transcriptional regulator, beta
          subunit [Ralstonia solanacearum PSI07]
 gi|300703975|ref|YP_003745577.1| DNA-binding protein hu-beta, transcriptional regulator subunit
          beta [Ralstonia solanacearum CFBP2957]
 gi|17428731|emb|CAD15416.1| probable dna-binding protein hu-beta [Ralstonia solanacearum
          GMI1000]
 gi|206588785|emb|CAQ35748.1| dna-binding protein hu-beta [Ralstonia solanacearum MolK2]
 gi|206594450|emb|CAQ61377.1| dna-binding protein hu-beta [Ralstonia solanacearum IPO1609]
 gi|299071638|emb|CBJ42962.1| DNA-binding protein HU-beta, transcriptional regulator, beta
          subunit [Ralstonia solanacearum CFBP2957]
 gi|299078467|emb|CBJ51119.1| DNA-binding protein HU-beta, transcriptional regulator, beta
          subunit [Ralstonia solanacearum PSI07]
          Length = 90

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  ++ +  +S+  + R +  L   I D+   G ++ +  F TF V Q+ +R G
Sbjct: 1  MNKTDLIDHVAAQTDMSKAAAGRAIDALIGGIKDALCDGGSVTLVGFGTFLVGQRSARAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI+  +V  FK    LK  + 
Sbjct: 61 RNPRTGATIKIEGAKVAKFKPGKALKDALN 90


>gi|126735022|ref|ZP_01750768.1| integration host factor, beta subunit [Roseobacter sp. CCS2]
 gi|126715577|gb|EBA12442.1| integration host factor, beta subunit [Roseobacter sp. CCS2]
          Length = 93

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 56/93 (60%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ ++ +   L ++D  R V T+F EI ++  RG+ +++  F  F VK++  R+
Sbjct: 1  MIRSELIQKLADENPHLYQRDVERIVNTIFEEIIEAMARGDRVELRGFGAFSVKKRDQRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V++D + V  FK   +L+ R+   
Sbjct: 61 GRNPRTGEAVEVDEKHVPFFKTGKLLRDRLNGS 93


>gi|87199383|ref|YP_496640.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans
          DSM 12444]
 gi|87135064|gb|ABD25806.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans
          DSM 12444]
          Length = 90

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ S++   GLS+ D+T+ V  +F  I  +  +G+ +++  F TF V ++ +  G
Sbjct: 1  MNKNDLIGSVADASGLSKGDATKAVEAVFESISGALAKGDEVRLVGFGTFSVAKRKASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I       FKA   LK  + 
Sbjct: 61 RNPRTGEPMSIKASAQPKFKAGKGLKDAVN 90


>gi|293604178|ref|ZP_06686586.1| integration host factor beta subunit [Achromobacter piechaudii ATCC
           43553]
 gi|292817403|gb|EFF76476.1| integration host factor beta subunit [Achromobacter piechaudii ATCC
           43553]
          Length = 119

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 65/110 (59%), Gaps = 4/110 (3%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+ +++  +  L+ +D+   V T+ + +  +   G+ I+I  F +F + Q+  R+
Sbjct: 1   MTKSELIAALAARYPQLAARDTDYAVKTVLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           GRN ++ ++V +  ++V  FKA   L++R+ D + G   ++D  +S SG 
Sbjct: 61  GRNPKSGEQVLVPGKQVPHFKAGKELRERV-DLVGGN--DEDAQSSGSGE 107


>gi|163856201|ref|YP_001630499.1| integration host factor beta-subunit [Bordetella petrii DSM 12804]
 gi|226709770|sp|A9IJJ1|IHFB_BORPD RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|163259929|emb|CAP42230.1| integration host factor beta-subunit [Bordetella petrii]
          Length = 119

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 61/108 (56%), Gaps = 2/108 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+ +++  +  L+ +D+   V T+ + +  +   G+ I+I  F +F + Q+  RV
Sbjct: 1   MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111
           GRN ++ ++V +  ++V  FKA   L++R+ D   G    + D  +P 
Sbjct: 61  GRNPKSGEQVLVPGKQVPHFKAGKELRERV-DLAGGLADTQPDGDAPD 107


>gi|109898780|ref|YP_662035.1| integration host factor, beta subunit [Pseudoalteromonas
          atlantica T6c]
 gi|332306875|ref|YP_004434726.1| integration host factor, beta subunit [Glaciecola agarilytica
          4H-3-7+YE-5]
 gi|123171106|sp|Q15T07|IHFB_PSEA6 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|109701061|gb|ABG40981.1| integration host factor, beta subunit [Pseudoalteromonas
          atlantica T6c]
 gi|332174204|gb|AEE23458.1| integration host factor, beta subunit [Glaciecola agarilytica
          4H-3-7+YE-5]
          Length = 96

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 54/94 (57%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ +   +  +D    +  +  ++  +  +GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLADKARHVPSRDVELAIKEMLEQMAQTLQKGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T + V++D + V  FK    L++R+ +D+
Sbjct: 61 GRNPKTGETVELDGKHVPHFKPGKELRERVNEDL 94


>gi|315635141|ref|ZP_07890419.1| DNA-binding protein HU [Aggregatibacter segnis ATCC 33393]
 gi|315476103|gb|EFU66857.1| DNA-binding protein HU [Aggregatibacter segnis ATCC 33393]
          Length = 90

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+    L++K +   +    + I  S  +GEA+++  F TF V  + +R G
Sbjct: 1  MNKTDLIDAIASAAELNKKQAKAALEATLDAITGSLKKGEAVQLIGFGTFKVNARKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E+KI   +V  F +   LK  + 
Sbjct: 61 RNPQTGAEIKIAASKVPAFVSGKALKDAVK 90


>gi|253996481|ref|YP_003048545.1| histone family protein DNA-binding protein [Methylotenera mobilis
          JLW8]
 gi|253983160|gb|ACT48018.1| histone family protein DNA-binding protein [Methylotenera mobilis
          JLW8]
          Length = 90

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV  ++ E G+++ D+ R +  + N + ++   G+ + +  F TF V +K +R G
Sbjct: 1  MNKSELVAKVAAEAGVTQADTNRVLDAIINTVGEALKAGDNVALVGFGTFQVTKKAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T   ++I  R   VFKA   LK ++ 
Sbjct: 61 RNPSTGATIQIAARNAPVFKAGKTLKDKVN 90


>gi|33592108|ref|NP_879752.1| integration host factor beta-subunit [Bordetella pertussis Tohama
           I]
 gi|33571752|emb|CAE41253.1| integration host factor beta-subunit [Bordetella pertussis Tohama
           I]
 gi|332381524|gb|AEE66371.1| integration host factor beta-subunit [Bordetella pertussis CS]
          Length = 119

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 58/103 (56%), Gaps = 3/103 (2%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+ +++  +  L+ +D+   V T+ + +  +   G+ I+I  F +F + Q+  R+
Sbjct: 1   MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN ++ ++V +  ++V  FKA   L++ +  D+ G     D 
Sbjct: 61  GRNPKSGEQVLVPGKQVPHFKAGKELREWV--DLVGNDQGDDS 101


>gi|254460326|ref|ZP_05073742.1| integration host factor, beta subunit [Rhodobacterales bacterium
          HTCC2083]
 gi|206676915|gb|EDZ41402.1| integration host factor, beta subunit [Rhodobacteraceae bacterium
          HTCC2083]
          Length = 93

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ ++ +   L ++D  R V T+F EI ++  RG+ +++  F  F VK++ +RV
Sbjct: 1  MIRSELIQKLADENPHLYQRDVERIVNTVFEEITETMARGDRVELRGFGAFSVKKRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V ++ + V  FK   +L+ R+  
Sbjct: 61 GRNPRTGESVPVEEKHVPFFKTGKLLRDRLNG 92


>gi|88705967|ref|ZP_01103675.1| Integration host factor beta-subunit [Congregibacter litoralis
          KT71]
 gi|88699681|gb|EAQ96792.1| Integration host factor beta-subunit [Congregibacter litoralis
          KT71]
          Length = 98

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+++I+ K+  LS KD    V T+  ++ +S   G  I+I  F +F +  +  R 
Sbjct: 1  MTKSELIEAIALKQTQLSTKDVELAVKTVIEQMSNSLSSGGRIEIRGFGSFSLHYREPRR 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T   V++  + V  FK    L+ R+   ++ 
Sbjct: 61 GRNPKTGDAVELTGKYVPHFKPGKELRDRVNLGLQA 96


>gi|220926815|ref|YP_002502117.1| integration host factor subunit alpha [Methylobacterium nodulans
          ORS 2060]
 gi|219951422|gb|ACL61814.1| integration host factor, alpha subunit [Methylobacterium nodulans
          ORS 2060]
          Length = 105

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 47/95 (49%), Positives = 65/95 (68%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           KT+TR+DL +++ +  GLSR +S   V T+ +EIC     GE +K+SSF +F V+ KG 
Sbjct: 3  GKTVTRADLTEAVYQRVGLSRTESAALVETVLSEICTCLASGETVKLSSFGSFVVRDKGK 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RVGRN +T  EV I+PRRV+VFK S++LK RI   
Sbjct: 63 RVGRNPKTGVEVAIEPRRVMVFKPSNVLKARINGS 97


>gi|238021485|ref|ZP_04601911.1| hypothetical protein GCWU000324_01385 [Kingella oralis ATCC
          51147]
 gi|237868465|gb|EEP69471.1| hypothetical protein GCWU000324_01385 [Kingella oralis ATCC
          51147]
          Length = 101

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 50/87 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I+++ GL++ D+ + V      + D+   G++I +  F TF V ++ +R G
Sbjct: 1  MNKSELIEAIAQQAGLTKTDAGKAVDAFTAVVKDALKSGDSIALVGFGTFKVAERAARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
           N +T + +KI   RV  F A   LK 
Sbjct: 61 LNPRTKEAIKIPAARVPKFTAGKTLKD 87


>gi|187928947|ref|YP_001899434.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12J]
 gi|187725837|gb|ACD27002.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12J]
          Length = 90

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  ++ +  +S+  + R +  L + I D+   G ++ +  F TF V ++ SR G
Sbjct: 1  MNKTDLIDHVATQTDMSKAAAGRAIDALIDGIKDALCEGGSVTLVGFGTFLVGKRSSRNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   + I+  +V  FK    LK  + 
Sbjct: 61 RNPRTGAAITIEGGKVAKFKPGKALKDALN 90


>gi|94264784|ref|ZP_01288562.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|93454773|gb|EAT05028.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
          Length = 91

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV  ++ E  +++ D+ R V  +   + DS   GE I I  F TF V+++ ++ G
Sbjct: 1  MNKGELVDKVAAEGKITKADADRLVKVVLGSMTDSLTNGEKITIPGFGTFEVRERAAKQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT   V+I  R+ V FK    LK  +  
Sbjct: 61 RNPQTGATVEIPARKAVAFKPGKTLKDVLNK 91


>gi|296116566|ref|ZP_06835176.1| integration host factor, alpha subunit [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976778|gb|EFG83546.1| integration host factor, alpha subunit [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 105

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 2/106 (1%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           MS T+TR+ L + I  + GLSR +S   +  +  ++  +   G+ +KIS F TF V++KG
Sbjct: 1   MS-TVTRATLAEQIYSQVGLSRHESADILEHVLEKVAHALEAGDTVKISGFGTFSVRKKG 59

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
            R GRN +T  EV I PR V+VF+ S +L+  +  D  G    +DD
Sbjct: 60  RRTGRNPKTGVEVPILPRSVLVFRPSQLLRAHVNGDT-GHMNAEDD 104


>gi|159899915|ref|YP_001546162.1| histone family protein DNA-binding protein [Herpetosiphon
          aurantiacus ATCC 23779]
 gi|159892954|gb|ABX06034.1| histone family protein DNA-binding protein [Herpetosiphon
          aurantiacus ATCC 23779]
          Length = 92

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 54/91 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+K+I+++ GLS+  + + V  L   I ++   G+ + ++ F TF V+++ +R G
Sbjct: 1  MHQSDLIKAIAEKSGLSQAQAGKAVNALLESITEALAAGDRVVLTGFGTFEVRERQARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T + ++I   R   F A S LKK + +
Sbjct: 61 FNPKTREPLEIPATRAPAFSAGSNLKKAVTE 91


>gi|87122168|ref|ZP_01078051.1| integration host factor beta-subunit [Marinomonas sp. MED121]
 gi|86162488|gb|EAQ63770.1| integration host factor beta-subunit [Marinomonas sp. MED121]
          Length = 101

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++  I ++  L  +D  + +  +   + +    GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIELLIDQQSHLPVQDVEQAIKAMLEHMSEVLADGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T + V +  + V  FK    L++ + 
Sbjct: 61 GRNPKTGESVDLVAKYVPHFKPGKELRELVN 91


>gi|330953536|gb|EGH53796.1| integration host factor subunit beta [Pseudomonas syringae Cit 7]
          Length = 98

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I    GL S KD    + T+  ++      G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T Q V +D + V  FK    L+ R+ +D  
Sbjct: 61 GRNPKTGQSVSLDGKFVPHFKPGKELRDRVNEDEE 95


>gi|238026537|ref|YP_002910768.1| integration host factor subunit beta [Burkholderia glumae BGR1]
 gi|237875731|gb|ACR28064.1| Integration host factor, beta subunit [Burkholderia glumae BGR1]
          Length = 108

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 2/106 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + D+  +G  I+I  F +F + ++ +RV
Sbjct: 1   MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
           GRN ++ ++V++  + V  FK    L++R+ D   G     D    
Sbjct: 61  GRNPKSGEKVQVPEKYVPHFKPGKELRERV-DGRAGEPLKHDSGGD 105


>gi|167755951|ref|ZP_02428078.1| hypothetical protein CLORAM_01471 [Clostridium ramosum DSM 1402]
 gi|237733268|ref|ZP_04563749.1| predicted protein [Mollicutes bacterium D7]
 gi|167703943|gb|EDS18522.1| hypothetical protein CLORAM_01471 [Clostridium ramosum DSM 1402]
 gi|229383649|gb|EEO33740.1| predicted protein [Coprobacillus sp. D7]
          Length = 91

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV++I+    +++ D  + VT   + + ++ V+G+ + +  F  F V+++G R G
Sbjct: 1  MNKTELVEAIASSTEMTKTDVDKVVTAFVDVVTEALVKGDKVSLKGFGNFEVRERGERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + + I   +   FK+SS LK  +  
Sbjct: 61 RNPRTGETMTIAASKAPAFKSSSALKNAVNK 91


>gi|254467817|ref|ZP_05081223.1| integration host factor, alpha subunit [beta proteobacterium KB13]
 gi|207086627|gb|EDZ63910.1| integration host factor, alpha subunit [beta proteobacterium KB13]
          Length = 98

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 55/97 (56%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L   + ++ GL++ +S   V   F +I  +   GE++K+S F  F ++ K  R 
Sbjct: 2   TLTKANLSNLLFEQVGLNKTESKEMVEAFFEQIKIALENGESVKLSGFGNFELRTKSERP 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T +EV I  RRVV F +S  LK  +     G+
Sbjct: 62  GRNPKTGEEVPIKARRVVTFHSSQKLKSSVDGGSSGK 98


>gi|323698417|ref|ZP_08110329.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          ND132]
 gi|323458349|gb|EGB14214.1| histone family protein DNA-binding protein [Desulfovibrio
          desulfuricans ND132]
          Length = 90

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  I+++ G S+  +   +  + + I D    G  + ++ F TF V ++ +R G
Sbjct: 1  MTKAELVAKIAEKIGTSKAQAEASMNAILDTIQDELAAGNKLTLTGFGTFSVSERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   + I   +V  FK   +LK  + 
Sbjct: 61 RNPRTGTALNIPACKVAQFKPGKVLKDAVK 90


>gi|110834605|ref|YP_693464.1| integration host factor subunit beta [Alcanivorax borkumensis SK2]
 gi|110647716|emb|CAL17192.1| integration host factor beta-subunit [Alcanivorax borkumensis SK2]
          Length = 117

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 1/104 (0%)

Query: 4   TITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            +T+S+L++ I+ ++  LS KD    V TL  ++ DS   G  I+I  F +F +  +  R
Sbjct: 2   ALTKSELIERIADRQAQLSPKDVELAVKTLIEQMADSLAGGGRIEIRGFGSFSLHFRAPR 61

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           VGRN +T   V++  + V  FK    L++R+ + +        D
Sbjct: 62  VGRNPKTGASVELHGKYVPHFKPGKELRERVNESLSADSGEDVD 105


>gi|144899229|emb|CAM76093.1| Histone-like bacterial DNA-binding protein [Magnetospirillum
          gryphiswaldense MSR-1]
          Length = 95

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 58/91 (63%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  ++++   L ++D  R VTT+F+EI ++  RG+ +++  F  F VK + +R 
Sbjct: 1  MTKSELIARLAEKNPHLYQRDVERIVTTIFDEIAEALARGDRVELRGFGAFSVKSRDARQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T ++V +D + V  FK    L++R+ 
Sbjct: 61 GRNPRTGEQVAVDGKVVPFFKTGKQLRERLN 91


>gi|83719600|ref|YP_440564.1| DNA-binding protein HU-alpha [Burkholderia thailandensis E264]
 gi|83653425|gb|ABC37488.1| DNA-binding protein HU-alpha [Burkholderia thailandensis E264]
          Length = 126

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 47/91 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + + +L+ +++ + G S+  +   + TL   I  +  +G+++++  F +F   ++ +R G
Sbjct: 35  MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDSVQLIGFGSFGSGKRAARTG 94

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN +T + +KI   + V F A    K  +  
Sbjct: 95  RNPKTGETIKIPAAKTVKFTAGKAFKDAVNK 125


>gi|254419022|ref|ZP_05032746.1| integration host factor, alpha subunit [Brevundimonas sp. BAL3]
 gi|196185199|gb|EDX80175.1| integration host factor, alpha subunit [Brevundimonas sp. BAL3]
          Length = 103

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 66/99 (66%), Gaps = 2/99 (2%)

Query: 1   MS--KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
           MS  +T+TR+DL +++ +E GLSR++ +  V      I +S  +G+ +K+S F  F V++
Sbjct: 2   MSGLQTVTRADLCEAVHEEVGLSRQECSALVERTLELIVESLEQGDTVKLSGFGVFQVRE 61

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           K +R+GRN +T +   I+PRRV+ F+AS I+K R+ D +
Sbjct: 62  KRARMGRNPKTGEPAAINPRRVISFRASQIMKSRVHDAV 100


>gi|319408456|emb|CBI82111.1| integration host factor alpha subunit [Bartonella schoenbuchensis
           R1]
          Length = 103

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/100 (49%), Positives = 71/100 (71%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL  ++ ++ GLS  +S+  V  + +EIC+S V+ E +K+SSFATF V+ K  
Sbjct: 3   GKTVTRADLASAVCRKVGLSYTESSALVELILDEICNSLVKDEVVKLSSFATFQVRSKSE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           R+GRN +T  E  I PRRVV FKA++ILKKRI+D  R ++
Sbjct: 63  RIGRNPKTGIEAPIPPRRVVTFKAANILKKRILDAHRAKQ 102


>gi|118579611|ref|YP_900861.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
 gi|118502321|gb|ABK98803.1| bacterial nucleoid protein Hbs [Pelobacter propionicus DSM 2379]
          Length = 92

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L+ ++++E GL + D+ + ++   + + ++  +G+ + +  F TF   ++ +R G
Sbjct: 1  MTKAELISAVAEESGLKKVDAEKALSAFISTVTEALKQGDKLSLVGFGTFCTSKRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT +++ I    +  F+    LK  + 
Sbjct: 61 QNPQTGKKINIPAATIPKFRPGKTLKDAVN 90


>gi|313673034|ref|YP_004051145.1| histone family protein DNA-binding protein [Calditerrivibrio
          nitroreducens DSM 19672]
 gi|312939790|gb|ADR18982.1| histone family protein DNA-binding protein [Calditerrivibrio
          nitroreducens DSM 19672]
          Length = 90

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL++ I+ + GL + ++ + +      + ++   G+ + +  F TF V ++ +R G
Sbjct: 1  MNKKDLIEKIATKAGLKKVEAEKALEAFEEAVVEALKSGDKVTLVGFGTFSVYERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI  ++   F    + K  + 
Sbjct: 61 RNPQTGKEIKIPAKKAPKFTPGKLFKDSVK 90


>gi|312959706|ref|ZP_07774223.1| Integration host factor subunit beta [Pseudomonas fluorescens
          WH6]
 gi|311286423|gb|EFQ64987.1| Integration host factor subunit beta [Pseudomonas fluorescens
          WH6]
          Length = 97

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I    GL S KD    + T+  ++      G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T Q V +D + V  FK    L+ R+ +D
Sbjct: 61 GRNPKTGQSVSLDGKFVPHFKPGKELRDRVNED 93


>gi|197105121|ref|YP_002130498.1| integration host factor alpha-subunit [Phenylobacterium zucineum
          HLK1]
 gi|226709738|sp|B4RB18|IHFA_PHEZH RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|196478541|gb|ACG78069.1| integration host factor alpha-subunit [Phenylobacterium zucineum
          HLK1]
          Length = 100

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/94 (37%), Positives = 61/94 (64%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+DL +++ ++ GL+R+D    V  +   +C +  RGE +K+S F  F V+ K +R+
Sbjct: 5  TVTRADLCEAVHEQVGLTRQDCAELVERVLELMCQALERGEQVKLSGFGVFQVRSKRARM 64

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T +   I+PRRV+ F+AS ++K R+   +
Sbjct: 65 GRNPKTGEPAAIEPRRVIGFRASQVMKARVDQAL 98


>gi|187777484|ref|ZP_02993957.1| hypothetical protein CLOSPO_01052 [Clostridium sporogenes ATCC
           15579]
 gi|187774412|gb|EDU38214.1| hypothetical protein CLOSPO_01052 [Clostridium sporogenes ATCC
           15579]
          Length = 109

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 53/91 (58%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +S+L+ S++++  L++KD+   + +    + ++   GE +++  F TF  +++  RVG
Sbjct: 18  VNKSELITSMAEKSKLTKKDAEAALKSFIESVEEALEGGEKVQLVGFGTFETRERAERVG 77

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN +T +E+ I      VFKA   LK+++  
Sbjct: 78  RNPRTKEEITIPASIAPVFKAGKELKEKVNK 108


>gi|332186781|ref|ZP_08388523.1| bacterial DNA-binding family protein [Sphingomonas sp. S17]
 gi|332013114|gb|EGI55177.1| bacterial DNA-binding family protein [Sphingomonas sp. S17]
          Length = 90

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++   GL R D+ + V  +F  I  +  +G+ +++  F TF V ++ +  G
Sbjct: 1  MNKQELIATVADSSGLVRGDAVKAVDAVFEAITAALKKGDEVRLVGFGTFSVSKRKASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I       FK   +LK  + 
Sbjct: 61 RNPRTGEPMTIKASSQPKFKPGKLLKDSVN 90


>gi|329890646|ref|ZP_08268989.1| integration host factor, beta subunit [Brevundimonas diminuta
          ATCC 11568]
 gi|328845947|gb|EGF95511.1| integration host factor, beta subunit [Brevundimonas diminuta
          ATCC 11568]
          Length = 96

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 49/93 (52%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ ++ +   L+  +  R V  +   + ++   G  +++  F  F V+ + +R 
Sbjct: 1  MIKSELIEKLAAENLHLTHAEVERVVNVILGRMTETLSDGGRVELRGFGAFSVRSRPART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V++  + V  FK+   L++R+   
Sbjct: 61 GRNPRTGETVEVPAKAVPFFKSGKELRERLNAS 93


>gi|167569600|ref|ZP_02362474.1| Putative DNA-binding protein HU-alpha, HupA [Burkholderia
          oklahomensis C6786]
          Length = 90

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+++  LS+  + R +  L   + ++  RG A+ +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIARQADLSKSSAARALDALLGGVTNTLQRGGAVTLVGFGTFEVGKRAARGG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          R+ +T   ++I    V  F+A   LK  + 
Sbjct: 61 RDPRTGAAIEIRAANVPKFRAGKALKDALN 90


>gi|90581254|ref|ZP_01237052.1| putative integration host factor, beta subunit [Vibrio angustum
          S14]
 gi|90437625|gb|EAS62818.1| putative integration host factor, beta subunit [Vibrio angustum
          S14]
          Length = 90

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + S++  LS K     +  +   + ++   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLCSQQTHLSAKQVEDAIKDILENMANTLAEGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  +V++D + V  FK    L+ R+
Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRV 90


>gi|251793493|ref|YP_003008222.1| DNA-binding protein HU-beta [Aggregatibacter aphrophilus NJ8700]
 gi|247534889|gb|ACS98135.1| DNA-binding protein HU-beta [Aggregatibacter aphrophilus NJ8700]
          Length = 90

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+    L++K +   +      I  S  +GEA+++  F TF V  + +R G
Sbjct: 1  MNKTDLIDAIASSAELNKKQAKAALEATLEAITGSLKKGEAVQLIGFGTFKVNARKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E+KI   +V  F +   LK  + 
Sbjct: 61 RNPQTGAEIKIAASKVPAFVSGKALKDAVK 90


>gi|226946415|ref|YP_002801488.1| histone-like DNA-binding protein [Azotobacter vinelandii DJ]
 gi|226721342|gb|ACO80513.1| histone-like bacterial DNA-binding protein, hupB family
          [Azotobacter vinelandii DJ]
          Length = 90

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ S+S    L +  +T+ V  L   I      G  + +  F TF VK++ +R G
Sbjct: 1  MNKSELIASVSTHADLDKNTATKVVNALLETITAELKAGHEVGLIGFGTFSVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +   FKA   LK+ + 
Sbjct: 61 RNPQTGKEIEIAAAKTPGFKAGKGLKEAVN 90


>gi|317402986|gb|EFV83525.1| integration host factor beta-subunit [Achromobacter xylosoxidans
           C54]
          Length = 119

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 60/106 (56%), Gaps = 2/106 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+ +++  +  L+ +D+   V T+ + +  +   G+ I+I  F +F + Q+  R+
Sbjct: 1   MTKSELIAALAARYPQLAARDTDYAVKTVLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
           GRN ++ ++V +  ++V  FKA   L++R+ D + G   +     S
Sbjct: 61  GRNPKSGEQVLVPGKQVPHFKAGKELRERV-DLVGGNDEDAQSSGS 105


>gi|163756383|ref|ZP_02163497.1| fumarate hydratase [Kordia algicida OT-1]
 gi|161323735|gb|EDP95070.1| fumarate hydratase [Kordia algicida OT-1]
          Length = 101

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 54/93 (58%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S  + +++L+ +++ + G+S+  + + + +    +  +  +G+ + +  F ++ V ++ +
Sbjct: 9   STIMNKTELIDAMAADAGISKAAAKKSLESFLGNVEGALKKGDRVSLVGFGSWSVSERAA 68

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           R GRN QT + ++I  ++VV FKA S L K + 
Sbjct: 69  REGRNPQTGKTIQIAAKKVVKFKAGSDLGKAVN 101


>gi|39997696|ref|NP_953647.1| DNA-binding protein HU [Geobacter sulfurreducens PCA]
 gi|39984588|gb|AAR35974.1| DNA-binding protein HU [Geobacter sulfurreducens PCA]
 gi|298506629|gb|ADI85352.1| integration host factor, beta subunit [Geobacter sulfurreducens
          KN400]
          Length = 96

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV+ ++++   L+RKDS   V  +F+ I D+   GE ++I  F +F V+++G+R 
Sbjct: 1  MTKSELVEMLAEKNSWLTRKDSEMVVNIVFDSIADALKSGEKVEIRGFGSFTVRERGARE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           RN ++   VKI  ++   FK    L++R+  +
Sbjct: 61 ARNPKSGAIVKIPAKKTPFFKTGKELRERVNHE 93


>gi|28868957|ref|NP_791576.1| integration host factor subunit beta [Pseudomonas syringae pv.
          tomato str. DC3000]
 gi|66046870|ref|YP_236711.1| integration host factor subunit beta [Pseudomonas syringae pv.
          syringae B728a]
 gi|213968715|ref|ZP_03396857.1| integration host factor subunit beta [Pseudomonas syringae pv.
          tomato T1]
 gi|237799024|ref|ZP_04587485.1| integration host factor subunit beta [Pseudomonas syringae pv.
          oryzae str. 1_6]
 gi|257485841|ref|ZP_05639882.1| integration host factor subunit beta [Pseudomonas syringae pv.
          tabaci ATCC 11528]
 gi|289623737|ref|ZP_06456691.1| integration host factor subunit beta [Pseudomonas syringae pv.
          aesculi str. NCPPB3681]
 gi|289648179|ref|ZP_06479522.1| integration host factor subunit beta [Pseudomonas syringae pv.
          aesculi str. 2250]
 gi|289677166|ref|ZP_06498056.1| integration host factor subunit beta [Pseudomonas syringae pv.
          syringae FF5]
 gi|298488022|ref|ZP_07006059.1| Integration host factor beta subunit [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|301381330|ref|ZP_07229748.1| integration host factor subunit beta [Pseudomonas syringae pv.
          tomato Max13]
 gi|302061500|ref|ZP_07253041.1| integration host factor subunit beta [Pseudomonas syringae pv.
          tomato K40]
 gi|302130033|ref|ZP_07256023.1| integration host factor subunit beta [Pseudomonas syringae pv.
          tomato NCPPB 1108]
 gi|302187671|ref|ZP_07264344.1| integration host factor subunit beta [Pseudomonas syringae pv.
          syringae 642]
 gi|38372325|sp|Q885T0|IHFB_PSESM RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|81308021|sp|Q4ZQ99|IHFB_PSEU2 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|28852197|gb|AAO55271.1| integration host factor, beta subunit [Pseudomonas syringae pv.
          tomato str. DC3000]
 gi|63257577|gb|AAY38673.1| Integration host factor, beta subunit [Pseudomonas syringae pv.
          syringae B728a]
 gi|213926648|gb|EEB60201.1| integration host factor subunit beta [Pseudomonas syringae pv.
          tomato T1]
 gi|298157301|gb|EFH98384.1| Integration host factor beta subunit [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|320323346|gb|EFW79434.1| integration host factor subunit beta [Pseudomonas syringae pv.
          glycinea str. B076]
 gi|320327543|gb|EFW83555.1| integration host factor subunit beta [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330866104|gb|EGH00813.1| integration host factor subunit beta [Pseudomonas syringae pv.
          aesculi str. 0893_23]
 gi|330876622|gb|EGH10771.1| integration host factor subunit beta [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330877035|gb|EGH11184.1| integration host factor subunit beta [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
 gi|330889340|gb|EGH22001.1| integration host factor subunit beta [Pseudomonas syringae pv.
          mori str. 301020]
 gi|330897210|gb|EGH28629.1| integration host factor subunit beta [Pseudomonas syringae pv.
          japonica str. M301072PT]
 gi|330939638|gb|EGH42944.1| integration host factor subunit beta [Pseudomonas syringae pv.
          pisi str. 1704B]
 gi|330964803|gb|EGH65063.1| integration host factor subunit beta [Pseudomonas syringae pv.
          actinidiae str. M302091]
 gi|330972339|gb|EGH72405.1| integration host factor subunit beta [Pseudomonas syringae pv.
          aceris str. M302273PT]
 gi|330980288|gb|EGH78423.1| integration host factor subunit beta [Pseudomonas syringae pv.
          aptata str. DSM 50252]
 gi|330986660|gb|EGH84763.1| integration host factor subunit beta [Pseudomonas syringae pv.
          lachrymans str. M301315]
 gi|331012930|gb|EGH92986.1| integration host factor subunit beta [Pseudomonas syringae pv.
          tabaci ATCC 11528]
 gi|331016847|gb|EGH96903.1| integration host factor subunit beta [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
 gi|331021878|gb|EGI01935.1| integration host factor subunit beta [Pseudomonas syringae pv.
          oryzae str. 1_6]
          Length = 98

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I    GL S KD    + T+  ++      G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T Q V +D + V  FK    L+ R+ +D  
Sbjct: 61 GRNPKTGQSVSLDGKFVPHFKPGKELRDRVNEDEE 95


>gi|332998852|gb|EGK18447.1| DNA-binding protein HU-alpha [Shigella flexneri K-272]
 gi|333014312|gb|EGK33666.1| DNA-binding protein HU-alpha [Shigella flexneri K-227]
          Length = 90

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|295694764|ref|YP_003588002.1| histone family protein DNA-binding protein [Bacillus tusciae DSM
          2912]
 gi|295410366|gb|ADG04858.1| histone family protein DNA-binding protein [Bacillus tusciae DSM
          2912]
          Length = 87

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 50/83 (60%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          +L+  +++  GL +K++   V ++F+ I ++   GE +++  F TF  +++ +R+GRN Q
Sbjct: 2  ELIAKVAERSGLKKKEAEAAVNSVFDVIGEALAGGEKVQLVGFGTFEPRRRAARIGRNPQ 61

Query: 69 TNQEVKIDPRRVVVFKASSILKK 91
          T +E+ I    V  FK  + LK+
Sbjct: 62 TGEEISIPESVVPAFKPGNKLKE 84


>gi|225076633|ref|ZP_03719832.1| hypothetical protein NEIFLAOT_01683 [Neisseria flavescens
          NRL30031/H210]
 gi|241758592|ref|ZP_04756707.1| integration host factor, alpha subunit [Neisseria flavescens
          SK114]
 gi|261379897|ref|ZP_05984470.1| integration host factor, alpha subunit [Neisseria subflava
          NJ9703]
 gi|319637854|ref|ZP_07992620.1| integration host factor subunit alpha [Neisseria mucosa C102]
 gi|224952039|gb|EEG33248.1| hypothetical protein NEIFLAOT_01683 [Neisseria flavescens
          NRL30031/H210]
 gi|241321244|gb|EER57416.1| integration host factor, alpha subunit [Neisseria flavescens
          SK114]
 gi|284797599|gb|EFC52946.1| integration host factor, alpha subunit [Neisseria subflava
          NJ9703]
 gi|317401009|gb|EFV81664.1| integration host factor subunit alpha [Neisseria mucosa C102]
          Length = 100

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 4  TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T+T+++L   +  +   +++ D+   V   F EI  +  RGE IKIS F  F ++ K  R
Sbjct: 2  TLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLARGEEIKISGFGNFQLRDKPQR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN +T +EV I  RRVV F AS  LK  + 
Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLKGMVE 93


>gi|218885604|ref|YP_002434925.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris str. 'Miyazaki F']
 gi|218756558|gb|ACL07457.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris str. 'Miyazaki F']
          Length = 90

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  I+ +  L++  + R +    + + D+      + ++ F TF V+ + +R G
Sbjct: 1  MTKADLVDKIAAKANLTKASAERSLNAFLDAVKDALAAEGKLTLTGFGTFAVEDRQARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  E+KI   +VV F+    LK  I 
Sbjct: 61 RNPRTGAEIKIPASKVVKFRPGKTLKDSIK 90


>gi|114766575|ref|ZP_01445531.1| integration host factor beta subunit [Pelagibaca bermudensis
          HTCC2601]
 gi|114541191|gb|EAU44243.1| integration host factor beta subunit [Roseovarius sp. HTCC2601]
          Length = 93

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 58/92 (63%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I++E   L ++D  R V T+F EI ++  RG+ +++  F  F VK++ +R+
Sbjct: 1  MIRSELIQKIAEENPHLYQRDVERIVNTIFEEITNAMARGDRVELRGFGAFSVKKRDARL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V+++ + V  FK   +L+ R+  
Sbjct: 61 GRNPRTGEAVEVEEKHVPFFKTGKLLRDRLNG 92


>gi|320108132|ref|YP_004183722.1| histone family protein DNA-binding protein [Terriglobus saanensis
          SP1PR4]
 gi|319926653|gb|ADV83728.1| histone family protein DNA-binding protein [Terriglobus saanensis
          SP1PR4]
          Length = 107

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  ++    L+R+D    V TLF  +  +    + ++I  F +F  +Q+ SR+G
Sbjct: 1  MTKADLVDKVTDLGDLTRRDGEIIVETLFEGVVSALKADDKVEIRGFGSFRTRQRNSRIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + V +  +RV  FK S  L+  + 
Sbjct: 61 RNPKTGERVDVPAKRVPFFKPSKELRDLVN 90


>gi|296157830|ref|ZP_06840664.1| histone family protein DNA-binding protein [Burkholderia sp.
          Ch1-1]
 gi|295892076|gb|EFG71860.1| histone family protein DNA-binding protein [Burkholderia sp.
          Ch1-1]
          Length = 90

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+++  +S+  + R +  +   +  +  +G ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIDHIAQQADISKAAAGRALDAVIGGVKGTLKQGGSVTLVGFGTFAVGKRTARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   +V  F+    LK  + 
Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALKDALN 90


>gi|58581804|ref|YP_200820.1| integration host factor subunit beta [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58426398|gb|AAW75435.1| integration host factor beta subunit [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 119

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 1/103 (0%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L++ +++    L   D    V +L   +  +   G+ I+I  F +F +  +  R+
Sbjct: 17  MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 76

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN +T + V +  + V  FK    L++R+   +     +  D
Sbjct: 77  GRNPKTGESVALPGKHVPHFKPGKELRERVSSVVPVDMSDTTD 119


>gi|317968906|ref|ZP_07970296.1| DNA-binding protein HU [Synechococcus sp. CB0205]
          Length = 91

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 49/91 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ D  + V    + I DS V G+ + I  F +F  +++ +R G
Sbjct: 1  MNKADLVNLVAARTELTKTDVAQVVDAAIDTIIDSVVEGKKVSILGFGSFEPRERSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T Q++KI  +RV  F A  + K R+  
Sbjct: 61 LNPKTGQKIKIPAKRVPAFTAGKLFKDRVQG 91


>gi|222147331|ref|YP_002548288.1| integration host factor subunit beta [Agrobacterium vitis S4]
 gi|254803526|sp|B9JZH2|IHFB_AGRVS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|221734321|gb|ACM35284.1| integration host factor beta subunit [Agrobacterium vitis S4]
          Length = 103

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ ++     L  +D    V  + +EI D+   G  +++  F  F VK + SR 
Sbjct: 1  MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALASGNRVELRGFGAFSVKNRPSRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T   V ++ + V  FK    L++R+   M
Sbjct: 61 GRNPRTGDTVFVEEKWVPFFKTGKELRERLNPGM 94


>gi|167562417|ref|ZP_02355333.1| Putative DNA-binding protein HU-alpha, HupA [Burkholderia
          oklahomensis EO147]
          Length = 90

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+++  LS+  + R +  L   + ++  +G A+ +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIARQADLSKSSAARALDALLGGVTNTLQQGGAVTLVGFGTFEVGKRAARGG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          R+ +T   ++I    V  F+A   LK  + 
Sbjct: 61 RDPRTGAAIEIRAANVPKFRAGKALKDALN 90


>gi|325661342|ref|ZP_08149968.1| hypothetical protein HMPREF0490_00701 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|325472291|gb|EGC75503.1| hypothetical protein HMPREF0490_00701 [Lachnospiraceae bacterium
          4_1_37FAA]
          Length = 91

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+K +S   GL++  +   V  + + I +  ++GE + I+ F TF V+++  R+G
Sbjct: 1  MNKLELIKEVSGRTGLTQVATKDVVEAVLDVITNQLIKGEKVAIAGFGTFEVRERAERMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN Q+ +E+ I   + V FKA   LK ++ 
Sbjct: 61 RNPQSGEEMLIAASKNVKFKAGKALKDKVN 90


>gi|325579267|ref|ZP_08149223.1| DNA-binding protein HU [Haemophilus parainfluenzae ATCC 33392]
 gi|301155512|emb|CBW14979.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Haemophilus parainfluenzae T3T1]
 gi|325159502|gb|EGC71636.1| DNA-binding protein HU [Haemophilus parainfluenzae ATCC 33392]
          Length = 90

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+    L++K +   +      I  S  +GE +++  F TF V ++ +R G
Sbjct: 1  MNKTDLIDAIASAAELNKKQAKAALEATLAAITGSLKKGEPVQLIGFGTFKVNKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E+KI   +V  F +   LK  I 
Sbjct: 61 RNPQTGAEIKIAASKVPAFVSGKALKDAIK 90


>gi|42523574|ref|NP_968954.1| DNA-binding protein HU-alpha (HU-2) [Bdellovibrio bacteriovorus
          HD100]
 gi|39575780|emb|CAE79947.1| DNA-binding protein HU-alpha (HU-2) [Bdellovibrio bacteriovorus
          HD100]
          Length = 90

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 43/90 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV+ ++++   ++  S   +      I ++   G+ +K+  F TF    + +R G
Sbjct: 1  MNKAQLVELVAEKTKTTKSQSELILDATLEAIQEALKDGDEVKLVGFGTFSRSSRKARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + VKI    +  FK    LK  + 
Sbjct: 61 RNPKTGETVKIPSAYIPKFKPGKDLKDALN 90


>gi|237748740|ref|ZP_04579220.1| DNA-binding protein Hu-beta [Oxalobacter formigenes OXCC13]
 gi|229380102|gb|EEO30193.1| DNA-binding protein Hu-beta [Oxalobacter formigenes OXCC13]
          Length = 90

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+K   +S+  + R +  + + +  S    +++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIAKSADISKAAAARSLDAVIDAVTTSLKNNDSVTLVGFGTFSVGERAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + +KI   +V  F+A  +LK  + 
Sbjct: 61 RNPRTGEVIKIKSAKVPKFRAGKLLKDAVN 90


>gi|254515152|ref|ZP_05127213.1| integration host factor, beta subunit [gamma proteobacterium
          NOR5-3]
 gi|219677395|gb|EED33760.1| integration host factor, beta subunit [gamma proteobacterium
          NOR5-3]
          Length = 98

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+++I+ K+  LS KD    V T+  ++ +S   G  I+I  F +F +  +  R 
Sbjct: 1  MTKSELIEAIALKQSQLSTKDVELAVKTVIEQMSNSLSSGGRIEIRGFGSFSLHYREPRR 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T   V++  + V  FK    L+ R+   ++ 
Sbjct: 61 GRNPKTGDAVELTGKYVPHFKPGKELRDRVNLGLQA 96


>gi|212702269|ref|ZP_03310397.1| hypothetical protein DESPIG_00280 [Desulfovibrio piger ATCC
          29098]
 gi|212674332|gb|EEB34815.1| hypothetical protein DESPIG_00280 [Desulfovibrio piger ATCC
          29098]
          Length = 90

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV+ I+ +  L++  + R +      + +S  + + + ++ F TF V+ +  R G
Sbjct: 1  MTKADLVEKIAAKANLTKAAAERALNAFLASVEESLAKDDRLTLTGFGTFVVETRKERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I   ++V F+   +LK  +
Sbjct: 61 RNPRTGETLTIPACKMVKFRPGKMLKDAL 89


>gi|260878351|ref|ZP_05890706.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AN-5034]
 gi|308092754|gb|EFO42449.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AN-5034]
          Length = 86

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 43/84 (51%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           LV+ I++   +S+  + R +      +  +   G+ + +  F TF V+ + +R GRN +
Sbjct: 1  QLVEQIAENADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTGRNPK 60

Query: 69 TNQEVKIDPRRVVVFKASSILKKR 92
          T +E++I   +V  FKA   LK  
Sbjct: 61 TGEEIQIAEAKVPAFKAGKALKDA 84


>gi|262196426|ref|YP_003267635.1| histone family protein DNA-binding protein [Haliangium ochraceum
          DSM 14365]
 gi|262079773|gb|ACY15742.1| histone family protein DNA-binding protein [Haliangium ochraceum
          DSM 14365]
          Length = 168

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 52/93 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L++ +S+   L    + + V  +F+ +  +   G+ I+I  F +F V+Q  +  G
Sbjct: 1  MTKSELIEQVSELLKLPNGKAEQIVNCIFDSMVSALQDGDGIEIRGFGSFTVRQYKAYEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          RN +T + V + P+R+  FK    L++R+   +
Sbjct: 61 RNPRTGETVHVAPKRLPFFKVGKDLRERVNRAV 93


>gi|13476997|ref|NP_108567.1| DNA-binding protein HRm [Mesorhizobium loti MAFF303099]
 gi|260460894|ref|ZP_05809144.1| histone family protein DNA-binding protein [Mesorhizobium
          opportunistum WSM2075]
 gi|319784101|ref|YP_004143577.1| histone family protein DNA-binding protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
 gi|14027760|dbj|BAB54353.1| DNA-binding protein; HRm [Mesorhizobium loti MAFF303099]
 gi|259033471|gb|EEW34732.1| histone family protein DNA-binding protein [Mesorhizobium
          opportunistum WSM2075]
 gi|317169989|gb|ADV13527.1| histone family protein DNA-binding protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
          Length = 90

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++    +S+ D+   V  +F+ I     +G  +++  F  F V ++ +  G
Sbjct: 1  MNKNELVSAVADAASISKGDAQSAVDAVFSVITGELKKGGDVRLVGFGNFTVSKRAASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  EVKI  R V  F A   LK  + 
Sbjct: 61 RNPQTGAEVKIPARTVPKFSAGKGLKDAVN 90


>gi|319405751|emb|CBI79374.1| integration host factor alpha subunit [Bartonella sp. AR 15-3]
          Length = 103

 Score =  125 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/100 (52%), Positives = 71/100 (71%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           SKT+TR+DL  ++ ++ GLS  +S   V  +  EIC+S V+GE +K+SSFATF V+ K  
Sbjct: 3   SKTVTRADLAGAVCRKVGLSHTESADLVELVLGEICNSLVKGEMVKLSSFATFQVRDKSE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           RVGRN +T  E  I PRRVV FKA+++LKKRI+D  R +K
Sbjct: 63  RVGRNPKTGVEASIPPRRVVTFKAANVLKKRILDTHRAKK 102


>gi|227499519|ref|ZP_03929626.1| DNA-binding protein HU [Anaerococcus tetradius ATCC 35098]
 gi|227218398|gb|EEI83649.1| DNA-binding protein HU [Anaerococcus tetradius ATCC 35098]
          Length = 92

 Score =  125 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +IS++ GL + ++ + +      + +S + G+ +++  F TF V+ + +R G
Sbjct: 1  MNKSELLINISEKSGLKKSEAEKALNAFLETVTESLIAGDKVQLVGFGTFEVRDRKAREG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95
          RN +  +E ++I   +  VFKA   LK+ +  
Sbjct: 61 RNPRKPEEVIQIPASKAPVFKAGKTLKEAVNK 92


>gi|167897237|ref|ZP_02484639.1| putative bacterial nucleoid DNA-binding protein [Burkholderia
          pseudomallei 7894]
          Length = 90

 Score =  125 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+ +++K   L++  + + V  + + I    +    + +S F TF +  + +R G
Sbjct: 1  MNKSQLIDAVAKHAELTKAQAAQSVDAVLDAIRTGLLEDGDVALSGFGTFGISARAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T + ++I   + V FK    LK  + 
Sbjct: 61 RNPATGEAIEIAASKAVKFKPGKALKDALN 90


>gi|309796446|ref|ZP_07690854.1| DNA-binding protein HU [Escherichia coli MS 145-7]
 gi|308119951|gb|EFO57213.1| DNA-binding protein HU [Escherichia coli MS 145-7]
          Length = 90

 Score =  125 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  ++++  +S+  +   V  L N + +    G  + ++ F TFHVK++ +R G
Sbjct: 1  MNKSELIMKVAEDADISKAKAEAAVNALINSVKEVLKAGGTVALTGFGTFHVKERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++I    +  FKA   LK  + 
Sbjct: 61 RNPQTGENIQIAAANIPGFKAGKGLKDSVN 90


>gi|183598363|ref|ZP_02959856.1| hypothetical protein PROSTU_01755 [Providencia stuartii ATCC
          25827]
 gi|188020539|gb|EDU58579.1| hypothetical protein PROSTU_01755 [Providencia stuartii ATCC
          25827]
          Length = 95

 Score =  125 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  LS K     V  +   + D+   GE I++  F +F +  +  RV
Sbjct: 1  MTKSELIERLASQQSHLSAKTVEDAVKEILEHMADTLAGGERIEVRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R+ 
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91


>gi|163759320|ref|ZP_02166406.1| histone-like protein [Hoeflea phototrophica DFL-43]
 gi|162283724|gb|EDQ34009.1| histone-like protein [Hoeflea phototrophica DFL-43]
          Length = 90

 Score =  125 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 47/88 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ G+S+ D+T  V  +F  I      G  +++  F  F V ++ +  G
Sbjct: 1  MNKNELVAAVAEKSGISKGDATSAVEAVFETITGELKNGGDVRLIGFGNFTVSRREASKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN QT +EV I  R V  F A   LK  
Sbjct: 61 RNPQTGKEVDIPARNVPKFSAGKGLKDA 88


>gi|23016137|ref|ZP_00055896.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magnetotacticum MS-1]
          Length = 99

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 1/93 (1%)

Query: 3  KTITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          K++T+S+L+  +++    L ++D  R VTT+F+EI  +  RG+ +++  F  F VK++  
Sbjct: 2  KSMTKSELIARLAEANPHLYQRDVERIVTTIFDEIASALARGDRVELRGFGAFSVKKRDP 61

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          R GRN +T + V +D + V  FK    L++++ 
Sbjct: 62 RTGRNPRTGETVSVDGKAVPFFKTGKQLREKLN 94


>gi|15887688|ref|NP_353369.1| integration host factor subunit beta [Agrobacterium tumefaciens
           str. C58]
 gi|325291772|ref|YP_004277636.1| integration host factor subunit beta [Agrobacterium sp. H13-3]
 gi|24418456|sp|Q8UIF9|IHFB_AGRT5 RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|15155245|gb|AAK86154.1| integration host factor, beta subunit [Agrobacterium tumefaciens
           str. C58]
 gi|325059625|gb|ADY63316.1| integration host factor subunit beta [Agrobacterium sp. H13-3]
          Length = 100

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 1/98 (1%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV+ ++     L  +D    V  + +EI D+   G  +++  F  F VK + SR 
Sbjct: 1   MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T + V ++ + V  FK    L++R+   M   +
Sbjct: 61  GRNPRTGESVFVEEKWVPFFKTGKELRERLNPGMGDEE 98


>gi|23501064|ref|NP_697191.1| integration host factor subunit beta [Brucella suis 1330]
 gi|148559718|ref|YP_001258186.1| integration host factor subunit beta [Brucella ovis ATCC 25840]
 gi|153007510|ref|YP_001368725.1| integration host factor subunit beta [Ochrobactrum anthropi ATCC
          49188]
 gi|161618141|ref|YP_001592028.1| integration host factor subunit beta [Brucella canis ATCC 23365]
 gi|163842423|ref|YP_001626827.1| integration host factor subunit beta [Brucella suis ATCC 23445]
 gi|254700962|ref|ZP_05162790.1| integration host factor subunit beta [Brucella suis bv. 5 str.
          513]
 gi|254705332|ref|ZP_05167160.1| integration host factor subunit beta [Brucella suis bv. 3 str.
          686]
 gi|254707154|ref|ZP_05168982.1| integration host factor subunit beta [Brucella pinnipedialis
          M163/99/10]
 gi|254709302|ref|ZP_05171113.1| integration host factor subunit beta [Brucella pinnipedialis
          B2/94]
 gi|254713275|ref|ZP_05175086.1| integration host factor subunit beta [Brucella ceti M644/93/1]
 gi|254716372|ref|ZP_05178183.1| integration host factor subunit beta [Brucella ceti M13/05/1]
 gi|254718369|ref|ZP_05180180.1| integration host factor subunit beta [Brucella sp. 83/13]
 gi|256030825|ref|ZP_05444439.1| integration host factor subunit beta [Brucella pinnipedialis
          M292/94/1]
 gi|256060295|ref|ZP_05450468.1| integration host factor subunit beta [Brucella neotomae 5K33]
 gi|256158850|ref|ZP_05456707.1| integration host factor subunit beta [Brucella ceti M490/95/1]
 gi|256254231|ref|ZP_05459767.1| integration host factor subunit beta [Brucella ceti B1/94]
 gi|256368617|ref|YP_003106123.1| integration host factor beta subunit [Brucella microti CCM 4915]
 gi|260169729|ref|ZP_05756540.1| integration host factor subunit beta [Brucella sp. F5/99]
 gi|260567209|ref|ZP_05837679.1| integration host factor subunit beta [Brucella suis bv. 4 str.
          40]
 gi|261218154|ref|ZP_05932435.1| integration host factor subunit beta [Brucella ceti M13/05/1]
 gi|261221380|ref|ZP_05935661.1| integration host factor subunit beta [Brucella ceti B1/94]
 gi|261314632|ref|ZP_05953829.1| integration host factor subunit beta [Brucella pinnipedialis
          M163/99/10]
 gi|261316811|ref|ZP_05956008.1| integration host factor subunit beta [Brucella pinnipedialis
          B2/94]
 gi|261320998|ref|ZP_05960195.1| integration host factor subunit beta [Brucella ceti M644/93/1]
 gi|261324267|ref|ZP_05963464.1| integration host factor subunit beta [Brucella neotomae 5K33]
 gi|261751480|ref|ZP_05995189.1| integration host factor subunit beta [Brucella suis bv. 5 str.
          513]
 gi|261756043|ref|ZP_05999752.1| integration host factor subunit beta [Brucella suis bv. 3 str.
          686]
 gi|261759267|ref|ZP_06002976.1| integration host factor subunit beta [Brucella sp. F5/99]
 gi|265983330|ref|ZP_06096065.1| integration host factor subunit beta [Brucella sp. 83/13]
 gi|265987880|ref|ZP_06100437.1| integration host factor subunit beta [Brucella pinnipedialis
          M292/94/1]
 gi|265997341|ref|ZP_06109898.1| integration host factor subunit beta [Brucella ceti M490/95/1]
 gi|306839600|ref|ZP_07472404.1| integration host factor, beta subunit [Brucella sp. NF 2653]
 gi|306844421|ref|ZP_07477011.1| integration host factor, beta subunit [Brucella sp. BO1]
 gi|38258168|sp|Q8G304|IHFB_BRUSU RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|166918542|sp|A5VN89|IHFB_BRUO2 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|166918556|sp|A6WV92|IHFB_OCHA4 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|189045033|sp|A9M798|IHFB_BRUC2 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|189045034|sp|B0CIR1|IHFB_BRUSI RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|23346931|gb|AAN29106.1| integration host factor, beta subunit [Brucella suis 1330]
 gi|148370975|gb|ABQ60954.1| integration host factor, beta subunit [Brucella ovis ATCC 25840]
 gi|151559398|gb|ABS12896.1| integration host factor, beta subunit [Ochrobactrum anthropi ATCC
          49188]
 gi|161334952|gb|ABX61257.1| integration host factor, beta subunit [Brucella canis ATCC 23365]
 gi|163673146|gb|ABY37257.1| integration host factor, beta subunit [Brucella suis ATCC 23445]
 gi|255998775|gb|ACU47174.1| integration host factor beta subunit [Brucella microti CCM 4915]
 gi|260156727|gb|EEW91807.1| integration host factor subunit beta [Brucella suis bv. 4 str.
          40]
 gi|260919964|gb|EEX86617.1| integration host factor subunit beta [Brucella ceti B1/94]
 gi|260923243|gb|EEX89811.1| integration host factor subunit beta [Brucella ceti M13/05/1]
 gi|261293688|gb|EEX97184.1| integration host factor subunit beta [Brucella ceti M644/93/1]
 gi|261296034|gb|EEX99530.1| integration host factor subunit beta [Brucella pinnipedialis
          B2/94]
 gi|261300247|gb|EEY03744.1| integration host factor subunit beta [Brucella neotomae 5K33]
 gi|261303658|gb|EEY07155.1| integration host factor subunit beta [Brucella pinnipedialis
          M163/99/10]
 gi|261739251|gb|EEY27247.1| integration host factor subunit beta [Brucella sp. F5/99]
 gi|261741233|gb|EEY29159.1| integration host factor subunit beta [Brucella suis bv. 5 str.
          513]
 gi|261745796|gb|EEY33722.1| integration host factor subunit beta [Brucella suis bv. 3 str.
          686]
 gi|262551809|gb|EEZ07799.1| integration host factor subunit beta [Brucella ceti M490/95/1]
 gi|264660077|gb|EEZ30338.1| integration host factor subunit beta [Brucella pinnipedialis
          M292/94/1]
 gi|264661922|gb|EEZ32183.1| integration host factor subunit beta [Brucella sp. 83/13]
 gi|306275234|gb|EFM56984.1| integration host factor, beta subunit [Brucella sp. BO1]
 gi|306405298|gb|EFM61573.1| integration host factor, beta subunit [Brucella sp. NF 2653]
          Length = 94

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I+ +   L ++D    V  +F+EI ++   G  +++  F  F VK + +R 
Sbjct: 1  MIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T + V ++ + V  FK    L+ R+   +
Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKELRDRLNGAV 94


>gi|163747513|ref|ZP_02154863.1| integration host factor subunit beta [Oceanibulbus indolifex
          HEL-45]
 gi|161379191|gb|EDQ03610.1| integration host factor subunit beta [Oceanibulbus indolifex
          HEL-45]
          Length = 94

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+     L ++D  R V T+F+EI  +  RG+ +++  F  F VK++ +RV
Sbjct: 1  MIRSELIQKIADDNPHLYQRDVERIVNTVFDEITGAMSRGDRVELRGFGAFSVKKRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V +D + V  FK   +L+ R+  
Sbjct: 61 GRNPRTGETVNVDEKHVPFFKTGKLLRDRLNG 92


>gi|239831002|ref|ZP_04679331.1| integration host factor, beta subunit [Ochrobactrum intermedium LMG
           3301]
 gi|239823269|gb|EEQ94837.1| integration host factor, beta subunit [Ochrobactrum intermedium LMG
           3301]
          Length = 120

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 3   KTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           K + +S+LV+ I+ +   L ++D    V  +F+EI ++   G  +++  F  F VK + +
Sbjct: 25  KAVIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPA 84

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           R GRN +T + V ++ + V  FK    L+ R+   +
Sbjct: 85  RSGRNPRTGETVDVEEKWVPFFKTGKELRDRLNGAV 120


>gi|167563627|ref|ZP_02356543.1| integration host factor subunit beta [Burkholderia oklahomensis
           EO147]
 gi|167570789|ref|ZP_02363663.1| integration host factor subunit beta [Burkholderia oklahomensis
           C6786]
          Length = 107

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 2/106 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + D+  +G  I+I  F +F + ++ +RV
Sbjct: 1   MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
           GRN ++ ++V++  + V  FK    L++R+ D   G     D+   
Sbjct: 61  GRNPKSGEKVQVPEKYVPHFKPGKELRERV-DGRAGEPLKNDEPED 105


>gi|90023476|ref|YP_529303.1| nucleoid protein Hbs [Saccharophagus degradans 2-40]
 gi|89953076|gb|ABD83091.1| bacterial nucleoid protein Hbs [Saccharophagus degradans 2-40]
          Length = 91

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDLV++++    LS + +   V+ +F+ I ++  R +++ +  F +F  +++ +R G
Sbjct: 1  MRKSDLVEAVANAADLSPRQADDAVSAIFDHITNALARKDSVNLVGFGSFITRERAARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT   + I    +  FK    LK  ++D
Sbjct: 61 RNPQTGAAINIAASVLPAFKPGKKLKDALVD 91


>gi|269468161|gb|EEZ79863.1| DNA-binding protein HU [uncultured SUP05 cluster bacterium]
          Length = 91

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+++I+   GLS+ D+ + +    + I  +  +G+ ++I+ F +F  + + +R G
Sbjct: 1  MNKTELIEAIASAAGLSKADAGKALNATTDAITGAMAKGDGVQITGFGSFITRARAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT   ++I    V  FKA   LK+ +  
Sbjct: 61 RNPQTGATIQIKASTVAAFKAGKALKEAVNK 91


>gi|332981382|ref|YP_004462823.1| nucleoid protein Hbs [Mahella australiensis 50-1 BON]
 gi|332699060|gb|AEE96001.1| bacterial nucleoid protein Hbs [Mahella australiensis 50-1 BON]
          Length = 91

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++  +++KD+ + +    + + ++ V G+ +++  F TF V  + +R G
Sbjct: 1  MNKAELIAKMAEKGEMTKKDAEKALNAFVDAVTEALVNGDTVQLVGFGTFRVSPRSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          R+ QT +E+ I   +  VFKA   LK  +  
Sbjct: 61 RDPQTQKEIMIPASKAPVFKAGKALKDAVKG 91


>gi|325479553|gb|EGC82649.1| DNA-binding protein HU-beta [Anaerococcus prevotii
          ACS-065-V-Col13]
          Length = 92

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +IS++ GL + +S + +      + ++ + GE +++  F TF V+ + +R G
Sbjct: 1  MNKSELLINISEKSGLKKSESEKALNAFLETVTEALIEGEKVQLVGFGTFEVRDRKAREG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95
          RN +  +E ++I   +  VFKA   LK+ +  
Sbjct: 61 RNPRKPEEVIQIPASKAPVFKAGKTLKEAVNK 92


>gi|229589172|ref|YP_002871291.1| integration host factor subunit beta [Pseudomonas fluorescens
          SBW25]
 gi|259492037|sp|C3K6K2|IHFB_PSEFS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|229361038|emb|CAY47900.1| integration host factor beta-subunit [Pseudomonas fluorescens
          SBW25]
 gi|330960539|gb|EGH60799.1| integration host factor subunit beta [Pseudomonas syringae pv.
          maculicola str. ES4326]
          Length = 98

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I    GL S KD    + T+  ++      G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T Q V +D + V  FK    L+ R+ +D  
Sbjct: 61 GRNPKTGQSVSLDGKFVPHFKPGKELRDRVNEDEE 95


>gi|149911448|ref|ZP_01900065.1| DNA-binding protein HU-alpha [Moritella sp. PE36]
 gi|149805479|gb|EDM65486.1| DNA-binding protein HU-alpha [Moritella sp. PE36]
          Length = 94

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+ +++ +  L++  +   +  + + I +S    EA+++  F TF V ++ +R+G
Sbjct: 1  MNKTQLIDAVAAKADLTKVQAKAALEEILSAITESLKEKEAVQLIGFGTFKVSERSARIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN QT +E++I    +  F A   LK  + +  +
Sbjct: 61 RNPQTGEEIQISAATIPAFVAGKALKDAVKNANK 94


>gi|72382731|ref|YP_292086.1| histone-like DNA-binding protein [Prochlorococcus marinus str.
          NATL2A]
 gi|124026452|ref|YP_001015567.1| histone-like DNA-binding protein [Prochlorococcus marinus str.
          NATL1A]
 gi|72002581|gb|AAZ58383.1| bacterial nucleoid protein Hbs [Prochlorococcus marinus str.
          NATL2A]
 gi|123961520|gb|ABM76303.1| Bacterial histone-like DNA-binding protein [Prochlorococcus
          marinus str. NATL1A]
          Length = 91

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ D +  V    + I DS V G+ + I  F +F  + + +R G
Sbjct: 1  MNKADLVNLVAARTELTKTDVSLVVDAAIDTIIDSVVEGKKVSILGFGSFEPRDRSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T +++ I  +RV  F A  + K R+  
Sbjct: 61 LNPKTGEKIAIPAKRVPAFTAGKLFKDRVQG 91


>gi|148259288|ref|YP_001233415.1| integration host factor, alpha subunit [Acidiphilium cryptum
          JF-5]
 gi|326402443|ref|YP_004282524.1| integration host factor alpha subunit [Acidiphilium multivorum
          AIU301]
 gi|146400969|gb|ABQ29496.1| integration host factor, alpha subunit [Acidiphilium cryptum
          JF-5]
 gi|325049304|dbj|BAJ79642.1| integration host factor alpha subunit [Acidiphilium multivorum
          AIU301]
          Length = 104

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/93 (46%), Positives = 61/93 (65%), Gaps = 1/93 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS T+TR+ L +SI    GLSR +S   +  + + +  +   GE+IKIS F TF V+QKG
Sbjct: 1  MS-TLTRAGLAESIYAAVGLSRNESAALLEAVLDRMKQALAEGESIKISGFGTFSVRQKG 59

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           R+GRN +T +EV I PRRV+VF+ S IL+  +
Sbjct: 60 RRIGRNPKTGREVPILPRRVLVFRPSQILRDAV 92


>gi|296314009|ref|ZP_06863950.1| DNA-binding protein HU-beta [Neisseria polysaccharea ATCC 43768]
 gi|296839379|gb|EFH23317.1| DNA-binding protein HU-beta [Neisseria polysaccharea ATCC 43768]
          Length = 91

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I+ E  L+++D+  FV    + +  +   G+ + +  F +FH  Q   R G
Sbjct: 1  MNKSELIQAIADEAELNKRDAAEFVDAFVSVVTQTLKDGKDVTLVGFGSFHAAQSAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I  R+   F A   LK  + 
Sbjct: 61 RNPKTGEPLIIAARKTPKFHAGKALKDAVN 90


>gi|219681418|ref|YP_002467803.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. 5A
          (Acyrthosiphon pisum)]
 gi|257471092|ref|ZP_05635091.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. LSR1
          (Acyrthosiphon pisum)]
 gi|219624261|gb|ACL30416.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. 5A
          (Acyrthosiphon pisum)]
          Length = 92

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  ISK+  LS+  +   + T  + I DS  +GE+++I  F TF V  + SR G
Sbjct: 1  MNKTQLINVISKKSNLSKTQAKLTLETTLSTIIDSLKKGESVQIVGFGTFKVNLRSSRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E++I   +V  F +   LK  I  
Sbjct: 61 RNPQTGKEIQIPATKVPSFTSGKTLKNAIKQ 91


>gi|153952810|ref|YP_001393575.1| Hup [Clostridium kluyveri DSM 555]
 gi|219853475|ref|YP_002470597.1| hypothetical protein CKR_0132 [Clostridium kluyveri NBRC 12016]
 gi|146345691|gb|EDK32227.1| Hup [Clostridium kluyveri DSM 555]
 gi|219567199|dbj|BAH05183.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 91

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  I+++  L++KD+   +      + ++  +GE +++  F TF  +++ +RVG
Sbjct: 1  MNKSELIVGIAEKSKLTKKDAEAALKGFIESVEETLEKGEKVQLVGFGTFETRKRAARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + + I    V VFKA    + ++  
Sbjct: 61 RNPRTKEVINIPESTVPVFKAGKEFRDKVNK 91


>gi|15677102|ref|NP_274254.1| DNA-binding protein HU-beta [Neisseria meningitidis MC58]
 gi|121634923|ref|YP_975168.1| putative DNA-binding protein [Neisseria meningitidis FAM18]
 gi|161870073|ref|YP_001599243.1| DNA-binding protein [Neisseria meningitidis 053442]
 gi|218768232|ref|YP_002342744.1| putative DNA-binding protein [Neisseria meningitidis Z2491]
 gi|254805009|ref|YP_003083230.1| DNA-binding protein [Neisseria meningitidis alpha14]
 gi|304387508|ref|ZP_07369697.1| DNA-binding protein HU-beta [Neisseria meningitidis ATCC 13091]
 gi|54036950|sp|P64389|DBHB_NEIMB RecName: Full=DNA-binding protein HU-beta
 gi|54041019|sp|P64388|DBHB_NEIMA RecName: Full=DNA-binding protein HU-beta
 gi|7226469|gb|AAF41611.1| DNA-binding protein HU-beta [Neisseria meningitidis MC58]
 gi|120866629|emb|CAM10380.1| putative DNA-binding protein [Neisseria meningitidis FAM18]
 gi|121052240|emb|CAM08565.1| putative DNA-binding protein [Neisseria meningitidis Z2491]
 gi|161595626|gb|ABX73286.1| DNA-binding protein [Neisseria meningitidis 053442]
 gi|254668551|emb|CBA06006.1| DNA-binding protein [Neisseria meningitidis alpha14]
 gi|254669519|emb|CBA03455.1| DNA-binding protein HU-beta [Neisseria meningitidis alpha153]
 gi|261392508|emb|CAX50059.1| DNA-binding protein HU [Neisseria meningitidis 8013]
 gi|304338395|gb|EFM04516.1| DNA-binding protein HU-beta [Neisseria meningitidis ATCC 13091]
 gi|308389323|gb|ADO31643.1| putative DNA-binding protein [Neisseria meningitidis alpha710]
 gi|316985087|gb|EFV64040.1| DNA-binding protein HU-beta [Neisseria meningitidis H44/76]
 gi|319410479|emb|CBY90840.1| DNA-binding protein HU-A [Neisseria meningitidis WUE 2594]
 gi|325128364|gb|EGC51248.1| DNA-binding protein HU-beta [Neisseria meningitidis N1568]
 gi|325132586|gb|EGC55279.1| DNA-binding protein HU-beta [Neisseria meningitidis M6190]
 gi|325134523|gb|EGC57168.1| DNA-binding protein HU-beta [Neisseria meningitidis M13399]
 gi|325136284|gb|EGC58892.1| DNA-binding protein HU-beta [Neisseria meningitidis M0579]
 gi|325138359|gb|EGC60928.1| DNA-binding protein HU-beta [Neisseria meningitidis ES14902]
 gi|325140540|gb|EGC63061.1| DNA-binding protein HU-beta [Neisseria meningitidis CU385]
 gi|325144626|gb|EGC66925.1| DNA-binding protein HU-beta [Neisseria meningitidis M01-240013]
 gi|325198363|gb|ADY93819.1| DNA-binding protein HU-beta [Neisseria meningitidis G2136]
 gi|325200140|gb|ADY95595.1| DNA-binding protein HU-beta [Neisseria meningitidis H44/76]
 gi|325202076|gb|ADY97530.1| DNA-binding protein HU-beta [Neisseria meningitidis M01-240149]
 gi|325204214|gb|ADY99667.1| DNA-binding protein HU-beta [Neisseria meningitidis M01-240355]
 gi|325205994|gb|ADZ01447.1| DNA-binding protein HU-beta [Neisseria meningitidis M04-240196]
 gi|325208170|gb|ADZ03622.1| DNA-binding protein HU-beta [Neisseria meningitidis NZ-05/33]
          Length = 89

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I++E  +S+  + + +    N +  +  +G+ + +  F TF+V ++  R G
Sbjct: 1  MNKSELIEAIAQEADISKAAAQKALDATTNAVTTALKQGDTVTLVGFGTFYVGERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I   +   F+A   LK  +
Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKALKDAL 89


>gi|39998222|ref|NP_954173.1| DNA-binding protein HU [Geobacter sulfurreducens PCA]
 gi|39985168|gb|AAR36523.1| DNA-binding protein HU [Geobacter sulfurreducens PCA]
 gi|298507158|gb|ADI85881.1| histone-like protein [Geobacter sulfurreducens KN400]
          Length = 94

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 52/94 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV +++K   L++  + + V  + + + D+  +G+ + +  F +F V  + +R G
Sbjct: 1  MTKAELVDAVAKSANLTKAAADKAVGAVISAVSDALKKGDKVTLVGFGSFEVSTRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN QT +E+KI   +V  F+    LK  +    +
Sbjct: 61 RNPQTGKEIKIAAAKVPKFRPGKALKDAVAGKKK 94


>gi|56552018|ref|YP_162857.1| integration host factor subunit alpha [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241761906|ref|ZP_04759991.1| integration host factor, alpha subunit [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260752446|ref|YP_003225339.1| integration host factor, subunit alpha [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|5834289|gb|AAD53893.1|AF176314_3 HimA [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543592|gb|AAV89746.1| integration host factor, alpha subunit [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241373586|gb|EER63158.1| integration host factor, alpha subunit [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258551809|gb|ACV74755.1| integration host factor, alpha subunit [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 113

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 60/94 (63%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            T+TR+D+   +  E GLSR DS + +  +   I D+  +GE +KIS F +F ++ K  R
Sbjct: 19  PTLTRADITDMLYHEVGLSRADSAKMIEQMLGHITDALKKGENVKISGFGSFILRDKNER 78

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           VGRN +T  EV I PRRV+ F+AS ++++RI+  
Sbjct: 79  VGRNPKTGIEVPIAPRRVLTFRASQLMRQRIIKG 112


>gi|218134789|ref|ZP_03463593.1| hypothetical protein BACPEC_02692 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990174|gb|EEC56185.1| hypothetical protein BACPEC_02692 [Bacteroides pectinophilus ATCC
           43243]
          Length = 126

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 51/91 (56%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++LV ++S++  L++KDS + +    + + +   + E I++  F TF V ++ +R G
Sbjct: 36  MNKTELVAAMSEKSELTKKDSEKALKAFMDVVAEELKKDEKIQLVGFGTFEVAKRAARTG 95

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           +N QT + +KI   +   FKA   LK  +  
Sbjct: 96  KNPQTGKAIKIPATKAPKFKAGKALKDTVNK 126


>gi|160898320|ref|YP_001563902.1| histone family protein DNA-binding protein [Delftia acidovorans
          SPH-1]
 gi|160363904|gb|ABX35517.1| histone family protein DNA-binding protein [Delftia acidovorans
          SPH-1]
          Length = 90

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+    +S+  + R + +    +  +  +G  + +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIANNADISKAAAARALDSTIEAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + +KI   +V  F+    LK  + 
Sbjct: 61 RNPRTGETIKIKAAKVPKFRPGKALKDALN 90


>gi|260220853|emb|CBA28834.1| Integration host factor subunit beta [Curvibacter putative
          symbiont of Hydra magnipapillata]
          Length = 103

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDLV+ ++     L+ +D+   V  + + + D+ VRG  I+I  F +F + ++  R+
Sbjct: 1  MTRSDLVEELANRFSQLTHRDAEFAVKAILDAMNDALVRGHRIEIRGFGSFSINRRPPRM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V I  +RV  FK    L++ +
Sbjct: 61 GRNPRSGESVAIPEKRVPHFKPGKALREAV 90


>gi|212635294|ref|YP_002311819.1| integration host factor subunit beta [Shewanella piezotolerans WP3]
 gi|212556778|gb|ACJ29232.1| Integration host factor, beta subunit [Shewanella piezotolerans
           WP3]
          Length = 113

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5   ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L++ ++ ++  LS K+    +  +  ++ D+   G+ I+I  F +F +  +  R 
Sbjct: 19  MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMADTLEGGDRIEIRGFGSFSLHYRAPRT 78

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN +T   V ++ + V  FK    L++R+
Sbjct: 79  GRNPKTGTSVDLEGKYVPHFKPGKELRERV 108


>gi|209965767|ref|YP_002298682.1| integration host factor, beta subunit [Rhodospirillum centenum
          SW]
 gi|226709803|sp|B6IUP4|IHFB_RHOCS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|209959233|gb|ACI99869.1| integration host factor, beta subunit [Rhodospirillum centenum
          SW]
          Length = 93

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 59/93 (63%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  +++    L ++D  + VTT+F+EI D+  RG+ +++  F  F VK++ +R+
Sbjct: 1  MTKSELILRLAERNPHLYQRDVEKIVTTIFDEITDALARGDRVELRGFGAFSVKKRDARL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V ++ + +  FK    L++R+  D
Sbjct: 61 GRNPRTGETVDVNQKFIPFFKTGKQLRERLNTD 93


>gi|123969052|ref|YP_001009910.1| histone-like DNA-binding protein [Prochlorococcus marinus str.
          AS9601]
 gi|126696845|ref|YP_001091731.1| histone-like DNA-binding protein [Prochlorococcus marinus str.
          MIT 9301]
 gi|157413883|ref|YP_001484749.1| histone-like DNA-binding protein [Prochlorococcus marinus str.
          MIT 9215]
 gi|254526156|ref|ZP_05138208.1| bacterial nucleoid DNA-binding protein [Prochlorococcus marinus
          str. MIT 9202]
 gi|91070374|gb|ABE11288.1| bacterial histone-like DNA-binding protein [uncultured
          Prochlorococcus marinus clone HF10-88H9]
 gi|123199162|gb|ABM70803.1| Bacterial histone-like DNA-binding protein [Prochlorococcus
          marinus str. AS9601]
 gi|126543888|gb|ABO18130.1| Bacterial histone-like DNA-binding protein [Prochlorococcus
          marinus str. MIT 9301]
 gi|157388458|gb|ABV51163.1| Histone-like DNA-binding protein [Prochlorococcus marinus str.
          MIT 9215]
 gi|221537580|gb|EEE40033.1| bacterial nucleoid DNA-binding protein [Prochlorococcus marinus
          str. MIT 9202]
          Length = 91

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ D +  V      I DS V G+ + +  F +F  + + +R G
Sbjct: 1  MNKADLVNLVAARTELTKTDVSLVVDAAIETIVDSVVEGKKVSLLGFGSFEPRDRSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T +++ I  +RV  F A  + K R+  
Sbjct: 61 LNPKTGEKIAIPAKRVPTFSAGKLFKDRVQG 91


>gi|330808295|ref|YP_004352757.1| transcription factor, unclassified [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327376403|gb|AEA67753.1| putative Transcription factor, unclassified [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 98

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I    GL S KD    + T+  ++      G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T Q V +D + V  FK    L+ R+ ++
Sbjct: 61 GRNPKTGQSVSLDGKFVPHFKPGKELRDRVNEE 93


>gi|323498284|ref|ZP_08103286.1| integration host factor subunit beta [Vibrio sinaloensis DSM
          21326]
 gi|323316712|gb|EGA69721.1| integration host factor subunit beta [Vibrio sinaloensis DSM
          21326]
          Length = 93

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + +++  LS K+    V  +   +  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLESGDRIEIRGFGSFSLHFREPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L++R+ 
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91


>gi|110681046|ref|YP_684053.1| integration host factor subunit beta [Roseobacter denitrificans
          OCh 114]
 gi|122972521|sp|Q161H6|IHFB_ROSDO RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|109457162|gb|ABG33367.1| integration host factor, beta subunit [Roseobacter denitrificans
          OCh 114]
          Length = 94

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L ++D  R V T+F E+  +  RG+ +++  F  F VK++ +R+
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTIFEEVTGAMARGDRVELRGFGAFSVKKRDARI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V ++ + V  FK   +L+ R+  
Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRLNG 92


>gi|91783523|ref|YP_558729.1| nucleoid protein Hbs [Burkholderia xenovorans LB400]
 gi|186475779|ref|YP_001857249.1| histone family protein DNA-binding protein [Burkholderia phymatum
          STM815]
 gi|91687477|gb|ABE30677.1| bacterial nucleoid protein Hbs [Burkholderia xenovorans LB400]
 gi|184192238|gb|ACC70203.1| histone family protein DNA-binding protein [Burkholderia phymatum
          STM815]
          Length = 90

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+++  +S+  + R +  +   +  +  +G ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIDHIAQQADISKAAAGRALDAVIGGVKGTLKKGGSVTLVGFGTFAVGKRTARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   +V  F+    LK  + 
Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALKDALN 90


>gi|15896458|ref|NP_349807.1| DNA binding protein HU [Clostridium acetobutylicum ATCC 824]
 gi|15026283|gb|AAK81147.1|AE007817_1 DNA binding protein HU [Clostridium acetobutylicum ATCC 824]
 gi|325510616|gb|ADZ22252.1| DNA binding protein HU [Clostridium acetobutylicum EA 2018]
          Length = 91

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ SIS++  L++KD+   +      + ++  + E +++  F TF  +++  R G
Sbjct: 1  MNKAELITSISEKSKLTKKDAEVALKAFIESVEETLEKHEKVQLVGFGTFETRERAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN ++ +E+ I    V VFKA    K+R+  
Sbjct: 61 RNPRSKEEIVIPASTVPVFKAGKEFKERVNK 91


>gi|78358253|ref|YP_389702.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
 gi|78220658|gb|ABB40007.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
          Length = 91

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 58/90 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LVK++++++ LS+ ++   V T F+ + ++ V G+ ++I  F +F VK+    VG
Sbjct: 1  MNKSELVKTLAEDYNLSQDEAVAVVNTFFDSVREALVAGDRVEIRGFGSFKVKEYKGYVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   VK+ P+R+ VF+A   +K+ + 
Sbjct: 61 RNPKTGDSVKVSPKRLPVFRAGKEMKELVN 90


>gi|329847169|ref|ZP_08262197.1| integration host factor, beta subunit [Asticcacaulis biprosthecum
          C19]
 gi|328842232|gb|EGF91801.1| integration host factor, beta subunit [Asticcacaulis biprosthecum
          C19]
          Length = 99

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ ++ E   L++KD  R V  +   +  +  +G  +++  F    V+ + +R 
Sbjct: 1  MLKSELIERLASEYPHLTQKDVERAVNLILESMISTLEKGGRVELRGFGALSVRSRPARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T + V +  + V  FK+   L++R+ 
Sbjct: 61 GRNPRTGEAVNVPAKHVPFFKSGKELRERLN 91


>gi|294668835|ref|ZP_06733928.1| DNA-binding protein HU-beta [Neisseria elongata subsp.
          glycolytica ATCC 29315]
 gi|291309352|gb|EFE50595.1| DNA-binding protein HU-beta [Neisseria elongata subsp.
          glycolytica ATCC 29315]
          Length = 89

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++++++E  +S+  + + +  + N I ++  +G+ + +  F +F+V ++  R G
Sbjct: 1  MNKSELIEAMAQEADISKAAAAKALDGMVNAITEALKKGDTVTLVGFGSFYVGERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I   +   F+A   LK  +
Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKSLKDAL 89


>gi|119386494|ref|YP_917549.1| integration host factor subunit beta [Paracoccus denitrificans
          PD1222]
 gi|166918557|sp|A1B8K9|IHFB_PARDP RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|119377089|gb|ABL71853.1| integration host factor, beta subunit [Paracoccus denitrificans
          PD1222]
          Length = 95

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ IS+E   L ++D  R V T+F EI D+  RG+ +++  F  F VK++ +R 
Sbjct: 1  MIRSELIQKISEENPHLFQRDVERIVNTVFEEIIDAMARGDRVELRGFGAFSVKKRDARQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V +D + V  FK   +L++R+  
Sbjct: 61 GRNPRTGETVSVDEKHVPFFKTGKLLRERLNG 92


>gi|310815217|ref|YP_003963181.1| integration host factor subunit beta [Ketogulonicigenium vulgare
          Y25]
 gi|308753952|gb|ADO41881.1| integration host factor subunit beta [Ketogulonicigenium vulgare
          Y25]
          Length = 93

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L  +D    V T+F+EI ++  +G  +++  F  F VK + SR 
Sbjct: 1  MIRSELIQKIADENPHLYHRDVENIVNTIFDEITEALAKGNRVELRGFGAFSVKHRDSRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T   V ++ + V  FK   +L+ R+  
Sbjct: 61 GRNPRTGDPVDVEEKSVPFFKTGKLLRDRLNG 92


>gi|212633423|ref|YP_002309948.1| histone-like DNA-binding protein [Shewanella piezotolerans WP3]
 gi|212554907|gb|ACJ27361.1| Histone-like bacterial DNA-binding protein [Shewanella
          piezotolerans WP3]
          Length = 90

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  +++   L++ ++ R + +    + ++   GE I I  F +F   ++ +R G
Sbjct: 1  MNKTELVAKMAESAELTKAEAARALKSFEETVAEAMKNGEKISIVGFGSFETSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I    V  FKA   LK  + 
Sbjct: 61 RNPQTGKEIQIPAATVPKFKAGKTLKDSVN 90


>gi|85374549|ref|YP_458611.1| integration host factor subunit alpha [Erythrobacter litoralis
          HTCC2594]
 gi|123099506|sp|Q2N927|IHFA_ERYLH RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|84787632|gb|ABC63814.1| integration host factor alpha-subunit [Erythrobacter litoralis
          HTCC2594]
          Length = 100

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/99 (40%), Positives = 64/99 (64%), Gaps = 3/99 (3%)

Query: 1  MSK---TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          MS+   T+TR+DL ++I+++ G SR +S   V  +   +C +  +GE +KIS F +F ++
Sbjct: 1  MSRSVGTLTRADLAEAINRKMGFSRAESLDMVEAILEHMCGALRKGENVKISGFGSFVLR 60

Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           K  R+GRN +T  EV I PRRV+ F+AS +L++RI   
Sbjct: 61 DKKERIGRNPKTGVEVPITPRRVMTFRASQLLRERIAKG 99


>gi|71906916|ref|YP_284503.1| integration host factor, beta subunit [Dechloromonas aromatica
          RCB]
 gi|123733294|sp|Q47GJ8|IHFB_DECAR RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|71846537|gb|AAZ46033.1| Integration host factor, beta subunit [Dechloromonas aromatica
          RCB]
          Length = 94

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 55/94 (58%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  +++ F  L  KD+   V  + + + ++ VRG+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIAQLAERFPQLVAKDADFAVKMILDAMSEALVRGDRIEIRGFGSFALNYRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN ++ ++V +  + V  FKA   L++R+   +
Sbjct: 61 GRNPKSGEKVSVPAKWVPHFKAGKELRERVDQAI 94


>gi|330959797|gb|EGH60057.1| putative DNA-binding protein HU [Pseudomonas syringae pv.
          maculicola str. ES4326]
          Length = 90

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + + V +++++ GL++ D+ R V  +   I D+  +G+A+    F  F VKQ   R G
Sbjct: 1  MNKGEFVDAVAEKAGLTKADTQRAVDAVLETITDTLRKGDAVSFVGFGNFSVKQTAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T   + I   +   F A   LK  + 
Sbjct: 61 RNPSTGASITIAAAKKPHFAAGKSLKDALA 90


>gi|15676627|ref|NP_273771.1| integration host factor, alpha subunit [Neisseria meningitidis
          MC58]
 gi|121634526|ref|YP_974771.1| putative integration host factor alpha-subunit [Neisseria
          meningitidis FAM18]
 gi|161869670|ref|YP_001598837.1| integration host factor subunit alpha [Neisseria meningitidis
          053442]
 gi|218767850|ref|YP_002342362.1| integration host factor subunit alpha [Neisseria meningitidis
          Z2491]
 gi|254804610|ref|YP_003082831.1| integration host factor alpha-subunit [Neisseria meningitidis
          alpha14]
 gi|304387969|ref|ZP_07370141.1| integration host factor [Neisseria meningitidis ATCC 13091]
 gi|54037413|sp|P64393|IHFA_NEIMB RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|54041368|sp|P64392|IHFA_NEIMA RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|166918511|sp|A1KSZ1|IHFA_NEIMF RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|189044703|sp|A9M383|IHFA_NEIM0 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|7225956|gb|AAF41142.1| integration host factor, alpha subunit [Neisseria meningitidis
          MC58]
 gi|120866232|emb|CAM09972.1| putative integration host factor alpha-subunit [Neisseria
          meningitidis FAM18]
 gi|121051858|emb|CAM08164.1| putative integration host factor alpha-subunit [Neisseria
          meningitidis Z2491]
 gi|161595223|gb|ABX72883.1| integration host factor alpha-subunit [Neisseria meningitidis
          053442]
 gi|254668152|emb|CBA04795.1| integration host factor alpha-subunit [Neisseria meningitidis
          alpha14]
 gi|254669798|emb|CBA04109.1| integration host factor alpha-subunit [Neisseria meningitidis
          alpha153]
 gi|261392903|emb|CAX50484.1| integration host factor alpha-subunit (IHF-alpha) [Neisseria
          meningitidis 8013]
 gi|304337968|gb|EFM04106.1| integration host factor [Neisseria meningitidis ATCC 13091]
 gi|308388919|gb|ADO31239.1| putative integration host factor alpha-subunit [Neisseria
          meningitidis alpha710]
 gi|316983711|gb|EFV62692.1| integration host factor, alpha subunit [Neisseria meningitidis
          H44/76]
 gi|319410097|emb|CBY90433.1| integration host factor alpha-subunit (IHF-alpha) [Neisseria
          meningitidis WUE 2594]
 gi|325127847|gb|EGC50754.1| integration host factor, alpha subunit [Neisseria meningitidis
          N1568]
 gi|325129888|gb|EGC52691.1| integration host factor, alpha subunit [Neisseria meningitidis
          OX99.30304]
 gi|325131817|gb|EGC54517.1| integration host factor, alpha subunit [Neisseria meningitidis
          M6190]
 gi|325133756|gb|EGC56412.1| integration host factor, alpha subunit [Neisseria meningitidis
          M13399]
 gi|325136047|gb|EGC58657.1| integration host factor, alpha subunit [Neisseria meningitidis
          M0579]
 gi|325137867|gb|EGC60442.1| integration host factor, alpha subunit [Neisseria meningitidis
          ES14902]
 gi|325140115|gb|EGC62644.1| integration host factor, alpha subunit [Neisseria meningitidis
          CU385]
 gi|325144067|gb|EGC66375.1| integration host factor, alpha subunit [Neisseria meningitidis
          M01-240013]
 gi|325197949|gb|ADY93405.1| integration host factor, alpha subunit [Neisseria meningitidis
          G2136]
 gi|325200586|gb|ADY96041.1| integration host factor, alpha subunit [Neisseria meningitidis
          H44/76]
 gi|325202474|gb|ADY97928.1| integration host factor, alpha subunit [Neisseria meningitidis
          M01-240149]
 gi|325203816|gb|ADY99269.1| integration host factor, alpha subunit [Neisseria meningitidis
          M01-240355]
 gi|325206428|gb|ADZ01881.1| integration host factor, alpha subunit [Neisseria meningitidis
          M04-240196]
 gi|325207774|gb|ADZ03226.1| integration host factor, alpha subunit [Neisseria meningitidis
          NZ-05/33]
          Length = 100

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 4  TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T+T+++L   +  +   +++ D+   V   F EI  +   GE IKIS F  F ++ K  R
Sbjct: 2  TLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN +T +EV I  RRVV F AS  LK  + 
Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLKSMVE 93


>gi|303231969|ref|ZP_07318677.1| DNA-binding protein HU 1 [Veillonella atypica ACS-049-V-Sch6]
 gi|302513398|gb|EFL55432.1| DNA-binding protein HU 1 [Veillonella atypica ACS-049-V-Sch6]
          Length = 99

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 54/99 (54%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L+ S++++  L++KD+ + V  +F+ + +    G  +++  F TF V+++ +R G
Sbjct: 1   MNKTELIASVAQKTELTKKDAEKAVKAVFDTVAEELAAGGKVQVIGFGTFEVRERAAREG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           RN Q    + I   +   FKA   LK+++      ++  
Sbjct: 61  RNPQNGDTITIKASKSPAFKAGKGLKEQVNAAPAKKRKK 99


>gi|254488430|ref|ZP_05101635.1| integration host factor, beta subunit [Roseobacter sp. GAI101]
 gi|214045299|gb|EEB85937.1| integration host factor, beta subunit [Roseobacter sp. GAI101]
          Length = 94

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+     L ++D  R V T+F EI  +   G+ +++  F  F VK++ SRV
Sbjct: 1  MIRSELIQKIADDNPHLYQRDVERIVNTIFEEITSAMSAGDRVELRGFGAFSVKKRDSRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V ++ + V  FK   +L+ R+  +
Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRLNGN 93


>gi|56695706|ref|YP_166057.1| integration host factor subunit beta [Ruegeria pomeroyi DSS-3]
 gi|81676380|sp|Q5LV98|IHFB_SILPO RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|56677443|gb|AAV94109.1| integration host factor, beta subunit [Ruegeria pomeroyi DSS-3]
          Length = 94

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L ++D  R V T+F E+ D+  RG+ +++  F  F VK++ +R+
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMARGDRVELRGFGAFSVKKRDARI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T   V ++ + V  FK   +L+ R+  
Sbjct: 61 GRNPRTGDTVHVEEKHVPFFKTGKLLRDRLNG 92


>gi|225626692|ref|ZP_03784731.1| integration host factor, beta subunit [Brucella ceti str. Cudo]
 gi|306842560|ref|ZP_07475211.1| integration host factor, beta subunit [Brucella sp. BO2]
 gi|225618349|gb|EEH15392.1| integration host factor, beta subunit [Brucella ceti str. Cudo]
 gi|306287416|gb|EFM58896.1| integration host factor, beta subunit [Brucella sp. BO2]
          Length = 117

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 1/97 (1%)

Query: 2   SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           SK + +S+LV+ I+ +   L ++D    V  +F+EI ++   G  +++  F  F VK + 
Sbjct: 21  SKAVIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRP 80

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           +R GRN +T + V ++ + V  FK    L+ R+   +
Sbjct: 81  ARSGRNPRTGETVDVEEKWVPFFKTGKELRDRLNGAV 117


>gi|146344069|ref|YP_001201925.1| putative DNA-binding protein HU [Pseudomonas fluorescens SBW25]
 gi|146187881|emb|CAM96210.1| putative DNA-binding protein Hu [Pseudomonas fluorescens SBW25]
          Length = 92

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+ V +++++ GL++ D+ R V  +   I D+  +G+A+    F  F VKQ   R G
Sbjct: 3  LNKSEFVDAVAEKSGLTKADTQRAVDAVLETITDTLRKGDAVSFVGFGNFSVKQTAERQG 62

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T   + I   +   F A   LK  I 
Sbjct: 63 RNPSTGAPITIAAAKKPHFAAGKSLKDAIA 92


>gi|157963543|ref|YP_001503577.1| histone family protein DNA-binding protein [Shewanella pealeana
          ATCC 700345]
 gi|157848543|gb|ABV89042.1| histone family protein DNA-binding protein [Shewanella pealeana
          ATCC 700345]
          Length = 90

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  +++   L++ ++ R + +    + ++   G+ I I  F +F   Q+ +R G
Sbjct: 1  MNKTELVAKMAESAELTKAEAARALKSFEETVAEAMKNGDKISIVGFGSFETTQRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I    V  FKA   LK  + 
Sbjct: 61 RNPQTGKEIQIPAATVPKFKAGKTLKDSVN 90


>gi|90406951|ref|ZP_01215142.1| integration host factor alpha subunit [Psychromonas sp. CNPT3]
 gi|90311993|gb|EAS40087.1| integration host factor alpha subunit [Psychromonas sp. CNPT3]
          Length = 102

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/95 (36%), Positives = 58/95 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++   +S   GLS++++  FV + F EI  +   GEA+KIS F  F +K KG R 
Sbjct: 2  ALTKAEISIHLSDTIGLSKREAKEFVESFFEEIKATLESGEAVKISGFGGFELKDKGERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +++ I  RRVV F+A   LK+ +  ++ 
Sbjct: 62 GRNPKTGEDIPIAARRVVTFRAGQKLKELVETNLP 96


>gi|197284610|ref|YP_002150482.1| integration host factor subunit beta [Proteus mirabilis HI4320]
 gi|227356793|ref|ZP_03841178.1| integration host factor beta-subunit [Proteus mirabilis ATCC
          29906]
 gi|226709798|sp|B4ET28|IHFB_PROMH RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|194682097|emb|CAR41673.1| integration host factor beta-subunit [Proteus mirabilis HI4320]
 gi|227163083|gb|EEI48018.1| integration host factor beta-subunit [Proteus mirabilis ATCC
          29906]
          Length = 95

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++  +  LS K     V  + + + D+   GE I++  F +F +  +  R 
Sbjct: 1  MTKSELIERLAGLQSHLSAKTVEEAVKEMLDHMADTLADGERIEVRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R+ 
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91


>gi|126701120|ref|YP_001090017.1| DNA-binding protein HU [Clostridium difficile 630]
 gi|254977121|ref|ZP_05273593.1| DNA-binding protein HU [Clostridium difficile QCD-66c26]
 gi|255094450|ref|ZP_05323928.1| DNA-binding protein HU [Clostridium difficile CIP 107932]
 gi|255102706|ref|ZP_05331683.1| DNA-binding protein HU [Clostridium difficile QCD-63q42]
 gi|255308527|ref|ZP_05352698.1| DNA-binding protein HU [Clostridium difficile ATCC 43255]
 gi|255316201|ref|ZP_05357784.1| DNA-binding protein HU [Clostridium difficile QCD-76w55]
 gi|255518863|ref|ZP_05386539.1| DNA-binding protein HU [Clostridium difficile QCD-97b34]
 gi|255652042|ref|ZP_05398944.1| DNA-binding protein HU [Clostridium difficile QCD-37x79]
 gi|255657453|ref|ZP_05402862.1| DNA-binding protein HU [Clostridium difficile QCD-23m63]
 gi|260685016|ref|YP_003216301.1| DNA-binding protein HU [Clostridium difficile CD196]
 gi|260688674|ref|YP_003219808.1| DNA-binding protein HU [Clostridium difficile R20291]
 gi|296449048|ref|ZP_06890838.1| DNA-binding protein HU [Clostridium difficile NAP08]
 gi|296879871|ref|ZP_06903844.1| DNA-binding protein HU [Clostridium difficile NAP07]
 gi|115252557|emb|CAJ70400.1| Non-specific DNA-binding protein HBsu; signal recognition
          particle-like (SRP) component [Clostridium difficile]
 gi|260211179|emb|CBA66647.1| DNA-binding protein HU [Clostridium difficile CD196]
 gi|260214691|emb|CBE07338.1| DNA-binding protein HU [Clostridium difficile R20291]
 gi|296262141|gb|EFH08946.1| DNA-binding protein HU [Clostridium difficile NAP08]
 gi|296429160|gb|EFH15034.1| DNA-binding protein HU [Clostridium difficile NAP07]
          Length = 92

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  ++++ GL++K++   +    + + D+ V  E +++  F TF  +++ +R G
Sbjct: 1  MNKAELVSKMAEKSGLTKKEAEAALNAFMSSVQDALVNNEKVQLVGFGTFETRERAARQG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95
          RN +  ++ + I   +  VFKA   LK  I  
Sbjct: 61 RNPRDPEQVIDIPASKAPVFKAGKGLKDIING 92


>gi|312143872|ref|YP_003995318.1| histone family protein DNA-binding protein [Halanaerobium sp.
          'sapolanicus']
 gi|311904523|gb|ADQ14964.1| histone family protein DNA-binding protein [Halanaerobium sp.
          'sapolanicus']
          Length = 99

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 56/97 (57%), Gaps = 8/97 (8%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--------EAIKISSFATFHV 56
          +T+++L+ ++++  G+++KD+   +  + + I +             + +++  F TF V
Sbjct: 1  MTKNELIDAVAENTGITKKDTGEVINNMIDTIMNHLRAEAKKPEDDRDNVQLIGFGTFEV 60

Query: 57 KQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          + + +R GRN QTN+E++I  R+V VF++    K+ +
Sbjct: 61 RDRSARKGRNPQTNEEIQIPARKVPVFRSGKSFKETV 97


>gi|71278799|ref|YP_269056.1| integration host factor subunit beta [Colwellia psychrerythraea
          34H]
 gi|123761027|sp|Q482G2|IHFB_COLP3 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|71144539|gb|AAZ25012.1| integration host factor, beta subunit [Colwellia psychrerythraea
          34H]
          Length = 95

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ +   LS K+  + +  +   +  S  +GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIEKLADKLSHLSAKEVEKSIKEILELMAQSLSKGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T + V++  + V  FK    L++R+ 
Sbjct: 61 GRNPKTGESVELSGKYVPHFKPGKELRERVN 91


>gi|317152780|ref|YP_004120828.1| histone family protein DNA-binding protein [Desulfovibrio
          aespoeensis Aspo-2]
 gi|316943031|gb|ADU62082.1| histone family protein DNA-binding protein [Desulfovibrio
          aespoeensis Aspo-2]
          Length = 90

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  I+++ G S+  +   +  + + I      G  + ++ F TF V ++ +R G
Sbjct: 1  MTKAELVAKIAEKNGTSKAQAEASMNAILDVIQGELAAGNKLTLTGFGTFSVSERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E+KI   +V  FK   +LK+ + 
Sbjct: 61 RNPRTGKEIKIPACKVAQFKPGKVLKEAVK 90


>gi|319898983|ref|YP_004159076.1| integration host factor alpha subunit [Bartonella clarridgeiae 73]
 gi|319402947|emb|CBI76498.1| integration host factor alpha subunit [Bartonella clarridgeiae 73]
          Length = 103

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/100 (52%), Positives = 72/100 (72%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           SKT+TR+DL  ++ ++ GLS  +S   V  + NEIC+S V+GE +K+SSFATF V+ K  
Sbjct: 3   SKTVTRADLAGAVCRKVGLSHTESADLVELVLNEICNSLVKGEMVKLSSFATFQVRNKSE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           R+GRN +T  E  I PRRVV FKA+++LKKRI+D  R +K
Sbjct: 63  RIGRNPKTGVEASIPPRRVVTFKAANVLKKRILDTHRAKK 102


>gi|118497645|ref|YP_898695.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          novicida U112]
 gi|208779447|ref|ZP_03246793.1| DNA-binding protein HU-beta [Francisella novicida FTG]
 gi|254373011|ref|ZP_04988500.1| hypothetical protein FTCG_00584 [Francisella tularensis subsp.
          novicida GA99-3549]
 gi|118423551|gb|ABK89941.1| DNA-binding protein HU-beta [Francisella novicida U112]
 gi|151570738|gb|EDN36392.1| hypothetical protein FTCG_00584 [Francisella novicida GA99-3549]
 gi|208745247|gb|EDZ91545.1| DNA-binding protein HU-beta [Francisella novicida FTG]
 gi|332678353|gb|AEE87482.1| DNA-binding protein HU-beta [Francisella cf. novicida Fx1]
          Length = 90

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV +I+KE  ++++ ++  +      +  +   G+++ +  F TF VK++  R G
Sbjct: 1  MNKSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSPREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + +KI   +V  FKA   LK  + 
Sbjct: 61 RNPKTGETIKIPASKVPSFKAGKGLKDAVK 90


>gi|62195080|ref|YP_220427.1| hypothetical protein p49879_2p18 [Leptospirillum ferrooxidans]
 gi|61105596|gb|AAX38515.1| ORF98 [Leptospirillum ferrooxidans]
          Length = 98

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV S+S    LS+KD    +      I  S  +GE + +  F TF   +K +R G
Sbjct: 1  MNKTELVASVSDSSNLSKKDVQAVLDGFLAAIEHSLKKGEKVALVGFGTFETVKKEARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + ++I  R    F A   L+  I
Sbjct: 61 RNPRTGEALEIPARTSPKFSAGKSLRDAI 89


>gi|146306886|ref|YP_001187351.1| integration host factor subunit beta [Pseudomonas mendocina ymp]
 gi|166975881|sp|A4XTF3|IHFB_PSEMY RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|145575087|gb|ABP84619.1| integration host factor, beta subunit [Pseudomonas mendocina ymp]
          Length = 95

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I    G LS KD    + T+  ++  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERIVTHQGQLSSKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T Q V++D + V  FK    L+ R+ +D
Sbjct: 61 GRNPKTGQSVRLDGKFVPHFKPGKELRDRVNED 93


>gi|84623708|ref|YP_451080.1| integration host factor subunit beta [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|166712377|ref|ZP_02243584.1| integration host factor subunit beta [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|188576639|ref|YP_001913568.1| integration host factor subunit beta [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|123739120|sp|Q2P3S1|IHFB_XANOM RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|226709819|sp|B2SLH4|IHFB_XANOP RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|84367648|dbj|BAE68806.1| integration host factor beta subunit [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188521091|gb|ACD59036.1| integration host factor, beta subunit [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 103

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 1/103 (0%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L++ +++    L   D    V +L   +  +   G+ I+I  F +F +  +  R+
Sbjct: 1   MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN +T + V +  + V  FK    L++R+   +     +  D
Sbjct: 61  GRNPKTGESVALPGKHVPHFKPGKELRERVSSVVPVDMSDTTD 103


>gi|88859272|ref|ZP_01133912.1| putative integration host factor (iHF), beta subunit,
          site-specific recombination [Pseudoalteromonas tunicata
          D2]
 gi|88818289|gb|EAR28104.1| putative integration host factor (iHF), beta subunit,
          site-specific recombination [Pseudoalteromonas tunicata
          D2]
          Length = 96

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++++   LS KD    V  +  ++ DS    + I+I  F +F +  +  RV
Sbjct: 1  MTKSELIEQLAEQHPQLSAKDVENSVKEILEQMADSLSESQRIEIRGFGSFSLHFRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T   V++  + V  FK    L+ R+ + +  
Sbjct: 61 GRNPKTGDTVELLGKYVPHFKPGKELRDRVNESLNN 96


>gi|119897364|ref|YP_932577.1| integration host factor subunit beta [Azoarcus sp. BH72]
 gi|166918539|sp|A1K4D5|IHFB_AZOSB RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|119669777|emb|CAL93690.1| probable integration host factor, beta-subunit [Azoarcus sp.
          BH72]
          Length = 94

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  ++  F  L  KD+   V  + + + D+  RG+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIAQLAARFPQLVAKDADYAVKMILDAMSDALARGDRIEIRGFGSFALNYRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V +  + V  FKA   L++R+
Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKELRERV 90


>gi|146279885|ref|YP_001170043.1| integration host factor subunit beta [Rhodobacter sphaeroides
          ATCC 17025]
 gi|145558126|gb|ABP72738.1| hypothetical protein Rsph17025_3883 [Rhodobacter sphaeroides ATCC
          17025]
          Length = 93

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L+++   R V T+F EI ++  RG+ +++  F  F VK + +RV
Sbjct: 1  MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALARGDRVELRGFGAFSVKSRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T + V+++ ++V  FK   +L+ R+ 
Sbjct: 61 GRNPRTGEAVEVEDKKVPFFKTGKLLRDRLN 91


>gi|325294223|ref|YP_004280737.1| histone family protein DNA-binding protein [Desulfurobacterium
          thermolithotrophum DSM 11699]
 gi|325064671|gb|ADY72678.1| histone family protein DNA-binding protein [Desulfurobacterium
          thermolithotrophum DSM 11699]
          Length = 93

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 53/88 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+SDLV +I+++ G+ +KD+   +    + + ++  +GE ++I  F TF +K++  RV 
Sbjct: 1  MTKSDLVAAIAEKAGIRKKDAEAALNGFIDVVTEALAKGEKVEIRGFGTFLMKERAPRVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN +T ++V++  +    FK    LK+ 
Sbjct: 61 RNPRTGEKVEVPAKLSPAFKPGKDLKEA 88


>gi|239814882|ref|YP_002943792.1| histone family protein DNA-binding protein [Variovorax paradoxus
           S110]
 gi|239801459|gb|ACS18526.1| histone family protein DNA-binding protein [Variovorax paradoxus
           S110]
          Length = 123

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 57/103 (55%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +  +T++ L   + ++ GL++++S   V   F+ I +S + G  +KIS F  F ++ K  
Sbjct: 13  TPALTKAHLADLLFEQIGLNKRESKDMVEAFFDLIANSLIEGTDVKISGFGNFQIRVKAP 72

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           R GRN +T + + I  RRV  F AS+ LK++I   +     ++
Sbjct: 73  RPGRNPRTGEAIPIGERRVATFHASAKLKEQIHGSIEQSGTSE 115


>gi|255066467|ref|ZP_05318322.1| integration host factor, alpha subunit [Neisseria sicca ATCC
          29256]
 gi|261365588|ref|ZP_05978471.1| integration host factor, alpha subunit [Neisseria mucosa ATCC
          25996]
 gi|261377866|ref|ZP_05982439.1| integration host factor, alpha subunit [Neisseria cinerea ATCC
          14685]
 gi|261400410|ref|ZP_05986535.1| integration host factor, alpha subunit [Neisseria lactamica ATCC
          23970]
 gi|296314669|ref|ZP_06864610.1| integration host factor, alpha subunit [Neisseria polysaccharea
          ATCC 43768]
 gi|298369375|ref|ZP_06980693.1| integration host factor, alpha subunit [Neisseria sp. oral taxon
          014 str. F0314]
 gi|313668794|ref|YP_004049078.1| integration host factor alpha-subunit [Neisseria lactamica
          ST-640]
 gi|255049347|gb|EET44811.1| integration host factor, alpha subunit [Neisseria sicca ATCC
          29256]
 gi|269145715|gb|EEZ72133.1| integration host factor, alpha subunit [Neisseria cinerea ATCC
          14685]
 gi|269209855|gb|EEZ76310.1| integration host factor, alpha subunit [Neisseria lactamica ATCC
          23970]
 gi|288565913|gb|EFC87473.1| integration host factor, alpha subunit [Neisseria mucosa ATCC
          25996]
 gi|296838496|gb|EFH22434.1| integration host factor, alpha subunit [Neisseria polysaccharea
          ATCC 43768]
 gi|298283378|gb|EFI24865.1| integration host factor, alpha subunit [Neisseria sp. oral taxon
          014 str. F0314]
 gi|309378771|emb|CBX22597.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313006256|emb|CBN87718.1| putative integration host factor alpha-subunit [Neisseria
          lactamica 020-06]
          Length = 100

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 4  TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T+T+++L   +  +   +++ D+   V   F EI  +  RGE IKIS F  F ++ K  R
Sbjct: 2  TLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLARGEEIKISGFGNFQLRDKPQR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN +T +EV I  RRVV F AS  LK  + 
Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLKGMVE 93


>gi|33861877|ref|NP_893438.1| histone-like DNA-binding protein [Prochlorococcus marinus subsp.
          pastoris str. CCMP1986]
 gi|78779803|ref|YP_397915.1| histone-like DNA-binding protein [Prochlorococcus marinus str.
          MIT 9312]
 gi|123966715|ref|YP_001011796.1| histone-like DNA-binding protein [Prochlorococcus marinus str.
          MIT 9515]
 gi|33640245|emb|CAE19780.1| Bacterial histone-like DNA-binding protein [Prochlorococcus
          marinus subsp. pastoris str. CCMP1986]
 gi|78713302|gb|ABB50479.1| bacterial nucleoid protein Hbs [Prochlorococcus marinus str. MIT
          9312]
 gi|123201081|gb|ABM72689.1| Bacterial histone-like DNA-binding protein [Prochlorococcus
          marinus str. MIT 9515]
          Length = 91

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ D +  V      I DS V G+ + I  F +F  + + +R G
Sbjct: 1  MNKADLVNLVAARTELTKTDVSLVVDAAIETIVDSVVEGKKVSILGFGSFEPRDRSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T +++ I  +RV  F A  + K R+  
Sbjct: 61 LNPKTGEKIAIPAKRVPTFSAGKLFKDRVQG 91


>gi|330502875|ref|YP_004379744.1| integration host factor subunit beta [Pseudomonas mendocina
          NK-01]
 gi|328917161|gb|AEB57992.1| integration host factor subunit beta [Pseudomonas mendocina
          NK-01]
          Length = 94

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I    G LS KD    + T+  ++  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERIVTHQGQLSSKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T Q V++D + V  FK    L+ R+ +D
Sbjct: 61 GRNPKTGQSVRLDGKFVPHFKPGKELRDRVNED 93


>gi|189424947|ref|YP_001952124.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
 gi|189421206|gb|ACD95604.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
          Length = 93

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/92 (41%), Positives = 57/92 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I ++ GLS+K+S   V  +F  + ++   GE IKI+ F  F VKQK  R G
Sbjct: 1  MTKADIVERIHQKIGLSKKESAEMVEMVFGIMKNTLESGEKIKIAGFGNFVVKQKADRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN QT   + I  RR++ FK S +LK  I D+
Sbjct: 61 RNPQTGDAITISARRILTFKPSQVLKSGINDE 92


>gi|319786988|ref|YP_004146463.1| integration host factor subunit beta [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465500|gb|ADV27232.1| integration host factor, beta subunit [Pseudoxanthomonas suwonensis
           11-1]
          Length = 103

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 1/102 (0%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L++ +++    L  +D    V +L   +  S   GE I+I  F +F +  +  R+
Sbjct: 1   MTKSELIEILARRQSHLKAEDVDLAVKSLLEMMAGSLASGERIEIRGFGSFSLHYRPPRI 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           GRN +T + V +  + V  FKA   L++++ D +      +D
Sbjct: 61  GRNPKTGESVALPGKHVPHFKAGKELREKVSDVVPAPSEPQD 102


>gi|99080043|ref|YP_612197.1| integration host factor subunit beta [Ruegeria sp. TM1040]
 gi|259415365|ref|ZP_05739286.1| integration host factor, beta subunit [Silicibacter sp.
          TrichCH4B]
 gi|122984465|sp|Q1GK81|IHFB_SILST RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|99036323|gb|ABF62935.1| integration host factor beta subunit [Ruegeria sp. TM1040]
 gi|259348595|gb|EEW60357.1| integration host factor, beta subunit [Silicibacter sp.
          TrichCH4B]
          Length = 95

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L ++D  R V T+F E+ ++  RG+ +++  F  F VK++ +RV
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTNAMSRGDRVELRGFGAFSVKKRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V ++ + V  FK   +L+ R+  
Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRLNG 92


>gi|218768639|ref|YP_002343151.1| DNA-binding protein HU-beta [Neisseria meningitidis Z2491]
 gi|304386918|ref|ZP_07369179.1| DNA-binding protein HU-beta [Neisseria meningitidis ATCC 13091]
 gi|14194646|sp|Q9JR30|DBHC_NEIMA RecName: Full=DNA-binding protein HU-beta 2
 gi|6900359|emb|CAB71971.1| putative DNA-binding protein [Neisseria meningitidis]
 gi|121052647|emb|CAM08987.1| DNA-binding protein HU-beta [Neisseria meningitidis Z2491]
 gi|304339023|gb|EFM05116.1| DNA-binding protein HU-beta [Neisseria meningitidis ATCC 13091]
 gi|319410872|emb|CBY91264.1| DNA-binding protein HU-B [Neisseria meningitidis WUE 2594]
          Length = 91

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I+ E  LS++ +  FV    + +      G  + +  F TFH  Q   R G
Sbjct: 1  MNKSELIQAIADEAELSKRAAAEFVNAFVSVVTQELKDGNDVTLVGFGTFHAAQSAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + + I  R+   F++   LK  +  
Sbjct: 61 RNPKTGEPLTIAARKTPKFRSGKALKDAVNG 91


>gi|91792020|ref|YP_561671.1| histone-like DNA-binding protein [Shewanella denitrificans OS217]
 gi|91714022|gb|ABE53948.1| histone-like DNA-binding protein [Shewanella denitrificans OS217]
          Length = 90

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  I++   L++ ++ R + +    + ++   G+ I I  F +F    + +R G
Sbjct: 1  MNKSELIAKIAENADLTKAEAGRALKSFETAVTEAMKNGDKISIVGFGSFETTSRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I    V  FKA   LK  + 
Sbjct: 61 RNPQTGKEIQIAAATVPKFKAGKTLKDSVN 90


>gi|167841225|ref|ZP_02467909.1| integration host factor subunit beta [Burkholderia thailandensis
           MSMB43]
          Length = 107

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 2/106 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + D+  +G  I+I  F +F + ++ +RV
Sbjct: 1   MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
           GRN ++ ++V++  +RV  FK    L++R+ D   G     D+   
Sbjct: 61  GRNPKSGEKVQVPEKRVPHFKPGKELRERV-DGRAGEPLKNDEPED 105


>gi|78222629|ref|YP_384376.1| histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
 gi|78193884|gb|ABB31651.1| Histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
          Length = 91

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/90 (41%), Positives = 55/90 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I ++ G S+K+S   V  +F  I ++   GE IKI+ F  F VK+K  R G
Sbjct: 1  MTKADIVEQIYEKVGFSKKESAELVERVFGLIKETLENGEKIKIAGFGNFVVKEKADRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E+ I  RR++ FK S +LK  I 
Sbjct: 61 RNPQTGDEIIISARRILTFKPSQVLKSSIN 90


>gi|117925417|ref|YP_866034.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
 gi|117609173|gb|ABK44628.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
          Length = 91

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S L++ I+++  LS++++   V+ +  EI  +  RGE +++  F  F V+ + SR  
Sbjct: 1  MTKSQLIQMIAEQHNLSKQNAELAVSLVLGEIVKAMERGERVELRGFGVFEVRHRQSRQA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   V +  +RV  FKA   +++R+
Sbjct: 61 RNPKTGDSVAVSEKRVPFFKAGKEMRERV 89


>gi|226330705|ref|ZP_03806223.1| hypothetical protein PROPEN_04625 [Proteus penneri ATCC 35198]
 gi|225201500|gb|EEG83854.1| hypothetical protein PROPEN_04625 [Proteus penneri ATCC 35198]
          Length = 95

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++  +  LS K     V  + + + D+   GE I++  F +F +  +  R 
Sbjct: 1  MTKSELIERLAGLQSHLSAKTVEEAVKEMLDHMADTLADGERIEVRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V ++ + V  FK    L+ R+ 
Sbjct: 61 GRNPKTGDKVDLEGKYVPHFKPGKELRDRVN 91


>gi|327405558|ref|YP_004346396.1| histone family protein DNA-binding protein [Fluviicola taffensis
          DSM 16823]
 gi|327321066|gb|AEA45558.1| histone family protein DNA-binding protein [Fluviicola taffensis
          DSM 16823]
          Length = 90

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+ E GLS+ D+ + +         +  +G+ I +  F +F V ++ +R G
Sbjct: 1  MNKAELIDAIASEAGLSKADAKKALDAFVGATAGALKKGDRISLVGFGSFSVSKREARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I  + VV FKA + L   + 
Sbjct: 61 RNPQTGKEIAIAAKNVVRFKAGAELSGAVN 90


>gi|163793688|ref|ZP_02187662.1| Bacterial nucleoid DNA-binding protein [alpha proteobacterium
          BAL199]
 gi|159180799|gb|EDP65316.1| Bacterial nucleoid DNA-binding protein [alpha proteobacterium
          BAL199]
          Length = 92

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 58/91 (63%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  +++    L ++D  R V+T+F+EI ++  RG+ +++  F  F VKQ+ +RV
Sbjct: 1  MTKSELIARLAEANPHLFQRDVERIVSTIFDEISNALARGDRVELRGFGAFSVKQREARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T + VK+  + V  FK   +L+ ++ 
Sbjct: 61 GRNPRTGEAVKVSSKFVPFFKTGKLLRDKLN 91


>gi|113953503|ref|YP_731390.1| DNA-binding protein HU [Synechococcus sp. CC9311]
 gi|113880854|gb|ABI45812.1| DNA-binding protein HU [Synechococcus sp. CC9311]
          Length = 91

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 49/91 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ D +  V    + I DS V G+ + I  F +F  +++ +R G
Sbjct: 1  MNKADLVNLVAARTELTKTDVSLVVDAAIDTIIDSVVEGKKVSILGFGSFEPRERSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T +++KI  +RV  F A  + K R+  
Sbjct: 61 LNPKTGEKIKIPAKRVPAFTAGKMFKDRVQG 91


>gi|291279581|ref|YP_003496416.1| integration host factor, subunit alpha [Deferribacter
          desulfuricans SSM1]
 gi|290754283|dbj|BAI80660.1| integration host factor, alpha subunit [Deferribacter
          desulfuricans SSM1]
          Length = 91

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/90 (37%), Positives = 57/90 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I  + G+++KD    V  +F  + +  + G ++K+S F  F VK +G RVG
Sbjct: 1  MTKADIVEKIYNQLGITKKDIANVVDMVFTTMREEILSGNSVKVSGFGNFEVKVRGRRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +EV I PR VV FK S++ K+ + 
Sbjct: 61 RNPKTGEEVIIPPRYVVSFKPSNLFKEEVN 90


>gi|289665788|ref|ZP_06487369.1| integration host factor subunit beta [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 103

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 1/103 (0%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L++ +++    L   D    V +L   +  +   G+ I+I  F +F +  +  R+
Sbjct: 1   MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN +T + V +  + V  FK    L++R+   +     +  D
Sbjct: 61  GRNPKTGESVALPGKHVPHFKPGKELRERVSSVVPVDMSDATD 103


>gi|254432410|ref|ZP_05046113.1| DNA-binding protein HU [Cyanobium sp. PCC 7001]
 gi|197626863|gb|EDY39422.1| DNA-binding protein HU [Cyanobium sp. PCC 7001]
          Length = 91

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 49/91 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ D ++ V      I DS V G+ + I  F +F  +++ +R G
Sbjct: 1  MNKADLVNLVAARTELTKTDVSQVVDAAIETIIDSVVEGKKVSILGFGSFEPRERSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T +++KI  +RV  F A  + K R+  
Sbjct: 61 LNPKTGEKIKIPAKRVPAFTAGKMFKDRVQG 91


>gi|83313103|ref|YP_423367.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1]
 gi|82947944|dbj|BAE52808.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magneticum AMB-1]
          Length = 99

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 58/93 (62%), Gaps = 1/93 (1%)

Query: 3  KTITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          K++T+S+L+  +++    L ++D  R VTT+F+EI  +  RG+ +++  F  F VK++  
Sbjct: 2  KSMTKSELIARLAEANPHLYQRDVERIVTTIFDEIASALARGDRVELRGFGAFSVKKRDP 61

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RVGRN +T + V +D + V  FK    L++++ 
Sbjct: 62 RVGRNPRTGETVSVDGKAVPFFKTGKQLREKLN 94


>gi|14194876|sp|Q9RNZ5|IHFA_ZYMMO RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
          Length = 100

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 60/94 (63%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           T+TR+D+   +  E GLSR DS + +  +   I D+  +GE +KIS F +F ++ K  R
Sbjct: 6  PTLTRADITDMLYHEVGLSRADSAKMIEQMLGHITDALKKGENVKISGFGSFILRDKNER 65

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          VGRN +T  EV I PRRV+ F+AS ++++RI+  
Sbjct: 66 VGRNPKTGIEVPIAPRRVLTFRASQLMRQRIIKG 99


>gi|318042379|ref|ZP_07974335.1| DNA-binding protein HU [Synechococcus sp. CB0101]
          Length = 91

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ D  + V    + I DS V G+ + I  F +F  +++ +R G
Sbjct: 1  MNKADLVNLVAARTELTKTDVAQVVDAAIDTIIDSVVEGKKVSILGFGSFEPRERSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T  ++KI  +RV  F A  + K R+  
Sbjct: 61 LNPKTGDKIKIPAKRVPAFTAGKLFKDRVQG 91


>gi|294670490|ref|ZP_06735370.1| hypothetical protein NEIELOOT_02208 [Neisseria elongata subsp.
          glycolytica ATCC 29315]
 gi|291307769|gb|EFE49012.1| hypothetical protein NEIELOOT_02208 [Neisseria elongata subsp.
          glycolytica ATCC 29315]
          Length = 102

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 4  TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T+T+++L   + ++   +++ D+   V   F EI  +  RGE IKIS F  F ++ K  R
Sbjct: 2  TLTKAELADILVEKVSSVTKNDAKEIVELFFEEIRTTLERGEEIKISGFGNFQLRDKPQR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN +T +EV I  RRVV F AS  LK  + 
Sbjct: 62 PGRNPKTGEEVPISARRVVTFHASQKLKGMVE 93


>gi|34498009|ref|NP_902224.1| DNA-binding protein HU-beta [Chromobacterium violaceum ATCC
          12472]
 gi|34103864|gb|AAQ60224.1| DNA-binding protein hu-beta [Chromobacterium violaceum ATCC
          12472]
          Length = 89

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+ E  +S+  + + +  +   +  +  +G+ + +  F TF+V ++  R G
Sbjct: 1  MNKSELIDAIAAEADISKAAAAKALDGMVAAVTSALKKGDTVTLVGFGTFYVGERAERSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   +KI   R   F+A   LK  +
Sbjct: 61 RNPKTGATIKIPAARSPKFRAGKALKDAL 89


>gi|332759234|gb|EGJ89543.1| integration host factor, alpha subunit [Shigella flexneri K-671]
          Length = 92

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 47/85 (55%)

Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQ 71
          + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R GRN +T +
Sbjct: 3  EYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGE 62

Query: 72 EVKIDPRRVVVFKASSILKKRIMDD 96
          ++ I  RRVV F+    LK R+ + 
Sbjct: 63 DIPITARRVVTFRPGQKLKSRVENA 87


>gi|262197073|ref|YP_003268282.1| histone family protein DNA-binding protein [Haliangium ochraceum
           DSM 14365]
 gi|262080420|gb|ACY16389.1| histone family protein DNA-binding protein [Haliangium ochraceum
           DSM 14365]
          Length = 106

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 52/101 (51%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           T+SDL++ +S    L +  +   V+ +F  + ++   GE I+I  F +F V+   +  GR
Sbjct: 4   TKSDLIEQLSSAAKLPKAKAELVVSVMFECMAEALQHGERIEIRGFGSFEVRDYKAYEGR 63

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           N +T + V++D +R+  FK    L++RI +          D
Sbjct: 64  NPRTGEPVQVDAKRLPFFKIGKELRERINNGGAATDSAASD 104


>gi|170692398|ref|ZP_02883561.1| histone family protein DNA-binding protein [Burkholderia graminis
          C4D1M]
 gi|323526044|ref|YP_004228197.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1001]
 gi|170142828|gb|EDT10993.1| histone family protein DNA-binding protein [Burkholderia graminis
          C4D1M]
 gi|323383046|gb|ADX55137.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1001]
          Length = 90

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+++  +S+  + R +  +   +  +  +G ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIDHIAQQAEISKAAAGRALDAVIGGVKGTLKKGGSVTLVGFGTFAVGKRTARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   +V  F+    LK  + 
Sbjct: 61 RNPRTGDAIKIKAAKVPKFRPGKALKDALN 90


>gi|126731019|ref|ZP_01746827.1| integration host factor beta subunit [Sagittula stellata E-37]
 gi|126708321|gb|EBA07379.1| integration host factor beta subunit [Sagittula stellata E-37]
          Length = 93

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L ++D  R V T+F EI ++  RG+ +++  F  F VK++ +R+
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTIFEEITNAMARGDRVELRGFGAFSVKKRDARI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T   V+++ + V  FK   +L+ R+  
Sbjct: 61 GRNPRTGDSVEVEEKHVPFFKTGKLLRDRLNG 92


>gi|145596669|ref|YP_001160966.1| histone family protein DNA-binding protein [Salinispora tropica
          CNB-440]
 gi|145306006|gb|ABP56588.1| histone family protein DNA-binding protein [Salinispora tropica
          CNB-440]
          Length = 91

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  LV++++ + GL++  +   +  +   I D+   GE + I  F TF VK + +R G
Sbjct: 1  MNKRTLVETVAAKAGLTKTAAESALDAMVEAISDALADGEKVAIPGFGTFEVKDRPARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + ++I  R+   FK ++ LK  +
Sbjct: 61 RNPRTGETMEIAARKAPGFKPATALKNEV 89


>gi|114570072|ref|YP_756752.1| integration host factor subunit alpha [Maricaulis maris MCS10]
 gi|122315995|sp|Q0APH3|IHFA_MARMM RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|114340534|gb|ABI65814.1| integration host factor, alpha subunit [Maricaulis maris MCS10]
          Length = 101

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/98 (44%), Positives = 68/98 (69%), Gaps = 1/98 (1%)

Query: 1  MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          MS KT+TR+DL +S+ +E GLSR++S   V ++   + D+   G+++K+SSF +F ++ K
Sbjct: 1  MSDKTLTRADLAESVYREVGLSRQESADLVQSVLAMVSDNLAAGQSVKLSSFGSFLLRDK 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
            RVGRN +T  EV ID RRV+VFK S +LK+R+   +
Sbjct: 61 RGRVGRNPKTGVEVPIDARRVLVFKPSQVLKERVDSAL 98


>gi|33240850|ref|NP_875792.1| histone-like DNA-binding protein [Prochlorococcus marinus subsp.
          marinus str. CCMP1375]
 gi|33238379|gb|AAQ00445.1| Bacterial nucleoid DNA-binding protein [Prochlorococcus marinus
          subsp. marinus str. CCMP1375]
          Length = 91

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ D    V      I DS V G+ + I  F +F  + + +R G
Sbjct: 1  MNKADLVNLVAARTELTKTDVALVVDAAIETIVDSVVEGKKVSILGFGSFEPRDRSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T +++KI  +RV  F A  + K R+  
Sbjct: 61 LNPKTGEKIKIPAKRVPAFTAGKLFKDRVQG 91


>gi|77360369|ref|YP_339944.1| integration host factor (IHF), beta subunit, site-specific
          recombination [Pseudoalteromonas haloplanktis TAC125]
 gi|123589521|sp|Q3IL99|IHFB_PSEHT RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|76875280|emb|CAI86501.1| putative integration host factor (iHF), beta subunit,
          site-specific recombination [Pseudoalteromonas
          haloplanktis TAC125]
          Length = 95

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+++++++   +  KD    V  +  ++  S    + I+I  F +F +  +  R 
Sbjct: 1  MTKSELIETLAQQHAHVPVKDVENAVKEILEQMAGSLSSSDRIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T + V++D + V  FK    L+ R+ + + 
Sbjct: 61 GRNPKTGETVELDGKHVPHFKPGKELRDRVNESIA 95


>gi|299144441|ref|ZP_07037521.1| DNA-binding protein HU [Peptoniphilus sp. oral taxon 386 str.
          F0131]
 gi|298518926|gb|EFI42665.1| DNA-binding protein HU [Peptoniphilus sp. oral taxon 386 str.
          F0131]
          Length = 92

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV SI+++  L++KD+   +      + ++   GE +++  F TF V+++ +R G
Sbjct: 1  MNKSELVASIAQKSNLTKKDAEMALNGFLATVEEALAGGEKVQLVGFGTFEVRERKAREG 60

Query: 65 RNLQ-TNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +   + +KI   +  VF+A   LK+ +  
Sbjct: 61 RNPRDPKEIIKIPASKAPVFRAGKALKEVVNK 92


>gi|300312982|ref|YP_003777074.1| integration host factor subunit beta [Herbaspirillum seropedicae
           SmR1]
 gi|300075767|gb|ADJ65166.1| integration host factor beta-subunit (IHF-beta) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 101

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 59/102 (57%), Gaps = 2/102 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+  +++ +  L  KD+   V T+ + + D+   G+ I+I  F +F + ++  R+
Sbjct: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRI 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           GRN ++  +V +  +RV  FK    L++R+ D M G+   +D
Sbjct: 61  GRNPKSGDKVMVPEKRVPHFKPGKELRERV-DAMVGQPIRED 101


>gi|15616661|ref|NP_239873.1| DNA-binding protein HU-alpha [Buchnera aphidicola str. APS
          (Acyrthosiphon pisum)]
 gi|219681974|ref|YP_002468358.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. Tuc7
          (Acyrthosiphon pisum)]
 gi|11131509|sp|P57144|DBH_BUCAI RecName: Full=DNA-binding protein HU
 gi|25294374|pir||G84933 DNA-binding protein hu-alpha [imported] - Buchnera sp.  (strain
          APS)
 gi|10038724|dbj|BAB12759.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. APS
          (Acyrthosiphon pisum)]
 gi|219621707|gb|ACL29863.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. Tuc7
          (Acyrthosiphon pisum)]
 gi|311085779|gb|ADP65861.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. LL01
          (Acyrthosiphon pisum)]
 gi|311086354|gb|ADP66435.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. TLW03
          (Acyrthosiphon pisum)]
 gi|311086932|gb|ADP67012.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. JF99
          (Acyrthosiphon pisum)]
 gi|311087520|gb|ADP67599.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. JF98
          (Acyrthosiphon pisum)]
          Length = 92

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  ISK+  LS+  +   + T  + I DS  +GE+++I  F TF V  + SR G
Sbjct: 1  MNKTQLINVISKKSNLSKIQAKLTLETTLSTIIDSLKKGESVQIVGFGTFKVNLRSSRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E++I   +V  F +   LK  I  
Sbjct: 61 RNPQTGKEIQIPATKVPSFTSGKTLKNAIKQ 91


>gi|107022126|ref|YP_620453.1| integration host factor subunit beta [Burkholderia cenocepacia AU
           1054]
 gi|116689071|ref|YP_834694.1| integration host factor subunit beta [Burkholderia cenocepacia
           HI2424]
 gi|170732359|ref|YP_001764306.1| integration host factor subunit beta [Burkholderia cenocepacia
           MC0-3]
 gi|123072317|sp|Q1BY25|IHFB_BURCA RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|226709773|sp|B1JXS2|IHFB_BURCC RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|226709774|sp|A0K5M4|IHFB_BURCH RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|105892315|gb|ABF75480.1| integration host factor, beta subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647160|gb|ABK07801.1| integration host factor, beta subunit [Burkholderia cenocepacia
           HI2424]
 gi|169815601|gb|ACA90184.1| integration host factor, beta subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 107

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + D+  +G  I+I  F +F + ++ +RV
Sbjct: 1   MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALAKGHRIEIRGFGSFGLNRRPARV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           GRN ++ ++V++  + V  FK    L++R+ D   G     DD 
Sbjct: 61  GRNPKSGEKVQVPEKFVPHFKPGKELRERV-DGRAGEPLKADDP 103


>gi|124267432|ref|YP_001021436.1| putative integration host factor subunit beta (ihf-beta) protein
           [Methylibium petroleiphilum PM1]
 gi|124260207|gb|ABM95201.1| putative integration host factor beta-subunit (ihf-beta) protein
           [Methylibium petroleiphilum PM1]
          Length = 111

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 1/105 (0%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +TRSDLV  + +    L+ +D+   V T+ + + D+  RG  I+I  F +F + ++  R+
Sbjct: 1   MTRSDLVALLGERFSQLTHRDTEFAVKTILDAMSDALARGHRIEIRGFGSFSINRRPPRM 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT 108
           GRN ++ ++V I  + V  FK    L++ +       +       
Sbjct: 61  GRNPRSGEQVVIPEKLVPHFKPGKALREAVDAHTAALEAEAHQTA 105


>gi|330720848|gb|EGG99044.1| Integration host factor alpha subunit [gamma proteobacterium
          IMCC2047]
          Length = 100

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 52/92 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++ + + +  E GL+++++   V   F E+  S +  + +K+S F  F ++ K  R 
Sbjct: 3  ALTKAAIAEKLFDELGLNKREAKEIVEMFFGEVRQSLINNDQVKLSGFGNFGLRDKKERP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +++ I  RRVV F+    LK ++ D
Sbjct: 63 GRNPKTGEDIPISARRVVTFRPGQKLKAKVED 94


>gi|319763571|ref|YP_004127508.1| histone family protein DNA-binding protein [Alicycliphilus
          denitrificans BC]
 gi|330824228|ref|YP_004387531.1| histone family protein DNA-binding protein [Alicycliphilus
          denitrificans K601]
 gi|317118132|gb|ADV00621.1| histone family protein DNA-binding protein [Alicycliphilus
          denitrificans BC]
 gi|329309600|gb|AEB84015.1| histone family protein DNA-binding protein [Alicycliphilus
          denitrificans K601]
          Length = 90

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+ +  +S+  +TR + +  + +  +  +G  + +  F TF V ++ +R G
Sbjct: 1  MNKSELIEHIASQADISKAAATRALESTIDAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   +V  F+    LK  + 
Sbjct: 61 RNPRTGATIKIKAAKVPKFRPGKALKDALN 90


>gi|59801191|ref|YP_207903.1| DbhA [Neisseria gonorrhoeae FA 1090]
 gi|194098662|ref|YP_002001724.1| DbhA [Neisseria gonorrhoeae NCCP11945]
 gi|239998975|ref|ZP_04718899.1| DbhA [Neisseria gonorrhoeae 35/02]
 gi|240014114|ref|ZP_04721027.1| DbhA [Neisseria gonorrhoeae DGI18]
 gi|240016549|ref|ZP_04723089.1| DbhA [Neisseria gonorrhoeae FA6140]
 gi|240080673|ref|ZP_04725216.1| DbhA [Neisseria gonorrhoeae FA19]
 gi|240112961|ref|ZP_04727451.1| DbhA [Neisseria gonorrhoeae MS11]
 gi|240115715|ref|ZP_04729777.1| DbhA [Neisseria gonorrhoeae PID18]
 gi|240118011|ref|ZP_04732073.1| DbhA [Neisseria gonorrhoeae PID1]
 gi|240121676|ref|ZP_04734638.1| DbhA [Neisseria gonorrhoeae PID24-1]
 gi|240123565|ref|ZP_04736521.1| DbhA [Neisseria gonorrhoeae PID332]
 gi|240125747|ref|ZP_04738633.1| DbhA [Neisseria gonorrhoeae SK-92-679]
 gi|240128269|ref|ZP_04740930.1| DbhA [Neisseria gonorrhoeae SK-93-1035]
 gi|254493764|ref|ZP_05106935.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae 1291]
 gi|260440472|ref|ZP_05794288.1| DbhA [Neisseria gonorrhoeae DGI2]
 gi|268594821|ref|ZP_06128988.1| DNA-binding protein [Neisseria gonorrhoeae 35/02]
 gi|268596797|ref|ZP_06130964.1| DNA-binding protein [Neisseria gonorrhoeae FA19]
 gi|268599038|ref|ZP_06133205.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae MS11]
 gi|268601391|ref|ZP_06135558.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID18]
 gi|268603720|ref|ZP_06137887.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID1]
 gi|268682191|ref|ZP_06149053.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID332]
 gi|268684342|ref|ZP_06151204.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae SK-92-679]
 gi|268686663|ref|ZP_06153525.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae SK-93-1035]
 gi|291043776|ref|ZP_06569492.1| DNA-binding protein [Neisseria gonorrhoeae DGI2]
 gi|293399057|ref|ZP_06643222.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae F62]
 gi|59718086|gb|AAW89491.1| putative DNA-binding protein Hu [Neisseria gonorrhoeae FA 1090]
 gi|193933952|gb|ACF29776.1| DbhA [Neisseria gonorrhoeae NCCP11945]
 gi|226512804|gb|EEH62149.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae 1291]
 gi|268548210|gb|EEZ43628.1| DNA-binding protein [Neisseria gonorrhoeae 35/02]
 gi|268550585|gb|EEZ45604.1| DNA-binding protein [Neisseria gonorrhoeae FA19]
 gi|268583169|gb|EEZ47845.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae MS11]
 gi|268585522|gb|EEZ50198.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID18]
 gi|268587851|gb|EEZ52527.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID1]
 gi|268622475|gb|EEZ54875.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID332]
 gi|268624626|gb|EEZ57026.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae SK-92-679]
 gi|268626947|gb|EEZ59347.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae SK-93-1035]
 gi|291012239|gb|EFE04228.1| DNA-binding protein [Neisseria gonorrhoeae DGI2]
 gi|291610471|gb|EFF39581.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae F62]
          Length = 89

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I++E  +S+  + + +    N + ++  +G+ + +  F TF+V ++  R G
Sbjct: 1  MNKSELIEAIAQEADISKAAAQKALDATTNAVTNALKQGDTVTLVGFGTFYVGERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I   + + F+A   LK  +
Sbjct: 61 RNPKTGEPLTIAAAKTLKFRAGKALKDAL 89


>gi|78223040|ref|YP_384787.1| histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
 gi|78194295|gb|ABB32062.1| Histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
          Length = 93

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 56/92 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++++ E GL+ K +   V+ +F+ + D+ VR E I+I  F +F VK   +  G
Sbjct: 1  MNKSELIEALAAEKGLTYKKAEEIVSIVFDAMTDAMVRNERIEIRGFGSFVVKDYKAYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T   +++ P+++  FK    LK+R+ + 
Sbjct: 61 RNPKTGDPIEVKPKKLPFFKVGKELKERVDNG 92


>gi|330815898|ref|YP_004359603.1| Integration host factor, beta subunit [Burkholderia gladioli BSR3]
 gi|327368291|gb|AEA59647.1| Integration host factor, beta subunit [Burkholderia gladioli BSR3]
          Length = 106

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 2/103 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + D+  +G  I+I  F +F + ++ +RV
Sbjct: 1   MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN ++ ++V++  + V  FK    L++R+ D   G     D 
Sbjct: 61  GRNPKSGEKVQVPEKYVPHFKPGKELRERV-DGRAGEPLKNDS 102


>gi|312795456|ref|YP_004028378.1| integration host factor beta-subunit [Burkholderia rhizoxinica HKI
           454]
 gi|312167231|emb|CBW74234.1| Integration host factor beta-subunit [Burkholderia rhizoxinica HKI
           454]
          Length = 109

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 2/106 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V  + + + D+   G  I+I  F +F + ++ +RV
Sbjct: 1   MTKSELVAQLALRFPQLVLKDADFAVKAMLDAMSDALANGHRIEIRGFGSFALNRRPARV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
           GRN ++ + V++  + V  FK    L++R+ D   G+    D V +
Sbjct: 61  GRNPKSGERVQVPEKWVPHFKPGKELRERV-DGKAGQPMKADSVEA 105


>gi|294102069|ref|YP_003553927.1| histone family protein DNA-binding protein [Aminobacterium
          colombiense DSM 12261]
 gi|293617049|gb|ADE57203.1| histone family protein DNA-binding protein [Aminobacterium
          colombiense DSM 12261]
          Length = 91

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV +++K  GL+++++   V  +   I +S  +G+ +++  F TF V+++ +R G
Sbjct: 1  MTKTDLVNAVAKATGLNKREAGAAVGAVLQAIENSLAKGDKVQLVGFGTFEVRERAAREG 60

Query: 65 RNLQ-TNQEVKIDPRRVVVFKASSILKKRIM 94
          RN Q   + +KI  ++V VF+    LK+++ 
Sbjct: 61 RNPQDPKKVIKIPAKKVPVFRPGKALKEKVE 91


>gi|209521455|ref|ZP_03270163.1| histone family protein DNA-binding protein [Burkholderia sp.
          H160]
 gi|295676520|ref|YP_003605044.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1002]
 gi|209498111|gb|EDZ98258.1| histone family protein DNA-binding protein [Burkholderia sp.
          H160]
 gi|295436363|gb|ADG15533.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1002]
          Length = 90

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+++  +S+  + R +  +   +  +  +G ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIDHIAQQADISKAAAGRALDAVIAGVKSTLKKGGSVTLVGFGTFAVGKRTARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   +V  F+    LK  + 
Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALKDALN 90


>gi|213649077|ref|ZP_03379130.1| integration host factor subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 92

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 12  KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQ 71
           + +  + GLS++D+   V   F EI  +   GE +K+S F  F ++ K  R GRN +T +
Sbjct: 3   EYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGE 62

Query: 72  EVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           ++ I  RRVV F+    LK R+ +     +
Sbjct: 63  DIPITARRVVTFRPGQKLKSRVENASPKEE 92


>gi|126464029|ref|YP_001045142.1| integration host factor subunit beta [Rhodobacter sphaeroides
          ATCC 17029]
 gi|221369597|ref|YP_002520693.1| integration host factor subunit beta [Rhodobacter sphaeroides
          KD131]
 gi|332561262|ref|ZP_08415580.1| integration host factor subunit beta [Rhodobacter sphaeroides
          WS8N]
 gi|166975885|sp|A3PPV4|IHFB_RHOS1 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|254803538|sp|B9KU92|IHFB_RHOSK RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|126105840|gb|ABN78370.1| integration host factor, beta subunit [Rhodobacter sphaeroides
          ATCC 17029]
 gi|221162649|gb|ACM03620.1| Integration host factor subunit beta [Rhodobacter sphaeroides
          KD131]
 gi|332275060|gb|EGJ20376.1| integration host factor subunit beta [Rhodobacter sphaeroides
          WS8N]
          Length = 93

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L+++   R V T+F EI ++  RG+ +++  F  F VK + +RV
Sbjct: 1  MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALARGDRVELRGFGAFSVKARDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T + V+++ ++V  FK   +L+ R+ 
Sbjct: 61 GRNPRTGEAVEVEDKKVPFFKTGKLLRDRLN 91


>gi|78357794|ref|YP_389243.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
 gi|78220199|gb|ABB39548.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
          Length = 91

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++LV+ I+ + G+ S+  +   +      I ++   G+++  + F +F V ++ +R 
Sbjct: 1  MTKAELVQKIAAKAGMNSKTQAESALDATIAVITEALSAGDSVTFTGFGSFKVAERAARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I   +VV F     LK  + 
Sbjct: 61 GRNPRTGEEMTIPASKVVKFTPGKALKDAVK 91


>gi|328676006|gb|AEB28681.1| DNA-binding protein HU-beta [Francisella cf. novicida 3523]
          Length = 90

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV +I+KE  ++++ ++  +      +  +   G+++ +  F TF VK++  R G
Sbjct: 1  MNKSELVSAIAKEADVTKEVASNTLDATIAAVTKALKSGDSVTLVGFGTFQVKERSPREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + +KI   +V  FKA   LK  + 
Sbjct: 61 RNPKTGETIKIPASKVPSFKAGKGLKDAVK 90


>gi|292897978|ref|YP_003537347.1| histone like DNA-binding protein HU-alpha [Erwinia amylovora ATCC
          49946]
 gi|291197826|emb|CBJ44921.1| histone like DNA-binding protein HU-alpha [Erwinia amylovora ATCC
          49946]
          Length = 90

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R  
Sbjct: 1  MNKTQLIDVIADKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90


>gi|217970426|ref|YP_002355660.1| histone family protein DNA-binding protein [Thauera sp. MZ1T]
 gi|217507753|gb|ACK54764.1| histone family protein DNA-binding protein [Thauera sp. MZ1T]
          Length = 90

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV SI+++ G+++ D+ R +      + ++  + E + +  F +F+V ++ +R G
Sbjct: 1  MNKQELVASIAEKAGMTKADAARALDATVAAVTEALRQDETVTLVGFGSFYVGERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + +KI   +V  F+A   LK  + 
Sbjct: 61 RNPRTGKNIKIKAAKVPKFRAGKGLKDSVN 90


>gi|313667657|ref|YP_004047941.1| dna-binding protein HU-beta 2 [Neisseria lactamica ST-640]
 gi|313005119|emb|CBN86551.1| dna-binding protein HU-beta 2 [Neisseria lactamica 020-06]
          Length = 91

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I+ E  LS+ D+  FV    + +  +   G+ + +  F +FH  Q   R G
Sbjct: 1  MNKSELIQAIADEAELSKLDAAAFVDAFVSVVTQAMKDGKDVTLVGFGSFHTAQSAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I  R+   F+A   LK  + 
Sbjct: 61 RNPKTGEPLIIAARKTPKFRAGKALKDAVN 90


>gi|308049648|ref|YP_003913214.1| integration host factor, beta subunit [Ferrimonas balearica DSM
          9799]
 gi|307631838|gb|ADN76140.1| integration host factor, beta subunit [Ferrimonas balearica DSM
          9799]
          Length = 94

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ K+  LS K+    +  +  ++  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLASKQSHLSGKEVEGAIKEMLEQMASTLEHGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T + V++  + V  FK    L++R+ D +
Sbjct: 61 GRNPKTGESVELTGKFVPHFKPGKELRERVNDSL 94


>gi|206900402|ref|YP_002251223.1| non-specific DNA-binding protein [Dictyoglomus thermophilum
          H-6-12]
 gi|217967896|ref|YP_002353402.1| histone family protein DNA-binding protein [Dictyoglomus turgidum
          DSM 6724]
 gi|206739505|gb|ACI18563.1| non-specific DNA-binding protein [Dictyoglomus thermophilum
          H-6-12]
 gi|217336995|gb|ACK42788.1| histone family protein DNA-binding protein [Dictyoglomus turgidum
          DSM 6724]
          Length = 91

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 54/91 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ +  ++++  +++K++T+ V  +   I ++  +G+ ++   F TF V+++ +R G
Sbjct: 1  MKKAEFIAKVAEKAKITKKEATKVVNAVLETITEALSKGDTVQFVGFGTFSVRKRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T Q +KI   +V VF+    L++ +  
Sbjct: 61 RNPRTQQPIKIPATKVPVFRPGKELREAVKK 91


>gi|49474169|ref|YP_032211.1| integration host factor subunit alpha [Bartonella quintana str.
           Toulouse]
 gi|81647096|sp|Q6FZZ9|IHFA_BARQU RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|49239673|emb|CAF26044.1| Integration host factor alpha-subunit [Bartonella quintana str.
           Toulouse]
          Length = 104

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 52/102 (50%), Positives = 72/102 (70%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           SKT+TR+DL   + ++ GLS  +S   V  + NEIC+S VRGEA+K+SSFATF V+ K  
Sbjct: 3   SKTVTRADLASVVCRKVGLSHTESAALVELVLNEICNSLVRGEAVKLSSFATFQVRNKNE 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           R+GRN +T  E  I PRRVV FKA+++LK+RI++  R R+  
Sbjct: 63  RIGRNPKTGVEAPISPRRVVTFKAANVLKQRILNSHRARQKK 104


>gi|325922080|ref|ZP_08183874.1| integration host factor, beta subunit [Xanthomonas gardneri ATCC
           19865]
 gi|325547417|gb|EGD18477.1| integration host factor, beta subunit [Xanthomonas gardneri ATCC
           19865]
          Length = 103

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 5   ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L++ ++ ++  L   D    V +L   +  +   G+ I+I  F +F +  +  R+
Sbjct: 1   MTKSELIEILAQRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN +T + V +  + V  FK    L++R+   +     +  D
Sbjct: 61  GRNPKTGESVALPGKHVPHFKPGKELRERVSSVVPVDLADTAD 103


>gi|39996621|ref|NP_952572.1| integration host factor subunit alpha [Geobacter sulfurreducens
          PCA]
 gi|39983502|gb|AAR34895.1| integration host factor, alpha subunit [Geobacter sulfurreducens
          PCA]
 gi|298505634|gb|ADI84357.1| integration host factor, alpha subunit [Geobacter sulfurreducens
          KN400]
          Length = 91

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/90 (41%), Positives = 55/90 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I ++ G S+K+S   V  +F  I ++  RGE IKI+ F  F VK K  R G
Sbjct: 1  MTKADIVEQIYEKIGFSKKESAELVERVFGLIKETLERGEKIKIAGFGNFVVKDKADRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E+ I  R+++ FK S +LK  I 
Sbjct: 61 RNPQTGDEIIISARKILTFKPSQVLKSSIN 90


>gi|23013445|ref|ZP_00053339.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magnetotacticum MS-1]
          Length = 90

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV +++   GLS+ D+ + V  +F  I  +   G+ +++  F TF V  + +  G
Sbjct: 1  MNKNDLVTAVAGAAGLSKADAAKAVDGVFEAITSALKGGDEVRLVGFGTFAVASRAASEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +++KI   +   FKA   LK  I 
Sbjct: 61 RNPRTGEKIKIPASKQPKFKAGKGLKDGIQ 90


>gi|194476545|ref|YP_002048724.1| DNA binding protein HU [Paulinella chromatophora]
 gi|171191552|gb|ACB42514.1| DNA binding protein HU [Paulinella chromatophora]
          Length = 91

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ D +  V      I DS V G+ + I  F +F  +++ +R G
Sbjct: 1  MNKADLVNLVAARTELTKTDVSLVVDAAIETIIDSVVEGKKVSILGFGSFEPRERSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T +++KI  +RV  F A  + K R+  
Sbjct: 61 LNPKTGEKIKIPAKRVPTFTAGKMFKDRVQG 91


>gi|149919502|ref|ZP_01907982.1| integration host factor, alpha subunit [Plesiocystis pacifica
          SIR-1]
 gi|149819627|gb|EDM79054.1| integration host factor, alpha subunit [Plesiocystis pacifica
          SIR-1]
          Length = 94

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T++D+V  +    G  S+K++   V  +F+ +      GE IKIS F  F V+ K  R 
Sbjct: 1  MTKADIVDKVCDRVGGFSKKEAADLVDQVFDTMKQVLETGEKIKISGFGNFVVRDKKPRP 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN QT  E+ I+ RRV+ FK S++LK  +   
Sbjct: 61 GRNPQTGDEITIEARRVLTFKPSNVLKVALNSG 93


>gi|323489683|ref|ZP_08094910.1| DNA-binding protein HU (DNA-binding protein II) (HB) [Planococcus
          donghaensis MPA1U2]
 gi|323396814|gb|EGA89633.1| DNA-binding protein HU (DNA-binding protein II) (HB) [Planococcus
          donghaensis MPA1U2]
          Length = 90

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV S+++   LSRKD+ + V   F  I D+  +GE +++  F  F V+++ +R G
Sbjct: 1  MNKTELVNSVAEAAELSRKDAAKAVDAAFETIQDALTKGEKVQLIGFGNFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E++I   +V  FK    LK  + 
Sbjct: 61 RNPQTGAEIEIAASKVPAFKPGKALKDAVK 90


>gi|302878720|ref|YP_003847284.1| histone family protein DNA-binding protein [Gallionella
          capsiferriformans ES-2]
 gi|302581509|gb|ADL55520.1| histone family protein DNA-binding protein [Gallionella
          capsiferriformans ES-2]
          Length = 93

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 48/92 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +L+ +++ + G ++ D+ R      + + ++   G+ I +  F +F V+++ +R G
Sbjct: 1  MNRKELIDALATKTGSTKADAARNFAAFIDVVTETLTAGDDISLVGFGSFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN  T  E+KI   +   FK  + LK  + D 
Sbjct: 61 RNPATGAELKIAASKSPAFKPGATLKSAVNDS 92


>gi|289423339|ref|ZP_06425147.1| DNA-binding protein HU [Peptostreptococcus anaerobius 653-L]
 gi|289156270|gb|EFD04927.1| DNA-binding protein HU [Peptostreptococcus anaerobius 653-L]
          Length = 92

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  I+++  L++K+S   +    + + ++ V GE +++  F TF  +++ +R G
Sbjct: 1  MNKAELVAKIAEKSNLTKKESELALNAFMDVVEETLVAGEKVQLVGFGTFETRERAARSG 60

Query: 65 RNLQTN-QEVKIDPRRVVVFKASSILKKRIMD 95
          RN +   + ++I   +  VFKA   LK+ +  
Sbjct: 61 RNPRKPDETIEIPASKAPVFKAGKGLKELVNK 92


>gi|158425340|ref|YP_001526632.1| integration host factor subunit beta [Azorhizobium caulinodans
          ORS 571]
 gi|172048041|sp|A8IN83|IHFB_AZOC5 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|158332229|dbj|BAF89714.1| integration host factor beta subunit [Azorhizobium caulinodans
          ORS 571]
          Length = 94

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 53/93 (56%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  + ++I D+  +G+ +++  F  F VKQ+ +R 
Sbjct: 1  MIKSELVQKIAEANPHLYQRDVENIVNAILDQIVDALAQGDRVELRGFGAFSVKQREART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T ++V +  + V  FK    +++R+   
Sbjct: 61 GRNPRTGKQVDVSSKVVPYFKTGKEMRERLNGA 93


>gi|226943705|ref|YP_002798778.1| integration host factor subunit beta [Azotobacter vinelandii DJ]
 gi|259492033|sp|C1DRR5|IHFB_AZOVD RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226718632|gb|ACO77803.1| integration host factor, beta subunit [Azotobacter vinelandii DJ]
          Length = 92

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I  + G LS KD    + T+  ++  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERIVTQQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T Q V++D + V  FK    L+ R+ +
Sbjct: 61 GRNPKTGQTVRLDGKFVPHFKPGKELRDRVNE 92


>gi|62289129|ref|YP_220922.1| integration host factor subunit beta [Brucella abortus bv. 1 str.
          9-941]
 gi|82699068|ref|YP_413642.1| integration host factor subunit beta [Brucella melitensis biovar
          Abortus 2308]
 gi|189023405|ref|YP_001934173.1| integration host factor subunit beta [Brucella abortus S19]
 gi|254690457|ref|ZP_05153711.1| integration host factor subunit beta [Brucella abortus bv. 6 str.
          870]
 gi|254694946|ref|ZP_05156774.1| integration host factor subunit beta [Brucella abortus bv. 3 str.
          Tulya]
 gi|254696577|ref|ZP_05158405.1| integration host factor subunit beta [Brucella abortus bv. 2 str.
          86/8/59]
 gi|254731490|ref|ZP_05190068.1| integration host factor subunit beta [Brucella abortus bv. 4 str.
          292]
 gi|256258713|ref|ZP_05464249.1| integration host factor subunit beta [Brucella abortus bv. 9 str.
          C68]
 gi|260546427|ref|ZP_05822167.1| integration host factor subunit beta [Brucella abortus NCTC 8038]
 gi|260756009|ref|ZP_05868357.1| integration host factor subunit beta [Brucella abortus bv. 6 str.
          870]
 gi|260759233|ref|ZP_05871581.1| integration host factor subunit beta [Brucella abortus bv. 4 str.
          292]
 gi|260760955|ref|ZP_05873298.1| integration host factor subunit beta [Brucella abortus bv. 2 str.
          86/8/59]
 gi|260885029|ref|ZP_05896643.1| integration host factor subunit beta [Brucella abortus bv. 9 str.
          C68]
 gi|261215285|ref|ZP_05929566.1| integration host factor subunit beta [Brucella abortus bv. 3 str.
          Tulya]
 gi|297247545|ref|ZP_06931263.1| integration host factor, beta subunit [Brucella abortus bv. 5
          str. B3196]
 gi|75505361|sp|Q57FM3|IHFB_BRUAB RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|123768445|sp|Q2YP18|IHFB_BRUA2 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709771|sp|B2S8E6|IHFB_BRUA1 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|62195261|gb|AAX73561.1| IhfB, integration host factor, beta subunit [Brucella abortus bv.
          1 str. 9-941]
 gi|82615169|emb|CAJ10108.1| Histone-like bacterial DNA-binding protein:Integration host
          factor, beta subunit [Brucella melitensis biovar
          Abortus 2308]
 gi|189018977|gb|ACD71699.1| Histone-like bacterial DNA-binding protein [Brucella abortus S19]
 gi|260096534|gb|EEW80410.1| integration host factor subunit beta [Brucella abortus NCTC 8038]
 gi|260669551|gb|EEX56491.1| integration host factor subunit beta [Brucella abortus bv. 4 str.
          292]
 gi|260671387|gb|EEX58208.1| integration host factor subunit beta [Brucella abortus bv. 2 str.
          86/8/59]
 gi|260676117|gb|EEX62938.1| integration host factor subunit beta [Brucella abortus bv. 6 str.
          870]
 gi|260874557|gb|EEX81626.1| integration host factor subunit beta [Brucella abortus bv. 9 str.
          C68]
 gi|260916892|gb|EEX83753.1| integration host factor subunit beta [Brucella abortus bv. 3 str.
          Tulya]
 gi|297174714|gb|EFH34061.1| integration host factor, beta subunit [Brucella abortus bv. 5
          str. B3196]
          Length = 94

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I+ +   L ++D    V  +F+EI ++   G  +++  F  F VK + +R 
Sbjct: 1  MIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T + V ++ + V  FK    L+ R+   +
Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRLNGAV 94


>gi|309378123|emb|CBX23232.1| DNA-binding protein HU-beta [Neisseria lactamica Y92-1009]
          Length = 94

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I++E G+S+  + + +    N + D+  +G+ + +  F TF+V ++  R G
Sbjct: 6  VNKSELIEAIAQEAGISKAAAQKALDATTNAVTDALKKGDTVTLVGFGTFYVGERAERQG 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I   +   F+A   LK  +
Sbjct: 66 RNPKTGEPLTIAAAKTPKFRAGKALKDAL 94


>gi|119896606|ref|YP_931819.1| DNA-binding protein HU [Azoarcus sp. BH72]
 gi|119669019|emb|CAL92932.1| DNA-binding protein HU (DNA-binding protein II) [Azoarcus sp.
          BH72]
          Length = 91

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + + V++++    +SR  + R ++ + + I +   +GE +  + F +F V ++ +R G
Sbjct: 1  MNKGEFVEALADRLDVSRAQADRALSAVLDIISEQLGKGEKVAFTGFGSFEVSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT   + I    V  F A + LK  +  
Sbjct: 61 RNPQTGATIDIAASSVPKFTAGATLKAAVNK 91


>gi|15602493|ref|NP_245565.1| hypothetical protein PM0628 [Pasteurella multocida subsp.
          multocida str. Pm70]
 gi|14194851|sp|Q9CN18|IHFA_PASMU RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|12720902|gb|AAK02712.1| HimA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 98

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 52/92 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ +L  ++ ++  L+++D+   V   F EI  +   GE +K+S F  F ++ K SR 
Sbjct: 2  TLTKVELADNLIEKLHLNKRDAKELVENFFEEIRVALETGEDVKLSGFGNFELRDKSSRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V +  RRVV FK    L+ R+  
Sbjct: 62 GRNPKTGESVPVSARRVVAFKPGQKLRARVEK 93


>gi|59800752|ref|YP_207464.1| IfhA [Neisseria gonorrhoeae FA 1090]
 gi|194098031|ref|YP_002001079.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          NCCP11945]
 gi|239998494|ref|ZP_04718418.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          35/02]
 gi|240013619|ref|ZP_04720532.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          DGI18]
 gi|240016058|ref|ZP_04722598.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          FA6140]
 gi|240080200|ref|ZP_04724743.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          FA19]
 gi|240112413|ref|ZP_04726903.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          MS11]
 gi|240115153|ref|ZP_04729215.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          PID18]
 gi|240117437|ref|ZP_04731499.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          PID1]
 gi|240120689|ref|ZP_04733651.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          PID24-1]
 gi|240122993|ref|ZP_04735949.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          PID332]
 gi|240125245|ref|ZP_04738131.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          SK-92-679]
 gi|240127699|ref|ZP_04740360.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          SK-93-1035]
 gi|254493213|ref|ZP_05106384.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          1291]
 gi|260441029|ref|ZP_05794845.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          DGI2]
 gi|268594353|ref|ZP_06128520.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          35/02]
 gi|268596349|ref|ZP_06130516.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          FA19]
 gi|268598476|ref|ZP_06132643.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          MS11]
 gi|268600829|ref|ZP_06134996.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          PID18]
 gi|268603134|ref|ZP_06137301.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          PID1]
 gi|268681615|ref|ZP_06148477.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          PID332]
 gi|268683843|ref|ZP_06150705.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          SK-92-679]
 gi|268686084|ref|ZP_06152946.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          SK-93-1035]
 gi|291044361|ref|ZP_06570070.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          DGI2]
 gi|293399547|ref|ZP_06643700.1| integration host factor, alpha subunit [Neisseria gonorrhoeae
          F62]
 gi|75507418|sp|Q5F9T5|IHFA_NEIG1 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226709736|sp|B4RJZ4|IHFA_NEIG2 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|59717647|gb|AAW89052.1| integration host factor alpha subunit [Neisseria gonorrhoeae FA
          1090]
 gi|193933321|gb|ACF29145.1| IfhA [Neisseria gonorrhoeae NCCP11945]
 gi|226512253|gb|EEH61598.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          1291]
 gi|268547742|gb|EEZ43160.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          35/02]
 gi|268550137|gb|EEZ45156.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          FA19]
 gi|268582607|gb|EEZ47283.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          MS11]
 gi|268584960|gb|EEZ49636.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          PID18]
 gi|268587265|gb|EEZ51941.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          PID1]
 gi|268621899|gb|EEZ54299.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          PID332]
 gi|268624127|gb|EEZ56527.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          SK-92-679]
 gi|268626368|gb|EEZ58768.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          SK-93-1035]
 gi|291011255|gb|EFE03251.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          DGI2]
 gi|291610116|gb|EFF39238.1| integration host factor, alpha subunit [Neisseria gonorrhoeae
          F62]
 gi|317163772|gb|ADV07313.1| integration host factor subunit alpha [Neisseria gonorrhoeae
          TCDC-NG08107]
          Length = 100

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 4  TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T+T+++L   +  +   +++ D+   V   F EI  +   GE IKIS F  F ++ K  R
Sbjct: 2  TLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN +T +EV I  RRVV F AS  LK  + 
Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLKGMVE 93


>gi|198283163|ref|YP_002219484.1| histone family protein DNA-binding protein [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218666540|ref|YP_002425392.1| DNA-binding protein HU [Acidithiobacillus ferrooxidans ATCC
          23270]
 gi|198247684|gb|ACH83277.1| histone family protein DNA-binding protein [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218518753|gb|ACK79339.1| DNA-binding protein HU [Acidithiobacillus ferrooxidans ATCC
          23270]
          Length = 90

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I++E G++R  +   +  L   + D+   G+ + +  F +F V  + +R G
Sbjct: 1  MNKSELIEKIAEEAGVTRAAAGHTLDALVKVVTDALKAGDQVTLVGFGSFLVSSREARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T  E+ I   R   FKA   L+  + 
Sbjct: 61 RNPATGAEIMIAASRTPKFKAGKALRDAVN 90


>gi|77465590|ref|YP_355093.1| integration host factor subunit beta [Rhodobacter sphaeroides
          2.4.1]
 gi|14194882|sp|Q9X4E2|IHFB_RHOS4 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|4761124|gb|AAD29258.1|AF107093_3 integration host factor beta-subunit [Rhodobacter sphaeroides]
 gi|77390008|gb|ABA81192.1| Integration host factor beta-subunit [Rhodobacter sphaeroides
          2.4.1]
          Length = 93

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L+++   R V T+F EI ++  RG+ +++  F  F VK + +RV
Sbjct: 1  MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALARGDRVELRGFGAFSVKARDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T + V+++ ++V  FK   +L+ R+ 
Sbjct: 61 GRNPRTGEAVEVEDKKVPFFKTGKLLRDRLN 91


>gi|260428004|ref|ZP_05781983.1| integration host factor, beta subunit [Citreicella sp. SE45]
 gi|260422496|gb|EEX15747.1| integration host factor, beta subunit [Citreicella sp. SE45]
          Length = 93

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I++E   L ++D  R V T+F EI ++  RG+ +++  F  F VK++ +R+
Sbjct: 1  MIRSELIQKIAEENPHLYQRDVERIVNTIFEEITNAMARGDRVELRGFGAFSVKKRDARM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T   V+++ + V  FK   +L+ R+  
Sbjct: 61 GRNPRTGDAVEVEEKHVPFFKTGKLLRDRLNG 92


>gi|296112369|ref|YP_003626307.1| integration host factor subunit alpha [Moraxella catarrhalis RH4]
 gi|295920063|gb|ADG60414.1| integration host factor subunit alpha [Moraxella catarrhalis RH4]
 gi|326561877|gb|EGE12212.1| integration host factor subunit alpha [Moraxella catarrhalis
          7169]
 gi|326563312|gb|EGE13579.1| integration host factor subunit alpha [Moraxella catarrhalis
          46P47B1]
 gi|326563427|gb|EGE13692.1| integration host factor subunit alpha [Moraxella catarrhalis
          12P80B1]
 gi|326565966|gb|EGE16127.1| integration host factor subunit alpha [Moraxella catarrhalis
          103P14B1]
 gi|326568900|gb|EGE18969.1| integration host factor subunit alpha [Moraxella catarrhalis BC1]
 gi|326569200|gb|EGE19261.1| integration host factor subunit alpha [Moraxella catarrhalis BC7]
 gi|326571873|gb|EGE21878.1| integration host factor subunit alpha [Moraxella catarrhalis BC8]
 gi|326575385|gb|EGE25310.1| integration host factor subunit alpha [Moraxella catarrhalis
          101P30B1]
 gi|326576526|gb|EGE26434.1| integration host factor subunit alpha [Moraxella catarrhalis
          CO72]
 gi|326577997|gb|EGE27861.1| integration host factor subunit alpha [Moraxella catarrhalis
          O35E]
          Length = 98

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 51/96 (53%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+V  ++    L+R+ + + V   F EI  S  +G  +K+S F  F +K K  R 
Sbjct: 3  ALTKADMVDELTIRLRLTRQQARKLVDGFFEEISQSLAQGHEVKLSGFGNFELKDKKPRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T + V I  RRVV FKA   L+  I     G
Sbjct: 63 GRNPKTGESVPIQARRVVTFKAGQKLRGWIDSQNEG 98


>gi|221067879|ref|ZP_03543984.1| histone family protein DNA-binding protein [Comamonas
          testosteroni KF-1]
 gi|264677812|ref|YP_003277718.1| histone-like DNA-binding protein [Comamonas testosteroni CNB-2]
 gi|299531632|ref|ZP_07045037.1| histone-like DNA-binding protein [Comamonas testosteroni S44]
 gi|220712902|gb|EED68270.1| histone family protein DNA-binding protein [Comamonas
          testosteroni KF-1]
 gi|262208324|gb|ACY32422.1| histone-like DNA-binding protein [Comamonas testosteroni CNB-2]
 gi|298720348|gb|EFI61300.1| histone-like DNA-binding protein [Comamonas testosteroni S44]
          Length = 90

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+    +S+  + R + +  + +  +  +G  + +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIANNADISKAAAARALDSTIDAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   +V  F+    LK  + 
Sbjct: 61 RNPRTGDSIKIKAAKVPKFRPGKALKDALN 90


>gi|83720765|ref|YP_442176.1| integration host factor subunit beta [Burkholderia thailandensis
           E264]
 gi|167581054|ref|ZP_02373928.1| integration host factor subunit beta [Burkholderia thailandensis
           TXDOH]
 gi|167619132|ref|ZP_02387763.1| integration host factor subunit beta [Burkholderia thailandensis
           Bt4]
 gi|257138365|ref|ZP_05586627.1| integration host factor subunit beta [Burkholderia thailandensis
           E264]
 gi|123767673|sp|Q2SY23|IHFB_BURTA RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|83654590|gb|ABC38653.1| integration host factor, beta subunit [Burkholderia thailandensis
           E264]
          Length = 107

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 2/106 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + D+  +G  I+I  F +F + ++ +RV
Sbjct: 1   MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
           GRN ++ ++V++  + V  FK    L++R+ D   G     D+   
Sbjct: 61  GRNPKSGEKVQVPEKHVPHFKPGKELRERV-DGRAGEPLKNDEPED 105


>gi|146280834|ref|YP_001170987.1| HU family DNA-binding protein [Pseudomonas stutzeri A1501]
 gi|145569039|gb|ABP78145.1| DNA-binding protein, HU family [Pseudomonas stutzeri A1501]
          Length = 105

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + + +L  +I+++  LS+  + R +  + +EI ++  R +++ +  F TF  + +G+R G
Sbjct: 16  MRKPELAAAIAEKADLSKDQANRVLNAVLDEITNALNRKDSVTLVGFGTFVQRHRGARTG 75

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           +N QT Q V I     V FK   +LK  + 
Sbjct: 76  KNPQTGQPVTIKASNTVAFKPGKMLKDAVN 105


>gi|15598357|ref|NP_251851.1| integration host factor subunit beta [Pseudomonas aeruginosa
          PAO1]
 gi|107102691|ref|ZP_01366609.1| hypothetical protein PaerPA_01003757 [Pseudomonas aeruginosa
          PACS2]
 gi|116051150|ref|YP_790019.1| integration host factor subunit beta [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|152988540|ref|YP_001347349.1| integration host factor subunit beta [Pseudomonas aeruginosa PA7]
 gi|218890647|ref|YP_002439511.1| integration host factor subunit beta [Pseudomonas aeruginosa
          LESB58]
 gi|254236124|ref|ZP_04929447.1| integration host factor beta subunit [Pseudomonas aeruginosa
          C3719]
 gi|254241850|ref|ZP_04935172.1| integration host factor beta subunit [Pseudomonas aeruginosa
          2192]
 gi|296388355|ref|ZP_06877830.1| integration host factor subunit beta [Pseudomonas aeruginosa
          PAb1]
 gi|313108473|ref|ZP_07794477.1| integration host factor beta subunit [Pseudomonas aeruginosa
          39016]
 gi|2495249|sp|Q51473|IHFB_PSEAE RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|122260285|sp|Q02PW7|IHFB_PSEAB RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|166926151|sp|A6V2R4|IHFB_PSEA7 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709799|sp|B7VAL8|IHFB_PSEA8 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|5565911|gb|AAD45260.1|AF147795_1 integration host factor beta-subunit [Pseudomonas aeruginosa]
 gi|8118236|gb|AAF72950.1|AF236052_1 integration host factor beta-subunit [Pseudomonas aeruginosa]
 gi|9949277|gb|AAG06549.1|AE004740_2 integration host factor beta subunit [Pseudomonas aeruginosa
          PAO1]
 gi|20559752|gb|AAM27536.1|AF498400_2 HimD [Pseudomonas aeruginosa]
 gi|20559775|gb|AAM27554.1|AF498401_2 HimD [Pseudomonas aeruginosa]
 gi|20559792|gb|AAM27569.1|AF498402_2 HimD [Pseudomonas aeruginosa]
 gi|20559808|gb|AAM27583.1|AF498403_2 HimD [Pseudomonas aeruginosa]
 gi|20559837|gb|AAM27609.1|AF498404_2 HimD [Pseudomonas aeruginosa]
 gi|20559852|gb|AAM27623.1|AF498405_2 HimD [Pseudomonas aeruginosa]
 gi|20559866|gb|AAM27636.1|AF498406_2 HimD [Pseudomonas aeruginosa]
 gi|20559871|gb|AAM27640.1|AF498407_2 HimD [Pseudomonas aeruginosa]
 gi|20559886|gb|AAM27654.1|AF498408_2 HimD [Pseudomonas aeruginosa]
 gi|20559907|gb|AAM27674.1|AF498409_2 HimD [Pseudomonas aeruginosa]
 gi|20559919|gb|AAM27685.1|AF498410_2 HimD [Pseudomonas aeruginosa]
 gi|20559942|gb|AAM27705.1|AF498411_2 HimD [Pseudomonas aeruginosa]
 gi|20559962|gb|AAM27720.1|AF498412_2 HimD [Pseudomonas aeruginosa]
 gi|20559986|gb|AAM27740.1|AF498413_2 HimD [Pseudomonas aeruginosa]
 gi|20560009|gb|AAM27760.1|AF498414_2 HimD [Pseudomonas aeruginosa]
 gi|20560047|gb|AAM27793.1|AF498416_2 HimD [Pseudomonas aeruginosa]
 gi|20560068|gb|AAM27813.1|AF498417_2 HimD [Pseudomonas aeruginosa]
 gi|20560086|gb|AAM27828.1|AF498418_2 HimD [Pseudomonas aeruginosa]
 gi|20560109|gb|AAM27848.1|AF498419_2 HimD [Pseudomonas aeruginosa]
 gi|20560136|gb|AAM27868.1|AF498420_2 HimD [Pseudomonas aeruginosa]
 gi|535713|gb|AAA65950.1| integration host factor beta subunit [Pseudomonas aeruginosa]
 gi|6690128|gb|AAF23995.1| Ihf-Beta [Pseudomonas aeruginosa]
 gi|27502127|gb|AAO17408.1| himD/ihfB [Pseudomonas aeruginosa]
 gi|27502131|gb|AAO17411.1| himD/ihfB [Pseudomonas aeruginosa]
 gi|115586371|gb|ABJ12386.1| integration host factor beta subunit [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|126168055|gb|EAZ53566.1| integration host factor beta subunit [Pseudomonas aeruginosa
          C3719]
 gi|126195228|gb|EAZ59291.1| integration host factor beta subunit [Pseudomonas aeruginosa
          2192]
 gi|150963698|gb|ABR85723.1| integration host factor, beta subunit [Pseudomonas aeruginosa
          PA7]
 gi|218770870|emb|CAW26635.1| integration host factor beta subunit [Pseudomonas aeruginosa
          LESB58]
 gi|310880979|gb|EFQ39573.1| integration host factor beta subunit [Pseudomonas aeruginosa
          39016]
          Length = 94

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I    G LS KD    + T+  ++  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERIVTHQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V++D + V  FK    L+ R+ +
Sbjct: 61 GRNPKTGESVRLDGKFVPHFKPGKELRDRVNE 92


>gi|78184156|ref|YP_376591.1| histone-like DNA-binding protein [Synechococcus sp. CC9902]
 gi|78213608|ref|YP_382387.1| nucleoid protein Hbs [Synechococcus sp. CC9605]
 gi|116071206|ref|ZP_01468475.1| Histone-like DNA-binding protein [Synechococcus sp. BL107]
 gi|260435607|ref|ZP_05789577.1| DNA-binding protein HU 1 [Synechococcus sp. WH 8109]
 gi|78168450|gb|ABB25547.1| bacterial nucleoid protein Hbs [Synechococcus sp. CC9902]
 gi|78198067|gb|ABB35832.1| Histone-like DNA-binding protein [Synechococcus sp. CC9605]
 gi|116066611|gb|EAU72368.1| Histone-like DNA-binding protein [Synechococcus sp. BL107]
 gi|260413481|gb|EEX06777.1| DNA-binding protein HU 1 [Synechococcus sp. WH 8109]
          Length = 91

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ D +  V    + I DS V G+ + I  F +F  +++ +R G
Sbjct: 1  MNKADLVNLVAARTELTKTDVSMVVDAAIDTIIDSVVEGKKVSILGFGSFEPRERSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T +++ I  +RV  F A  + K R+  
Sbjct: 61 LNPKTGEKIAIPAKRVPAFTAGKMFKDRVQG 91


>gi|145633212|ref|ZP_01788943.1| translation initiation factor IF-3 [Haemophilus influenzae 3655]
 gi|145634922|ref|ZP_01790629.1| integration host factor alpha-subunit [Haemophilus influenzae
          PittAA]
 gi|229845127|ref|ZP_04465262.1| integration host factor alpha-subunit [Haemophilus influenzae
          6P18H1]
 gi|144986058|gb|EDJ92648.1| translation initiation factor IF-3 [Haemophilus influenzae 3655]
 gi|145267788|gb|EDK07785.1| integration host factor alpha-subunit [Haemophilus influenzae
          PittAA]
 gi|229811963|gb|EEP47657.1| integration host factor alpha-subunit [Haemophilus influenzae
          6P18H1]
          Length = 96

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 53/92 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+ D+++ +S ++ LS++D+   V     EI  S   G+ +K+S F  F ++ K SR 
Sbjct: 3  TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRLSLESGQDVKLSGFGNFELRDKSSRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T   V +  RRVV FK    L+ R+ +
Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARVEN 94


>gi|84515231|ref|ZP_01002593.1| integration host factor beta subunit [Loktanella vestfoldensis
          SKA53]
 gi|84510514|gb|EAQ06969.1| integration host factor beta subunit [Loktanella vestfoldensis
          SKA53]
          Length = 93

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L ++D  + V T+F+ I D+  +G  +++  F  F VK++  R+
Sbjct: 1  MIRSELIQKIADENPHLYQRDVEKIVNTIFDRITDAMAQGNRVELRGFGAFSVKKRDPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V++D + V  FK   +L+ R+  
Sbjct: 61 GRNPRTGEAVEVDEKHVPFFKTGKLLRDRLNG 92


>gi|194336507|ref|YP_002018301.1| histone family protein DNA-binding protein [Pelodictyon
          phaeoclathratiforme BU-1]
 gi|194308984|gb|ACF43684.1| histone family protein DNA-binding protein [Pelodictyon
          phaeoclathratiforme BU-1]
          Length = 102

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 55/98 (56%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M  T T+ DLV  I+   GL++ ++   V +LF  I DS   G+ I+I  F +F+++ K 
Sbjct: 1  MGTTTTKVDLVNVIAHRTGLTKNETESVVNSLFESIIDSLKAGKRIEIRGFGSFNIRHKN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           R  RN +T ++V ++P+ V  FK S   K  + + ++
Sbjct: 61 LRQARNPRTGEKVTVEPKNVPAFKISKEFKLAVSESLK 98


>gi|260574086|ref|ZP_05842091.1| integration host factor, beta subunit [Rhodobacter sp. SW2]
 gi|259023552|gb|EEW26843.1| integration host factor, beta subunit [Rhodobacter sp. SW2]
          Length = 93

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L+++   R V T+F EI ++  +G+ +++  F  F VK + +RV
Sbjct: 1  MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALAKGDRVELRGFGAFSVKARDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T + V+++ ++V  FK   +L+ R+ 
Sbjct: 61 GRNPRTGEAVEVEDKKVPFFKTGKLLRDRLN 91


>gi|33863662|ref|NP_895222.1| histone-like DNA-binding protein [Prochlorococcus marinus str.
          MIT 9313]
 gi|124022281|ref|YP_001016588.1| histone-like DNA-binding protein [Prochlorococcus marinus str.
          MIT 9303]
 gi|33635245|emb|CAE21570.1| Bacterial DNA-binding protein [Prochlorococcus marinus str. MIT
          9313]
 gi|123962567|gb|ABM77323.1| Bacterial histone-like DNA-binding protein [Prochlorococcus
          marinus str. MIT 9303]
          Length = 91

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ D +  V    + I DS V G+ + I  F +F  + + +R G
Sbjct: 1  MNKADLVNLVAARTELTKTDVSLVVDAAIDTIIDSVVEGKKVSILGFGSFEPRDRSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T Q++KI  +RV  F A  + K R+  
Sbjct: 61 LNPKTGQKIKIPAKRVPAFTAGKMFKDRVQG 91


>gi|148549147|ref|YP_001269249.1| integration host factor subunit beta [Pseudomonas putida F1]
 gi|167032377|ref|YP_001667608.1| integration host factor subunit beta [Pseudomonas putida GB-1]
 gi|325276947|ref|ZP_08142631.1| integration host factor subunit beta [Pseudomonas sp. TJI-51]
 gi|166975882|sp|A5W7F5|IHFB_PSEP1 RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|189045040|sp|B0KTY3|IHFB_PSEPG RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|148513205|gb|ABQ80065.1| integration host factor, beta subunit [Pseudomonas putida F1]
 gi|166858865|gb|ABY97272.1| integration host factor, beta subunit [Pseudomonas putida GB-1]
 gi|324097922|gb|EGB96084.1| integration host factor subunit beta [Pseudomonas sp. TJI-51]
          Length = 98

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 5   ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L++ I    GL S KD    + T+  ++      G+ I+I  F +F +  +  RV
Sbjct: 1   MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T Q V ++ + V  FK    L+ R+ ++    
Sbjct: 61  GRNPKTGQSVSLEGKFVPHFKPGKELRDRVNEEDEAE 97


>gi|294851552|ref|ZP_06792225.1| integration host factor [Brucella sp. NVSL 07-0026]
 gi|294820141|gb|EFG37140.1| integration host factor [Brucella sp. NVSL 07-0026]
          Length = 101

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 1/97 (1%)

Query: 2   SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           SK + +S+LV+ I+ +   L ++D    V  +F+EI ++   G  +++  F  F VK + 
Sbjct: 5   SKAVIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRP 64

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           +R GRN +T + V ++ + V  FK    L+ R+   +
Sbjct: 65  ARSGRNPRTGETVDVEEKWVPFFKTGKELRDRLNGAV 101


>gi|20560029|gb|AAM27778.1|AF498415_2 HimD [Pseudomonas aeruginosa]
          Length = 93

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I    G LS KD    + T+  ++  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERIVTHQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V++D + V  FK    L+ R+ +
Sbjct: 61 GRNPKTGESVRLDGKFVPHFKPGKELRDRVNE 92


>gi|303230302|ref|ZP_07317069.1| DNA-binding protein HU 1 [Veillonella atypica ACS-134-V-Col7a]
 gi|302515085|gb|EFL57060.1| DNA-binding protein HU 1 [Veillonella atypica ACS-134-V-Col7a]
          Length = 99

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 55/99 (55%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L+ S++++  L++KD+ + V  +F+ + +    G  +++  F TF V+++ +R G
Sbjct: 1   MNKTELIASVAQKTELTKKDAEKAVKAVFDTVAEELAAGGKVQVIGFGTFEVRERAAREG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           RN Q  + + I   +   FKA   LK+++      ++  
Sbjct: 61  RNPQNGKTITIKASKSPAFKAGKGLKEQVNAAPAKKRKK 99


>gi|78065633|ref|YP_368402.1| integration host factor subunit beta [Burkholderia sp. 383]
 gi|206561284|ref|YP_002232049.1| integration host factor subunit beta [Burkholderia cenocepacia
           J2315]
 gi|123770067|sp|Q39IF8|IHFB_BURS3 RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|226709775|sp|B4EB39|IHFB_BURCJ RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|77966378|gb|ABB07758.1| Integration host factor, beta subunit [Burkholderia sp. 383]
 gi|198037326|emb|CAR53251.1| integration host factor beta-subunit [Burkholderia cenocepacia
           J2315]
 gi|325520509|gb|EGC99605.1| integration host factor subunit beta [Burkholderia sp. TJI49]
          Length = 107

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + D+  +G  I+I  F +F + ++ +RV
Sbjct: 1   MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALAKGHRIEIRGFGSFGLNRRPARV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           GRN ++ ++V++  + V  FK    L++R+ D   G     DD 
Sbjct: 61  GRNPKSGEKVQVPEKFVPHFKPGKELRERV-DGRAGEPLKADDP 103


>gi|78221576|ref|YP_383323.1| histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
 gi|78192831|gb|ABB30598.1| Histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
          Length = 94

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 52/94 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV +++K   L++  + + V  + + + D+  +G+ + +  F +F V  + +R G
Sbjct: 1  MTKAELVDAVAKSANLTKAAADKAVGAVISAVSDALKKGDKVTLVGFGSFEVSTRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN QT +E+KI   +V  F+    LK  +    +
Sbjct: 61 RNPQTGKEIKIAAAKVPKFRPGKALKDAVAAKKK 94


>gi|56707752|ref|YP_169648.1| histone-like protein HU form B [Francisella tularensis subsp.
          tularensis SCHU S4]
 gi|89256252|ref|YP_513614.1| histone-like protein HU form B [Francisella tularensis subsp.
          holarctica LVS]
 gi|110670223|ref|YP_666780.1| histone-like protein HU form B [Francisella tularensis subsp.
          tularensis FSC198]
 gi|115314709|ref|YP_763432.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          holarctica OSU18]
 gi|134302066|ref|YP_001122035.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          tularensis WY96-3418]
 gi|156502313|ref|YP_001428378.1| DNA-binding protein HU [Francisella tularensis subsp. holarctica
          FTNF002-00]
 gi|187931474|ref|YP_001891458.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          mediasiatica FSC147]
 gi|224456822|ref|ZP_03665295.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          tularensis MA00-2987]
 gi|254367591|ref|ZP_04983612.1| histone-like protein hu form B [Francisella tularensis subsp.
          holarctica 257]
 gi|254369241|ref|ZP_04985253.1| hypothetical protein FTAG_00194 [Francisella tularensis subsp.
          holarctica FSC022]
 gi|254370256|ref|ZP_04986261.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          tularensis FSC033]
 gi|254874565|ref|ZP_05247275.1| DNA-binding protein [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|290953592|ref|ZP_06558213.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          holarctica URFT1]
 gi|295313093|ref|ZP_06803783.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          holarctica URFT1]
 gi|56604244|emb|CAG45260.1| Histone-like protein HU form B [Francisella tularensis subsp.
          tularensis SCHU S4]
 gi|89144083|emb|CAJ79334.1| Histone-like protein HU form B [Francisella tularensis subsp.
          holarctica LVS]
 gi|110320556|emb|CAL08643.1| Histone-like protein HU form B [Francisella tularensis subsp.
          tularensis FSC198]
 gi|115129608|gb|ABI82795.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          holarctica OSU18]
 gi|134049843|gb|ABO46914.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          tularensis WY96-3418]
 gi|134253402|gb|EBA52496.1| histone-like protein hu form B [Francisella tularensis subsp.
          holarctica 257]
 gi|151568499|gb|EDN34153.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          tularensis FSC033]
 gi|156252916|gb|ABU61422.1| DNA-binding protein HU [Francisella tularensis subsp. holarctica
          FTNF002-00]
 gi|157122191|gb|EDO66331.1| hypothetical protein FTAG_00194 [Francisella tularensis subsp.
          holarctica FSC022]
 gi|187712383|gb|ACD30680.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          mediasiatica FSC147]
 gi|254840564|gb|EET19000.1| DNA-binding protein [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|282158923|gb|ADA78314.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
          tularensis NE061598]
          Length = 90

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV +I+KE  ++++ ++  +      +  +   G+++ +  F TF VK++  R G
Sbjct: 1  MNKSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSPREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + +KI   +V  FKAS  LK  + 
Sbjct: 61 RNPKTGETIKIPASKVPSFKASKGLKDAVK 90


>gi|159903915|ref|YP_001551259.1| histone-like DNA-binding protein [Prochlorococcus marinus str.
          MIT 9211]
 gi|159889091|gb|ABX09305.1| Bacterial histone-like DNA-binding protein [Prochlorococcus
          marinus str. MIT 9211]
          Length = 92

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ D    +    + I DS V G+ + I  F +F  + + +R G
Sbjct: 1  MNKADLVNLVAARTELTKTDVALVIDAAIDTIIDSVVEGKKVSILGFGSFEPRDRSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N +T +++KI  +RV  F A  + K R+ 
Sbjct: 61 LNPKTGEKIKIPAKRVPAFTAGKLFKDRVQ 90


>gi|85709150|ref|ZP_01040216.1| integration host factor alpha-subunit [Erythrobacter sp. NAP1]
 gi|85690684|gb|EAQ30687.1| integration host factor alpha-subunit [Erythrobacter sp. NAP1]
          Length = 99

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/93 (41%), Positives = 63/93 (67%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+DL ++I+++ GLSR +S   V ++  ++ D+   GE +KIS F +F ++ K  R+
Sbjct: 6  TLTRADLAETINRKMGLSRAESLDLVESILTKMSDALANGENVKISGFGSFVLRDKNERI 65

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T  EV I PRRV+ F+AS +LK++I   
Sbjct: 66 GRNPKTGVEVPITPRRVLTFRASQLLKEQIAKG 98


>gi|312882499|ref|ZP_07742240.1| integration host factor subunit beta [Vibrio caribbenthicus ATCC
          BAA-2122]
 gi|309369899|gb|EFP97410.1| integration host factor subunit beta [Vibrio caribbenthicus ATCC
          BAA-2122]
          Length = 92

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + +++  LS K+    V  +   +  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLEGGDRIEIRGFGSFSLHFREPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V +D + V  FK    L++R+ 
Sbjct: 61 GRNPKTGDKVDLDGKYVPHFKPGKELRERVN 91


>gi|300722537|ref|YP_003711827.1| integration host factor (IHF) subunit beta [Xenorhabdus
          nematophila ATCC 19061]
 gi|297629044|emb|CBJ89629.1| integration host factor (IHF), beta subunit, site-specific
          recombination [Xenorhabdus nematophila ATCC 19061]
          Length = 96

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++++   +  K     V  + + + ++   GE I++  F +F +  +  RV
Sbjct: 1  MTKSELIERLAEQQSHMPAKAVEDAVKEMLDHMAETLAAGERIEVRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R+ 
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91


>gi|261868043|ref|YP_003255965.1| integration host factor subunit alpha [Aggregatibacter
          actinomycetemcomitans D11S-1]
 gi|293389947|ref|ZP_06634281.1| integration host factor, alpha subunit [Aggregatibacter
          actinomycetemcomitans D7S-1]
 gi|261413375|gb|ACX82746.1| integration host factor, alpha subunit [Aggregatibacter
          actinomycetemcomitans D11S-1]
 gi|290950481|gb|EFE00600.1| integration host factor, alpha subunit [Aggregatibacter
          actinomycetemcomitans D7S-1]
          Length = 98

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 55/92 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ +L +++ ++F LS++++   V + F EI  +   G  +K+S F  F ++ K SR 
Sbjct: 2  TLTKVELAENLIEKFHLSKREAKDLVESFFEEIRVALETGNDVKLSGFGNFELRDKASRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V +  RRVVVFK    L+ R+  
Sbjct: 62 GRNPKTGESVPVSARRVVVFKPGQKLRNRVEK 93


>gi|300023830|ref|YP_003756441.1| integration host factor subunit beta [Hyphomicrobium
          denitrificans ATCC 51888]
 gi|299525651|gb|ADJ24120.1| integration host factor, beta subunit [Hyphomicrobium
          denitrificans ATCC 51888]
          Length = 99

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I+     L  +D  R +  +F+EI D+  RG+ +++  F  F VK + SR 
Sbjct: 1  MIKSELVQKIATANPHLYHRDVERIINVIFDEIVDALSRGDRVELRGFGAFTVKHRASRQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T   V +  + V  FK    L+ R+ 
Sbjct: 61 GRNPRTGTTVAVAEKFVPFFKTGKELRDRLN 91


>gi|237814623|ref|ZP_04593621.1| integration host factor, beta subunit [Brucella abortus str. 2308
           A]
 gi|237789460|gb|EEP63670.1| integration host factor, beta subunit [Brucella abortus str. 2308
           A]
          Length = 117

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 1/97 (1%)

Query: 2   SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           SK + +S+LV+ I+ +   L ++D    V  +F+EI ++   G  +++  F  F VK + 
Sbjct: 21  SKAVIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRP 80

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           +R GRN +T + V ++ + V  FK    L+ R+   +
Sbjct: 81  ARSGRNPRTGETVDVEEKWVPFFKTGKKLRDRLNGAV 117


>gi|170730702|ref|YP_001776135.1| integration host factor subunit beta [Xylella fastidiosa M12]
 gi|167965495|gb|ACA12505.1| integration host factor, beta subunit [Xylella fastidiosa M12]
          Length = 111

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 1/101 (0%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L++ ++K    L   D    V +L   +  +   G+ I+I  F +F +  +  R 
Sbjct: 8   MTKSELIEILTKRQAHLKSDDVDLAVKSLLEMMGGALSEGDRIEIRGFGSFSLHYRPPRC 67

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           GRN +T + V +  + V  FK    L++R+   +   +C  
Sbjct: 68  GRNPKTGESVALPGKYVPHFKPGKELRERVASVVPLAECGD 108


>gi|127511364|ref|YP_001092561.1| histone family protein DNA-binding protein [Shewanella loihica
          PV-4]
 gi|126636659|gb|ABO22302.1| histone family protein DNA-binding protein [Shewanella loihica
          PV-4]
          Length = 90

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  I++   L++ ++ R + +    + ++   GE I I  F +F    + +R G
Sbjct: 1  MNKTELVAKIAESAELTKAEAARALKSFEETVAEAMKNGEKISIVGFGSFETTSRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I    V  FKA   LK  + 
Sbjct: 61 RNPQTGKEIQIPAAVVPKFKAGKTLKDSVN 90


>gi|291279359|ref|YP_003496194.1| DNA-binding protein HU [Deferribacter desulfuricans SSM1]
 gi|290754061|dbj|BAI80438.1| DNA-binding protein HU [Deferribacter desulfuricans SSM1]
          Length = 90

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L++ I+ + GL + ++ R +      + ++   G+ + +  F TF V ++  R G
Sbjct: 1  MNKKELIEKIASKAGLKKSEAERALAAFEEAVIEALKAGDKVTLVGFGTFSVSERKERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +   F A  +LK  + 
Sbjct: 61 RNPQTGEEIIIPATKTPKFSAGKLLKDSVK 90


>gi|182677372|ref|YP_001831518.1| histone family protein DNA-binding protein [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182633255|gb|ACB94029.1| histone family protein DNA-binding protein [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 171

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/93 (44%), Positives = 60/93 (64%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+TR DL  S+    G+SRKD+ R VT + +EI ++ VRGE ++++SF  F ++ K  R+
Sbjct: 71  TVTRKDLASSVYDCIGISRKDADRLVTEVLSEITEALVRGENVRLASFGNFEIRAKTQRI 130

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           GRN +T     I PRRV+ FKAS +L  R+  D
Sbjct: 131 GRNPRTGVAAVIPPRRVLKFKASKVLLDRLNGD 163


>gi|295134367|ref|YP_003585043.1| histone-like DNA-binding protein [Zunongwangia profunda SM-A87]
 gi|294982382|gb|ADF52847.1| histone-like DNA-binding protein [Zunongwangia profunda SM-A87]
          Length = 90

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++++ G+S+  + + + +    I  S  +G+ + +  F ++ V ++ +R G
Sbjct: 1  MNKTDLIDAMAEDAGISKAAAKKALESFLGGIETSLKKGDRVSLVGFGSWSVSKRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI  + VV FKA + L+K + 
Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGADLQKAVN 90


>gi|172036192|ref|YP_001802693.1| putative histone-like DNA-binding protein [Cyanothece sp. ATCC
          51142]
 gi|171697646|gb|ACB50627.1| putative histone-like DNA-binding protein [Cyanothece sp. ATCC
          51142]
          Length = 93

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 49/93 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV  I+ +  L++K+++  +  L + I ++   G+ + +  F TF  + +  R G
Sbjct: 1  MNKEELVNMIAAKTRLTKKETSHILDALTDTIMETVADGDKVVLVGFGTFEPRDRKERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           N QT Q + I    V  F A  + K+++++ +
Sbjct: 61 MNPQTGQPITIPATTVPAFSAGKLFKEKVVESL 93


>gi|222084668|ref|YP_002543197.1| integration host factor, beta subunit [Agrobacterium radiobacter
          K84]
 gi|254803525|sp|B9J885|IHFB_AGRRK RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|221722116|gb|ACM25272.1| integration host factor, beta subunit [Agrobacterium radiobacter
          K84]
          Length = 102

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ ++     L  +D    V  + +EI D+   G  +++  F  F VK + SR 
Sbjct: 1  MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T   V ++ + V  FK    L++R+ 
Sbjct: 61 GRNPRTGDTVFVEEKWVPFFKTGKELRERLN 91


>gi|206890650|ref|YP_002249614.1| DNA-binding protein HU 1 [Thermodesulfovibrio yellowstonii DSM
          11347]
 gi|206742588|gb|ACI21645.1| DNA-binding protein HU 1 [Thermodesulfovibrio yellowstonii DSM
          11347]
          Length = 90

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  I+ +  L++ ++ + +      + ++  +G+ + +  F +F+V ++ +R G
Sbjct: 1  MTKAELVSKIASKAELTKAEAAKALDATIEAVKEALKKGDKVTLVGFGSFYVSKRKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T QE+KI   +V  F A   LK+ + 
Sbjct: 61 RNPRTGQEIKIPATKVPKFTAGKSLKEAVK 90


>gi|171463686|ref|YP_001797799.1| integration host factor, alpha subunit [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193224|gb|ACB44185.1| integration host factor, alpha subunit [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 107

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 55/98 (56%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+++L +++  + GL+++++   +   F+ I  S   G  +KIS F  F ++ K +R 
Sbjct: 9   TVTKNELSEALFDQVGLNKREAKDMIDAFFDRIGRSLEAGVEVKISGFGNFQLRNKSARP 68

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN +T Q + I  RRVV F AS  LK  +    R  +
Sbjct: 69  GRNPKTGQMIPIAARRVVTFHASQKLKDVVESHARENR 106


>gi|198449285|ref|YP_002221439.1| DNA binding protein HU-beta [Burkholderia phage KS10]
 gi|206559950|ref|YP_002230714.1| histone-like DNA-binding phage protein [Burkholderia cenocepacia
          J2315]
 gi|197725446|gb|ACH72942.1| gp23 [Burkholderia phage KS10]
 gi|198035991|emb|CAR51884.1| histone-like DNA-binding phage protein [Burkholderia cenocepacia
          J2315]
          Length = 90

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 43/90 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+ +++K   L++  + + V  + N I         + +S F TF V  + +R G
Sbjct: 1  MNKSQLIDAVAKNAELTKAQAAQSVEAVLNAIQLGLQEDGDVALSGFGTFAVAARKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T + ++I   + V FK    LK  + 
Sbjct: 61 RNPATGESIQIAASKAVKFKPGKALKDAVN 90


>gi|78357101|ref|YP_388550.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
 gi|78219506|gb|ABB38855.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
          Length = 90

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV+ I+++  L++ ++ R +      + D  V+   + ++ F TF V+ +  R G
Sbjct: 1  MTKADLVEKIAEKANLTKANAERSLNAFLESVEDVLVKEGKLTLTGFGTFMVETRQERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   + I   +VV F+   +LK  + 
Sbjct: 61 RNPRTGDPIVIPAAKVVKFRPGKLLKDAVK 90


>gi|145638882|ref|ZP_01794490.1| integration host factor alpha-subunit [Haemophilus influenzae
          PittII]
 gi|145271854|gb|EDK11763.1| integration host factor alpha-subunit [Haemophilus influenzae
          PittII]
 gi|301170051|emb|CBW29655.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Haemophilus influenzae 10810]
 gi|309750859|gb|ADO80843.1| Integration host factor, alpha subunit [Haemophilus influenzae
          R2866]
          Length = 96

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 52/92 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+ D+++ +S ++ LS++D+   V     EI  S   G+ +K+S F  F ++ K SR 
Sbjct: 3  TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRSSLESGQDVKLSGFGNFELRDKSSRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T   V +  RRVV FK    L+ R+  
Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARVEK 94


>gi|255994801|ref|ZP_05427936.1| DNA-binding protein HU [Eubacterium saphenum ATCC 49989]
 gi|255993514|gb|EEU03603.1| DNA-binding protein HU [Eubacterium saphenum ATCC 49989]
          Length = 92

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  I+++ G ++KD+   +    + + ++ ++GE +++  F TF  + + +R G
Sbjct: 1  MNKADLVAVIAEKTGFTKKDAEATINAFVSTVEEALIKGEKVQLIGFGTFEARDRKARKG 60

Query: 65 RNLQT-NQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +   + +KI   +  VFKA   LK  +  
Sbjct: 61 RNPRNPGEVIKIPASKAPVFKAGKALKAAVNK 92


>gi|325915996|ref|ZP_08178289.1| integration host factor, beta subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325537806|gb|EGD09509.1| integration host factor, beta subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 103

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 1/103 (0%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L++ +++    L   D    V +L   +  +   G+ I+I  F +F +  +  R+
Sbjct: 1   MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN +T + V +  + V  FK    L++R+   +     +  D
Sbjct: 61  GRNPKTGESVALPGKHVPHFKPGKELRERVSSVVPVDMADTAD 103


>gi|124267145|ref|YP_001021149.1| nucleoid protein Hbs [Methylibium petroleiphilum PM1]
 gi|124259920|gb|ABM94914.1| bacterial nucleoid protein Hbs [Methylibium petroleiphilum PM1]
          Length = 90

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+K+  +S+  +TR +  L   +  +  +G ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIAKQADISKAAATRALEALIGGVRTTLKKGGSVSLVGFGTFAVTKRAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   +V  F+    LK  + 
Sbjct: 61 RNPRTGDTIKIKAAKVPKFRPGKALKDALN 90


>gi|58038619|ref|YP_190583.1| integration host factor beta-subunit [Gluconobacter oxydans 621H]
 gi|58001033|gb|AAW59927.1| Integration host factor beta-subunit [Gluconobacter oxydans 621H]
          Length = 101

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 1/101 (0%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +TRS+L+  ++     L  +D  R V  +F+EI  +  RG+ +++  F  F  +++ +R 
Sbjct: 1   MTRSELIAELAAAYPHLLTRDIERIVHAVFDEIGAALARGDRVELRGFGAFLPRERAART 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           GRN +T   V ++ + V  FK    L++R+   +  RK   
Sbjct: 61  GRNPRTGDVVPVEEKSVPFFKVGKELRERVNQRLSTRKNGD 101


>gi|302383009|ref|YP_003818832.1| integration host factor, subunit alpha [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193637|gb|ADL01209.1| integration host factor, alpha subunit [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 102

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/98 (37%), Positives = 63/98 (64%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+TR+DL +++ +E GLSR++ +  V      I +S  +G+ +K+S F  F V++K +R
Sbjct: 5   QTLTRADLCEAVLEEVGLSRQECSSLVERTLELIVESLEQGQTVKLSGFGVFQVREKSAR 64

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           +GRN +T +   I+PRRV+ F+AS I+K R+     G 
Sbjct: 65  MGRNPKTGEPAAINPRRVISFRASQIMKSRVHGATNGA 102


>gi|217976838|ref|YP_002360985.1| integration host factor, alpha subunit [Methylocella silvestris
           BL2]
 gi|217502214|gb|ACK49623.1| integration host factor, alpha subunit [Methylocella silvestris
           BL2]
          Length = 112

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/95 (46%), Positives = 63/95 (66%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            +T+TR DL +S+ +  GLSRK+S   V  + NE+ D+   GE +K+SSF +F V+ K  
Sbjct: 12  GRTVTRVDLAESVYRCVGLSRKESAALVQMVLNELSDALAEGETVKLSSFGSFVVRSKSE 71

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R+GRN +T  EV I  RRV+VFK SS+LK R+  +
Sbjct: 72  RIGRNPKTGIEVPITQRRVLVFKPSSVLKARVNGE 106


>gi|134095741|ref|YP_001100816.1| integration host factor subunit beta [Herminiimonas arsenicoxydans]
 gi|152980763|ref|YP_001354357.1| integration host factor subunit beta [Janthinobacterium sp.
           Marseille]
 gi|166918551|sp|A4G858|IHFB_HERAR RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|166918552|sp|A6T1G0|IHFB_JANMA RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|133739644|emb|CAL62695.1| Integration host factor subunit beta (IHF-beta) [Herminiimonas
           arsenicoxydans]
 gi|151280840|gb|ABR89250.1| integration host factor beta-subunit [Janthinobacterium sp.
           Marseille]
          Length = 101

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 2/102 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+  +++ +  L  KD+   V T+ + + D+   G+ I+I  F +F +  +  R+
Sbjct: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMSDALATGQRIEIRGFGSFALNSRPPRI 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           GRN ++  +V +  +RV  FK    L++R+ D M G+   +D
Sbjct: 61  GRNPKSGDKVMVPEKRVPHFKPGKQLRERV-DAMVGQPIIED 101


>gi|326799514|ref|YP_004317333.1| histone family protein DNA-binding protein [Sphingobacterium sp.
           21]
 gi|326550278|gb|ADZ78663.1| histone family protein DNA-binding protein [Sphingobacterium sp.
           21]
          Length = 113

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 54/99 (54%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S T+ ++DL+  I+ + G+++  + + ++++ N +  +  +GE++ +  F TF V Q+ +
Sbjct: 15  SITMNKADLITKIAADAGITKVQAEKALSSITNSVTTTLKKGESVSLIGFGTFTVGQRAA 74

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           R GRN  T   +KI   +V  F+    L++ +      +
Sbjct: 75  RSGRNPNTGAVIKIKATKVPKFRPGKSLREAVASAKTKK 113


>gi|251792548|ref|YP_003007274.1| integration host factor subunit alpha [Aggregatibacter
          aphrophilus NJ8700]
 gi|247533941|gb|ACS97187.1| integration host factor, alpha subunit [Aggregatibacter
          aphrophilus NJ8700]
          Length = 98

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 55/92 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ +L +++ ++F LS++++   V + F EI  +   G  +K+S F  F ++ K SR 
Sbjct: 2  TLTKVELAENLIEKFHLSKREAKDLVESFFEEIRVALETGNDVKLSGFGNFELRDKASRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V +  RRVVVFK    L+ R+  
Sbjct: 62 GRNPKTGESVPVSARRVVVFKPGQKLRSRVEK 93


>gi|53720124|ref|YP_109110.1| integration host factor subunit beta [Burkholderia pseudomallei
           K96243]
 gi|53724786|ref|YP_102240.1| integration host factor subunit beta [Burkholderia mallei ATCC
           23344]
 gi|76810828|ref|YP_334371.1| integration host factor subunit beta [Burkholderia pseudomallei
           1710b]
 gi|121598535|ref|YP_993873.1| integration host factor subunit beta [Burkholderia mallei SAVP1]
 gi|124385018|ref|YP_001026936.1| integration host factor subunit beta [Burkholderia mallei NCTC
           10229]
 gi|126441395|ref|YP_001059900.1| integration host factor subunit beta [Burkholderia pseudomallei
           668]
 gi|126451382|ref|YP_001079777.1| integration host factor subunit beta [Burkholderia mallei NCTC
           10247]
 gi|126452191|ref|YP_001067189.1| integration host factor subunit beta [Burkholderia pseudomallei
           1106a]
 gi|134277133|ref|ZP_01763848.1| integration host factor, beta subunit [Burkholderia pseudomallei
           305]
 gi|166999733|ref|ZP_02265567.1| integration host factor, beta subunit [Burkholderia mallei PRL-20]
 gi|167720665|ref|ZP_02403901.1| integration host factor subunit beta [Burkholderia pseudomallei
           DM98]
 gi|167739652|ref|ZP_02412426.1| integration host factor subunit beta [Burkholderia pseudomallei 14]
 gi|167816857|ref|ZP_02448537.1| integration host factor subunit beta [Burkholderia pseudomallei 91]
 gi|167825257|ref|ZP_02456728.1| integration host factor subunit beta [Burkholderia pseudomallei 9]
 gi|167846761|ref|ZP_02472269.1| integration host factor subunit beta [Burkholderia pseudomallei
           B7210]
 gi|167895349|ref|ZP_02482751.1| integration host factor subunit beta [Burkholderia pseudomallei
           7894]
 gi|167903735|ref|ZP_02490940.1| integration host factor subunit beta [Burkholderia pseudomallei
           NCTC 13177]
 gi|167911984|ref|ZP_02499075.1| integration host factor subunit beta [Burkholderia pseudomallei
           112]
 gi|167919975|ref|ZP_02507066.1| integration host factor subunit beta [Burkholderia pseudomallei
           BCC215]
 gi|217420526|ref|ZP_03452031.1| integration host factor, beta subunit [Burkholderia pseudomallei
           576]
 gi|237813294|ref|YP_002897745.1| integration host factor, beta subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238561682|ref|ZP_00441665.2| integration host factor, beta subunit [Burkholderia mallei GB8
           horse 4]
 gi|242317605|ref|ZP_04816621.1| integration host factor, beta subunit [Burkholderia pseudomallei
           1106b]
 gi|254177019|ref|ZP_04883676.1| integration host factor, beta subunit [Burkholderia mallei ATCC
           10399]
 gi|254181090|ref|ZP_04887688.1| integration host factor, beta subunit [Burkholderia pseudomallei
           1655]
 gi|254191994|ref|ZP_04898494.1| integration host factor, beta subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254195591|ref|ZP_04902018.1| integration host factor, beta subunit [Burkholderia pseudomallei
           S13]
 gi|254203924|ref|ZP_04910284.1| integration host factor, beta subunit [Burkholderia mallei FMH]
 gi|254208904|ref|ZP_04915252.1| integration host factor, beta subunit [Burkholderia mallei JHU]
 gi|254258262|ref|ZP_04949316.1| integration host factor, beta subunit [Burkholderia pseudomallei
           1710a]
 gi|254360041|ref|ZP_04976311.1| integration host factor, beta subunit [Burkholderia mallei
           2002721280]
 gi|81685156|sp|Q62M28|IHFB_BURMA RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|81690265|sp|Q63S07|IHFB_BURPS RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|123598384|sp|Q3JPY2|IHFB_BURP1 RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|226709777|sp|A3MHP1|IHFB_BURM7 RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|226709778|sp|A2S4R7|IHFB_BURM9 RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|226709779|sp|A1V6M0|IHFB_BURMS RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|226709780|sp|A3NXW8|IHFB_BURP0 RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|226709781|sp|A3NC29|IHFB_BURP6 RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|52210538|emb|CAH36521.1| integration host factor beta-subunit [Burkholderia pseudomallei
           K96243]
 gi|52428209|gb|AAU48802.1| integration host factor, beta subunit [Burkholderia mallei ATCC
           23344]
 gi|76580281|gb|ABA49756.1| integration host factor, beta subunit [Burkholderia pseudomallei
           1710b]
 gi|121227345|gb|ABM49863.1| integration host factor, beta subunit [Burkholderia mallei SAVP1]
 gi|124293038|gb|ABN02307.1| integration host factor, beta subunit [Burkholderia mallei NCTC
           10229]
 gi|126220888|gb|ABN84394.1| integration host factor, beta subunit [Burkholderia pseudomallei
           668]
 gi|126225833|gb|ABN89373.1| integration host factor, beta subunit [Burkholderia pseudomallei
           1106a]
 gi|126244252|gb|ABO07345.1| integration host factor, beta subunit [Burkholderia mallei NCTC
           10247]
 gi|134250783|gb|EBA50862.1| integration host factor, beta subunit [Burkholderia pseudomallei
           305]
 gi|147745436|gb|EDK52516.1| integration host factor, beta subunit [Burkholderia mallei FMH]
 gi|147750780|gb|EDK57849.1| integration host factor, beta subunit [Burkholderia mallei JHU]
 gi|148029281|gb|EDK87186.1| integration host factor, beta subunit [Burkholderia mallei
           2002721280]
 gi|157987816|gb|EDO95581.1| integration host factor, beta subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160698060|gb|EDP88030.1| integration host factor, beta subunit [Burkholderia mallei ATCC
           10399]
 gi|169652337|gb|EDS85030.1| integration host factor, beta subunit [Burkholderia pseudomallei
           S13]
 gi|184211629|gb|EDU08672.1| integration host factor, beta subunit [Burkholderia pseudomallei
           1655]
 gi|217395938|gb|EEC35955.1| integration host factor, beta subunit [Burkholderia pseudomallei
           576]
 gi|237504544|gb|ACQ96862.1| integration host factor, beta subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238524131|gb|EEP87566.1| integration host factor, beta subunit [Burkholderia mallei GB8
           horse 4]
 gi|242140844|gb|EES27246.1| integration host factor, beta subunit [Burkholderia pseudomallei
           1106b]
 gi|243064226|gb|EES46412.1| integration host factor, beta subunit [Burkholderia mallei PRL-20]
 gi|254216951|gb|EET06335.1| integration host factor, beta subunit [Burkholderia pseudomallei
           1710a]
          Length = 107

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 2/106 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + D+  +G  I+I  F +F + ++ +RV
Sbjct: 1   MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
           GRN ++ ++V++  + V  FK    L++R+ D   G     D+   
Sbjct: 61  GRNPKSGEKVQVPEKHVPHFKPGKELRERV-DGRAGEPLKNDEPED 105


>gi|116749538|ref|YP_846225.1| histone family protein DNA-binding protein [Syntrophobacter
          fumaroxidans MPOB]
 gi|116698602|gb|ABK17790.1| histone family protein DNA-binding protein [Syntrophobacter
          fumaroxidans MPOB]
          Length = 90

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  I+   G+++  + + V      +  +   GE + +  F TF V  +  R G
Sbjct: 1  MTKADLVSKIAGAGGITKAQAEKAVDGFVAAVSQALSTGEKVTLVGFGTFSVGSRSQREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +++KI   +VV FK    L  ++ 
Sbjct: 61 RNPRTGEKIKIPASKVVKFKPGKSLSDKVK 90


>gi|300112900|ref|YP_003759475.1| integration host factor subunit beta [Nitrosococcus watsonii
          C-113]
 gi|299538837|gb|ADJ27154.1| integration host factor, beta subunit [Nitrosococcus watsonii
          C-113]
          Length = 96

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S L++ ++ ++  LS +D    V  L   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSGLIERLAQRQALLSYRDVELAVKMLLEVMSQALAQGERIEIRGFGSFSLHYRPPRS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  + V  FK    L++R+
Sbjct: 61 GRNPKTGDTVPLSSKYVPHFKPGKELRERV 90


>gi|269102377|ref|ZP_06155074.1| integration host factor beta subunit [Photobacterium damselae
          subsp. damselae CIP 102761]
 gi|268162275|gb|EEZ40771.1| integration host factor beta subunit [Photobacterium damselae
          subsp. damselae CIP 102761]
          Length = 95

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + S++  LS K     +  +  ++  +  +GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLCSQQTHLSAKQVEDAIKEILEQMATTLEQGERIEIRGFGSFSLHFRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T  +V++D + V  FK    L+ R+   + 
Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRVNAQVA 95


>gi|118580717|ref|YP_901967.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
 gi|118503427|gb|ABK99909.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
          Length = 97

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/90 (42%), Positives = 56/90 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I ++ G S+K+S   V T+F+ I  +   GE IKI+ F  F VKQK  R G
Sbjct: 1  MTKADIVERIHQKIGFSKKESAEMVETVFSIIKSTLETGEKIKIAGFGNFVVKQKADRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + + I  RR++ FK S +LK  I 
Sbjct: 61 RNPQTGETITIAARRILTFKPSQVLKNAIN 90


>gi|120610349|ref|YP_970027.1| histone family protein DNA-binding protein [Acidovorax citrulli
          AAC00-1]
 gi|326316509|ref|YP_004234181.1| histone family protein DNA-binding protein [Acidovorax avenae
          subsp. avenae ATCC 19860]
 gi|120588813|gb|ABM32253.1| histone family protein DNA-binding protein [Acidovorax citrulli
          AAC00-1]
 gi|323373345|gb|ADX45614.1| histone family protein DNA-binding protein [Acidovorax avenae
          subsp. avenae ATCC 19860]
          Length = 90

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    +S+  + R + ++   +  +  +G  + +  F TF V ++ +R G
Sbjct: 1  MNKSELIEQIATNADISKAAAARALESMIESVKKTLKKGGTVSLVGFGTFAVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   +V  F+    LK  + 
Sbjct: 61 RNPRTGDTIKIKAAKVPKFRPGKALKDALN 90


>gi|152983243|ref|YP_001353224.1| DNA-binding protein HU-beta ( histone-like DNA-binding protein)
          [Janthinobacterium sp. Marseille]
 gi|151283320|gb|ABR91730.1| DNA-binding protein Hu-beta (bacterial histone-like DNA-binding
          protein) [Janthinobacterium sp. Marseille]
          Length = 90

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+    +S+  + R + ++   +  +  +  ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIDHIAGSADISKAAAARALDSVIGAVKTTLKKNGSVTLVGFGTFSVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + +KI   +V  FK    LK  + 
Sbjct: 61 RNPRTGEAIKIKAAKVPKFKPGKALKDAVN 90


>gi|121602248|ref|YP_989618.1| integration host factor subunit beta [Bartonella bacilliformis
          KC583]
 gi|120614425|gb|ABM45026.1| integration host factor, beta subunit [Bartonella bacilliformis
          KC583]
          Length = 92

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ I++    L ++D    V T+F EI  +  +G  I++  F  F VK + +R 
Sbjct: 1  MIKSELIQIIARRNPHLLQRDVENIVNTVFEEISIALAKGHRIELRGFGAFSVKNRSARN 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V ++ + V  FK    L+ R+  
Sbjct: 61 GRNPRTGETVMVEEKWVPSFKTGKELRDRLNQ 92


>gi|319941268|ref|ZP_08015599.1| histone family protein DNA-binding protein [Sutterella
          wadsworthensis 3_1_45B]
 gi|319805189|gb|EFW02012.1| histone family protein DNA-binding protein [Sutterella
          wadsworthensis 3_1_45B]
          Length = 91

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 49/91 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L  +++++ GLS+ D+ + +   F  + +   +G+A++I  F  F V    +R G
Sbjct: 1  MNKTELTAAVAQKAGLSKSDAAKVLGAFFETVSEELSKGQAVQIIGFGNFEVADYKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT   ++I   +   F A S LKK +  
Sbjct: 61 RNPQTGAVLEIPAGKRPKFTAGSALKKAVAG 91


>gi|313891625|ref|ZP_07825232.1| DNA-binding protein HU [Dialister microaerophilus UPII 345-E]
 gi|329122095|ref|ZP_08250703.1| DNA-binding protein HU [Dialister micraerophilus DSM 19965]
 gi|313119903|gb|EFR43088.1| DNA-binding protein HU [Dialister microaerophilus UPII 345-E]
 gi|327466902|gb|EGF12418.1| DNA-binding protein HU [Dialister micraerophilus DSM 19965]
          Length = 92

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 56/90 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++  +++KD+ + V  + + I D+ V+GE +++  F TF V+++ +R G
Sbjct: 1  MNKTELITAVAQKAEMTKKDAEKAVKAVIDVISDAMVKGEKVQLIGFGTFEVRERKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T + +KI   +   F+ S  LK+++ 
Sbjct: 61 HNPSTQKPIKIPASKAPAFRVSKQLKEKVN 90


>gi|87123689|ref|ZP_01079539.1| DNA binding protein HU [Synechococcus sp. RS9917]
 gi|88807469|ref|ZP_01122981.1| DNA binding protein HU [Synechococcus sp. WH 7805]
 gi|116073586|ref|ZP_01470848.1| DNA binding protein HU [Synechococcus sp. RS9916]
 gi|148240264|ref|YP_001225651.1| DNA-binding protein HU [Synechococcus sp. WH 7803]
 gi|86168258|gb|EAQ69515.1| DNA binding protein HU [Synechococcus sp. RS9917]
 gi|88788683|gb|EAR19838.1| DNA binding protein HU [Synechococcus sp. WH 7805]
 gi|116068891|gb|EAU74643.1| DNA binding protein HU [Synechococcus sp. RS9916]
 gi|147848803|emb|CAK24354.1| DNA-binding protein HU [Synechococcus sp. WH 7803]
          Length = 91

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ D +  V      I DS V G+ + I  F +F  +++ +R G
Sbjct: 1  MNKADLVNLVAARTELTKTDVSLVVDAAIETIIDSVVEGKKVSILGFGSFEPRERSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T +++KI  +RV  F A  + K R+  
Sbjct: 61 LNPKTGEKIKIPAKRVPAFTAGKMFKDRVQG 91


>gi|325521368|gb|EGD00211.1| histone family protein DNA-binding protein [Burkholderia sp.
          TJI49]
          Length = 92

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++   G+S+ D+++ V  + + I D+  RGE++++  F  F   Q+ +R G
Sbjct: 1  MNKQELIDAVATGAGVSKTDASKTVQAVLDAITDAVSRGESVQLIGFGAFSQGQRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T  E+ I     V F A    K  + 
Sbjct: 61 RNPTTGAEIAIPAANTVKFTAGKAFKDGVN 90


>gi|92114274|ref|YP_574202.1| integration host factor, beta subunit [Chromohalobacter
          salexigens DSM 3043]
 gi|123387402|sp|Q1QVK5|IHFB_CHRSD RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|91797364|gb|ABE59503.1| integration host factor, beta subunit [Chromohalobacter
          salexigens DSM 3043]
          Length = 98

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I+ ++  LS K+    V  +  +I  S   G  ++I  F +F +  +  R 
Sbjct: 1  MTKSELIEQIAIRQPELSAKEVEAAVKIILEDITQSLSSGGRVEIRGFGSFSLHFREPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T   V +  + V  FK    L++++   
Sbjct: 61 GRNPKTGDPVDLQGKYVPHFKPGKELREQVNAS 93


>gi|114770171|ref|ZP_01447709.1| integration host factor beta subunit [alpha proteobacterium
          HTCC2255]
 gi|114549008|gb|EAU51891.1| integration host factor beta subunit [alpha proteobacterium
          HTCC2255]
          Length = 93

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+LV+ I+ +   L ++D  R + T+F+EI D+   G  +++  F +F VKQ+ +R 
Sbjct: 1  MIRSELVEKIAAENPHLFQRDIERIIGTVFDEIIDAMSNGNRVELRGFGSFSVKQREARR 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V ++ + V  FK   +L+ R+ D 
Sbjct: 61 GRNPRTGETVDVEEKHVPFFKTGKLLRDRLNDS 93


>gi|296447327|ref|ZP_06889255.1| integration host factor, beta subunit [Methylosinus trichosporium
          OB3b]
 gi|296255192|gb|EFH02291.1| integration host factor, beta subunit [Methylosinus trichosporium
          OB3b]
          Length = 96

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 57/96 (59%), Gaps = 1/96 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ I+   G L ++D    VTT+ +EI  +  RG+ +++  F  F VK++ +R 
Sbjct: 1  MIKSELIQRIASRNGHLYQRDVETIVTTILDEIALALARGDRVELRGFGAFSVKRREART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T ++V ++ + V  FK    +++R+ +   G
Sbjct: 61 GRNPRTGEQVSVEEKSVPFFKTGKEMRERLNETSNG 96


>gi|291544066|emb|CBL17175.1| Bacterial nucleoid DNA-binding protein [Ruminococcus sp. 18P13]
          Length = 91

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 55/91 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLVK++S++    +KD+   + T+ + I D+  +GE ++I  F TF V+++G +  
Sbjct: 1  MTKADLVKAVSEKANCPKKDAEMAINTVIDCITDAVAQGEKVQIVGFGTFEVRERGEKKC 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +N +T +E+    ++  VFKA   LK  +  
Sbjct: 61 KNPRTGEEMITPAKKAPVFKAGKALKDAVNK 91


>gi|221067986|ref|ZP_03544091.1| histone family protein DNA-binding protein [Comamonas
          testosteroni KF-1]
 gi|221068049|ref|ZP_03544154.1| histone family protein DNA-binding protein [Comamonas
          testosteroni KF-1]
 gi|220713009|gb|EED68377.1| histone family protein DNA-binding protein [Comamonas
          testosteroni KF-1]
 gi|220713072|gb|EED68440.1| histone family protein DNA-binding protein [Comamonas
          testosteroni KF-1]
          Length = 90

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL++ ISK   +S++ + R ++   + I  +  +G+ ++I  F TF V ++  R G
Sbjct: 1  MNKSDLIEHISKSAEVSKQAADRALSATLDGIRQALKKGKVVQIIGFGTFSVGRRAGRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T ++V I   RV  FK    LK  + 
Sbjct: 61 RNPRTGEKVTIAATRVAKFKPGKHLKDAVN 90


>gi|307729641|ref|YP_003906865.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1003]
 gi|307584176|gb|ADN57574.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1003]
          Length = 90

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+++  +S+  + R +  +   +  +  +G ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIDHIAQQAEISKAAAGRALEAVIGGVKGTLKKGGSVTLVGFGTFAVGKRTARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   +V  F+    LK  + 
Sbjct: 61 RNPRTGDAIKIKAAKVPKFRPGKALKDALN 90


>gi|319789111|ref|YP_004150744.1| histone family protein DNA-binding protein [Thermovibrio
           ammonificans HB-1]
 gi|317113613|gb|ADU96103.1| histone family protein DNA-binding protein [Thermovibrio
           ammonificans HB-1]
          Length = 99

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 58/99 (58%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+S+LV +I+++ G+ +KD+   +      + ++  +GE ++I  F TF +K++  RV 
Sbjct: 1   MTKSELVAAIAEKAGIRKKDAEAALNAFIAVVTEALKKGEKVEIRGFGTFLMKERAQRVA 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           RN +T ++V + P+ V  FK    LK+    +++ ++  
Sbjct: 61  RNPKTGEKVTVPPKLVPAFKPGKDLKEATEQELKKKRKK 99


>gi|254466998|ref|ZP_05080409.1| integration host factor, beta subunit [Rhodobacterales bacterium
          Y4I]
 gi|206687906|gb|EDZ48388.1| integration host factor, beta subunit [Rhodobacterales bacterium
          Y4I]
          Length = 94

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L ++D  R V T+F E+ ++  RG+ +++  F  F VK++ SRV
Sbjct: 1  MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTNAMARGDRVELRGFGAFSVKKRDSRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V ++ + V  FK   +L+ R+  
Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRLNG 92


>gi|126215723|sp|Q47GF4|IHFA1_DECAR RecName: Full=Integration host factor subunit alpha 1;
          Short=IHF-alpha 1
          Length = 105

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 53/95 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT++DL + +S E G + +++   V   F E+ D   RGE IK++ F  F ++ K  R 
Sbjct: 2  TITKADLAEHLSNEIGFNNREAKEVVEAFFKELSDCLERGEEIKLAGFGVFSMRNKPERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +E+ I  RRVV F AS  LK  +     
Sbjct: 62 GRNPKTGEEIPITARRVVTFHASGCLKSAVESSPN 96


>gi|298293882|ref|YP_003695821.1| integration host factor subunit beta [Starkeya novella DSM 506]
 gi|296930393|gb|ADH91202.1| integration host factor, beta subunit [Starkeya novella DSM 506]
          Length = 97

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  + +EI  +  RG+ +++  F  F VK + +R 
Sbjct: 1  MIKSELVQRIAEANPHLYQRDVENIVNAILDEIVTALARGDRVELRGFGAFSVKSRPART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T   V +D + V  FK    +++R+ + +
Sbjct: 61 GRNPRTGAHVAVDGKAVPYFKTGKEMRERLNNGV 94


>gi|282882471|ref|ZP_06291092.1| DNA-binding protein HU [Peptoniphilus lacrimalis 315-B]
 gi|300814663|ref|ZP_07094914.1| DNA-binding protein HU [Peptoniphilus sp. oral taxon 836 str.
          F0141]
 gi|281297613|gb|EFA90088.1| DNA-binding protein HU [Peptoniphilus lacrimalis 315-B]
 gi|300511282|gb|EFK38531.1| DNA-binding protein HU [Peptoniphilus sp. oral taxon 836 str.
          F0141]
          Length = 92

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV SI+ +  L++KD+ + +      + ++  +GE +++  F TF V+Q+ +R G
Sbjct: 1  MNKQELVASIATKSSLTKKDAEKALNGFLASVEEALAKGEKVQLVGFGTFEVRQRKAREG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95
          RN +  +E +KI   +  VF++   LK+ +  
Sbjct: 61 RNPRNPEEVIKIPASKAPVFRSGKALKEAVNK 92


>gi|217976340|ref|YP_002360487.1| integration host factor, beta subunit [Methylocella silvestris
          BL2]
 gi|254803537|sp|B8EMZ0|IHFB_METSB RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|217501716|gb|ACK49125.1| integration host factor, beta subunit [Methylocella silvestris
          BL2]
          Length = 96

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I+     L  +D  + V  + +EI ++  RG+ +++  F  F VK + +RV
Sbjct: 1  MIKSELVQRIADRNPHLYLRDVEKIVNAILDEITNALSRGDRVELRGFGAFSVKHRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T   V +D + V  FK    +++R+ + +
Sbjct: 61 GRNPRTGAHVSVDEKVVPFFKTGKEMRERLNNGV 94


>gi|330814759|ref|YP_004362934.1| histone family protein DNA-binding protein [Burkholderia gladioli
          BSR3]
 gi|327374751|gb|AEA66102.1| histone family protein DNA-binding protein [Burkholderia gladioli
          BSR3]
          Length = 92

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++   G+S+ D+ + V  + + I ++  RGE++++  F  F   Q+ +R G
Sbjct: 1  MNKQELIDAVAASVGVSKTDAGKTVQAVLDVITEAVGRGESVQLIGFGAFSQGQRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T  E+ I     V F A    K  + 
Sbjct: 61 RNPSTGAEIAIPAANTVKFTAGKPFKDVVN 90


>gi|327479102|gb|AEA82412.1| HU family DNA-binding protein [Pseudomonas stutzeri DSM 4166]
          Length = 90

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L  +I+++  LS+  + R +  + +EI ++  R +++ +  F TF  + +G+R G
Sbjct: 1  MRKPELAAAIAEKADLSKDQANRVLNAVLDEITNALNRKDSVTLVGFGTFVQRHRGARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT Q V I     V FK   +LK  + 
Sbjct: 61 KNPQTGQPVTIKASNTVAFKPGKMLKDAVN 90


>gi|225023835|ref|ZP_03713027.1| hypothetical protein EIKCOROL_00701 [Eikenella corrodens ATCC
          23834]
 gi|224943309|gb|EEG24518.1| hypothetical protein EIKCOROL_00701 [Eikenella corrodens ATCC
          23834]
          Length = 100

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 4  TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T+T+++L   + ++   +S+ D+   V   F EI  +  RGE IKIS F  F ++ K  R
Sbjct: 2  TLTKAELADILVEKVSNISKNDAKEIVELFFEEIRATLERGEEIKISGFGNFQLRDKPQR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN +T +EV I  RRVV F AS  LK  + 
Sbjct: 62 PGRNPKTGKEVPITARRVVTFHASQKLKGMVE 93


>gi|108760828|ref|YP_631695.1| integration host factor subunit beta [Myxococcus xanthus DK 1622]
 gi|27804850|gb|AAO22888.1| hypothetical protein [Myxococcus xanthus]
 gi|108464708|gb|ABF89893.1| integration host factor, beta subunit [Myxococcus xanthus DK 1622]
          Length = 127

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 3/110 (2%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +TRS+L++ I +    + R++    V  +F E+  + + G  I++  F  F V+ + +R 
Sbjct: 1   MTRSELIERIVERATHVPRREVEAIVHAVFEEMSQALIAGRRIELRGFGVFCVRTRRART 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           GRN +T Q V +  RR + F A   L++R+            D   P G 
Sbjct: 61  GRNPKTGQRVSVPARRTLSFAAGKDLRERLNAPPAMAASPVPDT--PPGE 108


>gi|52425144|ref|YP_088281.1| HimA protein [Mannheimia succiniciproducens MBEL55E]
 gi|81691393|sp|Q65TL4|IHFA_MANSM RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|52307196|gb|AAU37696.1| HimA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 98

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 54/92 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ +L  ++ ++ GL++ ++   V   F EI  +  +G  +K+S F  F +++K SR 
Sbjct: 2  TLTKVELADNLIEKHGLNKSEAKALVEDFFEEIRVALEKGNDVKLSGFGNFELREKASRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V +  RRVVVFK    L+ R+  
Sbjct: 62 GRNPKTGESVPVSARRVVVFKPGQKLRARVEK 93


>gi|260062638|ref|YP_003195718.1| DNA-binding protein HU [Robiginitalea biformata HTCC2501]
 gi|88784205|gb|EAR15375.1| DNA-binding protein HU [Robiginitalea biformata HTCC2501]
          Length = 90

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ + G+++  + + + +    +  S  +G  + +  F ++ V ++ +R G
Sbjct: 1  MNKTELIDAMAADAGITKAAAKKALESFLGNVESSLKKGNRVSLVGFGSWSVSRRNAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T + + I  + VV FKA S L   + 
Sbjct: 61 RNPSTGKTIHIPAKNVVKFKAGSELGDAVN 90


>gi|94309668|ref|YP_582878.1| integration host factor subunit beta [Cupriavidus metallidurans
          CH34]
 gi|123383988|sp|Q1LQG7|IHFB_RALME RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|93353520|gb|ABF07609.1| integration host factor beta subunit [Cupriavidus metallidurans
          CH34]
          Length = 135

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV+ ++  F  L  +D+   V T+ + + ++   G  I+I  F +F + ++  RV
Sbjct: 1  MTKSELVEKLAARFPQLLLRDADISVKTILDAMSEALADGHRIEIRGFGSFGLNKRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V +  +RV  FKA   L++R+
Sbjct: 61 GRNPKSGERVLVPEKRVPHFKAGKELRERV 90


>gi|83951656|ref|ZP_00960388.1| integration host factor, beta subunit [Roseovarius nubinhibens
          ISM]
 gi|83836662|gb|EAP75959.1| integration host factor, beta subunit [Roseovarius nubinhibens
          ISM]
          Length = 94

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 57/93 (61%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+ +   L ++D  + V T+FNEI D+  +G  +++  F  F VK++ +R 
Sbjct: 1  MIRSELIQKIADENPHLFQRDVEKIVNTIFNEITDAMAKGNRVELRGFGAFSVKKRDARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V+++ + V  FK   +L+ R+  +
Sbjct: 61 GRNPRTGETVEVEEKHVPFFKTGKLLRDRLNGN 93


>gi|148654111|ref|YP_001281204.1| histone family protein DNA-binding protein [Psychrobacter sp.
           PRwf-1]
 gi|148573195|gb|ABQ95254.1| histone family protein DNA-binding protein [Psychrobacter sp.
           PRwf-1]
          Length = 106

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 62/95 (65%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           ++T+T++D++  +  +FG +R+     V + F+EI D+ V G+ +K+S F  F +K K S
Sbjct: 8   TQTLTKADIIDHLVVKFGFTRQQGRMLVDSFFDEIYDNLVGGKDVKLSGFGNFILKDKKS 67

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T +EV+I  RRVV FKA   L++++ + 
Sbjct: 68  RPGRNPKTGEEVEISARRVVTFKAGQKLRRQVDES 102


>gi|313892973|ref|ZP_07826550.1| DNA-binding protein HU-beta [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313442326|gb|EFR60741.1| DNA-binding protein HU-beta [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 99

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 55/99 (55%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L+ S++++  L++KD+ + V  +F+ + +    G  +++  F TF V+++ +R G
Sbjct: 1   MNKTELIASVAQKTELTKKDAEKAVKAVFDTVAEELAAGGKVQVIGFGTFEVRERAAREG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           RN Q  + + I   +   FKA   LK+++      ++  
Sbjct: 61  RNPQNGKTITIAASKSPAFKAGKGLKEQVNATKAKKRKK 99


>gi|149916117|ref|ZP_01904639.1| integration host factor, beta subunit [Roseobacter sp. AzwK-3b]
 gi|149809972|gb|EDM69821.1| integration host factor, beta subunit [Roseobacter sp. AzwK-3b]
          Length = 94

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I++E   L ++D  R V T+FNEI ++   G  +++  F  F VK++ +R 
Sbjct: 1  MIRSELIQKIAEENPHLYQRDVERIVNTIFNEITNAMAEGNRVELRGFGAFSVKRRDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V ++ + V  FK   +L+ R+  
Sbjct: 61 GRNPRTGEAVYVEEKHVPFFKTGKLLRDRLNG 92


>gi|149911612|ref|ZP_01900224.1| integration host factor alpha subunit [Moritella sp. PE36]
 gi|149805333|gb|EDM65346.1| integration host factor alpha subunit [Moritella sp. PE36]
          Length = 97

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 53/91 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+ +++  + GLS+++S   V   F EI  S    E +KIS F  F ++ KG R 
Sbjct: 2  ALTKADIAETLFNDVGLSKRESKEMVEAFFEEIRLSLEVNEQVKISGFGNFDLRDKGERP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +++ I  RRVV FK    LK ++ 
Sbjct: 62 GRNPKTGEDIPITARRVVTFKPGQKLKAKVE 92


>gi|121602866|ref|YP_988943.1| integration host factor subunit alpha [Bartonella bacilliformis
           KC583]
 gi|166918498|sp|A1USJ0|IHFA_BARBK RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|120615043|gb|ABM45644.1| integration host factor, alpha subunit [Bartonella bacilliformis
           KC583]
          Length = 103

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 46/100 (46%), Positives = 68/100 (68%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            +T+TR+DL  ++ ++ GLS  +S   V  + +EI DS V+GE +K+S FATF V+ K  
Sbjct: 3   GRTVTRADLASAVCRKVGLSYTESAALVELILSEISDSLVKGEMVKLSCFATFQVRSKSR 62

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           R+GRN +T  E  I PRRVV FKA++ILK+RI+D    ++
Sbjct: 63  RIGRNPKTGIEAPIPPRRVVTFKAANILKQRILDVHCAKQ 102


>gi|13472793|ref|NP_104360.1| integration host factor subunit beta [Mesorhizobium loti
          MAFF303099]
 gi|260460500|ref|ZP_05808751.1| integration host factor, beta subunit [Mesorhizobium
          opportunistum WSM2075]
 gi|319781467|ref|YP_004140943.1| integration host factor, subunit beta [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
 gi|21362613|sp|Q98GS0|IHFB_RHILO RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|14023540|dbj|BAB50146.1| integration host factor beta chain [Mesorhizobium loti
          MAFF303099]
 gi|259033605|gb|EEW34865.1| integration host factor, beta subunit [Mesorhizobium
          opportunistum WSM2075]
 gi|317167355|gb|ADV10893.1| integration host factor, beta subunit [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
          Length = 94

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I+ +   L  +D    V  +F+EI D+   G  +++  F  F VK + +R 
Sbjct: 1  MIKSELVQIIATRNPHLFLRDVENIVGAIFDEITDALAEGNRVELRGFGAFSVKNRPART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V+++ + V  FK    L++R+   
Sbjct: 61 GRNPRTGESVEVEEKWVPFFKTGKELRERLNGG 93


>gi|289671205|ref|ZP_06492280.1| integration host factor subunit beta [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 103

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 1/103 (0%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L++ +++    L   D    V +L   +  +   G+ I+I  F +F +  +  R+
Sbjct: 1   MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDWIEIRGFGSFSLHYRPPRL 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN +T + V +  + V  FK    L++R+   +     +  D
Sbjct: 61  GRNPKTGESVALPGKHVPHFKPGKELRERVSSVVPVDMSDATD 103


>gi|89069006|ref|ZP_01156387.1| integration host factor beta subunit [Oceanicola granulosus
          HTCC2516]
 gi|89045375|gb|EAR51440.1| integration host factor beta subunit [Oceanicola granulosus
          HTCC2516]
          Length = 93

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ I+     L ++D  + V T+F+ I  +   G+ +++  F  F VK++ +R+
Sbjct: 1  MIRSELIQKIADDNPHLYQRDVEKIVNTVFDRIIGAMANGDRVELRGFGAFSVKRREARM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V+++ + V  FK   +L+ R+ D
Sbjct: 61 GRNPRTGEAVEVEEKHVPFFKTGKLLRDRLND 92


>gi|298208491|ref|YP_003716670.1| probable DNA-binding protein HU [Croceibacter atlanticus
          HTCC2559]
 gi|83848414|gb|EAP86283.1| probable DNA-binding protein HU [Croceibacter atlanticus
          HTCC2559]
          Length = 90

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+ +++++ G+S+  + + + +    I     +G+ I +  F ++ V ++ +R G
Sbjct: 1  MNKSDLIDAMAEDAGVSKAAAKKALESFLGHIEKGLKKGDRISLVGFGSWSVSKRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI  + VV FKA S L+K + 
Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGSDLQKAVN 90


>gi|297568841|ref|YP_003690185.1| histone family protein DNA-binding protein [Desulfurivibrio
          alkaliphilus AHT2]
 gi|296924756|gb|ADH85566.1| histone family protein DNA-binding protein [Desulfurivibrio
          alkaliphilus AHT2]
          Length = 95

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 56/92 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++DL++ + +   LS+  +T  V    +   DS   GE + +S F  F VKQK SR 
Sbjct: 2  TLTKADLIQEVYQRHNLSKSQATEVVEIFLSVAKDSLQEGEDLLLSGFGKFSVKQKNSRR 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN QT +E+ + PRRV+ FK S +L++R+  
Sbjct: 62 GRNPQTGEELMLAPRRVITFKPSGLLRQRVNG 93


>gi|114328684|ref|YP_745841.1| integration host factor subunit beta [Granulibacter bethesdensis
           CGDNIH1]
 gi|122326362|sp|Q0BQI4|IHFB_GRABC RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|114316858|gb|ABI62918.1| integration host factor beta-subunit [Granulibacter bethesdensis
           CGDNIH1]
          Length = 107

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 62/105 (59%), Gaps = 1/105 (0%)

Query: 5   ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+ S+ +    L+ +D    V+T+F+EI ++  RG  +++  F  F +K++ +RV
Sbjct: 1   MTKSELIASLKADNPHLTERDVETIVSTIFDEISNALARGARVELRGFGAFTIKRRDARV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT 108
           GRN +T + V +D + V  FKA   L++R+ +  R    + D  +
Sbjct: 61  GRNPRTGETVSVDEKVVPFFKAGKELRERVNNGTRKNGGSADAAS 105


>gi|304415426|ref|ZP_07396077.1| HU DNA-binding transcriptional regulator alpha subunit
          [Candidatus Regiella insecticola LSR1]
 gi|304282725|gb|EFL91237.1| HU DNA-binding transcriptional regulator alpha subunit
          [Candidatus Regiella insecticola LSR1]
          Length = 141

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 46/94 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  ++++ G S+ D+   V  + + I ++   GE ++I  F TF   ++ +R G
Sbjct: 1  MNKTQLIDKVAEKIGSSKTDARAAVDAILDSITEALEEGEQMQIVGFGTFKTSKRQARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN QT  E++I    V  F     LK  +     
Sbjct: 61 RNPQTGAEIQIPATTVATFTVGKELKDAVKSSSE 94


>gi|120435797|ref|YP_861483.1| histone-like DNA-binding protein [Gramella forsetii KT0803]
 gi|117577947|emb|CAL66416.1| histone-like bacterial DNA-binding protein [Gramella forsetii
          KT0803]
          Length = 90

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ ++++  G+S+  + + + +    +  S  +G+ + +  F ++ V ++ +R G
Sbjct: 1  MNKTDLIDAMAENAGISKAAAKKALESFLENVEKSLKKGDRVSLVGFGSWSVSKRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI  + VV FKA + L+K + 
Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGADLQKAVN 90


>gi|158321657|ref|YP_001514164.1| histone family protein DNA-binding protein [Alkaliphilus
          oremlandii OhILAs]
 gi|158141856|gb|ABW20168.1| histone family protein DNA-binding protein [Alkaliphilus
          oremlandii OhILAs]
          Length = 92

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  ++++  L++KD+   + +    + ++   G+ +++  F TF V+++  R G
Sbjct: 1  MNKAELVAKMAEKAQLTKKDTELALNSFMETVEEALATGDKVQLVGFGTFEVRERKPRQG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95
          RN +  ++ + I   +  VFKA   LK+++  
Sbjct: 61 RNPRNPEQVIDIPASKAPVFKAGKTLKEQMNK 92


>gi|332704210|ref|ZP_08424298.1| histone family protein DNA-binding protein [Desulfovibrio
          africanus str. Walvis Bay]
 gi|332554359|gb|EGJ51403.1| histone family protein DNA-binding protein [Desulfovibrio
          africanus str. Walvis Bay]
          Length = 90

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  IS++  +S+ D+ R +    + +  + V    + ++ F TF V+++  R G
Sbjct: 1  MTKADLVAKISEKAAISKADAERSLNAFLDAVGSTLVGEGKLTLTGFGTFAVEERKERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E+KI   +VV F+   +LK  + 
Sbjct: 61 RNPRTGEEIKIPATKVVKFRPGKLLKDAVK 90


>gi|46201963|ref|ZP_00054041.2| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magnetotacticum MS-1]
          Length = 91

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 44/91 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLV  +++  GLS+  +   +   F  I  +   G+ +++  F +F V Q+ ++ G
Sbjct: 1  MNKQDLVNKVAELSGLSKAAADNVIDATFAAITSALKAGDDVRLVGFGSFSVTQRAAKEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T   +KI   +   F A   LK  +  
Sbjct: 61 RNPRTGATIKIAASKAPKFTAGKGLKDAVNG 91


>gi|289450416|ref|YP_003475021.1| DNA-binding protein HU [Clostridiales genomosp. BVAB3 str.
          UPII9-5]
 gi|289184963|gb|ADC91388.1| DNA-binding protein HU [Clostridiales genomosp. BVAB3 str.
          UPII9-5]
          Length = 91

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R+DL+ SI+K   L++K S   +  + N I D+ ++G+ + ++ F TF V+ + +R G
Sbjct: 1  MKRNDLIASIAKAANLTKKSSEEALDAVLNTISDALIKGDKVILTGFGTFEVRARAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T  E+ I   +   FK    LK+++  
Sbjct: 61 RNPATKTEIMIPASKSPAFKPGKRLKEQVNK 91


>gi|315634292|ref|ZP_07889579.1| integration host factor subunit alpha [Aggregatibacter segnis
          ATCC 33393]
 gi|315476882|gb|EFU67627.1| integration host factor subunit alpha [Aggregatibacter segnis
          ATCC 33393]
          Length = 98

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 55/92 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ +L +++ ++F LS++++   V + F EI  +   G  +K+S F  F ++ K SR 
Sbjct: 2  TLTKVELAENLIEKFHLSKREAKDLVESFFEEIRIALETGNDVKLSGFGNFELRDKSSRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V +  RRVVVFK    L+ R+  
Sbjct: 62 GRNPKTGESVPVSARRVVVFKPGQKLRNRVEK 93


>gi|300865210|ref|ZP_07110027.1| nucleoid protein Hbs [Oscillatoria sp. PCC 6506]
 gi|300336775|emb|CBN55177.1| nucleoid protein Hbs [Oscillatoria sp. PCC 6506]
          Length = 95

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +++++  +++K +   ++     I ++   G+ + +  F +F  +++ +R G
Sbjct: 1  MNKGELVDAVAEKASVTKKQADAVLSAALESIMEAVSDGDKVTLVGFGSFESRERKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T ++++I   +V  F A  + K R+ 
Sbjct: 61 RNPKTGEKMEIPATKVPAFSAGKLFKDRVA 90


>gi|260914041|ref|ZP_05920514.1| integration host factor subunit alpha [Pasteurella dagmatis ATCC
          43325]
 gi|260631674|gb|EEX49852.1| integration host factor subunit alpha [Pasteurella dagmatis ATCC
          43325]
          Length = 98

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ +L +++ ++  L+++D+   V   F EI  +   GE +K+S F  F ++ K SR 
Sbjct: 2  TLTKVELAENLIEKLNLNKRDAKELVENFFEEIRVALETGEDVKLSGFGNFELRDKASRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V +  RRVV FK    L+ R+  
Sbjct: 62 GRNPKTGESVPVSARRVVSFKPGQKLRTRVEK 93


>gi|228969379|ref|ZP_04130226.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str.
          T04001]
 gi|228790341|gb|EEM38081.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str.
          T04001]
          Length = 90

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L K ++++  L++K++      + + I  +    E ++I  F TF V+++ +R G
Sbjct: 1  MNKTELTKVVAEKAELTQKEAAAATQAVLDTITTALANEEKVQILRFGTFEVRERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I   +   FKA   LK  + 
Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELKDAVK 90


>gi|294013226|ref|YP_003546686.1| integration host factor alpha subunit [Sphingobium japonicum
          UT26S]
 gi|292676556|dbj|BAI98074.1| integration host factor alpha subunit [Sphingobium japonicum
          UT26S]
          Length = 98

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 37/93 (39%), Positives = 61/93 (65%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+DL +S+++  GLSR ++   + ++   +  +  RGE +KISSF TF ++ K  R+
Sbjct: 6  TLTRADLAESVNRHIGLSRAEAATLIESILEHMSAALERGENVKISSFGTFVLRDKTQRM 65

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T  EV I+PRRV+ F+AS  ++ R+   
Sbjct: 66 GRNPKTGVEVPIEPRRVLTFRASQTMRDRVASA 98


>gi|121727102|ref|ZP_01680276.1| integration host factor, beta subunit [Vibrio cholerae V52]
 gi|121630480|gb|EAX62872.1| integration host factor, beta subunit [Vibrio cholerae V52]
          Length = 92

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S L++ + +++  LS K+    V  +   +  +   GE I+I  F +F +  +  RV
Sbjct: 1  MTKSXLIERLCAEQTHLSAKEIEDAVKNILEHMASTLEAGERIEIRGFGSFSLHYREPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L++R+ 
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91


>gi|56750450|ref|YP_171151.1| DNA-binding protein HU [Synechococcus elongatus PCC 6301]
 gi|81299917|ref|YP_400125.1| nucleoid protein Hbs [Synechococcus elongatus PCC 7942]
 gi|56685409|dbj|BAD78631.1| DNA binding protein HU [Synechococcus elongatus PCC 6301]
 gi|81168798|gb|ABB57138.1| bacterial nucleoid protein Hbs [Synechococcus elongatus PCC 7942]
          Length = 91

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+  ++    +++K +   ++   + I ++   G+ + +  F +F  + + +R G
Sbjct: 1  MNKGDLIDKVADRAHVTKKQAEHIISAALDTIIEAVSGGDKVTLVGFGSFEPRDRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T Q++KI   +V  F A  + K+++
Sbjct: 61 RNPKTGQKMKIPATKVPAFSAGKLFKEKV 89


>gi|33865121|ref|NP_896680.1| DNA binding protein HU [Synechococcus sp. WH 8102]
 gi|33638805|emb|CAE07102.1| DNA binding protein HU [Synechococcus sp. WH 8102]
          Length = 91

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ D +  V      I DS V G+ + I  F +F  +++ +R G
Sbjct: 1  MNKADLVNLVAARTELTKTDVSMVVDAAIETIIDSVVEGKKVSILGFGSFEPRERSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T +++ I  +RV  F A  + K R+  
Sbjct: 61 LNPKTGEKIAIPAKRVPAFTAGKMFKDRVQG 91


>gi|119505041|ref|ZP_01627117.1| hypothetical protein MGP2080_15169 [marine gamma proteobacterium
          HTCC2080]
 gi|119459023|gb|EAW40122.1| hypothetical protein MGP2080_15169 [marine gamma proteobacterium
          HTCC2080]
          Length = 98

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRS+L++ I+ ++  LS KD    V  + + + ++   GE I+I  F +F +  +  R 
Sbjct: 1  MTRSELIEKIASQQSQLSTKDVELAVKLMIDHMAETLSSGERIEIRGFGSFSLHYREPRQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T   V ++ + V  FK    L++R+   ++ 
Sbjct: 61 GRNPKTGDSVALEGKHVPHFKPGKELRERVNRSLKA 96


>gi|315122317|ref|YP_004062806.1| integration host factor subunit alpha [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495719|gb|ADR52318.1| integration host factor subunit alpha [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 110

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 81/107 (75%), Positives = 93/107 (86%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           M+KTITRSDL KSISK FGLSRKDST FVTT+FNEICDSA RGEAIKISSFATF V++KG
Sbjct: 1   MNKTITRSDLAKSISKNFGLSRKDSTFFVTTVFNEICDSAARGEAIKISSFATFRVRKKG 60

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
            RVGRNLQTNQEV I  RRV+VFKAS +LKKRIMD++   +C ++D+
Sbjct: 61  PRVGRNLQTNQEVMIGSRRVMVFKASDVLKKRIMDELDNLECKEEDL 107


>gi|258645647|ref|ZP_05733116.1| DNA-binding protein HU [Dialister invisus DSM 15470]
 gi|260403011|gb|EEW96558.1| DNA-binding protein HU [Dialister invisus DSM 15470]
          Length = 100

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   +++KDS + V  + + I  + V+G+ +++  F TF V+Q+ +R G
Sbjct: 1  MNKTELISAVAQTAEMTKKDSEKAVKAVIDVISQALVKGDKVQLIGFGTFEVRQRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T + +KI   +   ++ S  LK+R+ 
Sbjct: 61 HNPATQKAIKIPASKSPAWRVSKQLKERVN 90


>gi|188577593|ref|YP_001914522.1| integration host factor subunit alpha [Xanthomonas oryzae pv.
          oryzae PXO99A]
 gi|188522045|gb|ACD59990.1| integration host factor, alpha subunit [Xanthomonas oryzae pv.
          oryzae PXO99A]
          Length = 92

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 50/85 (58%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          + + +  E GL+++++  FV   F+ + D+  +G  +K+S F  F +++K  R GRN +T
Sbjct: 1  MAERLFDEVGLNKREAKEFVDAFFDVLRDALEQGRQVKLSGFGNFDLRRKNQRPGRNPKT 60

Query: 70 NQEVKIDPRRVVVFKASSILKKRIM 94
           +E+ I  R VV F+    LK+R+ 
Sbjct: 61 GEEIPISARTVVTFRPGQKLKERVE 85


>gi|291166397|gb|EFE28443.1| DNA-binding protein HU [Filifactor alocis ATCC 35896]
          Length = 93

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  ++++  L++KD    +    + + D+ V GE +++  F +F  +++  R G
Sbjct: 1  MNKAELVTKMAEKCNLTKKDMEVALNAFMSCVEDALVAGEKVQLVGFGSFETRERAEREG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIM 94
          RN ++ +E +KI   +  VFKA   LK+++ 
Sbjct: 61 RNPRSPEEVIKIPASKAPVFKAGKGLKEKVN 91


>gi|86356056|ref|YP_467948.1| integration host factor subunit beta [Rhizobium etli CFN 42]
 gi|116250186|ref|YP_766024.1| integration host factor subunit beta [Rhizobium leguminosarum bv.
          viciae 3841]
 gi|190890071|ref|YP_001976613.1| integration host factor beta-subunit protein [Rhizobium etli CIAT
          652]
 gi|209547655|ref|YP_002279572.1| integration host factor subunit beta [Rhizobium leguminosarum bv.
          trifolii WSM2304]
 gi|241202813|ref|YP_002973909.1| integration host factor subunit beta [Rhizobium leguminosarum bv.
          trifolii WSM1325]
 gi|123384964|sp|Q1MM94|IHFB_RHIL3 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|123765870|sp|Q2KD65|IHFB_RHIEC RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709801|sp|B3PZE1|IHFB_RHIE6 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709802|sp|B5ZN05|IHFB_RHILW RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|86280158|gb|ABC89221.1| integration host factor beta-subunit protein [Rhizobium etli CFN
          42]
 gi|115254834|emb|CAK05908.1| putative integration host factor beta subunit [Rhizobium
          leguminosarum bv. viciae 3841]
 gi|190695350|gb|ACE89435.1| integration host factor beta-subunit protein [Rhizobium etli CIAT
          652]
 gi|209533411|gb|ACI53346.1| integration host factor, beta subunit [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|240856703|gb|ACS54370.1| integration host factor, beta subunit [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 99

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ ++     L  +D    V  + +EI D+   G  +++  F  F VK + SR 
Sbjct: 1  MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T   V ++ + V  FK    L++R+ 
Sbjct: 61 GRNPRTGDTVFVEEKWVPFFKTGKELRERLN 91


>gi|148260716|ref|YP_001234843.1| integration host factor, beta subunit [Acidiphilium cryptum JF-5]
 gi|326403912|ref|YP_004283994.1| integration host factor beta subunit [Acidiphilium multivorum
          AIU301]
 gi|146402397|gb|ABQ30924.1| integration host factor, beta subunit [Acidiphilium cryptum JF-5]
 gi|325050774|dbj|BAJ81112.1| integration host factor beta subunit [Acidiphilium multivorum
          AIU301]
          Length = 113

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 56/95 (58%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRS+L+ +++ +   L+  D  R VT +F+E+  +   G  +++  F  F VKQ+ +R 
Sbjct: 1  MTRSELIAALAADHPHLTLADVERIVTAMFDEMTATLAAGGRVELRGFGAFSVKQRQARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T + VK+D + V  F+A   L++ +   M+
Sbjct: 61 GRNPRTGETVKVDEKTVPFFRAGRELREMVNAGMK 95


>gi|302878589|ref|YP_003847153.1| histone family protein DNA-binding protein [Gallionella
          capsiferriformans ES-2]
 gi|302581378|gb|ADL55389.1| histone family protein DNA-binding protein [Gallionella
          capsiferriformans ES-2]
          Length = 91

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +L+ +++ + G ++  + + +  L   I ++  +G++I +  F TF V+++ +R G
Sbjct: 1  MNRKELIDALATKTGSTKIVAEQNIAALIEVIGETLAKGDSISLVGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T  E+KI   +V  FK  + LK  +  
Sbjct: 61 RNPKTGAELKIAASKVPAFKPGATLKSAVNK 91


>gi|46580205|ref|YP_011013.1| DNA-binding protein HU [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|120602409|ref|YP_966809.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris DP4]
 gi|46449622|gb|AAS96272.1| DNA-binding protein HU [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|120562638|gb|ABM28382.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris DP4]
 gi|311233808|gb|ADP86662.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris RCH1]
          Length = 90

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  I+ +  L++  + R +    + + D       + ++ F TF V+ +  R G
Sbjct: 1  MTKADLVDKIAAKANLTKASAERSLNAFLDAVKDVLASEGKLTLTGFGTFAVESRQERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  E+KI   +VV F+    LK  + 
Sbjct: 61 RNPRTGAEIKIPASKVVKFRPGKTLKDAVK 90


>gi|21231632|ref|NP_637549.1| integration host factor subunit beta [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768246|ref|YP_243008.1| integration host factor subunit beta [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188991382|ref|YP_001903392.1| integration host factor subunit beta [Xanthomonas campestris pv.
           campestris str. B100]
 gi|24418454|sp|Q8P8P6|IHFB_XANCP RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|81305779|sp|Q4UVD5|IHFB_XANC8 RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|226709818|sp|B0RSA5|IHFB_XANCB RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|21113325|gb|AAM41473.1| integration host factor beta subunit [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573578|gb|AAY48988.1| integration host factor beta subunit [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167733142|emb|CAP51340.1| Integration host factor beta subunit [Xanthomonas campestris pv.
           campestris]
          Length = 103

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 1/103 (0%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L++ +++    L   D    V +L   +  +   G+ I+I  F +F +  +  R+
Sbjct: 1   MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           GRN +T + V +  + V  FK    L++R+   +     +  D
Sbjct: 61  GRNPKTGESVALPGKHVPHFKPGKELRERVSSVVPVDMVDAAD 103


>gi|83310091|ref|YP_420355.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1]
 gi|82944932|dbj|BAE49796.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum
           AMB-1]
          Length = 110

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 45/91 (49%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +S+L+ +++    +++ D+   +  +F  +  +   G+ +++  F +F V  + +R G
Sbjct: 19  MNKSELIAAVADGANMTKADAASAIDAVFEAVTAAMKSGDDVRLVGFGSFSVSARPAREG 78

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN QT + + I   +   F A   LK  I  
Sbjct: 79  RNPQTGKTLTIAASKSAKFTAGKSLKDTING 109


>gi|302381902|ref|YP_003817725.1| integration host factor subunit beta [Brevundimonas subvibrioides
          ATCC 15264]
 gi|302192530|gb|ADL00102.1| integration host factor, beta subunit [Brevundimonas
          subvibrioides ATCC 15264]
          Length = 96

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ ++ +   L+  +  R V  +   + D+   G  +++  F  F V+ + +R 
Sbjct: 1  MIKSELIEKLAAENTHLTHAEVERVVNVVLGRMTDAMASGGRVELRGFGAFSVRSRPARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V +  + V  FK+   L++R+   
Sbjct: 61 GRNPRTGETVDVPAKAVPFFKSGKELRERLNAS 93


>gi|331005948|ref|ZP_08329294.1| Integration host factor beta subunit [gamma proteobacterium
           IMCC1989]
 gi|330420243|gb|EGG94563.1| Integration host factor beta subunit [gamma proteobacterium
           IMCC1989]
          Length = 102

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 1/99 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L++ ++     LS KD    V ++   +      GE I++  F +F +  +  R+
Sbjct: 1   MTKSELIERMTDNQEQLSVKDVELAVKSMLEHMSQVLASGERIEVRGFGSFSLHYREPRM 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           GRN +T + V++  + V  FK    ++ R+ + +   K 
Sbjct: 61  GRNPKTGEMVELKGKYVPHFKPGKEMRDRVNESIHQEKS 99


>gi|294624736|ref|ZP_06703402.1| integration host factor beta subunit [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294664332|ref|ZP_06729697.1| integration host factor beta subunit [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292600970|gb|EFF45041.1| integration host factor beta subunit [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605898|gb|EFF49184.1| integration host factor beta subunit [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 113

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L++ +++    L   D    V +L   +  +   G+ I+I  F +F +  +  R+
Sbjct: 11  MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 70

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN +T + V +  + V  FK    L++R+
Sbjct: 71  GRNPKTGESVALPGKHVPHFKPGKELRERV 100


>gi|167646994|ref|YP_001684657.1| integration host factor subunit alpha [Caulobacter sp. K31]
 gi|189044696|sp|B0T0T0|IHFA_CAUSK RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|167349424|gb|ABZ72159.1| integration host factor, alpha subunit [Caulobacter sp. K31]
          Length = 100

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 63/96 (65%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+TR+DL +++ +E GL+R+D    V    + + ++  +GE +K+S F  F V+ K +R+
Sbjct: 5   TLTRADLCEAVHEEVGLTRQDCAGLVERTLDLVAEALEKGETVKLSGFGVFQVRDKRARM 64

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           GRN +T +  +I+PRRV+ F+AS ++K RI   + G
Sbjct: 65  GRNPKTGEPAEIEPRRVIGFRASQVMKARIDRALGG 100


>gi|254491635|ref|ZP_05104814.1| DNA-binding protein HU [Methylophaga thiooxidans DMS010]
 gi|224463113|gb|EEF79383.1| DNA-binding protein HU [Methylophaga thiooxydans DMS010]
          Length = 95

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 52/93 (55%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          ++ + + +L+ +++    +S+  + + V  + + +  +  +G+ + +  F TF V+++ +
Sbjct: 3  NQAVNKYELIDAVAAAADISKAKAAQAVDGVTSAVTKALSKGDQVTLVGFGTFSVRERAA 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          R GRN +T +E+KI   ++  FKA   LK  + 
Sbjct: 63 RTGRNPRTGEEIKIAAAKIPAFKAGKALKDAVN 95


>gi|304569686|ref|YP_009985.2| DNA-binding protein HU [Desulfovibrio vulgaris str. Hildenborough]
          Length = 101

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 4   TITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           ++T+++LV+ I  + GL ++  +   +      + D+   GE++  + F +F V  + +R
Sbjct: 10  SMTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAAR 69

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            GRN +T +E+ I   +VV F    +LK  + 
Sbjct: 70  KGRNPRTGEEIVIPAGKVVKFTPGKLLKDAVK 101


>gi|294787803|ref|ZP_06753047.1| integration host factor, alpha subunit [Simonsiella muelleri ATCC
          29453]
 gi|294484096|gb|EFG31779.1| integration host factor, alpha subunit [Simonsiella muelleri ATCC
          29453]
          Length = 100

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 4  TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T+T+++L   + ++   +S+ D+   V   F EI  +   GE IKIS F  F ++ K  R
Sbjct: 2  TLTKAELADILVEKVSSVSKNDAKEIVELFFEEIRTTLESGEEIKISGFGNFQLRDKPQR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN +T +EV I  RRVV F AS  LK  + 
Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLKGMVE 93


>gi|126657689|ref|ZP_01728843.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110]
 gi|126620906|gb|EAZ91621.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110]
          Length = 93

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 49/93 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV  IS +  L++K+++  +  L + I ++   G+ + +  F TF  + +  R G
Sbjct: 1  MNKEELVNMISAKTRLTKKETSHILDALTDTIMETVADGDKVVLVGFGTFEPRDRKERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           N QT Q + I    V  F A  + K+++++ +
Sbjct: 61 MNPQTGQPITIPATTVPAFSAGKLFKEKVVESL 93


>gi|238022788|ref|ZP_04603214.1| hypothetical protein GCWU000324_02699 [Kingella oralis ATCC 51147]
 gi|237865991|gb|EEP67127.1| hypothetical protein GCWU000324_02699 [Kingella oralis ATCC 51147]
          Length = 120

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 2   SKTITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           + T+T+++L   + ++   +S+ D+   V   F EI  +  RGE IKIS F  F ++ K 
Sbjct: 22  NMTLTKAELADILVEKVSSISKHDAKEIVELFFEEIRTTLERGEEIKISGFGNFQLRDKP 81

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            R GRN +T +EV I  RRVV F AS  LK  + 
Sbjct: 82  QRPGRNPKTGEEVAITARRVVTFHASQKLKGMVE 115


>gi|307294086|ref|ZP_07573930.1| integration host factor, alpha subunit [Sphingobium
          chlorophenolicum L-1]
 gi|306880237|gb|EFN11454.1| integration host factor, alpha subunit [Sphingobium
          chlorophenolicum L-1]
          Length = 98

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 37/93 (39%), Positives = 61/93 (65%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+DL +S+++  GLSR ++   + ++   +  +  RGE +KISSF TF ++ K  R+
Sbjct: 6  TLTRADLAESVNRHIGLSRAEAATLIESILEHMSAALERGENVKISSFGTFVLRDKTQRM 65

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T  EV I+PRRV+ F+AS  ++ R+   
Sbjct: 66 GRNPKTGVEVPIEPRRVLTFRASQTMRDRVASA 98


>gi|126727662|ref|ZP_01743494.1| integration host factor beta subunit [Rhodobacterales bacterium
          HTCC2150]
 gi|126703078|gb|EBA02179.1| integration host factor beta subunit [Rhodobacterales bacterium
          HTCC2150]
          Length = 94

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+LV+ I+ +   L ++D  R V TLF EI ++   G+ +++  F  F VKQ+ +R+
Sbjct: 1  MIRSELVQKIADENPQLFQRDVERIVNTLFEEIINALADGDRVELRGFGAFSVKQRDARI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN ++ + V+++ + V  FK   +L+ R+  
Sbjct: 61 GRNPRSGESVEVEAKNVPFFKTGKLLRDRLNG 92


>gi|326790215|ref|YP_004308036.1| histone family protein DNA-binding protein [Clostridium
          lentocellum DSM 5427]
 gi|326540979|gb|ADZ82838.1| histone family protein DNA-binding protein [Clostridium
          lentocellum DSM 5427]
          Length = 92

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 50/92 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV ++S +  +S+KD+ + +    + + +    G  I++  F TF V ++  RVG
Sbjct: 1  MNKSELVAAMSAKAEISKKDAEKALKAFEDVVMEELQAGGKIQLVGFGTFEVTERKPRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +TN+E+ I   +   FK    LK  +  +
Sbjct: 61 RNPKTNEEMPIPGGKAPKFKPGKALKDVVKGN 92


>gi|103486903|ref|YP_616464.1| integration host factor, alpha subunit [Sphingopyxis alaskensis
          RB2256]
 gi|122985051|sp|Q1GT91|IHFA_SPHAL RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|98976980|gb|ABF53131.1| integration host factor, alpha subunit [Sphingopyxis alaskensis
          RB2256]
          Length = 97

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 59/92 (64%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+D+   I+++ GLSR +S   V ++ + + D+   G+ +KIS F TF ++ K  R+
Sbjct: 5  TLTRADIASRINQQIGLSRNESAAIVESILDHMSDALAAGQNVKISGFGTFVLRDKAQRI 64

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T  EV I PRRV+ F+AS  ++ R+  
Sbjct: 65 GRNPKTGVEVPILPRRVMTFRASQSMRARVAG 96


>gi|311233014|gb|ADP85868.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris
           RCH1]
          Length = 132

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 4   TITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           ++T+++LV+ I  + GL ++  +   +      + D+   GE++  + F +F V  + +R
Sbjct: 41  SMTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAAR 100

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            GRN +T +E+ I   +VV F    +LK  + 
Sbjct: 101 KGRNPRTGEEIVIPAGKVVKFTPGKLLKDAVK 132


>gi|21243032|ref|NP_642614.1| integration host factor subunit beta [Xanthomonas axonopodis pv.
          citri str. 306]
 gi|24418455|sp|Q8PK78|IHFB_XANAC RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|21108541|gb|AAM37150.1| integration host factor beta subunit [Xanthomonas axonopodis pv.
          citri str. 306]
          Length = 103

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ +++    L   D    V +L   +  +   G+ I+I  F +F +  +  R+
Sbjct: 1  MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  + V  FK    L++R+
Sbjct: 61 GRNPKTGESVALPGKHVPHFKPGKELRERV 90


>gi|115350978|ref|YP_772817.1| integration host factor subunit beta [Burkholderia ambifaria AMMD]
 gi|134295080|ref|YP_001118815.1| integration host factor subunit beta [Burkholderia vietnamiensis
           G4]
 gi|170698414|ref|ZP_02889487.1| integration host factor, beta subunit [Burkholderia ambifaria
           IOP40-10]
 gi|171316179|ref|ZP_02905403.1| integration host factor, beta subunit [Burkholderia ambifaria
           MEX-5]
 gi|172059983|ref|YP_001807635.1| integration host factor subunit beta [Burkholderia ambifaria
           MC40-6]
 gi|122323724|sp|Q0BH90|IHFB_BURCM RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|226709772|sp|B1YV36|IHFB_BURA4 RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|226709784|sp|A4JCH7|IHFB_BURVG RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|115280966|gb|ABI86483.1| integration host factor, beta subunit [Burkholderia ambifaria AMMD]
 gi|134138237|gb|ABO53980.1| integration host factor, beta subunit [Burkholderia vietnamiensis
           G4]
 gi|170136667|gb|EDT04922.1| integration host factor, beta subunit [Burkholderia ambifaria
           IOP40-10]
 gi|171098688|gb|EDT43483.1| integration host factor, beta subunit [Burkholderia ambifaria
           MEX-5]
 gi|171992500|gb|ACB63419.1| integration host factor, beta subunit [Burkholderia ambifaria
           MC40-6]
          Length = 107

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + D+  +G  I+I  F +F + ++ +RV
Sbjct: 1   MTKSELVAQLALRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           GRN ++ ++V++  + V  FK    L++R+ D   G     DD 
Sbjct: 61  GRNPKSGEKVQVPEKFVPHFKPGKELRERV-DGRAGEPLKADDP 103


>gi|114776313|ref|ZP_01451358.1| integration host factor, alpha subunit [Mariprofundus
          ferrooxydans PV-1]
 gi|114553143|gb|EAU55541.1| integration host factor, alpha subunit [Mariprofundus
          ferrooxydans PV-1]
          Length = 94

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 61/94 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++ + + +  GL++K+S   V ++ + I DS  RGE +K+S F  F V++K +R G
Sbjct: 1  MTKAEIARIVHERVGLTKKESAEIVESVLDVIRDSLERGENVKVSGFGHFMVREKHARRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T  ++ I+PR VV F+AS +LK ++ +   
Sbjct: 61 RNPKTGTDITIEPRSVVTFRASPLLKDKLAEATE 94


>gi|121604539|ref|YP_981868.1| histone family protein DNA-binding protein [Polaromonas
          naphthalenivorans CJ2]
 gi|120593508|gb|ABM36947.1| histone family protein DNA-binding protein [Polaromonas
          naphthalenivorans CJ2]
          Length = 90

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I++   +S+  +TR + +  + +  +  +G ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIAQNADISKAAATRALESTISAVKATLKKGGSVSLVGFGTFAVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   +V  F+    LK  + 
Sbjct: 61 RNPRTGDAIKIKAAKVPKFRPGKALKDALN 90


>gi|187478614|ref|YP_786638.1| DNA-binding protein Hu-beta [Bordetella avium 197N]
 gi|115423200|emb|CAJ49731.1| DNA-binding protein Hu-beta [Bordetella avium 197N]
          Length = 90

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+ +  +S+  + R +  L   +  +  +G  + +  F TF V  + +R G
Sbjct: 1  MNKTELIDHIASKADISKAAAGRTLDALIGAVKTTLKKGGTVTLVGFGTFAVSSRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + +KI   +V  F+    LK  + 
Sbjct: 61 RNPRTGETIKIKKAKVPKFRPGKALKDAVN 90


>gi|71736668|ref|YP_275803.1| integration host factor subunit beta [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|123775050|sp|Q48FN3|IHFB_PSE14 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|71557221|gb|AAZ36432.1| integration host factor, beta subunit [Pseudomonas syringae pv.
          phaseolicola 1448A]
          Length = 98

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I    GL S KD    + T+  ++      G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T + V +D + V  FK    L+ R+ +D  
Sbjct: 61 GRNPKTGRSVSLDGKFVPHFKPGKELRDRVNEDEE 95


>gi|253998814|ref|YP_003050877.1| integration host factor subunit beta [Methylovorus sp. SIP3-4]
 gi|313200901|ref|YP_004039559.1| integration host factor subunit beta [Methylovorus sp. MP688]
 gi|253985493|gb|ACT50350.1| integration host factor, beta subunit [Methylovorus sp. SIP3-4]
 gi|312440217|gb|ADQ84323.1| integration host factor, beta subunit [Methylovorus sp. MP688]
          Length = 94

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ +++  F  L  KD+   V  + + + D+   GE I+I  F +F +  +  R+
Sbjct: 1  MTKSELIANLAARFPQLVVKDAELSVKAIIDSMADNLASGERIEIRGFGSFSLNYRPPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  +V++  + V  FKA   L++R+
Sbjct: 61 GRNPKTGSKVQVPEKYVPHFKAGKELRERV 90


>gi|114327679|ref|YP_744836.1| integration host factor subunit alpha [Granulibacter bethesdensis
          CGDNIH1]
 gi|114315853|gb|ABI61913.1| integration host factor alpha-subunit [Granulibacter bethesdensis
          CGDNIH1]
          Length = 107

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 41/88 (46%), Positives = 58/88 (65%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR+ L ++I  + GLSR DS   + T+   +  +   GE++KIS F TF V+QKG R+
Sbjct: 3  TVTRAHLAETIYTQVGLSRNDSALLLETVLERMSSALEAGESVKISGFGTFSVRQKGRRI 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
          GRN +T  EV I PRRV+VF+ S +LK 
Sbjct: 63 GRNPKTGIEVPIMPRRVLVFRPSQVLKA 90


>gi|121609650|ref|YP_997457.1| histone family protein DNA-binding protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121554290|gb|ABM58439.1| histone family protein DNA-binding protein [Verminephrobacter
           eiseniae EF01-2]
          Length = 105

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 45/90 (50%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L++ IS    +S+  + R + +    +  +  +G  + +  F TF V ++ +R G
Sbjct: 16  VNKTELIEYISDNADISKAAAARALESTIEAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 75

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN +T   +KI   +V  F+    LK  + 
Sbjct: 76  RNPRTGSAIKIKAAKVPKFRPGKALKDALN 105


>gi|331001373|ref|ZP_08324997.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT
          11859]
 gi|329568632|gb|EGG50434.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT
          11859]
          Length = 91

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+++++ +  +S+  + R V  + + I ++   G+ +++  F TF V ++ +R G
Sbjct: 2  MNKADLIEAVAIKCDISKLAAQRAVDAMIDTITNALQNGKEVQLLGFGTFSVVERAARKG 61

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RNL+TN+ + I  R+V  F A   LK  + 
Sbjct: 62 RNLRTNKSIDIPARKVPKFVAGKNLKDVVE 91


>gi|218777883|ref|YP_002429201.1| histone family protein DNA-binding protein [Desulfatibacillum
          alkenivorans AK-01]
 gi|218759267|gb|ACL01733.1| histone family protein DNA-binding protein [Desulfatibacillum
          alkenivorans AK-01]
          Length = 91

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV ++    G+S+ D+ + V   F+ + D+   GE ++I    +F VK+  S  G
Sbjct: 1  MNKLELVSTLKNRAGISKTDAAKIVQIFFDSMADALAEGERVEIRGLCSFFVKEYKSYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + VKI P+++  FK    LK+R+
Sbjct: 61 RNPKTGEPVKISPKKLPFFKCGKELKERV 89


>gi|282855424|ref|ZP_06264745.1| DNA-binding protein HU [Pyramidobacter piscolens W5455]
 gi|282586720|gb|EFB91967.1| DNA-binding protein HU [Pyramidobacter piscolens W5455]
          Length = 91

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 56/91 (61%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DL+  ++   G+S+K +   ++  F  I  +  +G+ +++  F TF V+++ +RVG
Sbjct: 1  MTKNDLINEVAANAGMSKKAAGEAISATFAAIEKALAKGDRVQLVGFGTFEVRKRAARVG 60

Query: 65 RNLQ-TNQEVKIDPRRVVVFKASSILKKRIM 94
          RN Q   + ++I  ++V VF+A   LK+++ 
Sbjct: 61 RNPQDPKKTIQIPAKKVPVFRAGKGLKEQVN 91


>gi|297538803|ref|YP_003674572.1| integration host factor subunit beta [Methylotenera sp. 301]
 gi|297258150|gb|ADI29995.1| integration host factor, beta subunit [Methylotenera sp. 301]
          Length = 93

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  +++ F  L  KD+   V  + + + D+   GE I+I  F +F +  +  R+
Sbjct: 1  MTKSELITLLAERFPQLVVKDAELSVKAILDAMSDNLATGERIEIRGFGSFSLNYRPPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  +V++  + V  FKA   L++R+
Sbjct: 61 GRNPKTGSKVQVPEKHVPHFKAGKELRERV 90


>gi|158334333|ref|YP_001515505.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
 gi|158304574|gb|ABW26191.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
          Length = 91

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +I+ + G+++K +   ++   + I D+   G+ + +  F +F  + + +R G
Sbjct: 1  MNKGELVDAIADKTGVTKKQADVTLSAAVDVIIDAVSHGDKVTLVGFGSFEPRDRKARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +++KI   RV  F A  + K ++ 
Sbjct: 61 RNPQTGKKLKIPATRVPAFSAGKLFKDKVA 90


>gi|148241580|ref|YP_001226737.1| DNA-binding protein HU [Synechococcus sp. RCC307]
 gi|147849890|emb|CAK27384.1| DNA-binding protein HU [Synechococcus sp. RCC307]
          Length = 91

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ D ++ V      I DS V G+ + I  F +F  +++ +R G
Sbjct: 1  MNKADLVNLVAARTELTKTDVSQVVDAAIETIIDSVVEGKKVSILGFGSFESRERSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T +++ I  ++V  F A  + K R+  
Sbjct: 61 LNPKTGEKIAIPAKKVPAFTAGKMFKDRVQG 91


>gi|78222818|ref|YP_384565.1| histone-like DNA-binding protein [Geobacter metallireducens GS-15]
 gi|78194073|gb|ABB31840.1| Histone-like DNA-binding protein [Geobacter metallireducens GS-15]
          Length = 96

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 51/96 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+++LV +++K   L++  + + V  +   +  +  +G+ + +  F +F V  + +R G
Sbjct: 1   MTKAELVDAVAKSAELTKAAADKAVNGVIEAVTAALKKGDKVTLVGFGSFEVATRKARTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RN QT +E+KI   +V  F+    LK  +    + +
Sbjct: 61  RNPQTGKEIKIAAAKVPKFRPGKALKDAVAGAKKKK 96


>gi|163867319|ref|YP_001608513.1| integration host factor subunit beta [Bartonella tribocorum CIP
          105476]
 gi|254803527|sp|A9IL25|IHFB_BART1 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|161016960|emb|CAK00518.1| integration host factor beta chain [Bartonella tribocorum CIP
          105476]
          Length = 92

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  +F EI  +   G+ +++  F  F VK + +R 
Sbjct: 1  MVKSELVQIIARHNPHLFQRDVENIVNAIFEEISTALANGDRVELRGFGAFSVKSRSARN 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V +D + +  FK    L+ R+  
Sbjct: 61 GRNPRTGEAVAVDEKWIPFFKTGKDLRDRLNQ 92


>gi|187477853|ref|YP_785877.1| integration host factor subunit beta [Bordetella avium 197N]
 gi|115422439|emb|CAJ48964.1| integration host factor beta-subunit [Bordetella avium 197N]
          Length = 119

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 61/108 (56%), Gaps = 3/108 (2%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+ ++S  +  L+ +D+   V T+ + +  +   G+ I+I  F +F + Q+  RV
Sbjct: 1   VTKSELIAALSARYPQLAARDTDLAVKTVLDAMTQALASGQRIEIRGFGSFSLSQRSPRV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111
           GRN ++ ++V +  ++V  FKA   L++R+  D+ G +   D     S
Sbjct: 61  GRNPKSGEQVLVPGKQVPHFKAGKELRERV--DLAGNEAGGDSSNESS 106


>gi|303257389|ref|ZP_07343402.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
 gi|302859746|gb|EFL82824.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
          Length = 90

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+++++ +  +S+  + R V  + + I ++   G+ +++  F TF V ++ +R G
Sbjct: 1  MNKADLIEAVAIKCDISKLAAQRAVDAMIDTITNALQNGKEVQLLGFGTFSVVERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RNL+TN+ + I  R+V  F A   LK  + 
Sbjct: 61 RNLRTNKSIDIPARKVPKFVAGKNLKDVVE 90


>gi|160872885|ref|ZP_02063017.1| DNA-binding protein HU-beta [Rickettsiella grylli]
 gi|159121684|gb|EDP47022.1| DNA-binding protein HU-beta [Rickettsiella grylli]
          Length = 92

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 44/92 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+  I +   + +  + + +  + + I  +   GE + +  F    V+ + +R G
Sbjct: 1  MNKSDLIDVIGEAAQIPKNVAGKTLEKILDSITKALCEGEDVSLVGFGALCVRHRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T + + I    VV FKA  +LK  +   
Sbjct: 61 RNPKTGESIPIKASNVVAFKAGKVLKDAVQKG 92


>gi|16273225|ref|NP_439464.1| integration host factor subunit alpha [Haemophilus influenzae Rd
          KW20]
 gi|68249973|ref|YP_249085.1| integration host factor subunit alpha [Haemophilus influenzae
          86-028NP]
 gi|145630800|ref|ZP_01786578.1| predicted transporter [Haemophilus influenzae R3021]
 gi|145641673|ref|ZP_01797250.1| hypothetical protein CGSHiR3021_01942 [Haemophilus influenzae
          R3021]
 gi|260581340|ref|ZP_05849156.1| integration host factor, alpha subunit [Haemophilus influenzae
          RdAW]
 gi|260582472|ref|ZP_05850263.1| integration host factor, alpha subunit [Haemophilus influenzae
          NT127]
 gi|319897114|ref|YP_004135309.1| integration host factor (ihf), DNA-binding protein, alpha subunit
          [Haemophilus influenzae F3031]
 gi|1170524|sp|P43723|IHFA_HAEIN RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|81335603|sp|Q4QKM2|IHFA_HAEI8 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|1574771|gb|AAC22959.1| integration host factor, alpha-subunit (himA) [Haemophilus
          influenzae Rd KW20]
 gi|68058172|gb|AAX88425.1| integration host factor alpha-subunit [Haemophilus influenzae
          86-028NP]
 gi|144983682|gb|EDJ91142.1| predicted transporter [Haemophilus influenzae R3021]
 gi|145273720|gb|EDK13589.1| hypothetical protein CGSHiR3021_01942 [Haemophilus influenzae
          22.4-21]
 gi|260092007|gb|EEW75954.1| integration host factor, alpha subunit [Haemophilus influenzae
          RdAW]
 gi|260094452|gb|EEW78349.1| integration host factor, alpha subunit [Haemophilus influenzae
          NT127]
 gi|309973174|gb|ADO96375.1| Integration host factor, alpha subunit [Haemophilus influenzae
          R2846]
 gi|317432618|emb|CBY80979.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Haemophilus influenzae F3031]
          Length = 96

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 52/92 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+ D+++ +S ++ LS++D+   V     EI  S   G+ +K+S F  F ++ K SR 
Sbjct: 3  TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRLSLESGQDVKLSGFGNFELRDKSSRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T   V +  RRVV FK    L+ R+  
Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARVEK 94


>gi|225851130|ref|YP_002731364.1| histone family protein DNA-binding protein [Persephonella marina
          EX-H1]
 gi|225645754|gb|ACO03940.1| histone family protein DNA-binding protein [Persephonella marina
          EX-H1]
          Length = 90

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  ++ E G+++  + R V      + ++  +GE + +     F+VK++ +R G
Sbjct: 1  MTKAELVAKVAAEAGVTKASAERCVNAFVKALTEALEKGERVALPGLGVFNVKERKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E+ I  R+VV F A+  LK+++ 
Sbjct: 61 RNPRTGEEITIPARKVVTFHAAKALKEKVK 90


>gi|167566113|ref|ZP_02359029.1| histone family protein DNA-binding protein [Burkholderia
          oklahomensis EO147]
          Length = 92

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 48/92 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++   G+S+ D+++ V  + + I D+  R EA+++  F  F   Q+ +R G
Sbjct: 1  MNKQELIDAVAAGAGVSKSDASKTVQAVLDAITDAVSRDEAVQLVGFGAFSRGQRSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN  T +E+ I     V F A    K  + + 
Sbjct: 61 RNPTTGEEIAIAAANTVKFTAGKAFKDAVNES 92


>gi|49473700|ref|YP_031742.1| integration host factor subunit beta [Bartonella quintana str.
          Toulouse]
 gi|49239203|emb|CAF25520.1| Integration host factor beta-subunit [Bartonella quintana str.
          Toulouse]
          Length = 92

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  +F EI  +   G  +++  F  F VK + +R 
Sbjct: 1  MVKSELVQIIARHNPHLFQRDVENIVNAIFEEISTALANGNRVELRGFGAFSVKSRSARN 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V ++ + +  FK    L+ R+  
Sbjct: 61 GRNPRTGETVMVEEKWIPFFKTGKDLRDRLNQ 92


>gi|310766847|gb|ADP11797.1| HopD, DNA-binding protein HU-beta (Synonym HupB) [Erwinia sp.
          Ejp617]
          Length = 90

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L++ I+ +  +S+    R +    + +  S   GE + + +F TF V+++  R G
Sbjct: 1  MNKSQLIEKIAADADVSKAAVGRILEAFIDTVTKSLQAGEEVALLNFGTFSVRERAERPG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I  R+V  F+A   L++ + 
Sbjct: 61 RNPQTGKEITIAARKVAGFRAGKELREAVK 90


>gi|332283861|ref|YP_004415772.1| DNA-binding protein Hu-beta [Pusillimonas sp. T7-7]
 gi|330427814|gb|AEC19148.1| DNA-binding protein Hu-beta [Pusillimonas sp. T7-7]
          Length = 90

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ IS +  LS+ D+ R +      +  +  +   + +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHISTKADLSKADAGRALEAFIGAVKTTLKKKGTVTLVGFGTFAVSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + +KI   +V  F+    LK  + 
Sbjct: 61 RNPRTGEAIKIKKAKVPKFRPGKALKDAVN 90


>gi|70733385|ref|YP_263160.1| integration host factor subunit beta [Pseudomonas fluorescens
          Pf-5]
 gi|68347684|gb|AAY95290.1| integration host factor, beta subunit, putative [Pseudomonas
          fluorescens Pf-5]
          Length = 91

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L  +I+++  L+++ + R +  +  EI  +  R +++ +  F TF  + +G+R G
Sbjct: 1  MRKPELAAAIAEKADLTKEQANRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT + VKI     V FK    LK  + 
Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKSLKDSVN 90


>gi|113461118|ref|YP_719186.1| integration host factor subunit beta [Haemophilus somnus 129PT]
 gi|170717700|ref|YP_001784773.1| integration host factor subunit beta [Haemophilus somnus 2336]
 gi|123031307|sp|Q0I390|IHFB_HAES1 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|189045038|sp|B0UUH4|IHFB_HAES2 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|112823161|gb|ABI25250.1| integration host factor, beta-subunit [Haemophilus somnus 129PT]
 gi|168825829|gb|ACA31200.1| integration host factor, beta subunit [Haemophilus somnus 2336]
          Length = 94

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+++++     +  KD    V  +  ++  +   GE I+I  F +F +  + SR+
Sbjct: 1  MTKSELIENLASTNPNVPLKDIENAVKDILEQLSQALENGERIEIRGFGSFSLHFRQSRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T ++V +  + V  FKA   LK+R+ 
Sbjct: 61 GRNPKTGEKVDLSAKYVPHFKAGKELKERVN 91


>gi|77461821|ref|YP_351328.1| nucleoid protein HU alpha subunit [Pseudomonas fluorescens Pf0-1]
 gi|77385824|gb|ABA77337.1| DNA-binding protein HU1 [Pseudomonas fluorescens Pf0-1]
          Length = 91

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L  +I+++  L+++ + R +  +  EI  +  R +++ +  F TF  + +G+R G
Sbjct: 1  MRKPELAAAIAEKADLTKEQANRVLNAVLEEITGALHRKDSVTLVGFGTFLQRHRGARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT + VKI     V FK    LK  + 
Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKSLKDSVN 90


>gi|94497991|ref|ZP_01304555.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58]
 gi|94422574|gb|EAT07611.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58]
          Length = 96

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 1/96 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ +++E  GL+  +  R V   F EI D    G  +++  F  F  + + +R 
Sbjct: 1  MIRSELIQKLAEENPGLTVPEVERIVDLFFREIVDRLASGGRVELRGFGAFTTRARDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN +T ++V +  +RV  FK    +++R+      
Sbjct: 61 GRNPRTGEQVPVCAKRVPYFKPGKEMRERLNSGSEA 96


>gi|148266417|ref|YP_001233123.1| histone family protein DNA-binding protein [Geobacter
          uraniireducens Rf4]
 gi|222056893|ref|YP_002539255.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32]
 gi|146399917|gb|ABQ28550.1| histone family protein DNA-binding protein [Geobacter
          uraniireducens Rf4]
 gi|221566182|gb|ACM22154.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32]
          Length = 94

 Score =  123 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV++++K   L++  + + V    + +  +  +G+ + +  F +F V  + +R G
Sbjct: 1  MTKAELVEAVAKSASLTKGAAEKAVGAFISTVSGALKKGDRVTLVGFGSFEVASRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN QT +E+KI   +V  F+    LK  +    +
Sbjct: 61 RNPQTGKEIKIAAAKVPKFRPGKALKDAVASKKK 94


>gi|49073542|gb|AAT49327.1| PA5348 [synthetic construct]
          Length = 91

 Score =  123 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 49/91 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L  +I+++  L+++ + R +  L +EI  +  R +++ +  F TF  + +G+R G
Sbjct: 1  MRKPELAAAIAEKADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +N QT Q VKI     V FK    L+  +  
Sbjct: 61 KNPQTGQPVKIKASNTVAFKPGKALRDAVNG 91


>gi|190574009|ref|YP_001971854.1| integration host factor subunit beta [Stenotrophomonas
          maltophilia K279a]
 gi|194365425|ref|YP_002028035.1| integration host factor subunit beta [Stenotrophomonas
          maltophilia R551-3]
 gi|254523418|ref|ZP_05135473.1| integration host factor, beta subunit [Stenotrophomonas sp.
          SKA14]
 gi|226709815|sp|B4SSV3|IHFB_STRM5 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709816|sp|B2FNP6|IHFB_STRMK RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|190011931|emb|CAQ45552.1| putative integration host factor beta-subunit [Stenotrophomonas
          maltophilia K279a]
 gi|194348229|gb|ACF51352.1| integration host factor, beta subunit [Stenotrophomonas
          maltophilia R551-3]
 gi|219721009|gb|EED39534.1| integration host factor, beta subunit [Stenotrophomonas sp.
          SKA14]
          Length = 101

 Score =  123 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ +++    L   D    V +L   +  S   G+ I+I  F +F +  +  R+
Sbjct: 1  MTKSELIEILARRQAHLKADDVDLAVKSLLEMMGGSLSAGDRIEIRGFGSFSLHYRPPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  + V  FK    L++R+
Sbjct: 61 GRNPKTGESVALPGKHVPHFKPGKELRERV 90


>gi|167627762|ref|YP_001678262.1| DNA-binding protein HU-beta [Francisella philomiragia subsp.
          philomiragia ATCC 25017]
 gi|241668326|ref|ZP_04755904.1| DNA-binding protein HU-beta [Francisella philomiragia subsp.
          philomiragia ATCC 25015]
 gi|254876859|ref|ZP_05249569.1| DNA-binding protein HU-beta [Francisella philomiragia subsp.
          philomiragia ATCC 25015]
 gi|167597763|gb|ABZ87761.1| DNA-binding protein HU-beta [Francisella philomiragia subsp.
          philomiragia ATCC 25017]
 gi|254842880|gb|EET21294.1| DNA-binding protein HU-beta [Francisella philomiragia subsp.
          philomiragia ATCC 25015]
          Length = 90

 Score =  123 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV +I+KE  ++++ ++  +      +  +   G+++ +  F TF VK++ +R G
Sbjct: 1  MNKSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + +KI   +V  FKA   LK  + 
Sbjct: 61 RNPKTGETIKIAASKVPSFKAGKGLKDAVK 90


>gi|289522945|ref|ZP_06439799.1| DNA-binding protein HU [Anaerobaculum hydrogeniformans ATCC
          BAA-1850]
 gi|289503488|gb|EFD24652.1| DNA-binding protein HU [Anaerobaculum hydrogeniformans ATCC
          BAA-1850]
          Length = 92

 Score =  123 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+SD+V  ++K  G+S+KD+   V      + D+  +GE ++I  F TF V+ + +R G
Sbjct: 1  MTKSDIVSEVAKATGMSKKDAAVAVDAFIKSVVDALSKGEEVQIMGFGTFEVRNRAARKG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95
          RN Q  +E ++I  + V  F+A  +LK  +  
Sbjct: 61 RNPQNPEEIIEIPEKTVPAFRAGKMLKDAVAK 92


>gi|332666093|ref|YP_004448881.1| histone family protein DNA-binding protein [Haliscomenobacter
          hydrossis DSM 1100]
 gi|332334907|gb|AEE52008.1| histone family protein DNA-binding protein [Haliscomenobacter
          hydrossis DSM 1100]
          Length = 90

 Score =  123 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+  I++   +++  +T  +  + + I         + +  F TF V ++ +R G
Sbjct: 1  MNKGDLINKIAEGAKITKAQATDALNAVLDSIAAELKGDGKVTLIGFGTFSVSKRDARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT Q + ID ++VV FK    L   + 
Sbjct: 61 RNPQTGQTITIDAKKVVKFKPGKELSDSVN 90


>gi|323495048|ref|ZP_08100137.1| integration host factor subunit beta [Vibrio brasiliensis LMG
          20546]
 gi|323310705|gb|EGA63880.1| integration host factor subunit beta [Vibrio brasiliensis LMG
          20546]
          Length = 93

 Score =  123 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + +++  LS K+    V  +   +  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLESGDRIEIRGFGSFSLHFREPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L++R+ 
Sbjct: 61 GRNPKTGDKVELEGKFVPHFKPGKELRERVN 91


>gi|319794585|ref|YP_004156225.1| histone family protein DNA-binding protein [Variovorax paradoxus
           EPS]
 gi|315597048|gb|ADU38114.1| histone family protein DNA-binding protein [Variovorax paradoxus
           EPS]
          Length = 123

 Score =  123 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 53/97 (54%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +  +T++ L   + ++ GL++++S   V   F  +  S + G  +KIS F  F ++ K  
Sbjct: 13  TPALTKAHLADLLFEQIGLNKRESKDMVEAFFELVASSLIEGTDVKISGFGNFQIRVKAP 72

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           R GRN +T + + I  RRV  F AS+ LK++I   + 
Sbjct: 73  RPGRNPRTGEAIPIGERRVATFHASAKLKEQIHGSIE 109


>gi|182679839|ref|YP_001833985.1| integration host factor, beta subunit [Beijerinckia indica subsp.
          indica ATCC 9039]
 gi|226709769|sp|B2IKV6|IHFB_BEII9 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|182635722|gb|ACB96496.1| integration host factor, beta subunit [Beijerinckia indica subsp.
          indica ATCC 9039]
          Length = 97

 Score =  123 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I+     L  +D  + V  + +EI  +  RG+ +++  F  F VK++ +R+
Sbjct: 1  MIKSELVQRIADRNPHLYLRDVEKIVNAILDEITRALSRGDRVELRGFGAFSVKRRDARL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T   V ++ + V  FK    +++R+ +  
Sbjct: 61 GRNPRTGAHVPVEEKSVPFFKTGKEMRERLNEGY 94


>gi|33594401|ref|NP_882045.1| DNA-binding protein HU-beta [Bordetella pertussis Tohama I]
 gi|33597120|ref|NP_884763.1| DNA-binding protein HU-beta [Bordetella parapertussis 12822]
 gi|33600964|ref|NP_888524.1| DNA-binding protein HU-beta [Bordetella bronchiseptica RB50]
 gi|163857015|ref|YP_001631313.1| DNA-binding protein HU-beta [Bordetella petrii DSM 12804]
 gi|293604392|ref|ZP_06686799.1| HU family DNA-binding protein [Achromobacter piechaudii ATCC
          43553]
 gi|311105151|ref|YP_003978004.1| DNA-binding protein HU-beta [Achromobacter xylosoxidans A8]
 gi|5777374|emb|CAB53382.1| DNA-binding protein Hu-beta [Bordetella pertussis]
 gi|5777382|emb|CAB53380.1| Hu-beta [Bordetella bronchiseptica]
 gi|33564476|emb|CAE43789.1| DNA-binding protein Hu-beta [Bordetella pertussis Tohama I]
 gi|33566571|emb|CAE37828.1| DNA-binding protein Hu-beta [Bordetella parapertussis]
 gi|33575399|emb|CAE32476.1| DNA-binding protein Hu-beta [Bordetella bronchiseptica RB50]
 gi|163260743|emb|CAP43045.1| DNA-binding protein Hu-beta [Bordetella petrii]
 gi|292817269|gb|EFF76343.1| HU family DNA-binding protein [Achromobacter piechaudii ATCC
          43553]
 gi|310759840|gb|ADP15289.1| DNA-binding protein HU-beta [Achromobacter xylosoxidans A8]
 gi|317402747|gb|EFV83294.1| DNA-binding protein Hu-beta [Achromobacter xylosoxidans C54]
 gi|332383812|gb|AEE68659.1| DNA-binding protein HU-beta [Bordetella pertussis CS]
          Length = 90

 Score =  123 bits (309), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+ +  +S+  + R +  L   +  +  +G  + +  F TF V  + +R G
Sbjct: 1  MNKTELIDHIASKADISKAAAGRSLDALIGAVKTTLKKGGTVTLVGFGTFAVSARAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + +KI   +V  F+    LK  + 
Sbjct: 61 RNPRTGETIKIKKAKVPKFRPGKALKDAVN 90


>gi|320354725|ref|YP_004196064.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
 gi|320123227|gb|ADW18773.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
          Length = 92

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 50/92 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL++SI+    +S+  + R +  L + +  +   G+ + +  F +F V  +  R G
Sbjct: 1  MNKSDLIESIAHSAQISKIAAERGLNGLLSTLSAAITEGKRVTLVGFGSFSVVDRAPRKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T + V I PRRVV F+    L  +I+ D
Sbjct: 61 RNPKTGETVPIPPRRVVKFRPGKELAGKILCD 92


>gi|254449408|ref|ZP_05062845.1| integration host factor, beta subunit [Octadecabacter antarcticus
           238]
 gi|198263814|gb|EDY88084.1| integration host factor, beta subunit [Octadecabacter antarcticus
           238]
          Length = 117

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + RS+L  +I+++   L ++D  R V T+F  I ++   G+ +++  F  F VK++ +R+
Sbjct: 25  MIRSELTDTIAEQNPHLYQRDVERIVNTIFGRIIEAMSNGDRVELRGFGAFSVKKRDARL 84

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           GRN +T + V+++ + V  FK   +L+ R+  
Sbjct: 85  GRNPRTGEAVQVEEKHVPFFKTGKLLRDRLNG 116


>gi|220904362|ref|YP_002479674.1| histone family protein DNA-binding protein [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868661|gb|ACL48996.1| histone family protein DNA-binding protein [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 90

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV+ I+ +  L++  + R +      + D+ V+   + ++ F TF V+ + +R G
Sbjct: 1  MTKADLVEKIAAKANLTKAAAERTLNAFLASVEDALVKESKLTLTGFGTFAVEHRKARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   + I   +++ F+   ILK  + 
Sbjct: 61 RNPRTGDTLTIPACKIIKFRPGKILKDSLN 90


>gi|288958412|ref|YP_003448753.1| DNA-binding protein HU-beta [Azospirillum sp. B510]
 gi|288910720|dbj|BAI72209.1| DNA-binding protein HU-beta [Azospirillum sp. B510]
          Length = 91

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+++++   G+ + D+ + V  +F  I  +  RGE ++++ F  F V ++ +R G
Sbjct: 1  MNQAELIETVATNAGIKKADAAKVVQAVFEGISGALGRGEDVRLAGFGIFEVAERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + V I   +   FK +  L+  +  
Sbjct: 61 RNPRTGEVVAIAASKAPKFKPAKQLRDLVNG 91


>gi|159026304|emb|CAO88881.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 94

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 48/94 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  I+ +  +++K +   +T     I D+   G+ + +  F +F  +++ +R G
Sbjct: 1  MNKGELIDQIALKASVTKKQADAVLTAAIETIIDAVSEGDKVTLVGFGSFEARERQAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T  +++I   RV  F A  + K R+  D  
Sbjct: 61 RNPKTGDKMEIPATRVPAFSAGKLFKDRVAPDKE 94


>gi|145636219|ref|ZP_01791889.1| predicted transporter [Haemophilus influenzae PittHH]
 gi|145270741|gb|EDK10674.1| predicted transporter [Haemophilus influenzae PittHH]
          Length = 96

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 50/92 (54%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+ D+++ +S ++ LS+ D+   V     EI  S   G  +K+S F  F ++ K SR 
Sbjct: 3  TITKIDIIEYLSDKYQLSKYDTKNVVENFLEEIRSSLESGHDVKLSGFGNFELRDKSSRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T   V +  RRVV FK    L+ R+  
Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARVEK 94


>gi|91214902|ref|ZP_01251875.1| DNA-binding protein HU-beta (NS1) (HU-1) [Psychroflexus torquis
          ATCC 700755]
 gi|91187329|gb|EAS73699.1| DNA-binding protein HU-beta (NS1) (HU-1) [Psychroflexus torquis
          ATCC 700755]
          Length = 90

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 55/90 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++ G+++ ++ + + +    +  +  +G+ + +  F ++ V ++ +R G
Sbjct: 1  MNKTNLIDAMAEDAGVTKAEAKKALESFLENVEGALKKGDRVSLVGFGSWSVSKRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI  + VV FKA S L+K + 
Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGSDLQKAVN 90


>gi|121594958|ref|YP_986854.1| histone family protein DNA-binding protein [Acidovorax sp. JS42]
 gi|222110394|ref|YP_002552658.1| histone family protein DNA-binding protein [Acidovorax ebreus
          TPSY]
 gi|120607038|gb|ABM42778.1| histone family protein DNA-binding protein [Acidovorax sp. JS42]
 gi|221729838|gb|ACM32658.1| histone family protein DNA-binding protein [Acidovorax ebreus
          TPSY]
          Length = 90

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+    +S+  + R + +    +  +  +G  + +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIANNADISKAAAARALESTIEAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   +V  F+    LK  + 
Sbjct: 61 RNPRTGATIKIKAAKVPKFRPGKALKDALN 90


>gi|15600541|ref|NP_254035.1| DNA-binding protein [Pseudomonas aeruginosa PAO1]
 gi|107104450|ref|ZP_01368368.1| hypothetical protein PaerPA_01005527 [Pseudomonas aeruginosa
          PACS2]
 gi|116053495|ref|YP_793822.1| HU family DNA-binding protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894451|ref|YP_002443321.1| putative DNA-binding protein [Pseudomonas aeruginosa LESB58]
 gi|254237960|ref|ZP_04931283.1| hypothetical protein PACG_04070 [Pseudomonas aeruginosa C3719]
 gi|254243767|ref|ZP_04937089.1| hypothetical protein PA2G_04593 [Pseudomonas aeruginosa 2192]
 gi|296392208|ref|ZP_06881683.1| putative DNA-binding protein [Pseudomonas aeruginosa PAb1]
 gi|313106776|ref|ZP_07792992.1| putative DNA-binding protein [Pseudomonas aeruginosa 39016]
 gi|14194645|sp|Q9HTL0|DBHA_PSEAE RecName: Full=DNA-binding protein HU-alpha
 gi|9951668|gb|AAG08733.1|AE004947_3 probable DNA-binding protein [Pseudomonas aeruginosa PAO1]
 gi|115588716|gb|ABJ14731.1| putative DNA-binding protein HU family [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|126169891|gb|EAZ55402.1| hypothetical protein PACG_04070 [Pseudomonas aeruginosa C3719]
 gi|126197145|gb|EAZ61208.1| hypothetical protein PA2G_04593 [Pseudomonas aeruginosa 2192]
 gi|218774680|emb|CAW30497.1| probable DNA-binding protein [Pseudomonas aeruginosa LESB58]
 gi|310879494|gb|EFQ38088.1| putative DNA-binding protein [Pseudomonas aeruginosa 39016]
          Length = 90

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L  +I+++  L+++ + R +  L +EI  +  R +++ +  F TF  + +G+R G
Sbjct: 1  MRKPELAAAIAEKADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT Q VKI     V FK    L+  + 
Sbjct: 61 KNPQTGQPVKIKASNTVAFKPGKALRDAVN 90


>gi|296534243|ref|ZP_06896727.1| integration host factor [Roseomonas cervicalis ATCC 49957]
 gi|296265430|gb|EFH11571.1| integration host factor [Roseomonas cervicalis ATCC 49957]
          Length = 102

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/97 (43%), Positives = 59/97 (60%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           TITR+ L ++I  + GLSR +S   +  +   I  +   G  +KIS+F TF V+QKG R
Sbjct: 2  NTITRAQLAEAIYAQVGLSRNESAALLEDVLERISAALEAGRPVKISAFGTFSVRQKGMR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          VGRN +T  EV I PRRV+ F+ S +LK R+  +  G
Sbjct: 62 VGRNPKTGIEVPIMPRRVLSFRPSQVLKARLNGEPVG 98


>gi|158339247|ref|YP_001520424.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
 gi|158309488|gb|ABW31105.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
          Length = 91

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV SI ++ G ++K +   ++ L   I DS   GE + +  F +F  + + +R G
Sbjct: 1  MNKADLVDSIVEKSGTTKKQADTILSALTETIIDSVSSGEKVTLVGFGSFEARDRKARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +++KI   +  VF A    K+++ D
Sbjct: 61 RNPQTGKQLKIPATKAPVFSAGKDFKEKVRD 91


>gi|56751859|ref|YP_172560.1| DNA-binding protein HU [Synechococcus elongatus PCC 6301]
 gi|81301057|ref|YP_401265.1| nucleoid protein Hbs [Synechococcus elongatus PCC 7942]
 gi|56686818|dbj|BAD80040.1| DNA binding protein HU [Synechococcus elongatus PCC 6301]
 gi|81169938|gb|ABB58278.1| bacterial nucleoid protein Hbs [Synechococcus elongatus PCC 7942]
          Length = 91

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 44/91 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  ++   GL++      +  L + I D+ V GE + I  F  F  +++  R G
Sbjct: 1  MNKGELIDQVAVRTGLTKVQVAAAIDALVDVIVDTVVEGEKVSILGFGAFEARERSERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T  ++ I  ++V  F A  + K R+  
Sbjct: 61 LNPKTGDKILIPAKKVPAFTAGKLFKDRVQG 91


>gi|226944153|ref|YP_002799226.1| integration host factor subunit alpha [Azotobacter vinelandii DJ]
 gi|226719080|gb|ACO78251.1| integration host factor, alpha subunit [Azotobacter vinelandii
          DJ]
          Length = 92

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 47/85 (55%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          + + + +E GL+++++   V   F EI  +    E +K+S F  F ++ K  R GRN +T
Sbjct: 1  MAERLYEELGLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQRPGRNPKT 60

Query: 70 NQEVKIDPRRVVVFKASSILKKRIM 94
           +E+ I  RRVV F+    LK R+ 
Sbjct: 61 GEEIPITARRVVTFRPGQKLKARVE 85


>gi|5420132|emb|CAB46606.1| HimA protein [Yersinia pseudotuberculosis]
          Length = 98

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 50/95 (52%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS +     V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEHLFEKLGLSNEMLKILVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T +++ I  RRVV F+    LK R+     
Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVESATP 96


>gi|330505647|ref|YP_004382516.1| nucleoid protein HU subunit alpha [Pseudomonas mendocina NK-01]
 gi|328919933|gb|AEB60764.1| nucleoid protein HU alpha subunit [Pseudomonas mendocina NK-01]
          Length = 90

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L  +I+++  L++  + R +  +  EI  +  R +++ +  F TF  + +G+R G
Sbjct: 1  MRKPELAAAIAEKTDLTKDQANRVLNAVLEEITGALNRKDSVTLVGFGTFVQRHRGARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT Q VKI     V FK    LK  + 
Sbjct: 61 KNPQTGQPVKIKASNTVAFKPGKSLKDAVN 90


>gi|39996845|ref|NP_952796.1| integration host factor subunit beta [Geobacter sulfurreducens
          PCA]
 gi|39983733|gb|AAR35123.1| integration host factor, beta subunit [Geobacter sulfurreducens
          PCA]
 gi|298505860|gb|ADI84583.1| integration host factor, beta subunit [Geobacter sulfurreducens
          KN400]
          Length = 92

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++++ E GL+ K +   V  +F+ +  + +R E I+I  F +F VK   S  G
Sbjct: 1  MNKSELIEALAAEKGLTYKKAEEVVNIVFDSMSSAMIRNERIEIRGFGSFVVKDYKSYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + +++ P+++  FK    LK+R+
Sbjct: 61 RNPKTGEPIEVKPKKLPFFKVGKELKERV 89


>gi|114798899|ref|YP_758925.1| integration host factor subunit beta [Hyphomonas neptunium ATCC
          15444]
 gi|114739073|gb|ABI77198.1| integration host factor, beta subunit [Hyphomonas neptunium ATCC
          15444]
          Length = 99

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S L++ ++ +   L  +D  + V  +  EI D+  RG+ +++  F  F V+++ +R 
Sbjct: 1  MLKSQLIEKLAAENAHLRHEDVEKVVNVILGEIGDALTRGDRVELRGFGAFSVRKRDARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + VK+  + V  FKA   L+ R+   
Sbjct: 61 GRNPRTGEPVKVPAKAVPFFKAGKELRARVNGG 93


>gi|225851686|ref|YP_002731919.1| integration host factor subunit beta [Brucella melitensis ATCC
          23457]
 gi|256045945|ref|ZP_05448817.1| integration host factor subunit beta [Brucella melitensis bv. 1
          str. Rev.1]
 gi|256264801|ref|ZP_05467333.1| integration host factor subunit beta [Brucella melitensis bv. 2
          str. 63/9]
 gi|260563226|ref|ZP_05833712.1| integration host factor subunit beta [Brucella melitensis bv. 1
          str. 16M]
 gi|265992355|ref|ZP_06104912.1| integration host factor subunit beta [Brucella melitensis bv. 1
          str. Rev.1]
 gi|21362604|sp|Q8YET3|IHFB_BRUME RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|254803528|sp|C0RGK7|IHFB_BRUMB RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|225640051|gb|ACN99964.1| integration host factor, beta subunit [Brucella melitensis ATCC
          23457]
 gi|260153242|gb|EEW88334.1| integration host factor subunit beta [Brucella melitensis bv. 1
          str. 16M]
 gi|263003421|gb|EEZ15714.1| integration host factor subunit beta [Brucella melitensis bv. 1
          str. Rev.1]
 gi|263095212|gb|EEZ18881.1| integration host factor subunit beta [Brucella melitensis bv. 2
          str. 63/9]
          Length = 94

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I+ +   L ++D    V  +F+EI ++   G  +++  F  F VK + +R 
Sbjct: 1  MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T + V ++ + V  FK    L+ R+   +
Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRLNGAV 94


>gi|229496747|ref|ZP_04390458.1| DNA-binding protein, HU family [Porphyromonas endodontalis ATCC
          35406]
 gi|229316293|gb|EEN82215.1| DNA-binding protein, HU family [Porphyromonas endodontalis ATCC
          35406]
          Length = 88

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 51/85 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ + +++++ GL++ D+ R V      + ++  +G+ + +  F TF V Q+ +R G
Sbjct: 1  MNKTEFIAAVAEKAGLTKADAQRAVNAFTEVVKETMEKGDRLPLVGFGTFSVSQRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          +N +T + +KI  R+VV FK  + L
Sbjct: 61 KNPRTGETIKIAARKVVHFKPGANL 85


>gi|37525568|ref|NP_928912.1| integration host factor subunit beta [Photorhabdus luminescens
          subsp. laumondii TTO1]
 gi|81707739|sp|Q7N6D2|IHFB_PHOLL RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|36784996|emb|CAE13916.1| integration host factor beta-subunit (IHF-beta) [Photorhabdus
          luminescens subsp. laumondii TTO1]
          Length = 94

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +S K     V  + + +  +   GE I++  F +F +  +  RV
Sbjct: 1  MTKSELIERLAGQQSHISAKTVEDAVKEILDHMAITLADGERIEVRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R+ 
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91


>gi|113968892|ref|YP_732685.1| histone family protein DNA-binding protein [Shewanella sp. MR-4]
 gi|113883576|gb|ABI37628.1| histone family protein DNA-binding protein [Shewanella sp. MR-4]
          Length = 90

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I++   +++ ++ R + +    I +S   G+ I I  F +F    + +R G
Sbjct: 1  MNKTELIAKIAENADITKAEAARALKSFEAAITESMKNGDKISIVGFGSFETSTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I    V  FKA   L+  + 
Sbjct: 61 RNPQTGKEIQIAEATVPKFKAGKTLRDSVN 90


>gi|257094466|ref|YP_003168107.1| integration host factor subunit beta [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
 gi|257046990|gb|ACV36178.1| integration host factor, beta subunit [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
          Length = 97

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+SDL+  +++ F  L  KD+   V  +   + ++   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSDLIAQLAERFPQLVAKDADLSVKMILEAMAEALSNGDRIEIRGFGSFALNYRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN ++ ++V +  + V  FKA   L++R+   + 
Sbjct: 61 GRNPKSGEKVNVPEKWVPHFKAGKELRERVDGSLE 95


>gi|291614260|ref|YP_003524417.1| histone family protein DNA-binding protein [Sideroxydans
          lithotrophicus ES-1]
 gi|291584372|gb|ADE12030.1| histone family protein DNA-binding protein [Sideroxydans
          lithotrophicus ES-1]
          Length = 91

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 48/89 (53%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +SDL+++I+K   +S+  + R +      I  S  +GE + +  F TF+V ++ +R GR
Sbjct: 3  NKSDLIEAIAKSADISKAAAGRALDATIESIKKSLKKGELVSLVGFGTFYVGKRAARNGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N +T   +KI   +V  F+A   LK  + 
Sbjct: 63 NPRTGATIKIKAAKVPKFRAGKGLKDAVN 91


>gi|91784810|ref|YP_560016.1| integration host factor subunit beta [Burkholderia xenovorans
           LB400]
 gi|123062639|sp|Q13VC5|IHFB_BURXL RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|91688764|gb|ABE31964.1| Integration host factor, beta subunit [Burkholderia xenovorans
           LB400]
          Length = 107

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 2/104 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + ++   G  I+I  F +F + ++ SRV
Sbjct: 1   MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSEALANGHRIEIRGFGSFGLNRRPSRV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           GRN ++ ++V +  + V  FK    L++R+ D   G     +D 
Sbjct: 61  GRNPKSGEKVLVPEKYVPHFKPGKELRERV-DRRAGEPLKAEDP 103


>gi|145588688|ref|YP_001155285.1| integration host factor, beta subunit [Polynucleobacter
          necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047094|gb|ABP33721.1| integration host factor, beta subunit [Polynucleobacter
          necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 114

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 54/92 (58%), Gaps = 1/92 (1%)

Query: 3  KTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + ITRS+LV+S++++F  L  +D    V TL + +  +   G+ I++    +F +  + +
Sbjct: 7  QAITRSELVESLAEQFPQLLPRDVELAVKTLLDTMTQALAEGKRIELRGVGSFVLHHRPA 66

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R GRN ++ ++V I  +RV  FK    L++R+
Sbjct: 67 RTGRNPKSGEKVLIPEKRVPHFKPGKELRERV 98


>gi|256828814|ref|YP_003157542.1| histone family protein DNA-binding protein [Desulfomicrobium
          baculatum DSM 4028]
 gi|256577990|gb|ACU89126.1| histone family protein DNA-binding protein [Desulfomicrobium
          baculatum DSM 4028]
          Length = 91

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 56/91 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++S++++  +S  +++  V + F+ + D+ +RG+ I+I  F +F +KQ    +G
Sbjct: 1  MNKSELIQSLAEKIKISNDEASTIVDSFFDSMRDALLRGDRIEIRGFGSFKIKQYEGYIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + V++ P+++  FKA   L   +  
Sbjct: 61 RNPKTGESVQVKPKKMPFFKAGKGLLDYLNG 91


>gi|217968881|ref|YP_002354115.1| histone family protein DNA-binding protein [Thauera sp. MZ1T]
 gi|217506208|gb|ACK53219.1| histone family protein DNA-binding protein [Thauera sp. MZ1T]
          Length = 91

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + + V++++    + R  + R ++ + + I +   +GE +  + F +F V Q+ +R G
Sbjct: 1  MNKGEFVEALADRLDVHRAQADRALSAVLDIIAEQLAKGEKVAFTGFGSFEVSQRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT   ++I    V  F A + LK  +  
Sbjct: 61 RNPQTGATIEIAASSVPKFTAGATLKASVNK 91


>gi|238920344|ref|YP_002933859.1| integration host factor subunit beta [Edwardsiella ictaluri
          93-146]
 gi|294636909|ref|ZP_06715236.1| integration host factor, beta subunit [Edwardsiella tarda ATCC
          23685]
 gi|259492035|sp|C5BBR9|IHFB_EDWI9 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|238869913|gb|ACR69624.1| integration host factor, beta subunit, putative [Edwardsiella
          ictaluri 93-146]
 gi|291089862|gb|EFE22423.1| integration host factor, beta subunit [Edwardsiella tarda ATCC
          23685]
          Length = 94

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  L  K     V  +   +  +   GE I+I  F +F +  +  R+
Sbjct: 1  MTKSELIERLASQQPHLPAKAVEDAVKEMLEHMAATLADGERIEIRGFGSFSLHYRAPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T ++V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGEKVELEGKYVPHFKPGKELRDRAN 91


>gi|239814795|ref|YP_002943705.1| histone family protein DNA-binding protein [Variovorax paradoxus
          S110]
 gi|319792644|ref|YP_004154284.1| histone family protein DNA-binding protein [Variovorax paradoxus
          EPS]
 gi|239801372|gb|ACS18439.1| histone family protein DNA-binding protein [Variovorax paradoxus
          S110]
 gi|315595107|gb|ADU36173.1| histone family protein DNA-binding protein [Variovorax paradoxus
          EPS]
          Length = 90

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+K   +S+  +TR + +    I  +  +G ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIAKNADISKAAATRALESTIGAIRTTLKKGGSVSLVGFGTFAVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   ++  F+    LK  + 
Sbjct: 61 RNPRTGDAIKIKAAKIPKFRPGKALKDALN 90


>gi|261253451|ref|ZP_05946024.1| integration host factor beta subunit [Vibrio orientalis CIP
          102891]
 gi|260936842|gb|EEX92831.1| integration host factor beta subunit [Vibrio orientalis CIP
          102891]
          Length = 93

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + +++  LS K+    V  +   +  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLEGGDRIEIRGFGSFSLHFREPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L++R+ 
Sbjct: 61 GRNPKTGDKVELEGKFVPHFKPGKELRERVN 91


>gi|91788925|ref|YP_549877.1| nucleoid protein Hbs [Polaromonas sp. JS666]
 gi|91698150|gb|ABE44979.1| bacterial nucleoid protein Hbs [Polaromonas sp. JS666]
          Length = 90

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+K   +S+  +TR + +    +  +  +G ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIAKHADISKAAATRALESTIGAVKTTLKKGGSVSLVGFGTFAVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   +V  F+    LK  + 
Sbjct: 61 RNPRTGDAIKIKAAKVPKFRPGKALKDALN 90


>gi|253990302|ref|YP_003041658.1| integration host factor subunit beta [Photorhabdus asymbiotica
          subsp. asymbiotica ATCC 43949]
 gi|253781752|emb|CAQ84915.1| integration host factor beta-subunit (ihf-beta) [Photorhabdus
          asymbiotica]
          Length = 94

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +S K     V  + + +  +   GE I++  F +F +  +  RV
Sbjct: 1  MTKSELIERLAGQQSHISAKTVEDAVKEMLDHMAVTLADGERIEVRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R+ 
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91


>gi|322381499|ref|ZP_08055479.1| non-specific DNA-binding protein Hbsu/signal recognition
           particle-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|322382684|ref|ZP_08056542.1| non-specific DNA-binding protein Hbsu/signal recognition
           particle-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153345|gb|EFX45775.1| non-specific DNA-binding protein Hbsu/signal recognition
           particle-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321154541|gb|EFX46837.1| non-specific DNA-binding protein Hbsu/signal recognition
           particle-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 119

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 55/90 (61%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +  LV+ ++K  G S+K++ + VT + + I ++  +G+ +++  F  F V+ + +R+G
Sbjct: 28  MNKEQLVEVVAKSSGFSKKNAEKAVTHVLDSIFEALKQGKEVQLVGFGKFDVRSREARMG 87

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN +T +EV++   +V VF A   LKK + 
Sbjct: 88  RNRKTGEEVELPAGKVPVFTAGITLKKALN 117


>gi|307825283|ref|ZP_07655503.1| integration host factor, beta subunit [Methylobacter
          tundripaludum SV96]
 gi|307733739|gb|EFO04596.1| integration host factor, beta subunit [Methylobacter
          tundripaludum SV96]
          Length = 101

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+++++K +  L++KD    V  +  ++  +   GE I+I  F +F +  +  R+
Sbjct: 1  MTKSELIEALAKHQPHLAQKDVEIAVKCIIEQMNQALSSGERIEIRGFGSFSLHLRPPRM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  + V  FK    L+ R+
Sbjct: 61 GRNPKTGESVALSKKHVPHFKPGKELRDRV 90


>gi|89886013|ref|YP_516210.1| DNA-binding protein HU-beta [Sodalis phage phiSG1]
 gi|89191748|dbj|BAE80495.1| DNA-binding protein HU-beta [Sodalis phage phiSG1]
 gi|125470043|gb|ABN42235.1| gp28 [Sodalis phage phiSG1]
          Length = 90

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L++++S++  +S+  +   +  + + +  S   G+ +KI+ F TF VK +  R G
Sbjct: 1  MNKSHLIRAVSEKTDISKIKAGFVIDAITDAVTQSLASGDDVKITGFGTFEVKTRAERPG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I   RV  F+A   LK+ +
Sbjct: 61 RNPKTGEAMTIPAARVPAFRARKGLKEAV 89


>gi|212702487|ref|ZP_03310615.1| hypothetical protein DESPIG_00504 [Desulfovibrio piger ATCC
          29098]
 gi|212674148|gb|EEB34631.1| hypothetical protein DESPIG_00504 [Desulfovibrio piger ATCC
          29098]
          Length = 91

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 53/91 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K++++E  L   D++  V T  + + DS + G+ I+I  F +F +K+     G
Sbjct: 1  MNKSELIKALAEESNLPFDDASLVVNTFIDAMKDSLIAGDRIEIRGFGSFKIKEYSGYAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + V + P+R+  F+A   LK+ I  
Sbjct: 61 RNPKTGESVSVVPKRLPFFRAGKELKEYINQ 91


>gi|332529106|ref|ZP_08405070.1| histone family protein DNA-binding protein [Hylemonella gracilis
          ATCC 19624]
 gi|332041329|gb|EGI77691.1| histone family protein DNA-binding protein [Hylemonella gracilis
          ATCC 19624]
          Length = 90

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+K   +S+  +TR + ++   +  +  +G ++ +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIAKNADISKAAATRALESVIGAVKTTLKKGGSVSLVGFGTFAVTKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   ++  F+    LK  + 
Sbjct: 61 RNPRTGDTIKIKAAKLPKFRPGKALKDALN 90


>gi|160903339|ref|YP_001568920.1| histone family protein DNA-binding protein [Petrotoga mobilis
          SJ95]
 gi|160360983|gb|ABX32597.1| histone family protein DNA-binding protein [Petrotoga mobilis
          SJ95]
          Length = 90

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLV + +K+  +++KD+  FV    + + ++  +GE +K+  F TF V+++ +R G
Sbjct: 1  MNKKDLVDAFAKKANVTKKDAESFVDAFVDVVSEALSKGEEVKLVGFGTFKVQKRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N QT + +KI  + V  F     LK  + 
Sbjct: 61 VNPQTGKAIKIPEKMVPKFVPGKELKDMVK 90


>gi|14194853|sp|Q9F297|IHFA_NEIGO RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|9965582|gb|AAG10094.1| IfhB [Neisseria gonorrhoeae]
          Length = 96

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 4  TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T+T+++L   +  +   +++  +   V   F EI  +   GE IKIS F  F ++ K  R
Sbjct: 2  TLTKAELADILVDKVSNVTKNSAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN +T +EV I  RRVV F AS  LK  + 
Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLKGMVE 93


>gi|158339956|ref|YP_001521126.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
 gi|158310197|gb|ABW31812.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
          Length = 91

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV SI+++ G ++K +   ++ +   I DS   GE + +  F +F  + + +R G
Sbjct: 1  MNKGELVDSIAEKSGATKKQADAILSAVTETIIDSVSSGEKVTLVGFGSFEARDRKARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +++ I   +  VF A  + K+++ D
Sbjct: 61 RNPQTGKKLTIPATKAPVFSAGKVFKEQVKD 91


>gi|126640672|ref|YP_001083656.1| integration host factor subunit alpha [Acinetobacter baumannii
          ATCC 17978]
          Length = 90

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 52/87 (59%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          +   +S+   L+R+++ + V   F+EI  + + GE +K+S F  F ++ K  R GRN +T
Sbjct: 1  MADHLSELTSLNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRERPGRNPKT 60

Query: 70 NQEVKIDPRRVVVFKASSILKKRIMDD 96
           +E+ I  RRVV F+A    ++R+ ++
Sbjct: 61 GEEIPISARRVVTFRAGQKFRQRVGNE 87


>gi|119776290|ref|YP_929030.1| histone-like DNA-binding protein [Shewanella amazonensis SB2B]
 gi|119768790|gb|ABM01361.1| histone-like DNA-binding protein [Shewanella amazonensis SB2B]
          Length = 90

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R++L+  I++   L++ ++ R + +    +  +   G+ I I  F +F    +  R G
Sbjct: 1  MNRTELIAKIAESADLTKAEAGRALKSFEEAVTAAMKDGDKISIVGFGSFETSTRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    +  FKA   L+  + 
Sbjct: 61 RNPQTGKEIKIPAATIPKFKAGKALRDSVN 90


>gi|218134050|ref|ZP_03462854.1| hypothetical protein BACPEC_01940 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991425|gb|EEC57431.1| hypothetical protein BACPEC_01940 [Bacteroides pectinophilus ATCC
           43243]
          Length = 96

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 53/96 (55%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++LV +++++  LS+KD+   +  L   I +   +GE +++  F TF V ++ +R G
Sbjct: 1   MNKTELVAAMAEKAELSKKDAEAALKALTATIAEELTKGEKVQLVGFGTFEVSERAARTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           +N QT + +KI   +   FKA   LK  +    + +
Sbjct: 61  KNPQTGKAIKIPASKAPKFKAGKALKDTVNSTKKKK 96


>gi|307545457|ref|YP_003897936.1| integration host factor subunit beta [Halomonas elongata DSM
          2581]
 gi|307217481|emb|CBV42751.1| K05788 integration host factor subunit beta [Halomonas elongata
          DSM 2581]
          Length = 98

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I+ ++  LS KD    V  + ++I  +   G  ++I  F +F +  +  R 
Sbjct: 1  MTKSELIEQIAMRQPELSVKDVETAVRMILDDITGTLANGGRVEIRGFGSFSLHYREPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  + V  FK    L++++
Sbjct: 61 GRNPKTGDPVALSGKFVPHFKPGKELREQV 90


>gi|49474845|ref|YP_032886.1| integration host factor subunit beta [Bartonella henselae str.
          Houston-1]
 gi|49237650|emb|CAF26830.1| Integration host factor beta-subunit [Bartonella henselae str.
          Houston-1]
          Length = 92

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  +F EI  + V G  +++  F  F VK + +R 
Sbjct: 1  MVKSELVQIIARHNPHLFQRDVENIVNAIFEEISTALVNGNRVELRGFGAFSVKSRSARN 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V ++ + +  FK    L+ R+  
Sbjct: 61 GRNPRTGEAVMVEEKWIPFFKTGKDLRDRLNQ 92


>gi|330806808|ref|YP_004351270.1| DNA-binding protein, alpha subunit [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327374916|gb|AEA66266.1| Putative DNA-binding protein, alpha subunit [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 91

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L  +I+++  L+++ + R +  +  EI  +  R +++ +  F TF  + +G+R G
Sbjct: 1  MRKPELAAAIAEKADLTKEQANRVLNAVLEEITGALHRKDSVTLVGFGTFLQRHRGARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT + VKI     V FK    LK  + 
Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKFLKDSVN 90


>gi|319898205|ref|YP_004158298.1| integration host factor beta chain [Bartonella clarridgeiae 73]
 gi|319402169|emb|CBI75695.1| integration host factor beta chain [Bartonella clarridgeiae 73]
          Length = 92

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D+   V  +F EI  +   G+ +++  F  F +K + +R 
Sbjct: 1  MVKSELVQIIARHNPHLMQRDAENVVNAIFEEISAALANGQRVELRGFGAFSIKTRLARN 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T + V ++ + V  FK    L+ R+ 
Sbjct: 61 GRNPRTGETVMVEEKWVPFFKTGKDLRDRLN 91


>gi|167623972|ref|YP_001674266.1| integration host factor subunit beta [Shewanella halifaxensis
          HAW-EB4]
 gi|189045044|sp|B0TT46|IHFB_SHEHH RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|167353994|gb|ABZ76607.1| integration host factor, beta subunit [Shewanella halifaxensis
          HAW-EB4]
          Length = 95

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  LS K+    +  +  ++ D+   G+ I+I  F +F +  +  R 
Sbjct: 1  MTKSELIEKLATRQSQLSAKEVEAAIKEMLEQMADTLEAGDRIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V+++ + V  FK    L++R+
Sbjct: 61 GRNPKTGTSVELEGKYVPHFKPGKELRERV 90


>gi|145298755|ref|YP_001141596.1| integration host factor subunit beta [Aeromonas salmonicida
          subsp. salmonicida A449]
 gi|330830009|ref|YP_004392961.1| integration host factor subunit beta [Aeromonas veronii B565]
 gi|166918538|sp|A4SLS6|IHFB_AERS4 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|142851527|gb|ABO89848.1| integration host factor beta-subunit [Aeromonas salmonicida
          subsp. salmonicida A449]
 gi|328805145|gb|AEB50344.1| Integration host factor subunit beta [Aeromonas veronii B565]
          Length = 94

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+SDL++ ++     +  KD    +  +  ++  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSDLIEQLAASRMHMPAKDVEAAIKEILEQMASTLQNGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V++  + V  FK    L++R+ 
Sbjct: 61 GRNPKTGDKVELTGKYVPHFKPGKELRERVN 91


>gi|83310022|ref|YP_420286.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1]
 gi|82944863|dbj|BAE49727.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magneticum AMB-1]
          Length = 92

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++    +++ D+   +  +F  I  +   G+ +++  F +F V  + +R G
Sbjct: 1  MNKSELIAAVADGANMTKADAASAIDAVFEAITAAMKSGDDVRLVGFGSFSVSARPAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + + I   +   F A   LK  I  
Sbjct: 61 RNPQTGKTLTIAASKSAKFTAGKSLKDTING 91


>gi|296533549|ref|ZP_06896119.1| integration host factor beta subunit [Roseomonas cervicalis ATCC
          49957]
 gi|296266119|gb|EFH12174.1| integration host factor beta subunit [Roseomonas cervicalis ATCC
          49957]
          Length = 108

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  ++     L + D    V T+FNEI  +  RG+ +++  F  F  KQ+ +R 
Sbjct: 1  MTKSELIAQLAAANPHLRQPDVELIVGTIFNEITAALSRGDRVELRGFGAFSAKQRDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V++  + V  FK    L++R+   
Sbjct: 61 GRNPRTGEAVEVAGKAVPYFKPGKELRERVNGG 93


>gi|146309415|ref|YP_001189880.1| nucleoid protein HU alpha subunit [Pseudomonas mendocina ymp]
 gi|145577616|gb|ABP87148.1| bacterial nucleoid protein HU alpha subunit [Pseudomonas
          mendocina ymp]
          Length = 90

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L  +I+++  L++  + R +  +  EI  +  R +++ +  F TF  + +G+R G
Sbjct: 1  MRKPELAAAIAEKADLTKDQANRVLNAVLEEITGALNRKDSVTLVGFGTFVQRHRGARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT Q VKI     V FK    LK  + 
Sbjct: 61 KNPQTGQPVKIKASNTVAFKPGKSLKDAVN 90


>gi|120597447|ref|YP_962021.1| histone family protein DNA-binding protein [Shewanella sp.
          W3-18-1]
 gi|126172756|ref|YP_001048905.1| histone family protein DNA-binding protein [Shewanella baltica
          OS155]
 gi|146294412|ref|YP_001184836.1| histone family protein DNA-binding protein [Shewanella
          putrefaciens CN-32]
 gi|153002323|ref|YP_001368004.1| histone family protein DNA-binding protein [Shewanella baltica
          OS185]
 gi|160877047|ref|YP_001556363.1| histone family protein DNA-binding protein [Shewanella baltica
          OS195]
 gi|217974911|ref|YP_002359662.1| histone family protein DNA-binding protein [Shewanella baltica
          OS223]
 gi|304410864|ref|ZP_07392481.1| histone family protein DNA-binding protein [Shewanella baltica
          OS183]
 gi|307304965|ref|ZP_07584715.1| histone family protein DNA-binding protein [Shewanella baltica
          BA175]
 gi|120557540|gb|ABM23467.1| histone family protein DNA-binding protein [Shewanella sp.
          W3-18-1]
 gi|125995961|gb|ABN60036.1| histone family protein DNA-binding protein [Shewanella baltica
          OS155]
 gi|145566102|gb|ABP77037.1| histone family protein DNA-binding protein [Shewanella
          putrefaciens CN-32]
 gi|151366941|gb|ABS09941.1| histone family protein DNA-binding protein [Shewanella baltica
          OS185]
 gi|160862569|gb|ABX51103.1| histone family protein DNA-binding protein [Shewanella baltica
          OS195]
 gi|217500046|gb|ACK48239.1| histone family protein DNA-binding protein [Shewanella baltica
          OS223]
 gi|304350761|gb|EFM15162.1| histone family protein DNA-binding protein [Shewanella baltica
          OS183]
 gi|306912367|gb|EFN42791.1| histone family protein DNA-binding protein [Shewanella baltica
          BA175]
 gi|315269251|gb|ADT96104.1| histone family protein DNA-binding protein [Shewanella baltica
          OS678]
 gi|319427766|gb|ADV55840.1| histone family protein DNA-binding protein [Shewanella
          putrefaciens 200]
          Length = 90

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I++   L++ ++ R + +    I +S   G+ I I  F +F    + +R G
Sbjct: 1  MNKTELIAKIAENADLTKVEAARALKSFEAAITESMKNGDKISIVGFGSFETATRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I    V  FKA   L+  + 
Sbjct: 61 RNPQTGKEIQIAEATVPKFKAGKTLRDSVN 90


>gi|313499440|gb|ADR60806.1| IhfA [Pseudomonas putida BIRD-1]
          Length = 92

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 47/85 (55%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          + + + +E GL+++++   V   F EI  +    E +K+S F  F ++ K  R GRN +T
Sbjct: 1  MAERLYEELGLNKREAKELVELFFEEIRHALEENEQVKLSGFGNFDLRDKRQRPGRNPKT 60

Query: 70 NQEVKIDPRRVVVFKASSILKKRIM 94
           +E+ I  RRVV F+    LK R+ 
Sbjct: 61 GEEIPITARRVVTFRPGQKLKARVE 85


>gi|299066877|emb|CBJ38072.1| Integration host factor subunit beta (IHF-beta) [Ralstonia
          solanacearum CMR15]
          Length = 140

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 55/95 (57%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV+ ++  F  L  +D+   V T+ + + D+   G  I+I  F +F + ++  RV
Sbjct: 3  MTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN ++ ++V +  +RV  FKA   L++R+   + 
Sbjct: 63 GRNPKSGEKVLVPEKRVPHFKAGKELRERVDRSLE 97


>gi|302878840|ref|YP_003847404.1| histone family protein DNA-binding protein [Gallionella
          capsiferriformans ES-2]
 gi|302581629|gb|ADL55640.1| histone family protein DNA-binding protein [Gallionella
          capsiferriformans ES-2]
          Length = 90

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDLV +I+    +S+  + R +    N I  +   GE + +  F  F V ++  RVG
Sbjct: 1  MNKSDLVDAIATSADISKAAAGRALDGALNAIKTALKNGEEVSLVGFGAFTVGERAGRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   + I   +V  F+A   LK  + 
Sbjct: 61 RNPQTGAAITIKAAKVPKFRAGKGLKDAVN 90


>gi|71276210|ref|ZP_00652489.1| Integration host factor, beta subunit [Xylella fastidiosa Dixon]
 gi|71900469|ref|ZP_00682600.1| Integration host factor, beta subunit [Xylella fastidiosa Ann-1]
 gi|14194873|sp|Q9PAQ8|IHFB_XYLFA RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|71162971|gb|EAO12694.1| Integration host factor, beta subunit [Xylella fastidiosa Dixon]
 gi|71729775|gb|EAO31875.1| Integration host factor, beta subunit [Xylella fastidiosa Ann-1]
          Length = 104

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 1/101 (0%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L++ ++K    L   D    V +L   +  +   G+ I+I  F +F +  +  R 
Sbjct: 1   MTKSELIEILTKRQAHLKSDDVDLAVKSLLEMMGGALSEGDRIEIRGFGSFSLHYRPPRC 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           GRN +T + V +  + V  FK    L++R+   +   +C  
Sbjct: 61  GRNPKTGESVALPGKYVPHFKPGKELRERVASVVPLAECGD 101


>gi|269139519|ref|YP_003296220.1| integration host factor, beta subunit [Edwardsiella tarda EIB202]
 gi|267985180|gb|ACY85009.1| integration host factor, beta subunit [Edwardsiella tarda EIB202]
 gi|304559408|gb|ADM42072.1| Integration host factor beta subunit [Edwardsiella tarda FL6-60]
          Length = 94

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  L  K     V  +   +  +   GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLASQQPHLPAKAVEDAVKEMLEHMAATLADGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T ++V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGEKVELEGKYVPHFKPGKELRDRAN 91


>gi|253996886|ref|YP_003048950.1| integration host factor subunit beta [Methylotenera mobilis JLW8]
 gi|253983565|gb|ACT48423.1| integration host factor, beta subunit [Methylotenera mobilis
          JLW8]
          Length = 93

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  +++ F  L  KD+   V  + + + D+   GE I+I  F +F +  +  R+
Sbjct: 1  MTKSELITLLAERFPQLVMKDAELSVKAILDAMSDNLATGERIEIRGFGSFSLNYRPPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  +V++  + V  FKA   L++R+
Sbjct: 61 GRNPKTGSKVEVPEKHVPHFKAGKELRERV 90


>gi|194288914|ref|YP_002004821.1| integration host factor subunit beta [Cupriavidus taiwanensis LMG
          19424]
 gi|193222749|emb|CAQ68752.1| Integration host factor, beta subunit [Cupriavidus taiwanensis
          LMG 19424]
          Length = 141

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV+ ++  F  L  +D+   V T+ + + ++   G  I+I  F +F + ++  RV
Sbjct: 3  MTKSELVEKLAARFPQLLLRDADISVKTILDAMSEALADGHRIEIRGFGSFGLNRRPPRV 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V +  +RV  FKA   L++R+
Sbjct: 63 GRNPKSGERVLVPEKRVPHFKAGKELRERV 92


>gi|167625721|ref|YP_001676015.1| histone family protein DNA-binding protein [Shewanella
          halifaxensis HAW-EB4]
 gi|167355743|gb|ABZ78356.1| histone family protein DNA-binding protein [Shewanella
          halifaxensis HAW-EB4]
          Length = 90

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  +++   L++ ++ R + +    + ++   GE I I  F +F   ++ +R G
Sbjct: 1  MNKTELVAKMAESAELTKAEAARALKSFEVTVAEAMKNGEKISIVGFGSFETTERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I    V  FKA   LK  + 
Sbjct: 61 RNPQTGKEIQIPAATVPKFKAGKTLKDSVN 90


>gi|240849695|ref|YP_002971083.1| integration host factor beta subunit [Bartonella grahamii as4aup]
 gi|240266818|gb|ACS50406.1| integration host factor beta subunit [Bartonella grahamii as4aup]
          Length = 92

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  +F EI  +   G  +++  F  F VK + +R 
Sbjct: 1  MVKSELVQIIARHNPHLFQRDVENIVNAIFEEISTALANGNRVELRGFGAFSVKSRSARN 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V ++ + +  FK    L+ R+  
Sbjct: 61 GRNPRTGEAVSVEEKWIPFFKTGKDLRDRLNQ 92


>gi|241662464|ref|YP_002980824.1| integration host factor subunit beta [Ralstonia pickettii 12D]
 gi|309781046|ref|ZP_07675784.1| integration host factor, beta subunit [Ralstonia sp. 5_7_47FAA]
 gi|240864491|gb|ACS62152.1| integration host factor, beta subunit [Ralstonia pickettii 12D]
 gi|308920112|gb|EFP65771.1| integration host factor, beta subunit [Ralstonia sp. 5_7_47FAA]
          Length = 142

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV+ ++  F  L  +D+   V T+ + + D+   G  I+I  F +F + ++  RV
Sbjct: 3   MTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 62

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           GRN ++ ++V +  +RV  FKA   L++R+   +  R+        P+ S
Sbjct: 63  GRNPKSGEKVLVPEKRVPHFKAGKELRERVDRSLE-RQGEPSSEGEPAVS 111


>gi|24372142|ref|NP_716184.1| HU family DNA-binding protein [Shewanella oneidensis MR-1]
 gi|24346038|gb|AAN53629.1|AE015502_3 DNA-binding protein, HU family [Shewanella oneidensis MR-1]
          Length = 90

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I++   +++  +TR + +    I +S   G+ I I  F +F    + +R G
Sbjct: 1  MNKTELIAKIAENADITKAQATRALKSFEAAITESMKNGDKISIVGFGSFETTTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I    V  FKA   L+  + 
Sbjct: 61 RNPQTGKEIQIAEATVPKFKAGKTLRDSVN 90


>gi|94265743|ref|ZP_01289479.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|94271834|ref|ZP_01292021.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|93450327|gb|EAT01564.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|93453718|gb|EAT04096.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
          Length = 94

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/93 (40%), Positives = 62/93 (66%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+++LV+ I ++  LSR+++   V    +   D+  RGE + +S F  F+V+QK +R 
Sbjct: 2  TLTKAELVRRIHQQHDLSREEAVAVVDNFLDIAKDTLGRGEDLLLSGFGKFNVRQKKARR 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN QT +E+ + PR+V+ FKAS IL++RI  D
Sbjct: 62 GRNPQTGEELTLSPRKVITFKASGILRQRINGD 94


>gi|190014801|ref|YP_001967565.1| VirN [Agrobacterium tumefaciens]
 gi|71849604|gb|AAZ50552.1| VirN [Agrobacterium tumefaciens]
          Length = 100

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 3/100 (3%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV  ++     L R+D+   V ++ +EI  +  RGE ++I  F TF V+ + +R 
Sbjct: 1   MIKSELVDLLAARNPYLHRRDAENAVDSVLDEITGALERGERVEIRGFGTFVVRHRPARS 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIM--DDMRGRK 101
           GRN      V ++ + V  F+A   +K R+   ++ RG++
Sbjct: 61  GRNPLNGNAVLVEEKWVPFFRAGKEIKDRLNMAEEPRGKE 100


>gi|241763693|ref|ZP_04761742.1| histone family protein DNA-binding protein [Acidovorax
          delafieldii 2AN]
 gi|241367082|gb|EER61456.1| histone family protein DNA-binding protein [Acidovorax
          delafieldii 2AN]
          Length = 90

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+    +S+  + R + +    +  +  +G  + +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIANNADISKAAAARALESTIEAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   +V  F+    LK  + 
Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALKDALN 90


>gi|259909249|ref|YP_002649605.1| HopD, DNA-binding protein HU-beta (Synonym HupB) [Erwinia
          pyrifoliae Ep1/96]
 gi|224964871|emb|CAX56393.1| HopD, DNA-binding protein HU-beta (Synonym HupB) [Erwinia
          pyrifoliae Ep1/96]
 gi|283479300|emb|CAY75216.1| transcriptional regulator HU subunit beta [Erwinia pyrifoliae DSM
          12163]
          Length = 90

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L++ I+ +  +S+    R +    + +  S   GE + + +F TF V+++  R G
Sbjct: 1  MNKSQLIEKIAADADVSKASVGRILEAFIDTVTKSLQVGEEVALLNFGTFSVRERAERPG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I  R+V  F+A   L++ + 
Sbjct: 61 RNPQTGKEITIAARKVAGFRAGKELREAVK 90


>gi|319776256|ref|YP_004138744.1| integration host factor (IHF), DNA-binding protein subunit alpha
          [Haemophilus influenzae F3047]
 gi|329123395|ref|ZP_08251959.1| integration host factor subunit alpha [Haemophilus aegyptius ATCC
          11116]
 gi|317450847|emb|CBY87071.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Haemophilus influenzae F3047]
 gi|327470977|gb|EGF16432.1| integration host factor subunit alpha [Haemophilus aegyptius ATCC
          11116]
          Length = 96

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 52/92 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+ D+V+ +S ++ LS++D+   V     EI  S   G+ +K+S F  F ++ K SR 
Sbjct: 3  TITKIDIVEYLSDKYHLSKQDTKNVVENFLEEIRLSLESGQDVKLSGFGNFELRDKSSRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T   V +  RRVV FK    L+ R+  
Sbjct: 63 GRNPKTGDVVPVSARRVVAFKPGQKLRARVEK 94


>gi|134094955|ref|YP_001100030.1| DNA-binding protein HU-beta [Herminiimonas arsenicoxydans]
 gi|133738858|emb|CAL61905.1| DNA-binding protein HU-beta (NS1) (HU-1) [Herminiimonas
          arsenicoxydans]
          Length = 90

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+    +S+  +TR +  +   +  +  +   + +  F TF V ++ +R G
Sbjct: 1  MNKTELIDHIAGSADISKAAATRALDAVIVAVKTTLKKNGTVTLVGFGTFSVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + +KI   +V  FK    LK  + 
Sbjct: 61 RNPRTGEAIKIKAAKVPKFKPGKALKDAVN 90


>gi|317153210|ref|YP_004121258.1| histone family protein DNA-binding protein [Desulfovibrio
          aespoeensis Aspo-2]
 gi|316943461|gb|ADU62512.1| histone family protein DNA-binding protein [Desulfovibrio
          aespoeensis Aspo-2]
          Length = 90

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  I+++  L++ ++ R +      +  + V    + ++ F TF V+Q+ +RVG
Sbjct: 1  MTKAELVVKIAEKANLTKANAERALNAFLESVEGNLVSEGKLTLTGFGTFVVEQRKARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  ++KI   +VV F+   +LK  I 
Sbjct: 61 RNPRTGADIKIPATKVVKFRPGKLLKDAIK 90


>gi|215778416|ref|YP_002261556.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238]
 gi|208011461|emb|CAQ81925.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238]
          Length = 91

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV  I++   LS++ +T  +    + I  +   G+ + +  F TF V  + +R G
Sbjct: 1  MNKKELVWHIAESADLSQQRATATLNATVDIITTALKEGDDVALVGFGTFKVNPRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   ++I     +VFKA   LK+ + 
Sbjct: 61 RNPKTGDMIQIAASNALVFKAGKALKETLN 90


>gi|17988077|ref|NP_540711.1| integration host factor subunit beta [Brucella melitensis bv. 1
           str. 16M]
 gi|17983827|gb|AAL52975.1| integration host factor beta-subunit [Brucella melitensis bv. 1
           str. 16M]
          Length = 101

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 1/97 (1%)

Query: 2   SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           SK + +S+LV+ I+ +   L ++D    V  +F+EI ++   G  +++  F  F VK + 
Sbjct: 5   SKAVIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRP 64

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           +R GRN +T + V ++ + V  FK    L+ R+   +
Sbjct: 65  ARSGRNPRTGETVDVEEKWVPFFKTGKKLRDRLNGAV 101


>gi|118577357|ref|YP_899597.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
 gi|118504862|gb|ABL01344.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
          Length = 101

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 56/90 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+ + +S   G+ ++++   V T+ + + D+   GE IKIS F  F+VKQK  R G
Sbjct: 1  MTKADITEKVSNTIGVPKREAADLVETVLSIMKDTLASGERIKISGFGCFNVKQKTDRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + + I  RRV+ FK SSIL+  I 
Sbjct: 61 RNPQTGERLTISARRVLTFKPSSILRDAIN 90


>gi|332967814|gb|EGK06913.1| integration host factor subunit alpha [Kingella kingae ATCC 23330]
          Length = 102

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 1/101 (0%)

Query: 4   TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           T+T+++L   +  +   L + D+   V   F EI  +  +GE IKIS F  F ++ K  R
Sbjct: 2   TLTKAELADILVDKVSNLGKNDAKEIVELFFEEIRTTLAQGEEIKISGFGNFQLRDKPQR 61

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
            GRN +T +EV I  RRVV F AS  LK  +      ++  
Sbjct: 62  PGRNPKTGEEVAITARRVVTFHASQKLKGMVEHYYEKQQAR 102


>gi|319407888|emb|CBI81540.1| integration host factor beta chain [Bartonella schoenbuchensis
          R1]
          Length = 92

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ I++    L ++D    V  +F EI  + + G+ I++  F  F VK + +R 
Sbjct: 1  MIKSELIQIIARYNPHLLQRDVENIVNAVFEEISTALINGDRIELRGFGAFAVKSRSARN 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V ++ + V  FK    L+ R+  
Sbjct: 61 GRNPRTGETVVVEKKWVPFFKTGKDLRDRLNK 92


>gi|160945509|ref|ZP_02092735.1| hypothetical protein FAEPRAM212_03038 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443240|gb|EDP20245.1| hypothetical protein FAEPRAM212_03038 [Faecalibacterium prausnitzii
           M21/2]
          Length = 108

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 49/90 (54%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +  +T++DL+  ++    +S+K + + V+ +F  +  +   GE I IS F TF V+++  
Sbjct: 17  ANNMTKTDLIAQVAANTEMSKKSAEQAVSAVFEALGKAMTEGEKITISGFGTFEVRERAE 76

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
           R G N +T + + I   R +VFK    LK 
Sbjct: 77  RQGINPRTREPITIAASRSIVFKPGKSLKD 106


>gi|166366854|ref|YP_001659127.1| DNA binding protein HU [Microcystis aeruginosa NIES-843]
 gi|166089227|dbj|BAG03935.1| DNA binding protein HU [Microcystis aeruginosa NIES-843]
          Length = 94

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 48/94 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  I+ +  +++K +   +T     I ++   G+ + +  F +F  +++ +R G
Sbjct: 1  MNKGELIDQIALKASVTKKQADAVLTAAIETIIEAVSEGDKVTLVGFGSFEARERQAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T  +++I   RV  F A  + K R+  D  
Sbjct: 61 RNPKTGDKMEIPATRVPAFSAGKLFKDRVAPDKE 94


>gi|330961377|gb|EGH61637.1| HU family DNA-binding protein [Pseudomonas syringae pv.
          maculicola str. ES4326]
          Length = 91

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + ++V +I+++  L++  ST  +  +   I D+  R +++ +  F TF  + +G+R G
Sbjct: 1  MRKPEVVAAIAEKADLTKDQSTLVLNAILEHITDALSRKDSVTLVGFGTFLQRHRGARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT + VKI     V FK    LK  + 
Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKALKDSVN 90


>gi|317486374|ref|ZP_07945202.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
 gi|316922363|gb|EFV43621.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
          Length = 91

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 56/90 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LVK+++ +  +S  ++T  V T  + + DS + G  ++I  F +F VK+ GS  G
Sbjct: 1  MNKSELVKALADQANISLDEATLVVNTFVDSMKDSLLEGGRVEIRGFGSFKVKEYGSYAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T ++V ++P+R+  F+A   LK+ + 
Sbjct: 61 RNPRTGEKVAVEPKRLPFFRAGKELKEYLN 90


>gi|108805105|ref|YP_645042.1| nucleoid protein Hbs [Rubrobacter xylanophilus DSM 9941]
 gi|108766348|gb|ABG05230.1| bacterial nucleoid protein Hbs [Rubrobacter xylanophilus DSM
          9941]
          Length = 90

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 54/89 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+++   S+ ++ RF       + DS  +GE ++I+ F  F+V+++ +R G
Sbjct: 1  MNKSELIQEIAEKTNGSKSEAQRFFDAFAEVVRDSLKKGEPVQITGFGKFYVQEREAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N QT Q++ I P +V  F A + LK+ I
Sbjct: 61 INPQTKQKITIPPSKVPKFTAGNSLKEAI 89


>gi|332879942|ref|ZP_08447627.1| DNA-binding protein HU-beta [Capnocytophaga sp. oral taxon 329
          str. F0087]
 gi|332682153|gb|EGJ55065.1| DNA-binding protein HU-beta [Capnocytophaga sp. oral taxon 329
          str. F0087]
          Length = 91

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+ E GLS+ D+ + V   F+ +  +   G+ + I  F  + V +K +R  
Sbjct: 1  MNKTELIDAIAAEAGLSKVDAKKAVEAFFSSVEKALTNGDKVSIVGFGAWSVAEKEARDA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + +K+  ++VV FKA + L   +  
Sbjct: 61 RNPRTGEVIKVPAKKVVKFKAGTELADAVNK 91


>gi|117919001|ref|YP_868193.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3]
 gi|117611333|gb|ABK46787.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3]
          Length = 90

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I++   +++ ++ R + +    I +S   G+ I I  F +F    + +R G
Sbjct: 1  MNKTELIAKIAENADITKAEAARALKSFEAAITESMKNGDKISIVGFGSFETTTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I    V  FKA   L+  + 
Sbjct: 61 RNPQTGKEIQIAEATVPKFKAGKTLRDSVN 90


>gi|120603250|ref|YP_967650.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris DP4]
 gi|46448590|gb|AAS95244.1| DNA-binding protein HU [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|120563479|gb|ABM29223.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris DP4]
          Length = 91

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++LV+ I  + GL ++  +   +      + D+   GE++  + F +F V  + +R 
Sbjct: 1  MTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I   +VV F    +LK  + 
Sbjct: 61 GRNPRTGEEIVIPAGKVVKFTPGKLLKDAVK 91


>gi|332993174|gb|AEF03229.1| integration host factor subunit beta [Alteromonas sp. SN2]
          Length = 95

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ +   +  KD    +  L  ++  +  +G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLADQARQIPAKDLELAIKELLEQMAQTLQKGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T + V++D + V  FK    L++R+   + 
Sbjct: 61 GRNPKTGETVELDGKYVPHFKPGKELRERVDASIA 95


>gi|330810587|ref|YP_004355049.1| transcription factor, unclassified [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327378695|gb|AEA70045.1| putative Transcription factor, unclassified [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 92

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 47/85 (55%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          + + + +E GL+++++   V   F EI  +    E +K+S F  F ++ K  R GRN +T
Sbjct: 1  MAERLYEELGLNKREAKELVELFFEEIRHALEDNEQVKLSGFGNFDLRDKRQRPGRNPKT 60

Query: 70 NQEVKIDPRRVVVFKASSILKKRIM 94
           +E+ I  RRVV F+    LK R+ 
Sbjct: 61 GEEIPITARRVVTFRPGQKLKARVE 85


>gi|167586533|ref|ZP_02378921.1| integration host factor, beta subunit [Burkholderia ubonensis Bu]
          Length = 107

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + D+  +G  I+I  F +F + ++ +RV
Sbjct: 1   MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           GRN ++ ++V++  + V  FK    L++R+ D   G     D+ 
Sbjct: 61  GRNPKSGEKVQVPEKFVPHFKPGKELRERV-DGRAGEPLKADEP 103


>gi|94676703|ref|YP_588518.1| DNA-binding protein HU-alpha [Baumannia cicadellinicola str. Hc
          (Homalodisca coagulata)]
 gi|94219853|gb|ABF14012.1| DNA-binding protein HU-alpha [Baumannia cicadellinicola str. Hc
          (Homalodisca coagulata)]
          Length = 94

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  IS +  LS+  +   + +    I +S   G+ +++  F TF +  +  R+G
Sbjct: 1  MNKTQLIDVISDKADLSKAQAKSALESTLAAITESLRGGDTVQLVGFGTFKINHRSERIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   L+K + 
Sbjct: 61 RNPQTGKEIKIAAVNVPTFISGKTLRKAVK 90


>gi|17545629|ref|NP_519031.1| integration host factor subunit beta [Ralstonia solanacearum
          GMI1000]
 gi|21362603|sp|Q8Y0Y3|IHFB_RALSO RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|17427922|emb|CAD14612.1| putative integration host factor beta-subunit (ihf-beta) protein
          [Ralstonia solanacearum GMI1000]
          Length = 138

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 55/95 (57%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV+ ++  F  L  +D+   V T+ + + D+   G  I+I  F +F + ++  RV
Sbjct: 1  MTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN ++ ++V +  +RV  FKA   L++R+   + 
Sbjct: 61 GRNPKSGEKVLVPEKRVPHFKAGKELRERVDRSLE 95


>gi|74316975|ref|YP_314715.1| integration host factor subunit beta [Thiobacillus denitrificans
          ATCC 25259]
 gi|74056470|gb|AAZ96910.1| integration host factor, beta subunit [Thiobacillus denitrificans
          ATCC 25259]
          Length = 94

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  ++ +    S  D    V T+ + +  +  RGE I+I  F +F +  + +R+
Sbjct: 1  MTKSELIAQLAGRHSQFSIADIEMAVKTILDALAKNLSRGERIEIRGFGSFSLSFRPARL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V++  + V  FKA   L+ R+
Sbjct: 61 GRNPKSGERVQVPAKYVPHFKAGKELRDRV 90


>gi|167771525|ref|ZP_02443578.1| hypothetical protein ANACOL_02895 [Anaerotruncus colihominis DSM
          17241]
 gi|167666165|gb|EDS10295.1| hypothetical protein ANACOL_02895 [Anaerotruncus colihominis DSM
          17241]
          Length = 92

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L+ +++++ GLS+KDS + V  +   I ++   G+ + +  F TF  K +  R G
Sbjct: 1  MTKAELITAVAEKSGLSKKDSEKAVGAIVETITEALKAGDKVALVGFGTFETKHRKERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N  T + + I    V  F A   LK  +  
Sbjct: 61 INPITQKPITIAAATVPAFSAGKALKDAVAG 91


>gi|114048970|ref|YP_739520.1| histone family protein DNA-binding protein [Shewanella sp. MR-7]
 gi|113890412|gb|ABI44463.1| histone family protein DNA-binding protein [Shewanella sp. MR-7]
          Length = 90

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I++   +++ ++ R + +    I +S   G+ I I  F +F    + +R G
Sbjct: 1  MNKTELIAKIAENADITKAEAARALKSFEAAITESMKNGDKISIVGFGSFETSIRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I    V  FKA   L+  + 
Sbjct: 61 RNPQTGKEIQIAEATVPKFKAGKTLRDSVN 90


>gi|322417739|ref|YP_004196962.1| histone family protein DNA-binding protein [Geobacter sp. M18]
 gi|320124126|gb|ADW11686.1| histone family protein DNA-binding protein [Geobacter sp. M18]
          Length = 94

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 50/94 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV++++K   + +  + + V    + +  +  +G+ + +  F +F V  + +R G
Sbjct: 1  MTKAELVEAVAKSANIPKAAAEKAVGAFISTVSGALKKGDRVTLVGFGSFEVASRQARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN QT +E+KI   +V  F+    LK  I    +
Sbjct: 61 RNPQTGKEIKIAEAKVPKFRPGKALKDAIAAKKK 94


>gi|298528155|ref|ZP_07015559.1| histone family protein DNA-binding protein [Desulfonatronospira
          thiodismutans ASO3-1]
 gi|298511807|gb|EFI35709.1| histone family protein DNA-binding protein [Desulfonatronospira
          thiodismutans ASO3-1]
          Length = 91

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K +++E  LS +++T  VT  F+ + ++   G+ ++I  F +F +K+     G
Sbjct: 1  MNKSELIKRLAEERDLSLEEATEIVTIFFDSMKEALQNGDRVEIRGFGSFKIKEYDGYQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + V + P+R+  F+A   LK+ + 
Sbjct: 61 RNPKTGKPVNVSPKRLPFFRAGKELKEYLN 90


>gi|71908179|ref|YP_285766.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB]
 gi|71847800|gb|AAZ47296.1| Histone-like bacterial DNA-binding protein [Dechloromonas aromatica
           RCB]
          Length = 126

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 1/105 (0%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +TRS+L+  +++ F  L +KD+   VT +   I  + V G  ++I  F  F +  +  R 
Sbjct: 1   MTRSELIALLAERFPQLVQKDAEMAVTEILGAIHAALVHGYRVEIRGFGVFDLNHRTPRQ 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT 108
            RN +T + V +  + V  FKA   L++R+M  +  ++   D   
Sbjct: 61  ARNPKTGEPVAVPAKWVPAFKAGKELRERVMASVSPQRLLIDQPA 105


>gi|117618262|ref|YP_856345.1| integration host factor subunit beta [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
 gi|166918537|sp|A0KJ94|IHFB_AERHH RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|117559669|gb|ABK36617.1| integration host factor, beta subunit [Aeromonas hydrophila
          subsp. hydrophila ATCC 7966]
          Length = 94

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+SDL++ ++     +  KD    +  +  ++  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSDLIEQLAASRMHMPAKDVEAAIKEILEQMASTLQNGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V++  + V  FK    L++R+ 
Sbjct: 61 GRNPKTGDKVELTGKYVPHFKPGKELRERVN 91


>gi|209523054|ref|ZP_03271611.1| histone family protein DNA-binding protein [Arthrospira maxima
          CS-328]
 gi|209496641|gb|EDZ96939.1| histone family protein DNA-binding protein [Arthrospira maxima
          CS-328]
          Length = 98

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 46/94 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  LV+  S + G+++K +   ++ +   I D+   GE + +  F +F  + + +R G
Sbjct: 1  MNKEQLVQETSIKAGVTKKQADAIISAICECIMDAVAEGEKVTLVGFGSFEARHRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN  T Q + I    V  F A    K+R+ ++  
Sbjct: 61 RNPSTGQPMTIPATTVPAFSAGKAFKERVANESN 94


>gi|329119849|ref|ZP_08248523.1| DNA-binding protein HU-beta [Neisseria bacilliformis ATCC
          BAA-1200]
 gi|327464005|gb|EGF10316.1| DNA-binding protein HU-beta [Neisseria bacilliformis ATCC
          BAA-1200]
          Length = 89

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++++++E  +S+  + + +  + N I  +  +G+ + +  F +F+V ++  R G
Sbjct: 1  MNKSELIEAMAQEADISKAAAAKALDGMVNAITAALKKGDTVTVVGFGSFYVGERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I   +   F+A   LK  +
Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKTLKDAL 89


>gi|320528391|ref|ZP_08029553.1| DNA-binding protein HU [Solobacterium moorei F0204]
 gi|320131305|gb|EFW23873.1| DNA-binding protein HU [Solobacterium moorei F0204]
          Length = 94

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 52/94 (55%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++T+ +  + + ++++  L++K++   +  +F+ +  +   G  + IS F  F VK + 
Sbjct: 1  MAETLNKKSIAELVAEKHNLTKKEAAEIIDLVFDTVSGTLKDGGRVDISGFGKFEVKTRA 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +R G N QT + + I   +V  FKA+  LK+ + 
Sbjct: 61 ARTGINPQTKETITIPESKVPGFKAAKNLKELVK 94


>gi|16125619|ref|NP_420183.1| integration host factor alpha-subunit [Caulobacter crescentus CB15]
 gi|221234370|ref|YP_002516806.1| integration host factor subunit alpha [Caulobacter crescentus
           NA1000]
 gi|81782690|sp|Q9A8I3|IHFA_CAUCR RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|254803513|sp|B8H546|IHFA_CAUCN RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|13422723|gb|AAK23351.1| integration host factor alpha-subunit [Caulobacter crescentus CB15]
 gi|220963542|gb|ACL94898.1| integration host factor alpha-subunit [Caulobacter crescentus
           NA1000]
          Length = 100

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 63/96 (65%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+TR+DL +++ +E GL+R+D    V    + + ++  +GE +K+S F  F V+ K +R+
Sbjct: 5   TLTRADLCEAVHEEVGLTRQDCAGLVERTLDLVAEALEQGETVKLSGFGVFQVRAKRARM 64

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           GRN +T +  +I+PRRV+ F+AS ++K RI   + G
Sbjct: 65  GRNPKTGEPAEIEPRRVIGFRASQVMKARIDRALGG 100


>gi|254461470|ref|ZP_05074886.1| integration host factor, alpha subunit [Rhodobacterales bacterium
          HTCC2083]
 gi|206678059|gb|EDZ42546.1| integration host factor, alpha subunit [Rhodobacteraceae
          bacterium HTCC2083]
          Length = 92

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/90 (44%), Positives = 59/90 (65%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DL +++ +E GLSR +S   V  +   + D+ V GE +KISSF TF V+ K +RVGRN +
Sbjct: 2  DLSEAVFREVGLSRNESAELVENILTHLSDALVEGEQVKISSFGTFSVRDKAARVGRNPK 61

Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          T QEV I+PRRV+ F+ S ++K R+    +
Sbjct: 62 TGQEVPINPRRVLTFRPSHLMKDRVASGNK 91


>gi|325983776|ref|YP_004296177.1| histone family protein DNA-binding protein [Nitrosomonas sp.
          AL212]
 gi|325533295|gb|ADZ28015.1| histone family protein DNA-binding protein [Nitrosomonas sp.
          AL212]
          Length = 93

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 45/88 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+++++     ++  +T  +  L   I ++   G  +++  F TF V ++ SR G
Sbjct: 1  MNKTELIEAVATRSQTTKTQTTALLNGLLEVIQETIASGNDVQLVGFGTFSVTERTSREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN  T + + I  ++VV FK    L   
Sbjct: 61 RNPATGETITIPAKKVVKFKPGKALSDA 88


>gi|254437270|ref|ZP_05050764.1| integration host factor, beta subunit [Octadecabacter antarcticus
          307]
 gi|198252716|gb|EDY77030.1| integration host factor, beta subunit [Octadecabacter antarcticus
          307]
          Length = 93

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L  +I+++   L ++D  R V T+F  + ++   G+ +++  F  F VK++ +R+
Sbjct: 1  MIRSELTDTIAEQNPHLYQRDVERIVNTIFERVIEAMSNGDRVELRGFGAFSVKKRDARL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V+++ + V  FK   +L+ R+  
Sbjct: 61 GRNPRTGEAVQVEEKHVPFFKTGKLLRDRLNG 92


>gi|170078570|ref|YP_001735208.1| DNA-binding protein HU [Synechococcus sp. PCC 7002]
 gi|169886239|gb|ACA99952.1| DNA-binding protein HU [Synechococcus sp. PCC 7002]
          Length = 92

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV  ++++ G+S+K +   ++     I ++   G+ + +  F +F  + + +R G
Sbjct: 1  MNKGELVDLVAEKAGISKKQADSVISATVEAIMETVANGDKVTLVGFGSFEPRHRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +TN++++I    V  F A    K+ + 
Sbjct: 61 RNPKTNEKMQIPATTVPAFSAGKQFKEMVA 90


>gi|56460462|ref|YP_155743.1| nucleoid DNA-binding protein, IHF beta subunit [Idiomarina
          loihiensis L2TR]
 gi|81678412|sp|Q5QZ46|IHFB_IDILO RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|56179472|gb|AAV82194.1| Bacterial nucleoid DNA-binding protein, IHF beta subunit
          [Idiomarina loihiensis L2TR]
          Length = 93

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L++ ++ +  L  K     V  +  ++  S  +G+ ++I  F +F +  +  RVG
Sbjct: 1  MTKSELIERLTLKHELPPKQVEASVKEILEQMVQSLSQGKRVEIRGFGSFSLHYRAPRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   V++D + V  FKA   L++R+
Sbjct: 61 RNPKTGDPVELDGKYVPHFKAGKELRERV 89


>gi|290473874|ref|YP_003466748.1| integration host factor (IHF) subunit beta, site-specific
          recombination [Xenorhabdus bovienii SS-2004]
 gi|289173181|emb|CBJ79954.1| integration host factor (IHF), beta subunit, site-specific
          recombination [Xenorhabdus bovienii SS-2004]
          Length = 96

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++++   +  K     V  + + + ++   GE I++  F +F +  +  RV
Sbjct: 1  MTKSELIERLTEQQSHMPAKAVEDAVKEMLDHMAETLAAGERIEVRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R+ 
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91


>gi|218886875|ref|YP_002436196.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris str. 'Miyazaki F']
 gi|218757829|gb|ACL08728.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris str. 'Miyazaki F']
          Length = 91

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV+++++E  L  +D+T  V T F+ + D+ + G+ ++I  F +F +K      G
Sbjct: 1  MNKSELVRALAEEHELPVEDATVVVNTFFDCVRDALLEGDRVEIRGFGSFKIKGYRGYKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   V + P+R+ VF+A   LK  + 
Sbjct: 61 RNPKTGDSVAVPPKRLPVFRAGKELKDILN 90


>gi|300692112|ref|YP_003753107.1| integration host factor subunit beta (IHF-beta) [Ralstonia
          solanacearum PSI07]
 gi|299079172|emb|CBJ51840.1| Integration host factor subunit beta (IHF-beta) [Ralstonia
          solanacearum PSI07]
          Length = 140

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 55/95 (57%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV+ ++  F  L  +D+   V T+ + + D+   G  I+I  F +F + ++  RV
Sbjct: 3  MTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN ++ ++V +  +RV  FKA   L++R+   + 
Sbjct: 63 GRNPKSGEKVLVPEKRVPHFKAGKELRERVDRSLE 97


>gi|169350609|ref|ZP_02867547.1| hypothetical protein CLOSPI_01380 [Clostridium spiroforme DSM 1552]
 gi|169292663|gb|EDS74796.1| hypothetical protein CLOSPI_01380 [Clostridium spiroforme DSM 1552]
          Length = 103

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 54/90 (60%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + + +L++S+SKE  L++KD+   V T+FN I  S + G+ + IS F TF V  + +R G
Sbjct: 14  MNKKELIESVSKERNLTKKDAEILVDTVFNTITRSVIEGDKVLISGFGTFKVNDRKARKG 73

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            + +T +E+ I   + V FK S+ LK  + 
Sbjct: 74  ISPKTQEEMIIPASKTVTFKPSNRLKDAMN 103


>gi|83311280|ref|YP_421544.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1]
 gi|82946121|dbj|BAE50985.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magneticum AMB-1]
          Length = 92

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++    +++ D+   +  +F  I  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKSELIAAVADGANMTKADAASAIDAVFAAITAAMKSGDDVRLVGFGTFSVSARPARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + + I   +   F A   LK  I  
Sbjct: 61 RNPQTGKTLTIAASKSAKFTAGKSLKDTING 91


>gi|148264197|ref|YP_001230903.1| histone family protein DNA-binding protein [Geobacter
          uraniireducens Rf4]
 gi|146397697|gb|ABQ26330.1| histone family protein DNA-binding protein [Geobacter
          uraniireducens Rf4]
          Length = 91

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 53/91 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++++ + GLS K +   +  +F+ + ++ + G+ I+I  F +F VK   +  G
Sbjct: 1  MNKSELIEALATKKGLSYKKAEEIINVIFDSMTNALLDGDRIEIRGFGSFVVKGYQAYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + + +  +++  FK    LK+++  
Sbjct: 61 RNPKTGESIAVKSKKLPFFKVGKELKEKVSG 91


>gi|257455759|ref|ZP_05620985.1| integration host factor subunit alpha [Enhydrobacter aerosaccus
           SK60]
 gi|257446773|gb|EEV21790.1| integration host factor subunit alpha [Enhydrobacter aerosaccus
           SK60]
          Length = 105

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 58/96 (60%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+T+ +++  + +  G++R+DS  FV   F+E+ ++  +G  +K+S F  F +K K  
Sbjct: 7   GKTLTKLEMINHLMENLGMTRQDSRAFVENFFSELSETLTKGHQVKLSGFGNFEIKDKSQ 66

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           R GRN +T + V +  RRVV FKA   +++ I D +
Sbjct: 67  RPGRNPKTGEMVHVTARRVVTFKAGQKMRRSIEDKL 102


>gi|74317692|ref|YP_315432.1| histone-like DNA-binding protein [Thiobacillus denitrificans ATCC
          25259]
 gi|74057187|gb|AAZ97627.1| Histone-like DNA-binding protein [Thiobacillus denitrificans ATCC
          25259]
          Length = 90

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    +S+  + R +    + +  +  +G+ + +  F +F+V ++ +R G
Sbjct: 1  MNKSELIDAIADSADVSKAAAGRALEATVDAVKKALKKGDIVTLVGFGSFYVGKRAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   +V  F+A   LK  + 
Sbjct: 61 RNPRTGASIKIKAAKVPKFRAGKGLKDALN 90


>gi|284050974|ref|ZP_06381184.1| nucleoid protein Hbs [Arthrospira platensis str. Paraca]
 gi|291567416|dbj|BAI89688.1| DNA-binding protein [Arthrospira platensis NIES-39]
          Length = 98

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 46/94 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  LV+  S + G+++K +   ++ +   I D+   GE + +  F +F  + + +R G
Sbjct: 1  MNKEQLVQETSIKAGVTKKQADAIISAICECIMDAVADGEKVTLVGFGSFEARHRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN  T Q + I    V  F A    K+R+ ++  
Sbjct: 61 RNPSTGQPMTIPATTVPAFSAGKAFKERVANESN 94


>gi|157961895|ref|YP_001501929.1| integration host factor subunit beta [Shewanella pealeana ATCC
          700345]
 gi|189045045|sp|A8H4A7|IHFB_SHEPA RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|157846895|gb|ABV87394.1| integration host factor, beta subunit [Shewanella pealeana ATCC
          700345]
          Length = 95

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  LS K+    +  +  ++ D+   G+ I+I  F +F +  +  R 
Sbjct: 1  MTKSELIEKLATRQSQLSAKEVEAAIKEMLEQMADTLETGDRIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V+++ + V  FK    L++R+
Sbjct: 61 GRNPKTGTSVELEGKYVPHFKPGKELRERV 90


>gi|260219735|emb|CBA26580.1| DNA-binding protein HU-beta [Curvibacter putative symbiont of
          Hydra magnipapillata]
          Length = 90

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+K   +S+  +TR + +    +  +  +G  + +  F TF V ++ +R G
Sbjct: 1  MNKTELIEHIAKHADISKAAATRALESTIGAVKTTLKKGGTVSLVGFGTFAVGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   +V  F+    LK  + 
Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALKDALN 90


>gi|229593397|ref|YP_002875516.1| DNA-binding protein HU1 [Pseudomonas fluorescens SBW25]
 gi|312963898|ref|ZP_07778369.1| histone-like DNA-binding protein [Pseudomonas fluorescens WH6]
 gi|229365263|emb|CAY53586.1| DNA-binding protein HU1 [Pseudomonas fluorescens SBW25]
 gi|311281933|gb|EFQ60543.1| histone-like DNA-binding protein [Pseudomonas fluorescens WH6]
          Length = 91

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L  +I+++  L+++ + R +  +  EI  +  R +++ +  F TF  + +G+R G
Sbjct: 1  MRKPELAAAIAEKADLTKEQANRVLNAVLEEITGALHRKDSVTLVGFGTFLQRHRGARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT + VKI     V FK    LK  + 
Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKSLKDTVN 90


>gi|535709|gb|AAA65948.1| HU protein [Pseudomonas aeruginosa]
          Length = 89

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  +   +  +   G+++ +  F TF VK+  +R G
Sbjct: 1  MNKSELIDAIAASADIPKDVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKEPAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI   ++  FKA   LK  + 
Sbjct: 61 RNPQTGKPIKIAA-KIPGFKAGKALKDAVN 89


>gi|300704749|ref|YP_003746352.1| integration host factor subunit beta [Ralstonia solanacearum
          CFBP2957]
 gi|299072413|emb|CBJ43758.1| Integration host factor subunit beta (IHF-beta) [Ralstonia
          solanacearum CFBP2957]
          Length = 140

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 55/95 (57%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV+ ++  F  L  +D+   V T+ + + D+   G  I+I  F +F + ++  RV
Sbjct: 3  MTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN ++ ++V +  +RV  FKA   L++R+   + 
Sbjct: 63 GRNPKSGEKVLVPEKRVPHFKAGKELRERVDRSLE 97


>gi|332520714|ref|ZP_08397176.1| histone family protein DNA-binding protein [Lacinutrix algicola
          5H-3-7-4]
 gi|332044067|gb|EGI80262.1| histone family protein DNA-binding protein [Lacinutrix algicola
          5H-3-7-4]
          Length = 90

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ ++++  G+++  S + +     EI  +  +G+ + +  F ++ V ++ +R G
Sbjct: 1  MNKTDLIDAMAEHAGITKAASKKALECALIEIEGALQKGDRVSLVGFGSWSVSKRAARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI  + VV FKA S L   + 
Sbjct: 61 RNPQTGKTIKIKAKNVVKFKAGSDLANAVN 90


>gi|217076815|ref|YP_002334531.1| DNA-binding protein HU 1 [Thermosipho africanus TCF52B]
 gi|217036668|gb|ACJ75190.1| DNA-binding protein HU 1 [Thermosipho africanus TCF52B]
          Length = 92

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +++ +LV  I+++   L +KD    V  +F  I D+  +GE +++  F TF V++   R 
Sbjct: 1  MSKKELVNMIAEKIPELKKKDIKAVVDAVFESISDALAKGEKVQLIGFGTFEVRKAEERT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          G N +T +++KI  R+V  FK    LK+++  
Sbjct: 61 GVNPRTREKIKIPARKVPKFKPGKELKEKVNK 92


>gi|189423310|ref|YP_001950487.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
 gi|189419569|gb|ACD93967.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
          Length = 91

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 57/91 (62%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I    G+++K+S   V  +F+ +  +   GE +KIS F +F VKQK  R G
Sbjct: 1  MTKADIVEKIHTNTGMTQKESAEMVEAVFSIMKSTLETGETLKISGFGSFVVKQKNDRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + + I+ RR++ FK S++L+  I  
Sbjct: 61 RNPQTGEAITIEARRILTFKPSTVLRDAINK 91


>gi|253996687|ref|YP_003048751.1| histone family protein DNA-binding protein [Methylotenera mobilis
          JLW8]
 gi|253983366|gb|ACT48224.1| histone family protein DNA-binding protein [Methylotenera mobilis
          JLW8]
          Length = 90

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  I+   G+S+  + R +      I  +  +G+ + +  F TF+V ++ +R G
Sbjct: 1  MNKSELIDEIASAAGISKAAAGRALDATTAAITKAIKKGDLVTLIGFGTFYVGKREARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + +KI       F+A   LK  + 
Sbjct: 61 RNPRTGETIKIQAANSPKFRAGKALKDAVN 90


>gi|150003567|ref|YP_001298311.1| DNA-binding protein HU-beta [Bacteroides vulgatus ATCC 8482]
 gi|254881205|ref|ZP_05253915.1| DNA-binding protein HU-beta [Bacteroides sp. 4_3_47FAA]
 gi|294777624|ref|ZP_06743075.1| DNA-binding protein HU [Bacteroides vulgatus PC510]
 gi|319640215|ref|ZP_07994941.1| DNA-binding protein HU-beta [Bacteroides sp. 3_1_40A]
 gi|149931991|gb|ABR38689.1| DNA-binding protein HU-beta [Bacteroides vulgatus ATCC 8482]
 gi|254833998|gb|EET14307.1| DNA-binding protein HU-beta [Bacteroides sp. 4_3_47FAA]
 gi|294448692|gb|EFG17241.1| DNA-binding protein HU [Bacteroides vulgatus PC510]
 gi|317388202|gb|EFV69055.1| DNA-binding protein HU-beta [Bacteroides sp. 3_1_40A]
          Length = 90

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++ E GLS+ D+ + V    + +  +   G+ + +  F TF V ++ +R G
Sbjct: 1  MNKADLISAVAAEAGLSKVDAKKAVEAFVSTVTKALQEGDKVSLIGFGTFSVAERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T   + I  ++V  FK  + L   I 
Sbjct: 61 INPSTKATITIPAKKVTKFKPGAELADAIK 90


>gi|88803467|ref|ZP_01118993.1| DNA-binding protein HU-beta (NS1) (HU-1) [Polaribacter irgensii
          23-P]
 gi|88781033|gb|EAR12212.1| DNA-binding protein HU-beta (NS1) (HU-1) [Polaribacter irgensii
          23-P]
          Length = 90

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+ +++ + G+S+  +   + +    I  S  + E + +  F TF V ++ +R G
Sbjct: 1  MNKSDLIDAMAADAGISKVAAKAALESFTTHITSSLQKKEKVALVGFGTFSVSERAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   ++I  + V  FKA + L   + 
Sbjct: 61 RNPQTGATIQISAKNVAKFKAGAGLSDAVN 90


>gi|295689080|ref|YP_003592773.1| integration host factor subunit alpha [Caulobacter segnis ATCC
          21756]
 gi|295430983|gb|ADG10155.1| integration host factor, alpha subunit [Caulobacter segnis ATCC
          21756]
          Length = 100

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 62/96 (64%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            T+TR+DL +++ +E GL+R+D    V    + + ++  +GE +K+S F  F V+ K +
Sbjct: 3  GSTLTRADLCEAVHEEVGLTRQDCAGLVERTLDLVAEALEKGETVKLSGFGVFQVRSKRA 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          R+GRN +T +  +I+PRRV+ F+AS ++K RI   +
Sbjct: 63 RMGRNPKTGEPAEIEPRRVIGFRASQVMKARIDRAL 98


>gi|162148929|ref|YP_001603390.1| integration host factor subunit beta [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545315|ref|YP_002277544.1| integration host factor subunit beta [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|189045037|sp|A9H0B5|IHFB_GLUDA RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|161787506|emb|CAP57102.1| putative integration host factor beta-subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532992|gb|ACI52929.1| integration host factor, beta subunit [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 98

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 1/97 (1%)

Query: 5   ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+  ++     L  +D    V T+F+EI  +  RG+ +++  F  F VK++ +R 
Sbjct: 1   MTKSELIAELAAANPHLLSRDVELIVQTIFSEISAALARGDRVELRGFGAFTVKKRDART 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T + V +D + V  FKA   L++R+ +     
Sbjct: 61  GRNPRTGEMVAVDEKVVPFFKAGKELRERVNNGAPAE 97


>gi|117924422|ref|YP_865039.1| HU family DNA-binding protein [Magnetococcus sp. MC-1]
 gi|117608178|gb|ABK43633.1| HU family DNA-binding protein [Magnetococcus sp. MC-1]
          Length = 91

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  +++ K+++   GLS+ D+ + +   F  I D+   G  +++  F TF V ++ +R G
Sbjct: 1  MNLTEMKKTVADATGLSQADADKAIKASFAAIQDALAGGATVQLPGFGTFSVGERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT  E++I   + V FKA   LK  + D
Sbjct: 61 RNPQTGAEIQIAASKSVKFKAGKNLKDALND 91


>gi|302670433|ref|YP_003830393.1| DNA-binding protein [Butyrivibrio proteoclasticus B316]
 gi|302394906|gb|ADL33811.1| DNA-binding protein [Butyrivibrio proteoclasticus B316]
          Length = 92

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+KE GLS+KD+   +    + +     +   +++  F TF   ++ +R G
Sbjct: 1  MNKTELIDAIAKEAGLSKKDAAAALNAFTDTVTKELKKKGKVQLVGFGTFETTKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +N QT   +KI       FKA   LK  +  
Sbjct: 61 KNPQTGAAIKIPASVAPKFKAGKALKDLVNK 91


>gi|294676676|ref|YP_003577291.1| integration host factor subunit beta [Rhodobacter capsulatus SB
          1003]
 gi|547714|sp|Q06607|IHFB_RHOCA RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|294661|gb|AAA03551.1| HIP [Rhodobacter capsulatus]
 gi|294475496|gb|ADE84884.1| integration host factor, beta subunit [Rhodobacter capsulatus SB
          1003]
          Length = 95

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L+  I++E   L ++D  + V T+F EI ++  RG+ +++  F  F VK++ +R 
Sbjct: 1  MIRSELIAKIAEENPHLFQRDVEKIVNTIFEEIIEAMARGDRVELRGFGAFSVKKRDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T   V +D + V  FK   +L+ R+     
Sbjct: 61 GRNPRTGTSVAVDEKHVPFFKTGKLLRDRLNGGEE 95


>gi|255021995|ref|ZP_05294002.1| integration host factor, alpha subunit [Acidithiobacillus caldus
          ATCC 51756]
 gi|254968563|gb|EET26118.1| integration host factor, alpha subunit [Acidithiobacillus caldus
          ATCC 51756]
          Length = 101

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 50/88 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ DL   +    G  + ++   V   F+ I ++  RGE +K+S F  F ++ K +R 
Sbjct: 2  TVTKLDLTNHLYDTIGFKKAEAAELVDLFFDTIRETLARGEEVKLSGFGNFTLRDKRARP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
          GRN +T + V+I  RRVV F AS +LK 
Sbjct: 62 GRNPRTRELVEISARRVVTFHASPVLKA 89


>gi|325678265|ref|ZP_08157893.1| DNA-binding protein HU-beta [Ruminococcus albus 8]
 gi|324110028|gb|EGC04216.1| DNA-binding protein HU-beta [Ruminococcus albus 8]
          Length = 92

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+++ G S+K++ + +  + + I D+  +GE + +  F TF V+ + ++V 
Sbjct: 1  MNKAELINVIAEKGGYSKKEADKALAAVLDSITDALEKGEKVTLVGFGTFEVRDRAAKVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N  T   V +  R+V  FKA S LK  +  
Sbjct: 61 MNPVTKAPVDVPARKVPAFKAGSALKAAVDK 91


>gi|94971730|ref|YP_593778.1| histone-like DNA-binding protein [Candidatus Koribacter
          versatilis Ellin345]
 gi|94553780|gb|ABF43704.1| histone-like DNA-binding protein [Candidatus Koribacter
          versatilis Ellin345]
          Length = 93

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  I+   G+S+  ++  +  L + +  S  +GE + +  F TF V Q+ +R G
Sbjct: 1  MNKADLVDKIAAASGISKTSASEAIDALVDGVTTSLKKGERVTLVGFGTFAVSQRRARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN QT   +KI  R+V  F     LKK +   
Sbjct: 61 RNPQTGSVIKIAARKVAKFTPGVELKKAVNKS 92


>gi|226946851|ref|YP_002801924.1| histone-like DNA-binding protein [Azotobacter vinelandii DJ]
 gi|226721778|gb|ACO80949.1| histone-like bacterial DNA-binding protein [Azotobacter
          vinelandii DJ]
          Length = 90

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L  +I+++  L+R  + R +  +  EI  +  R +++ +  F TF  + +G+R G
Sbjct: 1  MRKPELAAAIAEKTDLTRDQANRVLNAMLEEITSALNRKDSVTLVGFGTFVQRHRGARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT Q VKI     V FK    L+  + 
Sbjct: 61 KNPQTGQPVKIRASNTVAFKPGKSLRDAVN 90


>gi|309389063|gb|ADO76943.1| bacterial nucleoid protein Hbs [Halanaerobium praevalens DSM
          2228]
          Length = 99

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 54/97 (55%), Gaps = 8/97 (8%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--------EAIKISSFATFHV 56
          +T+++L+  ++++ G+++KD+   V    + I +             + +++  F TF V
Sbjct: 1  MTKNELIDVVAEKTGVTKKDTGEVVNETIDTIMNYLKSEAKKDEDNRDNVQLIGFGTFEV 60

Query: 57 KQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          K + +R GRN QT +E++I  R+V VF++    K+ +
Sbjct: 61 KDRSARKGRNPQTGEELQIPARKVPVFRSGKSFKETV 97


>gi|149372186|ref|ZP_01891456.1| DNA-binding protein HU-beta (NS1) (HU-1) [unidentified
          eubacterium SCB49]
 gi|149354953|gb|EDM43515.1| DNA-binding protein HU-beta (NS1) (HU-1) [unidentified
          eubacterium SCB49]
          Length = 90

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+ +++++ G+++  + + + +    +  S  +G  + +  F ++ V ++ +R G
Sbjct: 1  MNKSDLIDAMAEDAGVTKAAAKKALESFLGNVEGSLKKGNRVSLVGFGSWSVTKRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI  + VV FKA S L+  + 
Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGSDLQSSVN 90


>gi|239994306|ref|ZP_04714830.1| integration host factor subunit beta [Alteromonas macleodii ATCC
          27126]
          Length = 95

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ +   +  K+    +  L  ++  +  +GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLADQARHIPAKELELAIKELLEQMAQTLQKGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T + VK+D + V  FK    L++R+   + 
Sbjct: 61 GRNPKTGETVKLDGKYVPHFKPGKELRERVDASIA 95


>gi|224542695|ref|ZP_03683234.1| hypothetical protein CATMIT_01880 [Catenibacterium mitsuokai DSM
          15897]
 gi|224524405|gb|EEF93510.1| hypothetical protein CATMIT_01880 [Catenibacterium mitsuokai DSM
          15897]
          Length = 91

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV+ +++   L++ D+ R +  L + +  + V G+ + +    TF V+++ +R G
Sbjct: 1  MKKNELVEKVAEGASLTKADAERAINALVDAVSGALVEGDKVALKGLGTFEVRERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T + ++I   +V  FKASS LK  +  
Sbjct: 61 INPRTRETIEIPASKVPAFKASSTLKDAVNK 91


>gi|296445655|ref|ZP_06887610.1| histone family protein DNA-binding protein [Methylosinus
           trichosporium OB3b]
 gi|296256900|gb|EFH03972.1| histone family protein DNA-binding protein [Methylosinus
           trichosporium OB3b]
          Length = 131

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/95 (44%), Positives = 63/95 (66%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           +S T+TR+DL  ++ +  GLSR +S  FV  + +EI  + V G+ +K+SSF +FH++ K 
Sbjct: 29  LSHTVTRADLADAVHQRIGLSRTESAEFVEMVLSEIFQAIVAGDDVKLSSFGSFHIRWKN 88

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            RVGRN +T     I  RRVV+FKAS++L+ RI  
Sbjct: 89  ERVGRNPKTGAAAPISARRVVMFKASNVLRARING 123


>gi|83749857|ref|ZP_00946825.1| Integration host factor beta-subunit [Ralstonia solanacearum
          UW551]
 gi|207725367|ref|YP_002255763.1| integration host factor beta-subunit (ihf-beta) protein
          [Ralstonia solanacearum MolK2]
 gi|207743934|ref|YP_002260326.1| integration host factor beta-subunit (ihf-beta) protein
          [Ralstonia solanacearum IPO1609]
 gi|83723470|gb|EAP70680.1| Integration host factor beta-subunit [Ralstonia solanacearum
          UW551]
 gi|206590603|emb|CAQ37565.1| integration host factor beta-subunit (ihf-beta) protein
          [Ralstonia solanacearum MolK2]
 gi|206595336|emb|CAQ62263.1| integration host factor beta-subunit (ihf-beta) protein
          [Ralstonia solanacearum IPO1609]
          Length = 140

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 55/95 (57%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV+ ++  F  L  +D+   V T+ + + D+   G  I+I  F +F + ++  RV
Sbjct: 3  MTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN ++ ++V +  +RV  FKA   L++R+   + 
Sbjct: 63 GRNPKSGEKVLVPEKRVPHFKAGKELRERVDRSLE 97


>gi|328951805|ref|YP_004369139.1| histone family protein DNA-binding protein [Desulfobacca
          acetoxidans DSM 11109]
 gi|328452129|gb|AEB07958.1| histone family protein DNA-binding protein [Desulfobacca
          acetoxidans DSM 11109]
          Length = 90

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DL+ +++ +  L++ ++ + +  L   +  S      + I     F V ++  R G
Sbjct: 1  MTKADLISAMAAQANLTKAETEKTLNALITVMTSSLQTDGKLSIPGLGVFSVNERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + ++I   ++V FK    LK+ +
Sbjct: 61 RNPRTGEPMQIAASKMVKFKPGKALKEAV 89


>gi|89901030|ref|YP_523501.1| histone-like protein DNA-binding protein [Rhodoferax ferrireducens
           T118]
 gi|89345767|gb|ABD69970.1| bacterial nucleoid protein Hbs [Rhodoferax ferrireducens T118]
          Length = 112

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 48/90 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L++ I+    +S+  +TR + +    +  +  +G ++ +  F TF V ++ +RVG
Sbjct: 23  VNKTELIEHIALNADISKAAATRALESAIGAVKITLKKGGSVSLVGFGTFAVGKRAARVG 82

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN +T   +KI   +V  F+    LK  + 
Sbjct: 83  RNPRTGDAIKIKAAKVPKFRPGKALKDALN 112


>gi|282899711|ref|ZP_06307675.1| Histone-like protein DNA-binding protein [Cylindrospermopsis
          raciborskii CS-505]
 gi|281195590|gb|EFA70523.1| Histone-like protein DNA-binding protein [Cylindrospermopsis
          raciborskii CS-505]
          Length = 94

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +++++  +++K +   ++   + I ++   G+ + +  F +F  + + +R G
Sbjct: 1  MNKGELVDAVAEKANVTKKQADAVLSAAIDTIVEAVASGDKVTLVGFGSFESRDRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +TN++++I   RV  F A  + ++++ 
Sbjct: 61 RNPKTNEKMEIPATRVPAFSAGKLFREKVA 90


>gi|161525426|ref|YP_001580438.1| integration host factor subunit beta [Burkholderia multivorans ATCC
           17616]
 gi|189349837|ref|YP_001945465.1| integration host factor subunit beta [Burkholderia multivorans ATCC
           17616]
 gi|221201262|ref|ZP_03574302.1| integration host factor, beta subunit [Burkholderia multivorans
           CGD2M]
 gi|221206284|ref|ZP_03579297.1| integration host factor, beta subunit [Burkholderia multivorans
           CGD2]
 gi|221213565|ref|ZP_03586539.1| integration host factor, beta subunit [Burkholderia multivorans
           CGD1]
 gi|226709776|sp|A9ADV3|IHFB_BURM1 RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|160342855|gb|ABX15941.1| integration host factor, beta subunit [Burkholderia multivorans
           ATCC 17616]
 gi|189333859|dbj|BAG42929.1| integration host factor beta subunit [Burkholderia multivorans ATCC
           17616]
 gi|221166354|gb|EED98826.1| integration host factor, beta subunit [Burkholderia multivorans
           CGD1]
 gi|221173593|gb|EEE06027.1| integration host factor, beta subunit [Burkholderia multivorans
           CGD2]
 gi|221179112|gb|EEE11519.1| integration host factor, beta subunit [Burkholderia multivorans
           CGD2M]
          Length = 107

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + D+  +G  I+I  F +F + ++ +RV
Sbjct: 1   MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           GRN ++ ++V++  + V  FK    L++R+ D   G     D+ 
Sbjct: 61  GRNPKSGEKVQVPEKFVPHFKPGKELRERV-DGRAGEPLKADEP 103


>gi|307547003|ref|YP_003899482.1| DNA-binding protein HU-beta [Halomonas elongata DSM 2581]
 gi|307219027|emb|CBV44297.1| K03530 DNA-binding protein HU-beta [Halomonas elongata DSM 2581]
          Length = 91

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L  +I++   LS+  +++ +  + +EI  S   G+ + +  F TF V+++ +R G
Sbjct: 1  MRKPELAAAIAERADLSKDKASQVLNVILDEITGSVSDGKDVSLIGFGTFTVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +N QT + + I   + V FK    LK  +  
Sbjct: 61 KNPQTGEPLTIPASKTVAFKPGKGLKDAVTK 91


>gi|291434889|ref|YP_003518271.1| DNA-binding protein Hu-beta [Cupriavidus metallidurans CH34]
 gi|288259483|gb|ADC45367.1| DNA-binding protein Hu-beta (bacterial histone-like DNA-binding
          protein) [Cupriavidus metallidurans CH34]
          Length = 144

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ ++++   GL++  + + +    + I ++  RGE + +  F TF   ++G R+
Sbjct: 1  MTKSELIDAVARGVDGLTKTKAEQVLNATLDAIVEAVGRGETLSLIGFGTFSKGERGERM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           RN +T +E++++  + V FKA    K  +   
Sbjct: 61 ARNPRTGEEIRVEAAKTVKFKAGQRFKDAVNGG 93


>gi|291279805|ref|YP_003496640.1| integration host factor, subunit beta [Deferribacter
          desulfuricans SSM1]
 gi|290754507|dbj|BAI80884.1| integration host factor, beta subunit [Deferribacter
          desulfuricans SSM1]
          Length = 97

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 59/92 (64%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S L++ I++++  L++K     V  +FN I ++   GE ++I  F +F ++QK ++V
Sbjct: 1  MTKSQLIEIITEKYPKLTKKQIEFIVNGVFNTIKEALKNGEPVEIRGFGSFKIRQKEAKV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V+I  ++V  FK    +K+++++
Sbjct: 61 GRNPKTGETVQIPAKKVPYFKPGKEIKEQLIE 92


>gi|162148845|ref|YP_001603306.1| integration host factor alpha-subunit [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209545407|ref|YP_002277636.1| integration host factor subunit alpha [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|161787422|emb|CAP57017.1| putative integration host factor alpha-subunit [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209533084|gb|ACI53021.1| integration host factor, alpha subunit [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 105

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 1/96 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS T+TR+ L + I  + GLSR +S   +  +   +      G  +KIS F TF V+QKG
Sbjct: 1  MS-TVTRASLAEHIYSQVGLSRNESADLLEHVLERVAKELESGNTVKISGFGTFSVRQKG 59

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R GRN +T  EV I PR V+VF+ S +L+ R+   
Sbjct: 60 RRTGRNPKTGVEVPILPRSVLVFRPSQLLRARVNGG 95


>gi|148826992|ref|YP_001291745.1| integration host factor subunit alpha [Haemophilus influenzae
          PittGG]
 gi|166918507|sp|A5UF06|IHFA_HAEIG RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|148718234|gb|ABQ99361.1| 50S ribosomal protein L35 [Haemophilus influenzae PittGG]
          Length = 96

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 52/92 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+ D+++ +S ++ LS++D+   V     EI  S   G+ +K+S F  F ++ K SR 
Sbjct: 3  TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRLSLEFGQDVKLSGFGNFELRDKSSRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T   V +  RRVV FK    L+ R+  
Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARVEK 94


>gi|114327968|ref|YP_745125.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1]
 gi|114316142|gb|ABI62202.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1]
          Length = 97

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++ E  L R  + + V  +   I  +  R E +++  F +F V  + + VG
Sbjct: 1  MNKMELITAVADELELPRSRAAQAVDAVLGSIESALKRHEEVRLVGFGSFSVASRKASVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T +E+ I P   V FKA   LK  + +
Sbjct: 61 RNPRTGEEIAIPPALSVRFKAGKTLKDALNE 91


>gi|242279062|ref|YP_002991191.1| histone family protein DNA-binding protein [Desulfovibrio
          salexigens DSM 2638]
 gi|242121956|gb|ACS79652.1| histone family protein DNA-binding protein [Desulfovibrio
          salexigens DSM 2638]
          Length = 91

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+KS+++E GL   +S   V    + I ++ VRG+ ++I  F +F +K+     G
Sbjct: 1  MNKSELIKSLAEEKGLHVDESAEIVDAFVDAIKEALVRGDRVEIRGFGSFKMKEYKGYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   V + P+++  F+    LK+ + 
Sbjct: 61 RNPKTGDVVDVTPKKLPFFRPGKELKEYLN 90


>gi|215486037|ref|YP_002328468.1| integration host factor subunit beta [Escherichia coli O127:H6
          str. E2348/69]
 gi|254803532|sp|B7UMZ8|IHFB_ECO27 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|215264109|emb|CAS08453.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli O127:H6 str. E2348/69]
          Length = 94

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLATQQSHIPAKTVEDAVKDMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91


>gi|229825973|ref|ZP_04452042.1| hypothetical protein GCWU000182_01337 [Abiotrophia defectiva ATCC
          49176]
 gi|229789715|gb|EEP25829.1| hypothetical protein GCWU000182_01337 [Abiotrophia defectiva ATCC
          49176]
          Length = 95

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 49/94 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+++  L + D+ + V    + + +   +G  +++  F TF V ++ +R G
Sbjct: 1  MNKAELVSAIAEKTELKKVDAEKAVKAFVDVVTEELKKGGKVQLVGFGTFEVSKRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN QT + +KI       FKA   LK  I    +
Sbjct: 61 RNPQTKKTIKIPASNAAKFKAGKALKDAINTKTK 94


>gi|330503833|ref|YP_004380702.1| integration host factor subunit alpha [Pseudomonas mendocina
          NK-01]
 gi|328918119|gb|AEB58950.1| integration host factor subunit alpha [Pseudomonas mendocina
          NK-01]
          Length = 92

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 47/85 (55%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          + + + +E GL+++++   V   F EI  +    E +K+S F  F ++ K  R GRN +T
Sbjct: 1  MAERLYEELGLNKREAKELVELFFEEIRQALELNEQVKLSGFGNFDLRDKRQRPGRNPKT 60

Query: 70 NQEVKIDPRRVVVFKASSILKKRIM 94
           +E+ I  RRVV F+    LK R+ 
Sbjct: 61 GEEIPITARRVVTFRPGQKLKARVE 85


>gi|161503890|ref|YP_001571002.1| integration host factor subunit beta [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189045041|sp|A9MHX0|IHFB_SALAR RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|160865237|gb|ABX21860.1| hypothetical protein SARI_01980 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
          Length = 94

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91


>gi|148263975|ref|YP_001230681.1| histone family protein DNA-binding protein [Geobacter
          uraniireducens Rf4]
 gi|146397475|gb|ABQ26108.1| bacterial nucleoid protein Hbs [Geobacter uraniireducens Rf4]
          Length = 91

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV ++++  G+++ D+ + V      I D   +G+ + +  F TF   ++ +R G
Sbjct: 1  MTKTDLVNAVAEIAGITKVDAEKSVKAFLEAITDCLTKGDKLTLVGFGTFSTAKRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT +++ I       FKA + LK  + 
Sbjct: 61 QNPQTGKKIDIPASVNPKFKAGNTLKTLVN 90


>gi|149912348|ref|ZP_01900906.1| putative integration host factor, beta subunit [Moritella sp.
          PE36]
 gi|149804574|gb|EDM64647.1| putative integration host factor, beta subunit [Moritella sp.
          PE36]
          Length = 94

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ +      L+ KD    V  + +++ D+   G+ I+I  F +F +  +  R+
Sbjct: 1  MTKSELIERLCTANSQLATKDVELSVKAILDQMVDTLATGDRIEIRGFGSFSLHYREPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN ++ ++V+++ + V  FK    L+ R+   +
Sbjct: 61 GRNPKSGEKVELEGKYVPHFKPGKELRDRVNASL 94


>gi|320355050|ref|YP_004196389.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
 gi|320123552|gb|ADW19098.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
          Length = 95

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 56/92 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++++++   +  +++     T+   + D+  RGE+I+I  F +F VK+  S  G
Sbjct: 1  MNKSELIEALAEAMNIPIREAASITNTIIETMSDALARGESIEIRGFGSFVVKEYESYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T +++K+ P+++  FK    L++++  +
Sbjct: 61 RNPKTGEKIKVKPKKLPFFKVGKDLREQVNKN 92


>gi|32472422|ref|NP_865416.1| DNA-binding protein HU [Rhodopirellula baltica SH 1]
 gi|32443658|emb|CAD73100.1| probable DNA-binding protein HU [Rhodopirellula baltica SH 1]
 gi|327538485|gb|EGF25149.1| DNA-binding protein HU [Rhodopirellula baltica WH47]
          Length = 139

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 56/91 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ ++V+ IS+E GL+++++   V   F+ I ++ VR   I++ +F  F VK + +R  
Sbjct: 1  MTKKEIVRVISEELGLTQQETKEVVQRTFDSIVETLVREGRIELRNFGVFEVKPRAARKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T Q+V +  + VV FK   ++++R+  
Sbjct: 61 RNPKTGQQVDVPEKYVVTFKPGKVMEQRVRQ 91


>gi|291614517|ref|YP_003524674.1| integration host factor, subunit beta [Sideroxydans
          lithotrophicus ES-1]
 gi|291584629|gb|ADE12287.1| integration host factor, beta subunit [Sideroxydans
          lithotrophicus ES-1]
          Length = 95

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDL+  ++     L  KD+   V  + + +  +   G  I+I  F +F +  +  R+
Sbjct: 1  MTRSDLIAKLADRYTQLLGKDAELAVKVILDSMSATLSHGGRIEIRGFGSFALNYRPPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++  +V++  + V  FKA   L++R+
Sbjct: 61 GRNPKSGDKVQVPAKYVPHFKAGKELRERV 90


>gi|94270519|ref|ZP_01291761.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|93450767|gb|EAT01823.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
          Length = 91

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 49/91 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV+ ++ E  +S+  + + V  +F+ + ++  +GE I    F TF  + + ++  
Sbjct: 1  MNKKELVEKLAAEGEISKAAADKLVKGVFDNMAEALAKGEKITFPGFGTFETRDRAAKES 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + V++  R+ V FK    LK ++  
Sbjct: 61 RNPRTGEPVQVPARKAVAFKPGKTLKDQVNK 91


>gi|56475921|ref|YP_157510.1| integration host factor subunit beta [Aromatoleum aromaticum
          EbN1]
 gi|56311964|emb|CAI06609.1| integration host factor beta-subunit [Aromatoleum aromaticum
          EbN1]
          Length = 94

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  ++  F  L  KD+   V  + + + ++  RG+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIARLAARFPQLVAKDADYAVKMVIDAMSEALARGDRIEIRGFGSFALNYRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++  +V +  + V  FKA   L++R+
Sbjct: 61 GRNPKSGDKVLVPEKYVPHFKAGKELRERV 90


>gi|28199336|ref|NP_779650.1| integration host factor subunit beta [Xylella fastidiosa Temecula1]
 gi|71898751|ref|ZP_00680920.1| Integration host factor, beta subunit [Xylella fastidiosa Ann-1]
 gi|182682061|ref|YP_001830221.1| integration host factor subunit beta [Xylella fastidiosa M23]
 gi|32129615|sp|Q87BJ8|IHFB_XYLFT RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|226709821|sp|B2I6X0|IHFB_XYLF2 RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|28057442|gb|AAO29299.1| integration host factor, beta subunit [Xylella fastidiosa
           Temecula1]
 gi|71731516|gb|EAO33578.1| Integration host factor, beta subunit [Xylella fastidiosa Ann-1]
 gi|182632171|gb|ACB92947.1| integration host factor, beta subunit [Xylella fastidiosa M23]
 gi|307578329|gb|ADN62298.1| integration host factor subunit beta [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 104

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 1/101 (0%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L++ ++K    L   D    V +L   +  +   G+ I+I  F +F +  +  R 
Sbjct: 1   MTKSELIEILTKRQAHLKSDDVDLAVKSLLEMMGGALSGGDRIEIRGFGSFSLHYRPPRC 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           GRN +T + V +  + V  FK    L++R+   +   +C  
Sbjct: 61  GRNPKTGESVALPGKYVPHFKPGKELRERVASVVPLGECGD 101


>gi|242239664|ref|YP_002987845.1| integration host factor subunit beta [Dickeya dadantii Ech703]
 gi|242131721|gb|ACS86023.1| integration host factor, beta subunit [Dickeya dadantii Ech703]
          Length = 95

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +  ++  +   G+ I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLAGQQSHIPAKVVEEAVKEMLEQMATTLADGDRIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T ++V ++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGEKVDLEGKYVPHFKPGKELRDRAN 91


>gi|186475512|ref|YP_001856982.1| integration host factor subunit beta [Burkholderia phymatum STM815]
 gi|226709782|sp|B2JF07|IHFB_BURP8 RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|184191971|gb|ACC69936.1| integration host factor, beta subunit [Burkholderia phymatum
           STM815]
          Length = 107

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 2/104 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + D+   G  I+I  F +F + ++ SRV
Sbjct: 1   MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALANGHRIEIRGFGSFGLNRRPSRV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           GRN ++ ++V +  + V  FK    L++R+ D   G     D  
Sbjct: 61  GRNPKSGEKVLVPEKHVPHFKPGKELRERV-DRNAGEPLKADAA 103


>gi|330994450|ref|ZP_08318375.1| Integration host factor subunit beta [Gluconacetobacter sp. SXCC-1]
 gi|329758450|gb|EGG74969.1| Integration host factor subunit beta [Gluconacetobacter sp. SXCC-1]
          Length = 105

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 1/101 (0%)

Query: 2   SKTITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
              +TRS+L+  ++     L  ++  R V  +F E+ ++ +RG+ +++  F  F VK++ 
Sbjct: 5   GNRMTRSELIAELAAARPHLPVREVERIVQVIFAEVSNALMRGDRVELRGFGAFTVKKRD 64

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           +R GRN +T + V +D + V  FKA   L++R+      ++
Sbjct: 65  ARTGRNPRTGETVSVDEKVVPFFKAGKELRERVNRAHGTKE 105


>gi|239617732|ref|YP_002941054.1| histone family protein DNA-binding protein [Kosmotoga olearia TBF
          19.5.1]
 gi|239506563|gb|ACR80050.1| histone family protein DNA-binding protein [Kosmotoga olearia TBF
          19.5.1]
          Length = 90

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +I++   +++KD+ + +  + + I +    GE +++  F TF V ++  R G
Sbjct: 1  MNKKELVAAIAERTHMTKKDAGKILDAIIDIIEEKLAGGEVVRLVGFGTFSVVKRKPRKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N +T + +KI   +V  F     LK ++ 
Sbjct: 61 VNPRTKEPIKIPGGKVPKFIPGKELKDKVK 90


>gi|116515025|ref|YP_802654.1| hypothetical protein BCc_084 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285579|sp|Q057Y8|IHFA_BUCCC RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|116256879|gb|ABJ90561.1| integration host factor alpha-subunit [Buchnera aphidicola str. Cc
           (Cinara cedri)]
          Length = 104

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 53/100 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++++   +  +  LS+++    V   F E+  S   GE++K+S F  F+++ K  R G
Sbjct: 3   LTKAEISDYLFHKLELSKQNIKDLVEIFFEEVRKSLELGESVKLSGFGNFYLRDKKQRPG 62

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           RN +T + + I  RRVVVFK    L+ R+      +K   
Sbjct: 63  RNPKTGEYIPISARRVVVFKPGQKLRSRVESFKDIKKEKD 102


>gi|303327383|ref|ZP_07357824.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3]
 gi|302862323|gb|EFL85256.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3]
          Length = 90

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV+ I+ +  L++  + R +      + DS  +   + ++ F TF V+ + +R G
Sbjct: 1  MTKADLVEKIAAKANLTKAAAERALNAFLASVEDSLSKEAKLTLTGFGTFAVESRKARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   + I   ++V F+   +LK  + 
Sbjct: 61 RNPRTGATLTIPACKMVKFRPGKMLKDALN 90


>gi|187927876|ref|YP_001898363.1| integration host factor subunit beta [Ralstonia pickettii 12J]
 gi|187724766|gb|ACD25931.1| integration host factor, beta subunit [Ralstonia pickettii 12J]
          Length = 142

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 55/95 (57%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV+ ++  F  L  +D+   V T+ + + D+   G  I+I  F +F + ++  RV
Sbjct: 3  MTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN ++ ++V +  +RV  FKA   L++R+   + 
Sbjct: 63 GRNPKSGEKVLVPEKRVPHFKAGKELRERVDRSLE 97


>gi|218245818|ref|YP_002371189.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
          8801]
 gi|257058864|ref|YP_003136752.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
          8802]
 gi|218166296|gb|ACK65033.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
          8801]
 gi|256589030|gb|ACU99916.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
          8802]
          Length = 98

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLV  I+ +  +++KD+++ +  L   I ++   GE + +  F TF  + +  R G
Sbjct: 1  MNKEDLVNMIAAKTRITKKDTSQILDALTETIMETVASGEKVVLVGFGTFEPRDRKERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N QT Q + I    V  F A  + K+++++
Sbjct: 61 MNPQTGQPITIPATTVPAFSAGKVFKEQVVN 91


>gi|146311088|ref|YP_001176162.1| integration host factor subunit beta [Enterobacter sp. 638]
 gi|166918547|sp|A4W8T1|IHFB_ENT38 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|145317964|gb|ABP60111.1| integration host factor, beta subunit [Enterobacter sp. 638]
          Length = 95

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V ++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVDLEGKYVPHFKPGKELRDRAN 91


>gi|78048051|ref|YP_364226.1| integration host factor subunit beta [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|78036481|emb|CAJ24172.1| Integration host factor beta subunit [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
          Length = 113

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ +++    L   D    V +L   +  +   G+ I+I  F +F +  +  R+
Sbjct: 11 MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 70

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T + V +  + V  FK    L++R
Sbjct: 71 GRNPKTGESVALPGKHVPHFKPGKELRER 99


>gi|237808313|ref|YP_002892753.1| integration host factor, beta subunit [Tolumonas auensis DSM
          9187]
 gi|259492039|sp|C4LF00|IHFB_TOLAT RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|237500574|gb|ACQ93167.1| integration host factor, beta subunit [Tolumonas auensis DSM
          9187]
          Length = 93

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+SDL++ +S  +  L+ KD    V  +   +  +   G  I+I  F +F +  +  RV
Sbjct: 1  MTKSDLIERLSSSQQHLAAKDVEAAVREILECMAATLESGNRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T ++V++  + V  FK    L++R+ 
Sbjct: 61 GRNPKTGEKVELLAKSVPHFKPGKELRERVN 91


>gi|152979083|ref|YP_001344712.1| integration host factor, alpha subunit [Actinobacillus
          succinogenes 130Z]
 gi|171704314|sp|A6VP80|IHFA_ACTSZ RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|150840806|gb|ABR74777.1| integration host factor, alpha subunit [Actinobacillus
          succinogenes 130Z]
          Length = 98

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 54/95 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ ++ ++++++  L++ ++   V + F EI  +   G  +K+S F  F ++ K SR 
Sbjct: 2  TLTKVEIAENLTRKLELNKTEAKAMVESFFEEIRATLADGHNVKLSGFGNFELRDKASRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T + + +  RRVVVF+    L+ R+     
Sbjct: 62 GRNPKTGENIPVSARRVVVFRPGQKLRARVEKSKP 96


>gi|114330422|ref|YP_746644.1| integration host factor, beta subunit [Nitrosomonas eutropha C91]
 gi|122314557|sp|Q0AIZ2|IHFB_NITEC RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|114307436|gb|ABI58679.1| integration host factor, beta subunit [Nitrosomonas eutropha C91]
          Length = 105

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 1/105 (0%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+  +++ F  L  KD+   V  + + +  S  RGE I+I  F +F +  + SRV
Sbjct: 1   MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLARGERIEIRGFGSFDLNYRPSRV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT 108
           GRN ++ ++V +  + V  FKA   +++ I    +          
Sbjct: 61  GRNPKSGEKVHVPEKYVPHFKAGKKMRELIDSSHKQHNLLDQATG 105


>gi|285018379|ref|YP_003376090.1| integration host factor beta-subunit (ihf-beta) protein
          [Xanthomonas albilineans GPE PC73]
 gi|283473597|emb|CBA16100.1| integration host factor beta-subunit (ihf-beta) protein
          [Xanthomonas albilineans]
          Length = 101

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++++   L   D    V +L   +  +   GE I+I  F +F +  +  R+
Sbjct: 1  MTKSELIEILARKQVHLKSDDVDLAVKSLLEMMGGALSGGERIEIRGFGSFSLHYRPPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  + V  FK    L++R+
Sbjct: 61 GRNPKTGESVALPGKHVPHFKPGKELRERV 90


>gi|197116588|ref|YP_002137015.1| histone-like protein [Geobacter bemidjiensis Bem]
 gi|253698824|ref|YP_003020013.1| histone family protein DNA-binding protein [Geobacter sp. M21]
 gi|197085948|gb|ACH37219.1| histone-like protein [Geobacter bemidjiensis Bem]
 gi|251773674|gb|ACT16255.1| histone family protein DNA-binding protein [Geobacter sp. M21]
          Length = 94

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 50/94 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV++++K   + +  + + V    + +  +  +G+ + +  F +F V  + +R G
Sbjct: 1  MTKAELVEAVAKSANIPKGAAEKAVGAFISSVSGALKKGDRVTLVGFGSFEVASRQARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN QT +E+KI   +V  F+    LK  I    +
Sbjct: 61 RNPQTGKEIKIAEAKVPKFRPGKALKDAIAAKKK 94


>gi|260597310|ref|YP_003209881.1| integration host factor subunit beta [Cronobacter turicensis
          z3032]
 gi|260216487|emb|CBA29645.1| Integration host factor subunit beta [Cronobacter turicensis
          z3032]
          Length = 94

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ +   +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLASQHSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91


>gi|222055876|ref|YP_002538238.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32]
 gi|221565165|gb|ACM21137.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32]
          Length = 91

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 54/91 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++++ + GLS K +   + ++F  + ++ + G+ I+I  F +F VK   S +G
Sbjct: 1  MNKSELIEALAAKKGLSYKKAEEIINSIFESMTNALLTGDRIEIRGFGSFVVKSYQSYMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + + +  +++  FK    LK+++  
Sbjct: 61 RNPKTGESIAVKSKKLPFFKVGKELKEKVSG 91


>gi|16759852|ref|NP_455469.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. CT18]
 gi|16764342|ref|NP_459957.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhimurium str. LT2]
 gi|29142375|ref|NP_805717.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. Ty2]
 gi|56413968|ref|YP_151043.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. ATCC 9150]
 gi|62179506|ref|YP_215923.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. SC-B67]
 gi|157146401|ref|YP_001453720.1| integration host factor subunit beta [Citrobacter koseri ATCC
          BAA-895]
 gi|161614782|ref|YP_001588747.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|167553021|ref|ZP_02346771.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|167994928|ref|ZP_02576018.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168233395|ref|ZP_02658453.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|168237083|ref|ZP_02662141.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. SL480]
 gi|168243747|ref|ZP_02668679.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|168263526|ref|ZP_02685499.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|168466573|ref|ZP_02700435.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|168822093|ref|ZP_02834093.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|194442716|ref|YP_002040180.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194450144|ref|YP_002044974.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|194470393|ref|ZP_03076377.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|194734686|ref|YP_002114033.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. CVM19633]
 gi|197248861|ref|YP_002145900.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|197263951|ref|ZP_03164025.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|197362891|ref|YP_002142528.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. AKU_12601]
 gi|198243808|ref|YP_002214906.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|200390103|ref|ZP_03216714.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|204929822|ref|ZP_03220843.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|205352189|ref|YP_002225990.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Gallinarum str. 287/91]
 gi|207856373|ref|YP_002243024.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Enteritidis str. P125109]
 gi|213023562|ref|ZP_03338009.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
 gi|213161606|ref|ZP_03347316.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. E00-7866]
 gi|213416827|ref|ZP_03349971.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. E01-6750]
 gi|213424599|ref|ZP_03357382.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. E02-1180]
 gi|213579894|ref|ZP_03361720.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-0664]
 gi|213649374|ref|ZP_03379427.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. J185]
 gi|213852006|ref|ZP_03381538.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. M223]
 gi|224582791|ref|YP_002636589.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Paratyphi C strain RKS4594]
 gi|238913245|ref|ZP_04657082.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Tennessee str. CDC07-0191]
 gi|283784738|ref|YP_003364603.1| integration host factor beta-subunit (IHF-beta) [Citrobacter
          rodentium ICC168]
 gi|289825855|ref|ZP_06545023.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-3139]
 gi|54037414|sp|P64395|IHFB_SALTI RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|54041369|sp|P64394|IHFB_SALTY RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|75505813|sp|Q57R19|IHFB_SALCH RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|81677856|sp|Q5PGG9|IHFB_SALPA RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|166918543|sp|A8AIH1|IHFB_CITK8 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|189045042|sp|A9N7V2|IHFB_SALPB RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709805|sp|B5F165|IHFB_SALA4 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709806|sp|B5FQ55|IHFB_SALDC RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709807|sp|B5QZB6|IHFB_SALEP RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709808|sp|B5R8J9|IHFB_SALG2 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709809|sp|B4TD42|IHFB_SALHS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709810|sp|B4T146|IHFB_SALNS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709811|sp|B5BBP5|IHFB_SALPK RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709812|sp|B4TRU3|IHFB_SALSV RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|254803539|sp|C0PXU8|IHFB_SALPC RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|25294355|pir||AD0614 integration host factor beta-chain (IHF-beta) [imported] -
          Salmonella enterica subsp. enterica serovar Typhi
          (strain CT18)
 gi|16419494|gb|AAL19916.1| integration host factor (IHF), beta subunit [Salmonella enterica
          subsp. enterica serovar Typhimurium str. LT2]
 gi|16502145|emb|CAD05382.1| integration host factor beta-subunit (IHF-beta) [Salmonella
          enterica subsp. enterica serovar Typhi]
 gi|29138005|gb|AAO69566.1| integration host factor beta-subunit [Salmonella enterica subsp.
          enterica serovar Typhi str. Ty2]
 gi|56128225|gb|AAV77731.1| integration host factor beta-subunit (IHF-beta) [Salmonella
          enterica subsp. enterica serovar Paratyphi A str. ATCC
          9150]
 gi|62127139|gb|AAX64842.1| integration host factor (IHF), beta subunit; site-specific
          recombination [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|157083606|gb|ABV13284.1| hypothetical protein CKO_02160 [Citrobacter koseri ATCC BAA-895]
 gi|161364146|gb|ABX67914.1| hypothetical protein SPAB_02534 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|194401379|gb|ACF61601.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194408448|gb|ACF68667.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|194456757|gb|EDX45596.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|194710188|gb|ACF89409.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. CVM19633]
 gi|195630987|gb|EDX49573.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|197094368|emb|CAR59881.1| integration host factor beta-subunit (IHF-beta) [Salmonella
          enterica subsp. enterica serovar Paratyphi A str.
          AKU_12601]
 gi|197212564|gb|ACH49961.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|197242206|gb|EDY24826.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|197289888|gb|EDY29249.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. SL480]
 gi|197938324|gb|ACH75657.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|199602548|gb|EDZ01094.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|204320816|gb|EDZ06017.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|205271970|emb|CAR36814.1| integration host factor beta-subunit (IHF-beta) [Salmonella
          enterica subsp. enterica serovar Gallinarum str.
          287/91]
 gi|205322456|gb|EDZ10295.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|205327271|gb|EDZ14035.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205332451|gb|EDZ19215.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|205337151|gb|EDZ23915.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|205341519|gb|EDZ28283.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|205347707|gb|EDZ34338.1| integration host factor, beta subunit [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|206708176|emb|CAR32469.1| integration host factor beta-subunit (IHF-beta) [Salmonella
          enterica subsp. enterica serovar Enteritidis str.
          P125109]
 gi|224467318|gb|ACN45148.1| integration host factor beta subunit [Salmonella enterica subsp.
          enterica serovar Paratyphi C strain RKS4594]
 gi|261246198|emb|CBG24002.1| integration host factor beta-subunit (IHF-beta) [Salmonella
          enterica subsp. enterica serovar Typhimurium str.
          D23580]
 gi|267992720|gb|ACY87605.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhimurium str. 14028S]
 gi|282948192|emb|CBG87759.1| integration host factor beta-subunit (IHF-beta) [Citrobacter
          rodentium ICC168]
 gi|301157525|emb|CBW17015.1| integration host factor beta-subunit (IHF-beta) [Salmonella
          enterica subsp. enterica serovar Typhimurium str.
          SL1344]
 gi|312911968|dbj|BAJ35942.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhimurium str. T000240]
 gi|320085221|emb|CBY95007.1| Integration host factor subunit beta IHF-beta [Salmonella
          enterica subsp. enterica serovar Weltevreden str.
          2007-60-3289-1]
 gi|321223305|gb|EFX48374.1| Integration host factor beta subunit [Salmonella enterica subsp.
          enterica serovar Typhimurium str. TN061786]
 gi|322616412|gb|EFY13321.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315996572]
 gi|322619662|gb|EFY16537.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-1]
 gi|322622642|gb|EFY19487.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-3]
 gi|322629791|gb|EFY26566.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-4]
 gi|322632487|gb|EFY29233.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-1]
 gi|322637018|gb|EFY33721.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-2]
 gi|322641442|gb|EFY38080.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 531954]
 gi|322646092|gb|EFY42608.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649606|gb|EFY46037.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. OH_2009072675]
 gi|322654092|gb|EFY50415.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658624|gb|EFY54886.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 19N]
 gi|322663481|gb|EFY59683.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 81038-01]
 gi|322670217|gb|EFY66357.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671453|gb|EFY67575.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 414877]
 gi|322676809|gb|EFY72876.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 366867]
 gi|322682734|gb|EFY78753.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 413180]
 gi|322686413|gb|EFY82395.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 446600]
 gi|322713975|gb|EFZ05546.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. A50]
 gi|323129247|gb|ADX16677.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhimurium str. 4/74]
 gi|323195936|gb|EFZ81103.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609458-1]
 gi|323199776|gb|EFZ84865.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556150-1]
 gi|323202769|gb|EFZ87805.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609460]
 gi|323209040|gb|EFZ93977.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 507440-20]
 gi|323211516|gb|EFZ96355.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556152]
 gi|323217999|gb|EGA02714.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB101509-0077]
 gi|323219928|gb|EGA04404.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB102109-0047]
 gi|323226704|gb|EGA10900.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB110209-0055]
 gi|323229801|gb|EGA13924.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB111609-0052]
 gi|323233026|gb|EGA17122.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009083312]
 gi|323240761|gb|EGA24803.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009085258]
 gi|323243077|gb|EGA27098.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315731156]
 gi|323249760|gb|EGA33662.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2009159199]
 gi|323252767|gb|EGA36605.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008282]
 gi|323254795|gb|EGA38596.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008283]
 gi|323260004|gb|EGA43632.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008284]
 gi|323267995|gb|EGA51474.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008285]
 gi|323269842|gb|EGA53291.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008287]
 gi|326622659|gb|EGE29004.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Dublin str. 3246]
 gi|326627233|gb|EGE33576.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Gallinarum str. 9]
 gi|332987873|gb|AEF06856.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhimurium str. UK-1]
          Length = 94

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91


>gi|325925940|ref|ZP_08187308.1| integration host factor, beta subunit [Xanthomonas perforans
          91-118]
 gi|325543663|gb|EGD15078.1| integration host factor, beta subunit [Xanthomonas perforans
          91-118]
          Length = 103

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ +++    L   D    V +L   +  +   G+ I+I  F +F +  +  R+
Sbjct: 1  MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T + V +  + V  FK    L++R
Sbjct: 61 GRNPKTGESVALPGKHVPHFKPGKELRER 89


>gi|56550597|ref|YP_161663.1| DNA-binding protein HU-beta [Cupriavidus metallidurans CH34]
 gi|56410303|emb|CAI30185.1| hypothetical DNA-binding protein HU-beta NS1 [Cupriavidus
           metallidurans CH34]
          Length = 158

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 5   ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+ ++++   GL++  + + +    + I ++  RGE + +  F TF   ++G R+
Sbjct: 15  MTKSELIDAVARGVDGLTKTKAEQVLNATLDAIVEAVGRGETLSLIGFGTFSKGERGERM 74

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
            RN +T +E++++  + V FKA    K  +   
Sbjct: 75  ARNPRTGEEIRVEAAKTVKFKAGQRFKDAVNGG 107


>gi|134290950|ref|YP_001114719.1| histone family protein DNA-binding protein [Burkholderia
          vietnamiensis G4]
 gi|134134139|gb|ABO58464.1| histone family protein DNA-binding protein [Burkholderia
          vietnamiensis G4]
          Length = 92

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 47/92 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++   G+S+ D+++ V  + + I D+  R EA+++  F  F   Q+ +R G
Sbjct: 1  MNKQELIDAVAAGAGVSKSDASKTVQAVLDAITDAVSRDEAVQLIGFGAFSRGQRSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN  T +E+ I     V F A    K  +   
Sbjct: 61 RNPTTGEEIAIAAANTVKFAAGKAFKDAVNGS 92


>gi|297624967|ref|YP_003706401.1| histone family protein DNA-binding protein [Truepera radiovictrix
          DSM 17093]
 gi|297166147|gb|ADI15858.1| histone family protein DNA-binding protein [Truepera radiovictrix
          DSM 17093]
          Length = 99

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 54/93 (58%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +KT++++DLV  ++++ G+ +KD    V T+ +++      G+ ++++ F TF V+++ +
Sbjct: 4  AKTVSKADLVDKVAEDTGMRKKDVKTIVDTMIDQVSQHLNNGDKVQLTGFGTFEVRERRA 63

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          R G    T + ++I   +   FK    LK++I 
Sbjct: 64 RTGVKPGTTERIEIPASKYPAFKPGKALKEKIE 96


>gi|152969496|ref|YP_001334605.1| integration host factor subunit beta [Klebsiella pneumoniae
          subsp. pneumoniae MGH 78578]
 gi|238893968|ref|YP_002918702.1| integration host factor subunit beta [Klebsiella pneumoniae
          NTUH-K2044]
 gi|262040989|ref|ZP_06014211.1| integration host factor subunit beta [Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884]
 gi|330014029|ref|ZP_08307845.1| integration host factor, beta subunit [Klebsiella sp. MS 92-3]
 gi|166918553|sp|A6T704|IHFB_KLEP7 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|150954345|gb|ABR76375.1| integration host factor beta subunit [Klebsiella pneumoniae
          subsp. pneumoniae MGH 78578]
 gi|238546284|dbj|BAH62635.1| integration host factor beta subunit [Klebsiella pneumoniae
          subsp. pneumoniae NTUH-K2044]
 gi|259041683|gb|EEW42732.1| integration host factor subunit beta [Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884]
 gi|328533286|gb|EGF60038.1| integration host factor, beta subunit [Klebsiella sp. MS 92-3]
          Length = 95

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91


>gi|53717643|ref|YP_106629.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei K96243]
 gi|53723975|ref|YP_104420.1| DNA-binding protein HU, form B [Burkholderia mallei ATCC 23344]
 gi|67643053|ref|ZP_00441802.1| DNA-binding protein HU-beta [Burkholderia mallei GB8 horse 4]
 gi|121599876|ref|YP_994676.1| DNA-binding protein HU, form B [Burkholderia mallei SAVP1]
 gi|124384371|ref|YP_001027609.1| DNA-binding protein HU, form B [Burkholderia mallei NCTC 10229]
 gi|126442121|ref|YP_001057059.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 668]
 gi|126450406|ref|YP_001082492.1| DNA-binding protein HU-alpha [Burkholderia mallei NCTC 10247]
 gi|126453925|ref|YP_001064289.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1106a]
 gi|134281504|ref|ZP_01768212.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 305]
 gi|167001301|ref|ZP_02267100.1| DNA-binding protein HU-alpha [Burkholderia mallei PRL-20]
 gi|167582881|ref|ZP_02375755.1| DNA-binding protein HU-alpha [Burkholderia thailandensis TXDOH]
 gi|167621021|ref|ZP_02389652.1| DNA-binding protein HU-alpha [Burkholderia thailandensis Bt4]
 gi|167717366|ref|ZP_02400602.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei DM98]
 gi|167736410|ref|ZP_02409184.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 14]
 gi|167813485|ref|ZP_02445165.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 91]
 gi|167822026|ref|ZP_02453497.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 9]
 gi|167834839|ref|ZP_02461722.1| DNA-binding protein HU-alpha [Burkholderia thailandensis MSMB43]
 gi|167843639|ref|ZP_02469147.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei B7210]
 gi|167892111|ref|ZP_02479513.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 7894]
 gi|167900623|ref|ZP_02487828.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei NCTC
          13177]
 gi|167908846|ref|ZP_02495937.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 112]
 gi|167921116|ref|ZP_02508207.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei BCC215]
 gi|217424016|ref|ZP_03455516.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 576]
 gi|226193072|ref|ZP_03788682.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei Pakistan
          9]
 gi|237814395|ref|YP_002898846.1| DNA-binding protein HU-beta [Burkholderia pseudomallei MSHR346]
 gi|242314515|ref|ZP_04813531.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1106b]
 gi|254174725|ref|ZP_04881386.1| DNA-binding protein HU-alpha [Burkholderia mallei ATCC 10399]
 gi|254184070|ref|ZP_04890661.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1655]
 gi|254186534|ref|ZP_04893051.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei Pasteur
          52237]
 gi|254194585|ref|ZP_04901016.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei S13]
 gi|254201495|ref|ZP_04907859.1| DNA-binding protein HU-alpha [Burkholderia mallei FMH]
 gi|254206834|ref|ZP_04913185.1| DNA-binding protein HU-alpha [Burkholderia mallei JHU]
 gi|254260815|ref|ZP_04951869.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1710a]
 gi|254298660|ref|ZP_04966111.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 406e]
 gi|254357388|ref|ZP_04973662.1| DNA-binding protein HU-alpha [Burkholderia mallei 2002721280]
 gi|14194657|sp|Q9ZF89|DBHA_BURPS RecName: Full=DNA-binding protein HU-alpha
 gi|4139233|gb|AAD05170.1| DbhB [Burkholderia pseudomallei 1026b]
 gi|52208057|emb|CAH33987.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei K96243]
 gi|52427398|gb|AAU47991.1| DNA-binding protein HU, form B [Burkholderia mallei ATCC 23344]
 gi|121228686|gb|ABM51204.1| DNA-binding protein HU, form B [Burkholderia mallei SAVP1]
 gi|124292391|gb|ABN01660.1| DNA-binding protein HU, form B [Burkholderia mallei NCTC 10229]
 gi|126221614|gb|ABN85120.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 668]
 gi|126227567|gb|ABN91107.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1106a]
 gi|126243276|gb|ABO06369.1| DNA-binding protein HU-alpha [Burkholderia mallei NCTC 10247]
 gi|134247171|gb|EBA47257.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 305]
 gi|147747389|gb|EDK54465.1| DNA-binding protein HU-alpha [Burkholderia mallei FMH]
 gi|147752376|gb|EDK59442.1| DNA-binding protein HU-alpha [Burkholderia mallei JHU]
 gi|148026452|gb|EDK84537.1| DNA-binding protein HU-alpha [Burkholderia mallei 2002721280]
 gi|157808487|gb|EDO85657.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 406e]
 gi|157934219|gb|EDO89889.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei Pasteur
          52237]
 gi|160695770|gb|EDP85740.1| DNA-binding protein HU-alpha [Burkholderia mallei ATCC 10399]
 gi|169651335|gb|EDS84028.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei S13]
 gi|184214602|gb|EDU11645.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1655]
 gi|217393079|gb|EEC33101.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 576]
 gi|225934672|gb|EEH30649.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei Pakistan
          9]
 gi|237505255|gb|ACQ97573.1| DNA-binding protein HU-beta [Burkholderia pseudomallei MSHR346]
 gi|238524297|gb|EEP87730.1| DNA-binding protein HU-beta [Burkholderia mallei GB8 horse 4]
 gi|242137754|gb|EES24156.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1106b]
 gi|243062917|gb|EES45103.1| DNA-binding protein HU-alpha [Burkholderia mallei PRL-20]
 gi|254219504|gb|EET08888.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1710a]
          Length = 92

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++ + G S+  +   + TL   I  +  +G+++++  F +F   ++ +R G
Sbjct: 1  MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDSVQLIGFGSFGSGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + +KI   + V F A    K  +  
Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFKDAVNK 91


>gi|119774872|ref|YP_927612.1| integration host factor subunit beta [Shewanella amazonensis
          SB2B]
 gi|166975887|sp|A1S6D6|IHFB_SHEAM RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|119767372|gb|ABL99942.1| integration host factor, beta subunit [Shewanella amazonensis
          SB2B]
          Length = 95

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  LS K+    V  +  ++  +   GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIEKLATRQSQLSAKEVESAVKEMLEQMATTLESGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V+++ + V  FK    L++R+
Sbjct: 61 GRNPKTGTSVELEGKYVPHFKPGKELRERV 90


>gi|113866825|ref|YP_725314.1| integration host factor subunit beta [Ralstonia eutropha H16]
 gi|113525601|emb|CAJ91946.1| integration host factor beta subunit [Ralstonia eutropha H16]
          Length = 140

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 1/101 (0%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV+ ++  F  L  +D+   V T+ + + ++   G  I+I  F +F + ++  RV
Sbjct: 1   MTKSELVEKLAARFPQLLLRDADISVKTILDAMSEALADGHRIEIRGFGSFGLNKRPPRV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           GRN ++ + V +  +RV  FKA   L++R+           
Sbjct: 61  GRNPKSGERVLVPEKRVPHFKAGKELRERVDRSQPAPPGAN 101


>gi|117924551|ref|YP_865168.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
 gi|117926183|ref|YP_866800.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
 gi|117608307|gb|ABK43762.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
 gi|117609939|gb|ABK45394.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
          Length = 91

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  ++L K+++++  +S+ D+ + +   F  I D+   GE +++  F TF + ++ +R G
Sbjct: 1  MKMAELKKAVAEKAEMSQSDANQVIKACFEAISDALGNGETVQLPGFGTFSLGERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT  E++I   + V FKA   LK  +  
Sbjct: 61 RNPQTGAEIQIAASKSVKFKAGKALKDSLNG 91


>gi|296116409|ref|ZP_06835023.1| integration host factor subunit beta [Gluconacetobacter hansenii
          ATCC 23769]
 gi|295977002|gb|EFG83766.1| integration host factor subunit beta [Gluconacetobacter hansenii
          ATCC 23769]
          Length = 98

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  ++     L  +D  + V T+F+EI  +  RG+ +++  F  F VK++ SR 
Sbjct: 1  MTKSELIAELAAANPHLPARDIEQIVQTIFHEISAALARGDRVELRGFGAFTVKKRDSRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T + V ++ + V  FKA   L++R+ 
Sbjct: 61 GRNPRTGEIVAVEEKVVPFFKAGKELRERVN 91


>gi|118578624|ref|YP_899874.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
 gi|118501334|gb|ABK97816.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
          Length = 91

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 59/91 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I    G+++K+S   + T+F+ +  +   GE +KIS F +F VKQK +R G
Sbjct: 1  MTKADIVERIHAGTGMTQKESAEMMETVFSIMKSTLETGETLKISGFGSFVVKQKNARRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + + I+ RRV+ FK S++L+  I  
Sbjct: 61 RNPQTGETITIEARRVLSFKPSTVLRDVINK 91


>gi|294084820|ref|YP_003551580.1| integration host factor subunit beta [Candidatus Puniceispirillum
          marinum IMCC1322]
 gi|292664395|gb|ADE39496.1| integration host factor, beta subunit [Candidatus
          Puniceispirillum marinum IMCC1322]
          Length = 92

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRS+L+  ++ +   L  +D  R V T+ +EI  +  RG+ +++  F  F V+ + +R+
Sbjct: 1  MTRSELIARMAAKNPALYHRDIERLVGTILDEISGALERGDRVELRGFGAFSVRHRKARI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T   V++  ++V  FK    +++R+ 
Sbjct: 61 GRNPRTGTSVQVAEKKVPFFKMGKGMRERLN 91


>gi|198283154|ref|YP_002219475.1| integration host factor subunit beta [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667528|ref|YP_002425383.1| integration host factor, beta subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247675|gb|ACH83268.1| integration host factor, beta subunit [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218519741|gb|ACK80327.1| integration host factor, beta subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 101

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 3/101 (2%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+K+IS +   LS +D       + + + D+   GE I+I  F +F +  + ++ 
Sbjct: 1   MTKSELIKNISAQYPHLSVRDIEMATRQMLDYLSDALAEGERIEIRGFGSFSMHVRPAKQ 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIM--DDMRGRKC 102
           GRN +T + V +  +RV  FK    L++++   + + G K 
Sbjct: 61  GRNPKTGEPVLVPEKRVPHFKPGKELREQVDYPEAVAGGKA 101


>gi|254252926|ref|ZP_04946244.1| Integration host factor [Burkholderia dolosa AUO158]
 gi|124895535|gb|EAY69415.1| Integration host factor [Burkholderia dolosa AUO158]
          Length = 107

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + D+  +G  I+I  F +F + ++ +RV
Sbjct: 1   MTKSELVAQLALRFPQLVLKDADFAVKTMLDAMSDALAKGHRIEIRGFGSFGLNRRPARV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           GRN ++ ++V++  + V  FK    L++R+ D   G     D+ 
Sbjct: 61  GRNPKSGEKVQVPEKFVPHFKPGKELRERV-DGRAGEPLKADEP 103


>gi|270160386|ref|ZP_06189035.1| DNA-binding protein HU-beta [Legionella longbeachae D-4968]
 gi|308051556|ref|YP_003915130.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Legionella longbeachae NSW150]
 gi|269987096|gb|EEZ93358.1| DNA-binding protein HU-beta [Legionella longbeachae D-4968]
 gi|288859981|emb|CBJ13969.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Legionella longbeachae NSW150]
          Length = 92

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +IS   GLS+ DS   +  + + + +   +G++I +  FA+  VK+  +R G
Sbjct: 1  MNKKELIAAISNTSGLSKTDSETALNAVISCLTELLAKGDSIVLPGFASLSVKEHPARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T Q ++I   +VV FK  + LK+ I  
Sbjct: 61 RNPSTGQPIEIAASKVVSFKTGTKLKEAING 91


>gi|189424985|ref|YP_001952162.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
 gi|189421244|gb|ACD95642.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
          Length = 92

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 49/91 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L+ +++++ GL + ++ + V    + +     +G+ + +  F TF   ++ +R G
Sbjct: 1  MTKAELITAVAEKAGLKKVEAEKAVAAFVSAVTGCLKQGDKLSLVGFGTFSTSKRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +N QT +++ I    V  FK    LK+ +  
Sbjct: 61 QNPQTGKKITIAAATVPKFKPGKTLKEAVNG 91


>gi|53715702|ref|YP_101694.1| DNA-binding protein HU-beta [Bacteroides fragilis YCH46]
 gi|60683640|ref|YP_213784.1| putative histone-like DNA-binding protein HU3 [Bacteroides
          fragilis NCTC 9343]
 gi|253566484|ref|ZP_04843937.1| DNA-binding protein HU-beta [Bacteroides sp. 3_2_5]
 gi|265767353|ref|ZP_06095019.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16]
 gi|52218567|dbj|BAD51160.1| DNA-binding protein HU-beta [Bacteroides fragilis YCH46]
 gi|60495074|emb|CAH09893.1| putative histone-like DNA-binding protein HU3 [Bacteroides
          fragilis NCTC 9343]
 gi|251944656|gb|EES85131.1| DNA-binding protein HU-beta [Bacteroides sp. 3_2_5]
 gi|263252658|gb|EEZ24170.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16]
 gi|301165152|emb|CBW24722.1| putative histone-like DNA-binding protein HU3 [Bacteroides
          fragilis 638R]
          Length = 90

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ E GLS+ DS + +   F+ +  +   G+ I +  F TF V ++ +R+G
Sbjct: 1  MNKAELINAMAAESGLSKVDSKKALEAFFSSVTKALSAGDKISLVGFGTFSVAERSARMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T + ++I  ++V  FK  + L   I 
Sbjct: 61 INPSTKKAIEIPAKKVAKFKPGAELTDAIK 90


>gi|237711513|ref|ZP_04541994.1| DNA-binding protein HU-beta [Bacteroides sp. 9_1_42FAA]
 gi|237726030|ref|ZP_04556511.1| DNA-binding protein HU-beta [Bacteroides sp. D4]
 gi|265752938|ref|ZP_06088507.1| DNA-binding protein HU-beta [Bacteroides sp. 3_1_33FAA]
 gi|229435838|gb|EEO45915.1| DNA-binding protein HU-beta [Bacteroides dorei 5_1_36/D4]
 gi|229454208|gb|EEO59929.1| DNA-binding protein HU-beta [Bacteroides sp. 9_1_42FAA]
 gi|263236124|gb|EEZ21619.1| DNA-binding protein HU-beta [Bacteroides sp. 3_1_33FAA]
          Length = 90

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +++ E GLS+ D+ + V    + +  +   G+ + +  F TF V ++ +R G
Sbjct: 1  MNKADLISAVAAEAGLSKVDAKKAVEAFVSTVTKALKEGDKVSLIGFGTFSVAERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T   + I  ++V  FK  + L   I 
Sbjct: 61 INPSTKATITIPAKKVTKFKPGAELADAIK 90


>gi|167560912|ref|ZP_02353828.1| DNA-binding protein HU-alpha [Burkholderia oklahomensis EO147]
 gi|167571802|ref|ZP_02364676.1| DNA-binding protein HU-alpha [Burkholderia oklahomensis C6786]
          Length = 92

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++ + G S+  +   + TL   I  S  +G+++++  F +F   ++ +R G
Sbjct: 1  MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKSVSKGDSVQLIGFGSFGSGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + +KI   + V F A    K  +  
Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFKDAVNK 91


>gi|253700777|ref|YP_003021966.1| histone family protein DNA-binding protein [Geobacter sp. M21]
 gi|251775627|gb|ACT18208.1| histone family protein DNA-binding protein [Geobacter sp. M21]
          Length = 91

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++S++ +  LS K +   V  +F  + D+ + G+ I+I  F +F VK+  +  G
Sbjct: 1  MNKSELIESLAAKKTLSFKKAEEVVNAVFASMTDALLSGDRIEIRGFGSFVVKEYDAYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + +  +++  FK    LK+++
Sbjct: 61 RNPKTGESISVKAKKLPFFKVGKELKEKV 89


>gi|193215171|ref|YP_001996370.1| histone family protein DNA-binding protein [Chloroherpeton
          thalassium ATCC 35110]
 gi|193088648|gb|ACF13923.1| histone family protein DNA-binding protein [Chloroherpeton
          thalassium ATCC 35110]
          Length = 100

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 53/94 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+   GL+++++   V      + ++   GE I+I  F T++V++K  R+ 
Sbjct: 1  MTKADIVSIIASRTGLTKQETETVVDGFIEAVIEALKAGERIEIRGFGTYNVRKKNKRLA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T ++V ID + V  FK S   K  + D  +
Sbjct: 61 RNPRTGEKVVIDEKYVPTFKISKEFKSAVSDSYK 94


>gi|319943162|ref|ZP_08017445.1| integration host factor beta subunit [Lautropia mirabilis ATCC
           51599]
 gi|319743704|gb|EFV96108.1| integration host factor beta subunit [Lautropia mirabilis ATCC
           51599]
          Length = 116

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 4   TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           T+T+S+L+  +++ F  L  KD+   V T+ + +  S      I+I  F TF +  + SR
Sbjct: 17  TMTKSELIAKLAERFPQLVAKDAEYAVRTILDAMARSLADRHRIEIRGFGTFALSHRHSR 76

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           +GRN ++ + V +  + V  FK    L++ +   +  
Sbjct: 77  MGRNPKSGEPVPVPEKLVPHFKPGKQLRESVDRALHA 113


>gi|95930236|ref|ZP_01312974.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM
          684]
 gi|95133699|gb|EAT15360.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM
          684]
          Length = 91

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++++S E  L+ K +   V  +F+ +    V+G  I+I  F +F VK   S  G
Sbjct: 1  MNKSELIEALSLEKDLTYKRAEEIVNLMFDSMTQELVKGGRIEIRGFGSFVVKDYKSYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + +++  +++  FK    L++R+ +
Sbjct: 61 RNPKTGEAIQVKTKKLPFFKVGKELRERVDN 91


>gi|110598177|ref|ZP_01386454.1| Histone-like bacterial DNA-binding protein [Chlorobium
          ferrooxidans DSM 13031]
 gi|110340191|gb|EAT58689.1| Histone-like bacterial DNA-binding protein [Chlorobium
          ferrooxidans DSM 13031]
          Length = 91

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++++L++ I+ +  L++ D+ R +T     +  S   G  + ++ F TF    + +R G
Sbjct: 1  MSKAELIEKIAAQAKLTKADADRALTAFIGIVKASLKNGNDVPLAGFGTFATVDRAARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I  ++VV F+    LK  +
Sbjct: 61 RNPQTGKTITIAAKKVVKFRPGKSLKDEV 89


>gi|28872577|ref|NP_795196.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28855832|gb|AAO58891.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 111

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + + D+  +I+++  L+++ S R +  +  EI  +  R +++ +  F TF  + +G+R G
Sbjct: 21  MRKPDVAAAIAEKADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTG 80

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           +N QT + VKI     V FK    LK  + 
Sbjct: 81  KNPQTGEPVKIKASNTVAFKPGKALKDSVN 110


>gi|156934598|ref|YP_001438514.1| integration host factor subunit beta [Cronobacter sakazakii ATCC
          BAA-894]
 gi|156532852|gb|ABU77678.1| hypothetical protein ESA_02432 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 100

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ +   +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 7  MTKSELIERLASQHSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 66

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 67 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 97


>gi|82703454|ref|YP_413020.1| histone-like DNA-binding protein [Nitrosospira multiformis ATCC
          25196]
 gi|82411519|gb|ABB75628.1| bacterial nucleoid protein Hbs [Nitrosospira multiformis ATCC
          25196]
          Length = 90

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+K   +S+  +   +      I  +  +G+++ +  F TF V  + +R G
Sbjct: 1  MNKAELIDAIAKSSDISKASAGNALDGALEAIKAALKKGQSVTLVGFGTFKVGTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   + I+  +V  F A   LK  + 
Sbjct: 61 RNPRTGAAITIESTKVPKFIAGKALKDAVN 90


>gi|71066548|ref|YP_265275.1| integration host factor subunit alpha [Psychrobacter arcticus
          273-4]
 gi|123775561|sp|Q4FQ67|IHFA_PSYA2 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|71039533|gb|AAZ19841.1| histone-like bacterial DNA-binding protein [Psychrobacter
          arcticus 273-4]
          Length = 99

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 58/97 (59%), Gaps = 1/97 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS T+T+SD+++ +     L+R++    V   F+E+ +S + G+ +K+S F  F +K K 
Sbjct: 1  MS-TLTKSDMIEHLMSHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKN 59

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          SR GRN +T + V +  RRVV FK     ++++ + +
Sbjct: 60 SRPGRNPKTGEPVAVSARRVVTFKTGQKFRQQVDERL 96


>gi|93007121|ref|YP_581558.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis
          K5]
 gi|123264368|sp|Q1Q8C9|IHFA_PSYCK RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|92394799|gb|ABE76074.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis
          K5]
          Length = 99

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 58/97 (59%), Gaps = 1/97 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS T+T+SD+++ +     L+R++    V   F+E+ +S + G+ +K+S F  F +K K 
Sbjct: 1  MS-TLTKSDMIEHLMNHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKN 59

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          SR GRN +T + V +  RRVV FK     ++++ + +
Sbjct: 60 SRPGRNPKTGEPVAVSARRVVTFKTGQKFRQQVDERL 96


>gi|220924844|ref|YP_002500146.1| histone family protein DNA-binding protein [Methylobacterium
          nodulans ORS 2060]
 gi|219949451|gb|ACL59843.1| histone family protein DNA-binding protein [Methylobacterium
          nodulans ORS 2060]
          Length = 105

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/95 (47%), Positives = 62/95 (65%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           KTITR+DL +++ +  GLSR +S   V T+ +EIC     GE +K+SSF +F V+ +G 
Sbjct: 3  GKTITRADLTEAVHQRVGLSRAESAALVETVLSEICTCLASGEGVKLSSFGSFVVRDRGK 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RVGRN  T  EV I PRRV+VFK S++LK  +   
Sbjct: 63 RVGRNPTTRVEVAIAPRRVMVFKPSNLLKAHVNGG 97


>gi|332342355|gb|AEE55689.1| integration host factor, beta subunit IhfB [Escherichia coli
          UMNK88]
          Length = 94

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLATQQSHIPVKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91


>gi|271500809|ref|YP_003333834.1| integration host factor subunit beta [Dickeya dadantii Ech586]
 gi|307130807|ref|YP_003882823.1| integration host factor (IHF), DNA-binding protein, subunit beta
          [Dickeya dadantii 3937]
 gi|585307|sp|P37983|IHFB_DICD3 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|399670|emb|CAA52770.1| integration host factor beta subunit [Erwinia chrysanthemi]
 gi|270344364|gb|ACZ77129.1| integration host factor, beta subunit [Dickeya dadantii Ech586]
 gi|306528336|gb|ADM98266.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Dickeya dadantii 3937]
 gi|1093153|prf||2103145B integration host factor
          Length = 94

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +  ++  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLAGQQSHIPAKVVEDAVKEMLEQMATTLASGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T ++V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGEKVELEGKYVPHFKPGKELRDRAN 91


>gi|291287622|ref|YP_003504438.1| histone family protein DNA-binding protein [Denitrovibrio
          acetiphilus DSM 12809]
 gi|290884782|gb|ADD68482.1| histone family protein DNA-binding protein [Denitrovibrio
          acetiphilus DSM 12809]
          Length = 90

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 43/89 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L++ I++  GL + D+ + +    +    +    + + +  F TF V ++  R G
Sbjct: 1  MNKKELIEKIAEMAGLKKSDAEKALKAFEDATVAALKADDKVTLVGFGTFSVSERKERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E+ I  ++V  F    + K  I
Sbjct: 61 RNPQTGAEMTIPAKKVPKFTPGKLFKDSI 89


>gi|187924976|ref|YP_001896618.1| integration host factor subunit beta [Burkholderia phytofirmans
           PsJN]
 gi|226709783|sp|B2T634|IHFB_BURPP RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|187716170|gb|ACD17394.1| integration host factor, beta subunit [Burkholderia phytofirmans
           PsJN]
          Length = 107

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 2/104 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + ++   G  I+I  F +F + ++ SRV
Sbjct: 1   MTKSELVAQLAARFPQLVLKDADFAVKTMLDAMSEALANGHRIEIRGFGSFGLNRRPSRV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           GRN ++ ++V +  + V  FK    L++R+ D   G     ++ 
Sbjct: 61  GRNPKSGEKVLVPEKYVPHFKPGKELRERV-DRRAGEPLKAEEP 103


>gi|206575911|ref|YP_002239439.1| integration host factor, beta subunit [Klebsiella pneumoniae 342]
 gi|288936290|ref|YP_003440349.1| integration host factor subunit beta [Klebsiella variicola At-22]
 gi|290510655|ref|ZP_06550025.1| integration host factor, beta subunit [Klebsiella sp. 1_1_55]
 gi|226709796|sp|B5XY84|IHFB_KLEP3 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|206564969|gb|ACI06745.1| integration host factor, beta subunit [Klebsiella pneumoniae 342]
 gi|288890999|gb|ADC59317.1| integration host factor, beta subunit [Klebsiella variicola
          At-22]
 gi|289777371|gb|EFD85369.1| integration host factor, beta subunit [Klebsiella sp. 1_1_55]
          Length = 95

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91


>gi|332294986|ref|YP_004436909.1| histone family protein DNA-binding protein [Thermodesulfobium
          narugense DSM 14796]
 gi|332178089|gb|AEE13778.1| histone family protein DNA-binding protein [Thermodesulfobium
          narugense DSM 14796]
          Length = 106

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + ++DL+ +++++  G+++KD T  V  +F+ I D+  R E +++  F TF V+++  R 
Sbjct: 1  MRKTDLINAVAEKCKGMTKKDCTVVVEAVFDSIKDALKRNEKVQLIGFGTFEVRERKERK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN ++ +E+ I   +   FKA   LK+ + 
Sbjct: 61 GRNPRSKEEIVIPAMKTPGFKAGKALKEAVQ 91


>gi|261339246|ref|ZP_05967104.1| hypothetical protein ENTCAN_05482 [Enterobacter cancerogenus ATCC
          35316]
 gi|296103086|ref|YP_003613232.1| integration host factor subunit beta [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
 gi|288319103|gb|EFC58041.1| integration host factor, beta subunit [Enterobacter cancerogenus
          ATCC 35316]
 gi|295057545|gb|ADF62283.1| integration host factor subunit beta [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
 gi|295096387|emb|CBK85477.1| integration host factor, beta subunit [Enterobacter cloacae
          subsp. cloacae NCTC 9394]
          Length = 95

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLASQQPHIPAKAVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91


>gi|311280174|ref|YP_003942405.1| integration host factor, beta subunit [Enterobacter cloacae SCF1]
 gi|308749369|gb|ADO49121.1| integration host factor, beta subunit [Enterobacter cloacae SCF1]
          Length = 94

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +  +GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91


>gi|118594371|ref|ZP_01551718.1| Bacterial nucleoid DNA-binding protein [Methylophilales bacterium
          HTCC2181]
 gi|118440149|gb|EAV46776.1| Bacterial nucleoid DNA-binding protein [Methylophilales bacterium
          HTCC2181]
          Length = 90

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+++++   G ++ ++ R +      +  +  +G+++ +  F TF V ++ +R G
Sbjct: 1  MNKGELIEAVASATGSTKAEAGRAIDATVAAVTGALKKGDSVTLIGFGTFKVAKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E+KI  R V  FKA + LK  + 
Sbjct: 61 RNPQTGAELKIAARTVPSFKAGAALKAAVN 90


>gi|150026047|ref|YP_001296873.1| histone-like DNA-binding protein HU-beta [Flavobacterium
          psychrophilum JIP02/86]
 gi|39653976|gb|AAR29587.1| Fp91 [Flavobacterium psychrophilum]
 gi|149772588|emb|CAL44071.1| Histone-like bacterial DNA-binding protein HU-beta
          [Flavobacterium psychrophilum JIP02/86]
          Length = 91

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+ ++S   G+++  +   + +    I ++  +G  + +  F ++ V  + +R G
Sbjct: 1  MNKSDLIDAMSASAGITKAAAKLALESFLGNIEETLQKGGRVSLVGFGSWSVSNRAARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT   +KI  + VV FKA + L+  +  
Sbjct: 61 RNPQTGATIKIAAKNVVKFKAGAELEIAVNK 91


>gi|150020327|ref|YP_001305681.1| histone family protein DNA-binding protein [Thermosipho
          melanesiensis BI429]
 gi|149792848|gb|ABR30296.1| histone family protein DNA-binding protein [Thermosipho
          melanesiensis BI429]
          Length = 92

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +++ +LV  ++++   L +KD    +  +F  I D+   GE +++  F TF V++   R 
Sbjct: 1  MSKKELVNMVAEKMPELKKKDIKAVIDAVFEAISDALANGERVQLIGFGTFEVRKAEERT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          G N +T +++KI  R+V  FK    LK+++  
Sbjct: 61 GVNPRTREKIKIPARKVPKFKPGKELKEKVNK 92


>gi|46202642|ref|ZP_00208599.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magnetotacticum MS-1]
          Length = 91

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  +++  G ++ D+ +    +F  I  +   G+ +++  F +F +  + ++ G
Sbjct: 1  MNKADLVSKVAELAGCTKADADKVTDAVFAAITSALKVGDEVRLVGFGSFSITNRAAKDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T   +KI   +   F A   LK  +  
Sbjct: 61 RNPRTGATIKIAASKAPKFSAGKALKDAVNG 91


>gi|225025737|ref|ZP_03714929.1| hypothetical protein EIKCOROL_02641 [Eikenella corrodens ATCC
           23834]
 gi|224941518|gb|EEG22727.1| hypothetical protein EIKCOROL_02641 [Eikenella corrodens ATCC
           23834]
          Length = 100

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 55/100 (55%), Gaps = 6/100 (6%)

Query: 5   ITRSDLVKSISKE------FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
           +T+S+L+  ++++        L+ KD  + V  L + +  +  RG+ I+I  F +F +  
Sbjct: 1   MTKSELMAHLAEKYLAQGHSRLAVKDVEQSVKVLVDAMTRALARGQRIEIRGFGSFDLNH 60

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           + +R+GRN +T ++V +  + V  FKA   L++R+    +
Sbjct: 61  RPARIGRNPKTGEKVNVPEKYVPHFKAGKELRERVDQAAK 100


>gi|317491459|ref|ZP_07949895.1| integration host protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316921006|gb|EFV42329.1| integration host protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 94

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  L  K     V  +   +  +   GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLASQQPHLPAKAVEDAVKEMLEHMATTLADGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91


>gi|149185138|ref|ZP_01863455.1| integration host factor beta-subunit [Erythrobacter sp. SD-21]
 gi|148831249|gb|EDL49683.1| integration host factor beta-subunit [Erythrobacter sp. SD-21]
          Length = 94

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 49/93 (52%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L+ +I++    L  ++  + V   F EI      G  +++  F  F  +++ +R 
Sbjct: 2  MIRSELLTAIAEDNSDLRAEEVEQVVDIFFEEISQRLTEGGRVELRGFGAFSTRERQARQ 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V +  ++V  FK    +++R+ ++
Sbjct: 62 GRNPRTGEVVDVPAKKVPYFKPGKEIRERLNEN 94


>gi|15800773|ref|NP_286787.1| integration host factor subunit beta [Escherichia coli O157:H7
          EDL933]
 gi|15830249|ref|NP_309022.1| integration host factor subunit beta [Escherichia coli O157:H7
          str. Sakai]
 gi|16128879|ref|NP_415432.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli str. K-12 substr. MG1655]
 gi|24112321|ref|NP_706831.1| integration host factor subunit beta [Shigella flexneri 2a str.
          301]
 gi|26246937|ref|NP_752977.1| integration host factor subunit beta [Escherichia coli CFT073]
 gi|30062447|ref|NP_836618.1| integration host factor subunit beta [Shigella flexneri 2a str.
          2457T]
 gi|74311469|ref|YP_309888.1| integration host factor subunit beta [Shigella sonnei Ss046]
 gi|82544651|ref|YP_408598.1| integration host factor subunit beta [Shigella boydii Sb227]
 gi|82777565|ref|YP_403914.1| integration host factor subunit beta [Shigella dysenteriae Sd197]
 gi|89107762|ref|AP_001542.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli str. K-12 substr. W3110]
 gi|91210013|ref|YP_539999.1| integration host factor subunit beta [Escherichia coli UTI89]
 gi|110641109|ref|YP_668839.1| integration host factor subunit beta [Escherichia coli 536]
 gi|110804920|ref|YP_688440.1| integration host factor subunit beta [Shigella flexneri 5 str.
          8401]
 gi|157157201|ref|YP_001462130.1| integration host factor subunit beta [Escherichia coli E24377A]
 gi|157160434|ref|YP_001457752.1| integration host factor subunit beta [Escherichia coli HS]
 gi|168751175|ref|ZP_02776197.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4113]
 gi|168757004|ref|ZP_02782011.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4401]
 gi|168762953|ref|ZP_02787960.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4501]
 gi|168769907|ref|ZP_02794914.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4486]
 gi|168776237|ref|ZP_02801244.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4196]
 gi|168784109|ref|ZP_02809116.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4076]
 gi|168787341|ref|ZP_02812348.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC869]
 gi|168801405|ref|ZP_02826412.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC508]
 gi|170020686|ref|YP_001725640.1| integration host factor subunit beta [Escherichia coli ATCC 8739]
 gi|170080570|ref|YP_001729890.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli str. K-12 substr. DH10B]
 gi|170683232|ref|YP_001744258.1| integration host factor subunit beta [Escherichia coli SMS-3-5]
 gi|170769200|ref|ZP_02903653.1| integration host factor, beta subunit [Escherichia albertii
          TW07627]
 gi|187733349|ref|YP_001880893.1| integration host factor subunit beta [Shigella boydii CDC
          3083-94]
 gi|188493972|ref|ZP_03001242.1| integration host factor, beta subunit [Escherichia coli 53638]
 gi|191166992|ref|ZP_03028815.1| integration host factor, beta subunit [Escherichia coli B7A]
 gi|191172063|ref|ZP_03033607.1| integration host factor, beta subunit [Escherichia coli F11]
 gi|193064687|ref|ZP_03045766.1| integration host factor, beta subunit [Escherichia coli E22]
 gi|193070745|ref|ZP_03051680.1| integration host factor, beta subunit [Escherichia coli E110019]
 gi|194428394|ref|ZP_03060935.1| integration host factor, beta subunit [Escherichia coli B171]
 gi|194431402|ref|ZP_03063694.1| integration host factor, beta subunit [Shigella dysenteriae 1012]
 gi|194438689|ref|ZP_03070776.1| integration host factor, beta subunit [Escherichia coli 101-1]
 gi|195940069|ref|ZP_03085451.1| integration host factor subunit beta [Escherichia coli O157:H7
          str. EC4024]
 gi|208809443|ref|ZP_03251780.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4206]
 gi|208814934|ref|ZP_03256113.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4045]
 gi|208822709|ref|ZP_03263028.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4042]
 gi|209396562|ref|YP_002269584.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4115]
 gi|209918162|ref|YP_002292246.1| integration host factor subunit beta [Escherichia coli SE11]
 gi|217325996|ref|ZP_03442080.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. TW14588]
 gi|218553499|ref|YP_002386412.1| integration host factor subunit beta [Escherichia coli IAI1]
 gi|218557817|ref|YP_002390730.1| integration host factor subunit beta [Escherichia coli S88]
 gi|218688752|ref|YP_002396964.1| integration host factor subunit beta [Escherichia coli ED1a]
 gi|218694385|ref|YP_002402052.1| integration host factor subunit beta [Escherichia coli 55989]
 gi|218700569|ref|YP_002408198.1| integration host factor subunit beta [Escherichia coli IAI39]
 gi|218704339|ref|YP_002411858.1| integration host factor subunit beta [Escherichia coli UMN026]
 gi|227884123|ref|ZP_04001928.1| integration host factor subunit beta [Escherichia coli 83972]
 gi|237707100|ref|ZP_04537581.1| integration host factor subunit beta [Escherichia sp. 3_2_53FAA]
 gi|238900170|ref|YP_002925966.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli BW2952]
 gi|253774059|ref|YP_003036890.1| integration host factor subunit beta [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|254161026|ref|YP_003044134.1| integration host factor subunit beta [Escherichia coli B str.
          REL606]
 gi|254792111|ref|YP_003076948.1| integration host factor subunit beta [Escherichia coli O157:H7
          str. TW14359]
 gi|256020960|ref|ZP_05434825.1| integration host factor subunit beta [Shigella sp. D9]
 gi|256023387|ref|ZP_05437252.1| integration host factor subunit beta [Escherichia sp. 4_1_40B]
 gi|260843162|ref|YP_003220940.1| integration host factor, beta subunit [Escherichia coli O103:H2
          str. 12009]
 gi|260854203|ref|YP_003228094.1| integration host factor, beta subunit [Escherichia coli O26:H11
          str. 11368]
 gi|260867084|ref|YP_003233486.1| integration host factor, beta subunit [Escherichia coli O111:H-
          str. 11128]
 gi|261227415|ref|ZP_05941696.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256162|ref|ZP_05948695.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. FRIK966]
 gi|291281913|ref|YP_003498731.1| Integration host factor subunit beta [Escherichia coli O55:H7
          str. CB9615]
 gi|293404217|ref|ZP_06648211.1| ihfB [Escherichia coli FVEC1412]
 gi|293409289|ref|ZP_06652865.1| integration host factor [Escherichia coli B354]
 gi|293414192|ref|ZP_06656841.1| integration host factor [Escherichia coli B185]
 gi|293433209|ref|ZP_06661637.1| integration host factor [Escherichia coli B088]
 gi|297520621|ref|ZP_06939007.1| integration host factor subunit beta [Escherichia coli OP50]
 gi|298379997|ref|ZP_06989602.1| ihfB [Escherichia coli FVEC1302]
 gi|300816984|ref|ZP_07097203.1| integration host factor, beta subunit [Escherichia coli MS 107-1]
 gi|300823652|ref|ZP_07103779.1| integration host factor, beta subunit [Escherichia coli MS 119-7]
 gi|300901658|ref|ZP_07119718.1| integration host factor, beta subunit [Escherichia coli MS 198-1]
 gi|300902929|ref|ZP_07120874.1| integration host factor, beta subunit [Escherichia coli MS 84-1]
 gi|300921051|ref|ZP_07137437.1| integration host factor, beta subunit [Escherichia coli MS 115-1]
 gi|300925410|ref|ZP_07141295.1| integration host factor, beta subunit [Escherichia coli MS 182-1]
 gi|300929607|ref|ZP_07145069.1| integration host factor, beta subunit [Escherichia coli MS 187-1]
 gi|300937744|ref|ZP_07152545.1| integration host factor, beta subunit [Escherichia coli MS 21-1]
 gi|300949726|ref|ZP_07163704.1| integration host factor, beta subunit [Escherichia coli MS 116-1]
 gi|300955440|ref|ZP_07167814.1| integration host factor, beta subunit [Escherichia coli MS 175-1]
 gi|300978463|ref|ZP_07174278.1| integration host factor, beta subunit [Escherichia coli MS 45-1]
 gi|300983138|ref|ZP_07176452.1| integration host factor, beta subunit [Escherichia coli MS 200-1]
 gi|301022406|ref|ZP_07186289.1| integration host factor, beta subunit [Escherichia coli MS 196-1]
 gi|301023015|ref|ZP_07186826.1| integration host factor, beta subunit [Escherichia coli MS 69-1]
 gi|301047829|ref|ZP_07194880.1| integration host factor, beta subunit [Escherichia coli MS 185-1]
 gi|301302480|ref|ZP_07208611.1| integration host factor, beta subunit [Escherichia coli MS 124-1]
 gi|301326623|ref|ZP_07219956.1| integration host factor, beta subunit [Escherichia coli MS 78-1]
 gi|301643432|ref|ZP_07243480.1| integration host factor, beta subunit [Escherichia coli MS 146-1]
 gi|306812635|ref|ZP_07446828.1| integration host factor subunit beta [Escherichia coli NC101]
 gi|307137541|ref|ZP_07496897.1| integration host factor subunit beta [Escherichia coli H736]
 gi|307311701|ref|ZP_07591341.1| integration host factor, beta subunit [Escherichia coli W]
 gi|309787783|ref|ZP_07682393.1| integration host factor, beta subunit [Shigella dysenteriae 1617]
 gi|309795104|ref|ZP_07689524.1| integration host factor, beta subunit [Escherichia coli MS 145-7]
 gi|312969022|ref|ZP_07783229.1| integration host factor, beta subunit [Escherichia coli 2362-75]
 gi|312971040|ref|ZP_07785219.1| integration host factor, beta subunit [Escherichia coli 1827-70]
 gi|331641438|ref|ZP_08342573.1| integration host factor, beta subunit [Escherichia coli H736]
 gi|331646177|ref|ZP_08347280.1| integration host factor, beta subunit [Escherichia coli M605]
 gi|331651932|ref|ZP_08352951.1| integration host factor, beta subunit [Escherichia coli M718]
 gi|331656983|ref|ZP_08357945.1| integration host factor, beta subunit [Escherichia coli TA206]
 gi|331662325|ref|ZP_08363248.1| integration host factor, beta subunit [Escherichia coli TA143]
 gi|331667289|ref|ZP_08368154.1| integration host factor, beta subunit [Escherichia coli TA271]
 gi|331676700|ref|ZP_08377396.1| integration host factor, beta subunit [Escherichia coli H591]
 gi|331682419|ref|ZP_08383038.1| integration host factor, beta subunit [Escherichia coli H299]
 gi|332282183|ref|ZP_08394596.1| integration host factor (IHF) DNA-binding protein beta subunit
          [Shigella sp. D9]
 gi|67466112|sp|P0A6Y1|IHFB_ECOLI RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|67466113|sp|P0A6Y2|IHFB_ECOL6 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|67466114|sp|P0A6Y3|IHFB_ECO57 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|67466115|sp|P0A6Y4|IHFB_SHIFL RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|122990837|sp|Q1RDU6|IHFB_ECOUT RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|123342125|sp|Q0SX03|IHFB_SHIF8 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|123344183|sp|Q0TJE1|IHFB_ECOL5 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|123741971|sp|Q31YT8|IHFB_SHIBS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|123742113|sp|Q32E32|IHFB_SHIDS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|123773538|sp|Q3Z3K9|IHFB_SHISS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|166918545|sp|A7ZK01|IHFB_ECO24 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|166918546|sp|A7ZYL5|IHFB_ECOHS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|189045036|sp|B1IW19|IHFB_ECOLC RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709786|sp|B7MHM1|IHFB_ECO45 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709787|sp|B5YT46|IHFB_ECO5E RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709788|sp|B7NM62|IHFB_ECO7I RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709789|sp|B7M841|IHFB_ECO8A RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709790|sp|B1X852|IHFB_ECODH RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709791|sp|B7NAR1|IHFB_ECOLU RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709792|sp|B6I8Y4|IHFB_ECOSE RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709793|sp|B1LJV1|IHFB_ECOSM RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709814|sp|B2TUG9|IHFB_SHIB3 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|254803533|sp|B7LDA4|IHFB_ECO55 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|254803534|sp|B7MS27|IHFB_ECO81 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|259492034|sp|C4ZQ38|IHFB_ECOBW RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|1942276|pdb|1IHF|B Chain B, Integration Host FactorDNA COMPLEX
 gi|34811470|pdb|1OWG|B Chain B, Crystal Structure Of Wt Ihf Complexed With An Altered H'
          Site (T44a)
 gi|119389942|pdb|2HT0|B Chain B, Ihf Bound To Doubly Nicked Dna
 gi|12514078|gb|AAG55397.1|AE005280_8 integration host factor (IHF), beta subunit; site-specific
          recombination [Escherichia coli O157:H7 str. EDL933]
 gi|26107337|gb|AAN79520.1|AE016758_124 Integration host factor beta-subunit [Escherichia coli CFT073]
 gi|414749|emb|CAA28557.1| IHF (AA 1-93) [Escherichia coli K-12]
 gi|1651440|dbj|BAA35656.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli str. K12 substr. W3110]
 gi|1787141|gb|AAC73998.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli str. K-12 substr. MG1655]
 gi|13360454|dbj|BAB34418.1| integration host factor (IHF) beta subunit [Escherichia coli
          O157:H7 str. Sakai]
 gi|24051181|gb|AAN42538.1| integration host factor (IHF), beta subunit [Shigella flexneri 2a
          str. 301]
 gi|30040693|gb|AAP16424.1| integration host factor (IHF), beta subunit [Shigella flexneri 2a
          str. 2457T]
 gi|68304094|gb|AAY89705.1| IhfB [Escherichia coli LW1655F+]
 gi|73854946|gb|AAZ87653.1| integration host factor (IHF), beta subunit [Shigella sonnei
          Ss046]
 gi|81241713|gb|ABB62423.1| integration host factor, beta subunit [Shigella dysenteriae
          Sd197]
 gi|81246062|gb|ABB66770.1| integration host factor (IHF), beta subunit [Shigella boydii
          Sb227]
 gi|91071587|gb|ABE06468.1| beta subunit of IHF transcriptional dual regulator [Escherichia
          coli UTI89]
 gi|110342701|gb|ABG68938.1| integration host factor beta-subunit [Escherichia coli 536]
 gi|110614468|gb|ABF03135.1| integration host factor beta subunit [Shigella flexneri 5 str.
          8401]
 gi|157066114|gb|ABV05369.1| integration host factor, beta subunit [Escherichia coli HS]
 gi|157079231|gb|ABV18939.1| integration host factor, beta subunit [Escherichia coli E24377A]
 gi|169755614|gb|ACA78313.1| integration host factor, beta subunit [Escherichia coli ATCC
          8739]
 gi|169888405|gb|ACB02112.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli str. K-12 substr. DH10B]
 gi|170121852|gb|EDS90783.1| integration host factor, beta subunit [Escherichia albertii
          TW07627]
 gi|170520950|gb|ACB19128.1| integration host factor, beta subunit [Escherichia coli SMS-3-5]
 gi|187430341|gb|ACD09615.1| integration host factor, beta subunit [Shigella boydii CDC
          3083-94]
 gi|187768389|gb|EDU32233.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4196]
 gi|188014737|gb|EDU52859.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4113]
 gi|188489171|gb|EDU64274.1| integration host factor, beta subunit [Escherichia coli 53638]
 gi|188998657|gb|EDU67643.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4076]
 gi|189355928|gb|EDU74347.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4401]
 gi|189361153|gb|EDU79572.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4486]
 gi|189366830|gb|EDU85246.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4501]
 gi|189372671|gb|EDU91087.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC869]
 gi|189376433|gb|EDU94849.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC508]
 gi|190902986|gb|EDV62712.1| integration host factor, beta subunit [Escherichia coli B7A]
 gi|190907590|gb|EDV67185.1| integration host factor, beta subunit [Escherichia coli F11]
 gi|192927744|gb|EDV82359.1| integration host factor, beta subunit [Escherichia coli E22]
 gi|192955938|gb|EDV86406.1| integration host factor, beta subunit [Escherichia coli E110019]
 gi|194413609|gb|EDX29890.1| integration host factor, beta subunit [Escherichia coli B171]
 gi|194420227|gb|EDX36304.1| integration host factor, beta subunit [Shigella dysenteriae 1012]
 gi|194422321|gb|EDX38321.1| integration host factor, beta subunit [Escherichia coli 101-1]
 gi|208729244|gb|EDZ78845.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4206]
 gi|208731582|gb|EDZ80270.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4045]
 gi|208738194|gb|EDZ85877.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4042]
 gi|209157962|gb|ACI35395.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. EC4115]
 gi|209774858|gb|ACI85741.1| integration host factor (IHF) beta subunit [Escherichia coli]
 gi|209774860|gb|ACI85742.1| integration host factor (IHF) beta subunit [Escherichia coli]
 gi|209774862|gb|ACI85743.1| integration host factor (IHF) beta subunit [Escherichia coli]
 gi|209774864|gb|ACI85744.1| integration host factor (IHF) beta subunit [Escherichia coli]
 gi|209774866|gb|ACI85745.1| integration host factor (IHF) beta subunit [Escherichia coli]
 gi|209911421|dbj|BAG76495.1| integration host factor beta subunit [Escherichia coli SE11]
 gi|217322217|gb|EEC30641.1| integration host factor, beta subunit [Escherichia coli O157:H7
          str. TW14588]
 gi|218351117|emb|CAU96821.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli 55989]
 gi|218360267|emb|CAQ97817.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli IAI1]
 gi|218364586|emb|CAR02272.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli S88]
 gi|218370555|emb|CAR18362.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli IAI39]
 gi|218426316|emb|CAR07141.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli ED1a]
 gi|218431436|emb|CAR12314.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli UMN026]
 gi|222032643|emb|CAP75382.1| Integration host factor subunit beta [Escherichia coli LF82]
 gi|226898310|gb|EEH84569.1| integration host factor subunit beta [Escherichia sp. 3_2_53FAA]
 gi|227838875|gb|EEJ49341.1| integration host factor subunit beta [Escherichia coli 83972]
 gi|238861522|gb|ACR63520.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli BW2952]
 gi|242376727|emb|CAQ31440.1| integration host factor (IHF), beta subunit, subunit of IHF
          transcriptional dual regulator [Escherichia coli
          BL21(DE3)]
 gi|253325103|gb|ACT29705.1| integration host factor, beta subunit [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253972927|gb|ACT38598.1| integration host factor subunit beta [Escherichia coli B str.
          REL606]
 gi|253977141|gb|ACT42811.1| integration host factor subunit beta [Escherichia coli BL21(DE3)]
 gi|254591511|gb|ACT70872.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli O157:H7 str. TW14359]
 gi|257752852|dbj|BAI24354.1| integration host factor, beta subunit [Escherichia coli O26:H11
          str. 11368]
 gi|257758309|dbj|BAI29806.1| integration host factor, beta subunit [Escherichia coli O103:H2
          str. 12009]
 gi|257763440|dbj|BAI34935.1| integration host factor, beta subunit [Escherichia coli O111:H-
          str. 11128]
 gi|260449942|gb|ACX40364.1| integration host factor, beta subunit [Escherichia coli DH1]
 gi|281178043|dbj|BAI54373.1| integration host factor beta subunit [Escherichia coli SE15]
 gi|281600272|gb|ADA73256.1| Integration host factor subunit beta [Shigella flexneri 2002017]
 gi|284920763|emb|CBG33826.1| integration host factor beta-subunit (IHF-beta) [Escherichia coli
          042]
 gi|290761786|gb|ADD55747.1| Integration host factor subunit beta [Escherichia coli O55:H7
          str. CB9615]
 gi|291324028|gb|EFE63450.1| integration host factor [Escherichia coli B088]
 gi|291428803|gb|EFF01828.1| ihfB [Escherichia coli FVEC1412]
 gi|291434250|gb|EFF07223.1| integration host factor [Escherichia coli B185]
 gi|291469757|gb|EFF12241.1| integration host factor [Escherichia coli B354]
 gi|294490499|gb|ADE89255.1| integration host factor, beta subunit [Escherichia coli IHE3034]
 gi|298279695|gb|EFI21203.1| ihfB [Escherichia coli FVEC1302]
 gi|299881247|gb|EFI89458.1| integration host factor, beta subunit [Escherichia coli MS 196-1]
 gi|300300288|gb|EFJ56673.1| integration host factor, beta subunit [Escherichia coli MS 185-1]
 gi|300306972|gb|EFJ61492.1| integration host factor, beta subunit [Escherichia coli MS 200-1]
 gi|300317663|gb|EFJ67447.1| integration host factor, beta subunit [Escherichia coli MS 175-1]
 gi|300354951|gb|EFJ70821.1| integration host factor, beta subunit [Escherichia coli MS 198-1]
 gi|300397276|gb|EFJ80814.1| integration host factor, beta subunit [Escherichia coli MS 69-1]
 gi|300405071|gb|EFJ88609.1| integration host factor, beta subunit [Escherichia coli MS 84-1]
 gi|300409640|gb|EFJ93178.1| integration host factor, beta subunit [Escherichia coli MS 45-1]
 gi|300411989|gb|EFJ95299.1| integration host factor, beta subunit [Escherichia coli MS 115-1]
 gi|300418480|gb|EFK01791.1| integration host factor, beta subunit [Escherichia coli MS 182-1]
 gi|300450874|gb|EFK14494.1| integration host factor, beta subunit [Escherichia coli MS 116-1]
 gi|300457251|gb|EFK20744.1| integration host factor, beta subunit [Escherichia coli MS 21-1]
 gi|300462444|gb|EFK25937.1| integration host factor, beta subunit [Escherichia coli MS 187-1]
 gi|300523852|gb|EFK44921.1| integration host factor, beta subunit [Escherichia coli MS 119-7]
 gi|300530336|gb|EFK51398.1| integration host factor, beta subunit [Escherichia coli MS 107-1]
 gi|300842319|gb|EFK70079.1| integration host factor, beta subunit [Escherichia coli MS 124-1]
 gi|300846706|gb|EFK74466.1| integration host factor, beta subunit [Escherichia coli MS 78-1]
 gi|301078146|gb|EFK92952.1| integration host factor, beta subunit [Escherichia coli MS 146-1]
 gi|305853398|gb|EFM53837.1| integration host factor subunit beta [Escherichia coli NC101]
 gi|306908256|gb|EFN38755.1| integration host factor, beta subunit [Escherichia coli W]
 gi|307552751|gb|ADN45526.1| integration host factor, beta subunit [Escherichia coli ABU
          83972]
 gi|307627661|gb|ADN71965.1| integration host factor subunit beta [Escherichia coli UM146]
 gi|308121408|gb|EFO58670.1| integration host factor, beta subunit [Escherichia coli MS 145-7]
 gi|308924182|gb|EFP69679.1| integration host factor, beta subunit [Shigella dysenteriae 1617]
 gi|309701188|emb|CBJ00488.1| integration host factor beta-subunit (IHF-beta) [Escherichia coli
          ETEC H10407]
 gi|310336801|gb|EFQ01968.1| integration host factor, beta subunit [Escherichia coli 1827-70]
 gi|312286424|gb|EFR14337.1| integration host factor, beta subunit [Escherichia coli 2362-75]
 gi|312945432|gb|ADR26259.1| integration host factor subunit beta [Escherichia coli O83:H1
          str. NRG 857C]
 gi|313650849|gb|EFS15250.1| integration host factor, beta subunit [Shigella flexneri 2a str.
          2457T]
 gi|315060197|gb|ADT74524.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia coli W]
 gi|315135560|dbj|BAJ42719.1| integration host factor subunit beta [Escherichia coli DH1]
 gi|315257953|gb|EFU37921.1| integration host factor, beta subunit [Escherichia coli MS 85-1]
 gi|315287525|gb|EFU46936.1| integration host factor, beta subunit [Escherichia coli MS 110-3]
 gi|315291230|gb|EFU50590.1| integration host factor, beta subunit [Escherichia coli MS 153-1]
 gi|315296192|gb|EFU55500.1| integration host factor, beta subunit [Escherichia coli MS 16-3]
 gi|315619106|gb|EFU99686.1| integration host factor, beta subunit [Escherichia coli 3431]
 gi|320173253|gb|EFW48462.1| Integration host factor beta subunit [Shigella dysenteriae CDC
          74-1112]
 gi|320182020|gb|EFW56925.1| Integration host factor beta subunit [Shigella boydii ATCC 9905]
 gi|320184256|gb|EFW59069.1| Integration host factor beta subunit [Shigella flexneri CDC
          796-83]
 gi|320192602|gb|EFW67243.1| Integration host factor beta subunit [Escherichia coli O157:H7
          str. EC1212]
 gi|320196594|gb|EFW71217.1| Integration host factor beta subunit [Escherichia coli WV_060327]
 gi|320202308|gb|EFW76879.1| Integration host factor beta subunit [Escherichia coli EC4100B]
 gi|320637780|gb|EFX07572.1| integration host factor subunit beta [Escherichia coli O157:H7
          str. G5101]
 gi|320642905|gb|EFX12106.1| integration host factor subunit beta [Escherichia coli O157:H-
          str. 493-89]
 gi|320648362|gb|EFX17017.1| integration host factor subunit beta [Escherichia coli O157:H-
          str. H 2687]
 gi|320653678|gb|EFX21752.1| integration host factor subunit beta [Escherichia coli O55:H7
          str. 3256-97 TW 07815]
 gi|320659823|gb|EFX27379.1| integration host factor subunit beta [Escherichia coli O55:H7
          str. USDA 5905]
 gi|320664292|gb|EFX31443.1| integration host factor subunit beta [Escherichia coli O157:H7
          str. LSU-61]
 gi|323157201|gb|EFZ43324.1| integration host factor, beta subunit [Escherichia coli EPECa14]
 gi|323159538|gb|EFZ45518.1| integration host factor, beta subunit [Escherichia coli E128010]
 gi|323165379|gb|EFZ51166.1| integration host factor, beta subunit [Shigella sonnei 53G]
 gi|323174987|gb|EFZ60602.1| integration host factor, beta subunit [Escherichia coli LT-68]
 gi|323175465|gb|EFZ61060.1| integration host factor, beta subunit [Escherichia coli 1180]
 gi|323185382|gb|EFZ70746.1| integration host factor, beta subunit [Escherichia coli 1357]
 gi|323190732|gb|EFZ76001.1| integration host factor, beta subunit [Escherichia coli RN587/1]
 gi|323379243|gb|ADX51511.1| integration host factor, beta subunit [Escherichia coli KO11]
 gi|323938018|gb|EGB34280.1| integration host protein [Escherichia coli E1520]
 gi|323942828|gb|EGB38993.1| integration host protein [Escherichia coli E482]
 gi|323947299|gb|EGB43307.1| integration host protein [Escherichia coli H120]
 gi|323953381|gb|EGB49247.1| integration host protein [Escherichia coli H252]
 gi|323958217|gb|EGB53926.1| integration host protein [Escherichia coli H263]
 gi|323962904|gb|EGB58478.1| integration host protein [Escherichia coli H489]
 gi|323967159|gb|EGB62583.1| integration host protein [Escherichia coli M863]
 gi|323973213|gb|EGB68405.1| integration host protein [Escherichia coli TA007]
 gi|323976701|gb|EGB71789.1| integration host protein [Escherichia coli TW10509]
 gi|324009836|gb|EGB79055.1| integration host factor, beta subunit [Escherichia coli MS 57-2]
 gi|324012972|gb|EGB82191.1| integration host factor, beta subunit [Escherichia coli MS 60-1]
 gi|324019079|gb|EGB88298.1| integration host factor, beta subunit [Escherichia coli MS 117-3]
 gi|324117223|gb|EGC11131.1| integration host protein [Escherichia coli E1167]
 gi|326338193|gb|EGD62022.1| Integration host factor beta subunit [Escherichia coli O157:H7
          str. 1125]
 gi|326346170|gb|EGD69908.1| Integration host factor beta subunit [Escherichia coli O157:H7
          str. 1044]
 gi|327253702|gb|EGE65331.1| integration host factor, beta subunit [Escherichia coli STEC_7v]
 gi|330910692|gb|EGH39202.1| integration host factor beta subunit [Escherichia coli AA86]
 gi|331038236|gb|EGI10456.1| integration host factor, beta subunit [Escherichia coli H736]
 gi|331044929|gb|EGI17056.1| integration host factor, beta subunit [Escherichia coli M605]
 gi|331050210|gb|EGI22268.1| integration host factor, beta subunit [Escherichia coli M718]
 gi|331055231|gb|EGI27240.1| integration host factor, beta subunit [Escherichia coli TA206]
 gi|331060747|gb|EGI32711.1| integration host factor, beta subunit [Escherichia coli TA143]
 gi|331065645|gb|EGI37538.1| integration host factor, beta subunit [Escherichia coli TA271]
 gi|331075389|gb|EGI46687.1| integration host factor, beta subunit [Escherichia coli H591]
 gi|331080050|gb|EGI51229.1| integration host factor, beta subunit [Escherichia coli H299]
 gi|332093267|gb|EGI98327.1| integration host factor, beta subunit [Shigella boydii 5216-82]
 gi|332104535|gb|EGJ07881.1| integration host factor (IHF) DNA-binding protein beta subunit
          [Shigella sp. D9]
 gi|332760079|gb|EGJ90377.1| integration host factor, beta subunit [Shigella flexneri 2747-71]
 gi|332762681|gb|EGJ92944.1| integration host factor, beta subunit [Shigella flexneri K-671]
 gi|333006353|gb|EGK25861.1| integration host factor, beta subunit [Shigella flexneri VA-6]
 gi|333006934|gb|EGK26429.1| integration host factor, beta subunit [Shigella flexneri K-218]
 gi|333008890|gb|EGK28350.1| integration host factor, beta subunit [Shigella flexneri K-272]
 gi|333020034|gb|EGK39305.1| integration host factor, beta subunit [Shigella flexneri K-304]
 gi|333020200|gb|EGK39470.1| integration host factor, beta subunit [Shigella flexneri K-227]
          Length = 94

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91


>gi|333029611|ref|ZP_08457672.1| histone family protein DNA-binding protein [Bacteroides coprosuis
          DSM 18011]
 gi|332740208|gb|EGJ70690.1| histone family protein DNA-binding protein [Bacteroides coprosuis
          DSM 18011]
          Length = 90

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++++ GLS+ DS + +    + + D+   G+ + +  F TF V ++ +R G
Sbjct: 1  MNKAELISAMAEKSGLSKVDSKKALDAFMSVVSDTLKSGDKVSLIGFGTFSVSERKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T + ++I  ++V  FKA   L + + 
Sbjct: 61 INPATQKPIEIPAKKVAKFKAGLDLAEAVK 90


>gi|332711135|ref|ZP_08431069.1| bacterial nucleoid protein Hbs [Lyngbya majuscula 3L]
 gi|332350117|gb|EGJ29723.1| bacterial nucleoid protein Hbs [Lyngbya majuscula 3L]
          Length = 94

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV  ++++  +++K +   +T     I ++   G+ + +  F +F  +++ +R G
Sbjct: 1  MNKGELVDKVAEKATVTKKQADAVLTATIETIMEAVSEGDKVTLVGFGSFESRERKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T ++++I   +V  F A  + K+R+ 
Sbjct: 61 RNPKTGEKMEIPATKVPAFSAGKVFKERVA 90


>gi|300309668|ref|YP_003773760.1| HU histone family DNA-binding protein [Herbaspirillum seropedicae
           SmR1]
 gi|300072453|gb|ADJ61852.1| HU histone family DNA-binding protein [Herbaspirillum seropedicae
           SmR1]
          Length = 115

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 49/94 (52%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +S+LV  I+ +  +S+  + R + ++   I  +  +G+ +++  F +F   ++ +R G
Sbjct: 22  VNKSELVDVIAADTEISKAAAQRALDSVIENIIKAVTKGDTVQLVGFGSFSTGKRAARTG 81

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           RN QT +E+KI     V F A    K+ +    +
Sbjct: 82  RNPQTGEEIKIAAATTVKFSAGKAFKEAVNKKKK 115


>gi|326408175|gb|ADZ65240.1| integration host factor subunit beta [Brucella melitensis M28]
 gi|326537888|gb|ADZ86103.1| integration host factor, beta subunit [Brucella melitensis M5-90]
          Length = 94

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I+ +   L ++D    V  +F+EI ++   G  +++ SF  F VK + +R 
Sbjct: 1  MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRSFGAFSVKNRPARS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T + V ++ + V  FK    L+ R+   +
Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRLNGAV 94


>gi|254427198|ref|ZP_05040905.1| DNA-binding protein HU [Alcanivorax sp. DG881]
 gi|196193367|gb|EDX88326.1| DNA-binding protein HU [Alcanivorax sp. DG881]
          Length = 85

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 46/85 (54%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          ++ +I+    +S+ D+ R + +    +  +  +G+++ +  F TF VK++ +R GRN QT
Sbjct: 1  MIDAIAASADISKADAGRALDSTLEAVTGALKKGDSVSLVGFGTFAVKRREARDGRNPQT 60

Query: 70 NQEVKIDPRRVVVFKASSILKKRIM 94
           Q +KI    V  FKA   LK  + 
Sbjct: 61 GQTIKIAAANVPGFKAGKALKDAVN 85


>gi|291614503|ref|YP_003524660.1| histone family protein DNA-binding protein [Sideroxydans
          lithotrophicus ES-1]
 gi|291584615|gb|ADE12273.1| histone family protein DNA-binding protein [Sideroxydans
          lithotrophicus ES-1]
          Length = 94

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 53/94 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +L+ +++++ G S+ D+ R +  L + +  +  +G+ + +  F TF V+++ +R G
Sbjct: 1  MNRKELIDALAEKTGSSKADADRNIAALIDIVTATLKKGDNVALVGFGTFEVRKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN  T  E+KI   +V  FKA + LK  +    +
Sbjct: 61 RNPATGAELKIKASKVPAFKAGATLKATVNGTKK 94


>gi|313113523|ref|ZP_07799112.1| DNA-binding protein HU [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624250|gb|EFQ07616.1| DNA-binding protein HU [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 89

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DL+  ++    +S+K + + V  +F  +  +   GE I IS F TF ++++  R G
Sbjct: 1  MTKTDLIAQVAANTEMSKKSAEQAVNAVFEALSKAMSEGEKITISGFGTFEMRERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T + + I   R +VFK    LK  +
Sbjct: 61 INPRTREPITIAASRSIVFKPGKSLKDTL 89


>gi|218548428|ref|YP_002382219.1| integration host factor subunit beta [Escherichia fergusonii ATCC
          35469]
 gi|226709795|sp|B7LN74|IHFB_ESCF3 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|218355969|emb|CAQ88585.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Escherichia fergusonii ATCC 35469]
 gi|324113757|gb|EGC07732.1| integration host protein [Escherichia fergusonii B253]
 gi|325496851|gb|EGC94710.1| integration host factor subunit beta [Escherichia fergusonii
          ECD227]
          Length = 94

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLATQQSHIPAKVVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91


>gi|237730875|ref|ZP_04561356.1| integration host factor subunit beta [Citrobacter sp. 30_2]
 gi|283833797|ref|ZP_06353538.1| integration host factor, beta subunit [Citrobacter youngae ATCC
          29220]
 gi|226906414|gb|EEH92332.1| integration host factor subunit beta [Citrobacter sp. 30_2]
 gi|291070462|gb|EFE08571.1| integration host factor, beta subunit [Citrobacter youngae ATCC
          29220]
          Length = 94

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLATQQPHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V ++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVDLEGKYVPHFKPGKELRDRAN 91


>gi|332534572|ref|ZP_08410407.1| integration host factor beta subunit [Pseudoalteromonas
          haloplanktis ANT/505]
 gi|332035992|gb|EGI72471.1| integration host factor beta subunit [Pseudoalteromonas
          haloplanktis ANT/505]
          Length = 95

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++++   +  KD    V  +  ++  S    + I+I  F +F +  +  R 
Sbjct: 1  MTKSELIEILAEQHAHVPVKDVENAVKEILEQMAGSLSTSDRIEIRGFGSFSLHFRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T   V+++ + V  FK    L+ R+ + + 
Sbjct: 61 GRNPKTGDTVELEGKHVPHFKPGKELRDRVNESIA 95


>gi|330878102|gb|EGH12251.1| DNA-binding protein HU family [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
          Length = 92

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 49/92 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + D+  +I+++  L+++ S R +  +  EI  +  R +++ +  F TF  + +G+R G
Sbjct: 1  MRKPDVAAAIAEKADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          +N QT + VKI     V FK    LK  + + 
Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKALKDSVNNS 92


>gi|227877728|ref|ZP_03995764.1| DNA-binding protein HU [Lactobacillus crispatus JV-V01]
 gi|256843583|ref|ZP_05549071.1| nucleoid DNA-binding protein [Lactobacillus crispatus 125-2-CHN]
 gi|256850059|ref|ZP_05555489.1| nucleoid DNA-binding protein [Lactobacillus crispatus MV-1A-US]
 gi|262047347|ref|ZP_06020304.1| DNA-binding protein [Lactobacillus crispatus MV-3A-US]
 gi|293381854|ref|ZP_06627823.1| DNA-binding protein HU [Lactobacillus crispatus 214-1]
 gi|295693326|ref|YP_003601936.1| DNA-binding protein hu [Lactobacillus crispatus ST1]
 gi|227862716|gb|EEJ70199.1| DNA-binding protein HU [Lactobacillus crispatus JV-V01]
 gi|256615003|gb|EEU20204.1| nucleoid DNA-binding protein [Lactobacillus crispatus 125-2-CHN]
 gi|256713031|gb|EEU28022.1| nucleoid DNA-binding protein [Lactobacillus crispatus MV-1A-US]
 gi|260572321|gb|EEX28884.1| DNA-binding protein [Lactobacillus crispatus MV-3A-US]
 gi|290921575|gb|EFD98608.1| DNA-binding protein HU [Lactobacillus crispatus 214-1]
 gi|295031432|emb|CBL50911.1| DNA-binding protein HU [Lactobacillus crispatus ST1]
          Length = 94

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 43/93 (46%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +TI++  LV  I+ +   ++ D    +    + +  +   G  +++  F  F ++ + +R
Sbjct: 2  ETISKKQLVDQIAAKTDATKTDINTILDAYIDVVKSNVAEGNKVQLVGFGAFELRHRAAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           GRN QT +E++I    V  FK     K  +  
Sbjct: 62 KGRNPQTGKEIEIAASNVPAFKPGKSFKDEVNK 94


>gi|294140846|ref|YP_003556824.1| integration host factor subunit beta [Shewanella violacea DSS12]
 gi|293327315|dbj|BAJ02046.1| integration host factor, beta subunit [Shewanella violacea DSS12]
          Length = 95

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  LS K+    +  +  ++  +   G+ I+I  F +F +  +  R 
Sbjct: 1  MTKSELIEKLASRQSQLSAKEVESAIKEMLEQMAQTLESGDRIEIRGFGSFSLHFRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V++D + V  FK    L++R+
Sbjct: 61 GRNPKTGTSVQLDGKYVPHFKPGKELRERV 90


>gi|119471944|ref|ZP_01614229.1| putative integration host factor (iHF), beta subunit,
          site-specific recombination [Alteromonadales bacterium
          TW-7]
 gi|119445202|gb|EAW26493.1| putative integration host factor (iHF), beta subunit,
          site-specific recombination [Alteromonadales bacterium
          TW-7]
          Length = 95

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+++++++   +  KD    V  +  ++  S    + I+I  F +F +  +  R 
Sbjct: 1  MTKSELIETLAEQHAHVPVKDVENAVKEILEQMAGSLSSSDRIEIRGFGSFSLHFRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T   V++D + V  FK    L+ R+   + 
Sbjct: 61 GRNPKTGDTVELDGKHVPHFKPGKELRDRVNASIA 95


>gi|256112658|ref|ZP_05453579.1| integration host factor subunit beta [Brucella melitensis bv. 3
          str. Ether]
 gi|265994098|ref|ZP_06106655.1| integration host factor subunit beta [Brucella melitensis bv. 3
          str. Ether]
 gi|262765079|gb|EEZ11000.1| integration host factor subunit beta [Brucella melitensis bv. 3
          str. Ether]
          Length = 94

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I+ +   L ++D    V  +F+EI ++   G  +++  F  F VK + +R 
Sbjct: 1  MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPTRS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T + V ++ + V  FK    L+ R+   +
Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRLNGAV 94


>gi|238753504|ref|ZP_04614867.1| Integration host factor subunit beta [Yersinia ruckeri ATCC
          29473]
 gi|238708457|gb|EEQ00812.1| Integration host factor subunit beta [Yersinia ruckeri ATCC
          29473]
          Length = 94

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +   GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLAGQQSHIPAKAVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91


>gi|162456892|ref|YP_001619259.1| integration host factor alpha-subunit [Sorangium cellulosum 'So
          ce 56']
 gi|161167474|emb|CAN98779.1| integration host factor alpha-subunit [Sorangium cellulosum 'So
          ce 56']
          Length = 101

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T++++V+++    G  S+K+S   V  +F  + ++  RGE IKIS F  F ++ K  R 
Sbjct: 1  MTKAEIVQAVYSRLGGFSKKESADLVDLVFETMKETLGRGEKIKISGFGNFVLRDKRQRQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN QT   + I  RRV+ FKAS ILK+ + 
Sbjct: 61 GRNPQTGDPILITERRVLNFKASQILKQALN 91


>gi|220907896|ref|YP_002483207.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
          7425]
 gi|219864507|gb|ACL44846.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
          7425]
          Length = 95

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +++++  + +KD+   +T     I ++   G+ + +  F +F  +++ +R G
Sbjct: 1  MNKGELVDAVAQKANVKKKDADAVLTAALETIMETVSSGDKVTLVGFGSFEPRERQAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +TN+++ I   RV  F A  + K+++ 
Sbjct: 61 RNPKTNEKMVIPATRVPAFSAGKLFKEKVA 90


>gi|78064724|ref|YP_367493.1| histone-like DNA-binding protein [Burkholderia sp. 383]
 gi|107021567|ref|YP_619894.1| histone-like DNA-binding protein [Burkholderia cenocepacia AU
          1054]
 gi|115350111|ref|YP_771950.1| histone family protein DNA-binding protein [Burkholderia
          ambifaria AMMD]
 gi|116688089|ref|YP_833712.1| histone family protein DNA-binding protein [Burkholderia
          cenocepacia HI2424]
 gi|134294197|ref|YP_001117932.1| histone family protein DNA-binding protein [Burkholderia
          vietnamiensis G4]
 gi|161523246|ref|YP_001578258.1| histone family protein DNA-binding protein [Burkholderia
          multivorans ATCC 17616]
 gi|167584991|ref|ZP_02377379.1| DNA-binding protein HU-alpha [Burkholderia ubonensis Bu]
 gi|170699034|ref|ZP_02890091.1| histone family protein DNA-binding protein [Burkholderia
          ambifaria IOP40-10]
 gi|170731439|ref|YP_001763386.1| histone family protein DNA-binding protein [Burkholderia
          cenocepacia MC0-3]
 gi|171318830|ref|ZP_02907967.1| histone family protein DNA-binding protein [Burkholderia
          ambifaria MEX-5]
 gi|172059131|ref|YP_001806783.1| histone family protein DNA-binding protein [Burkholderia
          ambifaria MC40-6]
 gi|189348897|ref|YP_001944525.1| DNA-binding protein HU-beta [Burkholderia multivorans ATCC 17616]
 gi|206561866|ref|YP_002232631.1| DNA-binding protein HU-alpha [Burkholderia cenocepacia J2315]
 gi|221202221|ref|ZP_03575256.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD2M]
 gi|221208718|ref|ZP_03581717.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD2]
 gi|221214332|ref|ZP_03587304.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD1]
 gi|238025719|ref|YP_002909950.1| DNA-binding protein HU-alpha [Burkholderia glumae BGR1]
 gi|254246661|ref|ZP_04939982.1| DNA-binding protein HU-alpha [Burkholderia cenocepacia PC184]
 gi|254251009|ref|ZP_04944327.1| hypothetical protein BDAG_00176 [Burkholderia dolosa AUO158]
 gi|330815006|ref|YP_004358711.1| histone-like DNA-binding protein [Burkholderia gladioli BSR3]
 gi|77965469|gb|ABB06849.1| Histone-like DNA-binding protein [Burkholderia sp. 383]
 gi|105891756|gb|ABF74921.1| histone-like DNA-binding protein [Burkholderia cenocepacia AU
          1054]
 gi|115280099|gb|ABI85616.1| histone family protein DNA-binding protein [Burkholderia
          ambifaria AMMD]
 gi|116646178|gb|ABK06819.1| histone family protein DNA-binding protein [Burkholderia
          cenocepacia HI2424]
 gi|124871437|gb|EAY63153.1| DNA-binding protein HU-alpha [Burkholderia cenocepacia PC184]
 gi|124893618|gb|EAY67498.1| hypothetical protein BDAG_00176 [Burkholderia dolosa AUO158]
 gi|134137354|gb|ABO53097.1| histone family protein DNA-binding protein [Burkholderia
          vietnamiensis G4]
 gi|160340675|gb|ABX13761.1| histone family protein DNA-binding protein [Burkholderia
          multivorans ATCC 17616]
 gi|169814681|gb|ACA89264.1| histone family protein DNA-binding protein [Burkholderia
          cenocepacia MC0-3]
 gi|170136070|gb|EDT04341.1| histone family protein DNA-binding protein [Burkholderia
          ambifaria IOP40-10]
 gi|171095971|gb|EDT40904.1| histone family protein DNA-binding protein [Burkholderia
          ambifaria MEX-5]
 gi|171991648|gb|ACB62567.1| histone family protein DNA-binding protein [Burkholderia
          ambifaria MC40-6]
 gi|189332919|dbj|BAG41989.1| DNA-binding protein HU-beta [Burkholderia multivorans ATCC 17616]
 gi|198037908|emb|CAR53853.1| DNA-binding protein HU-alpha [Burkholderia cenocepacia J2315]
 gi|221165987|gb|EED98461.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD1]
 gi|221171350|gb|EEE03798.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD2]
 gi|221178015|gb|EEE10427.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD2M]
 gi|237874913|gb|ACR27246.1| DNA-binding protein HU-alpha [Burkholderia glumae BGR1]
 gi|325521652|gb|EGD00422.1| DNA-binding protein HU-alpha [Burkholderia sp. TJI49]
 gi|327367399|gb|AEA58755.1| histone-like DNA-binding protein [Burkholderia gladioli BSR3]
          Length = 92

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++ + G S+  +   + TL   I  +  +G+A+++  F +F   ++ +R G
Sbjct: 1  MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDAVQLIGFGSFGSGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + +KI   + V F A    K  +  
Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFKDAVNK 91


>gi|284048950|ref|YP_003399289.1| histone family protein DNA-binding protein [Acidaminococcus
          fermentans DSM 20731]
 gi|283953171|gb|ADB47974.1| histone family protein DNA-binding protein [Acidaminococcus
          fermentans DSM 20731]
          Length = 91

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  ++ +  L +KD+ + V    + + ++    + +++  F TF  + + +R G
Sbjct: 1  MNKSELIAEVASKTALPKKDAEKAVNAFIDTVKEAVANKDKVQLIGFGTFEARVRNARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +N +T + ++I    V  FKA    K  +  
Sbjct: 61 KNPRTGETIEIAEANVPAFKAGKAFKDAVNK 91


>gi|167461596|ref|ZP_02326685.1| DNA-binding protein HU [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 114

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 55/90 (61%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +  LV+ ++K  G S+K++ + VT + + I ++  +G+ +++  F  F V+ + +R+G
Sbjct: 23  MNKEQLVEVVAKSSGFSKKNAEKAVTHVLDSIFEALKQGKEVQLVGFGKFDVRSREARMG 82

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN +T +EV++   +V VF A   LKK + 
Sbjct: 83  RNRKTGEEVELPAGKVPVFTAGITLKKALN 112


>gi|91775765|ref|YP_545521.1| histone-like DNA-binding protein [Methylobacillus flagellatus KT]
 gi|91709752|gb|ABE49680.1| histone-like DNA-binding protein [Methylobacillus flagellatus KT]
          Length = 91

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 46/89 (51%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +S+L++ I+K  GLS+  + R +      I  S  +GE + +  F TF+V ++ +R GR
Sbjct: 3  NKSELIEQIAKSAGLSKAAAGRALDATTAAITKSLKKGELVTLIGFGTFYVGKRAARNGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N +T   +KI       F+A   LK  + 
Sbjct: 63 NPRTGATIKIKAANSPKFRAGKALKDAVN 91


>gi|260437765|ref|ZP_05791581.1| DNA-binding protein HU [Butyrivibrio crossotus DSM 2876]
 gi|292809787|gb|EFF68992.1| DNA-binding protein HU [Butyrivibrio crossotus DSM 2876]
          Length = 90

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L  +I+++  +S+KD+ + +      + +   +GE I++  F TF V ++ +R G
Sbjct: 1  MNKTELASAIAEKAEISKKDAEKALKAFTEVVAEELKKGEKIQLVGFGTFEVGERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N +T + +KI   +   FKA   LK  + 
Sbjct: 61 INPRTRETIKIAAAKTPKFKAGKQLKDSLN 90


>gi|317047559|ref|YP_004115207.1| integration host factor subunit beta [Pantoea sp. At-9b]
 gi|316949176|gb|ADU68651.1| integration host factor, beta subunit [Pantoea sp. At-9b]
          Length = 94

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLAGQQTHIPAKVVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V ++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVDLEGKYVPHFKPGKELRDRAN 91


>gi|322419661|ref|YP_004198884.1| histone family protein DNA-binding protein [Geobacter sp. M18]
 gi|320126048|gb|ADW13608.1| histone family protein DNA-binding protein [Geobacter sp. M18]
          Length = 91

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++S++ +  LS K +   V  +F  + ++ + G+ I+I  F +F VK+  +  G
Sbjct: 1  MNKSELIESLAAKKALSFKKAEEVVNAVFASMTEALLSGDRIEIRGFGSFVVKEYDAYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + + +  +++  FK    LK+++  
Sbjct: 61 RNPKTGESISVKAKKLPFFKVGKELKEKVSG 91


>gi|251789938|ref|YP_003004659.1| integration host factor subunit beta [Dickeya zeae Ech1591]
 gi|247538559|gb|ACT07180.1| integration host factor, beta subunit [Dickeya zeae Ech1591]
          Length = 94

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ +   +  K     V  +  ++  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLAGQHSHIPAKVVEDAVKEMLEQMATTLASGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T ++V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGEKVELEGKYVPHFKPGKELRDRAN 91


>gi|119488961|ref|ZP_01621896.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106]
 gi|119454917|gb|EAW36060.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106]
          Length = 98

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 45/92 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  LV+  + + G+++K +   V+ +   I D+   GE + +  F +F  + + +R G
Sbjct: 1  MNKEQLVQETAFKAGVTKKQADAIVSAICESIMDAVAEGEKVTLVGFGSFEARHRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN  T Q + I    V  F A    K+ + ++
Sbjct: 61 RNPSTGQPMTIPETTVPAFSAGKAFKEMVAEE 92


>gi|317486543|ref|ZP_07945366.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
 gi|316922218|gb|EFV43481.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
          Length = 91

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T++DLV  I  + GL ++  + +F+    + + ++   GE +  + F +F V ++  R 
Sbjct: 1  MTKADLVDKIHAKAGLGTKAATEQFLDAAISVLSETIANGEQVSFTGFGSFKVVERSERK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E  I   RVV F     LK+ + 
Sbjct: 61 GRNPRTGEECLIPASRVVKFTPGKALKEAVK 91


>gi|329298227|ref|ZP_08255563.1| integration host factor subunit beta [Plautia stali symbiont]
          Length = 94

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ +   +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLAGQHTHIPAKVVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91


>gi|42522297|ref|NP_967677.1| DNA-binding protein HU [Bdellovibrio bacteriovorus HD100]
 gi|39574828|emb|CAE78670.1| DNA-binding protein HU [Bdellovibrio bacteriovorus HD100]
          Length = 97

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 56/96 (58%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++DL+  IS++ G++R  +   V T+F+ + ++ +R + I+I  F +F  +Q G+  G
Sbjct: 1   MTKADLINLISEKAGITRVKAETVVNTIFDSMVEALMRDDRIEIRGFGSFVNRQYGAYKG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RN +T + + +D +++  FK    LK+ I      +
Sbjct: 61  RNPRTGEIINVDEKKLPFFKVGKELKEDINGGPEEK 96


>gi|83311178|ref|YP_421442.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1]
 gi|82946019|dbj|BAE50883.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magneticum AMB-1]
          Length = 92

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++    +++ D+   +  +F  I  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKSELINAVADSAKMTKADAGNAIDAVFAAITTAMKSGDDVRLVGFGTFSVSARPAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + + I   +   F A   LK  I  
Sbjct: 61 RNPQTGKTLTIAASKSAKFTAGKSLKDTING 91


>gi|307244028|ref|ZP_07526147.1| DNA-binding protein HU [Peptostreptococcus stomatis DSM 17678]
 gi|306492552|gb|EFM64586.1| DNA-binding protein HU [Peptostreptococcus stomatis DSM 17678]
          Length = 93

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  +S++  L++K+S   +      + ++ V G+ +++  F TF  +++ +R G
Sbjct: 1  MNKAELVAKMSEKSNLTKKESELALNAFMKVVEETLVAGDKVQLVGFGTFETRERAARSG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95
          RN +  +E ++I   +  VFKA   LK+ + +
Sbjct: 61 RNPRKPEEVIEIPASKAPVFKAGKGLKELVNN 92


>gi|124290|sp|P23303|IHFB_SERMA RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|152829|gb|AAA26557.1| integration host factor beta-subunit [Serratia marcescens]
          Length = 94

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +   GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLAGQQSHIPAKAVEDAVKEMLEHMAATLAEGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V++D + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRAN 91


>gi|298489847|ref|YP_003720024.1| histone family protein DNA-binding protein ['Nostoc azollae'
          0708]
 gi|298231765|gb|ADI62901.1| histone family protein DNA-binding protein ['Nostoc azollae'
          0708]
          Length = 94

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +++++  +++K +   ++     I ++   G+ + +  F +F  +++ +R G
Sbjct: 1  MNKGELVDAVAEKASVTKKQADAVLSAAIETIIEAVASGDKVTLVGFGSFESRERKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +TN++++I   +V  F A  + ++R+ 
Sbjct: 61 RNPKTNEKMEIPATKVPAFSAGKLFRERVA 90


>gi|218885662|ref|YP_002434983.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris str. 'Miyazaki F']
 gi|218756616|gb|ACL07515.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris str. 'Miyazaki F']
          Length = 91

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K++S+E  +  +++   V T  + + ++   G+ ++I  F +F VK  G   G
Sbjct: 1  MNKSELIKTLSEETNIPIEEAAMVVNTFVDNMKEALADGDRVEIRGFGSFKVKDYGGYSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T   V + P+R+  F+A   LK+ + D
Sbjct: 61 RNPKTGDMVVVQPKRLPFFRAGKELKEFLND 91


>gi|189465271|ref|ZP_03014056.1| hypothetical protein BACINT_01617 [Bacteroides intestinalis DSM
          17393]
 gi|189437545|gb|EDV06530.1| hypothetical protein BACINT_01617 [Bacteroides intestinalis DSM
          17393]
          Length = 90

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 45/85 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++ E GL++ DS + +      I  +   G+ + +  F TF V ++ +R+G
Sbjct: 1  MNKSELISAMAAESGLTKADSKKALDAFMASITKALKAGDKVSLVGFGTFAVSERAARLG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N  T Q + I  ++V  FK    L
Sbjct: 61 INPSTKQSITIPAKKVAKFKPGMEL 85


>gi|49073590|gb|AAT49331.1| PA3161 [synthetic construct]
          Length = 95

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I    G LS KD    + T+  ++  +   G+ I+I  F +  +  +  RV
Sbjct: 1  MTKSELIERIVTHQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSVSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V++D + V  FK    L+ R+ +
Sbjct: 61 GRNPKTGESVRLDGKFVPHFKPGKELRDRVNE 92


>gi|289628106|ref|ZP_06461060.1| HU family DNA-binding protein [Pseudomonas syringae pv. aesculi
          str. NCPPB3681]
 gi|289651294|ref|ZP_06482637.1| HU family DNA-binding protein [Pseudomonas syringae pv. aesculi
          str. 2250]
 gi|330870971|gb|EGH05680.1| HU family DNA-binding protein [Pseudomonas syringae pv. aesculi
          str. 0893_23]
          Length = 92

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 49/92 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + ++  +I+++  L+++ S R +  +  EI  +  R +++ +  F TF  + +G+R G
Sbjct: 1  MRKPEVAAAIAEKADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          +N QT + VKI     V FK    LK  + + 
Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKALKDSVNNS 92


>gi|220905203|ref|YP_002480515.1| histone family protein DNA-binding protein [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869502|gb|ACL49837.1| histone family protein DNA-binding protein [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 91

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K+++ E  +   D++  V T F+ +  S + GE I+I  F +F +K+     G
Sbjct: 1  MNKSELIKALADETNIPFDDASMVVNTFFDAMKQSLLAGERIEIRGFGSFKIKEYEGYAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + V +  +R+  F+A   LK+ I  
Sbjct: 61 RNPKTGESVTVASKRLPFFRAGKELKEFINQ 91


>gi|323436199|ref|ZP_01051348.2| DNA-binding protein HU-beta [Dokdonia donghaensis MED134]
 gi|321496514|gb|EAQ37896.2| DNA-binding protein HU-beta [Dokdonia donghaensis MED134]
          Length = 90

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  +++  G+++  + + + +   ++  +  +G  + +  F ++ V ++ +R G
Sbjct: 1  MNKSELIDGMAEHAGITKAAAKKALESFLGDVEGTLKKGGRVSLVGFGSWSVSKRNAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI  + VV FKA S L   + 
Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGSELASSVN 90


>gi|294012141|ref|YP_003545601.1| integration host factor beta subunit [Sphingobium japonicum
          UT26S]
 gi|292675471|dbj|BAI96989.1| integration host factor beta subunit [Sphingobium japonicum
          UT26S]
          Length = 96

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ +++E   L+ ++  R V   F EI D    G  +++  F  F  + + +R 
Sbjct: 1  MIRSELIQKLAEENPNLNLQEVERIVDLFFKEIVDRLSSGGRVELRGFGAFTTRAREART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T ++V +D +RV  FK    +++R+ 
Sbjct: 61 GRNPRTGEQVPVDAKRVPYFKPGKEMRERLN 91


>gi|284052866|ref|ZP_06383076.1| histone family protein DNA-binding protein [Arthrospira platensis
          str. Paraca]
 gi|291569732|dbj|BAI92004.1| DNA-binding protein HU [Arthrospira platensis NIES-39]
          Length = 92

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++++ G+++K +   ++     + D+    E + +  F +F  +++ +R G
Sbjct: 1  MNKGELIDAVAEKAGVTKKQADAVLSAALESVIDAVATQEKVTLVGFGSFEARKRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +++ I    V  F A  + K+++ 
Sbjct: 61 RNPQTGEKMDIPETWVPAFSAGKMFKEKVA 90


>gi|188534268|ref|YP_001908065.1| integration host factor subunit beta [Erwinia tasmaniensis
          Et1/99]
 gi|226709794|sp|B2VC76|IHFB_ERWT9 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|188029310|emb|CAO97187.1| Integration host factor beta-subunit (IHF-beta) [Erwinia
          tasmaniensis Et1/99]
          Length = 95

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +   GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLAGQQSHIPAKVVEDAVKEMLEHMATTLSEGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91


>gi|254467848|ref|ZP_05081254.1| integration host factor, beta subunit [beta proteobacterium KB13]
 gi|207086658|gb|EDZ63941.1| integration host factor, beta subunit [beta proteobacterium KB13]
          Length = 92

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 54/92 (58%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRS+L++ +S +F  L +KD+   V  + + +  +   G+ I+I  F +F + ++ +R+
Sbjct: 1  MTRSELIEKLSSQFQHLLQKDAELVVKNILDSMSSTLNNGKRIEIRGFGSFSLNKRPARI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T ++V I  + V  FKA   L+ R+  
Sbjct: 61 GRNPKTGEKVHISEKLVPHFKAGKELRSRVDK 92


>gi|56477449|ref|YP_159038.1| DNA-binding protein HU-alpha [Aromatoleum aromaticum EbN1]
 gi|56313492|emb|CAI08137.1| DNA-binding protein hu-alpha [Aromatoleum aromaticum EbN1]
          Length = 92

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + + V++++    +SR  + R ++T+ + I +    GE +  + F +F V ++  R G
Sbjct: 1  MNKGEFVEALADRLDVSRAQADRALSTVLDIIVERMAAGEKVAFTGFGSFEVSERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   +KI   RV  F A + LK  I 
Sbjct: 61 RNPQTGASIKIAASRVPKFSAGATLKTAIN 90


>gi|296159961|ref|ZP_06842781.1| integration host factor, beta subunit [Burkholderia sp. Ch1-1]
 gi|295889707|gb|EFG69505.1| integration host factor, beta subunit [Burkholderia sp. Ch1-1]
          Length = 107

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 2/104 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + ++   G  I+I  F +F + ++ SRV
Sbjct: 1   MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSEALANGHRIEIRGFGSFGLNRRPSRV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           GRN ++ ++V +  + V  FK    L++R+ D   G     ++ 
Sbjct: 61  GRNPKSGEKVLVPEKYVPHFKPGKELRERV-DRRAGEPLKAEEP 103


>gi|294507387|ref|YP_003571445.1| Histone-like bacterial DNA-binding protein [Salinibacter ruber M8]
 gi|294343715|emb|CBH24493.1| Histone-like bacterial DNA-binding protein [Salinibacter ruber M8]
          Length = 100

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 50/98 (51%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           ++T++DL+  I+   GL++ ++   V      +  +   G  I++  F  F V+ +  R 
Sbjct: 2   SMTKADLIDQIADGTGLTKIETRAVVEGFMTAVRGAMKEGRRIELREFGVFEVQHRAPRT 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN QTN+ V+I+ R   VF+ S  L + +    +  +
Sbjct: 62  GRNPQTNEPVEIEDRYKPVFRPSDKLSEAVNAAHKADE 99


>gi|317051488|ref|YP_004112604.1| histone family protein DNA-binding protein [Desulfurispirillum
          indicum S5]
 gi|316946572|gb|ADU66048.1| histone family protein DNA-binding protein [Desulfurispirillum
          indicum S5]
          Length = 91

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 43/91 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +L+  +++  G+++  + + +    + +  +   GE + +  F TF V ++  R G
Sbjct: 1  MTKKELIGKMAEASGITKVQAEKALNAFIDSVSSTLKSGEKVTLVGFGTFQVSERAKRQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T   + I  R+   F     LK+ +  
Sbjct: 61 INPRTKTPITIPARKSPKFVPGKALKELVDK 91


>gi|291616907|ref|YP_003519649.1| IhfB [Pantoea ananatis LMG 20103]
 gi|304397072|ref|ZP_07378951.1| integration host factor, beta subunit [Pantoea sp. aB]
 gi|308186258|ref|YP_003930389.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea
          vagans C9-1]
 gi|291151937|gb|ADD76521.1| IhfB [Pantoea ananatis LMG 20103]
 gi|304355221|gb|EFM19589.1| integration host factor, beta subunit [Pantoea sp. aB]
 gi|308056768|gb|ADO08940.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea
          vagans C9-1]
 gi|327393335|dbj|BAK10757.1| integration host factor beta- subunit IhfB [Pantoea ananatis
          AJ13355]
          Length = 94

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ +   +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLAGQHTHIPAKVVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V ++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVDLEGKYVPHFKPGKELRDRAN 91


>gi|189424909|ref|YP_001952086.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
 gi|189421168|gb|ACD95566.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
          Length = 93

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 55/92 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++ + +  +S K +   V  +FN + ++   GE I+I    +F VK+ G+  G
Sbjct: 1  MNKSELIETFALQREISHKRAEEVVNMIFNSMSEAMTAGERIEIRGLGSFVVKEYGAYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T + +++ P+++  FK    LK+RI+D 
Sbjct: 61 RNPKTGEPIEVKPKKLPFFKVGKELKERILDG 92


>gi|238898611|ref|YP_002924292.1| HU, DNA-binding transcriptional regulator, alpha subunit -3
          [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
          pisum)]
 gi|229466370|gb|ACQ68144.1| HU, DNA-binding transcriptional regulator, alpha subunit -3
          [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
          pisum)]
          Length = 114

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 47/92 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I++  G+++  +   +  + + I +S  + E++++  F TF+VK + +R  
Sbjct: 1  MNKAQLIDEIAENAGITKIKANTVLNIILDRITESLKKHESVQLVGFGTFNVKHRDARNA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN QT + +++    V     +  LK  +   
Sbjct: 61 RNPQTGEPIELPACYVPSLNFAKALKDALKGS 92


>gi|256830230|ref|YP_003158958.1| histone family protein DNA-binding protein [Desulfomicrobium
          baculatum DSM 4028]
 gi|256579406|gb|ACU90542.1| histone family protein DNA-binding protein [Desulfomicrobium
          baculatum DSM 4028]
          Length = 90

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 55/90 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  ++++ GL++ ++ R +T     + ++ V  + + ++ F TF V+++ +R G
Sbjct: 1  MTKAELVAKMAEKAGLTKANAERALTEFLKAVQETLVTEKKMTLTGFGTFVVEERQARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E+KI   +VV F+    LK  I 
Sbjct: 61 RNPRTGEELKIPACKVVKFRPGKELKDAIK 90


>gi|302669370|ref|YP_003832520.1| DNA-binding protein [Butyrivibrio proteoclasticus B316]
 gi|302397034|gb|ADL35938.1| DNA-binding protein [Butyrivibrio proteoclasticus B316]
          Length = 94

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 48/94 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+KE GLS+KDS + V      +     +   +++  F TF   ++ +R G
Sbjct: 1  MNKTELVDAIAKETGLSKKDSEKAVKAFTEAVSKELKKKGKVQLVGFGTFETAKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          +N QT   +KI    V  FKA   LK  +    +
Sbjct: 61 KNPQTGAAIKIPAATVPKFKAGKALKDAVNGKKK 94


>gi|282896625|ref|ZP_06304640.1| Histone-like protein DNA-binding protein [Raphidiopsis brookii
          D9]
 gi|281198495|gb|EFA73381.1| Histone-like protein DNA-binding protein [Raphidiopsis brookii
          D9]
          Length = 94

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV ++S++  +++K +   ++   + I ++   G+ + +  F +F  + + +R G
Sbjct: 1  MNKAELVDAVSEKASVTKKQADAVISAAIDTIIEAVASGDKVTLVGFGSFESRDRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +TN++++I   +V  F A  + ++++ 
Sbjct: 61 RNPKTNEKMEIPATKVPAFSAGKLFREKVA 90


>gi|206895738|ref|YP_002246738.1| DNA-binding protein HU [Coprothermobacter proteolyticus DSM 5265]
 gi|206738355|gb|ACI17433.1| DNA-binding protein HU [Coprothermobacter proteolyticus DSM 5265]
          Length = 87

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 49/87 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +LV ++++  G+ +KD+  F+    + + ++   GE + +  F  F ++++ +R G
Sbjct: 1  MTKPELVDALAERTGMKKKDAELFLNAFMDVVTETVKSGEPVVLVGFGKFMLRERKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
           N +T + + I  ++ VVFK    L+ 
Sbjct: 61 VNPKTREPIDIPAKKTVVFKPGKELRD 87


>gi|300716083|ref|YP_003740886.1| Integration host factor beta-subunit (IHF-beta) [Erwinia
          billingiae Eb661]
 gi|299061919|emb|CAX59035.1| Integration host factor beta-subunit (IHF-beta) [Erwinia
          billingiae Eb661]
          Length = 94

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ +   +  K     V  +   +  +  +GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLAGQHSHIPAKVVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91


>gi|298368833|ref|ZP_06980151.1| DNA-binding protein HU-beta [Neisseria sp. oral taxon 014 str.
          F0314]
 gi|298282836|gb|EFI24323.1| DNA-binding protein HU-beta [Neisseria sp. oral taxon 014 str.
          F0314]
          Length = 89

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I++E G+S+  + + +    N + ++   G+ + +  F TF+V ++  R G
Sbjct: 1  MNKSELIEAIAQEAGISKAAAAKALDATTNAVTNALKNGDTVTLVGFGTFYVGERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T   + I   +   F+A   LK  +
Sbjct: 61 RNPKTGAPLTIAAAKTPKFRAGKALKDAL 89


>gi|317133959|ref|YP_004089870.1| histone family protein DNA-binding protein [Ruminococcus albus 7]
 gi|315450421|gb|ADU23984.1| histone family protein DNA-binding protein [Ruminococcus albus 7]
          Length = 96

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 53/96 (55%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L+  I+++ G ++K++ + +TT+ + I  +   GE + +  F TF V+++ ++V 
Sbjct: 1   MNKAELINVIAEKGGYTKKEADKVLTTVLDTIAGALENGEKVTLVGFGTFEVRERAAKVA 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
            N  T   V +  R+V  FKA   LK+ +      +
Sbjct: 61  LNPVTKAPVDVPARKVPAFKAGQALKEAVAKAKNKK 96


>gi|87303118|ref|ZP_01085916.1| DNA binding protein HU [Synechococcus sp. WH 5701]
 gi|87282285|gb|EAQ74245.1| DNA binding protein HU [Synechococcus sp. WH 5701]
          Length = 91

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++    L++ + ++ V      I DS V G+ + I  F +F  +++ +R G
Sbjct: 1  MNKADLVNLVAVRTELTKTEVSKVVDAAIETIVDSVVEGKKVSILGFGSFEARERSARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N +T +++KI  +RV  F A    K ++ 
Sbjct: 61 LNPKTGEKIKIPAKRVPAFTAGKQFKDKVQ 90


>gi|209965676|ref|YP_002298591.1| DNA-binding protein HupB [Rhodospirillum centenum SW]
 gi|209959142|gb|ACI99778.1| DNA-binding protein HupB [Rhodospirillum centenum SW]
          Length = 91

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL +++++  G S+  + + V  +F+ I  +  +GE ++++ F TF V ++ +R G
Sbjct: 1  MQKADLAEAVAQATGASKAAAAKTVDAIFDAIQQALAKGEDVRLTGFGTFSVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT   ++I   +   F A   LK  +  
Sbjct: 61 RNPQTGATIQIAASKQPKFTAGKALKDAVNG 91


>gi|329902901|ref|ZP_08273299.1| DNA-binding protein HU [Oxalobacteraceae bacterium IMCC9480]
 gi|327548565|gb|EGF33226.1| DNA-binding protein HU [Oxalobacteraceae bacterium IMCC9480]
          Length = 91

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+ +  L +  + R + ++ + +  + V G+++++  F  F    +  R G
Sbjct: 1  MNKTELIDAIAADCDLPKTVAQRALESILSNVIQAVVNGDSVQLIGFGAFASGSRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T +E+KI   + V F A    K  +  
Sbjct: 61 RNPRTGEEIKIAAAKTVKFSAGKAFKDAVNK 91


>gi|120598786|ref|YP_963360.1| integration host factor subunit beta [Shewanella sp. W3-18-1]
 gi|146293137|ref|YP_001183561.1| integration host factor subunit beta [Shewanella putrefaciens
          CN-32]
 gi|166975891|sp|A4Y729|IHFB_SHEPC RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|166975893|sp|A1RJG1|IHFB_SHESW RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|120558879|gb|ABM24806.1| integration host factor, beta subunit [Shewanella sp. W3-18-1]
 gi|145564827|gb|ABP75762.1| integration host factor, beta subunit [Shewanella putrefaciens
          CN-32]
 gi|319426351|gb|ADV54425.1| integration host factor, beta subunit [Shewanella putrefaciens
          200]
          Length = 95

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  LS K+    +  +  ++  +   G+ I+I  F +F +  +  R 
Sbjct: 1  MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLESGDRIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V+++ + V  FK    L++R+
Sbjct: 61 GRNPKTGSSVELEGKYVPHFKPGKELRERV 90


>gi|288817831|ref|YP_003432178.1| histone-like DNA-binding protein HU [Hydrogenobacter thermophilus
          TK-6]
 gi|288787230|dbj|BAI68977.1| histone-like DNA-binding protein HU [Hydrogenobacter thermophilus
          TK-6]
 gi|308751429|gb|ADO44912.1| histone family protein DNA-binding protein [Hydrogenobacter
          thermophilus TK-6]
          Length = 90

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV +++K  G+++K +   + +  + I  S  +GE + I  F  F V+++ +R G
Sbjct: 1  MTKAELVSAVAKGAGITKKQADAALKSAISAIAGSLKKGERVAIPGFGIFTVRKRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   + I  R+VV F+ +  L++ I 
Sbjct: 61 RNPRTGAVINIPARKVVTFRPAKDLRESIK 90


>gi|213968551|ref|ZP_03396694.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
          T1]
 gi|301383523|ref|ZP_07231941.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
          Max13]
 gi|302062573|ref|ZP_07254114.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
          K40]
 gi|302130240|ref|ZP_07256230.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
          NCPPB 1108]
 gi|213926839|gb|EEB60391.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
          T1]
 gi|330967966|gb|EGH68226.1| DNA-binding protein HU family [Pseudomonas syringae pv.
          actinidiae str. M302091]
 gi|331017834|gb|EGH97890.1| DNA-binding protein HU family [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
          Length = 91

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + D+  +I+++  L+++ S R +  +  EI  +  R +++ +  F TF  + +G+R G
Sbjct: 1  MRKPDVAAAIAEKADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT + VKI     V FK    LK  + 
Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKALKDSVN 90


>gi|170693720|ref|ZP_02884878.1| integration host factor, beta subunit [Burkholderia graminis C4D1M]
 gi|209519345|ref|ZP_03268144.1| integration host factor, beta subunit [Burkholderia sp. H160]
 gi|295677276|ref|YP_003605800.1| integration host factor, beta subunit [Burkholderia sp. CCGE1002]
 gi|307730619|ref|YP_003907843.1| integration host factor subunit beta [Burkholderia sp. CCGE1003]
 gi|323526953|ref|YP_004229106.1| integration host factor subunit beta [Burkholderia sp. CCGE1001]
 gi|170141502|gb|EDT09672.1| integration host factor, beta subunit [Burkholderia graminis C4D1M]
 gi|209500229|gb|EEA00286.1| integration host factor, beta subunit [Burkholderia sp. H160]
 gi|295437119|gb|ADG16289.1| integration host factor, beta subunit [Burkholderia sp. CCGE1002]
 gi|307585154|gb|ADN58552.1| integration host factor, beta subunit [Burkholderia sp. CCGE1003]
 gi|323383955|gb|ADX56046.1| integration host factor, beta subunit [Burkholderia sp. CCGE1001]
          Length = 107

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 2/104 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+LV  ++  F  L  KD+   V T+ + + ++  +G  I+I  F +F + ++ SRV
Sbjct: 1   MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSEALAKGHRIEIRGFGSFGLNRRPSRV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           GRN ++ ++V +  + V  FK    L++R+ D   G     ++ 
Sbjct: 61  GRNPKSGEKVLVPEKYVPHFKPGKELRERV-DRRAGEPLKAEEP 103


>gi|10955165|ref|NP_059821.1| hypothetical protein pTi_149 [Agrobacterium tumefaciens]
 gi|61226436|sp|P0A3I1|IHFB_AGRTU RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|61226439|sp|P0A3I2|IHFB_AGRT9 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|2773264|gb|AAC72021.1| ysa [Agrobacterium tumefaciens]
 gi|11124690|emb|CAC15177.1| IHF beta subunit-like protein [Agrobacterium tumefaciens]
          Length = 102

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV  ++ +   L R+D+   V  + +EI  +  RGE + I SF TF V+ + +R 
Sbjct: 1  MIKSELVDFVAAKNPYLHRRDAENAVDAVLDEITGALERGERVDIRSFGTFVVRHRPARS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN      V I+ + V  F+A   ++ R+    +
Sbjct: 61 GRNPLNGNAVFIEEKWVPFFRAGKEIRDRLNTAEK 95


>gi|50121514|ref|YP_050681.1| integration host factor subunit beta [Pectobacterium atrosepticum
          SCRI1043]
 gi|227111987|ref|ZP_03825643.1| integration host factor subunit beta [Pectobacterium carotovorum
          subsp. brasiliensis PBR1692]
 gi|227328154|ref|ZP_03832178.1| integration host factor subunit beta [Pectobacterium carotovorum
          subsp. carotovorum WPP14]
 gi|253688123|ref|YP_003017313.1| integration host factor, beta subunit [Pectobacterium carotovorum
          subsp. carotovorum PC1]
 gi|261821284|ref|YP_003259390.1| integration host factor subunit beta [Pectobacterium wasabiae
          WPP163]
 gi|81693226|sp|Q6D404|IHFB_ERWCT RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|259492036|sp|C6DF68|IHFB_PECCP RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|49612040|emb|CAG75489.1| integration host factor beta-subunit [Pectobacterium atrosepticum
          SCRI1043]
 gi|251754701|gb|ACT12777.1| integration host factor, beta subunit [Pectobacterium carotovorum
          subsp. carotovorum PC1]
 gi|261605297|gb|ACX87783.1| integration host factor, beta subunit [Pectobacterium wasabiae
          WPP163]
          Length = 94

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +  ++  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLAGQQSHIPAKVVEDAVKEMLEQMASTLAEGDRIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91


>gi|295105343|emb|CBL02887.1| Bacterial nucleoid DNA-binding protein [Faecalibacterium
          prausnitzii SL3/3]
          Length = 89

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 48/87 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DL+  ++    +S+K + + V+ +F  +  +   GE I IS F TF V+++  R G
Sbjct: 1  MTKTDLIAQVAANTEMSKKSAEQAVSAVFEALGKAMTEGEKITISGFGTFEVRERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
           N +T + + I   R +VFK    LK 
Sbjct: 61 INPRTREPITIAASRSIVFKPGKSLKD 87


>gi|255011460|ref|ZP_05283586.1| putative histone-like DNA-binding protein HU3 [Bacteroides
          fragilis 3_1_12]
 gi|313149278|ref|ZP_07811471.1| DNA-binding protein HU-beta [Bacteroides fragilis 3_1_12]
 gi|313138045|gb|EFR55405.1| DNA-binding protein HU-beta [Bacteroides fragilis 3_1_12]
          Length = 90

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ E GLS+ DS + +   F+ +  +   G+ I +  F TF V ++  R G
Sbjct: 1  MNKAELINAMAAESGLSKVDSKKALEAFFSSVTKALSAGDKISLVGFGTFSVAERAERSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T + + I  ++V  FK  + L   I 
Sbjct: 61 INPSTKKAIIIPAKKVAKFKPGAELADAIK 90


>gi|293396770|ref|ZP_06641046.1| integration host factor subunit beta [Serratia odorifera DSM
          4582]
 gi|291421034|gb|EFE94287.1| integration host factor subunit beta [Serratia odorifera DSM
          4582]
          Length = 94

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +   GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLAGQQSHIPAKAVEDAVKEMLEHMAATLADGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V +D + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVDLDGKYVPHFKPGKELRDRAN 91


>gi|323526327|ref|YP_004228480.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1001]
 gi|323383329|gb|ADX55420.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1001]
          Length = 94

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 45/94 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++   G S+  +   +  +   I ++ V+G+ +++  F +F    + +R G
Sbjct: 1  MNKQELIDAVASATGSSKSIAGEAIDAVIGAITEAVVKGDTVQLIGFGSFSQGTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN  T +E+ I   + V F A    K  +    R
Sbjct: 61 RNPATGEEISIAAAKTVKFTAGKGFKDAVNGGAR 94


>gi|254412658|ref|ZP_05026431.1| DNA-binding protein HU [Microcoleus chthonoplastes PCC 7420]
 gi|196180393|gb|EDX75384.1| DNA-binding protein HU [Microcoleus chthonoplastes PCC 7420]
          Length = 94

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV  ++++  +++K +   +T     I ++   G+ + +  F +F  +++ +R G
Sbjct: 2  MNKGELVDKVAEKAAVTKKQADAVLTAALESIMEAVSEGDKVTLVGFGSFESRERKAREG 61

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  +++I   +V  F A  + K+++ 
Sbjct: 62 RNPKTGDKMEIPATKVPAFSAGKLFKEQVA 91


>gi|319954832|ref|YP_004166099.1| histone family protein DNA-binding protein [Cellulophaga algicola
          DSM 14237]
 gi|319423492|gb|ADV50601.1| histone family protein DNA-binding protein [Cellulophaga algicola
          DSM 14237]
          Length = 90

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ + G+++  + + + +    +  S  +G+ + +  F ++ V ++ +R G
Sbjct: 1  MNKTELIDAMAADAGITKAAAKKALESFLGNVEGSLKKGDRVSLVGFGSWSVSKREARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   +KI  + VV FKA + L K + 
Sbjct: 61 RNPQTGATIKIAAKNVVKFKAGAELAKAVN 90


>gi|32491258|ref|NP_871512.1| hypothetical protein WGLp509 [Wigglesworthia glossinidia
          endosymbiont of Glossina brevipalpis]
 gi|25166465|dbj|BAC24655.1| hupA [Wigglesworthia glossinidia endosymbiont of Glossina
          brevipalpis]
          Length = 90

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +  + I +S   G A+++  F TF + ++ +R G
Sbjct: 1  MNKTQLIDVIANKAELSKIKARAALESTLDAITNSLKEGNAVQLIGFGTFKINRRNARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI    V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIAATNVPTFVSGKALKAAVK 90


>gi|186477811|ref|YP_001859281.1| histone family protein DNA-binding protein [Burkholderia phymatum
          STM815]
 gi|184194270|gb|ACC72235.1| histone family protein DNA-binding protein [Burkholderia phymatum
          STM815]
          Length = 92

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++ + G S+  +   + TL   I  +  +G+A+++  F +F   ++ +R G
Sbjct: 1  MNKQELIDAVAGQTGASKAQTGETLDTLLEVIKKAVAKGDAVQLIGFGSFGSGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + +KI   + V F A    K  +  
Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFKDAVNK 91


>gi|322832233|ref|YP_004212260.1| integration host factor, subunit beta [Rahnella sp. Y9602]
 gi|321167434|gb|ADW73133.1| integration host factor, beta subunit [Rahnella sp. Y9602]
          Length = 94

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ +   +  K     V  +   +  +   GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLAGQHSHIPAKAVEDAVKEMLEHMAATLADGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V++D + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRAN 91


>gi|34811460|pdb|1OUZ|B Chain B, Crystal Structure Of A Mutant Ihf (Betae44a) Complexed
          With A Variant H' Site (T44a)
 gi|34811465|pdb|1OWF|B Chain B, Crystal Structure Of A Mutant Ihf (Betae44a) Complexed
          With The Native H' Site
          Length = 94

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +  +GE I I  F +F +  +  R 
Sbjct: 1  MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIAIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91


>gi|127512883|ref|YP_001094080.1| integration host factor, beta subunit [Shewanella loihica PV-4]
 gi|166975890|sp|A3QEC3|IHFB_SHELP RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|126638178|gb|ABO23821.1| integration host factor, beta subunit [Shewanella loihica PV-4]
          Length = 95

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  LS K+    +  +  ++  +   G+ I+I  F +F +  +  R 
Sbjct: 1  MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLEGGDRIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V+++ + V  FK    L++R+
Sbjct: 61 GRNPKTGTSVELEGKYVPHFKPGKELRERV 90


>gi|197119620|ref|YP_002140047.1| integration host factor subunit beta [Geobacter bemidjiensis Bem]
 gi|253699630|ref|YP_003020819.1| histone family protein DNA-binding protein [Geobacter sp. M21]
 gi|197088980|gb|ACH40251.1| integration host factor, beta subunit [Geobacter bemidjiensis
          Bem]
 gi|251774480|gb|ACT17061.1| histone family protein DNA-binding protein [Geobacter sp. M21]
          Length = 93

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  + +  G L+RKDS   V+ +F+ + ++   G+ ++I  F +F ++ +  R 
Sbjct: 1  MTKSELIDKLVEVRGVLTRKDSEAVVSMVFDAMSEALTNGDKVEIRGFGSFTIRDREPRE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN ++ + V I  ++   FK    L++R+ +
Sbjct: 61 ARNPKSGEIVSIPSKKTPFFKTGKDLRERVNN 92


>gi|17231427|ref|NP_487975.1| DNA binding protein HU [Nostoc sp. PCC 7120]
 gi|75907988|ref|YP_322284.1| nucleoid protein Hbs [Anabaena variabilis ATCC 29413]
 gi|186685101|ref|YP_001868297.1| histone family protein DNA-binding protein [Nostoc punctiforme
          PCC 73102]
 gi|2506517|sp|P05514|DBH_ANASP RecName: Full=DNA-binding protein HU
 gi|31615985|pdb|1P51|A Chain A, Anabaena Hu-Dna Cocrystal Structure (Ahu6)
 gi|31615986|pdb|1P51|B Chain B, Anabaena Hu-Dna Cocrystal Structure (Ahu6)
 gi|31615987|pdb|1P51|C Chain C, Anabaena Hu-Dna Cocrystal Structure (Ahu6)
 gi|31615988|pdb|1P51|D Chain D, Anabaena Hu-Dna Cocrystal Structure (Ahu6)
 gi|31615997|pdb|1P71|A Chain A, Anabaena Hu-Dna Corcrystal Structure (Tr3)
 gi|31615998|pdb|1P71|B Chain B, Anabaena Hu-Dna Corcrystal Structure (Tr3)
 gi|31616001|pdb|1P78|A Chain A, Anabaena Hu-Dna Cocrystal Structure (Ahu2)
 gi|31616002|pdb|1P78|B Chain B, Anabaena Hu-Dna Cocrystal Structure (Ahu2)
 gi|1408581|gb|AAB06445.1|AAB06445 HU protein [Nostoc sp. PCC 7120]
 gi|998920|gb|AAB34352.1| HU [Anabaena]
 gi|17133069|dbj|BAB75634.1| DNA binding protein HU [Nostoc sp. PCC 7120]
 gi|75701713|gb|ABA21389.1| bacterial nucleoid protein Hbs [Anabaena variabilis ATCC 29413]
 gi|186467553|gb|ACC83354.1| histone family protein DNA-binding protein [Nostoc punctiforme
          PCC 73102]
          Length = 94

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +++++  +++K +   +T     I ++   G+ + +  F +F  +++ +R G
Sbjct: 1  MNKGELVDAVAEKASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +TN++++I   RV  F A  + ++++ 
Sbjct: 61 RNPKTNEKMEIPATRVPAFSAGKLFREKVA 90


>gi|120556663|ref|YP_961014.1| histone family protein DNA-binding protein [Marinobacter
          aquaeolei VT8]
 gi|120326512|gb|ABM20827.1| histone family protein DNA-binding protein [Marinobacter
          aquaeolei VT8]
          Length = 90

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L  +I+ + GL+R+ +   +    +++  +A RGE + +  F TF+++ + +R G
Sbjct: 1  MRKPELAAAIADKTGLTREKAGEVINAFTDQVSAAAARGEDVTLIGFGTFNIRSREARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I   + V FKA   LK  I
Sbjct: 61 RNPQTGASIQIPASKTVGFKAGKALKDAI 89


>gi|258592137|emb|CBE68442.1| DNA-binding protein HU (DNA-binding protein II) (HB) [NC10
          bacterium 'Dutch sediment']
          Length = 93

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+   +++  GL++K +   V    + + ++  +GE I++  F +F VK K +R G
Sbjct: 1  MTKADIASIVAER-GLAKKQAMEAVEATLDIVKNALKKGEKIQLVGFGSFQVKAKRARKG 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT   + I  R+V+ FK    L   + +
Sbjct: 60 RNPQTGDPITISARKVLKFKPGKALHLAVNN 90


>gi|284928746|ref|YP_003421268.1| nucleoid DNA-binding protein [cyanobacterium UCYN-A]
 gi|284809205|gb|ADB94910.1| bacterial nucleoid DNA-binding protein [cyanobacterium UCYN-A]
          Length = 93

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 49/93 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLV +I+ +  L++K++++ +  L + I ++   G  + +  F TF  + +  R G
Sbjct: 1  MNKEDLVNTIAAKTRLTKKETSQILDALTSTIMETVASGNKVVLVGFGTFEPRDRKERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           N QT Q + I    V  F A  + K ++++ M
Sbjct: 61 MNPQTGQPITIPATTVPAFSAGKVFKGKVVESM 93


>gi|163788099|ref|ZP_02182545.1| keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate
          aldolase [Flavobacteriales bacterium ALC-1]
 gi|159876419|gb|EDP70477.1| keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate
          aldolase [Flavobacteriales bacterium ALC-1]
          Length = 90

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  +++  G+++  + + + +L  +I  S  +G  + +  F ++ V ++ +R G
Sbjct: 1  MNKTDLINGMAENAGITKAAAKKALDSLLVDIEGSLQKGNRVSLVGFGSWSVSRRAARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI  + VV FKA S L   + 
Sbjct: 61 RNPQTGKTIKIKAKNVVKFKAGSDLSSAVN 90


>gi|328949956|ref|YP_004367291.1| histone family protein DNA-binding protein [Marinithermus
          hydrothermalis DSM 14884]
 gi|328450280|gb|AEB11181.1| histone family protein DNA-binding protein [Marinithermus
          hydrothermalis DSM 14884]
          Length = 97

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 51/92 (55%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+T++DLV  +++  GL +KD    V    +E+ D   R   ++++ F TF V+++ +R
Sbjct: 5  KTVTKADLVNHVAETTGLKKKDVKAVVDAFLSEVADMLDRDYKVQLTGFGTFEVRKRKAR 64

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           G    T +++KI   +   FK    LK+++ 
Sbjct: 65 TGVKPGTTEKIKIPASKYPAFKPGKALKEKVK 96


>gi|320353405|ref|YP_004194744.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
 gi|320121907|gb|ADW17453.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
          Length = 94

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++KE  LS+  + + V ++F+ I ++   G+ + ++ F TF    + +R G
Sbjct: 1  MNKTELIDKVAKESALSKSAAEQVVNSVFSAIAEAMKTGDKVTLAGFGTFSTADRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN Q+ +++ I  ++ V FK  S L   I 
Sbjct: 61 RNPQSGEKIAIPAKKAVKFKPGSKLVDVIQ 90


>gi|158340425|ref|YP_001521781.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
 gi|158310666|gb|ABW32280.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
          Length = 91

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +I++  G+++K +   ++     I D+   GE + +  F +F  + + +R G
Sbjct: 1  MNKGELVDAIAENTGVTKKQADTTLSATIETIVDAVSSGEKVTLVGFGSFEARDRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +++     +  VF A  + K+++ 
Sbjct: 61 RNPKTGEKMTTPASKAPVFSAGKLFKEKVK 90


>gi|225011859|ref|ZP_03702297.1| histone family protein DNA-binding protein [Flavobacteria
          bacterium MS024-2A]
 gi|225004362|gb|EEG42334.1| histone family protein DNA-binding protein [Flavobacteria
          bacterium MS024-2A]
          Length = 90

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ + G+S+  + + + +    +  +  +G  + +  F ++ V ++ +R G
Sbjct: 1  MNKTELIDAMAADAGISKAAAKKALESFLGSVGGTLKKGGRVSLVGFGSWSVSKRAARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   +KI  + VV FKA + L   + 
Sbjct: 61 RNPQTGATIKIAAKNVVKFKAGAELSGSVN 90


>gi|167855104|ref|ZP_02477876.1| hypothetical protein HPS_06734 [Haemophilus parasuis 29755]
 gi|219870700|ref|YP_002475075.1| integration host factor subunit beta [Haemophilus parasuis
          SH0165]
 gi|254803535|sp|B8F475|IHFB_HAEPS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|167853739|gb|EDS24981.1| hypothetical protein HPS_06734 [Haemophilus parasuis 29755]
 gi|219690904|gb|ACL32127.1| integration host factor, beta subunit/bacterial nucleoid
          DNA-binding protein [Haemophilus parasuis SH0165]
          Length = 93

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ ++  ++  LS K     V  +  +I  S  +GE I++  F +F +  +  RV
Sbjct: 1  MTKSELIANLVAQYPSLSVKSVDESVKEILEQIMGSLEQGERIEVRGFGSFSLHYRQPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + VK+D + V  FKA   LK+R+
Sbjct: 61 GRNPKTGESVKLDAKYVPHFKAGKELKERV 90


>gi|154246162|ref|YP_001417120.1| integration host factor subunit beta [Xanthobacter autotrophicus
          Py2]
 gi|226709820|sp|A7IHH0|IHFB_XANP2 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|154160247|gb|ABS67463.1| integration host factor, beta subunit [Xanthobacter autotrophicus
          Py2]
          Length = 94

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D    V  +  ++  +  RG+ +++  F  F VK++ +RV
Sbjct: 1  MIKSELVQKIAEANPHLYQRDVENIVNAILEQVASALERGDRVELRGFGAFSVKKRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T ++V +  + V  FK    +++R+ 
Sbjct: 61 GRNPRTGKQVDVSEKTVPYFKTGKEMRERLN 91


>gi|325578218|ref|ZP_08148353.1| integration host factor beta subunit [Haemophilus parainfluenzae
          ATCC 33392]
 gi|301156124|emb|CBW15595.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Haemophilus parainfluenzae T3T1]
 gi|325159954|gb|EGC72083.1| integration host factor beta subunit [Haemophilus parainfluenzae
          ATCC 33392]
          Length = 94

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++++S +   LS K+    V  +   I  S   G  I++  F +F +  +  RV
Sbjct: 1  MTKSELIENLSTKHPTLSAKEVEGIVKDILELIAQSLEEGNRIEVRGFGSFSLHHRQPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T   VK+D + V  FKA   LK R+ 
Sbjct: 61 GRNPKTGDSVKLDAKSVPHFKAGKELKDRVN 91


>gi|309787032|ref|ZP_07681644.1| DNA-binding protein HU-beta [Shigella dysenteriae 1617]
 gi|308924610|gb|EFP70105.1| DNA-binding protein HU-beta [Shigella dysenteriae 1617]
 gi|332760731|gb|EGJ91019.1| DNA-binding protein HU-beta [Shigella flexneri 4343-70]
 gi|332768362|gb|EGJ98546.1| DNA-binding protein HU-&beta, NS1 [Shigella flexneri 2930-71]
          Length = 85

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 44/85 (51%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          ++  I+    +S+  + R +  +   + +S   G+ + +  F TF VK++ +R GRN QT
Sbjct: 1  MIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQT 60

Query: 70 NQEVKIDPRRVVVFKASSILKKRIM 94
           +E+ I   +V  F+A   LK  + 
Sbjct: 61 GKEITIAAAKVPSFRAGKALKDAVN 85


>gi|71737446|ref|YP_277186.1| HU family DNA-binding protein [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|257485720|ref|ZP_05639761.1| HU family DNA-binding protein [Pseudomonas syringae pv. tabaci
          ATCC 11528]
 gi|298489413|ref|ZP_07007424.1| DNA-binding protein HU-alpha [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|71557999|gb|AAZ37210.1| DNA-binding protein HU family [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|298155987|gb|EFH97096.1| DNA-binding protein HU-alpha [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|320321727|gb|EFW77825.1| HU family DNA-binding protein [Pseudomonas syringae pv. glycinea
          str. B076]
 gi|320331477|gb|EFW87417.1| HU family DNA-binding protein [Pseudomonas syringae pv. glycinea
          str. race 4]
 gi|330880920|gb|EGH15069.1| HU family DNA-binding protein [Pseudomonas syringae pv. glycinea
          str. race 4]
 gi|330890628|gb|EGH23289.1| HU family DNA-binding protein [Pseudomonas syringae pv. mori str.
          301020]
 gi|330986904|gb|EGH85007.1| HU family DNA-binding protein [Pseudomonas syringae pv.
          lachrymans str. M301315]
 gi|331012004|gb|EGH92060.1| HU family DNA-binding protein [Pseudomonas syringae pv. tabaci
          ATCC 11528]
          Length = 91

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + ++  +I+++  L+++ S R +  +  EI  +  R +++ +  F TF  + +G+R G
Sbjct: 1  MRKPEVAAAIAEKADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT + VKI     V FK    LK  + 
Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKALKDSVN 90


>gi|310657656|ref|YP_003935377.1| hu, DNA-binding transcriptional regulator subunit beta
          [Clostridium sticklandii DSM 519]
 gi|308824434|emb|CBH20472.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Clostridium sticklandii]
          Length = 102

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  ++++ G+++KD+   + +    + ++ V GE +++  F TF  +++ +R G
Sbjct: 1  MNKAELVAKMAEKSGMTKKDTEVALNSFMASVEEALVAGEKVQLVGFGTFETRERAAREG 60

Query: 65 RNLQTNQ-EVKIDPRRVVVFKASSILKKRIM 94
          RN +  + ++KI   +  VFKA   LK+++ 
Sbjct: 61 RNPRDPEKKIKIPASKAPVFKAGKGLKEKVN 91


>gi|291615208|ref|YP_003525365.1| histone family protein DNA-binding protein [Sideroxydans
          lithotrophicus ES-1]
 gi|291585320|gb|ADE12978.1| histone family protein DNA-binding protein [Sideroxydans
          lithotrophicus ES-1]
          Length = 94

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 50/94 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +L+ +++ + G S+ D+ R +  L + +  +  +G+ + +  F TF V+++ +R G
Sbjct: 1  MNRKELIDALATKTGSSKADADRNIAALIDIVTATLKKGDNVALVGFGTFEVRKRAARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN  T   +KI   +   FKA + LK  +    +
Sbjct: 61 RNPSTGAAIKIKASKQPAFKAGATLKAAVNGGKK 94


>gi|302878113|ref|YP_003846677.1| histone family protein DNA-binding protein [Gallionella
          capsiferriformans ES-2]
 gi|302580902|gb|ADL54913.1| histone family protein DNA-binding protein [Gallionella
          capsiferriformans ES-2]
          Length = 93

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 48/92 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +L+ +++ + G ++ ++ R +      + ++   G+ I +  F TF V+++ +R G
Sbjct: 1  MNRKELIDALAAKTGSTKTEAERNIAAFIEVVTETLAAGDDIALVGFGTFEVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN  T  E+KI   +   FKA + LK  +   
Sbjct: 61 RNPATGAELKIAASKQAAFKAGATLKAAVNGS 92


>gi|269792401|ref|YP_003317305.1| histone family protein DNA-binding protein [Thermanaerovibrio
          acidaminovorans DSM 6589]
 gi|269100036|gb|ACZ19023.1| histone family protein DNA-binding protein [Thermanaerovibrio
          acidaminovorans DSM 6589]
          Length = 93

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 55/92 (59%), Gaps = 2/92 (2%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T++DLV  + K    +S+K ++  V  +FN I ++ V+G+ +++  F TF V+++ +R 
Sbjct: 1  MTKADLVNELVKSVEDISKKKASEAVDAIFNIIQEALVKGDKVQLVGFGTFEVQERAARQ 60

Query: 64 GRNLQ-TNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN Q   + ++I  ++  VF+A   LK  + 
Sbjct: 61 GRNPQDPTKTIEIPAKKAPVFRAGKSLKDAVN 92


>gi|224537593|ref|ZP_03678132.1| hypothetical protein BACCELL_02473 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224520790|gb|EEF89895.1| hypothetical protein BACCELL_02473 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 90

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 45/85 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++ E GL++ DS + +      I  +   G+ + +  F TF V ++ +R+G
Sbjct: 1  MNKSELINAMAAESGLTKTDSKKALDAFMAAITKALKAGDKVSLVGFGTFVVAERAARLG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N  T Q + I  +RV  FK    L
Sbjct: 61 INPSTKQSITIPAKRVAKFKPGMEL 85


>gi|328912279|gb|AEB63875.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Bacillus
          amyloliquefaciens LL3]
          Length = 91

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 57/90 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + + V +++ E G+++K++T  V  +F  + ++  +GE+IKI    TF V+++ +R G
Sbjct: 1  MNKIEFVGAVANELGVTKKEATPNVEGVFKVLSETLAKGESIKIPGVGTFEVRERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN+QT +E++I   +VV FK +  LK  + 
Sbjct: 61 RNIQTGEEIEIPASKVVKFKPAKALKDAVK 90


>gi|257439404|ref|ZP_05615159.1| DNA-binding protein HU [Faecalibacterium prausnitzii A2-165]
 gi|257198279|gb|EEU96563.1| DNA-binding protein HU [Faecalibacterium prausnitzii A2-165]
          Length = 89

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 46/87 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DL+  ++    +S+K +   V   F+ +  +   GE I IS F TF ++++  R G
Sbjct: 1  MTKTDLIAQVAANTEMSKKSAELAVNAAFDALSKAMAEGEKITISGFGTFEIRERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
           N +T + + I   + +VFK    LK 
Sbjct: 61 INPRTREPITIAASKSIVFKPGKALKD 87


>gi|146297905|ref|YP_001192496.1| histone family protein DNA-binding protein [Flavobacterium
          johnsoniae UW101]
 gi|146152323|gb|ABQ03177.1| histone family protein DNA-binding protein [Flavobacterium
          johnsoniae UW101]
          Length = 90

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+ + G+++  +   + +    +  +  +G  I +  F ++ V  + +R G
Sbjct: 1  MNKSELIDAIAADAGITKAAAKLALESFLGNVGTTLKKGGRISLVGFGSWSVSARAARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI  + VV FKA + L+  + 
Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGAELEGAVN 90


>gi|253999167|ref|YP_003051230.1| histone family protein DNA-binding protein [Methylovorus sp.
          SIP3-4]
 gi|313201269|ref|YP_004039927.1| histone family protein DNA-binding protein [Methylovorus sp.
          MP688]
 gi|253985846|gb|ACT50703.1| histone family protein DNA-binding protein [Methylovorus sp.
          SIP3-4]
 gi|312440585|gb|ADQ84691.1| histone family protein DNA-binding protein [Methylovorus sp.
          MP688]
          Length = 90

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  I+K  G+S+  + R +      +  +  +G+ + +  F +F+V ++ +R G
Sbjct: 1  MNKSELIDEIAKAAGISKAAAGRSLDATTAAVTKALKKGDIVTLIGFGSFYVGKRAARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI       F+A   LK  + 
Sbjct: 61 RNPRTGTTIKIKAANSPKFRAGKALKDAVN 90


>gi|258545129|ref|ZP_05705363.1| integration host factor subunit beta [Cardiobacterium hominis
          ATCC 15826]
 gi|258519648|gb|EEV88507.1| integration host factor subunit beta [Cardiobacterium hominis
          ATCC 15826]
          Length = 96

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  +   +  L  +D    V  +  ++C S  +G+ ++I  F +F +  + +R 
Sbjct: 1  MTKSELIDRLCMRYPQLRSQDVEEAVKLIIEKVCQSLEKGDRVEIRGFGSFSLHYREART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T   V++  + +  F+A   L++R+  +
Sbjct: 61 GRNPKTGDSVEVPSKSIPYFRAGKELRERVDQN 93


>gi|224369772|ref|YP_002603936.1| IhfB [Desulfobacterium autotrophicum HRM2]
 gi|223692489|gb|ACN15772.1| IhfB [Desulfobacterium autotrophicum HRM2]
          Length = 91

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  + +   L++ ++   V   F+ + ++    E ++I    +F +K+  S  G
Sbjct: 1  MNKLELISVLKQRADLTKTEAAEIVEIFFDSLTEALANDERVEIRGLCSFFIKEYKSYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T  +V I  +++  FK    LK+R+
Sbjct: 61 RNPKTGAKVTIPAKKLPFFKCGKELKERV 89


>gi|149928275|ref|ZP_01916518.1| Integration host factor, beta subunit [Limnobacter sp. MED105]
 gi|149823004|gb|EDM82246.1| Integration host factor, beta subunit [Limnobacter sp. MED105]
          Length = 98

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  + K F  L  +D+   V ++ + +  +   G+ I+I  F +F + ++  RV
Sbjct: 1  MTKSELINQLVKRFPKLPVRDTDFAVKSILDSMTQALAEGQRIEIRGFGSFSLTRRPQRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V +  +RV  FK    L++R+
Sbjct: 61 GRNPKSGEQVVVPEKRVPHFKPGKELRERV 90


>gi|91785774|ref|YP_560980.1| DNA-binding protein HU-alpha [Burkholderia xenovorans LB400]
 gi|170694282|ref|ZP_02885436.1| histone family protein DNA-binding protein [Burkholderia graminis
          C4D1M]
 gi|187925902|ref|YP_001897544.1| histone family protein DNA-binding protein [Burkholderia
          phytofirmans PsJN]
 gi|209515815|ref|ZP_03264678.1| histone family protein DNA-binding protein [Burkholderia sp.
          H160]
 gi|296157574|ref|ZP_06840409.1| histone family protein DNA-binding protein [Burkholderia sp.
          Ch1-1]
 gi|307731496|ref|YP_003908720.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1003]
 gi|323527878|ref|YP_004230031.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1001]
 gi|91689728|gb|ABE32928.1| DNA-binding protein HU-alpha [Burkholderia xenovorans LB400]
 gi|170140705|gb|EDT08879.1| histone family protein DNA-binding protein [Burkholderia graminis
          C4D1M]
 gi|187717096|gb|ACD18320.1| histone family protein DNA-binding protein [Burkholderia
          phytofirmans PsJN]
 gi|209503842|gb|EEA03835.1| histone family protein DNA-binding protein [Burkholderia sp.
          H160]
 gi|295892346|gb|EFG72129.1| histone family protein DNA-binding protein [Burkholderia sp.
          Ch1-1]
 gi|307586031|gb|ADN59429.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1003]
 gi|323384880|gb|ADX56971.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1001]
          Length = 92

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++ + G S+  +   + TL   I  S  +G+A+++  F +F   ++ +R G
Sbjct: 1  MNKQELIDAVAGQTGASKAQTGETLDTLLEVIKKSVSKGDAVQLIGFGSFGSGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + +KI   + V F A    K  +  
Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFKDAVNK 91


>gi|254480378|ref|ZP_05093625.1| DNA-binding protein HU [marine gamma proteobacterium HTCC2148]
 gi|214038961|gb|EEB79621.1| DNA-binding protein HU [marine gamma proteobacterium HTCC2148]
          Length = 91

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+    LS+ D+ R +  + + + D+  +G+ + +  F TF VK + +R G
Sbjct: 1  MNKTELIDAIAAAADLSKADAGRALDAVVDSVTDALKKGDQVSLVGFGTFSVKHRSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   ++I    V  FKA   LK  + 
Sbjct: 61 RNPQTGAAIEIKASEVPSFKAGKALKDAVN 90


>gi|46581376|ref|YP_012184.1| integration host factor subunit beta [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|120601447|ref|YP_965847.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris DP4]
 gi|46450798|gb|AAS97444.1| integration host factor, beta subunit [Desulfovibrio vulgaris
          str. Hildenborough]
 gi|120561676|gb|ABM27420.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris DP4]
 gi|311235034|gb|ADP87888.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris RCH1]
          Length = 91

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LVK +++   +  ++S+  V   F+ + D+ ++G+ ++I  F +F VK      G
Sbjct: 1  MNKSELVKMLAENHEIPAEESSVIVNLFFDSVRDALLQGDRVEIRGFGSFKVKGYRGYKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   V++ P+R+ VF+A   LK+ I 
Sbjct: 61 RNPKTGDNVEVPPKRLPVFRAGKELKEIIN 90


>gi|301156331|emb|CBW15802.1| integration host factor (IHF), DNA-binding protein, alpha subunit
          [Haemophilus parainfluenzae T3T1]
          Length = 99

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 50/92 (54%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+ D+ + +  ++ L + ++   V   F EI  S   G  +K+S F  F ++ K SR 
Sbjct: 3  TITKIDITEYLLDKYQLQKAEAKALVEDFFEEIRLSLESGGEVKLSGFGNFELRNKASRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + + +  RRVV FK    L+ R+ +
Sbjct: 63 GRNPKTGESIPVSARRVVAFKPGQKLRARVEN 94


>gi|322420779|ref|YP_004200002.1| histone family protein DNA-binding protein [Geobacter sp. M18]
 gi|320127166|gb|ADW14726.1| histone family protein DNA-binding protein [Geobacter sp. M18]
          Length = 93

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  + +  G L+RKDS   V+ +F+ + ++   G+ ++I  F +F ++ +  R 
Sbjct: 1  MTKSELIDKLVEVRGALTRKDSEAVVSMVFDAMSEALTNGDKVEIRGFGSFTIRDREPRE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN ++ + V I  ++   FK    L++R+ +
Sbjct: 61 ARNPKSGEIVSIPSKKTPFFKTGKDLRERVNN 92


>gi|24373948|ref|NP_717991.1| integration host factor, beta subunit [Shewanella oneidensis
          MR-1]
 gi|113970263|ref|YP_734056.1| integration host factor subunit beta [Shewanella sp. MR-4]
 gi|114047548|ref|YP_738098.1| integration host factor subunit beta [Shewanella sp. MR-7]
 gi|117920423|ref|YP_869615.1| integration host factor subunit beta [Shewanella sp. ANA-3]
 gi|81744768|sp|Q8EEI1|IHFB_SHEON RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|122944665|sp|Q0HV14|IHFB_SHESR RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|123325047|sp|Q0HIW8|IHFB_SHESM RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|166975892|sp|A0KWP0|IHFB_SHESA RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|24348383|gb|AAN55435.1|AE015680_10 integration host factor, beta subunit [Shewanella oneidensis
          MR-1]
 gi|113884947|gb|ABI38999.1| integration host factor, beta subunit [Shewanella sp. MR-4]
 gi|113888990|gb|ABI43041.1| integration host factor, beta subunit [Shewanella sp. MR-7]
 gi|117612755|gb|ABK48209.1| integration host factor, beta subunit [Shewanella sp. ANA-3]
          Length = 95

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  LS K+    +  +  ++  +   G+ I+I  F +F +  +  R 
Sbjct: 1  MTKSELIEKLATRQSQLSAKEVEGAIKEMLEQMATTLESGDRIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V+++ + V  FK    L++R+
Sbjct: 61 GRNPKTGSSVELEGKYVPHFKPGKELRERV 90


>gi|292487831|ref|YP_003530706.1| integration host factor subunit beta [Erwinia amylovora CFBP1430]
 gi|292899058|ref|YP_003538427.1| integration host factor subunit beta [Erwinia amylovora ATCC
          49946]
 gi|291198906|emb|CBJ46016.1| integration host factor beta-subunit [Erwinia amylovora ATCC
          49946]
 gi|291553253|emb|CBA20298.1| Integration host factor beta-subunit (IHF-beta) [Erwinia
          amylovora CFBP1430]
 gi|312171952|emb|CBX80209.1| Integration host factor beta-subunit (IHF-beta) [Erwinia
          amylovora ATCC BAA-2158]
          Length = 95

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +   GE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERLAGQQSHIQAKVVEDAVKEMLEHMATTLSEGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91


>gi|91793110|ref|YP_562761.1| integration host factor, beta subunit [Shewanella denitrificans
          OS217]
 gi|122968769|sp|Q12ND8|IHFB_SHEDO RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|91715112|gb|ABE55038.1| integration host factor, beta subunit [Shewanella denitrificans
          OS217]
          Length = 95

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  LS K+    +  +  ++  +   G+ I+I  F +F +  +  R 
Sbjct: 1  MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLEGGDRIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V++D + V  FK    L++R+
Sbjct: 61 GRNPKTGTSVELDGKYVPHFKPGKELRERV 90


>gi|114563293|ref|YP_750806.1| integration host factor, beta subunit [Shewanella frigidimarina
          NCIMB 400]
 gi|122299645|sp|Q081U7|IHFB_SHEFN RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|114334586|gb|ABI71968.1| integration host factor, beta subunit [Shewanella frigidimarina
          NCIMB 400]
          Length = 95

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  LS K+    +  +  ++  +   G+ I+I  F +F +  +  R 
Sbjct: 1  MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLETGDRIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V ++ + V  FK    L++R+
Sbjct: 61 GRNPKTGTSVDLEGKYVPHFKPGKELRERV 90


>gi|152983749|ref|YP_001351441.1| putative DNA-binding protein [Pseudomonas aeruginosa PA7]
 gi|150958907|gb|ABR80932.1| probable DNA-binding protein [Pseudomonas aeruginosa PA7]
          Length = 90

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L  +I+++  L+++ + R +  L +EI  +  R +++ +  F TF  + +G+  G
Sbjct: 1  MRKPELAAAIAEKADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGASTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT Q VKI     V FK    L+  + 
Sbjct: 61 KNPQTGQPVKIKASNTVAFKPGKALRDAVN 90


>gi|78188818|ref|YP_379156.1| histone-like DNA-binding protein [Chlorobium chlorochromatii CaD3]
 gi|78171017|gb|ABB28113.1| Histone-like DNA-binding protein [Chlorobium chlorochromatii CaD3]
          Length = 102

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 57/101 (56%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           M  T T+ DLV +I++  GL++ ++   V  LF  I +S   G  I+I  F +F+++QK 
Sbjct: 1   MGNTTTKIDLVTTIARNTGLTKYETEAVVNCLFESIIESLKAGRRIEIRGFGSFNIRQKN 60

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
            R  RN +T ++V ++ ++V  FK S   K  + + ++  +
Sbjct: 61  VRKARNPRTGEKVMVESKQVPSFKISREFKLAVSESLKSSE 101


>gi|212692210|ref|ZP_03300338.1| hypothetical protein BACDOR_01706 [Bacteroides dorei DSM 17855]
 gi|212665087|gb|EEB25659.1| hypothetical protein BACDOR_01706 [Bacteroides dorei DSM 17855]
          Length = 90

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D + +++ E GLS+ D+ + V    + +  +   G+ + +  F TF V ++ +R G
Sbjct: 1  MNKADFISAVAAEAGLSKVDAKKAVEAFVSTVTKALKEGDKVSLIGFGTFSVAERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T   + I  ++V  FK  + L   I 
Sbjct: 61 INPSTKATITIPAKKVTKFKPGAELADAIK 90


>gi|296116536|ref|ZP_06835146.1| histone family protein DNA-binding protein [Gluconacetobacter
          hansenii ATCC 23769]
 gi|295976748|gb|EFG83516.1| histone family protein DNA-binding protein [Gluconacetobacter
          hansenii ATCC 23769]
          Length = 95

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 46/95 (48%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M K + + +LV ++++   L++  +   V  +F  I  +   G+ +++  F TF    + 
Sbjct: 1  MEKPLNKQELVAAVAENADLAKAKAGEVVDAVFGAIEKALSNGQEVRLVGFGTFVTATRK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +  GRN +T +E+ I     V FK    LK+ +  
Sbjct: 61 AAKGRNPRTGEEIDIPASTSVRFKPGKNLKEAVSK 95


>gi|121998363|ref|YP_001003150.1| histone family protein DNA-binding protein [Halorhodospira
          halophila SL1]
 gi|121589768|gb|ABM62348.1| histone family protein DNA-binding protein [Halorhodospira
          halophila SL1]
          Length = 91

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL + ++ E G+S++ +T  V+ +F  I +S   GE + I  F  F V  +  R G
Sbjct: 1  MNKADLAEKVAAETGVSKRVATDAVSAVFTGIEESLASGEDVSIPGFGKFAVVARPERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + + I     V FK  + LK+ +
Sbjct: 61 RNPQTGELIDIPAGMNVRFKPGAPLKRSV 89


>gi|325268085|ref|ZP_08134731.1| integration host factor beta subunit [Kingella denitrificans ATCC
          33394]
 gi|324980470|gb|EGC16136.1| integration host factor beta subunit [Kingella denitrificans ATCC
          33394]
          Length = 99

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 5  ITRSDLVKSISK-------EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          +T+S+L+  +++       +  L  KD    V  L + +  +  +G+ I+I  F +F + 
Sbjct: 1  MTKSELMARLAEVFAEKHSDSALQAKDVEYSVKVLVDTMTRALAKGQRIEIRGFGSFDLN 60

Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          ++ +R GRN +T + V++  ++V  FK    L++R+ +
Sbjct: 61 ERPARTGRNPKTGERVQVPAKKVPHFKPGKELRERVDN 98


>gi|312794857|ref|YP_004027779.1| DNA-binding protein HU [Burkholderia rhizoxinica HKI 454]
 gi|312166632|emb|CBW73635.1| DNA-binding protein HU [Burkholderia rhizoxinica HKI 454]
          Length = 92

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++ + G S+  +   + TL   I     +G+++++  F +F   ++ +R G
Sbjct: 1  MNKQELIDAVAAQTGASKAQTGETLDTLLEIIKTVVSKGDSVQLIGFGSFGSGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + +KI   + V F A    K  + +
Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFKDVVNE 91


>gi|295678172|ref|YP_003606696.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1002]
 gi|295438015|gb|ADG17185.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1002]
          Length = 92

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++ + G S+  +   + TL   I  S  +GEA+++  F +F   ++ +R G
Sbjct: 1  MNKQELIDAVAGQTGASKAQTGETLDTLLEVIKKSVSKGEAVQLIGFGSFGSGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + +KI   + V F A    K  +  
Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFKDAVNK 91


>gi|66048251|ref|YP_238092.1| histone-like DNA-binding protein [Pseudomonas syringae pv.
          syringae B728a]
 gi|63258958|gb|AAY40054.1| Histone-like bacterial DNA-binding protein [Pseudomonas syringae
          pv. syringae B728a]
          Length = 91

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + D+  +I+++  L+++ S R +  +  EI  +  R +++ +  F TF  + +G+R G
Sbjct: 1  MRKPDVAAAIAEKADLTKEQSNRVLNAILEEITGALNRKDSVTLVGFGTFLQRHRGARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT + VKI     V FK    LK  + 
Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKALKDSVN 90


>gi|332703826|ref|ZP_08423914.1| histone family protein DNA-binding protein [Desulfovibrio
          africanus str. Walvis Bay]
 gi|332553975|gb|EGJ51019.1| histone family protein DNA-binding protein [Desulfovibrio
          africanus str. Walvis Bay]
          Length = 91

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K+++++  +   ++++ V    + I DS ++GE ++I  F +F +K+     G
Sbjct: 1  MNKSELIKTLAEDKDIHVDEASKIVNAFVDSIKDSLLQGERVEIRGFGSFKIKEYKGYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   V ++P+R+  F+    LK+ + 
Sbjct: 61 RNPKTGDIVDVEPKRLPFFRPGKELKEFLN 90


>gi|302668567|ref|YP_003833015.1| DNA-binding protein [Butyrivibrio proteoclasticus B316]
 gi|302397531|gb|ADL36433.1| DNA-binding protein [Butyrivibrio proteoclasticus B316]
          Length = 94

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 49/94 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV++I+K+ GL++  S + V    + +     +   +++  F TF   ++ +R G
Sbjct: 1  MNKTELVEAIAKQTGLTKAASEKAVKAFTDVVTKELKKKGKVQLVGFGTFETAKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          +N QT   +KI    V  FKA   LK  +  + +
Sbjct: 61 KNPQTGAAIKIPAATVPKFKAGKALKDTVNGNKK 94


>gi|332970683|gb|EGK09664.1| integration host factor beta subunit [Kingella kingae ATCC 23330]
          Length = 101

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 7/99 (7%)

Query: 5  ITRSDLVKSISK-------EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          +T+S+L+  +++       +  L  KD    V  L + +  +  +G+ I+I  F +F + 
Sbjct: 1  MTKSELMAHLAEVFAERNADSELQSKDIEYSVKVLVDTMTRALAKGQRIEIRGFGSFDLN 60

Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           +  R+GRN +T + V++  + V  FK    L++R+ + 
Sbjct: 61 HRPPRIGRNPKTGERVEVPQKYVPHFKPGKELRERVDES 99


>gi|169824180|ref|YP_001691791.1| DNA binding protein [Finegoldia magna ATCC 29328]
 gi|302380836|ref|ZP_07269299.1| DNA-binding protein HU [Finegoldia magna ACS-171-V-Col3]
 gi|303234932|ref|ZP_07321557.1| DNA-binding protein HU [Finegoldia magna BVS033A4]
 gi|167830985|dbj|BAG07901.1| DNA binding protein [Finegoldia magna ATCC 29328]
 gi|302311331|gb|EFK93349.1| DNA-binding protein HU [Finegoldia magna ACS-171-V-Col3]
 gi|302494050|gb|EFL53831.1| DNA-binding protein HU [Finegoldia magna BVS033A4]
          Length = 96

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ SI+K+  LS+ +S R +      + ++  +GE +++  F TF  +++ +R G
Sbjct: 1  MNKSELLSSIAKKSELSKVESERALNAFIKTVEETLAKGEKVQLVGFGTFESRERKAREG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95
          RN +  +E ++I      VFKA   LK+ +  
Sbjct: 61 RNPRNPEEKIQIPASNAPVFKAGKSLKEAVNQ 92


>gi|167754539|ref|ZP_02426666.1| hypothetical protein CLORAM_00041 [Clostridium ramosum DSM 1402]
 gi|167705371|gb|EDS19950.1| hypothetical protein CLORAM_00041 [Clostridium ramosum DSM 1402]
          Length = 94

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 55/94 (58%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M   + + +LV+++SKE  L++KD+   V T+FN I  S V G+ + IS F TF V  + 
Sbjct: 1  MEVVMNKKELVETVSKERNLTKKDAEILVDTVFNTITRSVVEGDKVLISGFGTFKVNDRK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +R G + +T +E+ I   + V FK S+ LK  + 
Sbjct: 61 ARKGISPKTQEEMVIPASKTVTFKPSNRLKDAMN 94


>gi|284009059|emb|CBA76026.1| DNA-binding protein HU-alpha (HU-2) [Arsenophonus nasoniae]
          Length = 98

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 51/94 (54%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          +++T+ + D+V+ + ++  L++  +   +  L   I D+   GE ++   F TF    + 
Sbjct: 5  VNETMKKGDVVQYVMQKANLNKTQAKNALEALIECITDALKEGEQVQFVGFGTFRTNHRA 64

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +R+GRN +T  E+KI+   V VF A   LK+ + 
Sbjct: 65 ARIGRNPKTGAELKIEAANVPVFVAGKSLKEAVK 98


>gi|238784531|ref|ZP_04628539.1| Integration host factor subunit beta [Yersinia bercovieri ATCC
          43970]
 gi|238792398|ref|ZP_04636032.1| Integration host factor subunit beta [Yersinia intermedia ATCC
          29909]
 gi|238714594|gb|EEQ06598.1| Integration host factor subunit beta [Yersinia bercovieri ATCC
          43970]
 gi|238728324|gb|EEQ19844.1| Integration host factor subunit beta [Yersinia intermedia ATCC
          29909]
          Length = 94

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +   GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLAGQQSHVPAKAVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGAKVELEGKYVPHFKPGKELRDRAN 91


>gi|300725859|ref|ZP_07059323.1| DNA-binding protein, HU family [Prevotella bryantii B14]
 gi|299776847|gb|EFI73393.1| DNA-binding protein, HU family [Prevotella bryantii B14]
          Length = 94

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 49/93 (52%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K + +++L+  I+++ GLS+ DS +   +    I ++    + +++  F TF V  + +R
Sbjct: 2  KIMNKTELIDKIAEKAGLSKADSKKAFESTVAAIKEALAENDKVQLIGFGTFSVTSRPAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           G N  T  +++I  + V+ FKA + L   +  
Sbjct: 62 EGINPSTKAKIQIPAKNVIKFKAGAELSDAVNK 94


>gi|295691409|ref|YP_003595102.1| integration host factor subunit beta [Caulobacter segnis ATCC
          21756]
 gi|295433312|gb|ADG12484.1| integration host factor, beta subunit [Caulobacter segnis ATCC
          21756]
          Length = 96

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L+  ++ +   L++KD  R V  +   +  +   G  +++  F    V+ + +R 
Sbjct: 1  MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V++  + V  FK+   L+ R+  D
Sbjct: 61 GRNPRTGEAVEVRAKHVPFFKSGKELRARLNAD 93


>gi|317484455|ref|ZP_07943367.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
 gi|316924279|gb|EFV45453.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
          Length = 110

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 43/91 (47%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++DLV  I+    +++  + R +  +   + +       + ++ F TF  + +  R G
Sbjct: 20  MTKADLVAQIAARANMTKAAAERSLNAMLESVQEMLAEDGKLTLTGFGTFVAETRQERQG 79

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN +T   + I   +VV F+   +LK  +  
Sbjct: 80  RNPRTGDVITIAASKVVRFRPGKMLKDALNK 110


>gi|212703905|ref|ZP_03312033.1| hypothetical protein DESPIG_01958 [Desulfovibrio piger ATCC
          29098]
 gi|212672608|gb|EEB33091.1| hypothetical protein DESPIG_01958 [Desulfovibrio piger ATCC
          29098]
          Length = 91

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++LV+ I  + GL ++  +   +  +   + ++   GE++  + F +F V ++ +R 
Sbjct: 1  MTKAELVEKIHAKAGLPTKAKAEEALDAVVAALREALASGESVTFTGFGSFKVVERAARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I   +V  F     LK  I 
Sbjct: 61 GRNPRTGKEITIPASKVAKFTPGKGLKDAIK 91


>gi|182680278|ref|YP_001834424.1| integration host factor, alpha subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636161|gb|ACB96935.1| integration host factor, alpha subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 125

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 65/94 (69%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S+T+TR +L +++ +  GLSRK+S   V  + +E+ D+ V+GE +K+SSF +F ++ K  
Sbjct: 24  SQTLTRVNLAEAVYRSVGLSRKESAALVQMVLSELSDTLVKGETVKLSSFGSFIIRSKAE 83

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R+GRN +T  EV I  RRV+VFK S++LK ++  
Sbjct: 84  RIGRNPKTGIEVPITQRRVLVFKPSNVLKAKVNG 117


>gi|167469217|ref|ZP_02333921.1| integration host factor, alpha subunit [Yersinia pestis FV-1]
          Length = 98

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 43/81 (53%)

Query: 18 FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDP 77
           GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R GRN +T +++ I  
Sbjct: 16 LGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITA 75

Query: 78 RRVVVFKASSILKKRIMDDMR 98
          RRVV F+    LK R+     
Sbjct: 76 RRVVTFRPGQKLKSRVESATP 96


>gi|225010796|ref|ZP_03701264.1| histone family protein DNA-binding protein [Flavobacteria
          bacterium MS024-3C]
 gi|225005004|gb|EEG42958.1| histone family protein DNA-binding protein [Flavobacteria
          bacterium MS024-3C]
          Length = 90

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ + G+++  + + + +    +  S  +G  + +  F ++ V ++ +R G
Sbjct: 1  MNKTELIDAMAADAGITKAAAKKALESFLGNVEGSLKKGGRVSLVGFGSWSVSRRNARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   +KI  + VV FKA + L K + 
Sbjct: 61 RNPQTGATIKIAAKNVVKFKAGAELSKSVN 90


>gi|170726660|ref|YP_001760686.1| integration host factor subunit beta [Shewanella woodyi ATCC
          51908]
 gi|226709813|sp|B1KF50|IHFB_SHEWM RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|169812007|gb|ACA86591.1| integration host factor, beta subunit [Shewanella woodyi ATCC
          51908]
          Length = 95

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  LS K+    +  +  ++  +   G+ I+I  F +F +  +  R 
Sbjct: 1  MTKSELIEKLAMRQSQLSAKEVESAIKEMLEQMAQTLEGGDRIEIRGFGSFSLHFRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V++D + V  FK    L++R+
Sbjct: 61 GRNPKTGTSVELDGKYVPHFKPGKELRERV 90


>gi|295101017|emb|CBK98562.1| Bacterial nucleoid DNA-binding protein [Faecalibacterium
          prausnitzii L2-6]
          Length = 89

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DL+  ++    +S+K +   V   F  +  +   GE I IS F TF V+++  R G
Sbjct: 1  MTKTDLIAQVAANTEMSKKSAEMAVNAAFEALGKAMAEGEKISISGFGTFEVRERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T + + I   + +VFK    LK  +
Sbjct: 61 INPRTREPITIAASKSIVFKPGKALKDTL 89


>gi|260593420|ref|ZP_05858878.1| DNA-binding protein HU-beta [Prevotella veroralis F0319]
 gi|260534696|gb|EEX17313.1| DNA-binding protein HU-beta [Prevotella veroralis F0319]
          Length = 91

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+    LS+ D+ + +      I D+ V G+ +++  F TF   ++ +  G
Sbjct: 1  MNKTELIEKIAASANLSKADAKKALDATTEAIKDALVAGDKVQLVGFGTFSTNERPAHEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N  T Q+++I  ++V  FKA + L   +  
Sbjct: 61 MNPATKQKIQIPAKKVAKFKAGAELSDAVNK 91


>gi|297570483|ref|YP_003691827.1| histone family protein DNA-binding protein [Desulfurivibrio
          alkaliphilus AHT2]
 gi|296926398|gb|ADH87208.1| histone family protein DNA-binding protein [Desulfurivibrio
          alkaliphilus AHT2]
          Length = 91

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++++++   L  +++     T+   +  +  RGE I+I  F +F VK+  S  G
Sbjct: 1  MNKSELIEALARNTELPIREAGAVTGTILEAMTAAMARGENIEIRGFGSFVVKEYESYYG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +++K+ P+R+  FK    L++++ 
Sbjct: 61 RNPKTGEKIKVPPKRLPFFKVGKELREKLN 90


>gi|320539237|ref|ZP_08038907.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Serratia symbiotica str. Tucson]
 gi|320030629|gb|EFW12638.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Serratia symbiotica str. Tucson]
          Length = 94

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +   GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLASQQSHIPAKTVEDAVKEILEHMAVTLADGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V++D + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRAN 91


>gi|126174292|ref|YP_001050441.1| integration host factor subunit beta [Shewanella baltica OS155]
 gi|153000798|ref|YP_001366479.1| integration host factor subunit beta [Shewanella baltica OS185]
 gi|160875507|ref|YP_001554823.1| integration host factor subunit beta [Shewanella baltica OS195]
 gi|217973243|ref|YP_002357994.1| integration host factor subunit beta [Shewanella baltica OS223]
 gi|304408839|ref|ZP_07390460.1| integration host factor, beta subunit [Shewanella baltica OS183]
 gi|307302842|ref|ZP_07582597.1| integration host factor, beta subunit [Shewanella baltica BA175]
 gi|166975888|sp|A3D4A9|IHFB_SHEB5 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|166975889|sp|A6WNM7|IHFB_SHEB8 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|189045043|sp|A9L2X4|IHFB_SHEB9 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|254803540|sp|B8EA98|IHFB_SHEB2 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|125997497|gb|ABN61572.1| integration host factor, beta subunit [Shewanella baltica OS155]
 gi|151365416|gb|ABS08416.1| integration host factor, beta subunit [Shewanella baltica OS185]
 gi|160861029|gb|ABX49563.1| integration host factor, beta subunit [Shewanella baltica OS195]
 gi|217498378|gb|ACK46571.1| integration host factor, beta subunit [Shewanella baltica OS223]
 gi|304352660|gb|EFM17057.1| integration host factor, beta subunit [Shewanella baltica OS183]
 gi|306913202|gb|EFN43624.1| integration host factor, beta subunit [Shewanella baltica BA175]
 gi|315267694|gb|ADT94547.1| integration host factor, beta subunit [Shewanella baltica OS678]
          Length = 95

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  LS K+    +  +  ++  +   G+ I+I  F +F +  +  R 
Sbjct: 1  MTKSELIEKLATRQSQLSAKEVEGAIKEMLEQMATTLESGDRIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V ++ + V  FK    L++R+
Sbjct: 61 GRNPKTGSSVDLEGKYVPHFKPGKELRERV 90


>gi|78356842|ref|YP_388291.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
 gi|78219247|gb|ABB38596.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
          Length = 91

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 55/91 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K +S+E  +S +++T  VTT  + + D+   G+ ++I  F +F VKQ     G
Sbjct: 1  MNKSELIKVLSEENNISIEEATLVVTTFVDSMKDALAEGDRVEIRGFGSFKVKQYEGYSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + V + P+++  F+A   LK+ + D
Sbjct: 61 RNPKTGEIVNVQPKQLPFFRAGKELKEFLND 91


>gi|157369953|ref|YP_001477942.1| integration host factor subunit beta [Serratia proteamaculans
          568]
 gi|270261193|ref|ZP_06189466.1| integration host factor, beta subunit [Serratia odorifera 4Rx13]
 gi|166975886|sp|A8GCH4|IHFB_SERP5 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|157321717|gb|ABV40814.1| integration host factor, beta subunit [Serratia proteamaculans
          568]
 gi|270044677|gb|EFA17768.1| integration host factor, beta subunit [Serratia odorifera 4Rx13]
          Length = 94

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +   GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLAGQQSHVPAKAVEDAVKEMLEHMAATLADGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V++D + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRAN 91


>gi|119510023|ref|ZP_01629164.1| Histone-like DNA-binding protein [Nodularia spumigena CCY9414]
 gi|119465347|gb|EAW46243.1| Histone-like DNA-binding protein [Nodularia spumigena CCY9414]
          Length = 100

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 55/100 (55%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + + +LV ++S++  +++K +   +T     I ++   G+ + +  F +F  +++ +R G
Sbjct: 1   MNKGELVDAVSEKASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           RN +TN++++I   RV  F A  + ++++      ++  +
Sbjct: 61  RNPKTNEKMEIPATRVPAFSAGKLFREKVAPPKEPKEVKE 100


>gi|39997218|ref|NP_953169.1| integration host factor subunit alpha [Geobacter sulfurreducens
          PCA]
 gi|39984108|gb|AAR35496.1| integration host factor, alpha subunit [Geobacter sulfurreducens
          PCA]
          Length = 91

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/90 (41%), Positives = 57/90 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ +S   G+S+KDS   V  +F+ + ++   GE IKIS F  F +K K +R G
Sbjct: 1  MTKADIVERVSDRCGISKKDSIEMVELVFSILKNTLEIGEDIKISGFGKFEIKNKHARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   + I+ RR++ FK S+ILK  I 
Sbjct: 61 RNPQTGDAITIEARRILTFKPSTILKNNIN 90


>gi|305666663|ref|YP_003862950.1| DNA-binding protein HU-beta [Maribacter sp. HTCC2170]
 gi|88707468|gb|EAQ99712.1| DNA-binding protein HU-beta (NS1) (HU-1) [Maribacter sp.
          HTCC2170]
          Length = 90

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ + G+++  + + + +    +  S  +G+ + +  F ++ V ++ +R G
Sbjct: 1  MNKTELIDAMAADAGITKAAAKKSLESFLGNVEGSLKKGDRVSLVGFGSWSVSRRNAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T + ++I  + VV FKA + L K + 
Sbjct: 61 RNPSTGKTIQIAAKNVVKFKAGADLGKAVN 90


>gi|67920710|ref|ZP_00514229.1| Histone-like bacterial DNA-binding protein [Crocosphaera watsonii
          WH 8501]
 gi|67856827|gb|EAM52067.1| Histone-like bacterial DNA-binding protein [Crocosphaera watsonii
          WH 8501]
          Length = 93

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++ +  +++K +   ++   + I ++    + + +  F +F  + + +R G
Sbjct: 1  MNKSELIDAVANKAEVTKKQAEMVISATIDTIMEAVASDDKVTLVGFGSFESRDRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +TN+++ I   +V  F A    K+ + 
Sbjct: 61 RNPKTNEKMNIPATKVPAFSAGKKFKEAVA 90


>gi|302878375|ref|YP_003846939.1| integration host factor, beta subunit [Gallionella
          capsiferriformans ES-2]
 gi|302581164|gb|ADL55175.1| integration host factor, beta subunit [Gallionella
          capsiferriformans ES-2]
          Length = 93

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDL+  +++    L  KD+   V  + + +  +  RG  ++I  F +F +  +  R 
Sbjct: 1  MTRSDLIARLAELHPQLLAKDAEMAVKVILDALSSTLSRGGRVEIRGFGSFGLNYRPPRQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T  +V +  + V  FKA   L++R+   
Sbjct: 61 GRNPKTGDKVGVPAKYVPHFKAGKDLRERVGKA 93


>gi|325578436|ref|ZP_08148571.1| integration host factor subunit alpha [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160172|gb|EGC72301.1| integration host factor subunit alpha [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 110

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 50/92 (54%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           TIT+ D+ + +  ++ L + ++   V   F EI  S   G  +K+S F  F ++ K SR 
Sbjct: 14  TITKIDITEYLLDKYQLQKAEAKALVEDFFEEIRLSLESGGEVKLSGFGNFELRNKASRP 73

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           GRN +T + + +  RRVV FK    L+ R+ +
Sbjct: 74  GRNPKTGESIPVSARRVVAFKPGQKLRARVEN 105


>gi|323142051|ref|ZP_08076899.1| DNA-binding protein HU-alpha [Phascolarctobacterium sp. YIT 12067]
 gi|322413438|gb|EFY04309.1| DNA-binding protein HU-alpha [Phascolarctobacterium sp. YIT 12067]
          Length = 118

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 48/90 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L+ +++++ GL++KD  + +T     + +   +G+ +++  F TF  + +  R G
Sbjct: 27  MNKTELIAAVAEKAGLTKKDVEKTITATLETVKEVVAKGDKVQVVGFGTFEARARKEREG 86

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           +N Q  ++V I    +  FKA    K  + 
Sbjct: 87  KNPQNGEKVVIPAATIPAFKAGKAFKDAVN 116


>gi|312879957|ref|ZP_07739757.1| bacterial nucleoid protein Hbs [Aminomonas paucivorans DSM 12260]
 gi|310783248|gb|EFQ23646.1| bacterial nucleoid protein Hbs [Aminomonas paucivorans DSM 12260]
          Length = 93

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T++DLV  ++K    L++K +   V  LF  +  +  +G+ +++  F TF V+++ +R 
Sbjct: 1  MTKADLVNELAKAVEDLTKKKAAEIVDALFETVQGALAKGDKVQVVGFGTFEVQRRAARQ 60

Query: 64 GRNLQ-TNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN Q   + + I  + V VF+A   LK  +  
Sbjct: 61 GRNPQDPKKTINIPAKNVPVFRAGKALKDLVNK 93


>gi|16127816|ref|NP_422380.1| integration host factor subunit beta [Caulobacter crescentus
          CB15]
 gi|221236637|ref|YP_002519074.1| integration host factor subunit beta [Caulobacter crescentus
          NA1000]
 gi|21362615|sp|Q9A2H5|IHFB_CAUCR RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|254803531|sp|B8H6A5|IHFB_CAUCN RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|13425330|gb|AAK25548.1| integration host factor beta subunit [Caulobacter crescentus
          CB15]
 gi|220965810|gb|ACL97166.1| integration host factor beta-subunit [Caulobacter crescentus
          NA1000]
          Length = 96

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L+  ++ +   L++KD  R V  +   +  +   G  +++  F    V+ + +R 
Sbjct: 1  MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V +  + V  FK+   L+ R+  D
Sbjct: 61 GRNPRTGEAVDVRAKHVPFFKSGKELRARLNAD 93


>gi|38637989|ref|NP_942963.1| putative histone-like protein [Ralstonia eutropha H16]
 gi|32527327|gb|AAP86077.1| putative histone-like protein [Ralstonia eutropha H16]
          Length = 114

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 54/95 (56%), Gaps = 1/95 (1%)

Query: 3   KTITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + +T+++L+++I+    GL++  +   +    + I D+  +G+A+ +  F TF   ++  
Sbjct: 20  RIMTKAELIEAIAAGVDGLTKAKAEEALNVTLHAIMDAVAKGDALSLVGFGTFSKGERAE 79

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R+ RN +T +E+K++  R V FKA    ++ +  +
Sbjct: 80  RMARNPRTGEEIKVEAARTVKFKAGQRFREAVNQE 114


>gi|332292782|ref|YP_004431391.1| histone family protein DNA-binding protein [Krokinobacter
          diaphorus 4H-3-7-5]
 gi|332170868|gb|AEE20123.1| histone family protein DNA-binding protein [Krokinobacter
          diaphorus 4H-3-7-5]
          Length = 90

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  +++  G+++  + + + +   ++  +   G  + +  F ++ V ++ +R G
Sbjct: 1  MNKSELIDGMAEHAGITKAAAKKALESFLGDVEKTLKDGGRVSLVGFGSWSVSKRNAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI  + VV FKA S L   + 
Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGSELATSVN 90


>gi|146328836|ref|YP_001209044.1| integration host factor, beta subunit [Dichelobacter nodosus
          VCS1703A]
 gi|166918544|sp|A5EWQ2|IHFB_DICNV RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|146232306|gb|ABQ13284.1| integration host factor, beta subunit [Dichelobacter nodosus
          VCS1703A]
          Length = 96

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 54/95 (56%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ +  ++  L  +D    V  +   IC +  +G+ ++I  F +F +  + SR 
Sbjct: 1  MTKSELIERLVMKYPQLRAQDVEDTVKLMIERICHTLEKGDRVEIRGFGSFSLHYRESRQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T + V++  + +  F+A   L++R+ +++ 
Sbjct: 61 GRNPKTGESVRVPAKSIPYFRAGKELRERVDEEIN 95


>gi|325288078|ref|YP_004263868.1| histone family protein DNA-binding protein [Cellulophaga lytica
          DSM 7489]
 gi|324323532|gb|ADY30997.1| histone family protein DNA-binding protein [Cellulophaga lytica
          DSM 7489]
          Length = 90

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ + G+++  + + + +    +  S  +G+ + +  F ++ V ++ +R G
Sbjct: 1  MNKTELIDAMAADAGITKAAAKKALESFLGNVEGSLKKGDRVSLVGFGSWSVTRREARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI  + VV FKA + L   + 
Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGTELSNSVN 90


>gi|22126657|ref|NP_670080.1| integration host factor subunit beta [Yersinia pestis KIM 10]
 gi|45441027|ref|NP_992566.1| integration host factor subunit beta [Yersinia pestis biovar
          Microtus str. 91001]
 gi|51595758|ref|YP_069949.1| integration host factor subunit beta [Yersinia pseudotuberculosis
          IP 32953]
 gi|108806681|ref|YP_650597.1| integration host factor subunit beta [Yersinia pestis Antiqua]
 gi|108812745|ref|YP_648512.1| integration host factor subunit beta [Yersinia pestis Nepal516]
 gi|145599574|ref|YP_001163650.1| integration host factor subunit beta [Yersinia pestis Pestoides
          F]
 gi|149366650|ref|ZP_01888684.1| integration host factor beta-subunit [Yersinia pestis CA88-4125]
 gi|153947721|ref|YP_001401544.1| integration host factor subunit beta [Yersinia pseudotuberculosis
          IP 31758]
 gi|162421385|ref|YP_001606430.1| integration host factor subunit beta [Yersinia pestis Angola]
 gi|165924753|ref|ZP_02220585.1| integration host factor, beta subunit [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165938957|ref|ZP_02227510.1| integration host factor, beta subunit [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|166009945|ref|ZP_02230843.1| integration host factor, beta subunit [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166211556|ref|ZP_02237591.1| integration host factor, beta subunit [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|167399912|ref|ZP_02305430.1| integration host factor, beta subunit [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167419646|ref|ZP_02311399.1| integration host factor, beta subunit [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167424246|ref|ZP_02315999.1| integration host factor, beta subunit [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|167470895|ref|ZP_02335599.1| integration host factor, beta subunit [Yersinia pestis FV-1]
 gi|170024892|ref|YP_001721397.1| integration host factor subunit beta [Yersinia pseudotuberculosis
          YPIII]
 gi|186894836|ref|YP_001871948.1| integration host factor subunit beta [Yersinia pseudotuberculosis
          PB1/+]
 gi|218928541|ref|YP_002346416.1| integration host factor subunit beta [Yersinia pestis CO92]
 gi|229841363|ref|ZP_04461522.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843468|ref|ZP_04463614.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Yersinia pestis biovar Orientalis str. India 195]
 gi|229895841|ref|ZP_04511011.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Yersinia pestis Pestoides A]
 gi|229903153|ref|ZP_04518266.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Yersinia pestis Nepal516]
 gi|238757620|ref|ZP_04618804.1| Integration host factor subunit beta [Yersinia aldovae ATCC
          35236]
 gi|270486948|ref|ZP_06204022.1| integration host factor subunit beta [Yersinia pestis KIM D27]
 gi|21362608|sp|Q8ZGB1|IHFB_YERPE RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|81691814|sp|Q66CI5|IHFB_YERPS RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|123073279|sp|Q1CGG8|IHFB_YERPN RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|123372652|sp|Q1CA70|IHFB_YERPA RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|166975897|sp|A7FJW6|IHFB_YERP3 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|166975898|sp|A4TN15|IHFB_YERPP RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709822|sp|B2KA26|IHFB_YERPB RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709823|sp|A9R7I5|IHFB_YERPG RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709824|sp|B1JRD6|IHFB_YERPY RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|21959671|gb|AAM86331.1|AE013881_1 integration host factor (IHF), beta subunit [Yersinia pestis KIM
          10]
 gi|45435886|gb|AAS61443.1| integration host factor beta-subunit [Yersinia pestis biovar
          Microtus str. 91001]
 gi|51589040|emb|CAH20658.1| integration host factor beta-subunit [Yersinia pseudotuberculosis
          IP 32953]
 gi|108776393|gb|ABG18912.1| integration host factor beta-subunit [Yersinia pestis Nepal516]
 gi|108778594|gb|ABG12652.1| integration host factor beta-subunit [Yersinia pestis Antiqua]
 gi|115347152|emb|CAL20045.1| integration host factor beta-subunit [Yersinia pestis CO92]
 gi|145211270|gb|ABP40677.1| integration host factor beta-subunit [Yersinia pestis Pestoides
          F]
 gi|149291024|gb|EDM41099.1| integration host factor beta-subunit [Yersinia pestis CA88-4125]
 gi|152959216|gb|ABS46677.1| integration host factor, beta subunit [Yersinia
          pseudotuberculosis IP 31758]
 gi|162354200|gb|ABX88148.1| integration host factor, beta subunit [Yersinia pestis Angola]
 gi|165913104|gb|EDR31728.1| integration host factor, beta subunit [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|165923813|gb|EDR40945.1| integration host factor, beta subunit [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165991341|gb|EDR43642.1| integration host factor, beta subunit [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166207327|gb|EDR51807.1| integration host factor, beta subunit [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|166962387|gb|EDR58408.1| integration host factor, beta subunit [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167050620|gb|EDR62028.1| integration host factor, beta subunit [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167057095|gb|EDR66858.1| integration host factor, beta subunit [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|169751426|gb|ACA68944.1| integration host factor, beta subunit [Yersinia
          pseudotuberculosis YPIII]
 gi|186697862|gb|ACC88491.1| integration host factor, beta subunit [Yersinia
          pseudotuberculosis PB1/+]
 gi|229678923|gb|EEO75026.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Yersinia pestis Nepal516]
 gi|229689815|gb|EEO81876.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Yersinia pestis biovar Orientalis str. India 195]
 gi|229697729|gb|EEO87776.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700764|gb|EEO88793.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Yersinia pestis Pestoides A]
 gi|238704125|gb|EEP96658.1| Integration host factor subunit beta [Yersinia aldovae ATCC
          35236]
 gi|270335452|gb|EFA46229.1| integration host factor subunit beta [Yersinia pestis KIM D27]
 gi|320015748|gb|ADV99319.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 94

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +   GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLAGQQSHVPAKVVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91


>gi|289677399|ref|ZP_06498289.1| histone-like DNA-binding protein [Pseudomonas syringae pv.
          syringae FF5]
 gi|302187085|ref|ZP_07263758.1| histone-like DNA-binding protein [Pseudomonas syringae pv.
          syringae 642]
 gi|330898762|gb|EGH30181.1| histone-like DNA-binding protein [Pseudomonas syringae pv.
          japonica str. M301072PT]
 gi|330937458|gb|EGH41423.1| histone-like DNA-binding protein [Pseudomonas syringae pv. pisi
          str. 1704B]
 gi|330952450|gb|EGH52710.1| histone-like DNA-binding protein [Pseudomonas syringae Cit 7]
 gi|330976274|gb|EGH76336.1| histone-like DNA-binding protein [Pseudomonas syringae pv. aptata
          str. DSM 50252]
          Length = 91

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + ++  +I+++  L+++ S R +  +  EI  +  R +++ +  F TF  + +G+R G
Sbjct: 1  MRKPEVAAAIAEKADLTKEQSNRVLNAILEEITGALNRKDSVTLVGFGTFLQRHRGARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT + VKI     V FK    LK  + 
Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKALKDSVN 90


>gi|118580291|ref|YP_901541.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
 gi|118503001|gb|ABK99483.1| bacterial nucleoid protein Hbs [Pelobacter propionicus DSM 2379]
          Length = 94

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 54/94 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+ + +S   G ++K+S   V  +F+ I  +   GE IKI+ F  F VKQK  R G
Sbjct: 1  MTKADIFEKVSSNLGYTKKESAELVEAVFSLIKSTLESGEKIKIAGFGNFEVKQKADRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN Q  + + I+ RR++ FK S +LK  I    +
Sbjct: 61 RNPQNGETITIEARRILTFKPSGVLKTAINGAKQ 94


>gi|52425530|ref|YP_088667.1| HimA protein [Mannheimia succiniciproducens MBEL55E]
 gi|81691358|sp|Q65SH8|IHFB_MANSM RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|52307582|gb|AAU38082.1| HimA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 94

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++S+ ++   +S K     V  +   +  +   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIESLVEKNHSISVKSVENAVKEILEHMSQALESGDRIEIRGFGSFSLHFRQPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  +VK+D + V  FKA   L++R+
Sbjct: 61 GRNPKTGAQVKLDAKCVPHFKAGKELRERV 90


>gi|85058972|ref|YP_454674.1| integration host factor subunit beta [Sodalis glossinidius str.
          'morsitans']
 gi|123766455|sp|Q2NUA6|IHFB_SODGM RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|84779492|dbj|BAE74269.1| integration host factor beta-subunit [Sodalis glossinidius str.
          'morsitans']
          Length = 94

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ +   +  K     V  +   +  +   GE I+I  F +F +  +  R+
Sbjct: 1  MTKSELIERLAGQHAHIQAKVVEDAVKEMLEHMATTLASGERIEIRGFGSFSLHYRAPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T   V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDRVELEGKYVPHFKPGKELRDRAN 91


>gi|319403502|emb|CBI77081.1| integration host factor beta chain [Bartonella rochalimae ATCC
          BAA-1498]
 gi|319406416|emb|CBI80056.1| integration host factor beta chain [Bartonella sp. 1-1C]
          Length = 92

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+LV+ I++    L ++D+   V+ +F +I  +   G+ +++  F  F +K + +R 
Sbjct: 1  MVKSELVQIIARHNPHLMQRDAENVVSAIFEKISAALANGQRVELRGFGAFSIKTRSARN 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V ++ + V  FK    L+ R+  
Sbjct: 61 GRNPRTGETVMVEEKWVPFFKTGKDLRDRLNK 92


>gi|291544776|emb|CBL17885.1| bacterial nucleoid protein Hbs [Ruminococcus sp. 18P13]
          Length = 91

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DL+ +I+   G S+KD+ R +  + + I +    GE I +  F TF V+++  +  
Sbjct: 1  MTKADLIDAIAASAGSSKKDAERALQVVLSTITEKLAAGEKISLIGFGTFEVRERKEKTC 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T +++     +  VFKA   LK  +  
Sbjct: 61 INPRTKEKLTAPACKAPVFKAGKALKDAVNK 91


>gi|188579482|ref|YP_001922927.1| integration host factor, beta subunit [Methylobacterium populi
           BJ001]
 gi|179342980|gb|ACB78392.1| integration host factor, beta subunit [Methylobacterium populi
           BJ001]
          Length = 102

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 1/101 (0%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV  I+++   L ++D    V  + + I D+  +G+ +++  F  F VK++ +R 
Sbjct: 1   MIKSELVLKIAEQNPHLYQRDVETLVNAILDTIADALAQGDRVELRGFGAFSVKRREARR 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           GRN +T + V +  + + VFK    ++ R+     G +   
Sbjct: 61  GRNPRTGESVSVSEKAIPVFKTGKEMRLRLNRAGIGDEQPS 101


>gi|313679460|ref|YP_004057199.1| bacterial nucleoid protein hbs [Oceanithermus profundus DSM
          14977]
 gi|313152175|gb|ADR36026.1| bacterial nucleoid protein Hbs [Oceanithermus profundus DSM
          14977]
          Length = 98

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 52/91 (57%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+T+SDLV  +++  GL +KD+   + T  +EI     R   ++++ F TF V+++ +R
Sbjct: 6  KTVTKSDLVNHVAEITGLKKKDAKACIDTFLDEIATFLDRDYKVQLTGFGTFEVRKRKAR 65

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           G    T +++KI   +   FK    LK+++
Sbjct: 66 TGVKPGTTEKIKIPASKYPAFKPGKALKEKV 96


>gi|225849331|ref|YP_002729495.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644673|gb|ACN99723.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 94

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 55/94 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+  ++++ GL + ++ R V      + ++  +GE   I     F+V+++ +R G
Sbjct: 1  MTKSELIAKVAEKAGLKKAEAERAVNAAIEAVVEALSKGERTAIPGLGVFNVRERKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T +E+KI  R+VV F A+  LK+ +    +
Sbjct: 61 RNPRTGKEIKIPARKVVAFTAAKSLKEALNAKKK 94


>gi|291287116|ref|YP_003503932.1| histone family protein DNA-binding protein [Denitrovibrio
          acetiphilus DSM 12809]
 gi|290884276|gb|ADD67976.1| histone family protein DNA-binding protein [Denitrovibrio
          acetiphilus DSM 12809]
          Length = 91

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/91 (42%), Positives = 59/91 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I ++ GL++KD  + V  LFNE+ D  +    +KIS F  F VK++G R+G
Sbjct: 1  MTKADIVELIHEKLGLTKKDIAKVVDELFNEVRDQILGKNNVKISGFGNFEVKKRGRRIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T  E  I+PR VVVF+ S I K  + D
Sbjct: 61 RNPKTGVETVIEPRTVVVFRPSQIFKDEVND 91


>gi|85375322|ref|YP_459384.1| integration host factor beta-subunit [Erythrobacter litoralis
          HTCC2594]
 gi|84788405|gb|ABC64587.1| integration host factor beta-subunit [Erythrobacter litoralis
          HTCC2594]
          Length = 92

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++++++    L  ++  + V   F+EI    V G  +++  F  F  +++ +R 
Sbjct: 1  MIRSELLQALARDNPDLRAEEIEQVVDIFFDEISRRLVEGGRVELRGFGAFSTREREARQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V +  +RV  FK    ++  + +
Sbjct: 61 GRNPRTGEPVSVPAKRVPYFKPGKEMRNALNE 92


>gi|332308727|ref|YP_004436577.1| histone family protein DNA-binding protein [Glaciecola
          agarilytica 4H-3-7+YE-5]
 gi|332176056|gb|AEE25309.1| histone family protein DNA-binding protein [Glaciecola
          agarilytica 4H-3-7+YE-5]
          Length = 92

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 43/92 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  +++ ++   G++++++   +    + +  +    + + +  F  F  + +  R+G
Sbjct: 1  MNKQHVIEIMALASGITQREAKLALNAFTDAVQVTLQNNDKVSLVGFGNFSTRHRAERIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN QT + + I    +  FKAS  LK    + 
Sbjct: 61 RNPQTGEPLTIPAATIPEFKASKCLKDSCNNA 92


>gi|224541850|ref|ZP_03682389.1| hypothetical protein CATMIT_01022 [Catenibacterium mitsuokai DSM
          15897]
 gi|224525200|gb|EEF94305.1| hypothetical protein CATMIT_01022 [Catenibacterium mitsuokai DSM
          15897]
          Length = 90

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  +S++  L++KD+   V T+F+ + +S + G+ + IS F TF +     R G
Sbjct: 1  MNKKELINIVSEKRDLTKKDAEILVNTVFDTMVESMIDGDKVLISGFGTFKINHCLERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           + +T + + I   R V FK S+ LK  + 
Sbjct: 61 VSPKTKEPIIIPASRTVSFKPSNRLKDAMN 90


>gi|218887884|ref|YP_002437205.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris str. 'Miyazaki F']
 gi|218758838|gb|ACL09737.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris str. 'Miyazaki F']
          Length = 91

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++LV+ I  + GL S+  +   +      + D+   GE++  + F +F V ++ +R 
Sbjct: 1  MTKAELVEKIRAKAGLASKVQAEGALDATIAVLADALAAGESVTFTGFGSFKVTERAARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I   +VV F    +LK  + 
Sbjct: 61 GRNPRTGEEITIPSGKVVKFTPGKLLKDSVK 91


>gi|257094678|ref|YP_003168319.1| histone family protein DNA-binding protein [Candidatus
          Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047202|gb|ACV36390.1| histone family protein DNA-binding protein [Candidatus
          Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 96

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%)

Query: 5  ITRSDLVKSISKEFG---LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +TRS+L+  ++       L+ KD    V  +   + ++ V G  I+I  F +F +     
Sbjct: 1  MTRSELITRLAAHSHFAQLTAKDDELTVKAILEGMSEALVSGGRIEIHGFGSFALNDSAP 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          R GRN  T + V +  +RV  F     L++R+ 
Sbjct: 61 RNGRNPMTGETVPVPAKRVPHFTPGKELRERVE 93


>gi|148658098|ref|YP_001278303.1| histone family protein DNA-binding protein [Roseiflexus sp. RS-1]
 gi|148570208|gb|ABQ92353.1| bacterial nucleoid protein Hbs [Roseiflexus sp. RS-1]
          Length = 92

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 51/92 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D +K++++    S+K++   V      I ++  RGE + ++ F TF V+Q+ +R G
Sbjct: 1  MQKTDFIKAVAERANRSQKETKEIVDAALEVITEALKRGEKVTLTGFGTFEVRQRQAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N QT  +++I   +   F ASS LK  + D 
Sbjct: 61 VNPQTRSKIQIPATKTPGFSASSTLKNAVKDS 92


>gi|83814878|ref|YP_445501.1| DNA-binding protein HU [Salinibacter ruber DSM 13855]
 gi|83756272|gb|ABC44385.1| DNA-binding protein HU [Salinibacter ruber DSM 13855]
          Length = 100

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 50/98 (51%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           ++T++DL+  I+   GL++ ++   V      +  +   G  I++  F  F V+ +  R 
Sbjct: 2   SMTKADLIDQIADGTGLTKIETRAVVEGFMTAVRGAMKEGRRIELREFGVFEVQHRAPRT 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN QTN+ V+I+ R   VF+ S  L + +    +  +
Sbjct: 62  GRNPQTNEPVEIEDRYKPVFRPSDKLSEAVDAAHKADE 99


>gi|296282081|ref|ZP_06860079.1| integration host factor beta-subunit [Citromicrobium
          bathyomarinum JL354]
          Length = 93

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ +++    L  ++  + V   F EI      G  I++  F  F  +++ +R 
Sbjct: 1  MIRSELLQKLAQDNPELRAQEVEQVVDIFFEEIAQRLAEGGRIELRGFGAFSTREREART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V +  +RV  FK    ++  +  D
Sbjct: 61 GRNPRTGEAVDVPAKRVPYFKPGKEMRNALNPD 93


>gi|307292730|ref|ZP_07572576.1| integration host factor, beta subunit [Sphingobium
          chlorophenolicum L-1]
 gi|306880796|gb|EFN12012.1| integration host factor, beta subunit [Sphingobium
          chlorophenolicum L-1]
          Length = 96

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ +++E   L+ ++  R V   F EI D    G  +++  F  F  + + +R 
Sbjct: 1  MIRSELIQKLAEENQNLNLQEVERIVDLFFKEIVDRLSTGGRVELRGFGAFTTRARDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T ++V +D +RV  FK    +++R+ 
Sbjct: 61 GRNPRTGEQVPVDAKRVPYFKPGKEMRERLN 91


>gi|284007585|emb|CBA73152.1| integration host factor beta-subunit [Arsenophonus nasoniae]
          Length = 106

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 4   TITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           T+TRS+L++  I++   +  K     V  + + +  +  +GE I+I  F +F +  +  R
Sbjct: 12  TMTRSELIERLINQLAHIPAKLIEEAVKEMLDHMAITLAKGERIEIRGFGSFSLHYRAPR 71

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           +GRN +T  +V +  + V  FK    L+ R+ 
Sbjct: 72  IGRNPKTGDKVDLKGKHVPHFKPGKELRDRVN 103


>gi|158423235|ref|YP_001524527.1| histone-like DNA-binding protein [Azorhizobium caulinodans ORS
          571]
 gi|158330124|dbj|BAF87609.1| histone-like bacterial DNA-binding protein [Azorhizobium
          caulinodans ORS 571]
          Length = 92

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+++L+ ++++E  L++  +   V   F+ I  +   GE +K+  F +F V  + +R GR
Sbjct: 3  TKNELIAAVAEEAKLTKAAAAAAVDATFDIIAKALKDGEEVKLIGFGSFSVVTRAAREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N +T + VKI   +   F     LK+ + D
Sbjct: 63 NPRTGKPVKIAASKAPKFTPGKGLKEAVND 92


>gi|59712365|ref|YP_205141.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Vibrio fischeri ES114]
 gi|197334359|ref|YP_002156580.1| integration host factor, beta subunit [Vibrio fischeri MJ11]
 gi|75506974|sp|Q5E3Z3|IHFB_VIBF1 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709817|sp|B5FG57|IHFB_VIBFM RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|59480466|gb|AAW86253.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Vibrio fischeri ES114]
 gi|197315849|gb|ACH65296.1| integration host factor, beta subunit [Vibrio fischeri MJ11]
          Length = 93

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + SK+  LS K     V  +  ++  +   G+ I+I  F +F +  +  R+
Sbjct: 1  MTKSELIEQLCSKKPQLSAKQVEDTVKEILEQMATTLEGGDRIEIRGFGSFSLHYREPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V++D + V  FK    L++R+ 
Sbjct: 61 GRNPKTGDKVELDGKFVPHFKPGKELRERVN 91


>gi|34498500|ref|NP_902715.1| integration host factor beta-subunit [Chromobacterium violaceum
          ATCC 12472]
 gi|81711737|sp|Q7NTK9|IHFB_CHRVO RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|34104355|gb|AAQ60714.1| integration host factor beta-subunit [Chromobacterium violaceum
          ATCC 12472]
          Length = 104

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 5/94 (5%)

Query: 5  ITRSDLVKSISKE-----FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          +T+S+L+  +S+        L  KD+   V T+ + + ++  +G  I+I  F +F +  +
Sbjct: 1  MTKSELIARLSERLAERNSQLVYKDAELAVKTILDAMANNLAQGSRIEIRGFGSFDLNYR 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            RVGRN ++   V +  + V  FKA   L++R+
Sbjct: 61 PPRVGRNPKSGASVSVPEKYVPHFKAGKELRERV 94


>gi|126663449|ref|ZP_01734446.1| DNA-binding protein HU [Flavobacteria bacterium BAL38]
 gi|126624397|gb|EAZ95088.1| DNA-binding protein HU [Flavobacteria bacterium BAL38]
          Length = 91

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++   G+++  +   + +  + +  +  +G  + +  F ++ V ++ +R G
Sbjct: 1  MNKSELIDAMAASAGITKAAAKLALESFLSNVEGTLNKGGRVSLVGFGSWSVSKRAARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + +KI  + VV FKA + L+  +  
Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGAELEGAVNK 91


>gi|123441853|ref|YP_001005836.1| integration host factor subunit beta [Yersinia enterocolitica
          subsp. enterocolitica 8081]
 gi|332162205|ref|YP_004298782.1| integration host factor subunit beta [Yersinia enterocolitica
          subsp. palearctica 105.5R(r)]
 gi|166975896|sp|A1JMJ0|IHFB_YERE8 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|122088814|emb|CAL11620.1| integration host factor beta-subunit [Yersinia enterocolitica
          subsp. enterocolitica 8081]
 gi|325666435|gb|ADZ43079.1| integration host factor subunit beta [Yersinia enterocolitica
          subsp. palearctica 105.5R(r)]
 gi|330862895|emb|CBX73032.1| integration host factor subunit beta [Yersinia enterocolitica
          W22703]
          Length = 94

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +   GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLAGQQSHVPTKVVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGAKVELEGKYVPHFKPGKELRDRAN 91


>gi|237801808|ref|ZP_04590269.1| integration host factor, beta subunit, putative [Pseudomonas
          syringae pv. oryzae str. 1_6]
 gi|331024667|gb|EGI04723.1| integration host factor, beta subunit, putative [Pseudomonas
          syringae pv. oryzae str. 1_6]
          Length = 91

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + ++  +I+++  +++  + + +  +  EI  +  R E++ +  F TF  + +G+R G
Sbjct: 1  MRKPEVAAAIAEKADITKDQAKKVLDAILEEITGALHRKESVTLVGFGTFLQRHRGARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT + VKI     V FK    LK  + 
Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKSLKDSVN 90


>gi|149927320|ref|ZP_01915576.1| DNA-binding protein Hu-beta [Limnobacter sp. MED105]
 gi|149824034|gb|EDM83257.1| DNA-binding protein Hu-beta [Limnobacter sp. MED105]
          Length = 98

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L+ +I+ +   S+  + + +    + +      G+ + +  F TF    + +R G
Sbjct: 1   MNKTELIDAIATKSECSKAAAGKMLDAFIDTVSQQMADGDKVVLVGFGTFQTGARAAREG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           RN +T + +KI    V  F     LK ++      +K
Sbjct: 61  RNPRTGETIKIAAAVVPKFTPGQGLKTKVNTKPAKKK 97


>gi|30249908|ref|NP_841978.1| histone-like DNA-binding protein [Nitrosomonas europaea ATCC 19718]
 gi|81722152|sp|Q82TD7|IHFB_NITEU RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|30180945|emb|CAD85872.1| Bacterial histone-like DNA-binding protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 105

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 1/98 (1%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+S+L+  +++ F  L  KD+   V  + + +  S  RGE I+I  F +F +  + SRV
Sbjct: 1   MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLSRGERIEIRGFGSFDLNYRPSRV 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GRN ++ ++V +  + V  FKA   +++ I    +  K
Sbjct: 61  GRNPKSGEKVHVPEKYVPHFKAGKKMRELIDSGPKQHK 98


>gi|238789316|ref|ZP_04633103.1| Integration host factor subunit beta [Yersinia frederiksenii ATCC
          33641]
 gi|238722648|gb|EEQ14301.1| Integration host factor subunit beta [Yersinia frederiksenii ATCC
          33641]
          Length = 94

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +   GE I+I  F +F +  +  RV
Sbjct: 1  MTKSELIERLAGQQSHVPAKVVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V++D + V  FK    L+ R  
Sbjct: 61 GRNPKTGTKVELDGKYVPHFKPGKELRDRAN 91


>gi|226952951|ref|ZP_03823415.1| integration host factor (IHF),beta subunit, site specific
          recombination [Acinetobacter sp. ATCC 27244]
 gi|294650533|ref|ZP_06727890.1| integration host factor subunit beta [Acinetobacter haemolyticus
          ATCC 19194]
 gi|226836272|gb|EEH68655.1| integration host factor (IHF),beta subunit, site specific
          recombination [Acinetobacter sp. ATCC 27244]
 gi|292823530|gb|EFF82376.1| integration host factor subunit beta [Acinetobacter haemolyticus
          ATCC 19194]
          Length = 100

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 2  SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          ++ + +SDL++ I+ K   L+       V  + +++ ++   G+ I+I  F +F +  + 
Sbjct: 3  TEALNKSDLIERIALKNPHLAEPLVEDAVKIMIDQMIEALSNGDRIEIRGFGSFALHHRE 62

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R+GRN +T + V +  + V  FK    L+  + + 
Sbjct: 63 PRLGRNPKTGKAVDVAAKAVPHFKPGKALRDAVNES 98


>gi|212696155|ref|ZP_03304283.1| hypothetical protein ANHYDRO_00691 [Anaerococcus hydrogenalis DSM
          7454]
 gi|325846494|ref|ZP_08169409.1| DNA-binding protein HU-beta [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|212676784|gb|EEB36391.1| hypothetical protein ANHYDRO_00691 [Anaerococcus hydrogenalis DSM
          7454]
 gi|325481252|gb|EGC84293.1| DNA-binding protein HU-beta [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
          Length = 93

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +IS++ GL + ++ R +      + +S  + E +++  F TF  + + +R G
Sbjct: 1  MNKSELLVNISEKSGLKKVEAERALNAFIETVTESLQKEEKVQLVGFGTFETRDRKAREG 60

Query: 65 RNLQTN-QEVKIDPRRVVVFKASSILKKRIMD 95
          RN +   + +KI   +  VFKA   LK+ + +
Sbjct: 61 RNPRKPDEVIKIPASKAPVFKAGKTLKEAVNN 92


>gi|303256838|ref|ZP_07342852.1| integration host factor, beta subunit [Burkholderiales bacterium
          1_1_47]
 gi|330998915|ref|ZP_08322642.1| integration host factor, beta subunit [Parasutterella
          excrementihominis YIT 11859]
 gi|302860329|gb|EFL83406.1| integration host factor, beta subunit [Burkholderiales bacterium
          1_1_47]
 gi|329576129|gb|EGG57648.1| integration host factor, beta subunit [Parasutterella
          excrementihominis YIT 11859]
          Length = 100

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 50/96 (52%), Gaps = 5/96 (5%)

Query: 5  ITRSDLVKSISKEF-----GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          +T+S+L+  ++ +       L+ +D    V ++ N +  +  +G  I+I  F +F +  +
Sbjct: 1  MTKSELIALLAADPAVIGNHLTARDVDDAVNSILNAMTAALAQGSRIEIRGFGSFSLNYR 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            RVGRN ++   V++  + V  FKA   +++R+  
Sbjct: 61 PPRVGRNPKSGDTVEVPAKIVPHFKAGKEMRERVDK 96


>gi|226939799|ref|YP_002794872.1| integration host factor, beta subunit [Laribacter hongkongensis
          HLHK9]
 gi|254803536|sp|C1D546|IHFB_LARHH RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226714725|gb|ACO73863.1| integration host factor, beta subunit [Laribacter hongkongensis
          HLHK9]
          Length = 99

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  +++    L  KD+   V T+ + +  S   G+ I+I  F +F +  +  R 
Sbjct: 1  MTKSELIARLAERYPHLVAKDTELAVKTILDAMAVSLASGQRIEIRGFGSFDLNYRPPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++   V +  + V  FKA   L++R+
Sbjct: 61 GRNPKSGSSVHVPEKFVPHFKAGKELRERV 90


>gi|92115364|ref|YP_575292.1| histone-like DNA-binding protein [Chromohalobacter salexigens DSM
          3043]
 gi|91798454|gb|ABE60593.1| histone-like DNA-binding protein [Chromohalobacter salexigens DSM
          3043]
          Length = 90

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L  +I++   LS+  +++ +  + +EI  +  +G+ + +  F  F V+++ +R G
Sbjct: 1  MRKPELAAAIAERADLSKDKASQVLNVILDEITGTVSKGQDVSLIGFGAFTVRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT + + I   + V FK    LK  + 
Sbjct: 61 KNPQTGKPLTIPASKTVAFKPGKALKDAVK 90


>gi|46202467|ref|ZP_00208527.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magnetotacticum MS-1]
          Length = 92

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++    +++ D+   +  +F  I  +   G+ +++  F TF V  + +R G
Sbjct: 1  MNKSELIAAVADGAKMTKADAGNAIDAVFAAITAAMKSGDDVRLVGFGTFSVSARPAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + + I   +   F A   LK  I  
Sbjct: 61 RNPQTGKALTIAASKSAKFTAGKSLKDTING 91


>gi|298368578|ref|ZP_06979896.1| integration host factor, beta subunit [Neisseria sp. oral taxon
          014 str. F0314]
 gi|298282581|gb|EFI24068.1| integration host factor, beta subunit [Neisseria sp. oral taxon
          014 str. F0314]
          Length = 104

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 6/95 (6%)

Query: 5  ITRSDLVKSISK------EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          +T+S+L+  +++         L  KD    V  L + +  S  RG+ I+I  F +F +  
Sbjct: 1  MTKSELMVRLAEVFAEKNGTHLMAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          + +R+GRN +T + V++  + V  FK    L++R+
Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERV 95


>gi|257074499|ref|YP_003162896.1| integration host factor, beta subunit [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
 gi|257048720|gb|ACV37905.1| integration host factor, beta subunit [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
          Length = 95

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRS+L+  I ++   L+ KD    V  +F  + ++   GE I+I  F +F +  +  R+
Sbjct: 1  MTRSELIAQITARSAALTVKDVETAVKAIFEGMTETLANGERIEIRGFGSFRLAYRPPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN  T   V +  + V  FKA   L  R+  D
Sbjct: 61 GRNPMTGDTVPVPAKAVPHFKAGRELAARVNSD 93


>gi|303326015|ref|ZP_07356458.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3]
 gi|302863931|gb|EFL86862.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3]
          Length = 91

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++LV+ I  + GL ++  +   +  +   + ++   GE++  + F +F V  + +R 
Sbjct: 1  MTKAELVEKIHAKAGLPTKAKAEEALDAVVASLREALADGESVTFTGFGSFKVVARAARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I   +V  F     LK  I 
Sbjct: 61 GRNPRTGKEITIPASKVAKFTPGKGLKDAIK 91


>gi|187729724|ref|YP_001837313.1| integration host factor subunit A-like protein [Acidithiobacillus
          caldus]
 gi|167782109|gb|ACA00180.1| integration host factor subunit A-like protein [Acidithiobacillus
          caldus]
          Length = 112

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 49/87 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+TR DL   ++   G +  ++   V   F++I  +  +GE +K+S F  F ++ K +R 
Sbjct: 2  TVTRKDLAYYLADTLGFTVTEARTIVDRFFDQIRQTLAQGEEVKLSGFGNFVLRDKRARP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T   V+I  RRVV F AS  LK
Sbjct: 62 GRNPKTKVPVEITARRVVTFHASQSLK 88


>gi|329850595|ref|ZP_08265440.1| integration host factor subunit alpha [Asticcacaulis biprosthecum
          C19]
 gi|328840910|gb|EGF90481.1| integration host factor subunit alpha [Asticcacaulis biprosthecum
          C19]
          Length = 100

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 60/92 (65%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          S+T+TR++L + +  E GL R++    V    + + D+  RGE +K+S F  F V++K +
Sbjct: 3  SQTLTRAELFEDVHNELGLPRQECAAIVERTLDLVVDALERGEMVKLSGFGVFQVREKNA 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RVGRN +T +   IDPR+V+ F+AS I+K R+
Sbjct: 63 RVGRNPKTGKPAAIDPRKVISFRASQIMKARV 94


>gi|51245274|ref|YP_065158.1| integration host factor, alpha subunit [Desulfotalea psychrophila
           LSv54]
 gi|50876311|emb|CAG36151.1| related to integration host factor, alpha subunit [Desulfotalea
           psychrophila LSv54]
          Length = 103

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 53/91 (58%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +TR ++ + ++ + G S+   +  V +   ++ D+ + GE+IK+  F TF V+ K  R G
Sbjct: 13  LTRKEIAEELTGQLGYSQNICSEIVDSFLGKMKDALIEGESIKLVHFGTFTVRDKAPRTG 72

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN +T + + I  R+ V F+ S  L++++ +
Sbjct: 73  RNPRTGEPITITKRQAVSFRPSKKLREQVNE 103


>gi|194364617|ref|YP_002027227.1| histone family protein DNA-binding protein [Stenotrophomonas
          maltophilia R551-3]
 gi|254523802|ref|ZP_05135857.1| DNA-binding protein HU [Stenotrophomonas sp. SKA14]
 gi|194347421|gb|ACF50544.1| histone family protein DNA-binding protein [Stenotrophomonas
          maltophilia R551-3]
 gi|219721393|gb|EED39918.1| DNA-binding protein HU [Stenotrophomonas sp. SKA14]
          Length = 90

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   L++ +S+R V  +   +  +   G+A+ +  F TF V+ + +R G
Sbjct: 1  MNKTELIDAVAEAADLTKAESSRAVDAVVAAVTKALKDGDAVTLVGFGTFQVRDRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   +   FKA   LK  + 
Sbjct: 61 RNPKTGDTIKIAASKNPSFKAGKALKDAVN 90


>gi|317056256|ref|YP_004104723.1| histone family protein DNA-binding protein [Ruminococcus albus 7]
 gi|315448525|gb|ADU22089.1| histone family protein DNA-binding protein [Ruminococcus albus 7]
          Length = 92

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+++ G S+K++ + + T+ + I  +   GE + +  F TF V+ + ++V 
Sbjct: 1  MNKAELINVIAEKGGYSKKEADKALATVLDSITGALENGEKVTLVGFGTFEVRDRAAKVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N  T   V +  R+V  FKA S LK  +  
Sbjct: 61 MNPVTKAPVDVPARKVPAFKAGSALKAVVDK 91


>gi|56552697|ref|YP_163536.1| integration host factor subunit beta [Zymomonas mobilis subsp.
          mobilis ZM4]
 gi|241762613|ref|ZP_04760686.1| integration host factor, beta subunit [Zymomonas mobilis subsp.
          mobilis ATCC 10988]
 gi|260753662|ref|YP_003226555.1| integration host factor subunit beta [Zymomonas mobilis subsp.
          mobilis NCIMB 11163]
 gi|56544271|gb|AAV90425.1| integration host factor, beta subunit [Zymomonas mobilis subsp.
          mobilis ZM4]
 gi|241372808|gb|EER62512.1| integration host factor, beta subunit [Zymomonas mobilis subsp.
          mobilis ATCC 10988]
 gi|258553025|gb|ACV75971.1| integration host factor, beta subunit [Zymomonas mobilis subsp.
          mobilis NCIMB 11163]
          Length = 94

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L+++++     LS ++    +   F+ I     +G  ++I  F  F  + + +R+
Sbjct: 1  MIRSELIQTLANDNPELSSEEIEHIIDVFFDGITHHLAKGGRVEIRGFGAFSTRFRDARL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T ++V+++ +RV  FK    +++ +  ++
Sbjct: 61 GRNPRTGEKVEVEAKRVPYFKPGKEIREHLNIEI 94


>gi|258544425|ref|ZP_05704659.1| DNA-binding protein HU-beta [Cardiobacterium hominis ATCC 15826]
 gi|258520314|gb|EEV89173.1| DNA-binding protein HU-beta [Cardiobacterium hominis ATCC 15826]
          Length = 103

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+    +++  + + +  +   + ++  +G+ + +  F TF  +++ +R G
Sbjct: 1  MNKTELVDAIAAAADITKVQAGKALEAVLESVTETLKKGDKVTLIGFGTFETRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E++I       FKA   LK  + 
Sbjct: 61 RNPQTGKEIQIAASITPAFKAGKKLKDALN 90


>gi|220903373|ref|YP_002478685.1| histone family protein DNA-binding protein [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219867672|gb|ACL48007.1| histone family protein DNA-binding protein [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 91

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++LV+ I  + GL ++  +   +  +   + ++   GE++  + F +F V ++ +R 
Sbjct: 1  MTKAELVEKIHAKAGLPTKAKAEEALDAVVAALREALAAGESVTFTGFGSFKVVERAARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  E+ I   +V  F     LK  I 
Sbjct: 61 GRNPRTGMEITIPASKVAKFTPGKGLKDAIK 91


>gi|224370126|ref|YP_002604290.1| Hbp [Desulfobacterium autotrophicum HRM2]
 gi|223692843|gb|ACN16126.1| Hbp [Desulfobacterium autotrophicum HRM2]
          Length = 89

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+  +S+    S+KD+   V  +   + ++    E++ +  F TF   ++ +R G
Sbjct: 1  MNKGDLINKVSEVLN-SKKDAQTAVDCILATVTEALAEKESVTLVGFGTFKTAERKARKG 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT  E+ I  R V  F     LK  + 
Sbjct: 60 RNPQTGNEIDIPARFVPKFIPGKALKDAVK 89


>gi|268609408|ref|ZP_06143135.1| nucleoid protein Hbs [Ruminococcus flavefaciens FD-1]
          Length = 91

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L+ SI+ +   ++KD+   +      I ++   G+ + I+ F TF V+++G +  
Sbjct: 1  MTKTELINSIADKANCTKKDAASALEATLAAIQEALENGDKVSITGFGTFEVRERGEKTC 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T  ++   P +   FKA   LK+ +  
Sbjct: 61 INPKTKAKMVCPPCKAPAFKAGRGLKEAVNK 91


>gi|227820609|ref|YP_002824579.1| integration host factor subunit beta [Sinorhizobium fredii NGR234]
 gi|227339608|gb|ACP23826.1| integration host factor, beta subunit [Sinorhizobium fredii NGR234]
          Length = 125

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 1/97 (1%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV+ ++     L  +D    V  + +EI D+   G  +++  F  F VK + SR 
Sbjct: 26  VIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 85

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           GRN +T   V ++ + V  FK    L++R+   M  R
Sbjct: 86  GRNPRTGDSVFVEEKWVPFFKTGKELRERLNPGMNDR 122


>gi|240136832|ref|YP_002961299.1| integration host factor (IHF), beta subunit, site-specific
           recombination [Methylobacterium extorquens AM1]
 gi|240006796|gb|ACS38022.1| integration host factor (IHF), beta subunit, site-specific
           recombination [Methylobacterium extorquens AM1]
          Length = 102

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 1/101 (0%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV  I+++   L ++D    V  + + I D+  +G+ +++  F  F VK++ +R 
Sbjct: 1   MIKSELVLKIAEQNPHLYQRDVETLVNAILDTIADALAQGDRVELRGFGAFSVKRREARR 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           GRN +T + V +  + + VFK    ++ R+     G +   
Sbjct: 61  GRNPRTGESVAVSEKAIPVFKTGKEMRLRLNRAGIGDEQPS 101


>gi|163849633|ref|YP_001637676.1| integration host factor, beta subunit [Methylobacterium extorquens
           PA1]
 gi|218528183|ref|YP_002418999.1| integration host factor subunit beta [Methylobacterium
           chloromethanicum CM4]
 gi|254558707|ref|YP_003065802.1| integration host factor [Methylobacterium extorquens DM4]
 gi|163661238|gb|ABY28605.1| integration host factor, beta subunit [Methylobacterium extorquens
           PA1]
 gi|218520486|gb|ACK81071.1| integration host factor, beta subunit [Methylobacterium
           chloromethanicum CM4]
 gi|254265985|emb|CAX21735.1| integration host factor (IHF), beta subunit, site-specific
           recombination [Methylobacterium extorquens DM4]
          Length = 102

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 1/100 (1%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV  I+++   L ++D    V  + + I D+  +G+ +++  F  F VK++ +R 
Sbjct: 1   MIKSELVLKIAEQNPHLYQRDVETLVNAILDTIADALAQGDRVELRGFGAFSVKRREARR 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           GRN +T + V +  + + VFK    ++ R+     G +  
Sbjct: 61  GRNPRTGESVAVSEKAIPVFKTGKEMRLRLNRAGIGDEQP 100


>gi|332534858|ref|ZP_08410681.1| DNA-binding protein HU-alpha [Pseudoalteromonas haloplanktis
          ANT/505]
 gi|332035718|gb|EGI72206.1| DNA-binding protein HU-alpha [Pseudoalteromonas haloplanktis
          ANT/505]
          Length = 89

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+++  L++KDS   +++L   I  S   G+ ++I+ F TF +    +R G
Sbjct: 1  MNKAELVAAIAQKSELTKKDSQAALSSLQKVITKSLSEGDQVQINGFGTFALSYYPARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   ++I+     VFK +  LK  +
Sbjct: 61 RNPQTGAAIEIEGANKAVFKPAKALKDLL 89


>gi|154502285|ref|ZP_02039345.1| hypothetical protein RUMGNA_00096 [Ruminococcus gnavus ATCC
          29149]
 gi|153797164|gb|EDN79584.1| hypothetical protein RUMGNA_00096 [Ruminococcus gnavus ATCC
          29149]
          Length = 92

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDL+K+I+++  G++++ +   V    + I D+   G+ ++   F +F V+++  R 
Sbjct: 1  MTRSDLIKTIAEKVDGVTQEKAKEIVAVTLDSIADALTAGDKVQFVGFGSFEVRERAGRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN Q   E+ I+P + V FKA   LK ++ 
Sbjct: 61 GRNPQDGSEIYIEPSKNVKFKAGKELKDKVN 91


>gi|327399206|ref|YP_004340075.1| histone family protein DNA-binding protein [Hippea maritima DSM
          10411]
 gi|327181835|gb|AEA34016.1| histone family protein DNA-binding protein [Hippea maritima DSM
          10411]
          Length = 91

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 54/91 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L++ ++++ G ++  + + +      I D+   GE +  + F TF+V ++ +R+G
Sbjct: 1  MTKAELIEKVAEKTGATKSQTKKVIDAALETIMDAVAAGEKVGFAGFGTFYVSKRSARMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T ++++I+   +  FK   I K+++  
Sbjct: 61 RNPRTGEKLQIEAFNLPSFKCGRIFKEKVNK 91


>gi|303327861|ref|ZP_07358301.1| integration host factor, beta subunit [Desulfovibrio sp.
          3_1_syn3]
 gi|302862222|gb|EFL85156.1| integration host factor, beta subunit [Desulfovibrio sp.
          3_1_syn3]
          Length = 91

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 53/91 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K++++E  +   D++  V T  + +  S + GE I+I  F +F +K+ G   G
Sbjct: 1  MNKSELIKALAEETNIPFDDASLVVNTFIDAMKKSLIAGERIEIRGFGSFKIKEYGGYAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + V + P+R+  F+A   LK+ I  
Sbjct: 61 RNPKTGESVSVIPKRLPFFRAGKELKEFINQ 91


>gi|289643158|ref|ZP_06475287.1| histone family protein DNA-binding protein [Frankia symbiont of
          Datisca glomerata]
 gi|289507050|gb|EFD28020.1| histone family protein DNA-binding protein [Frankia symbiont of
          Datisca glomerata]
          Length = 98

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S LV  I+++    R ++T+ V  +F+ I ++   GE + I+ F  F   ++ +R G
Sbjct: 1  MNKSQLVDRIAQQIEGGRSNATKAVDAVFDAIQEAVSAGEKVTITGFGVFERVERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T + V +    V  F+  S  K  +
Sbjct: 61 RNPATGEPVHVAASVVPKFRPGSEFKASV 89


>gi|261868287|ref|YP_003256209.1| integration host factor subunit beta [Aggregatibacter
          actinomycetemcomitans D11S-1]
 gi|293390072|ref|ZP_06634406.1| integration host factor, beta subunit [Aggregatibacter
          actinomycetemcomitans D7S-1]
 gi|261413619|gb|ACX82990.1| integration host factor, beta subunit [Aggregatibacter
          actinomycetemcomitans D11S-1]
 gi|290950606|gb|EFE00725.1| integration host factor, beta subunit [Aggregatibacter
          actinomycetemcomitans D7S-1]
          Length = 95

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + ++   +  K     V  +  ++      GE I++  F +F +  +  R+
Sbjct: 1  MTKSELIELLVQKNSNIPVKHVEEAVKAILEQMSYVLEHGERIEVRGFGSFSLHCRQPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++VK+D + V  FKA   L++R+
Sbjct: 61 GRNPKTGEQVKLDAKCVPYFKAGKELRERV 90


>gi|308050479|ref|YP_003914045.1| histone family protein DNA-binding protein [Ferrimonas balearica
          DSM 9799]
 gi|307632669|gb|ADN76971.1| histone family protein DNA-binding protein [Ferrimonas balearica
          DSM 9799]
          Length = 96

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 50/91 (54%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++T++DL   +     L   D+   V T F EI  +  +GE +K+S F  FH++ K  R 
Sbjct: 2  SLTKADLTAHLVDHLHLKVTDAKVLVDTFFEEIRHTLEKGEEVKLSGFGVFHLRDKNPRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E +I  RRVV F A   LK R+ 
Sbjct: 62 GRNPKTGEEHEITARRVVTFAAGGKLKGRVA 92


>gi|251792147|ref|YP_003006867.1| integration host factor subunit beta [Aggregatibacter aphrophilus
          NJ8700]
 gi|247533534|gb|ACS96780.1| integration host factor, beta subunit [Aggregatibacter
          aphrophilus NJ8700]
          Length = 94

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + ++   +  K     V  +  ++      GE I++  F +F +  +  R+
Sbjct: 1  MTKSELIELLVQKNSNIPVKHVEEAVKAILEQMSYVLESGERIEVRGFGSFSLHCRQPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++VK++ + V  FKA   L++R+
Sbjct: 61 GRNPKTGEQVKLEAKCVPYFKAGKELRERV 90


>gi|261855928|ref|YP_003263211.1| integration host factor subunit beta [Halothiobacillus
          neapolitanus c2]
 gi|261836397|gb|ACX96164.1| integration host factor, beta subunit [Halothiobacillus
          neapolitanus c2]
          Length = 101

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  ++     LS +D    V  + +E+  S  RG+ I+I  F +F +  +  R+
Sbjct: 1  MTKSELIDRLADRQKYLSIRDIDTSVKLMLDEMISSMSRGDRIEIRGFGSFSLNYRKPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN ++ + V +D + V  FK    L++R+ +
Sbjct: 61 GRNPKSGESVALDSKYVPHFKPGKELRERVNE 92


>gi|260913658|ref|ZP_05920134.1| integration host factor subunit beta [Pasteurella dagmatis ATCC
          43325]
 gi|260632197|gb|EEX50372.1| integration host factor subunit beta [Pasteurella dagmatis ATCC
          43325]
          Length = 94

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + ++   +S KD    V  + +++  +   G+ I++  F +F +  +  R+
Sbjct: 1  MTKSELIERLVQKHPSISAKDVENSVKEILDQMSFALENGKRIEVRGFGSFSLHYRQPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++VK+D + V  FKA   L++R+
Sbjct: 61 GRNPKTGEQVKLDAKSVPHFKAGKELRERV 90


>gi|162447729|ref|YP_001620861.1| DNA binding protein [Acholeplasma laidlawii PG-8A]
 gi|161985836|gb|ABX81485.1| DNA binding protein, histone-like protein [Acholeplasma laidlawii
          PG-8A]
          Length = 90

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  ++ +  +++  + + V +  + + ++  + E + ++ F TF V+ + +R G
Sbjct: 1  MNKTELVALVADKAEVTQAMAEKVVNSFVDVVTETLSKDEKVVVTGFGTFEVRNRVARRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N +T +E+ +  ++   FKA  +LK  + 
Sbjct: 61 KNPRTGEEIIVPAQKTPAFKAGKLLKDAVK 90


>gi|21672326|ref|NP_660393.1| DNA-binding protein HU-alpha [Buchnera aphidicola str. Sg
          (Schizaphis graminum)]
 gi|25008343|sp|Q8KA69|DBH_BUCAP RecName: Full=DNA-binding protein HU
 gi|21622927|gb|AAM67604.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. Sg
          (Schizaphis graminum)]
          Length = 90

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+K ISK+  LS+      +  + + I +S  +GE+++I  F TF V  + SR G
Sbjct: 1  MNKTQLIKIISKQSNLSKIQIKSTLEKILSAIIESLKKGESVQIVGFGTFKVNSRASRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+ I   +V  F +   LK  I 
Sbjct: 61 RNPQTGKEIIIPATKVPSFISGKTLKNAIK 90


>gi|312194920|ref|YP_004014981.1| histone family protein DNA-binding protein [Frankia sp. EuI1c]
 gi|311226256|gb|ADP79111.1| histone family protein DNA-binding protein [Frankia sp. EuI1c]
          Length = 93

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 45/92 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S LV  I+++    R ++T+ V  +F+ I ++   GE + I+ F  F   ++  R G
Sbjct: 1  MNKSQLVDRIAQQIEGGRSNATKAVDAVFHAIQEAVSAGEKVTITGFGVFERVERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN  T + V +    V  F+  S  K  +  +
Sbjct: 61 RNPATGEPVHVPASVVPKFRPGSEFKSSVSSN 92


>gi|302668930|ref|YP_003832755.1| DNA-binding protein [Butyrivibrio proteoclasticus B316]
 gi|302397270|gb|ADL36173.1| DNA-binding protein [Butyrivibrio proteoclasticus B316]
          Length = 92

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++K  GLS+KD+ + +  L   +     +   +++  F TF   ++ +R G
Sbjct: 1  MNKTELIDAMAKATGLSKKDAGKALDALTGTVSKELKKKGKVQLVGFGTFETVKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +N QT   +KI       FKA   LK  +  
Sbjct: 61 KNPQTGAAIKIPASIAPKFKAGKALKDAVNK 91


>gi|312114064|ref|YP_004011660.1| integration host factor, subunit alpha [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311219193|gb|ADP70561.1| integration host factor, alpha subunit [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 233

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/97 (44%), Positives = 65/97 (67%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            KT+TR+DL +++ ++ GL R ++   V  +  +I  +  RGE IK+SSF +F ++QK  
Sbjct: 5   GKTLTRADLAEAVFEKVGLPRNEAAELVELVLKQIVYALERGEPIKLSSFGSFGLRQKSE 64

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           RVGRN +T + V I PRRV+VFKAS+I+K RI   + 
Sbjct: 65  RVGRNPKTGEIVPITPRRVIVFKASNIMKDRINAGLA 101


>gi|86742300|ref|YP_482700.1| histone-like DNA-binding protein [Frankia sp. CcI3]
 gi|86569162|gb|ABD12971.1| histone-like DNA-binding protein [Frankia sp. CcI3]
          Length = 94

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S LV  I+++    R ++T+ V  +F+ I ++   GE + I+ F  F   ++ +R G
Sbjct: 1  MNKSQLVDRIAQQIEGGRSNATKAVDAVFDAIQEAVASGEKVTITGFGVFERVERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T + V +    V  F+  S  K  +
Sbjct: 61 RNPATGEPVHVAASVVPKFRPGSEFKSSV 89


>gi|262372481|ref|ZP_06065760.1| integration host factor, beta subunit [Acinetobacter junii SH205]
 gi|262312506|gb|EEY93591.1| integration host factor, beta subunit [Acinetobacter junii SH205]
          Length = 100

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 51/98 (52%), Gaps = 1/98 (1%)

Query: 2   SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           ++ + +SDL++ I+ K   L+       V  + +++ ++   G+ I+I  F +F +  + 
Sbjct: 3   TEALNKSDLIERIALKNPHLAEPLVEDAVKIMIDQMIEALSSGDRIEIRGFGSFALHHRE 62

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            R+GRN +T + V +  + V  FK    L+  + + ++
Sbjct: 63  PRLGRNPKTGKAVDVAAKAVPHFKPGKALRDAVNESIK 100


>gi|111225184|ref|YP_715978.1| DNA-binding protein HU-beta, NS1 (HU-1) [Frankia alni ACN14a]
 gi|111152716|emb|CAJ64459.1| DNA-binding protein HU-beta, NS1 (HU-1) [Frankia alni ACN14a]
          Length = 94

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S LV  I+++    R ++T+ V  +F+ I ++   GE + I+ F  F   ++ +R G
Sbjct: 1  MNKSQLVDRIAQQIEGGRSNATKAVDAVFDAIQEAVASGEKVTITGFGVFERVERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T + V +    V  F+  S  K  +
Sbjct: 61 RNPATGEPVHVAASVVPKFRPGSEFKSSV 89


>gi|115380144|ref|ZP_01467177.1| integration host factor, beta subunit [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823549|ref|YP_003955907.1| integration host factor subunit beta [Stigmatella aurantiaca
           DW4/3-1]
 gi|115362849|gb|EAU62051.1| integration host factor, beta subunit [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396621|gb|ADO74080.1| Integration host factor, beta subunit [Stigmatella aurantiaca
           DW4/3-1]
          Length = 113

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 2/107 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +SDL+  +  + G+++K +   V T+F  + ++  RGE I+I     FHVK      G
Sbjct: 1   MLKSDLINILVTKRGVTQKQAEATVETIFESMKEALCRGENIEIRGLGAFHVKNYQGYQG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111
           RN +T Q + + P+R ++F+    L+ R+       +  + D++ PS
Sbjct: 61  RNPKTGQVIPVKPKRGLLFRTGKELRDRVN--RPAAQSAQPDLSDPS 105


>gi|114776643|ref|ZP_01451686.1| DNA-binding protein HU [Mariprofundus ferrooxydans PV-1]
 gi|114552729|gb|EAU55160.1| DNA-binding protein HU [Mariprofundus ferrooxydans PV-1]
          Length = 102

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 40/92 (43%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++   GLS+  +   V      I +    G  + +  F  F V  + +R  
Sbjct: 1  MNKTNLINHVASSAGLSKSAAGDAVEAAIGGIINVLSDGGTVSLVGFGRFSVIARAARTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T + +++      +FK S  LK  +   
Sbjct: 61 RNPRTGETIEVAASNAPIFKPSKALKDAVKQG 92


>gi|46580273|ref|YP_011081.1| DNA-binding protein HU subunit beta [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|120602345|ref|YP_966745.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris DP4]
 gi|46449690|gb|AAS96340.1| DNA-binding protein HU, beta subunit, putative [Desulfovibrio
          vulgaris str. Hildenborough]
 gi|120562574|gb|ABM28318.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris DP4]
 gi|311233745|gb|ADP86599.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris RCH1]
          Length = 93

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 56/91 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++++S+E  +  +++T  V T  + + DS + G+ ++I  F +F +K  G   G
Sbjct: 1  MNKSELIRTLSEETNIPIEEATIVVNTFIDNMKDSLLAGDRVEIRGFGSFKIKDYGGYSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + V ++P+R+  F+A   LK+ + +
Sbjct: 61 RNPKTGKMVDVEPKRLPFFRAGKELKEFLNE 91


>gi|119489368|ref|ZP_01622148.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106]
 gi|119454641|gb|EAW35787.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106]
          Length = 98

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 52/97 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + + +LV ++++   +++K +   +T   + + ++  R + + +  F +F  +++ +R G
Sbjct: 1   MNKGELVDAVAERASVTKKQADAVLTAALDTVMEAVSRNDKVTLVGFGSFESRERKAREG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           RN +T +++ I   RV  F A  + K+++      ++
Sbjct: 61  RNPKTGEKMDIPATRVPAFSAGKLFKEKVASKATTKE 97


>gi|220922182|ref|YP_002497483.1| integration host factor subunit beta [Methylobacterium nodulans ORS
           2060]
 gi|219946788|gb|ACL57180.1| integration host factor, beta subunit [Methylobacterium nodulans
           ORS 2060]
          Length = 106

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 1/102 (0%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV  I+++   L ++D    V  + + I D+  RG+ +++  F  F VK++ +R 
Sbjct: 1   MIKSELVLKIAEQNPHLYQRDVENIVNAILDTIADALARGDRVELRGFGAFSVKRREARR 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           GRN +T   V +  + + VFK    ++ R+     G +  + 
Sbjct: 61  GRNPRTGAAVAVAEKAIPVFKTGKEMRLRLNAAGIGSEAREP 102


>gi|145630846|ref|ZP_01786623.1| integration host factor beta-subunit [Haemophilus influenzae
          R3021]
 gi|145639202|ref|ZP_01794809.1| integration host factor beta-subunit [Haemophilus influenzae
          PittII]
 gi|229845052|ref|ZP_04465188.1| hypothetical protein CGSHi6P18H1_00834 [Haemophilus influenzae
          6P18H1]
 gi|229846876|ref|ZP_04466983.1| hypothetical protein CGSHi7P49H1_02608 [Haemophilus influenzae
          7P49H1]
 gi|260582649|ref|ZP_05850438.1| integration host factor, beta subunit [Haemophilus influenzae
          NT127]
 gi|144983506|gb|EDJ90974.1| integration host factor beta-subunit [Haemophilus influenzae
          R3021]
 gi|145271764|gb|EDK11674.1| integration host factor beta-subunit [Haemophilus influenzae
          PittII]
 gi|229810365|gb|EEP46084.1| hypothetical protein CGSHi7P49H1_02608 [Haemophilus influenzae
          7P49H1]
 gi|229812024|gb|EEP47717.1| hypothetical protein CGSHi6P18H1_00834 [Haemophilus influenzae
          6P18H1]
 gi|260094321|gb|EEW78220.1| integration host factor, beta subunit [Haemophilus influenzae
          NT127]
 gi|309750778|gb|ADO80762.1| Integration host factor, beta-subunit [Haemophilus influenzae
          R2866]
          Length = 94

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + +K+  L  K+    V  +   I  S   G+ ++I  F +F +  +  R+
Sbjct: 1  MTKSELIEKLLAKQPTLPAKEIENMVKDILEFISQSLENGDRVEIRGFGSFSLHHRQPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  + V  FKA   LK R+
Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARV 90


>gi|116748869|ref|YP_845556.1| histone family protein DNA-binding protein [Syntrophobacter
          fumaroxidans MPOB]
 gi|116697933|gb|ABK17121.1| histone family protein DNA-binding protein [Syntrophobacter
          fumaroxidans MPOB]
          Length = 90

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  ++   G+++  + + +  L   +  +  +G+ I +  F TF V ++  R G
Sbjct: 1  MTKADLVIKMADGTGITKAAAEKALNNLIAAVSAALAKGDKITLVGFGTFDVAKRAKREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T Q + I   +VV FKA + L+  I 
Sbjct: 61 RNPRTGQAITIPASKVVRFKAGNKLRDAIK 90


>gi|238022457|ref|ZP_04602883.1| hypothetical protein GCWU000324_02365 [Kingella oralis ATCC 51147]
 gi|237867071|gb|EEP68113.1| hypothetical protein GCWU000324_02365 [Kingella oralis ATCC 51147]
          Length = 102

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 5   ITRSDLVKSISK-------EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
           +T+S+L+  +++          L  KD    V  L + +  S  +G+ I+I  F +F + 
Sbjct: 1   MTKSELMARLAELFIENNEGTELQAKDIEYGVKVLVDTMTRSLAKGQRIEIRGFGSFDLN 60

Query: 58  QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
            +  RVGRN +T + V++  +RV  FK    L++R+      
Sbjct: 61  YRPPRVGRNPKTGERVEVPAKRVPHFKPGKELRERVDQAFAA 102


>gi|95929490|ref|ZP_01312233.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM
          684]
 gi|95134606|gb|EAT16262.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM
          684]
          Length = 94

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S L++ + +    L++K+S   V T+F+ I  + + G+ ++I  F +F ++++ +R 
Sbjct: 1  MTKSQLIERLMESTSDLNKKESELVVNTIFDSIGSALIGGDRVEIRGFGSFSIREREARQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN ++   + I  ++   FK    L++R+
Sbjct: 61 ARNPKSGNLINIPSKKTPFFKTGKELRERV 90


>gi|94987336|ref|YP_595269.1| nucleoid DNA-binding protein [Lawsonia intracellularis
          PHE/MN1-00]
 gi|94731585|emb|CAJ54948.1| Bacterial nucleoid DNA-binding protein [Lawsonia intracellularis
          PHE/MN1-00]
          Length = 91

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 55/90 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LVKS+S++  +S  ++T  V T  + + +S ++G  +++  F +F VK+     G
Sbjct: 1  MNKSELVKSLSEQANISLDEATLVVNTFVDSMKESLLKGGRVEVRGFGSFKVKEYEGYAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T ++V + P+R+  F+A   LK+ + 
Sbjct: 61 RNPRTGEKVVVQPKRLPFFRAGKELKEYLN 90


>gi|297617754|ref|YP_003702913.1| histone family protein DNA-binding protein [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145591|gb|ADI02348.1| histone family protein DNA-binding protein [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 112

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 56/100 (56%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++LVKS++++ G+++K++ + +      I ++   G+ ++I  F TF V+ + +R  
Sbjct: 1   MNKAELVKSLAEKAGVTQKEAGKVLDAAVASIQEALAGGDKVQIIGFGTFEVRNRRARKV 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
            +  T +E+++   RV  FK    LK+ ++     +K  K
Sbjct: 61  ISPATGEEIEVPATRVPAFKPGKSLKEAVVIKEEPKKTGK 100


>gi|209695658|ref|YP_002263587.1| integration host factor subunit beta [Aliivibrio salmonicida
          LFI1238]
 gi|226709768|sp|B6EIY1|IHFB_ALISL RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|208009610|emb|CAQ79906.1| integration host factor beta-subunit [Aliivibrio salmonicida
          LFI1238]
          Length = 93

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + SK+  LS K     V  +  ++  +   G+ I+I  F +F +  +  R+
Sbjct: 1  MTKSELIEQLCSKKPQLSAKQVEDTVKEVLEQMATTLEGGDRIEIRGFGSFSLHYREPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V++D + V  FK    L++R+ 
Sbjct: 61 GRNPKTGDKVELDGKFVPHFKPGKELRERVN 91


>gi|312113689|ref|YP_004011285.1| integration host factor subunit beta [Rhodomicrobium vannielii
          ATCC 17100]
 gi|311218818|gb|ADP70186.1| integration host factor, beta subunit [Rhodomicrobium vannielii
          ATCC 17100]
          Length = 110

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ ++     L  +D  + V  +F EI  +  +G+ +++  F  F VK + +RV
Sbjct: 1  MIKSELIEKLAATNPHLMHRDVEKIVNVIFEEITGALTKGDRVELRGFGAFSVKHRPARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V +  + V  FK    L+ R+ 
Sbjct: 61 GRNPRTGDQVSVPEKFVPYFKTGKELRIRLN 91


>gi|90406779|ref|ZP_01214971.1| putative integration host factor, beta subunit [Psychromonas sp.
          CNPT3]
 gi|90312016|gb|EAS40109.1| putative integration host factor, beta subunit [Psychromonas sp.
          CNPT3]
          Length = 95

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+SDL++ ++ + F LS ++    V      + +S  +GE I++  F +F +  +  R+
Sbjct: 1  MTKSDLIEKLTNKHFQLSVREVEDSVKETLQLMTNSLAQGERIEVRGFGSFSLHYRAPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V++  + V  FK    L++R+ 
Sbjct: 61 GRNPKTGDKVELGGKYVPHFKPGKELRERVN 91


>gi|292905267|ref|YP_003541138.1| Histone-like DNA-binding protein [Anabaena variabilis ATCC 29413]
 gi|75705005|gb|ABA24680.1| Histone-like DNA-binding protein [Anabaena variabilis ATCC 29413]
          Length = 97

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+++++ +  +S+K +   +    + I ++   G  + +  F +F  + +  R G
Sbjct: 1  MNKAELIQAVAAKANVSQKQAETVLNATTDTIVETVANGGKVILVGFGSFEARARKEREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +TN+++ I    V  F      K  +
Sbjct: 61 RNPKTNEKMIIPATTVPAFSPGKHFKTEV 89


>gi|317476442|ref|ZP_07935691.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316907468|gb|EFV29173.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 88

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 47/85 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++ E GLS+ DS R +      +  +   G+ + +  F TF V ++  RVG
Sbjct: 1  MNKSELISAMAAEAGLSKADSKRALDAFIASVTTALKAGDKVALVGFGTFSVTERAGRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N  T + ++I  ++V  F+A S L
Sbjct: 61 INPATKKPIQIPAKKVAKFRAGSEL 85


>gi|103486981|ref|YP_616542.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256]
 gi|98977058|gb|ABF53209.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256]
          Length = 92

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+LV+ I+ +   L  ++  R V T F+ I D    G  +++  F  F  + + SR 
Sbjct: 1  MIRSELVQKIANENSDLRVEEVERIVDTFFDSIVDQLATGGRVELRGFGAFSTRARESRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T   V++  ++V  FK    +++R+ 
Sbjct: 61 GRNPRTGAAVEVKAKKVPYFKPGKEMRERLN 91


>gi|309792618|ref|ZP_07687079.1| histone family protein DNA-binding protein [Oscillochloris
          trichoides DG6]
 gi|308225340|gb|EFO79107.1| histone family protein DNA-binding protein [Oscillochloris
          trichoides DG6]
          Length = 91

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 53/91 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D +K+++++ G+S+K++   V +  + I ++  RGE + ++ F TF V+ + +R G
Sbjct: 1  MQKTDFIKAVAEKAGVSQKETKLVVDSALDVITEALARGEKVTLTGFGTFEVRSRRAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N QT  ++ I   +   F ASS LK  +  
Sbjct: 61 VNPQTRDKIHIPETKTPGFSASSTLKDAVKG 91


>gi|256545177|ref|ZP_05472543.1| DNA-binding protein HU [Anaerococcus vaginalis ATCC 51170]
 gi|256399218|gb|EEU12829.1| DNA-binding protein HU [Anaerococcus vaginalis ATCC 51170]
          Length = 93

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +IS++ GL + ++ R +      + +S  + E +++  F TF  + + +R G
Sbjct: 1  MNKSELLVNISEKSGLKKVEAERALNAFIETVTESLKKEEKVQLVGFGTFETRDRKAREG 60

Query: 65 RNLQTN-QEVKIDPRRVVVFKASSILKKRIMD 95
          RN +   + +KI   +  VFKA   LK+ + +
Sbjct: 61 RNPRKPDEVIKIPASKAPVFKAGKTLKEAVNN 92


>gi|170748862|ref|YP_001755122.1| integration host factor, beta subunit [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655384|gb|ACB24439.1| integration host factor, beta subunit [Methylobacterium
           radiotolerans JCM 2831]
          Length = 103

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 1/100 (1%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV  I+++   L ++D    V  + + I D+  RG+ +++  F  F VK++ +R 
Sbjct: 1   MIKSELVLKIAEQNPHLYQRDVEILVNAILDTISDALARGDRVELRGFGAFSVKRREARR 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           GRN +T   V +  + + VFK    +++R+     G   +
Sbjct: 61  GRNPRTGAAVAVSEKAIPVFKTGKEMRQRLNAAGIGENAS 100


>gi|325266870|ref|ZP_08133541.1| integration host factor subunit alpha [Kingella denitrificans ATCC
           33394]
 gi|324981611|gb|EGC17252.1| integration host factor subunit alpha [Kingella denitrificans ATCC
           33394]
          Length = 102

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 1/101 (0%)

Query: 4   TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           T+T+++L   + ++   +S+ ++   V   F EI     RGE IKIS F  F ++ K  R
Sbjct: 2   TLTKAELADILVEKVSSVSKTEAKEIVELFFEEIRSVLARGEEIKISGFGNFQLRNKPER 61

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
            GRN +T +EV I  RRVV F AS  LK  +       K  
Sbjct: 62  PGRNPKTGKEVAISARRVVTFHASQKLKGMVEHHSEANKAR 102


>gi|218779503|ref|YP_002430821.1| histone family protein DNA-binding protein [Desulfatibacillum
          alkenivorans AK-01]
 gi|218760887|gb|ACL03353.1| histone family protein DNA-binding protein [Desulfatibacillum
          alkenivorans AK-01]
          Length = 97

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++ +V+ I  + GL  K     V  L   I  S   G+ + IS F  F V+ K  R 
Sbjct: 2  ALTKAQIVEEIHNQLGLPAKQCATMVEDLLEIIKSSLENGDDVLISGFGKFRVRDKSQRR 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          GRN  T   + +D R+VV F  S +L+ RI  + +G
Sbjct: 62 GRNPATGDSIILDARKVVTFTCSGVLRDRINSNEKG 97


>gi|148284257|ref|YP_001248347.1| histone-like DNA-binding protein HU [Orientia tsutsugamushi str.
           Boryong]
 gi|146739696|emb|CAM79506.1| histone-like DNA-binding protein HU [Orientia tsutsugamushi str.
           Boryong]
          Length = 125

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 3   KTITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + + +++ V  I K    +++ D  R +  +   +  +   G  I I  F +F V+ + +
Sbjct: 32  EALNKAEFVNFIHKNNTNMTKADIERALNLILRGVEKAIENGHDINIVGFGSFCVRFRAA 91

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R G N +T  ++ I     VVFK    LK    +
Sbjct: 92  RDGHNPKTGAKIIIPESYQVVFKPGKTLKDACNN 125


>gi|320451084|ref|YP_004203180.1| DNA-binding protein HU 1 [Thermus scotoductus SA-01]
 gi|320151253|gb|ADW22631.1| DNA-binding protein HU 1 [Thermus scotoductus SA-01]
          Length = 97

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 51/93 (54%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+T++DLV  ++   GL +KD    V    +++ ++   G  ++++ F TF V+++ +R
Sbjct: 5  KTVTKADLVDQVAAATGLKKKDVKAAVDAFLSKVEEALASGNKVQLTGFGTFEVRKRKAR 64

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           G    T +++KI   +   FK    LK+++  
Sbjct: 65 TGVKPGTKEKIKIPATQYPAFKPGKALKEKVKK 97


>gi|319936472|ref|ZP_08010888.1| DNA-binding protein HU [Coprobacillus sp. 29_1]
 gi|319808587|gb|EFW05139.1| DNA-binding protein HU [Coprobacillus sp. 29_1]
          Length = 90

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  +S++  L++KD+   V T+F+ + +S + G+ + IS F TF V  +  R G
Sbjct: 1  MNKKELIDIVSQKKDLTKKDAEALVDTVFDTMIESILEGDKVLISGFGTFKVNSRKERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           + +T + + I   + V FK S+ LK  + 
Sbjct: 61 VSPKTKEMMIIPASKTVSFKPSNRLKDAMN 90


>gi|34539986|ref|NP_904465.1| DNA-binding protein HU [Porphyromonas gingivalis W83]
 gi|188994099|ref|YP_001928351.1| DNA-binding protein HU [Porphyromonas gingivalis ATCC 33277]
 gi|34396297|gb|AAQ65364.1| DNA-binding protein HU [Porphyromonas gingivalis W83]
 gi|188593779|dbj|BAG32754.1| DNA-binding protein HU [Porphyromonas gingivalis ATCC 33277]
          Length = 88

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 46/85 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D + +++++  L++ D+ R V      + +    GE I +  F TF V ++ +R G
Sbjct: 1  MNKTDFIAAVAEKANLTKADAQRAVNAFAEVVTEQMNAGEKIALIGFGTFSVSERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N +T + + I  R+VV FK  S L
Sbjct: 61 INPKTKKSISIPARKVVRFKPGSTL 85


>gi|113475301|ref|YP_721362.1| nucleoid protein Hbs [Trichodesmium erythraeum IMS101]
 gi|110166349|gb|ABG50889.1| bacterial nucleoid protein Hbs [Trichodesmium erythraeum IMS101]
          Length = 95

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV  ISK+  +++K +   ++     I D+   G+ + +  F +F  +++ +R G
Sbjct: 1  MNKGELVDEISKKAEVTKKQADAVLSAALEAIMDAVASGDKVTLVGFGSFESRERKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T  +++I    V  F A    K+ + +
Sbjct: 61 RNPKTGDKMEIPETTVPAFSAGKSFKELVAE 91


>gi|158339614|ref|YP_001521003.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
 gi|158309855|gb|ABW31471.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
          Length = 91

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV  I++  G ++K +   +T L   I ++   GE + +  F +F  + + +R G
Sbjct: 1  MNKGELVDVIAENTGATKKQADTILTALTETIMETVSSGEKVILVGFGSFEARDRKARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T +++ I   +  +F A    K+++ D
Sbjct: 61 RNPRTGKKLTIPATKSPIFSAGKTFKEQVKD 91


>gi|268601568|ref|ZP_06135735.1| integration host factor beta-subunit [Neisseria gonorrhoeae
          PID18]
 gi|291043583|ref|ZP_06569299.1| integration host factor subunit beta [Neisseria gonorrhoeae DGI2]
 gi|268585699|gb|EEZ50375.1| integration host factor beta-subunit [Neisseria gonorrhoeae
          PID18]
 gi|291012046|gb|EFE04035.1| integration host factor subunit beta [Neisseria gonorrhoeae DGI2]
          Length = 98

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 6/95 (6%)

Query: 5  ITRSDLVKSISK------EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          +T+S+L+  +++         L  KD    V  L + +  S  RG+ I+I  F +F +  
Sbjct: 1  MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          + +R+GRN +T + V++  + V  FK    L++R+
Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERV 95


>gi|225075202|ref|ZP_03718401.1| hypothetical protein NEIFLAOT_00202 [Neisseria flavescens
          NRL30031/H210]
 gi|241758896|ref|ZP_04757009.1| integration host factor, beta subunit [Neisseria flavescens
          SK114]
 gi|261380193|ref|ZP_05984766.1| integration host factor, beta subunit [Neisseria subflava NJ9703]
 gi|319638404|ref|ZP_07993166.1| integration host factor subunit beta [Neisseria mucosa C102]
 gi|224953377|gb|EEG34586.1| hypothetical protein NEIFLAOT_00202 [Neisseria flavescens
          NRL30031/H210]
 gi|241321104|gb|EER57317.1| integration host factor, beta subunit [Neisseria flavescens
          SK114]
 gi|284797040|gb|EFC52387.1| integration host factor, beta subunit [Neisseria subflava NJ9703]
 gi|317400153|gb|EFV80812.1| integration host factor subunit beta [Neisseria mucosa C102]
          Length = 104

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 6/95 (6%)

Query: 5  ITRSDL----VKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          +T+S+L     +  +++ G  L  KD    V  L + +  S  RG+ I+I  F +F +  
Sbjct: 1  MTKSELMVRLAEVFAEKNGNQLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          + +R+GRN +T + V++  + V  FK    L++R+
Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERV 95


>gi|218437716|ref|YP_002376045.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
          7424]
 gi|307150941|ref|YP_003886325.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
          7822]
 gi|218170444|gb|ACK69177.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
          7424]
 gi|306981169|gb|ADN13050.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
          7822]
          Length = 91

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV  I+    +++K +   +T     I D+   G+ + +  F +F  +++ +R G
Sbjct: 1  MNKGELVDEIASRAMVTKKQADAVLTAAIEAIMDAVSSGDKVTLVGFGSFEARERKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +++ I   +V  F A  + K+++
Sbjct: 61 RNPKTGEKMVIPETKVPAFSAGKLFKEKV 89


>gi|259908918|ref|YP_002649274.1| integration host factor subunit beta [Erwinia pyrifoliae Ep1/96]
 gi|224964540|emb|CAX56050.1| Integration host factor beta-subunit (IHF-beta) [Erwinia
          pyrifoliae Ep1/96]
 gi|283478914|emb|CAY74830.1| Integration host factor beta-subunit (IHF-beta) [Erwinia
          pyrifoliae DSM 12163]
          Length = 95

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +   GE I++  F +F +  +  R 
Sbjct: 1  MTKSELIERLAGQQSHIQAKVVEDAVKEMLEHMATTLSEGERIEVRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91


>gi|119469331|ref|ZP_01612270.1| DNA-binding protein HU-alpha (HU-2) [Alteromonadales bacterium
          TW-7]
 gi|119447195|gb|EAW28464.1| DNA-binding protein HU-alpha (HU-2) [Alteromonadales bacterium
          TW-7]
          Length = 89

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  ++K   L++KDS   +T++   I  S   G+ ++I+ F TF +    +R G
Sbjct: 1  MNKTQLIAEMAKHSELTKKDSQAALTSIQKVITKSLSEGDQVQINGFGTFALSYYPARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I+     VFK +  LK R+
Sbjct: 61 RNPQTGETIEIEGANKAVFKPAKALKDRL 89


>gi|300023466|ref|YP_003756077.1| histone family protein DNA-binding protein [Hyphomicrobium
          denitrificans ATCC 51888]
 gi|299525287|gb|ADJ23756.1| histone family protein DNA-binding protein [Hyphomicrobium
          denitrificans ATCC 51888]
          Length = 90

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++ DL+ +++++  L+++ ++  V  +   I ++   G  ++I  F TF V  + +R G
Sbjct: 1  MSKKDLIDAVARDCELTKEKASGVVDAVLAHIREAMKEGHEVRIPDFGTFKVAARKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T   ++I   RV  F  +  LK  + 
Sbjct: 61 RNPATGMTIQIPASRVPKFTPAKGLKDALN 90


>gi|291287359|ref|YP_003504175.1| histone family protein DNA-binding protein [Denitrovibrio
          acetiphilus DSM 12809]
 gi|290884519|gb|ADD68219.1| histone family protein DNA-binding protein [Denitrovibrio
          acetiphilus DSM 12809]
          Length = 94

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 55/93 (59%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ IS +   L++K     V  +F+ I D+   G+ ++I  F +F +++K S+V
Sbjct: 1  MTKSELIEVISTQNQELTKKQVEFIVNGVFSSIKDALKTGDKVEIRGFGSFKIREKNSKV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T  +V++  + V  FK    +K+ ++  
Sbjct: 61 GRNPKTGDKVEVPSKNVPYFKPGKEIKELLIQA 93


>gi|224826390|ref|ZP_03699492.1| integration host factor, beta subunit [Lutiella nitroferrum 2002]
 gi|224601491|gb|EEG07672.1| integration host factor, beta subunit [Lutiella nitroferrum 2002]
          Length = 104

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query: 5  ITRSDLVKSISK-----EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          +T+S+L+  +++        L  KD+   V T+ + +  S   G+ I+I  F +F +  +
Sbjct: 1  MTKSELIARLAEHLAERNSQLVYKDAELAVKTILDAMAGSLATGQRIEIRGFGSFDLNYR 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            RVGRN ++   V +  + V  FKA   L++R+
Sbjct: 61 PPRVGRNPKSGSSVSVPEKFVPHFKAGKELRERV 94


>gi|158338987|ref|YP_001520164.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
 gi|158309228|gb|ABW30845.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
          Length = 93

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +++ +  +++K +   +T     I +S   GE + +  F +F  +++ +R G
Sbjct: 1  MNKGELVDAVADKASVTKKQADAVLTAALEAIVESVSSGEKVTLVGFGSFEPRERKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  ++KI   +V  F A  + K+++ 
Sbjct: 61 RNPKTGAKMKIPATKVPAFSAGKLFKEKVA 90


>gi|160884102|ref|ZP_02065105.1| hypothetical protein BACOVA_02078 [Bacteroides ovatus ATCC 8483]
 gi|237717231|ref|ZP_04547712.1| DNA-binding protein HU-beta [Bacteroides sp. D1]
 gi|237718986|ref|ZP_04549467.1| DNA-binding protein HU-beta [Bacteroides sp. 2_2_4]
 gi|260173110|ref|ZP_05759522.1| DNA-binding protein HU-beta [Bacteroides sp. D2]
 gi|262405998|ref|ZP_06082548.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22]
 gi|293368714|ref|ZP_06615319.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
 gi|294647974|ref|ZP_06725525.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a]
 gi|294806912|ref|ZP_06765737.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b]
 gi|298480088|ref|ZP_06998287.1| DNA-binding protein HU [Bacteroides sp. D22]
 gi|299144759|ref|ZP_07037827.1| DNA-binding protein HU [Bacteroides sp. 3_1_23]
 gi|315921386|ref|ZP_07917626.1| DNA-binding protein HU-beta [Bacteroides sp. D2]
 gi|156110444|gb|EDO12189.1| hypothetical protein BACOVA_02078 [Bacteroides ovatus ATCC 8483]
 gi|229443214|gb|EEO49005.1| DNA-binding protein HU-beta [Bacteroides sp. D1]
 gi|229451764|gb|EEO57555.1| DNA-binding protein HU-beta [Bacteroides sp. 2_2_4]
 gi|262356873|gb|EEZ05963.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22]
 gi|292636179|gb|EFF54666.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
 gi|292636690|gb|EFF55157.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a]
 gi|294445941|gb|EFG14583.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b]
 gi|295085555|emb|CBK67078.1| bacterial nucleoid protein Hbs [Bacteroides xylanisolvens XB1A]
 gi|298273897|gb|EFI15459.1| DNA-binding protein HU [Bacteroides sp. D22]
 gi|298515250|gb|EFI39131.1| DNA-binding protein HU [Bacteroides sp. 3_1_23]
 gi|313695261|gb|EFS32096.1| DNA-binding protein HU-beta [Bacteroides sp. D2]
          Length = 90

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+ +++ E  +S+ D+ + +      + ++   G+ + +  F TF V ++  R G
Sbjct: 1  MNKSDLISAMAAEAQMSKADAKKALDAFITSVTNAMKAGDKVSLVGFGTFSVSERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T   + I  ++V  FKA + L   + 
Sbjct: 61 INPSTKATITIPAKKVAKFKAGAELSAAVE 90


>gi|156740686|ref|YP_001430815.1| histone family protein DNA-binding protein [Roseiflexus
          castenholzii DSM 13941]
 gi|156232014|gb|ABU56797.1| histone family protein DNA-binding protein [Roseiflexus
          castenholzii DSM 13941]
          Length = 92

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 50/92 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D +K++++    S+K++   V      I ++  RGE + ++ F TF V+Q+ +R G
Sbjct: 1  MQKTDFIKAVAERANRSQKETKEIVDAALEVITEALKRGEKVTLTGFGTFEVRQRQAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N QT  ++ I   R   F ASS LK  + + 
Sbjct: 61 VNPQTRSKIHIPATRTPGFSASSTLKNAVKEG 92


>gi|206973313|ref|ZP_03234235.1| DNA-binding protein HU 1 [Bacillus cereus AH1134]
 gi|206732197|gb|EDZ49397.1| DNA-binding protein HU 1 [Bacillus cereus AH1134]
          Length = 93

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 54/92 (58%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + I +++L K ++++  L +KD      T+ + I ++   GE ++I SF TF V+++ +R
Sbjct: 2  QKINKTELTKVVAEKTELIQKDPVAATQTVLDTITNALANGEKVQILSFCTFEVRERSAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT ++++I   +   FKA   LK+ + 
Sbjct: 62 TGRNPQTGKKMQIAASKAPAFKAGKELKEAVK 93


>gi|332288957|ref|YP_004419809.1| transcriptional regulator HU subunit alpha [Gallibacterium anatis
          UMN179]
 gi|330431853|gb|AEC16912.1| transcriptional regulator HU subunit alpha [Gallibacterium anatis
          UMN179]
          Length = 90

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  I+++  LS+KDS   +      I +S   G+A+++  F TF V Q+  R G
Sbjct: 1  MNKTELVDVIAEKTKLSKKDSKAALEAALEAITESLKAGDAVQLIGFGTFKVNQRQERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI   +V  F +   LK  + 
Sbjct: 61 RNPQTGKEIKIPATKVPAFVSGKALKDAVK 90


>gi|302344119|ref|YP_003808648.1| histone family protein DNA-binding protein [Desulfarculus baarsii
          DSM 2075]
 gi|301640732|gb|ADK86054.1| histone family protein DNA-binding protein [Desulfarculus baarsii
          DSM 2075]
          Length = 92

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+++++K   L+ K +   V TLF  I ++ V+G+ ++I  F +F VK      G
Sbjct: 1  MNKSQLIEALAKAENLTIKKAEMVVNTLFGAIEEALVQGDRVEIRGFGSFKVKNYDGYQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + +++  +++  FK    LK R+
Sbjct: 61 RNPKTGEIIQVGQKKLPFFKVGKELKDRV 89


>gi|117925344|ref|YP_865961.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
 gi|117926106|ref|YP_866723.1| nucleoid protein Hbs [Magnetococcus sp. MC-1]
 gi|117609100|gb|ABK44555.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
 gi|117609862|gb|ABK45317.1| bacterial nucleoid protein Hbs [Magnetococcus sp. MC-1]
          Length = 91

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  ++L K++++  GLS+ ++ + +   F  + D+   G+ + IS F  F + ++ +R G
Sbjct: 1  MNLTELKKAVAESSGLSQANADKAIKATFAAMTDALKGGDGVSISGFGAFQIDERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T QE+KI   + V FKA  +LK  +  
Sbjct: 61 RNPKTGQEIKIAASKNVKFKAGKVLKDAVNG 91


>gi|158523217|ref|YP_001531087.1| histone family protein DNA-binding protein [Desulfococcus
          oleovorans Hxd3]
 gi|158512043|gb|ABW69010.1| histone family protein DNA-binding protein [Desulfococcus
          oleovorans Hxd3]
          Length = 91

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 53/91 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV ++  + G+S+ ++ + V T F+ + D+   GE +++    +F VK+  S  G
Sbjct: 1  MNKLELVTALKDKTGVSKVEAAKIVKTFFDTMADTLATGERVEVRGLCSFFVKEYKSYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T ++V I P+++  FK    LK+RI  
Sbjct: 61 RNPKTGEKVTIAPKKLPFFKCGKELKERING 91


>gi|325663704|ref|ZP_08152108.1| DNA-binding protein HU [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331087225|ref|ZP_08336295.1| DNA-binding protein HU [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325470197|gb|EGC73430.1| DNA-binding protein HU [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330408911|gb|EGG88372.1| DNA-binding protein HU [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 91

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++   +S+KDS + +    + + +   +GE +++  F TF V ++ +R G
Sbjct: 1  MNKTELIAAVAEAAEVSKKDSEKVLKAFVDVVTEELKKGEKVQLVGFGTFEVTERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T + + I   +   FKA   LK  + 
Sbjct: 61 RNPHTKETMMIAACKAPKFKAGKALKDAVN 90


>gi|197103657|ref|YP_002129034.1| integration host factor beta subunit [Phenylobacterium zucineum
           HLK1]
 gi|196477077|gb|ACG76605.1| integration host factor beta subunit [Phenylobacterium zucineum
           HLK1]
          Length = 120

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+L+  +++E   L+++D  R V  +   + ++   G  +++  F    V+ + +R 
Sbjct: 25  MIKSELIAKLAEENPHLTQRDIERVVGVILERMIEALEEGGRVELRGFGALSVRSRDARA 84

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN +T + V +  + V  FK+   L++R+ 
Sbjct: 85  GRNPRTGEPVDVRAKHVPFFKSGKELRERLN 115


>gi|237733822|ref|ZP_04564303.1| DNA-binding protein HU [Mollicutes bacterium D7]
 gi|229383160|gb|EEO33251.1| DNA-binding protein HU [Coprobacillus sp. D7]
          Length = 90

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV+++SKE  L++KD+   V T+FN I  S V G+ + IS F TF V  + +R G
Sbjct: 1  MNKKELVETVSKERNLTKKDAEILVDTVFNTITRSVVEGDKVLISGFGTFKVNDRKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           + +T +E+ I   + V FK S+ LK  + 
Sbjct: 61 ISPKTQEEMVIPASKTVTFKPSNRLKDAMN 90


>gi|323136968|ref|ZP_08072048.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC
           49242]
 gi|322397729|gb|EFY00251.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC
           49242]
          Length = 179

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 1/96 (1%)

Query: 2   SKTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
             T+TR+ L +++      LSR ++ + +   F EI D+ +RGE++K+ SF TF+V+ K 
Sbjct: 78  GSTLTRAALREAVYGCCPSLSRAEARKILDATFEEISDALLRGESVKLRSFGTFNVRSKR 137

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
            RVGRN +T  E  I PRRV+ FKAS +L   +  D
Sbjct: 138 ERVGRNPKTGVEATITPRRVLTFKASPVLVAHVNGD 173


>gi|295099668|emb|CBK88757.1| bacterial nucleoid protein Hbs [Eubacterium cylindroides T2-87]
          Length = 94

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 50/94 (53%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS T+ + DL   +  E+ LS+K +   + T+F EI ++      + I  F  F + ++ 
Sbjct: 1  MSTTVNKKDLAAKLVAEYDLSKKVAEGCINTVFEEIMNTLKEDGVVDIYGFGKFSLSERA 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +R+G N  T ++++I   + V FKAS  LK  + 
Sbjct: 61 ARMGLNPATGEKIEIPASKAVKFKASKSLKDAVK 94


>gi|154248715|ref|YP_001409540.1| histone family protein DNA-binding protein [Fervidobacterium
          nodosum Rt17-B1]
 gi|154152651|gb|ABS59883.1| histone family protein DNA-binding protein [Fervidobacterium
          nodosum Rt17-B1]
          Length = 91

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  LV +++++  L +KD    V  +F  I ++  +GE +++  F TF VK+   R G
Sbjct: 1  MNKKLLVNAVAEKTQLKKKDVKAVVDAVFETIAEALEKGEKVQLVDFGTFEVKKMAGRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T  ++KI  R+V  F+   +LK ++  
Sbjct: 61 VNPRTKSKIKIPSRKVPKFRPGKVLKSKVNK 91


>gi|307298658|ref|ZP_07578461.1| histone family protein DNA-binding protein [Thermotogales
          bacterium mesG1.Ag.4.2]
 gi|306915823|gb|EFN46207.1| histone family protein DNA-binding protein [Thermotogales
          bacterium mesG1.Ag.4.2]
          Length = 90

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  ++++ G ++K     +    + + +   + E +K+  F TF V ++ +R G
Sbjct: 1  MNKKELIAVLAEKTGATKKLVGDVIDGFIDVVGEELSKNEEVKLVGFGTFEVTKRKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N +T + ++I   +V  F+    LK+++ 
Sbjct: 61 VNPRTKEAIEIPGGKVPKFRPGKELKEKVQ 90


>gi|163748941|ref|ZP_02156192.1| integration host factor, beta subunit [Shewanella benthica KT99]
 gi|161331317|gb|EDQ02205.1| integration host factor, beta subunit [Shewanella benthica KT99]
          Length = 95

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  LS K+    +  +  ++  +   G  I+I  F +F +  +  R 
Sbjct: 1  MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMAQTLEGGNRIEIRGFGSFSLHFRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V++D + V  FK    L++R+
Sbjct: 61 GRNPKTGTSVELDGKYVPHFKPGKELRERV 90


>gi|297587538|ref|ZP_06946182.1| DNA-binding protein HU [Finegoldia magna ATCC 53516]
 gi|297574227|gb|EFH92947.1| DNA-binding protein HU [Finegoldia magna ATCC 53516]
          Length = 96

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ SI+K+  LS+ +S R +      + ++  +GE +++  F TF  +++ +R G
Sbjct: 1  MNKSELLTSIAKKSELSKVESERALNAFIKTVEETLAKGEKVQLVGFGTFESRERKAREG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95
          RN +  +E ++I      VFKA   LK+ +  
Sbjct: 61 RNPRNPEEKIQIPASNAPVFKAGKSLKEAVNK 92


>gi|307297819|ref|ZP_07577625.1| histone family protein DNA-binding protein [Thermotogales
          bacterium mesG1.Ag.4.2]
 gi|306917079|gb|EFN47461.1| histone family protein DNA-binding protein [Thermotogales
          bacterium mesG1.Ag.4.2]
          Length = 90

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  I+++ G+++KD+ + + T+ + I  +  +G+ +++  F TF V  + +R G
Sbjct: 1  MNKKELIAEIAEKTGVTKKDAGKTLDTVIDIIEKTLSKGDVVRLVGFGTFMVASRKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N +T + + I   +V  F     LK+++ 
Sbjct: 61 VNPRTKKPITIPGGKVPKFVPGKELKEKVK 90


>gi|294789887|ref|ZP_06755113.1| DNA-binding protein HU-beta [Simonsiella muelleri ATCC 29453]
 gi|294482177|gb|EFG29878.1| DNA-binding protein HU-beta [Simonsiella muelleri ATCC 29453]
          Length = 90

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K+I+ E GL++  +   +  L   + D    G  + I  F  F+V ++  R+G
Sbjct: 1  MNKAELIKTIATESGLTQTQANDALNALCKVVIDELSIGGEVNIVGFGRFYVAERAERMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T++ V I    V  FKA   LK  + 
Sbjct: 61 RNPKTSKPVMIPATCVAKFKAGKTLKDAVA 90


>gi|218131482|ref|ZP_03460286.1| hypothetical protein BACEGG_03100 [Bacteroides eggerthii DSM
          20697]
 gi|217986414|gb|EEC52751.1| hypothetical protein BACEGG_03100 [Bacteroides eggerthii DSM
          20697]
          Length = 88

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 47/85 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++ E GLS+ DS R +      +  +   G+ + +  F TF V ++  RVG
Sbjct: 1  MNKSELISAMAAEAGLSKADSKRALDAFIASVTKALKAGDKVALVGFGTFSVTERAGRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N  T + ++I  ++V  F+A S L
Sbjct: 61 INPATKKPIQIPAKKVAKFRAGSEL 85


>gi|329120384|ref|ZP_08249051.1| integration host factor beta subunit [Neisseria bacilliformis
          ATCC BAA-1200]
 gi|327462339|gb|EGF08665.1| integration host factor beta subunit [Neisseria bacilliformis
          ATCC BAA-1200]
          Length = 102

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 5  ITRSDLVKSISK----EFGLSR---KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          +T+S+L+  ++     +  LS    KD    V  L + +  S  RG+ I+I  F +F + 
Sbjct: 1  MTKSELMARLADVFADKHPLSPLMSKDVEYSVKILVDTMTRSLARGQRIEIRGFGSFDLN 60

Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           + +R GRN +T  +V +  + V  FK    L++R+   
Sbjct: 61 HRPARQGRNPKTGDKVDVPEKHVPHFKPGKELRERVDQS 99


>gi|315499913|ref|YP_004088716.1| histone family protein DNA-binding protein [Asticcacaulis
          excentricus CB 48]
 gi|315417925|gb|ADU14565.1| histone family protein DNA-binding protein [Asticcacaulis
          excentricus CB 48]
          Length = 100

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 60/92 (65%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + T+TR++L +++  E GL R++    V    + + DS  +GE +K+S F  F V++K +
Sbjct: 3  ATTLTRAELFEAVHNELGLPRQECAALVERTLDLVIDSLEKGETVKLSGFGVFQVREKNA 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RVGRN +T +   IDPR+V+ F+AS I+K R+
Sbjct: 63 RVGRNPKTGKPAAIDPRKVISFRASQIMKARV 94


>gi|37520401|ref|NP_923778.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421]
 gi|35211394|dbj|BAC88773.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421]
          Length = 94

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 53/94 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LVK++++   ++ K++   ++ +F+EI D+   GE + +  F TF  +++  R G
Sbjct: 1  MNKGELVKAVAERTKITLKEADAVISAVFDEIQDTVAGGEKVTLVGFGTFEARKRAEREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +TN+++ I       F A    K+ ++ + +
Sbjct: 61 RNPKTNEKMIIPATVAPAFSAGKTFKEAVLTNNK 94


>gi|323697932|ref|ZP_08109844.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          ND132]
 gi|323457864|gb|EGB13729.1| histone family protein DNA-binding protein [Desulfovibrio
          desulfuricans ND132]
          Length = 90

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  I+++  L++ ++ R +      +  + V    + ++ F TF V+ + SRVG
Sbjct: 1  MTKAELVVKIAEKANLTKANAERALNAFLETVESTLVSEGKLTLTGFGTFMVELRKSRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  E+KI   +VV F+   ILK  + 
Sbjct: 61 RNPRTGLELKIPETKVVKFRPGKILKDAVK 90


>gi|285017391|ref|YP_003375102.1| DNA-binding protein hu (histone-like protein hu) [Xanthomonas
          albilineans GPE PC73]
 gi|283472609|emb|CBA15114.1| probable dna-binding protein hu (histone-like protein hu)
          [Xanthomonas albilineans]
          Length = 90

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L  +I+    +S+ ++ R V    +E+  +  +G+++ +  F TF V+ +  R G
Sbjct: 1  MNKAELNDAIAAAADISKAEAGRAVDAFVSEVTKALKKGDSVTLVGFGTFQVRDRAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   +   FKA   LK  + 
Sbjct: 61 RNPKTGDSIKIAASKNPTFKAGKALKDAVN 90


>gi|159474730|ref|XP_001695478.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158275961|gb|EDP01736.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 87

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          ++ LV++I+ E GL++  + +   +L   I D+ + G+ + I  F TF V+++ +R GRN
Sbjct: 1  KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 60

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
            T   ++I   +  VFKAS  LK  +
Sbjct: 61 PSTGAVLQIAASKAPVFKASVGLKDAV 87


>gi|148263534|ref|YP_001230240.1| histone family protein DNA-binding protein [Geobacter
          uraniireducens Rf4]
 gi|146397034|gb|ABQ25667.1| histone family protein DNA-binding protein [Geobacter
          uraniireducens Rf4]
          Length = 93

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+LV  + +  G LSRK+S   ++ +F+ +C++   GE ++I  F +F ++ + +R 
Sbjct: 1  MTKSELVDKLVEVNGILSRKESEAIISIVFDSMCEALKSGEKVEIRGFGSFTIRDREARE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN ++ + VKI  ++   FK    L++R+ +
Sbjct: 61 ARNPKSGEIVKIASKKTPFFKTGKELRERVNN 92


>gi|50085437|ref|YP_046947.1| integration host factor (IHF),beta subunit, site specific
           recombination [Acinetobacter sp. ADP1]
 gi|49531413|emb|CAG69125.1| integration host factor (IHF),beta subunit, site specific
           recombination [Acinetobacter sp. ADP1]
          Length = 101

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 1/98 (1%)

Query: 2   SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           ++ + +SDL++ I+ K   L+       V  + +++ D+      I+I  F +F +  + 
Sbjct: 3   TEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIDALSNDNRIEIRGFGSFALHHRD 62

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            RVGRN +T + V++  + V  FK    L+  + + + 
Sbjct: 63  PRVGRNPKTGKSVEVAAKAVPHFKPGKALRDAVNEAIN 100


>gi|85709918|ref|ZP_01040983.1| integration host factor beta-subunit [Erythrobacter sp. NAP1]
 gi|85688628|gb|EAQ28632.1| integration host factor beta-subunit [Erythrobacter sp. NAP1]
          Length = 93

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L+  + K    L  ++  + V   F+EI      G  +++  F  F  + + +R 
Sbjct: 1  MIRSELLTELHKDNPELRSEEVEQVVDIFFDEISQRLAEGGRVELRGFGAFSTRDREART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V++  +RV  FKA   ++ R+ +D
Sbjct: 61 GRNPRTGEAVEVPAKRVPYFKAGKEIRNRLNED 93


>gi|294787730|ref|ZP_06752974.1| integration host factor, beta subunit [Simonsiella muelleri ATCC
          29453]
 gi|294484023|gb|EFG31706.1| integration host factor, beta subunit [Simonsiella muelleri ATCC
          29453]
          Length = 101

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 7/96 (7%)

Query: 5  ITRSDLVKSISK-------EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          +T+S+L+  +++       +  L  KD    V  L + +  S  +G+ I+I  F +F + 
Sbjct: 1  MTKSELMTRLAEVFVEKNSDTELQTKDIEYSVKVLVDTMTRSLAKGQRIEIRGFGSFDLN 60

Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           + +RVGRN +T + V++  +RV  FK    L++R+
Sbjct: 61 DRPARVGRNPKTGERVEVPAKRVPHFKPGKELRERV 96


>gi|153805807|ref|ZP_01958475.1| hypothetical protein BACCAC_00044 [Bacteroides caccae ATCC 43185]
 gi|149130484|gb|EDM21690.1| hypothetical protein BACCAC_00044 [Bacteroides caccae ATCC 43185]
          Length = 90

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++ E  +S+ D+ + +      + ++   G+ + +  F TF V ++  R G
Sbjct: 1  MNKSELISAMAAESQMSKADAKKALDAFITSVTNAMKAGDKVSLVGFGTFSVSERAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T   + I  ++V  FKA + L   + 
Sbjct: 61 INPSTKATITIPAKKVAKFKAGAELSAAVE 90


>gi|114566192|ref|YP_753346.1| non-specific DNA-binding protein HBsu [Syntrophomonas wolfei
          subsp. wolfei str. Goettingen]
 gi|114337127|gb|ABI67975.1| bacterial nucleoid protein Hbs [Syntrophomonas wolfei subsp.
          wolfei str. Goettingen]
          Length = 110

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 46/85 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LVKS++++  +++KD+ + +  L   I  +   G+ ++I  F +F V+ +  R  
Sbjct: 1  MNKSELVKSLAEKAEITQKDAAKVLDALVESIQQALAGGDKVQIIGFGSFEVRDRKERKV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           +  T +E+ +   +V  FK    L
Sbjct: 61 ISPATGKEITVPATKVPAFKPGKSL 85


>gi|254361238|ref|ZP_04977381.1| integration host factor beta subunit [Mannheimia haemolytica
          PHL213]
 gi|261492539|ref|ZP_05989092.1| integration host factor, beta subunit [Mannheimia haemolytica
          serotype A2 str. BOVINE]
 gi|261495208|ref|ZP_05991670.1| integration host factor, beta subunit [Mannheimia haemolytica
          serotype A2 str. OVINE]
 gi|3334237|sp|P95519|IHFB_PASHA RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|1842239|gb|AAC44846.1| integration host factor Beta subunit [Mannheimia haemolytica]
 gi|153092734|gb|EDN73777.1| integration host factor beta subunit [Mannheimia haemolytica
          PHL213]
 gi|261309133|gb|EEY10374.1| integration host factor, beta subunit [Mannheimia haemolytica
          serotype A2 str. OVINE]
 gi|261311698|gb|EEY12848.1| integration host factor, beta subunit [Mannheimia haemolytica
          serotype A2 str. BOVINE]
          Length = 93

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++S++ +   L  K     V  L  ++  +   GE I++  F +F +  +  R+
Sbjct: 1  MTKSELIESLASKNPSLPIKMVEHCVKELLEQLTATLEEGERIEVRGFGSFSLHYRQPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V +  + V  FKA   LK+R+
Sbjct: 61 GRNPKTGESVLLGAKYVPHFKAGKDLKERV 90


>gi|27904545|ref|NP_777671.1| DNA-binding protein HU [Buchnera aphidicola str. Bp (Baizongia
          pistaciae)]
 gi|31340030|sp|Q89B22|DBH_BUCBP RecName: Full=DNA-binding protein HU
 gi|27903942|gb|AAO26776.1| DNA-binding protein HU [Buchnera aphidicola str. Bp (Baizongia
          pistaciae)]
          Length = 92

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 43/90 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  ISK+  LS+      +      I  S   G ++++  F TF V  + +R+G
Sbjct: 1  MNKSELINIISKKSNLSKIQIKNILEITLTAIIQSLKDGNSVQLVGFGTFKVNNRAARIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT Q + I   +  VF +    K  I 
Sbjct: 61 RNPQTGQTIHISATKTPVFISGKTFKTAIK 90


>gi|319762738|ref|YP_004126675.1| histone family protein DNA-binding protein [Alicycliphilus
          denitrificans BC]
 gi|317117299|gb|ADU99787.1| histone family protein DNA-binding protein [Alicycliphilus
          denitrificans BC]
          Length = 90

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL++ ++ +  +S+  + R + +    +  +  +G  + +  F ++ V ++ +RVG
Sbjct: 1  MNKSDLIERMASDADISKAAAERALESFTTAVQTTLKKGGTVALVGFGSWSVTKRAARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + +KI  R+   F      K  + 
Sbjct: 61 RNPKTGEALKIKARKAPKFTPGKAFKDALN 90


>gi|157375434|ref|YP_001474034.1| integration host factor, beta subunit [Shewanella sediminis
          HAW-EB3]
 gi|189045046|sp|A8FVN3|IHFB_SHESH RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|157317808|gb|ABV36906.1| integration host factor, beta subunit [Shewanella sediminis
          HAW-EB3]
          Length = 95

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +S K+    +  +  ++  +   G+ I+I  F +F +  +  R 
Sbjct: 1  MTKSELIEKLATRQSQMSAKEVESAIKEMLEQMAQTLEGGDRIEIRGFGSFSLHFRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +D + V  FK    L++R+
Sbjct: 61 GRNPKTGTSVDLDGKYVPHFKPGKELRERV 90


>gi|302878691|ref|YP_003847255.1| integration host factor, beta subunit [Gallionella
          capsiferriformans ES-2]
 gi|302581480|gb|ADL55491.1| integration host factor, beta subunit [Gallionella
          capsiferriformans ES-2]
          Length = 97

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRS+L+  ++ +F  L+  D    V T+ +E+  +  RG  I+I  F +F +  +  R 
Sbjct: 1  MTRSELIAQLAAKFPQLTNSDIDMAVRTILDEMSRTLARGNRIEIRGFGSFGLNHRPPRK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++   V +  + V  FK    L++R+
Sbjct: 61 GRNPKSGVNVMVPAKYVPHFKTGKELRERV 90


>gi|170740732|ref|YP_001769387.1| integration host factor subunit beta [Methylobacterium sp. 4-46]
 gi|168195006|gb|ACA16953.1| integration host factor, beta subunit [Methylobacterium sp. 4-46]
          Length = 106

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 1/102 (0%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+LV  I+++   L ++D    V  + + I D+  RG+ +++  F  F VK++ +R 
Sbjct: 1   MIKSELVLKIAEQNPHLYQRDVESIVNAILDTIADALARGDRVELRGFGAFSVKRREARR 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           GRN +T   V +  + + VFK    ++ R+     G +  + 
Sbjct: 61  GRNPRTGAAVAVAEKAIPVFKTGKEMRLRLNAAGIGAETREP 102


>gi|15677168|ref|NP_274321.1| integration host factor beta-subunit [Neisseria meningitidis MC58]
 gi|121635014|ref|YP_975259.1| integration host factor beta-subunit [Neisseria meningitidis FAM18]
 gi|218768324|ref|YP_002342836.1| integration host factor subunit beta [Neisseria meningitidis Z2491]
 gi|254805103|ref|YP_003083324.1| integration host factor beta-subunit [Neisseria meningitidis
           alpha14]
 gi|261400687|ref|ZP_05986812.1| integration host factor, beta subunit [Neisseria lactamica ATCC
           23970]
 gi|268594993|ref|ZP_06129160.1| integration host factor subunit beta [Neisseria gonorrhoeae 35/02]
 gi|268596627|ref|ZP_06130794.1| integration host factor subunit beta [Neisseria gonorrhoeae FA19]
 gi|268603907|ref|ZP_06138074.1| integration host factor beta-subunit [Neisseria gonorrhoeae PID1]
 gi|268682370|ref|ZP_06149232.1| integration host factor beta-subunit [Neisseria gonorrhoeae PID332]
 gi|268684528|ref|ZP_06151390.1| integration host factor beta-subunit [Neisseria gonorrhoeae
           SK-92-679]
 gi|293398895|ref|ZP_06643060.1| integration host factor, beta subunit [Neisseria gonorrhoeae F62]
 gi|304387392|ref|ZP_07369584.1| integration host factor beta subunit [Neisseria meningitidis ATCC
           13091]
 gi|313668441|ref|YP_004048725.1| integration host factor beta-subunit [Neisseria lactamica ST-640]
 gi|60392449|sp|P0A0U1|IHFB_NEIMA RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|60392450|sp|P0A0U2|IHFB_NEIMB RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|60392451|sp|P0A0U3|IHFB_NEIGO RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|166918555|sp|A1KUD0|IHFB_NEIMF RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gi|7226542|gb|AAF41677.1| integration host factor, beta subunit [Neisseria meningitidis MC58]
 gi|9965584|gb|AAG10095.1| IfhA [Neisseria gonorrhoeae]
 gi|120866720|emb|CAM10473.1| integration host factor beta-subunit [Neisseria meningitidis FAM18]
 gi|121052332|emb|CAM08663.1| integration host factor beta-subunit [Neisseria meningitidis Z2491]
 gi|254668645|emb|CBA06291.1| integration host factor beta-subunit [Neisseria meningitidis
           alpha14]
 gi|254670493|emb|CBA06219.1| integration host factor beta-subunit [Neisseria meningitidis
           alpha153]
 gi|254673141|emb|CBA07940.1| integration host factor beta-subunit [Neisseria meningitidis
           alpha275]
 gi|261392417|emb|CAX49959.1| integration host factor beta-subunit (IHF-beta) [Neisseria
           meningitidis 8013]
 gi|268548382|gb|EEZ43800.1| integration host factor subunit beta [Neisseria gonorrhoeae 35/02]
 gi|268550415|gb|EEZ45434.1| integration host factor subunit beta [Neisseria gonorrhoeae FA19]
 gi|268588038|gb|EEZ52714.1| integration host factor beta-subunit [Neisseria gonorrhoeae PID1]
 gi|268622654|gb|EEZ55054.1| integration host factor beta-subunit [Neisseria gonorrhoeae PID332]
 gi|268624812|gb|EEZ57212.1| integration host factor beta-subunit [Neisseria gonorrhoeae
           SK-92-679]
 gi|269209603|gb|EEZ76058.1| integration host factor, beta subunit [Neisseria lactamica ATCC
           23970]
 gi|291610309|gb|EFF39419.1| integration host factor, beta subunit [Neisseria gonorrhoeae F62]
 gi|304338643|gb|EFM04761.1| integration host factor beta subunit [Neisseria meningitidis ATCC
           13091]
 gi|308389422|gb|ADO31742.1| integration host factor beta-subunit [Neisseria meningitidis
           alpha710]
 gi|309379233|emb|CBX22190.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313005903|emb|CBN87359.1| integration host factor beta-subunit [Neisseria lactamica 020-06]
 gi|319410569|emb|CBY90938.1| integration host factor beta-subunit (IHF-beta) [Neisseria
           meningitidis WUE 2594]
 gi|325128401|gb|EGC51284.1| integration host factor, beta subunit [Neisseria meningitidis
           N1568]
 gi|325130334|gb|EGC53100.1| integration host factor, beta subunit [Neisseria meningitidis
           OX99.30304]
 gi|325132497|gb|EGC55190.1| integration host factor, beta subunit [Neisseria meningitidis
           M6190]
 gi|325134456|gb|EGC57101.1| integration host factor, beta subunit [Neisseria meningitidis
           M13399]
 gi|325136194|gb|EGC58802.1| integration host factor, beta subunit [Neisseria meningitidis
           M0579]
 gi|325138271|gb|EGC60840.1| integration host factor, beta subunit [Neisseria meningitidis
           ES14902]
 gi|325140473|gb|EGC62994.1| integration host factor, beta subunit [Neisseria meningitidis
           CU385]
 gi|325142525|gb|EGC64926.1| integration host factor, beta subunit [Neisseria meningitidis
           961-5945]
 gi|325144557|gb|EGC66856.1| integration host factor, beta subunit [Neisseria meningitidis
           M01-240013]
 gi|325198454|gb|ADY93910.1| integration host factor, beta subunit [Neisseria meningitidis
           G2136]
 gi|325200072|gb|ADY95527.1| integration host factor, beta subunit [Neisseria meningitidis
           H44/76]
 gi|325201987|gb|ADY97441.1| integration host factor, beta subunit [Neisseria meningitidis
           M01-240149]
 gi|325204303|gb|ADY99756.1| integration host factor, beta subunit [Neisseria meningitidis
           M01-240355]
 gi|325205924|gb|ADZ01377.1| integration host factor, beta subunit [Neisseria meningitidis
           M04-240196]
 gi|325208262|gb|ADZ03714.1| integration host factor, beta subunit [Neisseria meningitidis
           NZ-05/33]
          Length = 104

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 5   ITRSDLVKSISK------EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
           +T+S+L+  +++         L  KD    V  L + +  S  RG+ I+I  F +F +  
Sbjct: 1   MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           + +R+GRN +T + V++  + V  FK    L++R+   ++
Sbjct: 61  RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERVDLALK 100


>gi|269837198|ref|YP_003319426.1| histone family protein DNA-binding protein [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786461|gb|ACZ38604.1| histone family protein DNA-binding protein [Sphaerobacter
           thermophilus DSM 20745]
          Length = 97

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 51/96 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +SDLVK+++++        +  V   F+ I ++   G+ + I+ F TF + ++G+R G
Sbjct: 1   MRKSDLVKAVARKVQQPESHVSTVVNATFDAIREALASGDEVAITGFGTFRISERGAREG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RN QT + + I  RR   FK  + LK+ +  +    
Sbjct: 61  RNPQTGERITIPSRRSPSFKPGTQLKRAVSGEAAAA 96


>gi|119946633|ref|YP_944313.1| integration host factor, beta subunit [Psychromonas ingrahamii
          37]
 gi|166975884|sp|A1SYZ9|IHFB_PSYIN RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|119865237|gb|ABM04714.1| integration host factor, beta subunit [Psychromonas ingrahamii
          37]
          Length = 95

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+SDL++ + SK F LS K+    V      + +S  +GE I++  F +F +  +  RV
Sbjct: 1  MTKSDLIERLTSKHFQLSVKEVEDSVKETLTLMANSLAQGERIEVRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T   V++D + V  FK    L++R+   
Sbjct: 61 GRNPKTGDRVELDGKYVPHFKPGKALRERVNAA 93


>gi|158312967|ref|YP_001505475.1| histone family protein DNA-binding protein [Frankia sp. EAN1pec]
 gi|288919145|ref|ZP_06413484.1| histone family protein DNA-binding protein [Frankia sp. EUN1f]
 gi|158108372|gb|ABW10569.1| histone family protein DNA-binding protein [Frankia sp. EAN1pec]
 gi|288349489|gb|EFC83727.1| histone family protein DNA-binding protein [Frankia sp. EUN1f]
          Length = 94

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S LV  I+++    R ++T+ V  +F+ I ++   GE + I+ F  F   ++ +R G
Sbjct: 1  MNKSQLVDRIAQQIEGGRSNATKAVDAVFDAIQEAVAGGEKVTITGFGVFERVERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T + V +    V  F+  S  K  +
Sbjct: 61 RNPATGEPVHVAASVVPKFRPGSEFKASV 89


>gi|302039381|ref|YP_003799703.1| integration host factor subunit alpha [Candidatus Nitrospira
          defluvii]
 gi|300607445|emb|CBK43778.1| Integration host factor, alpha subunit [Candidatus Nitrospira
          defluvii]
          Length = 91

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 55/90 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D+   I K+ G+S+ D+   V  + N +     +G+A+KI+ F  F V+ KG+R G
Sbjct: 1  MRKADIANEIFKQVGVSKNDAADIVELVLNLLKGVLQKGDAVKIAGFGNFVVRSKGARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E+ I PRRVV F+ S + KK + 
Sbjct: 61 RNPRTGEEIGITPRRVVTFRPSQVFKKYVN 90


>gi|331004374|ref|ZP_08327847.1| hypothetical protein HMPREF0491_02709 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330411104|gb|EGG90523.1| hypothetical protein HMPREF0491_02709 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 93

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 5  ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + R++LV +++K+ G  +++K+    + +  + + +       I++  F TF    + +R
Sbjct: 1  MNRTELVDAMAKKMGNSVTKKEVESALKSFVDVVTEELSNKGKIQLVGFGTFETSVRPAR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           GRN +T + +KI    V  FK    LK  + +
Sbjct: 61 EGRNPRTGETMKIAESVVPKFKPGKALKDAVNN 93


>gi|255067152|ref|ZP_05319007.1| integration host factor, beta subunit [Neisseria sicca ATCC
          29256]
 gi|261365784|ref|ZP_05978667.1| integration host factor, beta subunit [Neisseria mucosa ATCC
          25996]
 gi|255048520|gb|EET43984.1| integration host factor, beta subunit [Neisseria sicca ATCC
          29256]
 gi|288565692|gb|EFC87252.1| integration host factor, beta subunit [Neisseria mucosa ATCC
          25996]
          Length = 104

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 6/95 (6%)

Query: 5  ITRSDL----VKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          +T+S+L     +  +++ G  L  KD    V  L + +  S  RG+ I+I  F +F +  
Sbjct: 1  MTKSELMVRLAEVFAEKNGNQLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          + +R+GRN +T + V++  + V  FK    L++R+
Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERV 95


>gi|171463928|ref|YP_001798041.1| histone family protein DNA-binding protein [Polynucleobacter
          necessarius subsp. necessarius STIR1]
 gi|171193466|gb|ACB44427.1| histone family protein DNA-binding protein [Polynucleobacter
          necessarius subsp. necessarius STIR1]
          Length = 114

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 3  KTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + ITRS+LV+S++++F  L  +D    V TL + +  +   G+ I++    +F +  + +
Sbjct: 7  QAITRSELVESLAEQFPQLLPRDVELAVKTLLDTMTHALAEGKRIELRGVGSFVLHHRPA 66

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R  RN ++ ++V I  +RV  FK    L++R+
Sbjct: 67 RTDRNPKSGEKVLIPEKRVPRFKPGKELRERV 98


>gi|310767180|gb|ADP12130.1| integration host factor subunit beta [Erwinia sp. Ejp617]
          Length = 95

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ ++  +  K     V  +   +  +   GE I++  F +F +  +  R 
Sbjct: 1  MTKSELIERLACQQPHIQAKVLEDAVKEMLEHMATTLSEGERIEVRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T  +V+++ + V  FK    L+ R  +
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANN 92


>gi|197118442|ref|YP_002138869.1| integration host factor subunit beta [Geobacter bemidjiensis Bem]
 gi|197087802|gb|ACH39073.1| integration host factor, beta subunit [Geobacter bemidjiensis
          Bem]
          Length = 91

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++S++ +  LS K +   V  +F  + D+ + G+ I+I    +F VK+  +  G
Sbjct: 1  MNKSELIESLAAKKTLSFKKAEEVVNAVFASMTDALLSGDRIEIRGVGSFVVKEYDAYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + +  +++  FK    LK+++
Sbjct: 61 RNPKTGESISVKAKKLPFFKVGKELKEKV 89


>gi|306820791|ref|ZP_07454416.1| DNA-binding protein HU [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551181|gb|EFM39147.1| DNA-binding protein HU [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 102

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 1/101 (0%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++DLV  I+++ GL++KDS   +      + ++ V+ E +++  F TF  +++ +R G
Sbjct: 1   MNKADLVSKIAEKSGLTKKDSETALNAFMASVEEALVKQEKVQLVGFGTFETRERAAREG 60

Query: 65  RNLQ-TNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           RN +    ++KI   +  VFKA   LK+++      +   K
Sbjct: 61  RNPRDPKVKIKIPASKAPVFKAGKGLKEKVNASAGKKVAKK 101


>gi|223986260|ref|ZP_03636274.1| hypothetical protein HOLDEFILI_03584 [Holdemania filiformis DSM
          12042]
 gi|223961755|gb|EEF66253.1| hypothetical protein HOLDEFILI_03584 [Holdemania filiformis DSM
          12042]
          Length = 94

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 49/94 (52%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS+ + +  LV  ++ + G+++K +   V  +F+EI  +   G  + IS F  F VK + 
Sbjct: 1  MSELLNKKALVDIVANQMGMTKKAAGETVDLIFDEITSTLKDGGKVDISGFGKFEVKTRA 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           R G N  T +++ +   +V  FKA+  LK  + 
Sbjct: 61 ERTGINPATKEKITVPATKVPGFKAAKALKDAVK 94


>gi|213021940|ref|ZP_03336387.1| transcriptional regulator HU subunit alpha [Salmonella enterica
          subsp. enterica serovar Typhi str. 404ty]
          Length = 85

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 42/85 (49%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          ++  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R GRN QT
Sbjct: 1  MIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQT 60

Query: 70 NQEVKIDPRRVVVFKASSILKKRIM 94
           +E+KI    V  F +   LK  + 
Sbjct: 61 GKEIKIAAANVPAFVSGKALKDAVK 85


>gi|302879154|ref|YP_003847718.1| integration host factor, beta subunit [Gallionella
          capsiferriformans ES-2]
 gi|302581943|gb|ADL55954.1| integration host factor, beta subunit [Gallionella
          capsiferriformans ES-2]
          Length = 97

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRS+L+  ++ +F  L+  D    V T+ +E+  +  RG  I+I  F +F +  +  R 
Sbjct: 1  MTRSELIAQLAAKFPQLTNSDIDMAVRTILDEMSRTLARGNRIEIRGFGSFGLNHRPPRK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++   V +  + V  FK    L++R+
Sbjct: 61 GRNPKSGVNVMVPAKYVPHFKTGKELRERV 90


>gi|325983542|ref|YP_004295944.1| integration host factor, beta subunit [Nitrosomonas sp. AL212]
 gi|325533061|gb|ADZ27782.1| integration host factor, beta subunit [Nitrosomonas sp. AL212]
          Length = 96

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  ++  F  L  KD+   V T+ + +  S   G+ I+I  F +F +  +  R+
Sbjct: 1  MTKSELITRLAARFPQLVAKDAELSVKTIIDAMAQSLASGQRIEIRGFGSFDLNYRPPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++VK+  + V  FKA   +++R+
Sbjct: 61 GRNPKSGEKVKVPEKYVPHFKAGKEMRERV 90


>gi|313890818|ref|ZP_07824443.1| DNA-binding protein HU-beta [Streptococcus pseudoporcinus SPIN
          20026]
 gi|313120919|gb|EFR44033.1| DNA-binding protein HU-beta [Streptococcus pseudoporcinus SPIN
          20026]
          Length = 91

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 47/89 (52%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  I      GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATDLTKKDSAAAVDAVFAAIEGFLAEGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E++I   +V  FKA   LK  + 
Sbjct: 63 NPQTGAEIEIAASKVPAFKAGKALKDAVK 91


>gi|256820793|ref|YP_003142072.1| histone family protein DNA-binding protein [Capnocytophaga
          ochracea DSM 7271]
 gi|315223936|ref|ZP_07865781.1| DNA-binding protein HU-beta [Capnocytophaga ochracea F0287]
 gi|256582376|gb|ACU93511.1| histone family protein DNA-binding protein [Capnocytophaga
          ochracea DSM 7271]
 gi|314946108|gb|EFS98112.1| DNA-binding protein HU-beta [Capnocytophaga ochracea F0287]
          Length = 92

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+   GL++ DS + V   F+ +  +  +G+ + +  F ++ V +K +R  
Sbjct: 1  MNKSELIDAIAAGSGLTKTDSKKAVEAFFSSVEKALKKGDKVAVVGFGSWSVAKKEAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T   +K+  ++VV FKA + L + +  
Sbjct: 61 RNPRTGAVIKVPAKKVVKFKAGAELSEAVNK 91


>gi|311696395|gb|ADP99268.1| histone-like bacterial DNA-binding protein [marine bacterium
          HP15]
          Length = 90

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L  +I+   GL+R+ ++  +T   +++  +A RGE + +  F TF+++ + +R G
Sbjct: 1  MRKPELAAAIADRTGLTREKASEVITAFTDQVSAAASRGEDVTLIGFGTFNIRSREARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I   + V FKA   LK  I
Sbjct: 61 RNPQTGETIRIPASKTVGFKAGKALKDEI 89


>gi|295699910|ref|YP_003607803.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1002]
 gi|295439123|gb|ADG18292.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1002]
          Length = 92

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 46/92 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++   G S+  + + +  +   +  + V G+ +++  F +F    + +RVG
Sbjct: 1  MNKQELIDAVAAATGESKAATGQTIDAIVEAVTKAVVSGDTVQLVGFGSFSTGARAARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN  T +E++I   + V F A    K+ +   
Sbjct: 61 RNPSTGEEIQIAAAKTVKFTAGKAFKEAVNAS 92


>gi|82703188|ref|YP_412754.1| integration host factor, beta subunit [Nitrosospira multiformis
          ATCC 25196]
 gi|123740640|sp|Q2Y7A9|IHFB_NITMU RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|82411253|gb|ABB75362.1| integration host factor, beta subunit [Nitrosospira multiformis
          ATCC 25196]
          Length = 94

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  ++     L  KD+   V  + + +  S  +G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIARLAARHPQLGTKDAELAVKVILDAMAKSLSQGQRIEIRGFGSFDLNYRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V++  + V  FKA   +++R+
Sbjct: 61 GRNPKSGEKVRVPEKYVPHFKAGKEMRERV 90


>gi|29348239|ref|NP_811742.1| DNA-binding protein HU-beta [Bacteroides thetaiotaomicron
          VPI-5482]
 gi|253569395|ref|ZP_04846805.1| DNA-binding protein HU-beta [Bacteroides sp. 1_1_6]
 gi|298386068|ref|ZP_06995625.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
 gi|29340142|gb|AAO77936.1| DNA-binding protein HU-beta [Bacteroides thetaiotaomicron
          VPI-5482]
 gi|251841414|gb|EES69495.1| DNA-binding protein HU-beta [Bacteroides sp. 1_1_6]
 gi|298261296|gb|EFI04163.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
          Length = 90

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++ E  +S+ D+ + +    + + ++   G+ + +  F TF V ++ +R G
Sbjct: 1  MNKSELISAMAAEAQMSKADAKKALDAFISSVTNAMKAGDKVALVGFGTFSVSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T   + I  ++V  FKA + L   + 
Sbjct: 61 INPSTKAAITIPAKKVAKFKAGAELSAAVE 90


>gi|255592017|ref|XP_002535650.1| Integration host factor beta-subunit, putative [Ricinus communis]
 gi|223522397|gb|EEF26731.1| Integration host factor beta-subunit, putative [Ricinus communis]
          Length = 93

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L+  ++ +   L++KD  R V  +   + ++   G  +++  F    V+ + +R 
Sbjct: 1  MIKSELIARLANENPHLTQKDVERVVGVILERMINALEAGGRVELRGFGALSVRSRPARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V +  + V  FK+   L+ R+  +
Sbjct: 61 GRNPRTGETVDVRAKHVPFFKSGKELRARLNAE 93


>gi|167644077|ref|YP_001681740.1| integration host factor subunit beta [Caulobacter sp. K31]
 gi|226709785|sp|B0T273|IHFB_CAUSK RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|167346507|gb|ABZ69242.1| integration host factor, beta subunit [Caulobacter sp. K31]
          Length = 94

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L+  ++ +   L++KD  R V  +   +  +   G  +++  F    V+ + +R 
Sbjct: 1  MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPARA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V +  + V  FK+   L+ R+  D
Sbjct: 61 GRNPRTGETVDVRAKHVPFFKSGKELRGRLNAD 93


>gi|319404926|emb|CBI78526.1| integration host factor beta chain [Bartonella sp. AR 15-3]
          Length = 92

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S LV+ I++    L ++D+   V+ +F EI  +   G+ +++  F  F +K + +R 
Sbjct: 1  MVKSKLVQIIARHNPHLMQRDAENVVSAIFEEISAALANGQRVELRGFGAFSIKARSARN 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V ++ + V  FK    L+ R+  
Sbjct: 61 GRNPRTGEAVMVEEKWVPFFKTGKDLRDRLNK 92


>gi|209515147|ref|ZP_03264015.1| histone family protein DNA-binding protein [Burkholderia sp.
          H160]
 gi|209504401|gb|EEA04389.1| histone family protein DNA-binding protein [Burkholderia sp.
          H160]
          Length = 92

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 46/92 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++   G S+  + + +  +   +  + V G+ +++  F +F    + +RVG
Sbjct: 1  MNKQELIDAVAATTGESKAATGQTIDAIVEAVTKAVVSGDTVQLVGFGSFSTGARAARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN  T +E++I   + V F A    K+ +   
Sbjct: 61 RNPSTGEEIQIAAAKTVKFTAGKAFKEAVNAS 92


>gi|77919476|ref|YP_357291.1| nucleoid DNA-binding protein [Pelobacter carbinolicus DSM 2380]
 gi|77545559|gb|ABA89121.1| nucleoid DNA-binding protein [Pelobacter carbinolicus DSM 2380]
          Length = 94

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ +S   G LS+K+S   V TL + I D+ V G+ ++I  F +F V+ + +R 
Sbjct: 1  MTKSELIEELSYLNGILSKKESELVVNTLLDGIRDALVGGDRVEIRGFGSFTVRTREARE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           RN ++ + V I  ++   FK    L++R+   
Sbjct: 61 ARNPKSGEVVAIPAKKTAFFKTGKQLRERVDKG 93


>gi|330970215|gb|EGH70281.1| histone-like DNA-binding protein [Pseudomonas syringae pv. aceris
          str. M302273PT]
          Length = 91

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + D+  +I+++  L+++ S R +  +  EI  +  R +++ +    TF  + +G+R G
Sbjct: 1  MRKPDVAAAIAEKADLTKEQSNRVLNAILEEITGALNRKDSVTLVGLGTFLQRHRGARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT + VKI     V FK    LK  + 
Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKALKDSVN 90


>gi|254501752|ref|ZP_05113903.1| DNA-binding protein HU [Labrenzia alexandrii DFL-11]
 gi|222437823|gb|EEE44502.1| DNA-binding protein HU [Labrenzia alexandrii DFL-11]
          Length = 83

 Score =  116 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 59/82 (71%)

Query: 18 FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDP 77
           GLSR +S+  V  + +EI D  V GE++K+SSF +F V+ KG R+GRN +T +EV I P
Sbjct: 1  MGLSRTESSELVERVLSEISDCLVTGESVKLSSFGSFVVRSKGERIGRNPKTGEEVPISP 60

Query: 78 RRVVVFKASSILKKRIMDDMRG 99
          RRV+VFK S++LK+RI D + G
Sbjct: 61 RRVMVFKPSNVLKQRINDALTG 82


>gi|254294703|ref|YP_003060726.1| integration host factor subunit beta [Hirschia baltica ATCC
          49814]
 gi|254043234|gb|ACT60029.1| integration host factor, beta subunit [Hirschia baltica ATCC
          49814]
          Length = 99

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L+  +S+E   +  ++  R V  + +EI  +   G+ +++  F  F V+Q+ +R 
Sbjct: 1  MLRSELILRLSEERPEIRPREVERIVDVILDEIAAALEAGDRVELRGFGAFSVRQREART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V ++ + V  FKA   L+ R+ + 
Sbjct: 61 GRNPRTGESVPVEQKFVPFFKAGKELRARLNNG 93


>gi|46199286|ref|YP_004953.1| putative DNA binding protein [Thermus thermophilus HB27]
 gi|55981318|ref|YP_144615.1| DNA-binding protein HU [Thermus thermophilus HB8]
 gi|46196911|gb|AAS81326.1| putative DNA binding protein [Thermus thermophilus HB27]
 gi|55772731|dbj|BAD71172.1| DNA-binding protein HU (DNA-binding protein II) [Thermus
          thermophilus HB8]
          Length = 97

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 51/93 (54%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+T++DLV  +++  GL +KD    V  L  ++ ++   G  ++++ F TF V+++ +R
Sbjct: 5  KTVTKADLVDQVAQATGLKKKDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKAR 64

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           G    T +++KI   +   FK    LK ++  
Sbjct: 65 TGVKPGTKEKIKIPATQYPAFKPGKALKDKVKK 97


>gi|238897499|ref|YP_002923178.1| HU, DNA-binding transcriptional regulator, alpha subunit-1
          [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
          pisum)]
 gi|229465256|gb|ACQ67030.1| HU, DNA-binding transcriptional regulator, alpha subunit-1
          [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
          pisum)]
          Length = 113

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ +  + GL++  ST  VT +F+ I ++  + E ++I  F TF V+ +  R+ 
Sbjct: 1  MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIEALGKKEPVQIIRFGTFKVRHRKERIS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +++K   R V VF A   LK  +
Sbjct: 61 RNPKTGEKIKTPAREVAVFSAGKSLKDSV 89


>gi|126658610|ref|ZP_01729756.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110]
 gi|172036660|ref|YP_001803161.1| DNA binding protein HU [Cyanothece sp. ATCC 51142]
 gi|126620047|gb|EAZ90770.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110]
 gi|171698114|gb|ACB51095.1| DNA binding protein HU [Cyanothece sp. ATCC 51142]
          Length = 93

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++ +  +++K +   ++     I ++    + + +  F +F  + + +R G
Sbjct: 1  MNKGELIDAVANKAEVTKKQAETVISATIETIMEAVAGDDKVTLVGFGSFEARDRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +TN+++ I   +V  F A  + K+R+ 
Sbjct: 61 RNPKTNEKMSIPATKVPAFSAGKLFKERVA 90


>gi|319779504|ref|YP_004130417.1| DNA-binding protein HU-beta [Taylorella equigenitalis MCE9]
 gi|317109528|gb|ADU92274.1| DNA-binding protein HU-beta [Taylorella equigenitalis MCE9]
          Length = 93

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 47/92 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+++  LS+  + R +      I  S  +G+ + +  F TF V  + +R G
Sbjct: 1  MNKTELIEKIAEKTDLSKAAAGRALDATIEAIKASMKKGQPVTLVGFGTFRVNVRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T + ++I   +V  F     LK+ +   
Sbjct: 61 RNPRTKEVIQIKKAKVPKFVPGKALKEIVNGG 92


>gi|171058612|ref|YP_001790961.1| histone family protein DNA-binding protein [Leptothrix cholodnii
           SP-6]
 gi|170776057|gb|ACB34196.1| histone family protein DNA-binding protein [Leptothrix cholodnii
           SP-6]
          Length = 116

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 50/93 (53%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
             T+ +S+L++ I+++  +S+  + R +  L   +  +  +G+++ +  F TF V ++ +
Sbjct: 24  GPTVNKSELIEHIAEKADISKAAAARALEALIGGVKSTLKKGDSVSLVGFGTFAVTKRAA 83

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           R GRN +T   +KI   +V  F+    LK  + 
Sbjct: 84  RSGRNPRTGAVIKIKSSKVPKFRPGKALKDSLN 116


>gi|219849666|ref|YP_002464099.1| histone family protein DNA-binding protein [Chloroflexus
          aggregans DSM 9485]
 gi|219543925|gb|ACL25663.1| histone family protein DNA-binding protein [Chloroflexus
          aggregans DSM 9485]
          Length = 91

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 53/91 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D +K++++   +S+K++ + + T    I ++  RGE + ++ F TF V+ + +R G
Sbjct: 1  MQKTDFIKAVAERAKVSQKETKQIIDTALEVITEALARGEKVTLTGFGTFEVRSRQAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N QT +++ I   +   F ASS LK+ +  
Sbjct: 61 VNPQTREKIHIPATKTPGFSASSTLKEAVKG 91


>gi|51246021|ref|YP_065905.1| DNA-binding protein HU [Desulfotalea psychrophila LSv54]
 gi|50877058|emb|CAG36898.1| probable DNA-binding protein HU [Desulfotalea psychrophila LSv54]
          Length = 90

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L++SI+    +S+  + + +      I ++  +G+ + +  F TF V ++ +R G
Sbjct: 1  MNKKELIESIADAADISKGAAEKALNGTLAAIAETLKKGDKVTLVGFGTFSVSKREARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +TN+ +KI  + +  FKA S L + I 
Sbjct: 61 RNPRTNEVIKIPAKNIAKFKAGSKLSEAIN 90


>gi|282855395|ref|ZP_06264718.1| histone family protein DNA-binding protein [Pyramidobacter
          piscolens W5455]
 gi|282586775|gb|EFB92020.1| histone family protein DNA-binding protein [Pyramidobacter
          piscolens W5455]
          Length = 112

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV+ + ++  L + D+   V  +   + D+  +   ++I  F TF V+Q+ +R G
Sbjct: 1  MTKAELVEFVREKTNLRKVDAANAVAAMLEGVKDTLQKQGKVQIVGFGTFEVRQRSARTG 60

Query: 65 RNLQ-TNQEVKIDPRRVVVFKASSILKKRI 93
          RN Q  ++ V I  ++V VFKA  +L++ +
Sbjct: 61 RNPQDPSKTVHIPAKKVPVFKAGKLLREAV 90


>gi|85713207|ref|ZP_01044236.1| Bacterial nucleoid DNA-binding protein, IHF beta subunit
          [Idiomarina baltica OS145]
 gi|85692980|gb|EAQ30949.1| Bacterial nucleoid DNA-binding protein, IHF beta subunit
          [Idiomarina baltica OS145]
          Length = 94

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++ +   L  +     V  +  ++  S  +G  I+I  F +F +  +  R+
Sbjct: 1  MTKSELIEKLTLKFSDLPPRTVESSVKDILEQMIQSLAKGRRIEIRGFGSFSLHYRAPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T  +V++D + V  FK    L++R+ +
Sbjct: 61 GRNPKTGDQVELDGKYVPHFKPGKELRERVDN 92


>gi|268686838|ref|ZP_06153700.1| integration host factor subunit beta [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268627122|gb|EEZ59522.1| integration host factor subunit beta [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 104

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 5   ITRSDLVKSISK------EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
           +T+S+L+  +++         L  KD    V  L + +  S  RG+ I+I  F +F +  
Sbjct: 1   MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKFLVDTMTRSLARGQRIEIRGFGSFDLNH 60

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           + +R+GRN +T + V++  + V  FK    L++R+   ++
Sbjct: 61  RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERVDLALK 100


>gi|218297163|ref|ZP_03497825.1| histone family protein DNA-binding protein [Thermus aquaticus
          Y51MC23]
 gi|218242440|gb|EED08979.1| histone family protein DNA-binding protein [Thermus aquaticus
          Y51MC23]
          Length = 97

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 50/93 (53%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+T++DLV  ++   GL +KD+   +     ++ ++   G  ++++ F TF V+++ +R
Sbjct: 5  KTVTKADLVDQVAAAAGLKKKDAKAAIDAFLAKVEEALAAGNKVQLTGFGTFEVRKRKAR 64

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           G    T +++KI   +   FK    LK ++  
Sbjct: 65 TGVKPGTKEKIKIPATQYPAFKPGKALKDKVKK 97


>gi|269468323|gb|EEZ79999.1| bacterial nucleoid DNA-binding protein [uncultured SUP05 cluster
          bacterium]
          Length = 95

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 49/87 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++T+ D+V ++ +   +S   +       F+ I  +   GE +K+S F  F+++QK +R 
Sbjct: 2  SVTKKDIVDALVERLSMSHNQALVVTNEFFDSIKQTLALGEDVKLSGFGNFNIRQKSARP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
          GRN +T + V I  R+VV FKA   LK
Sbjct: 62 GRNPKTGETVTISARKVVTFKAGPKLK 88


>gi|162148812|ref|YP_001603273.1| DNA-binding protein HU [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545440|ref|YP_002277669.1| histone family protein DNA-binding protein [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|161787389|emb|CAP56984.1| DNA-binding protein HU [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533117|gb|ACI53054.1| histone family protein DNA-binding protein [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 94

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 46/93 (49%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M K + + +LV +++ +  L +  +   V  +F+ I  +  + + +++  F TF    + 
Sbjct: 1  MEKPLNKQELVAAVADDADLPKAKAGEVVDAVFSAIEKALSKKQEVRLVGFGTFVTATRK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +  GRN +T +E+ I     V FK    LK+ +
Sbjct: 61 AAKGRNPRTGEEIDIPASTSVRFKPGKNLKEAV 93


>gi|1093154|prf||2103146A HU protein
          Length = 94

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +++++  +++K +   +T     I ++   G+ + +  F +F  +++ +R G
Sbjct: 1  MNKGELVDAVAEKASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +TN++++I   RV  F A  + ++++ 
Sbjct: 61 RNPKTNEKMEIPATRVPAFSAGKLEREKVA 90


>gi|332523074|ref|ZP_08399326.1| DNA-binding protein HU-beta [Streptococcus porcinus str.
          Jelinkova 176]
 gi|332314338|gb|EGJ27323.1| DNA-binding protein HU-beta [Streptococcus porcinus str.
          Jelinkova 176]
          Length = 91

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 48/89 (53%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  I     +GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATDLTKKDSAAAVDAVFAAIEGFLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E++I   +V  FKA   LK  + 
Sbjct: 63 NPQTGAEIEIAASKVPAFKAGKALKDAVK 91


>gi|268609259|ref|ZP_06142986.1| nucleoid DNA-binding protein [Ruminococcus flavefaciens FD-1]
          Length = 92

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L+ +++++   ++K++   V  +   I D+   GE + I  F TF V+ +  +  
Sbjct: 1  MTKTELISAVAEKTDFTKKNAESAVNAMIAAITDALASGEKVSIVGFGTFEVRDRKEKQV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N QT + +     +   FKA   LK  + +
Sbjct: 61 INPQTKKMMTAPASKAPAFKAGQALKNAVNN 91


>gi|325982744|ref|YP_004295146.1| histone family protein DNA-binding protein [Nitrosomonas sp.
          AL212]
 gi|325532263|gb|ADZ26984.1| histone family protein DNA-binding protein [Nitrosomonas sp.
          AL212]
          Length = 90

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++I+K   +S+  +   +      I  +  + E++ +  F TF V  + +R G
Sbjct: 1  MNKSELIEAIAKSAKISKASAGSALDGALTAIKGALKKNESVTLVGFGTFKVGTRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   +V  F A   LK  + 
Sbjct: 61 RNPRTGAAIKIKAAKVPKFSAGKALKDAVN 90


>gi|160891545|ref|ZP_02072548.1| hypothetical protein BACUNI_03997 [Bacteroides uniformis ATCC
          8492]
 gi|270295354|ref|ZP_06201555.1| DNA-binding protein HU-beta [Bacteroides sp. D20]
 gi|317478350|ref|ZP_07937514.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36]
 gi|156858952|gb|EDO52383.1| hypothetical protein BACUNI_03997 [Bacteroides uniformis ATCC
          8492]
 gi|270274601|gb|EFA20462.1| DNA-binding protein HU-beta [Bacteroides sp. D20]
 gi|316905509|gb|EFV27299.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36]
          Length = 88

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 49/85 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ E GLS+ DS + +      +  +   G+ + +  F TF V ++G+R+G
Sbjct: 1  MNKAELISAMAAESGLSKTDSKKALDAFIASVTKAMKAGDKVSLVGFGTFSVVERGARMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N  T + ++I  ++VV FK  + L
Sbjct: 61 INPSTKKPIEIAAKKVVKFKPGTEL 85


>gi|297568603|ref|YP_003689947.1| histone family protein DNA-binding protein [Desulfurivibrio
          alkaliphilus AHT2]
 gi|296924518|gb|ADH85328.1| histone family protein DNA-binding protein [Desulfurivibrio
          alkaliphilus AHT2]
          Length = 90

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV+ ++K  G+S+  + + +    + I  +  +G+ + +  F TF V ++ +R G
Sbjct: 1  MNKSELVEQMAKAGGISKATAEKALAGALDGITKALKKGDKVTLVGFGTFSVTKRAARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + + I  R+V  FKA S L   + 
Sbjct: 61 RNPQTGKPITIKARKVARFKAGSKLSDAVK 90


>gi|160947371|ref|ZP_02094538.1| hypothetical protein PEPMIC_01305 [Parvimonas micra ATCC 33270]
 gi|158446505|gb|EDP23500.1| hypothetical protein PEPMIC_01305 [Parvimonas micra ATCC 33270]
          Length = 92

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ S++++  +++ D+ R +      + ++ V+GE +++  F TF  +++ +R G
Sbjct: 1  MNKSELLASMAEKGKITKVDAERALNAFIQTVEETLVKGEKVQLVGFGTFEARERKARSG 60

Query: 65 RNLQT-NQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +   + +KI   +  VFKA   LK+ +  
Sbjct: 61 RNPRNPKEVIKIPASKAPVFKAGKSLKEIVNK 92


>gi|251771160|gb|EES51742.1| histone family protein DNA-binding protein [Leptospirillum
           ferrodiazotrophum]
          Length = 98

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 47/97 (48%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L++ ++K   LS+KD    V      I  S  +GE + I  F TF    + +R G
Sbjct: 1   MNKTELIEKVAKSSKLSKKDVHAVVDGFLKSIEASMKKGEKVTIVGFGTFGTVSRKARTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           RN +T +E+KI  +    F     L++ +      +K
Sbjct: 61  RNPKTGKEIKIAAKTAPKFSPGKALRESVNSKAAPKK 97


>gi|319779317|ref|YP_004130230.1| Integration host factor beta subunit [Taylorella equigenitalis
          MCE9]
 gi|317109341|gb|ADU92087.1| Integration host factor beta subunit [Taylorella equigenitalis
          MCE9]
          Length = 109

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 55/95 (57%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ + ++     + +D    V T+ + +  S  +G  I+I  F +F + Q+  RV
Sbjct: 1  MTKSELIDALVASYPQFATRDMDIAVKTILDAMTLSLAQGHRIEIRGFGSFSLSQRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T + V++  +RV  FKA   L++++ ++ +
Sbjct: 61 GRNPRTGEMVEVVGKRVPHFKAGKELREKVDEEFK 95


>gi|206889442|ref|YP_002249053.1| integration host factor alpha-subunit [Thermodesulfovibrio
          yellowstonii DSM 11347]
 gi|206741380|gb|ACI20437.1| integration host factor alpha-subunit [Thermodesulfovibrio
          yellowstonii DSM 11347]
          Length = 94

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/93 (40%), Positives = 59/93 (63%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  I +  GL R +  + V T+F  + ++    E +KIS F  F V++KGSR+G
Sbjct: 1  MTKADLVNFIFERVGLPRTEIHKIVETVFETMKEALQEEEVVKISGFGVFTVRRKGSRIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          RN +T Q V+I PR+VV F+ S  LK+ I  ++
Sbjct: 61 RNPKTMQIVEIKPRKVVTFRPSEQLKQSIQKNI 93


>gi|238897931|ref|YP_002923611.1| HU, DNA-binding transcriptional regulator, alpha subunit-2
          [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
          pisum)]
 gi|238898508|ref|YP_002924189.1| DNA-binding protein HU-alpha (HU-2) [Candidatus Hamiltonella
          defensa 5AT (Acyrthosiphon pisum)]
 gi|229465689|gb|ACQ67463.1| HU, DNA-binding transcriptional regulator, alpha subunit-2
          [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
          pisum)]
 gi|229466267|gb|ACQ68041.1| DNA-binding protein HU-alpha (HU-2) [Candidatus Hamiltonella
          defensa 5AT (Acyrthosiphon pisum)]
          Length = 119

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ +  + GL++  ST  VT +F+ I ++  + E ++I  F TF V+ +  R+ 
Sbjct: 1  MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIEALGKKEPVQIIRFGTFKVRHRKERIS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +++K   R V VF A   LK  +
Sbjct: 61 RNPKTGEKIKTPAREVAVFSAGKSLKDSV 89


>gi|87312362|ref|ZP_01094454.1| probable DNA-binding protein HU [Blastopirellula marina DSM 3645]
 gi|87284927|gb|EAQ76869.1| probable DNA-binding protein HU [Blastopirellula marina DSM 3645]
          Length = 159

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 62/112 (55%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S+ +T+ ++VK+IS+E GL++  +   V   FN I D+ V    I++ +F  F VK++ +
Sbjct: 17  SRVVTKKEIVKTISEEIGLTQLKTKEIVQKTFNAIVDTLVEDGRIELRNFGVFEVKKRAA 76

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           R  RN +T ++V +  + VV FK    +++R+       +  ++     SGS
Sbjct: 77  RKARNPRTGEKVYVPSKFVVTFKPGKEMEERVRQMEEAERRREEAEAMASGS 128


>gi|222055458|ref|YP_002537820.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32]
 gi|221564747|gb|ACM20719.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32]
          Length = 93

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  + +    LSRK+S   ++ +F+ + D+   GE ++I  F +F ++ + +R 
Sbjct: 1  MTKSELIDKLVEANSVLSRKESEAIISIVFDSMSDALKSGEKVEIRGFGSFTIRARDARE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN ++ + VKI  ++   FK    L++R+ 
Sbjct: 61 ARNPKSGELVKIPSKKTPFFKTGKELRERVN 91


>gi|62296616|sp|P19436|DBH_THET8 RecName: Full=DNA-binding protein HU; AltName: Full=DNA-binding
          protein II; AltName: Full=TL29
          Length = 96

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 51/93 (54%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+T++DLV  +++  GL +KD    V  L  ++ ++   G  ++++ F TF V+++ +R
Sbjct: 4  KTVTKADLVDQVAQATGLKKKDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           G    T +++KI   +   FK    LK ++  
Sbjct: 64 TGVKPGTKEKIKIPATQYPAFKPGKALKDKVKK 96


>gi|58038572|ref|YP_190536.1| DNA-binding protein HU [Gluconobacter oxydans 621H]
 gi|58000986|gb|AAW59880.1| DNA-binding protein HU [Gluconobacter oxydans 621H]
          Length = 94

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 45/93 (48%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M K + + +L+ +++    L +  ++  V  +F+ I  +  + + +++  F +F    + 
Sbjct: 1  MEKPLNKQELIAAVADAADLPKAKASEVVDAVFSTIEATLAKKQEVRLVGFGSFVTATRK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +  GRN +T +E+ I     V FK    LK  +
Sbjct: 61 AAKGRNPRTGEEIDIPASTSVRFKPGKGLKDAV 93


>gi|118579779|ref|YP_901029.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
 gi|118502489|gb|ABK98971.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
          Length = 92

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + +E   L+ K S   V T+F+ I D+   G+ ++I  F +F ++++  R 
Sbjct: 1  MTKSELIEKVVQEHAVLNMKVSEMLVNTVFDSIEDALRAGDKVEIRGFGSFTIRERTGRE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN ++ + V I  ++   FK    LK+R+ 
Sbjct: 61 ARNPKSGEVVSIPAKKTPFFKTGKDLKERVN 91


>gi|258592128|emb|CBE68433.1| Integration host factor beta-subunit (IHF-beta) [NC10 bacterium
           'Dutch sediment']
          Length = 107

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE--AIKISSFATFHVKQKGSR 62
           +T++DLV+ ++ +  L+++D+   V T+   I  +    +   +++  F +F  +Q+ +R
Sbjct: 15  MTKADLVELVAAQVYLTKRDTEVVVDTILESIAKALASEDDGKVELRGFGSFRTRQRRAR 74

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            GRN Q+ + V +  +R+  FK    L++ I
Sbjct: 75  QGRNPQSGKAVHVPSKRIPFFKPGKELRQII 105


>gi|15602665|ref|NP_245737.1| HimD [Pasteurella multocida subsp. multocida str. Pm70]
 gi|14194850|sp|Q9CML8|IHFB_PASMU RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|12721104|gb|AAK02884.1| HimD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 94

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + ++   ++ KD    V  + +++  +   G+ I++  F +F +  +  R+
Sbjct: 1  MTKSELIERLVQKCHAVAAKDVENAVKEILDQMSFALESGKRIEVRGFGSFSLHYRQPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++VK+D + V  FKA   L++R+
Sbjct: 61 GRNPKTGEQVKLDAKSVPHFKAGKELRERV 90


>gi|163846249|ref|YP_001634293.1| histone family protein DNA-binding protein [Chloroflexus
          aurantiacus J-10-fl]
 gi|222524004|ref|YP_002568474.1| histone family protein DNA-binding protein [Chloroflexus sp.
          Y-400-fl]
 gi|163667538|gb|ABY33904.1| histone family protein DNA-binding protein [Chloroflexus
          aurantiacus J-10-fl]
 gi|222447883|gb|ACM52149.1| histone family protein DNA-binding protein [Chloroflexus sp.
          Y-400-fl]
          Length = 91

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D +K++++   +S+K++   +      I ++  RGE + ++ F TF V+ + +R G
Sbjct: 1  MQKTDFIKAVAERAKVSQKETKLIIDAALEVITEALARGEKVTLTGFGTFEVRSRQAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N QT +++ I   +   F ASS LK+ +  
Sbjct: 61 VNPQTREKMHIPATKTPGFSASSTLKEAVRG 91


>gi|315633974|ref|ZP_07889263.1| integration host factor beta subunit [Aggregatibacter segnis ATCC
          33393]
 gi|315477224|gb|EFU67967.1| integration host factor beta subunit [Aggregatibacter segnis ATCC
          33393]
          Length = 94

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + ++   +  K     V  +  ++      GE I++  F +F +  +  R+
Sbjct: 1  MTKSELIELLVQKNHNVPVKSVEEAVKAILEQMSYVLESGERIEVRGFGSFSLHCRQPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T ++VK+D + V  FKA   L++R+
Sbjct: 61 GRNPKTGEQVKLDAKCVPYFKAGKELRERV 90


>gi|145590204|ref|YP_001156801.1| histone family protein DNA-binding protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048610|gb|ABP35237.1| HU family DNA-binding protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 106

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 50/94 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L+ +I+ +  +S+  +   + +  + I  +  +G+++++  F TF   ++ +R+G
Sbjct: 13  LNKAELIAAIADDAEISKAKAEFALNSAIDTIIKAVTKGDSVQLIGFGTFASGKRAARMG 72

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           RN +T + +KI   + V F A    K  +    +
Sbjct: 73  RNPKTGEPLKIAAAKTVKFSAGKAFKDSVNKRKK 106


>gi|221135421|ref|ZP_03561724.1| integration host factor, beta subunit [Glaciecola sp. HTCC2999]
          Length = 93

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ +   +  +  ++    V  L   +  +  RGE I+I  F +F +  +  R 
Sbjct: 1  MTKSELIEKLMTSYDEVQTREIEVAVKELLEYMAQTLQRGERIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + V++  + V  FK    L+ R+
Sbjct: 61 GRNPKTGELVELSGKYVPHFKPGKELRDRV 90


>gi|170698163|ref|ZP_02889242.1| histone family protein DNA-binding protein [Burkholderia
          ambifaria IOP40-10]
 gi|170136928|gb|EDT05177.1| histone family protein DNA-binding protein [Burkholderia
          ambifaria IOP40-10]
          Length = 91

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 41/90 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++S   G  +  +   +  +   +  +  RGEA++I  F +F    +  R G
Sbjct: 1  MNKNELIDAVSATTGAGKAHTETAIDAILQTVTQALARGEAVQIVGFGSFSTGARAERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T + + I   + V F A    K  + 
Sbjct: 61 RNPATGEAITIAAAKTVKFAAGKAFKDAVN 90


>gi|315126783|ref|YP_004068786.1| DNA-binding protein [Pseudoalteromonas sp. SM9913]
 gi|315015297|gb|ADT68635.1| DNA-binding protein [Pseudoalteromonas sp. SM9913]
          Length = 89

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 49/89 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++    L++K++   +T+L   I  S   G+ ++I  F TF +    +R G
Sbjct: 1  MNKAELVTAMAHTSELTKKEAQLALTSLQKVITKSLSEGDQVQIYGFGTFALSYYPARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT + ++I+     VFK +  LK  +
Sbjct: 61 RNPQTGEAIEIEGANKAVFKPAKALKDSL 89


>gi|148555324|ref|YP_001262906.1| histone family protein DNA-binding protein [Sphingomonas
          wittichii RW1]
 gi|148500514|gb|ABQ68768.1| histone family protein DNA-binding protein [Sphingomonas
          wittichii RW1]
          Length = 92

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+LV+ +S+    LS K+  + V+TLF+ I      G  +++  F  F  + + +R+
Sbjct: 1  MIRSELVQLLSQDNPDLSPKEVEKIVSTLFDAITKRLAEGGRVELRGFGAFSTRARDARI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T   V +  +RV  FK    ++ R+ 
Sbjct: 61 GRNPRTGDTVPVSAKRVPYFKPGKEMRVRLN 91


>gi|294670876|ref|ZP_06735732.1| hypothetical protein NEIELOOT_02580 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307363|gb|EFE48606.1| hypothetical protein NEIELOOT_02580 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 104

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 6/102 (5%)

Query: 5   ITRSDLVKSISK------EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
           +T+S+L+  +++         L  KD    V  L + +  S  RG+ I+I  F +F +  
Sbjct: 1   MTKSELMVRLAEVFAQKNGTHLLAKDVEYSVKILVDTMTRSLARGQRIEIRGFGSFDLNH 60

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           + +R GRN +T  +V +  + V  FK    L++R+   M   
Sbjct: 61  RPARQGRNPKTGDKVSVPEKYVPHFKPGKELRERVDRAMAAE 102


>gi|304391395|ref|ZP_07373337.1| DNA-binding protein HU-alpha [Ahrensia sp. R2A130]
 gi|303295624|gb|EFL89982.1| DNA-binding protein HU-alpha [Ahrensia sp. R2A130]
          Length = 91

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++ +  +++  +   +    + + D+   GE +++  F  F V ++ +R+G
Sbjct: 1  MNKQELISAMAGKADMNKDQAGAALEAFIDSVTDALKSGEEVRLLGFGNFVVTRREARMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT    +I    V  FK    LK +I 
Sbjct: 61 RNPQTGAATEIAAANVARFKVGKGLKDKIN 90


>gi|222102284|ref|YP_002546874.1| integration host factor, alpha subunit [Agrobacterium radiobacter
           K84]
 gi|221728401|gb|ACM31410.1| integration host factor, alpha subunit [Agrobacterium radiobacter
           K84]
          Length = 114

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/113 (45%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 1   MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           MS KT+TR+DL  ++ ++ GLSR +S+  V  +  EI D+ VRGE I +SSFA+  V  K
Sbjct: 1   MSMKTVTRADLAYAVFQKIGLSRTESSDLVEVVLGEIGDALVRGEPIGLSSFASLQVNAK 60

Query: 60  GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN-KDDVTSPS 111
             R GRN +T +EV I  RRVV F AS ++K RI    + RK   K     PS
Sbjct: 61  THRPGRNPRTGEEVLISARRVVKFTASDVMKSRIQKAHKTRKAKLKASPPDPS 113


>gi|150010179|ref|YP_001304922.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC
          8503]
 gi|255012559|ref|ZP_05284685.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_7]
 gi|256839002|ref|ZP_05544512.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
 gi|262382532|ref|ZP_06075669.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B]
 gi|298374554|ref|ZP_06984512.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
 gi|301308227|ref|ZP_07214181.1| DNA-binding protein HU [Bacteroides sp. 20_3]
 gi|149938603|gb|ABR45300.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC
          8503]
 gi|256739921|gb|EEU53245.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
 gi|262295410|gb|EEY83341.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B]
 gi|298268922|gb|EFI10577.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
 gi|300833697|gb|EFK64313.1| DNA-binding protein HU [Bacteroides sp. 20_3]
          Length = 90

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+ + +++++ GLS+ D+ + V    + + +    G  + +  F +F V +K +R G
Sbjct: 1  MNKSEFISAVAEKSGLSKVDAKKAVEAFVDTVSNELKEGGKVALLGFGSFSVSEKAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N +T + ++I  R+ V FKA + L + I 
Sbjct: 61 VNPKTKETIEIAARKAVKFKAGAELNELIK 90


>gi|258542723|ref|YP_003188156.1| histone-like DNA-binding protein HU [Acetobacter pasteurianus IFO
          3283-01]
 gi|329114677|ref|ZP_08243436.1| DNA-binding protein [Acetobacter pomorum DM001]
 gi|256633801|dbj|BAH99776.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-01]
 gi|256636860|dbj|BAI02829.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-03]
 gi|256639913|dbj|BAI05875.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-07]
 gi|256642969|dbj|BAI08924.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-22]
 gi|256646024|dbj|BAI11972.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-26]
 gi|256649077|dbj|BAI15018.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-32]
 gi|256652064|dbj|BAI17998.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-01-42C]
 gi|256655121|dbj|BAI21048.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-12]
 gi|326696157|gb|EGE47839.1| DNA-binding protein [Acetobacter pomorum DM001]
          Length = 95

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 43/95 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M K + + +LV ++++   L +  +   V  +F  I  +    + +++  F TF    + 
Sbjct: 1  MEKPLNKQELVSAVAEAVDLPKAKAGEVVDAVFGAIEKALSTKQEVRLVGFGTFVTATRK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +  GRN +T +E+ I     V FK    LK  +  
Sbjct: 61 AAKGRNPRTGEEIDIPASTSVRFKPGKALKDAVSG 95


>gi|213963610|ref|ZP_03391862.1| DNA-binding protein HU-beta [Capnocytophaga sputigena Capno]
 gi|213953738|gb|EEB65068.1| DNA-binding protein HU-beta [Capnocytophaga sputigena Capno]
          Length = 92

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 53/91 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+ E GL++ D+ + V   F+ +  S  +G+ + I  F ++ V +K +R  
Sbjct: 1  MNKTELIDAIAAEAGLTKADAKKAVEAFFSNVEKSLKQGKKVAIVGFGSWSVTKKEARDA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T   +K+  ++VV FKA + L + +  
Sbjct: 61 RNPRTGAVIKVPAKKVVKFKAGTELSESVNK 91


>gi|88799151|ref|ZP_01114731.1| probable DNA-binding protein [Reinekea sp. MED297]
 gi|88778134|gb|EAR09329.1| probable DNA-binding protein [Reinekea sp. MED297]
          Length = 95

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 45/91 (49%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + + +L  +I++   LS+  +   +  L ++I  S  + E++ +  F TF  + +  R 
Sbjct: 5  AMRKPELAAAIAERADLSKDKAGEVLNVLLDQITQSVAKKESVTLVGFGTFEARSRAKRK 64

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          G+N QT  E++I     V FKA   LK  + 
Sbjct: 65 GKNPQTGAEIEIPASNTVAFKAGKALKDAVN 95


>gi|145298939|ref|YP_001141780.1| integration host factor alpha-subunit [Aeromonas salmonicida
          subsp. salmonicida A449]
 gi|142851711|gb|ABO90032.1| integration host factor alpha-subunit [Aeromonas salmonicida
          subsp. salmonicida A449]
          Length = 81

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 45/76 (59%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
          +S++++   V   F EI  +  RGE +KIS F  F +++K  R GRN +T +++ I  RR
Sbjct: 1  MSKREAKDMVEAFFEEIRQALERGEQVKISGFGNFDLREKNQRPGRNPKTGEDIPISARR 60

Query: 80 VVVFKASSILKKRIMD 95
          VV F+    LK R+ +
Sbjct: 61 VVTFRPGQKLKARVEN 76


>gi|218667321|ref|YP_002425542.1| DNA-binding protein, HU family [Acidithiobacillus ferrooxidans
          ATCC 23270]
 gi|218519534|gb|ACK80120.1| DNA-binding protein, HU family [Acidithiobacillus ferrooxidans
          ATCC 23270]
          Length = 91

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 53/89 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+ DL + +S   GL+ K+    V  +F+ I  +   GE +K+S F  F + +K +R 
Sbjct: 2  TITKLDLTRHLSDTMGLTAKECAALVNAMFDTIRATLASGEDVKLSGFGNFILHEKRARP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +  +  +I  RRVV F+AS ++++R
Sbjct: 62 GRNPKNGEPFEIKARRVVTFRASQLVRER 90


>gi|254421741|ref|ZP_05035459.1| DNA-binding protein HU [Synechococcus sp. PCC 7335]
 gi|196189230|gb|EDX84194.1| DNA-binding protein HU [Synechococcus sp. PCC 7335]
          Length = 94

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 45/94 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +++++  +++K +   ++     I ++  +G+ + +  F +F  + +  R G
Sbjct: 1  MNKGELVDTVAEKSSVTKKQADAVISAAVESIMEAVSKGDKVTLVGFGSFEPRDRKEREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T   + I    V  F A    K+ +    +
Sbjct: 61 RNPKTGDTMVIPATTVPAFSAGKQFKEMVAGKKK 94


>gi|52843149|ref|YP_096948.1| integration host factor beta subunit [Legionella pneumophila
          subsp. pneumophila str. Philadelphia 1]
 gi|54295794|ref|YP_128209.1| hypothetical protein lpl2884 [Legionella pneumophila str. Lens]
 gi|54298959|ref|YP_125328.1| hypothetical protein lpp3026 [Legionella pneumophila str. Paris]
 gi|148361296|ref|YP_001252503.1| integration host factor subunit beta [Legionella pneumophila str.
          Corby]
 gi|296108635|ref|YP_003620336.1| integration host factor beta subunit [Legionella pneumophila
          2300/99 Alcoy]
 gi|52630260|gb|AAU29001.1| integration host factor beta subunit [Legionella pneumophila
          subsp. pneumophila str. Philadelphia 1]
 gi|53752744|emb|CAH14179.1| hypothetical protein lpp3026 [Legionella pneumophila str. Paris]
 gi|53755626|emb|CAH17128.1| hypothetical protein lpl2884 [Legionella pneumophila str. Lens]
 gi|148283069|gb|ABQ57157.1| integration host factor beta subunit [Legionella pneumophila str.
          Corby]
 gi|295650537|gb|ADG26384.1| integration host factor beta subunit [Legionella pneumophila
          2300/99 Alcoy]
          Length = 103

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ I+     L+ K     +  +   + ++ + G+ I+I  F +F +  +  R 
Sbjct: 1  MIKSELIEHIAARMTHLTEKQVADGINRILELMSEALIHGQRIEIRGFGSFSLHYRPPRN 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
            N +T ++V  + +    FK    L++R+   
Sbjct: 61 AHNPKTGEKVVTEAKYSPHFKPGKELRERVNSS 93


>gi|221104615|ref|XP_002170589.1| PREDICTED: similar to DNA binding protein hu-like protein [Hydra
          magnipapillata]
          Length = 90

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+  +S + GL++KDS + V ++F+ I       +  +   F +F+V+   +R G
Sbjct: 1  MNKQDLIDFVSAKTGLTKKDSGQAVDSVFDGIISGLKASKDARFVGFGSFNVQATMARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  E+ I     + FKA    K+ + 
Sbjct: 61 RNPRTGAEIDIPASNRITFKAGKEFKESVN 90


>gi|297564907|ref|YP_003683879.1| histone family protein DNA-binding protein [Meiothermus silvanus
          DSM 9946]
 gi|296849356|gb|ADH62371.1| histone family protein DNA-binding protein [Meiothermus silvanus
          DSM 9946]
          Length = 96

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 49/93 (52%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT T++DL+  I+   G+ +KD+   V    + + D+   G  ++++ F TF V+++ +R
Sbjct: 4  KTKTKADLIDMIASSSGMKKKDAKTAVDHFLSHLQDALASGNKVQLTGFGTFEVRKRKAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           G    T Q++KI       FK    LK+++  
Sbjct: 64 TGVKPGTTQKIKIPASSYPAFKPGKALKEKVKK 96


>gi|94263644|ref|ZP_01287453.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|94267151|ref|ZP_01290783.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|93452119|gb|EAT02793.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|93455949|gb|EAT06104.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
          Length = 92

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 53/92 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+++++    +  +++     T+   + D+   G+ I+I  F +F VK+  S  G
Sbjct: 1  MNKSDLIEALATASEIPNREAAAITRTILAAMGDALSDGDNIEIRGFGSFTVKEYDSYYG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T +++++ P+R+  FK    L++R+  +
Sbjct: 61 RNPKTGEKIRVAPKRMPFFKMGKELRERLNQE 92


>gi|186474390|ref|YP_001863361.1| histone family protein DNA-binding protein [Burkholderia phymatum
          STM815]
 gi|184198349|gb|ACC76311.1| histone family protein DNA-binding protein [Burkholderia phymatum
          STM815]
          Length = 92

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 40/92 (43%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++   G S+  +   +  +   +  +  RGE +++  F +F    +  R G
Sbjct: 1  MNKQELIDAVAATTGESKASTGETIDAIIETVTAAVTRGETVQLVGFGSFSTGARAERSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN  T + + I   + V F A    K  +   
Sbjct: 61 RNPSTGETITIPAAKTVKFSAGKAFKDVVNAA 92


>gi|328953767|ref|YP_004371101.1| histone family protein DNA-binding protein [Desulfobacca
          acetoxidans DSM 11109]
 gi|328454091|gb|AEB09920.1| histone family protein DNA-binding protein [Desulfobacca
          acetoxidans DSM 11109]
          Length = 95

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 51/92 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+++++K   L+ K +   V TLF  + ++ V+ E I+I  F +F VK      G
Sbjct: 1  MNKSQLIEALAKAENLTIKRAEMVVNTLFENMTNALVQDERIEIRGFGSFKVKCYEGYQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T + +++  +++  FK    LK+R+   
Sbjct: 61 RNPKTGEVIEVCDKKLPFFKVGKELKERVDSS 92


>gi|284108794|ref|ZP_06386459.1| Histone-like bacterial DNA-binding protein [Candidatus
          Poribacteria sp. WGA-A3]
 gi|283829868|gb|EFC34159.1| Histone-like bacterial DNA-binding protein [Candidatus
          Poribacteria sp. WGA-A3]
          Length = 91

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 55/90 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D+   I ++ G+S+ ++   V  +   + D   +GEA+KI+ F  F V+ KG R G
Sbjct: 1  MRKADIANYICEQVGVSKTEAMGLVEYVLQCMKDVLRKGEAVKIAGFGNFMVRNKGERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E+ I PRRVV F+AS I K+ + 
Sbjct: 61 RNPRTGEEIAITPRRVVTFRASQIFKRDVN 90


>gi|222101973|ref|YP_002546563.1| integration host factor alpha-subunit protein [Agrobacterium
           radiobacter K84]
 gi|221728090|gb|ACM31099.1| integration host factor alpha-subunit protein [Agrobacterium
           radiobacter K84]
          Length = 117

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/101 (43%), Positives = 65/101 (64%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+TR+D+  SI ++ GLSR +S   V T+  EIC + +RGE + +SSFA F+V++K  R
Sbjct: 4   KTLTRADITHSIIRQIGLSRTESAELVDTILEEICSALIRGENVGLSSFAAFNVREKSRR 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
            GRN +T ++ +I  RRV+ F AS  +K +I     GRK  
Sbjct: 64  PGRNPKTGEDYQIAARRVISFTASDAVKTQIQKAHVGRKMK 104


>gi|153208209|ref|ZP_01946619.1| integration host factor, beta subunit [Coxiella burnetii 'MSU Goat
           Q177']
 gi|154706842|ref|YP_001423686.1| integration host factor beta-subunit [Coxiella burnetii Dugway
           5J108-111]
 gi|165923951|ref|ZP_02219783.1| integration host factor, beta subunit [Coxiella burnetii RSA 334]
 gi|212217938|ref|YP_002304725.1| integration host factor beta-subunit [Coxiella burnetii CbuK_Q154]
 gi|120576114|gb|EAX32738.1| integration host factor, beta subunit [Coxiella burnetii 'MSU Goat
           Q177']
 gi|154356128|gb|ABS77590.1| integration host factor beta-subunit [Coxiella burnetii Dugway
           5J108-111]
 gi|165916607|gb|EDR35211.1| integration host factor, beta subunit [Coxiella burnetii RSA 334]
 gi|212012200|gb|ACJ19580.1| integration host factor beta-subunit [Coxiella burnetii CbuK_Q154]
          Length = 112

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 4/111 (3%)

Query: 5   ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+L+  I+ ++  LS KD    V  +   + ++  +G+ I+I  F +F +  + +R 
Sbjct: 1   MVKSELINRIAMQQKALSWKDVELSVNYILEYMSNTLGQGDRIEIRGFGSFSLHYRPTRK 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG---RKCNKDDVTSPS 111
             N +T + V  + +    FK    L+ R+ D+      R+ N  D    +
Sbjct: 61  AHNPKTGERVYTEAKYTPHFKPGKDLRDRVNDNRHQFPIREVNNGDGEDAA 111


>gi|303236678|ref|ZP_07323259.1| DNA-binding protein HU [Prevotella disiens FB035-09AN]
 gi|302483182|gb|EFL46196.1| DNA-binding protein HU [Prevotella disiens FB035-09AN]
          Length = 91

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+   GLS+ D+ + +      I ++ V G+ +++  F T+ V ++ +  G
Sbjct: 1  MNKTELIEKIAAGAGLSKVDAKKALDATTAAIKEALVAGDKVQLVGFGTYSVTERPAHEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T ++++I  ++V  FK  + L   + 
Sbjct: 61 INPATKEKIQIAAKKVAKFKPGAELADAVN 90


>gi|29655026|ref|NP_820718.1| integration host factor beta-subunit [Coxiella burnetii RSA 493]
 gi|161830808|ref|YP_001597559.1| integration host factor, beta subunit [Coxiella burnetii RSA 331]
 gi|212211779|ref|YP_002302715.1| integration host factor beta-subunit [Coxiella burnetii CbuG_Q212]
 gi|29542295|gb|AAO91232.1| integration host factor beta-subunit [Coxiella burnetii RSA 493]
 gi|161762675|gb|ABX78317.1| integration host factor, beta subunit [Coxiella burnetii RSA 331]
 gi|212010189|gb|ACJ17570.1| integration host factor beta-subunit [Coxiella burnetii CbuG_Q212]
          Length = 112

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 4/111 (3%)

Query: 5   ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+L+  I+ ++  LS KD    V  +   + ++  +G+ I+I  F +F +  +  R 
Sbjct: 1   MVKSELINRIAMQQKALSWKDVELSVNYILEYMSNTLGQGDRIEIRGFGSFSLHYRPRRK 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG---RKCNKDDVTSPS 111
             N +T + V  + +    FK    L+ R+ D+      R+ N  D    +
Sbjct: 61  AHNPKTGERVYTEAKYTPHFKPGKDLRDRVNDNRHQFPIREVNNGDGEDAA 111


>gi|297538181|ref|YP_003673950.1| histone family protein DNA-binding protein [Methylotenera sp.
          301]
 gi|297257528|gb|ADI29373.1| histone family protein DNA-binding protein [Methylotenera sp.
          301]
          Length = 90

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+   GL++ D+ R +      I  +   G+A+ +  F TF V Q+ +R G
Sbjct: 1  MNKSELIDAIAASAGLTKADAGRAIDATTAAITAALKNGDAVTLVGFGTFKVTQRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T  E+KI  R+   F A   LK  + 
Sbjct: 61 RNPRTGAELKIAARKAPAFTAGKTLKDSVN 90


>gi|239616737|ref|YP_002940059.1| histone family protein DNA-binding protein [Kosmotoga olearia TBF
          19.5.1]
 gi|239505568|gb|ACR79055.1| histone family protein DNA-binding protein [Kosmotoga olearia TBF
          19.5.1]
          Length = 90

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV  I+   G+++K +   +      + +   +GE +K+  F TF V  +  R G
Sbjct: 1  MNKKELVAEIAGRTGVTKKRAAEILDCFIEIVGEKLSKGEEVKLVGFGTFEVATRKPRKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N +T + +KI   +V  F+A   LK+++ 
Sbjct: 61 VNPRTKKPIKIPGGKVPKFRAGKELKEKVK 90


>gi|302877955|ref|YP_003846519.1| integration host factor, beta subunit [Gallionella
          capsiferriformans ES-2]
 gi|302580744|gb|ADL54755.1| integration host factor, beta subunit [Gallionella
          capsiferriformans ES-2]
          Length = 97

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRS+L+  ++ +F  L+  D    V T+ +E+  +  RG  I+I  F +F +  +  R 
Sbjct: 1  MTRSELIVQLAAKFPQLTNSDIDMAVRTILDEMSRTLARGNRIEIRGFGSFGLNHRPPRK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++   V +  + V  FK    L++R+
Sbjct: 61 GRNPKSGVNVMVPAKYVPHFKTGKELRERV 90


>gi|77360230|ref|YP_339805.1| DNA-binding protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76875141|emb|CAI86362.1| DNA-binding protein HU-alpha (HU-2), likely to play a role in DNA
          replication and in rpo translation [Pseudoalteromonas
          haloplanktis TAC125]
          Length = 89

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV +++++  L++KD+   +T+L   I  S   G+ ++I+ F TF +    +R G
Sbjct: 1  MNKAQLVTAMAQKSELTKKDAQAALTSLQKVITKSLAEGDQVQINGFGTFALSYYPARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN QT   ++I+     VFKAS  LK 
Sbjct: 61 RNPQTGASIEIEGANKAVFKASKALKD 87


>gi|261377756|ref|ZP_05982329.1| integration host factor, beta subunit [Neisseria cinerea ATCC
           14685]
 gi|269146042|gb|EEZ72460.1| integration host factor, beta subunit [Neisseria cinerea ATCC
           14685]
          Length = 104

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 6/100 (6%)

Query: 5   ITRSDLVKSISK------EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
           +T+S+L+  +++         L  KD    V  L + +  S  RG+ I+I  F +F +  
Sbjct: 1   MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           + +R+GRN +T   V++  + V  FK    L++R+   ++
Sbjct: 61  RPARIGRNPKTGDRVEVPEKHVPHFKPGKELRERVDLALK 100


>gi|160942315|ref|ZP_02089624.1| hypothetical protein CLOBOL_07201 [Clostridium bolteae ATCC
          BAA-613]
 gi|158434872|gb|EDP12639.1| hypothetical protein CLOBOL_07201 [Clostridium bolteae ATCC
          BAA-613]
          Length = 92

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  LV  +S   GL+ K S + +  L + I      G  + +  F  F V  + +R+ 
Sbjct: 1  MNKRQLVDRMSSGSGLTMKQSEKALNGLMDVIHSELSSGGNVSLIGFGVFSVADRKARMA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E+++  R++ VFKA S LK+ + 
Sbjct: 61 RNPKTGEEMEVKARKIPVFKAGSTLKRAVN 90


>gi|167763758|ref|ZP_02435885.1| hypothetical protein BACSTE_02138 [Bacteroides stercoris ATCC
          43183]
 gi|167697874|gb|EDS14453.1| hypothetical protein BACSTE_02138 [Bacteroides stercoris ATCC
          43183]
          Length = 88

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 47/85 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++ E GLS+ DS R +      +  +   G+ + +  F TF V ++  R+G
Sbjct: 1  MNKSELISAMAAEGGLSKADSKRALDAFIASVTKALKAGDKVALVGFGTFSVMERAGRIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N  T + ++I+ ++V  FK  S L
Sbjct: 61 INPATKKPIQIEAKKVAKFKPGSEL 85


>gi|83643450|ref|YP_431885.1| nucleoid DNA-binding protein [Hahella chejuensis KCTC 2396]
 gi|83631493|gb|ABC27460.1| Bacterial nucleoid DNA-binding protein [Hahella chejuensis KCTC
          2396]
          Length = 91

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L  +I+    LS+  +   +  L +EI D+  R E + +  F TF  + + +R G
Sbjct: 1  MRKPELAAAIAARTNLSKSKAAEVLNALTDEIADAVSRNETVSLIGFGTFSQRNRSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +N +T   +KI   + V FKA  +LK  +  
Sbjct: 61 KNPKTGAAIKIPASKTVGFKAGKLLKDAVNK 91


>gi|87198191|ref|YP_495448.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans
          DSM 12444]
 gi|87133872|gb|ABD24614.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans
          DSM 12444]
          Length = 93

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L+++++KE  G+  ++  R V   F+EI      G  +++  F  F  +++ +R 
Sbjct: 1  MIRSELLQALAKESPGMRSEEIERVVDVFFDEIAKRLAEGGRVELRGFGAFSTRERDARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V++  ++V  FKA   +++R+  D
Sbjct: 61 GRNPRTGETVEVPGKKVPYFKAGKEMRQRLNAD 93


>gi|315499460|ref|YP_004088263.1| histone family protein DNA-binding protein [Asticcacaulis
          excentricus CB 48]
 gi|315417472|gb|ADU14112.1| histone family protein DNA-binding protein [Asticcacaulis
          excentricus CB 48]
          Length = 91

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  SDL+  I+ E G+++  +   V T+F  I ++AV G+ + + SF  F V+ K +R G
Sbjct: 1  MNTSDLIDKIATEHGVTKVAAKAIVDTVFGSIVEAAVLGQEVNLPSFGKFKVQDKPAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T   ++I   + +VF+    LK R+ 
Sbjct: 61 RNPSTGATIQIAASKKLVFQPGKALKDRLN 90


>gi|51246635|ref|YP_066519.1| integration host factor, alpha-subunit [Desulfotalea psychrophila
          LSv54]
 gi|50877672|emb|CAG37512.1| probable integration host factor, alpha-subunit [Desulfotalea
          psychrophila LSv54]
          Length = 94

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 4  TITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T+T++DL++ + K+  GL++  +T  V        D+ + G  + +S F  F+VK K SR
Sbjct: 2  TLTKADLIQQVYKKHEGLTKAQATESVEAFLRISKDALISGSDLLLSGFGKFNVKDKSSR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT  E+ ++ RRVV FK S IL+ +I 
Sbjct: 62 RGRNPQTGDELTLEARRVVTFKPSGILRDKIN 93


>gi|195953425|ref|YP_002121715.1| histone family protein DNA-binding protein [Hydrogenobaculum sp.
          Y04AAS1]
 gi|195933037|gb|ACG57737.1| histone family protein DNA-binding protein [Hydrogenobaculum sp.
          Y04AAS1]
          Length = 89

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 51/87 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  ++++  +++  + + V  +F+ + +S  + E   I  F TF V  + +R G
Sbjct: 1  MTKTELVSYVAQQADITKAKAEKCVNAVFSALAESLKKKERTTIPGFGTFTVSTRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T QE+KI  R   V++ S  LKK
Sbjct: 61 RNPKTGQEIKIPARTTAVWRPSKELKK 87


>gi|313672997|ref|YP_004051108.1| histone family protein DNA-binding protein [Calditerrivibrio
          nitroreducens DSM 19672]
 gi|312939753|gb|ADR18945.1| histone family protein DNA-binding protein [Calditerrivibrio
          nitroreducens DSM 19672]
          Length = 92

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 58/90 (64%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I +  G+S+KD  + V ++FN+I D  +    +KIS F +F VK +G R+G
Sbjct: 1  MTKADIVDIIYETLGISKKDIYKVVDSVFNKIKDEILSKNNVKISGFGSFEVKTRGRRIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T +E  I+ R VV FK S +LK+ + 
Sbjct: 61 RNPKTGEEKVIEARTVVSFKPSRLLKEEVN 90


>gi|240949275|ref|ZP_04753619.1| integration host factor subunit beta [Actinobacillus minor NM305]
 gi|240296391|gb|EER47035.1| integration host factor subunit beta [Actinobacillus minor NM305]
          Length = 93

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ ++ S+   L        V  +  +I  S   GE I+I  F +F +  + +RV
Sbjct: 1  MTKSELIDNLFSQNPSLHLSMVEDGVKEILEKIMFSLENGERIEIRGFGSFSLHHRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + VK++ + V  FKA   LK+R+
Sbjct: 61 GRNPKTGESVKLEAKSVPHFKAGKELKERV 90


>gi|33602628|ref|NP_890188.1| histone-like DNA-binding protein [Bordetella bronchiseptica RB50]
 gi|33577070|emb|CAE35626.1| histone-like DNA-binding protein [Bordetella bronchiseptica RB50]
          Length = 93

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 48/91 (52%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++T+ DL+ ++S E G SR+D+   V  L + I +  + GE   +     F   Q+ +R 
Sbjct: 2  SLTKKDLIATLSYETGFSRRDTENMVDVLTSTISEQLIAGEEFTLPGVGKFSTSQRAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN QT + V+I     V F AS  LK ++ 
Sbjct: 62 GRNPQTGEPVEIAASVAVKFSASKTLKDQVN 92


>gi|170288480|ref|YP_001738718.1| histone family protein DNA-binding protein [Thermotoga sp. RQ2]
 gi|7245986|pdb|1B8Z|A Chain A, Hu From Thermotoga Maritima
 gi|7245987|pdb|1B8Z|B Chain B, Hu From Thermotoga Maritima
 gi|388071|gb|AAA27416.1| Hu DNA-binding protein [Thermotoga maritima]
 gi|170175983|gb|ACB09035.1| histone family protein DNA-binding protein [Thermotoga sp. RQ2]
          Length = 90

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  ++K+ G  +KD    + T+   I ++  +GE ++I  F +F V++  +R G
Sbjct: 1  MNKKELIDRVAKKAGAKKKDVKLILDTILETITEALAKGEKVQIVGFGSFEVRKAAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N QT + + I  R+V  FK    LK+++ 
Sbjct: 61 VNPQTRKPITIPERKVPKFKPGKALKEKVK 90


>gi|307611843|emb|CBX01556.1| hypothetical protein LPW_32431 [Legionella pneumophila 130b]
          Length = 103

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ I+     L+ K     +  +   + ++ + G+ I+I  F +F +  +  R 
Sbjct: 1  MIKSELIEHIAARMTHLTEKQVADGINRILELMSEALIHGQRIEIRGFGSFSLHYRPPRN 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
            N +T ++V  + +    FK    L++R+   
Sbjct: 61 AHNPKTGEKVVTEAKYSPHFKPGKELRERVNSS 93


>gi|113461005|ref|YP_719072.1| integration host factor subunit alpha [Haemophilus somnus 129PT]
 gi|170717573|ref|YP_001784659.1| integration host factor subunit alpha [Haemophilus somnus 2336]
 gi|123031334|sp|Q0I3K4|IHFA_HAES1 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|189044702|sp|B0UU60|IHFA_HAES2 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|112823048|gb|ABI25137.1| integration host factor, alpha-subunit [Haemophilus somnus 129PT]
 gi|168825702|gb|ACA31073.1| integration host factor, alpha subunit [Haemophilus somnus 2336]
          Length = 97

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+ +L  S+ ++ GL++ ++ + V   F +I  S   GE +K+S F  F ++ K SR 
Sbjct: 2  ALTKIELKNSLIEQ-GLNKLEAKKVVEGFFEQIRVSLENGEDVKLSGFGNFELRDKSSRP 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + + +  RRVVVF+    L+ R+  
Sbjct: 61 GRNPKTGEAIPVSARRVVVFRPGQKLRSRVEK 92


>gi|237749146|ref|ZP_04579626.1| integration host factor subunit beta [Oxalobacter formigenes
          OXCC13]
 gi|229380508|gb|EEO30599.1| integration host factor subunit beta [Oxalobacter formigenes
          OXCC13]
          Length = 97

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ S++  +  L  KD+   V T+ + + D+   G+ I+I  F +F +  +  RV
Sbjct: 1  MTKSELIVSLAGSYPQLLAKDAELTVKTILDAMSDALANGQRIEIRGFGSFALSVRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ ++V ++ +RV  FK    L++R+
Sbjct: 61 GRNPRSGEKVMVEEKRVPHFKPGKELRQRV 90


>gi|332973006|gb|EGK10945.1| integration host factor beta subunit [Psychrobacter sp.
          1501(2011)]
          Length = 99

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 1/96 (1%)

Query: 1  MSKTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          M++ I +SDL++ +S     +S  +    V  +   + +  +    I++  F TF +  +
Sbjct: 1  MTEVINKSDLIQDVSARCDYISETEVDDAVREIIELLSEKLIENNRIEVRGFGTFCLHHR 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           +R GRN +T + V +  + +  FK    L++ + D
Sbjct: 61 EARQGRNPKTGEMVMVPQKSIPHFKPGKALREGVND 96


>gi|171464303|ref|YP_001798416.1| histone family protein DNA-binding protein [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193841|gb|ACB44802.1| histone family protein DNA-binding protein [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 106

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 49/94 (52%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L+ +I+ +  +S+  +   + +    I  +  +G+++++  F TF   ++ +R+G
Sbjct: 13  LNKAELIAAIADDAEISKAKAEFALNSAIENIIKAVTKGDSVQLIGFGTFASSKRAARMG 72

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           RN +T + +KI   + V F A    K  +    +
Sbjct: 73  RNPKTGEPLKIAAAKTVKFSAGKAFKDSVNKRKK 106


>gi|116747454|ref|YP_844141.1| histone family protein DNA-binding protein [Syntrophobacter
          fumaroxidans MPOB]
 gi|116696518|gb|ABK15706.1| histone family protein DNA-binding protein [Syntrophobacter
          fumaroxidans MPOB]
          Length = 95

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 55/91 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++ +V+++  +   ++ +S + + TLF  +  +   GE + IS F  F VK+K  R 
Sbjct: 2  TLTKAHIVENLFAKNIFTKTESAQIIETLFEIVKQTLEHGEDVLISGFGKFSVKEKNQRR 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN QT   + + PR+VV FK S +L++RI 
Sbjct: 62 GRNPQTGDPIMLSPRKVVTFKCSGVLRERIN 92


>gi|222099394|ref|YP_002533962.1| DNA-binding protein HU [Thermotoga neapolitana DSM 4359]
 gi|221571784|gb|ACM22596.1| DNA-binding protein HU [Thermotoga neapolitana DSM 4359]
          Length = 90

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV  ++K+ G  +KD    +  +   I ++  +GE +++  F +F V++  +R G
Sbjct: 1  MNKKELVDRVAKKAGAKKKDVKVILDAVLETITEALAKGEKVQLVGFGSFEVRKAAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N QT + + I  R+V  F+    LK+++ 
Sbjct: 61 VNPQTKKPITIPERKVPKFRPGKALKEKVK 90


>gi|149193907|ref|ZP_01871005.1| non-specific DNA-binding protein [Caminibacter mediatlanticus TB-2]
 gi|149135860|gb|EDM24338.1| non-specific DNA-binding protein [Caminibacter mediatlanticus TB-2]
          Length = 102

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 48/100 (48%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +SDLV +++++ GLS+KD    +      I ++   GE +    F +F V  +  RV 
Sbjct: 1   MKKSDLVAAVAEKTGLSKKDVAAVIDATIETIQEALKNGEKVSFIGFGSFEVVTRAPRVA 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           R   T +E+KI   + V FK    LK+ +      +K   
Sbjct: 61  RVPGTGKEIKIPETKSVKFKVGKKLKELVNSGKTTKKRGC 100


>gi|17548076|ref|NP_521478.1| histone-like DNA-binding protein HU-beta (NS1) [Ralstonia
          solanacearum GMI1000]
 gi|17430382|emb|CAD17147.1| probable histone-like dna-binding protein hu-beta (ns1)
          [Ralstonia solanacearum GMI1000]
          Length = 92

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++L+ +I+    GL++  + + +      I +S   G+ + +  F TF   ++  R+
Sbjct: 1  MTKTELIDAIASGVDGLTKAKAEQALNVTLQAIMESVGNGDTVSLIGFGTFSQGERAERM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN +T +E+K++  + V FKA    K  + 
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVN 91


>gi|77166413|ref|YP_344938.1| histone-like DNA-binding protein [Nitrosococcus oceani ATCC
          19707]
 gi|254435865|ref|ZP_05049372.1| DNA-binding protein HU [Nitrosococcus oceani AFC27]
 gi|76884727|gb|ABA59408.1| Histone-like DNA-binding protein [Nitrosococcus oceani ATCC
          19707]
 gi|207088976|gb|EDZ66248.1| DNA-binding protein HU [Nitrosococcus oceani AFC27]
          Length = 94

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 45/94 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  +  +  LS+  + R V  LF  I         + +  F +F V+++ +R G
Sbjct: 1  MNKTELVNFVVLKANLSQATAQRAVNALFQTITGVLSEEGRVNLVGFGSFSVQKRAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          R+ Q+ + + I  +    FK S  LK+ +    +
Sbjct: 61 RHPQSGEVIIIQAKSAPTFKPSKALKEIVQQRKQ 94


>gi|15643036|ref|NP_228079.1| DNA-binding protein, HU [Thermotoga maritima MSB8]
 gi|6226592|sp|P36206|DBH_THEMA RecName: Full=DNA-binding protein HU
 gi|4980764|gb|AAD35355.1|AE001709_1 DNA-binding protein, HU [Thermotoga maritima MSB8]
          Length = 90

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +L+  ++K+ G  +KD    + T+   I ++  +GE ++I  F +F V++  +R G
Sbjct: 1  MTKKELIDRVAKKAGAKKKDVKLILDTILETITEALAKGEKVQIVGFGSFEVRKAAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N QT + + I  R+V  FK    LK+++ 
Sbjct: 61 VNPQTRKPITIPERKVPKFKPGKALKEKVK 90


>gi|218264602|ref|ZP_03478390.1| hypothetical protein PRABACTJOHN_04096 [Parabacteroides johnsonii
          DSM 18315]
 gi|218221888|gb|EEC94538.1| hypothetical protein PRABACTJOHN_04096 [Parabacteroides johnsonii
          DSM 18315]
          Length = 91

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ + +++++ GLS+ D+ + V      +      G  + +  F +F V +K +R G
Sbjct: 2  MNKTEFINAVAEKSGLSKVDAKKAVEAFVETVSSELKEGGKVALLGFGSFSVAEKAARKG 61

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N +T Q ++I  R+ V FKA + L + I 
Sbjct: 62 VNPKTKQPIEIPARKSVKFKAGAELTEIIK 91


>gi|167036347|ref|YP_001671578.1| histone family protein DNA-binding protein [Pseudomonas putida
          GB-1]
 gi|166862835|gb|ABZ01243.1| histone family protein DNA-binding protein [Pseudomonas putida
          GB-1]
          Length = 101

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L   I+++  L+++ + + +  + + I  +  + + + +  F TF  + +G+R G
Sbjct: 1  MRKPELAAVIAEKADLTKEKANQVLNAILDSITGALDK-DTVTLVGFGTFEKRHRGARTG 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT + VKI     V FK    LK  + 
Sbjct: 60 KNPQTGEPVKIKASNTVAFKPGKNLKDSVN 89


>gi|90416550|ref|ZP_01224481.1| integration host factor beta subunit [marine gamma
          proteobacterium HTCC2207]
 gi|90331749|gb|EAS46977.1| integration host factor beta subunit [marine gamma
          proteobacterium HTCC2207]
          Length = 94

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ IS     L  KD    V  +   +  + V  +  +I  F +F +  +  RV
Sbjct: 1  MTKSELIEKISASQDQLPPKDVELAVRMILERMTHALVTNQRTEIRGFGSFSLHYRAPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T   V +  + V  FK    L+ R+ D +
Sbjct: 61 GRNPKTGDAVDLSGKYVPYFKPGKELRIRVNDSL 94


>gi|322514507|ref|ZP_08067544.1| integration host factor beta subunit [Actinobacillus ureae ATCC
          25976]
 gi|322119577|gb|EFX91655.1| integration host factor beta subunit [Actinobacillus ureae ATCC
          25976]
          Length = 93

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ + +S    L  K     V  L  +I  S  +GE +++  F +F +  +  R+
Sbjct: 1  MTKSELIDNLVSLNPTLQVKSVEDGVKELLEQIMLSLEQGERVEVRGFGSFSLHYRQPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + VK+D + V  FKA   LK+R+
Sbjct: 61 GRNPKTGESVKLDAKYVPHFKAGKDLKERV 90


>gi|315223284|ref|ZP_07865145.1| DNA-binding protein HU [Streptococcus anginosus F0211]
 gi|319938741|ref|ZP_08013105.1| nucleoid DNA-binding protein [Streptococcus anginosus 1_2_62CV]
 gi|315187716|gb|EFU21470.1| DNA-binding protein HU [Streptococcus anginosus F0211]
 gi|315419709|gb|ADU15824.1| histone-like protein [Streptococcus anginosus SK52]
 gi|319811791|gb|EFW08057.1| nucleoid DNA-binding protein [Streptococcus anginosus 1_2_62CV]
          Length = 91

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 47/89 (52%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + +    GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E+ I   +V  FKA   LK  + 
Sbjct: 63 NPQTGAEITIAASKVPAFKAGKALKDAVK 91


>gi|58176578|pdb|1RIY|A Chain A, Hu Mutant V42i From Thermotoga Maritima
          Length = 90

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  ++K+ G  +KD    + T+   I ++  +GE I+I  F +F V++  +R G
Sbjct: 1  MNKKELIDRVAKKAGAKKKDVKLILDTILETITEALAKGEKIQIVGFGSFEVRKAAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N QT + + I  R+V  FK    LK+++ 
Sbjct: 61 VNPQTRKPITIPERKVPKFKPGKALKEKVK 90


>gi|257464686|ref|ZP_05629057.1| integration host factor subunit beta [Actinobacillus minor 202]
 gi|257450346|gb|EEV24389.1| integration host factor subunit beta [Actinobacillus minor 202]
          Length = 93

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ ++ S+   L        V  +  +I  S   GE I+I  F +F +  + +RV
Sbjct: 1  MTKSELIDNLFSQNPSLHLSMVEDGVREILEKIMFSLENGERIEIRGFGSFSLHHRDARV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + VK++ + V  FKA   LK+R+
Sbjct: 61 GRNPKTGESVKLEAKSVPHFKAGKELKERV 90


>gi|325955263|ref|YP_004238923.1| histone family protein DNA-binding protein [Weeksella virosa DSM
          16922]
 gi|323437881|gb|ADX68345.1| histone family protein DNA-binding protein [Weeksella virosa DSM
          16922]
          Length = 92

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+ + G+S++ + + + +    + ++  +GE + +  F TF   ++ +R G
Sbjct: 1  MNKSELIDAIAADAGISKEAAKKALNSFTTNVTNALAKGEKVALVGFGTFSTSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N QT +E++I  + V  FKA S L   +  
Sbjct: 61 INPQTKKEIQIAAKTVAKFKAGSELSAAVDK 91


>gi|85859096|ref|YP_461298.1| integration host factor beta-subunit [Syntrophus aciditrophicus
          SB]
 gi|85722187|gb|ABC77130.1| integration host factor beta-subunit [Syntrophus aciditrophicus
          SB]
          Length = 93

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++++SK+ GL+ K +   +  LF    +   +G  I+I  F +F V+   +  G
Sbjct: 1  MNKSELIEALSKKEGLTEKKAIEVINLLFKGFTEELQKGGRIEIRGFGSFVVRNYNAYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + +K+ P+R+  FK    LK+R+
Sbjct: 61 RNPKTGKNIKVSPKRLPFFKVGKELKERV 89


>gi|299065160|emb|CBJ36324.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Ralstonia
          solanacearum CMR15]
          Length = 92

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++L+ +I+    GL++  + + +      I +S   G+ + +  F TF   ++  R+
Sbjct: 1  MTKTELIDAIASGVDGLTKAKAEQALNVTLQAIMESVGSGDTVSLIGFGTFSQGERAERM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN +T +E+K++  + V FKA    K  + 
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVN 91


>gi|83749477|ref|ZP_00946468.1| DNA-binding protein HU [Ralstonia solanacearum UW551]
 gi|207722088|ref|YP_002252526.1| histone-like dna-binding protein hu-beta (ns1) [Ralstonia
          solanacearum MolK2]
 gi|207744856|ref|YP_002261248.1| histone-like dna-binding protein hu-beta (ns1) [Ralstonia
          solanacearum IPO1609]
 gi|300689790|ref|YP_003750785.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Ralstonia
          solanacearum PSI07]
 gi|300702469|ref|YP_003744069.1| DNA-binding protein hu-beta, ns1 (hu-1), plays a role in DNA
          replication and in rpo translation [Ralstonia
          solanacearum CFBP2957]
 gi|83723874|gb|EAP71061.1| DNA-binding protein HU [Ralstonia solanacearum UW551]
 gi|206587262|emb|CAQ17846.1| histone-like dna-binding protein hu-beta (ns1) [Ralstonia
          solanacearum MolK2]
 gi|206596266|emb|CAQ63193.1| histone-like dna-binding protein hu-beta (ns1) [Ralstonia
          solanacearum IPO1609]
 gi|299070130|emb|CBJ41420.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Ralstonia
          solanacearum CFBP2957]
 gi|299076850|emb|CBJ49462.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Ralstonia
          solanacearum PSI07]
          Length = 92

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++L+ +I+    GL++  + + +      I +S  +G+A+ +  F TF   ++  R+
Sbjct: 1  MTKTELIDAIASGVDGLTKAKAEQALNVTLQAIMESVGKGDAVSLIGFGTFSQGERAERM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN +T +E+K++  + V FKA    K  + 
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVN 91


>gi|239908260|ref|YP_002955001.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
          RS-1]
 gi|239798126|dbj|BAH77115.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
          RS-1]
          Length = 92

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+K++ +++ L  + +  FV   F+ I  +    + ++I  F +F VK+     G
Sbjct: 1  MNKGELIKAVGEKYNLDYEFAVDFVNLFFDSIRQALNNEDRVEIRGFGSFAVKKYNGYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   V+I P+++  FK     K+ + 
Sbjct: 61 RNPKTGVTVEIKPKKLPFFKPGKDFKEYLN 90


>gi|56476801|ref|YP_158390.1| integration host factor beta-subunit (ihf-beta) [Aromatoleum
          aromaticum EbN1]
 gi|56312844|emb|CAI07489.1| integration host factor beta-subunit (ihf-beta) [Aromatoleum
          aromaticum EbN1]
          Length = 104

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  +++ F  L  +D+   V  +   + ++  +G  I+I  F +F    +  RV
Sbjct: 1  MTKSELIDRLAQRFPQLVARDAEEAVKVILGTMTNALTQGGRIEIRGFGSFSSSYRPPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++ + V +  + V  FK+   L++R+
Sbjct: 61 GRNPKSGETVHVSGKYVPHFKSGKELRERV 90


>gi|119475179|ref|ZP_01615532.1| probable DNA-binding protein [marine gamma proteobacterium
          HTCC2143]
 gi|119451382|gb|EAW32615.1| probable DNA-binding protein [marine gamma proteobacterium
          HTCC2143]
          Length = 90

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL   I+ +  +    + + ++ + +EI ++  R E++ +  F TF  + + +R G
Sbjct: 1  MRKSDLATEIADKADIPADKAQQVLSAILDEITNALSRKESVSLIGFGTFEPRHRNARAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT   ++I     V FK    LK+ + 
Sbjct: 61 KNPQTGVALQIAASNTVGFKPGKALKEAVN 90


>gi|283780883|ref|YP_003371638.1| histone family protein DNA-binding protein [Pirellula staleyi DSM
           6068]
 gi|283439336|gb|ADB17778.1| histone family protein DNA-binding protein [Pirellula staleyi DSM
           6068]
          Length = 180

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 54/94 (57%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S  +T+ ++VK+IS+E GL++  +   V   F+ I ++ V    I++ +F  F VK++ +
Sbjct: 54  SPVVTKKEIVKTISEEIGLTQLKTKEIVQKTFDAIVETLVEERRIELRNFGVFEVKERAA 113

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R  RN +T Q V +  + VV FK    +++++  
Sbjct: 114 RKARNPRTGQPVYVAEKFVVTFKPGKEMEEKVRQ 147


>gi|281412322|ref|YP_003346401.1| histone family protein DNA-binding protein [Thermotoga
          naphthophila RKU-10]
 gi|281373425|gb|ADA66987.1| histone family protein DNA-binding protein [Thermotoga
          naphthophila RKU-10]
          Length = 90

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  ++K+ G  +KD    + T+   I ++  +GE ++I  F +F V++  +R G
Sbjct: 1  MNKKELIDRVAKKAGAKKKDVRVILDTILETITEALAKGEKVQIVGFGSFEVRKAAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N QT + + I  R+V  FK    LK+++ 
Sbjct: 61 VNPQTRKPITIPERKVPKFKPGKALKEKVK 90


>gi|329964256|ref|ZP_08301357.1| DNA-binding protein HU-beta [Bacteroides fluxus YIT 12057]
 gi|328525561|gb|EGF52604.1| DNA-binding protein HU-beta [Bacteroides fluxus YIT 12057]
          Length = 88

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 48/85 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ E GLS+ DS + +      +  +   G+ + +  F TF V ++ +R+G
Sbjct: 1  MNKAELISAMAAEAGLSKVDSKKALDAFIVSVTKAMKAGDKVSLVGFGTFSVAERSARMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N  T + ++I  ++VV FK  + L
Sbjct: 61 INPSTKKPIEIAAKKVVKFKPGAEL 85


>gi|86157126|ref|YP_463911.1| histone-like DNA-binding protein [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773637|gb|ABC80474.1| Histone-like DNA-binding protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 116

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 54/109 (49%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +SDL+  +  + G+++K +   + T+F+ + D+  +GE I+I     FHVK      G
Sbjct: 1   MLKSDLINILVVKRGVTQKQAEATIETIFDSMKDALCKGENIEIRGLGAFHVKHYDGYQG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           RN +T + + + P+R ++F+    L+ R+     G            G+
Sbjct: 61  RNPKTGEVIPVKPKRGILFRTGKELRDRVNRPELGGAKPSQSEGEGQGT 109


>gi|323697944|ref|ZP_08109856.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          ND132]
 gi|323457876|gb|EGB13741.1| histone family protein DNA-binding protein [Desulfovibrio
          desulfuricans ND132]
          Length = 91

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K++S++  +   ++T+ V    + + ++ +RG+ ++I  F +F +K      G
Sbjct: 1  MNKSELIKALSEQKKMHVDEATKVVGAFVDSVKEALLRGDRVEIRGFGSFKIKDYEGYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T   V++ P+++  F+    LK+ I  
Sbjct: 61 RNPKTGTVVQVRPKKLPFFRPGKELKEYINQ 91


>gi|323137735|ref|ZP_08072811.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC
           49242]
 gi|322397032|gb|EFX99557.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC
           49242]
          Length = 128

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/104 (41%), Positives = 57/104 (54%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            +T+TR+DL  +I K  GL R DS  +V  +  EI D  V  E +K+SSF  F V+ K  
Sbjct: 22  GRTVTRADLADAIHKRLGLPRADSANYVEMVLEEIFDRIVSREDVKLSSFGAFLVRSKKE 81

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           R+GRN +T    KI  R VV FK S+IL+ RI         + D
Sbjct: 82  RLGRNPKTGAGAKITARLVVTFKPSNILRSRINGGRSVANGHDD 125


>gi|294146438|ref|YP_003559104.1| histone-like DNA-binding protein [Sphingobium japonicum UT26S]
 gi|292676855|dbj|BAI98372.1| histone-like DNA-binding protein [Sphingobium japonicum UT26S]
          Length = 91

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  ++L ++++ + GL++ D+ ++V  +F+ I  +A +GE + ++ F  F VK + +R G
Sbjct: 1  MNNTELAEALAADHGLTKADARKYVDGVFSAIAGAAAKGEEVSLNGFGKFKVKDQPAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T   ++I   + + F  +  +K ++  
Sbjct: 61 RNPSTGAVIQIAASKKLTFTPAKAVKDQLNG 91


>gi|187930619|ref|YP_001901106.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12J]
 gi|241664809|ref|YP_002983169.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12D]
 gi|309780383|ref|ZP_07675134.1| DNA-binding protein HU-beta [Ralstonia sp. 5_7_47FAA]
 gi|187727509|gb|ACD28674.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12J]
 gi|240866836|gb|ACS64497.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12D]
 gi|308921086|gb|EFP66732.1| DNA-binding protein HU-beta [Ralstonia sp. 5_7_47FAA]
          Length = 92

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++L+ +I+    GL++  + + +      I +S  +G+A+ +  F TF   ++  R+
Sbjct: 1  MTKTELIDAIASGVDGLTKAKAEQALNVTLQAIMESVGKGDAVSLIGFGTFSQGERAERM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN +T +E+K++  + V FKA    K  + 
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVN 91


>gi|73543074|ref|YP_297594.1| HU family DNA-binding protein [Ralstonia eutropha JMP134]
 gi|72120487|gb|AAZ62750.1| HU family DNA-binding protein [Ralstonia eutropha JMP134]
          Length = 92

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++L+ +I+    GL++  + + +    + I D+   G+ + +  F TF   ++G R+
Sbjct: 1  MTKTELIDAIAAGVDGLTKAKAEQALNVTLSAIMDAVANGDTLSLVGFGTFSKGERGERM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN +T +E+K++  + V FKA    K  +  
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVNQ 92


>gi|148269794|ref|YP_001244254.1| histone family protein DNA-binding protein [Thermotoga petrophila
          RKU-1]
 gi|147735338|gb|ABQ46678.1| bacterial nucleoid protein Hbs [Thermotoga petrophila RKU-1]
          Length = 90

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  ++K+ G  +KD    + T+   I ++  +GE ++I  F +F V++  +R G
Sbjct: 1  MNKKELIDRVAKKAGAKKKDVRVILDTILETISEALAKGEKVQIVGFGSFEVRKAAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N QT + + I  R+V  FK    LK+++ 
Sbjct: 61 VNPQTRKPITIPERKVPKFKPGKALKEKVK 90


>gi|308272922|emb|CBX29526.1| DNA-binding protein HU-beta [uncultured Desulfobacterium sp.]
          Length = 110

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63
           +T+++LV +I+ +  +++  +   + +    +  +   +   + +  F TF   ++ +R 
Sbjct: 21  MTKAELVDAIAADAKITKTAAVAALDSFTKNVTKALKSKDGKVTLVGFGTFSKAKRAARK 80

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN QT  E+KI  R VV FKA   LK+ +
Sbjct: 81  GRNPQTGAEIKIKARNVVKFKAGKKLKESV 110


>gi|306825075|ref|ZP_07458417.1| DNA-binding protein HU [Streptococcus sp. oral taxon 071 str.
          73H25AP]
 gi|304432511|gb|EFM35485.1| DNA-binding protein HU [Streptococcus sp. oral taxon 071 str.
          73H25AP]
          Length = 91

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 49/89 (55%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + +    GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATDLTKKDSAAAVDAVFAAVTEYLTAGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E++I   +V  FKA   LK  + 
Sbjct: 63 NPQTGKEIEIAASKVPAFKAGKALKDAVK 91


>gi|284928884|ref|YP_003421406.1| nucleoid protein Hbs [cyanobacterium UCYN-A]
 gi|284809343|gb|ADB95048.1| bacterial nucleoid protein Hbs [cyanobacterium UCYN-A]
          Length = 93

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++ +  +++K +   ++     I ++    + + +  F +F  + + +R G
Sbjct: 1  MNKGELIDTVANKADVTKKQADSIISATIETIMEAVAGDDKVTLVGFGSFEARNRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +TN+++ I   +V  F A  + K+++ 
Sbjct: 61 RNPKTNEKMSIPATKVPAFSAGKLFKEKVA 90


>gi|84498266|ref|ZP_00997063.1| DNA-binding protein HU [Janibacter sp. HTCC2649]
 gi|84381766|gb|EAP97649.1| DNA-binding protein HU [Janibacter sp. HTCC2649]
          Length = 92

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 47/92 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R+DL   +  +  LS  D+ R +  +   I D+ V G+ + +  F  F  +++ +R G
Sbjct: 1  MNRTDLKNKVVDKAELSGADADRAIDAVLGAITDALVAGDKVSLPGFGIFETRERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN QT + ++I       FK ++ LK+++   
Sbjct: 61 RNPQTGEALEIKASTAAAFKPAAELKRKLAKS 92


>gi|323144511|ref|ZP_08079112.1| integration host factor subunit alpha [Succinatimonas hippei YIT
          12066]
 gi|322415724|gb|EFY06457.1| integration host factor subunit alpha [Succinatimonas hippei YIT
          12066]
          Length = 94

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 51/93 (54%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +TR+++ + +  ++   +  +  FV   F  I  S  RGE +K++ F  F +K K +R 
Sbjct: 2  ALTRAEITERLVTKYNFPKFRAQSFVDDFFESIAKSLERGEFVKLTGFGNFELKMKTARP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T QEV I PRRV  FKA   L+ RI   
Sbjct: 62 GRNPKTGQEVTIAPRRVTTFKAGQKLRDRISQS 94


>gi|258593296|emb|CBE69635.1| DNA-binding protein HU-beta (NS1) (HU-1) [NC10 bacterium 'Dutch
          sediment']
          Length = 90

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  ++K+  +++K +   + ++   I DS  +G+ + +  F TF V ++ +R G
Sbjct: 1  MTKAELVDKVAKDACITKKAAESALASVTAGIRDSLKKGKKVTLVGFGTFSVARRAARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   +KI   +   F+A   LK  +
Sbjct: 61 RNPQTGDIIKIKAAKTPRFRAGKALKDAV 89


>gi|222148267|ref|YP_002549224.1| HU-like DNA-binding protein alpha subunit [Agrobacterium vitis
          S4]
 gi|221735255|gb|ACM36218.1| HU-like DNA-binding protein alpha subunit [Agrobacterium vitis
          S4]
          Length = 91

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV +++ + GLS+ D+   V  +F+ +      G  I+++ F  F V  + +  G
Sbjct: 1  MNKSELVNAVADKAGLSKADAASAVDAVFDTVQAELKNGGDIRLAGFGAFTVSHREASKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T  EV I  R V  F A   LK  + 
Sbjct: 61 RNPSTGAEVDIPARNVPKFTAGKGLKDAVN 90


>gi|154491895|ref|ZP_02031521.1| hypothetical protein PARMER_01522 [Parabacteroides merdae ATCC
          43184]
 gi|154088136|gb|EDN87181.1| hypothetical protein PARMER_01522 [Parabacteroides merdae ATCC
          43184]
          Length = 90

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ + +++++ GLS+ D+ + V      +      G  + +  F +F V +K +R G
Sbjct: 1  MNKTEFINAVAEKSGLSKVDAKKAVEAFVETVSSELKEGGKVALLGFGSFSVAEKSARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N +T Q ++I  R+ V FKA + L + I 
Sbjct: 61 VNPKTKQPIEIPARKSVKFKAGAELTEIIK 90


>gi|188997447|ref|YP_001931698.1| histone family protein DNA-binding protein [Sulfurihydrogenibium
          sp. YO3AOP1]
 gi|188932514|gb|ACD67144.1| histone family protein DNA-binding protein [Sulfurihydrogenibium
          sp. YO3AOP1]
          Length = 92

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 54/91 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+  ++++ GL + ++ R V      + ++  +GE   I     F+VK++ +R G
Sbjct: 1  MTKSELIAKVAEKAGLKKSEAERAVNVAIEALVEALSKGERTAIPGLGVFNVKERKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T +E+KI  R+VV F A+  LK+ +  
Sbjct: 61 RNPRTGKEIKIPKRKVVAFTAAKSLKEAVNK 91


>gi|91779140|ref|YP_554348.1| DNA-binding protein HU-alpha [Burkholderia xenovorans LB400]
 gi|170693299|ref|ZP_02884459.1| histone family protein DNA-binding protein [Burkholderia graminis
          C4D1M]
 gi|187919389|ref|YP_001888420.1| histone family protein DNA-binding protein [Burkholderia
          phytofirmans PsJN]
 gi|296156548|ref|ZP_06839386.1| histone family protein DNA-binding protein [Burkholderia sp.
          Ch1-1]
 gi|307727373|ref|YP_003910586.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1003]
 gi|323528361|ref|YP_004230513.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1001]
 gi|91691800|gb|ABE34998.1| DNA-binding protein HU-alpha [Burkholderia xenovorans LB400]
 gi|170141829|gb|EDT09997.1| histone family protein DNA-binding protein [Burkholderia graminis
          C4D1M]
 gi|187717827|gb|ACD19050.1| histone family protein DNA-binding protein [Burkholderia
          phytofirmans PsJN]
 gi|295893147|gb|EFG72927.1| histone family protein DNA-binding protein [Burkholderia sp.
          Ch1-1]
 gi|307587898|gb|ADN61295.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1003]
 gi|323385363|gb|ADX57453.1| histone family protein DNA-binding protein [Burkholderia sp.
          CCGE1001]
          Length = 92

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 45/92 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++   G S+  + + +  +   +  + V G+ +++  F +F    + +RVG
Sbjct: 1  MNKQELIDAVAAATGESKAATGQTIDAIVEAVTKAVVGGDTVQLVGFGSFSTGARAARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN  T  E++I   + V F A    K+ +   
Sbjct: 61 RNPSTGAEIQIAAAKTVKFTAGKAFKEAVNAS 92


>gi|256397147|ref|YP_003118711.1| histone family protein DNA-binding protein [Catenulispora
          acidiphila DSM 44928]
 gi|256363373|gb|ACU76870.1| histone family protein DNA-binding protein [Catenulispora
          acidiphila DSM 44928]
          Length = 232

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 45/92 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+++++ +   S+KD+   V  + + I  S   G  + I+ F +F   ++ +R  
Sbjct: 1  MNKAQLIEAVADKLAASKKDAGDAVDAVLDAIIASVASGTKVSITGFGSFEKVKRPARTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T + VK+       FKA    K  +  D
Sbjct: 61 RNPRTGESVKVKASSAPKFKAGQGFKDMVNGD 92


>gi|227824814|ref|ZP_03989646.1| nucleoid DNA-binding protein [Acidaminococcus sp. D21]
 gi|226905313|gb|EEH91231.1| nucleoid DNA-binding protein [Acidaminococcus sp. D21]
          Length = 91

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  ++ +  + +KD+ + V    + + ++  + + +++  F TF  + + +R G
Sbjct: 1  MNKSELISEVASKTAMPKKDAEKAVNAFIDTVKEAIAQKDKVQLIGFGTFEARVRKARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +N +T + +KI    V  FKA    K  +  
Sbjct: 61 KNPRTGETIKIKKATVPAFKAGKAFKDAVNK 91


>gi|94707|pir||S12888 DNA-binding protein II - Thermus aquaticus
 gi|227284|prf||1701290A DNA binding protein II
          Length = 95

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 49/92 (53%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          KT+T++DLV  +++  GL   D    V  L  ++ ++   G  ++++ F TF V+++ +R
Sbjct: 4  KTVTKADLVDQVAQATGLKLLDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           G    T +++KI   +   FK    LK ++ 
Sbjct: 64 TGVKPGTKEKIKIPATQYPAFKPGKALKDKVK 95


>gi|68250247|ref|YP_249359.1| integration host factor subunit beta [Haemophilus influenzae
          86-028NP]
 gi|148825815|ref|YP_001290568.1| integration host factor subunit beta [Haemophilus influenzae
          PittEE]
 gi|81335332|sp|Q4QJU8|IHFB_HAEI8 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|166918548|sp|A5UBN4|IHFB_HAEIE RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|68058446|gb|AAX88699.1| integration host factor beta-subunit [Haemophilus influenzae
          86-028NP]
 gi|148715975|gb|ABQ98185.1| integration host factor beta-subunit [Haemophilus influenzae
          PittEE]
 gi|309972959|gb|ADO96160.1| Integration host factor, beta-subunit [Haemophilus influenzae
          R2846]
          Length = 94

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + +K+  LS K+    V  +   I  S   G+ +++  F +F +  +  R+
Sbjct: 1  MTKSELMEKLSAKQPTLSAKEIENMVKDILEFISQSLENGDRVEVRGFGSFSLHHRQPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  + V  FKA   LK R+
Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARV 90


>gi|322385064|ref|ZP_08058714.1| DNA-binding protein HU [Streptococcus cristatus ATCC 51100]
 gi|321270974|gb|EFX53884.1| DNA-binding protein HU [Streptococcus cristatus ATCC 51100]
          Length = 91

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 49/89 (55%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + +   +GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+ I   +V  FKA   LK  + 
Sbjct: 63 NPQTGKEITIAASKVPAFKAGKALKDAVK 91


>gi|308271747|emb|CBX28355.1| Integration host factor subunit beta [uncultured Desulfobacterium
          sp.]
          Length = 92

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +I  +  +S+ ++ R V   F+ + D+   G+ I+I    +F+VK   S  G
Sbjct: 1  MNKLELISAIKDKANISKAEAARVVQIFFDSMTDAMANGDRIEIRGLCSFYVKNYKSYAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T ++V I P+++  FK+   LK+R+
Sbjct: 61 RNPKTGKKVVIKPKKLPFFKSGKELKERV 89


>gi|218961276|ref|YP_001741051.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Candidatus Cloacamonas acidaminovorans]
 gi|167729933|emb|CAO80845.1| HU, DNA-binding transcriptional regulator, alpha subunit
          [Candidatus Cloacamonas acidaminovorans]
          Length = 93

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 51/92 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          ++R +LVK I+   G S+K ++  +T +   I +S  +GE + +  F +F V  + +R G
Sbjct: 1  MSRDELVKKIAANAGTSQKVASAALTAVLEGITESLKKGEKVSLVGFGSFSVAHRKARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N +T + +KI  R V VFKA   LK+ +   
Sbjct: 61 INPKTKKPLKIPARNVPVFKAGKNLKEAVKKA 92


>gi|94502166|ref|ZP_01308664.1| DNA-binding protein HU [Oceanobacter sp. RED65]
 gi|94425691|gb|EAT10701.1| DNA-binding protein HU [Oceanobacter sp. RED65]
          Length = 76

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 38/76 (50%)

Query: 19 GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPR 78
           + +  + R +    + I ++   G+ + +  F TF VK++ +R GRN QT Q ++I   
Sbjct: 1  DIPKAAAGRALDATVDAITNALKEGDQVVLVGFGTFAVKERAARTGRNPQTGQPIEIAAA 60

Query: 79 RVVVFKASSILKKRIM 94
          +V  FK    LK  + 
Sbjct: 61 KVPGFKPGKALKDAVN 76


>gi|237746993|ref|ZP_04577473.1| integration host factor subunit beta [Oxalobacter formigenes
          HOxBLS]
 gi|229378344|gb|EEO28435.1| integration host factor subunit beta [Oxalobacter formigenes
          HOxBLS]
          Length = 97

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 55/95 (57%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ S++  +  L  KD+   V T+ + + D+   G+ I+I  F +F +  +  R+
Sbjct: 1  MTKSELIVSLANSYPQLLAKDAELTVKTILDAMADALADGQRIEIRGFGSFALSVRPPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN ++ ++V ++ +RV  FK    L++R+    +
Sbjct: 61 GRNPRSGEKVMVEEKRVPHFKPGKELRQRVDTAAK 95


>gi|325274256|ref|ZP_08140370.1| histone family protein DNA-binding protein [Pseudomonas sp.
          TJI-51]
 gi|324100618|gb|EGB98350.1| histone family protein DNA-binding protein [Pseudomonas sp.
          TJI-51]
          Length = 92

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          ++++ LV  ++++ GL++ +++  V T+ + I  + V   +I +  F  F V  + +R G
Sbjct: 1  MSKAVLVGLVAEKHGLTKAEASEIVNTVLSGIQSALVSQGSISLVGFGVFSVVDRAARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T + V +  R+ V F     LK+ + 
Sbjct: 61 RNPNTGEPVTVAARKAVRFTPGEPLKRAVN 90


>gi|307706517|ref|ZP_07643324.1| DNA-binding protein HU [Streptococcus mitis SK321]
 gi|322376730|ref|ZP_08051223.1| DNA-binding protein HU [Streptococcus sp. M334]
 gi|307617972|gb|EFN97132.1| DNA-binding protein HU [Streptococcus mitis SK321]
 gi|321282537|gb|EFX59544.1| DNA-binding protein HU [Streptococcus sp. M334]
          Length = 91

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 48/89 (53%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + D    GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVEAVFAAVADYLAAGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+ I   +V  FKA   LK  + 
Sbjct: 63 NPQTGKEITIAASKVPAFKAGKALKDAVK 91


>gi|296135611|ref|YP_003642853.1| histone family protein DNA-binding protein [Thiomonas intermedia
          K12]
 gi|294339747|emb|CAZ88109.1| DNA-binding protein HU-beta (NS1) (HU-1) [Thiomonas sp. 3As]
 gi|295795733|gb|ADG30523.1| histone family protein DNA-binding protein [Thiomonas intermedia
          K12]
          Length = 90

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ ++    L++  + R +  L + +  +  +G+++ +  F TF V ++ +R G
Sbjct: 1  MNKAELIEHMANNADLNKAQAGRALDALIDAVRRTLKKGDSVSLIGFGTFAVTKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI   ++  F+    LK  I 
Sbjct: 61 RNPRTGAAIKIKAAKIPKFRPGKGLKDAIK 90


>gi|218961994|ref|YP_001741769.1| DNA-binding protein HU (DNA-binding protein II) (TL29)
          [Candidatus Cloacamonas acidaminovorans]
 gi|167730651|emb|CAO81563.1| DNA-binding protein HU (DNA-binding protein II) (TL29)
          [Candidatus Cloacamonas acidaminovorans]
          Length = 95

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/91 (40%), Positives = 53/91 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLVK IS+  G+ RKD    V  L   I DS  +G  I+I  F TF +K +  RVG
Sbjct: 1  MTKADLVKIISENTGIIRKDVAVVVDALLYAIKDSMAKGNHIEIRGFGTFKLKTRKPRVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T+Q+V +  R V  FK S   K  +++
Sbjct: 61 RNPKTDQKVPVPARTVPTFKFSREFKNAVVN 91


>gi|218247718|ref|YP_002373089.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
          8801]
 gi|257060945|ref|YP_003138833.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
          8802]
 gi|218168196|gb|ACK66933.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
          8801]
 gi|256591111|gb|ACV01998.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
          8802]
          Length = 95

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ ++++   + +K +   ++     I ++    + + +  F +F  + + +R G
Sbjct: 1  MNKGELIDAVAERAQVPKKQAEAVISATIETIMEAVSSEDKVTLVGFGSFEARDRKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +TN+++ I   +V  F A    K ++ 
Sbjct: 61 RNPKTNEKMVIPATKVPAFSAGKQFKTKVA 90


>gi|169633383|ref|YP_001707119.1| integration host factor (IHF),beta subunit, site specific
           recombination [Acinetobacter baumannii SDF]
 gi|169796131|ref|YP_001713924.1| integration host factor (IHF),beta subunit, site specific
           recombination [Acinetobacter baumannii AYE]
 gi|184157940|ref|YP_001846279.1| nucleoid DNA-binding protein [Acinetobacter baumannii ACICU]
 gi|213157135|ref|YP_002319180.1| integration host factor, beta subunit [Acinetobacter baumannii
           AB0057]
 gi|215483585|ref|YP_002325806.1| integration host factor, beta subunit [Acinetobacter baumannii
           AB307-0294]
 gi|239502183|ref|ZP_04661493.1| integration host factor, beta subunit [Acinetobacter baumannii
           AB900]
 gi|260555181|ref|ZP_05827402.1| integration host factor, beta subunit [Acinetobacter baumannii ATCC
           19606]
 gi|301345930|ref|ZP_07226671.1| integration host factor, beta subunit [Acinetobacter baumannii
           AB056]
 gi|301510601|ref|ZP_07235838.1| integration host factor, beta subunit [Acinetobacter baumannii
           AB058]
 gi|301597404|ref|ZP_07242412.1| integration host factor, beta subunit [Acinetobacter baumannii
           AB059]
 gi|332851785|ref|ZP_08433710.1| integration host factor, beta subunit [Acinetobacter baumannii
           6013150]
 gi|332865835|ref|ZP_08436619.1| integration host factor, beta subunit [Acinetobacter baumannii
           6013113]
 gi|332872777|ref|ZP_08440743.1| integration host factor, beta subunit [Acinetobacter baumannii
           6014059]
 gi|169149058|emb|CAM86935.1| integration host factor (IHF),beta subunit, site specific
           recombination [Acinetobacter baumannii AYE]
 gi|169152175|emb|CAP01078.1| integration host factor (IHF),beta subunit, site specific
           recombination [Acinetobacter baumannii]
 gi|183209534|gb|ACC56932.1| Bacterial nucleoid DNA-binding protein [Acinetobacter baumannii
           ACICU]
 gi|193077208|gb|ABO12000.2| integration host factor beta subunit [Acinetobacter baumannii ATCC
           17978]
 gi|213056295|gb|ACJ41197.1| integration host factor, beta subunit [Acinetobacter baumannii
           AB0057]
 gi|213986032|gb|ACJ56331.1| integration host factor, beta subunit [Acinetobacter baumannii
           AB307-0294]
 gi|260411723|gb|EEX05020.1| integration host factor, beta subunit [Acinetobacter baumannii ATCC
           19606]
 gi|322508259|gb|ADX03713.1| himD [Acinetobacter baumannii 1656-2]
 gi|323517885|gb|ADX92266.1| nucleoid DNA-binding protein [Acinetobacter baumannii TCDC-AB0715]
 gi|332729792|gb|EGJ61127.1| integration host factor, beta subunit [Acinetobacter baumannii
           6013150]
 gi|332735047|gb|EGJ66132.1| integration host factor, beta subunit [Acinetobacter baumannii
           6013113]
 gi|332739074|gb|EGJ69935.1| integration host factor, beta subunit [Acinetobacter baumannii
           6014059]
          Length = 100

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 1/98 (1%)

Query: 2   SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           ++ + +SDL++ I+ K   L+       V  + +++ ++      I+I  F +F +  + 
Sbjct: 3   TEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSSDNRIEIRGFGSFALHHRE 62

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            RVGRN +T + V +  + V  FK    L+  + +  +
Sbjct: 63  PRVGRNPKTGKSVDVAAKAVPHFKPGKALRDAVNESGK 100


>gi|108759553|ref|YP_633781.1| integration host factor subunit beta [Myxococcus xanthus DK 1622]
 gi|108463433|gb|ABF88618.1| integration host factor, beta subunit [Myxococcus xanthus DK
          1622]
          Length = 117

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+  +  + G+++K +   + T+F  + D+  RGE I+I     FHVK      G
Sbjct: 1  MLKSDLINILVAKRGVTQKQAEATIETIFESMKDALCRGENIEIRGLGAFHVKNYQGYQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T Q + + P+R ++F+    L+ R+ 
Sbjct: 61 RNPKTGQVIPVKPKRGLLFRTGKELRDRVN 90


>gi|308049131|ref|YP_003912697.1| histone family protein DNA-binding protein [Ferrimonas balearica
          DSM 9799]
 gi|307631321|gb|ADN75623.1| histone family protein DNA-binding protein [Ferrimonas balearica
          DSM 9799]
          Length = 93

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R  L+K +++   +S+ +  R +  L N I  +   GE + +     F V+    R G
Sbjct: 1  MNRQQLIKRMAELSEMSQAECKRVLAALENTIAQALHEGETVYLPPLGVFEVRHHLPRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + ++I  R V  FKA++ LKK + +
Sbjct: 61 RNPQTGETIEIPLRTVPAFKAAAPLKKAVAE 91


>gi|304415503|ref|ZP_07396140.1| integration host factor (IHF) DNA-binding protein beta subunit
          [Candidatus Regiella insecticola LSR1]
 gi|304282642|gb|EFL91168.1| integration host factor (IHF) DNA-binding protein beta subunit
          [Candidatus Regiella insecticola LSR1]
          Length = 100

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L+K + K    +S KD    V  +F  +  +  +G  I+I  F +F +  + +R 
Sbjct: 1  MNKSELIKRLHKRLSHMSFKDVDESVGEIFRFMIATLAKGNRIEIRGFGSFCLHYRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +T + V++  + V  FK    L+  +    R
Sbjct: 61 GRNPKTGEPVELPSKYVAHFKPGKDLRAGVDSAAR 95


>gi|302035809|ref|YP_003796131.1| integration host factor subunit beta [Candidatus Nitrospira
          defluvii]
 gi|300603873|emb|CBK40205.1| Integration host factor, beta subunit [Candidatus Nitrospira
          defluvii]
          Length = 92

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T++ +++ +S++   L+++ +   V T+F+ I DS   G   +I  F +F ++ +  + 
Sbjct: 1  MTKAQIIERVSEQVTTLTKRQAEIVVNTIFDCIRDSLRNGNKTEIRGFGSFRLRARRMKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T   V +  +RV  FKA   LK+ +  
Sbjct: 61 GRNPKTGATVAVPAKRVPFFKAGKELKELLNK 92


>gi|257091641|ref|YP_003165284.1| hypothetical protein CAP2UW1_4713 [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
 gi|257048650|gb|ACV37837.1| hypothetical protein CAP2UW1_4713 [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
          Length = 103

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 53/95 (55%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRSDL+  ++  F  L  KD+   V  + + I  +  +G+ ++I  F +F +  + +R 
Sbjct: 1  MTRSDLITVLASRFPSLVAKDAEIAVKEILDAIGIALAQGDRVEIRGFGSFRLNYRPART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN ++ + V +  + V  F+AS  +++R+   ++
Sbjct: 61 GRNPKSGEPVAVAEKYVPHFQASKEMRERVEQSVK 95


>gi|289163419|ref|YP_003453557.1| integration host factor, beta subunit [Legionella longbeachae
           NSW150]
 gi|288856592|emb|CBJ10397.1| putative integration host factor, beta subunit [Legionella
           longbeachae NSW150]
          Length = 102

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 46/102 (45%), Gaps = 1/102 (0%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+L++ I+     L+ K     V  +   + D+ ++ + I+I  F +F +  +  R 
Sbjct: 1   MIKSELIEHIASRMTHLTEKQVADGVNRILELMSDALIKNQRIEIRGFGSFSLHYRPPRN 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
             N +T ++V    +    FK    L++R+       +  ++
Sbjct: 61  AHNPKTGEKVVTTAKYSPHFKPGKELRERVDASRDKYELPEE 102


>gi|329118112|ref|ZP_08246824.1| integration host factor subunit alpha [Neisseria bacilliformis
          ATCC BAA-1200]
 gi|327465772|gb|EGF12045.1| integration host factor subunit alpha [Neisseria bacilliformis
          ATCC BAA-1200]
          Length = 95

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          LV  +SK   +S+ D+   V   F EI  +  RGE IKIS F  F ++ K  R GRN +T
Sbjct: 5  LVDKVSK---VSKNDAKEIVELFFEEIRTTLARGEEIKISGFGNFQLRDKPQRPGRNPKT 61

Query: 70 NQEVKIDPRRVVVFKASSILKKRIM 94
           +EV I  RRVV F AS  LK  + 
Sbjct: 62 GEEVPITARRVVTFHASQKLKGMVE 86


>gi|315419707|gb|ADU15823.1| histone-like protein [Streptococcus parasanguinis]
          Length = 91

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 50/89 (56%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + +   +GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E++I   +V  FKA   LK  + 
Sbjct: 63 NPQTGKEIEIAASKVPAFKAGKALKDAVK 91


>gi|118475521|ref|YP_892021.1| DNA-binding protein HU [Campylobacter fetus subsp. fetus 82-40]
 gi|118414747|gb|ABK83167.1| DNA-binding protein HU [Campylobacter fetus subsp. fetus 82-40]
          Length = 104

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 48/95 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++ V  ++ + GL++KD+   +      I +   +G+++    F TF V ++ +R  
Sbjct: 1  MTKAEFVGLVASKAGLTKKDTELALDGFLGSISEVLTKGDSVTFVGFGTFGVTERAARTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          +   T +E+K+  ++ V FK    LK  +     G
Sbjct: 61 KVPSTGKEIKVPAKKAVKFKVGKNLKDAVASAGCG 95


>gi|329889489|ref|ZP_08267832.1| integration host factor subunit alpha [Brevundimonas diminuta
          ATCC 11568]
 gi|328844790|gb|EGF94354.1| integration host factor subunit alpha [Brevundimonas diminuta
          ATCC 11568]
          Length = 91

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 57/86 (66%)

Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQ 71
          +++ +E GLSR++ +  V    + I DS  +GE +K+S F  F V++K +R+GRN +T +
Sbjct: 3  EAVHEEVGLSRQECSGLVERTLDLIVDSLEQGETVKLSGFGVFQVREKRARMGRNPKTGE 62

Query: 72 EVKIDPRRVVVFKASSILKKRIMDDM 97
             I+PRRV+ F+AS I+K R+ D +
Sbjct: 63 PAAINPRRVISFRASQIMKSRVHDAV 88


>gi|332702002|ref|ZP_08422090.1| histone family protein DNA-binding protein [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552151|gb|EGJ49195.1| histone family protein DNA-binding protein [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 120

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 55/96 (57%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           ++KT+T++++V  I ++  L+R +    V TL + +  S  R  ++ IS F  F    K 
Sbjct: 21  LNKTLTKAEIVDYIYEKTDLNRAEIKAHVETLLDIMKQSIKRDHSLLISGFGKFEAYDKR 80

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           +R GRN QTN+ + + PR+VVVF+ S   +  +  +
Sbjct: 81  ARKGRNPQTNETITLPPRKVVVFRLSRKFRGELNGE 116


>gi|327250473|gb|EGE62183.1| DNA-binding protein HU-alpha [Escherichia coli STEC_7v]
          Length = 90

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 41/82 (50%)

Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQE 72
           I+++  LS+  +   + +    I +S   G+A+++  F TF V  +  R GRN QT +E
Sbjct: 9  QIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKE 68

Query: 73 VKIDPRRVVVFKASSILKKRIM 94
          +KI    V  F +   LK  + 
Sbjct: 69 IKIAAANVPAFVSGKALKDAVK 90


>gi|296121526|ref|YP_003629304.1| histone family protein DNA-binding protein [Planctomyces
          limnophilus DSM 3776]
 gi|296013866|gb|ADG67105.1| histone family protein DNA-binding protein [Planctomyces
          limnophilus DSM 3776]
          Length = 171

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ ++VK+IS E GL++  +   V   F+ I ++ V    I++ +F  F VK++ +R  
Sbjct: 1  MTKKEIVKAISDEIGLTQLKTKEIVQKTFDAIVETLVADGRIELRNFGVFEVKKRAARKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T  +V +  + VV FK    +++++  
Sbjct: 61 RNPRTGDKVFVPEKFVVTFKPGKEMEEKVRQ 91


>gi|262340839|ref|YP_003283694.1| DNA-binding protein HU-beta [Blattabacterium sp. (Blattella
          germanica) str. Bge]
 gi|262272176|gb|ACY40084.1| DNA-binding protein HU-beta [Blattabacterium sp. (Blattella
          germanica) str. Bge]
          Length = 88

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 46/85 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV SI+++ G+++  +          + +S  +G+ + +  F TF V ++  R G
Sbjct: 1  MNKTELVNSIAEKTGITKIKAKNVTDAFIETVIESLKKGDKVTLVGFGTFSVVERHPRNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N +T +++ I  ++V  FK  + L
Sbjct: 61 VNPRTGKKIHIPGKKVAKFKIGAEL 85


>gi|226227080|ref|YP_002761186.1| DNA-binding protein [Gemmatimonas aurantiaca T-27]
 gi|226090271|dbj|BAH38716.1| DNA-binding protein [Gemmatimonas aurantiaca T-27]
          Length = 110

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 6/97 (6%)

Query: 5  ITRSDLVK----SISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          +T++DLV+     I++  G  +S+KD  R V    + I ++    + I++  F TF ++Q
Sbjct: 1  MTKADLVENVTARIAQTAGPTISKKDCARVVDAFLDAIKEALQEQKNIEVRGFGTFKIRQ 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          + +R+ RN +T   V++  R V VFK S  L+  +  
Sbjct: 61 RKTRMARNPRTGSPVEVSARPVPVFKPSKELRAMVAG 97


>gi|218280828|ref|ZP_03487461.1| hypothetical protein EUBIFOR_00019 [Eubacterium biforme DSM 3989]
 gi|218217859|gb|EEC91397.1| hypothetical protein EUBIFOR_00019 [Eubacterium biforme DSM 3989]
          Length = 94

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 53/94 (56%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS  I + DL + +++EFG S+KD+T +V  +F+ + D+      + +  F  F + ++ 
Sbjct: 1  MSNVINKKDLAEKLAEEFGCSKKDATAYVQFVFDTVADTLKDNGTVDVFGFGKFSISERA 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +R G N  T ++++I   + V FKAS  LK  + 
Sbjct: 61 ARTGINPATKEKIEIAASKSVKFKASKALKDAVK 94


>gi|295112033|emb|CBL28783.1| bacterial nucleoid protein Hbs [Synergistetes bacterium SGP1]
          Length = 100

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 58/101 (57%), Gaps = 2/101 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+++L+ +I+++  L +KD    V  +F  I  +  RGE      F  F VK++ +R G
Sbjct: 1   MTKAELIDAIAEKLLLKKKDVVPVVEEVFASIEGALSRGEKCTFVGFGVFEVKERAAREG 60

Query: 65  RNLQ-TNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           RN Q   + VKI  ++V VF+    LK++++  ++G+K  K
Sbjct: 61  RNPQDPTKVVKIPAKKVPVFRPGKDLKEKVL-AIKGKKKAK 100


>gi|283852806|ref|ZP_06370069.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          FW1012B]
 gi|283571798|gb|EFC19795.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          FW1012B]
          Length = 91

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + ++D++  I    G+ ++ ++ + +  +   I DS V GEA+ ++ F TF V ++ +R 
Sbjct: 1  MAKTDIIAKIQANAGIATKAEAGKVLDAVLGAIQDSLVSGEALTLTGFGTFKVSERAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GR+ +T   + I   + V F     LK  + 
Sbjct: 61 GRDPRTGNAIDIPASKAVRFTPGKTLKDAVK 91


>gi|149376912|ref|ZP_01894667.1| Bacterial nucleoid DNA-binding protein [Marinobacter algicola
          DG893]
 gi|149358804|gb|EDM47273.1| Bacterial nucleoid DNA-binding protein [Marinobacter algicola
          DG893]
          Length = 90

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L  +++ + GLSR  ++  +T   ++I  +A RGE   +  F TF+++ + +R G
Sbjct: 1  MRKPELAAAVADKTGLSRDKASEVITAFTDQISAAAARGEDTTLIGFGTFNIRSREARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT   +KI   + V FKA   LK  I
Sbjct: 61 RNPQTGATIKIPASKTVGFKAGKALKDSI 89


>gi|158340410|ref|YP_001521766.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
 gi|158310651|gb|ABW32265.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
          Length = 91

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV  I+   G+++K +   +T L   I ++   G+   +  F +F  + + +R G
Sbjct: 1  MNKGELVDEIADNAGVTKKQADTILTALTETIMETVSSGDKDSLVGFGSFEARDRKARDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T +++KI   +  VF A  + K+++  
Sbjct: 61 RNPRTGKKLKIPATKAPVFSAGKVFKEKVKG 91


>gi|148259931|ref|YP_001234058.1| histone family protein DNA-binding protein [Acidiphilium cryptum
          JF-5]
 gi|326403115|ref|YP_004283196.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301]
 gi|146401612|gb|ABQ30139.1| histone family protein DNA-binding protein [Acidiphilium cryptum
          JF-5]
 gi|325049976|dbj|BAJ80314.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301]
          Length = 87

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 45/86 (52%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          DLV  ++++  LS+  +T  V  +F  I ++  R E +++  F TF   ++ +  GRN +
Sbjct: 2  DLVADVAEKTDLSKAKATEVVDAVFAAIEEALKRKEEVRLVGFGTFGTAERKAATGRNPR 61

Query: 69 TNQEVKIDPRRVVVFKASSILKKRIM 94
          T +E++I     V FK    LK  + 
Sbjct: 62 TGEEIQIAASTSVRFKPGKSLKDAVN 87


>gi|270158045|ref|ZP_06186702.1| integration host factor alpha subunit [Legionella longbeachae
          D-4968]
 gi|289163687|ref|YP_003453825.1| integration host factor, alpha subunit [Legionella longbeachae
          NSW150]
 gi|269990070|gb|EEZ96324.1| integration host factor alpha subunit [Legionella longbeachae
          D-4968]
 gi|288856860|emb|CBJ10671.1| putative integration host factor, alpha subunit [Legionella
          longbeachae NSW150]
          Length = 97

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            ++++ + +++  E  LS+  S   V   F E+  +   G  +K+S F  F ++ K  R
Sbjct: 2  NALSKAIMAETLCDELNLSKPASKEMVENFFEELRHALEHGHHVKLSGFGNFTLRDKPQR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN +T +E+ +  RRVV FK    LK +I 
Sbjct: 62 PGRNPKTGEEIPVVARRVVTFKPGLKLKSKIE 93


>gi|261749642|ref|YP_003257328.1| histone-like DNA-binding protein HU-beta [Blattabacterium sp.
          (Periplaneta americana) str. BPLAN]
 gi|261497735|gb|ACX84185.1| histone-like DNA-binding protein HU-beta [Blattabacterium sp.
          (Periplaneta americana) str. BPLAN]
          Length = 88

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 45/85 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV SI+++ G+++  +          + +S  +G  + +  F TF V ++  R G
Sbjct: 1  MNKTELVNSIAEKTGITKIKAKNVTDAFIETVIESLKKGNKVTLVGFGTFSVVERNPRNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N +T +++ I  ++V  FK  + L
Sbjct: 61 INPRTGKKIHIPGKKVAKFKIGAEL 85


>gi|194291213|ref|YP_002007120.1| DNA-binding protein hu-beta, ns1 (hu-1), plays a role in DNA
          replication and in rpo translation [Cupriavidus
          taiwanensis LMG 19424]
 gi|193225048|emb|CAQ71059.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Cupriavidus
          taiwanensis LMG 19424]
          Length = 92

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++L+ +I+    GL++  + + +    + I D+  +G+ + +  F TF   ++G R+
Sbjct: 1  MTKTELIDAIAAGVDGLTKAKAEQALNVTLSAIMDAVAKGDTLSLIGFGTFSKGERGERM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN +T +E+K++  + V FKA    K  +  
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVNQ 92


>gi|188584610|ref|YP_001928095.1| integration host factor, beta subunit [Methylobacterium populi
          BJ001]
 gi|179348472|gb|ACB83519.1| integration host factor, beta subunit [Methylobacterium populi
          BJ001]
          Length = 94

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L+  + ++   L  +D    V T+   I  +  RG+ +++  F  F VK + +R 
Sbjct: 1  MIKSELILRLVEQNPHLYARDVEAVVNTILETITAAMERGDRVELRGFGAFSVKHREARQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN ++   V ++ +   VF+    L+ ++ D+ 
Sbjct: 61 GRNPRSGAAVAVEAKTAPVFRPGKELRLKLQDET 94


>gi|293608242|ref|ZP_06690545.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828815|gb|EFF87177.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325122026|gb|ADY81549.1| integration host factor (IHF),beta subunit, site specific
           recombination [Acinetobacter calcoaceticus PHEA-2]
          Length = 100

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 49/98 (50%), Gaps = 1/98 (1%)

Query: 2   SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           ++ + +SDL++ I+ K   L+       V  + +++ ++      I+I  F +F +  + 
Sbjct: 3   TEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSTDNRIEIRGFGSFALHHRD 62

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            RVGRN +T + V++  + V  FK    L+  + +  +
Sbjct: 63  PRVGRNPKTGKSVEVAAKAVPHFKPGKALRDAVNESGK 100


>gi|323144308|ref|ZP_08078923.1| integration host factor subunit beta [Succinatimonas hippei YIT
          12066]
 gi|322415899|gb|EFY06618.1| integration host factor subunit beta [Succinatimonas hippei YIT
          12066]
          Length = 92

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TR+DL+ S I++   +      + V  +F ++ ++  +GE I+I  F +F V+ +  R+
Sbjct: 1  MTRADLINSLIARYRDIPPSQIDKSVREIFEQMIETLSQGERIEIRGFGSFEVRLREPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            N +T + V +  R+VV FK    L+ R+ 
Sbjct: 61 AHNPKTGERVDLPARKVVHFKPGVELRNRVN 91


>gi|71907345|ref|YP_284932.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB]
 gi|71846966|gb|AAZ46462.1| Histone-like bacterial DNA-binding protein [Dechloromonas
          aromatica RCB]
          Length = 90

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 46/88 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ SI+ +  +S+  + R +      I  +   G+++ +  F TF+V ++ +R G
Sbjct: 1  MNKTDLIDSIAAQADISKAAAGRALDAAVESIKGALKAGDSVSLIGFGTFYVGERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN +T + ++I   +   F+    LK  
Sbjct: 61 RNPRTGKTLEIKAAKQPKFRPGKGLKDA 88


>gi|194336405|ref|YP_002018199.1| histone family protein DNA-binding protein [Pelodictyon
          phaeoclathratiforme BU-1]
 gi|194308882|gb|ACF43582.1| histone family protein DNA-binding protein [Pelodictyon
          phaeoclathratiforme BU-1]
          Length = 91

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 45/86 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          ++++ LV+ I+ +  LS+ D+ R +      + DS   G  + ++ F TF +  +  R G
Sbjct: 1  MSKNALVEKIADQAQLSKIDADRALKAFVTIVSDSLKNGVDVPLAGFGTFTIVDRAEREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN  T + + I  ++VV FK    LK
Sbjct: 61 RNPMTGEAITIAAKKVVKFKPGKALK 86


>gi|153003612|ref|YP_001377937.1| histone family protein DNA-binding protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027185|gb|ABS24953.1| histone family protein DNA-binding protein [Anaeromyxobacter sp.
           Fw109-5]
          Length = 126

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 54/103 (52%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +SDL+  +  + G+++K +   + T+F+ + D+  RGE I+I     FHVK      G
Sbjct: 1   MLKSDLINILVVKRGVTQKQAESTIETIFDSMKDALCRGENIEIRGLGAFHVKHYDGYQG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           RN +T + + + P+R ++F+    L+ R+       K  + D 
Sbjct: 61  RNPKTGEVIPVKPKRGILFRTGKELRDRVNRPEALAKPLEPDT 103


>gi|159900715|ref|YP_001546962.1| histone family protein DNA-binding protein [Herpetosiphon
          aurantiacus ATCC 23779]
 gi|159893754|gb|ABX06834.1| histone family protein DNA-binding protein [Herpetosiphon
          aurantiacus ATCC 23779]
          Length = 95

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 50/94 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + + +  +++  G+S+K++ R V  + + + +    GE + ++ F TF V+++ +R G
Sbjct: 1  MQKIEFIAEVAERTGISKKEARRVVDAMLDVVSERLQAGEKVVLTGFGTFEVRERQARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           N +T + + I+  +   F AS+ LK  +     
Sbjct: 61 VNPKTRERMTIEATKTPGFSASNSLKLLVRQGKP 94


>gi|296238979|gb|ADH01502.1| histone family protein DNA-binding protein [Pseudomonas sp. 2663]
          Length = 92

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 41/90 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++   G S+  ++  +  L   I  +    + +++  F  F   Q+ +R+G
Sbjct: 1  MNKQELIDAVAASTGASKTATSEVIQALLEVITHAVSADDTVQLIGFGAFSQGQRAARIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T  E+ I   + V F A    K  + 
Sbjct: 61 RNPTTGAEIAIAAAKTVKFIAGKAFKDAVN 90


>gi|260903510|ref|ZP_05911905.1| integration host factor, beta subunit [Vibrio parahaemolyticus
          AQ4037]
 gi|308107614|gb|EFO45154.1| integration host factor, beta subunit [Vibrio parahaemolyticus
          AQ4037]
          Length = 82

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 42/80 (52%)

Query: 15 SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVK 74
          +++  LS K+    V  +   +  +   G+ I+I  F +F +  +  RVGRN +T  +V+
Sbjct: 1  AEQTHLSAKEVEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRVGRNPKTGDKVE 60

Query: 75 IDPRRVVVFKASSILKKRIM 94
          ++ + V  FK    L++R+ 
Sbjct: 61 LEGKYVPHFKPGKELRERVN 80


>gi|219128513|ref|XP_002184456.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404257|gb|EEC44205.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 90

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 46/89 (51%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          ++D V +++++ G ++K+S   +  + + +      G+ + +  F +F +K + +R GRN
Sbjct: 1  KADFVTALAEQTGQTKKESEGTLQAVLDILQAQVSEGKKVTLPGFGSFVLKSRAARKGRN 60

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           QT +E++I   +   F  S   K  +  
Sbjct: 61 PQTGEEMQIAASKSPGFTPSKAWKDMVNG 89


>gi|289167992|ref|YP_003446261.1| histone-like protein [Streptococcus mitis B6]
 gi|288907559|emb|CBJ22396.1| histone-like protein [Streptococcus mitis B6]
          Length = 91

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 49/89 (55%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + +    GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVEAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+KI   +V  FKA   LK  + 
Sbjct: 63 NPQTGKEIKIAASKVPAFKAGKALKDAVK 91


>gi|270292588|ref|ZP_06198799.1| DNA-binding protein HU [Streptococcus sp. M143]
 gi|293365596|ref|ZP_06612305.1| DNA-binding protein HU [Streptococcus oralis ATCC 35037]
 gi|306829650|ref|ZP_07462840.1| DNA-binding protein HU [Streptococcus mitis ATCC 6249]
 gi|307703547|ref|ZP_07640489.1| putative DNA-binding protein HU [Streptococcus oralis ATCC 35037]
 gi|315613311|ref|ZP_07888220.1| DNA-binding protein HU [Streptococcus sanguinis ATCC 49296]
 gi|322375383|ref|ZP_08049896.1| DNA-binding protein HU [Streptococcus sp. C300]
 gi|331266215|ref|YP_004325845.1| histone-like protein [Streptococcus oralis Uo5]
 gi|270278567|gb|EFA24413.1| DNA-binding protein HU [Streptococcus sp. M143]
 gi|291315964|gb|EFE56408.1| DNA-binding protein HU [Streptococcus oralis ATCC 35037]
 gi|304428736|gb|EFM31826.1| DNA-binding protein HU [Streptococcus mitis ATCC 6249]
 gi|307622954|gb|EFO01949.1| putative DNA-binding protein HU [Streptococcus oralis ATCC 35037]
 gi|315314546|gb|EFU62589.1| DNA-binding protein HU [Streptococcus sanguinis ATCC 49296]
 gi|315419705|gb|ADU15822.1| histone-like protein [Streptococcus oralis]
 gi|321279646|gb|EFX56686.1| DNA-binding protein HU [Streptococcus sp. C300]
 gi|326682887|emb|CBZ00504.1| histone-like protein [Streptococcus oralis Uo5]
          Length = 91

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 49/89 (55%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + +    GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+KI   +V  FKA   LK  + 
Sbjct: 63 NPQTGKEIKIAASKVPAFKAGKALKDAVK 91


>gi|296876928|ref|ZP_06900973.1| DNA-binding protein HU [Streptococcus parasanguinis ATCC 15912]
 gi|296432059|gb|EFH17861.1| DNA-binding protein HU [Streptococcus parasanguinis ATCC 15912]
          Length = 91

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 51/89 (57%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + +   +GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E++I   +V  FKA   LK+ + 
Sbjct: 63 NPQTGKEIEIAASKVPAFKAGKALKEAVK 91


>gi|78224250|ref|YP_385997.1| histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
 gi|78195505|gb|ABB33272.1| Histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
          Length = 97

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 49/93 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DL   I +     +K++   V  +   + D+      +KIS F  F V+QK  R G
Sbjct: 1  MTKADLADKIQERISCQKKEAVELVELVMESLKDAIATEGLVKISGFGNFVVRQKTDRAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          RN QT + + I  R+V+ FK S ILK RI   +
Sbjct: 61 RNPQTGETITISSRKVLTFKPSVILKNRINSSL 93


>gi|325679104|ref|ZP_08158698.1| DNA-binding protein HU-beta [Ruminococcus albus 8]
 gi|324109228|gb|EGC03450.1| DNA-binding protein HU-beta [Ruminococcus albus 8]
          Length = 92

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+++ G ++K++   +  + + I ++  +G+ + I  F TF V+ + ++  
Sbjct: 1  MKKAELLAAIAEKNGSTKKNAEAALDAVISTITEALEKGDKVAIPGFGTFEVRDRAAKKS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N  T + + +  ++V  FKA+  LK  +  
Sbjct: 61 INPATKEPIDVPAKKVPAFKAAKALKDAVDK 91


>gi|125717537|ref|YP_001034670.1| DNA-binding protein HU [Streptococcus sanguinis SK36]
 gi|323352711|ref|ZP_08087681.1| DNA-binding protein HU [Streptococcus sanguinis VMC66]
 gi|125497454|gb|ABN44120.1| DNA-binding protein HU, putative [Streptococcus sanguinis SK36]
 gi|322121747|gb|EFX93493.1| DNA-binding protein HU [Streptococcus sanguinis VMC66]
 gi|324990641|gb|EGC22577.1| DNA-binding protein HU [Streptococcus sanguinis SK353]
 gi|324993379|gb|EGC25299.1| DNA-binding protein HU [Streptococcus sanguinis SK405]
 gi|324995308|gb|EGC27220.1| DNA-binding protein HU [Streptococcus sanguinis SK678]
 gi|325688248|gb|EGD30267.1| DNA-binding protein HU [Streptococcus sanguinis SK72]
 gi|325690171|gb|EGD32175.1| DNA-binding protein HU [Streptococcus sanguinis SK115]
 gi|325694095|gb|EGD36013.1| DNA-binding protein HU [Streptococcus sanguinis SK150]
 gi|325697097|gb|EGD38984.1| DNA-binding protein HU [Streptococcus sanguinis SK160]
 gi|327458737|gb|EGF05085.1| DNA-binding protein HU [Streptococcus sanguinis SK1057]
 gi|327461654|gb|EGF07985.1| DNA-binding protein HU [Streptococcus sanguinis SK1]
 gi|327468999|gb|EGF14471.1| DNA-binding protein HU [Streptococcus sanguinis SK330]
 gi|327473374|gb|EGF18794.1| DNA-binding protein HU [Streptococcus sanguinis SK408]
 gi|327489507|gb|EGF21300.1| DNA-binding protein HU [Streptococcus sanguinis SK1058]
 gi|328945552|gb|EGG39703.1| DNA-binding protein HU [Streptococcus sanguinis SK1087]
 gi|332361741|gb|EGJ39545.1| DNA-binding protein HU [Streptococcus sanguinis SK1056]
 gi|332362906|gb|EGJ40699.1| DNA-binding protein HU [Streptococcus sanguinis SK49]
 gi|332363445|gb|EGJ41228.1| DNA-binding protein HU [Streptococcus sanguinis SK355]
 gi|332366058|gb|EGJ43814.1| DNA-binding protein HU [Streptococcus sanguinis SK1059]
          Length = 91

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + +   +GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+KI   +V  FKA   LK  + 
Sbjct: 63 NPQTGKEIKIAASKVPAFKAGKALKDAVK 91


>gi|330994052|ref|ZP_08317982.1| DNA-binding protein HRL53 [Gluconacetobacter sp. SXCC-1]
 gi|329758998|gb|EGG75512.1| DNA-binding protein HRL53 [Gluconacetobacter sp. SXCC-1]
          Length = 95

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 45/95 (47%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M K + + +LV ++++E  L++  +   V  +F  I  +    + +++  F TF    + 
Sbjct: 1  MEKPLNKQELVAAVAEEADLAKAKAGEVVDAVFGAIEKALASKQEVRLVGFGTFVTATRK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +  GRN +T + + I     V FK    LK+ +  
Sbjct: 61 AAKGRNPRTGEPLDIPASTSVRFKPGKNLKEAVSK 95


>gi|302344529|ref|YP_003809058.1| histone family protein DNA-binding protein [Desulfarculus baarsii
          DSM 2075]
 gi|301641142|gb|ADK86464.1| histone family protein DNA-binding protein [Desulfarculus baarsii
          DSM 2075]
          Length = 93

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 49/91 (53%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++D++  +     L++ ++   +      I ++   G+ + +S F  + V+ K  R 
Sbjct: 2  TLTKADIIARVYANGQLTKAEAADSIEESLRLIKEALGSGDEVLVSGFGKWSVRDKNQRR 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN QT   + + PRRVV F+ S +LK +I 
Sbjct: 62 GRNPQTGDPLTLPPRRVVTFRPSRVLKAKIQ 92


>gi|239905786|ref|YP_002952525.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
          RS-1]
 gi|239795650|dbj|BAH74639.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
          RS-1]
          Length = 91

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + ++D++  I    G+ ++ ++ + +  +   I +S V GEA+ ++ F TF V ++ +R 
Sbjct: 1  MAKTDIIAKIQANAGIATKAEAGKVLDAVLGAIQESLVGGEALTLTGFGTFKVSERAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GR+ +T   + I   + V F     LK  + 
Sbjct: 61 GRDPRTGNPIDIPASKAVRFTPGKTLKDAVK 91


>gi|242278247|ref|YP_002990376.1| histone family protein DNA-binding protein [Desulfovibrio
          salexigens DSM 2638]
 gi|242121141|gb|ACS78837.1| histone family protein DNA-binding protein [Desulfovibrio
          salexigens DSM 2638]
          Length = 90

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          ++++ LVK I ++  LS KD++  +  + + I D       + ++ F TF   ++ +R G
Sbjct: 1  MSKTVLVKKIREKLELSAKDASAALDGVLSAIEDGLKEEGNVTLTGFGTFKTVERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++I   R V F     LK  + 
Sbjct: 61 RNPQTGEAIQIPASRGVKFTPGKFLKDAVK 90


>gi|58979367|gb|AAW83348.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979385|gb|AAW83357.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979387|gb|AAW83358.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979389|gb|AAW83359.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979391|gb|AAW83360.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979397|gb|AAW83363.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979421|gb|AAW83375.1| DNA-binding protein HU [Campylobacter jejuni]
          Length = 98

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+T     + + I D   +G++I    F TF  +++ +R  
Sbjct: 1  MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R   T + +K+   RV  FK    LK+ +
Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNLKEAV 89


>gi|270158339|ref|ZP_06186996.1| integration host factor, beta subunit [Legionella longbeachae
           D-4968]
 gi|269990364|gb|EEZ96618.1| integration host factor, beta subunit [Legionella longbeachae
           D-4968]
          Length = 109

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 46/102 (45%), Gaps = 1/102 (0%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+L++ I+     L+ K     V  +   + D+ ++ + I+I  F +F +  +  R 
Sbjct: 8   MIKSELIEHIASRMTHLTEKQVADGVNRILELMSDALIKNQRIEIRGFGSFSLHYRPPRN 67

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
             N +T ++V    +    FK    L++R+       +  ++
Sbjct: 68  AHNPKTGEKVVTTAKYSPHFKPGKELRERVDASRDKYELPEE 109


>gi|269218721|ref|ZP_06162575.1| DNA-binding protein HU [Actinomyces sp. oral taxon 848 str.
          F0332]
 gi|269211832|gb|EEZ78172.1| DNA-binding protein HU [Actinomyces sp. oral taxon 848 str.
          F0332]
          Length = 95

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 54/95 (56%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M  +I R++L+  I+++  LS+ D+ + V  L + + DS  +GEA+KI+        ++ 
Sbjct: 1  MGMSINRTELIAKIAEKANLSKTDADKAVAALQDVLVDSLSKGEAVKITGLLAVERTERA 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +R GRN +T +E++I     V   A S LKK + +
Sbjct: 61 ARKGRNPRTGEEIQIPAGYGVKLTAGSALKKAVTE 95


>gi|262375355|ref|ZP_06068588.1| integration host factor, beta subunit [Acinetobacter lwoffii SH145]
 gi|262309609|gb|EEY90739.1| integration host factor, beta subunit [Acinetobacter lwoffii SH145]
          Length = 101

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 49/98 (50%), Gaps = 1/98 (1%)

Query: 2   SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           ++ + +SDL++ I+ K   L+       V  + +++ ++      I+I  F +F +  + 
Sbjct: 3   TEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSTDNRIEIRGFGSFALHHRE 62

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            RVGRN +T + V++  + V  FK    L+  + +  +
Sbjct: 63  PRVGRNPKTGKSVEVAAKAVPHFKPGKALRDAVNESAQ 100


>gi|319944338|ref|ZP_08018612.1| DNA-binding protein HU-beta [Lautropia mirabilis ATCC 51599]
 gi|319742299|gb|EFV94712.1| DNA-binding protein HU-beta [Lautropia mirabilis ATCC 51599]
          Length = 93

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 46/92 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +IS E  +S+  + R +T+  N I  +   G+ + +  F TFH  ++ SR G
Sbjct: 1  MNKSELIDTISSEADISKAAAERALTSAMNAIMKAVAEGDRVTLVGFGTFHASKRASRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N +T ++++I    V  F   +  K      
Sbjct: 61 LNPRTGEKIEIAAANVPKFTPGAAFKDAANKA 92


>gi|94312469|ref|YP_585679.1| HU family DNA-binding protein [Cupriavidus metallidurans CH34]
 gi|93356321|gb|ABF10410.1| histone-like DNA-binding protein (HU) [Cupriavidus metallidurans
          CH34]
          Length = 92

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++L+ +I+    GL++  + + +      I D+  +GE + +  F TF   ++G R+
Sbjct: 1  MTKTELIDAIAAGVDGLTKAKAEQALNVTLGAIMDAVAKGETLSLIGFGTFSKGERGERM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN +T +E+K++  + V FKA    K  +  
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVNQ 92


>gi|332827350|gb|EGK00110.1| hypothetical protein HMPREF9455_03576 [Dysgonomonas gadei ATCC
          BAA-286]
          Length = 88

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 45/85 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+++ GLS+ DS + +      +      G  + +  F TF V QK +R G
Sbjct: 1  MNKTELINAIAEKSGLSKVDSKKALEAFIESVTGEVKAGGKVALVGFGTFSVTQKAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N +T   + I  ++ V FKA + L
Sbjct: 61 INPRTKAVINIPAKKTVKFKAGADL 85


>gi|152979211|ref|YP_001344840.1| integration host factor, beta subunit [Actinobacillus
          succinogenes 130Z]
 gi|171704341|sp|A6VPK8|IHFB_ACTSZ RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|150840934|gb|ABR74905.1| integration host factor, beta subunit [Actinobacillus
          succinogenes 130Z]
          Length = 94

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ ++K+   +S K     V  +  ++  S    + I+I  F +F +  +  R+
Sbjct: 1  MTKSELIELLAKKNPSISTKIVENSVKEILEQMSGSLENSDRIEIRGFGSFSLHYRQPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + VK+D + V  FKA   LK+R+
Sbjct: 61 GRNPKTGESVKLDAKCVPHFKAGKELKERV 90


>gi|22299810|ref|NP_683057.1| DNA-binding protein HU [Thermosynechococcus elongatus BP-1]
 gi|22295994|dbj|BAC09819.1| DNA-binding protein HU [Thermosynechococcus elongatus BP-1]
          Length = 111

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 5  ITRSDLVKSISKEF----GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          + +++LV ++         +++K     ++    EI ++  +GE + +  F  F  +++ 
Sbjct: 4  MNKAELVDAVFNRAHSANNVTKKQVEAIISATVEEIMEAVAKGEKVTLVGFGAFERRERK 63

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          +R GRN +T ++++I    V  F A  + K+
Sbjct: 64 AREGRNPKTKEKMQIPATNVPAFSAGKLFKE 94


>gi|317055654|ref|YP_004104121.1| histone family protein DNA-binding protein [Ruminococcus albus 7]
 gi|315447923|gb|ADU21487.1| histone family protein DNA-binding protein [Ruminococcus albus 7]
          Length = 92

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+++ G ++K++   +  + + I ++  +GE + I  F TF V+ + ++  
Sbjct: 1  MKKAELLAAIAEKNGSTKKNAEAALDAVISTITEALEKGEKVAIPGFGTFEVRDRAAKKS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N  T + + +  ++V  FKA+  LK  +  
Sbjct: 61 INPATKEPIDVPAKKVPAFKAAKALKDAVDK 91


>gi|319947464|ref|ZP_08021696.1| DNA-binding protein HU [Streptococcus australis ATCC 700641]
 gi|315419725|gb|ADU15832.1| histone-like protein [Streptococcus parasanguinis]
 gi|319746404|gb|EFV98665.1| DNA-binding protein HU [Streptococcus australis ATCC 700641]
          Length = 91

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + +   +GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+KI   +V  FKA   LK  + 
Sbjct: 63 NPQTGKEIKIAASKVPAFKAGKALKDAVK 91


>gi|85859156|ref|YP_461358.1| DNA-binding protein HU [Syntrophus aciditrophicus SB]
 gi|85722247|gb|ABC77190.1| DNA-binding protein HU [Syntrophus aciditrophicus SB]
          Length = 90

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L+  I++E G+++  +++ + +  N +     +   + +  F TF V  + +R G
Sbjct: 1  MTKAELISVIAEEAGITKASASKALESYVNTVAKELNKTGKLGLVGFGTFSVVMREAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT   +KI  ++VV FK    L ++I 
Sbjct: 61 RNPQTGDIIKIPAKKVVKFKPGKELSEKIK 90


>gi|315419717|gb|ADU15828.1| histone-like protein [Streptococcus anginosus]
          Length = 91

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 47/89 (52%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + +    GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E+ I   +V  FKA   LK  I 
Sbjct: 63 NPQTGAEITIAASKVPTFKAGKALKDVIK 91


>gi|283954472|ref|ZP_06371992.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 414]
 gi|283794089|gb|EFC32838.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 414]
          Length = 98

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 51/97 (52%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D +  +++  GL++KD+T     + + I D   +G++I    F TF  +++ +R  
Sbjct: 1   MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           R   T + +K+   RVV FK    LK+ +      +K
Sbjct: 61  RVPSTGKTIKVPATRVVKFKVGKNLKEAVAKASGKKK 97


>gi|260550113|ref|ZP_05824327.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624]
 gi|260406868|gb|EEX00347.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624]
          Length = 100

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 1/98 (1%)

Query: 2   SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           ++ + +SDL++ I+ K   L+       V  + +++ ++      I+I  F +F +  + 
Sbjct: 3   TEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSTDNRIEIRGFGSFALHHRE 62

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            RVGRN +T + V +  + V  FK    L+  + +  +
Sbjct: 63  PRVGRNPKTGKSVDVAAKAVPHFKPGKALRDAVNESGK 100


>gi|221486645|gb|EEE24906.1| DNA-binding protein HU, putative [Toxoplasma gondii GT1]
          Length = 235

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 55/106 (51%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
              +TR DLV S++ E  + R +  + V+     I  S  +G+ + +S F +  ++++G 
Sbjct: 118 GSAVTRKDLVASVAAELQVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGE 177

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           RV RN +T +++ +       F  S +LK ++ + +   + +++D 
Sbjct: 178 RVARNPRTGEQLTVPATTFPTFSFSKVLKDKVREVIPAHEADEEDA 223


>gi|117924222|ref|YP_864839.1| HU family DNA-binding protein [Magnetococcus sp. MC-1]
 gi|117607978|gb|ABK43433.1| HU family DNA-binding protein [Magnetococcus sp. MC-1]
          Length = 91

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   +L K ++ + G+S+ D+ R V      I +S  +   + +  F TF V ++ +R G
Sbjct: 1  MNLGELKKIVADKTGMSQADAGRAVAATLEAISESLGQSATVSLLGFGTFSVGERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +++ I   R + FKA   L++++  
Sbjct: 61 RNPQTGEKINISASRTIRFKAGQSLREKVNG 91


>gi|22536684|ref|NP_687535.1| DNA-binding protein HU [Streptococcus agalactiae 2603V/R]
 gi|25010620|ref|NP_735015.1| DNA-binding protein HU [Streptococcus agalactiae NEM316]
 gi|76786815|ref|YP_329238.1| DNA-binding protein HU [Streptococcus agalactiae A909]
 gi|77405315|ref|ZP_00782411.1| DNA-binding protein HU [Streptococcus agalactiae H36B]
 gi|77414015|ref|ZP_00790187.1| DNA-binding protein HU [Streptococcus agalactiae 515]
 gi|22533525|gb|AAM99407.1|AE014215_1 DNA-binding protein HU [Streptococcus agalactiae 2603V/R]
 gi|23094974|emb|CAD46195.1| HU like DNA-binding protein [Streptococcus agalactiae NEM316]
 gi|76561872|gb|ABA44456.1| DNA-binding protein HU [Streptococcus agalactiae A909]
 gi|77159941|gb|EAO71080.1| DNA-binding protein HU [Streptococcus agalactiae 515]
 gi|77176110|gb|EAO78883.1| DNA-binding protein HU [Streptococcus agalactiae H36B]
 gi|319744552|gb|EFV96905.1| DNA-binding protein HU [Streptococcus agalactiae ATCC 13813]
          Length = 91

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 48/89 (53%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + D    GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFAAVADYLAEGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT  E++I   +V  FKA   LK  + 
Sbjct: 63 NPQTGAEIEIAASKVPAFKAGKALKDAVK 91


>gi|19912729|dbj|BAB88647.1| histone-like protein [Streptococcus intermedius]
 gi|187936837|dbj|BAG32216.1| histone-like DNA binding protein [Streptococcus intermedius]
          Length = 91

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 48/89 (53%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + +    GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFAAVTEFLSAGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+ I   +V  FKA   LK  + 
Sbjct: 63 NPQTGKEITIAASKVPAFKAGKALKDAVK 91


>gi|255320505|ref|ZP_05361686.1| integration host factor, beta subunit [Acinetobacter radioresistens
           SK82]
 gi|262378397|ref|ZP_06071554.1| integration host factor, beta subunit [Acinetobacter radioresistens
           SH164]
 gi|255302477|gb|EET81713.1| integration host factor, beta subunit [Acinetobacter radioresistens
           SK82]
 gi|262299682|gb|EEY87594.1| integration host factor, beta subunit [Acinetobacter radioresistens
           SH164]
          Length = 101

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 1/98 (1%)

Query: 2   SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           ++ + +SDL++ I+ K   L+       V  + +++ ++      I+I  F +F +  + 
Sbjct: 3   TEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSTDNRIEIRGFGSFALHHRE 62

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            RVGRN +T + V++  + V  FK    L+  + +   
Sbjct: 63  PRVGRNPKTGKAVEVAAKAVPHFKPGKALRDAVNESAN 100


>gi|53728750|ref|ZP_00135487.2| COG0776: Bacterial nucleoid DNA-binding protein [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
 gi|126208219|ref|YP_001053444.1| integration host factor subunit beta [Actinobacillus
          pleuropneumoniae L20]
 gi|165976155|ref|YP_001651748.1| integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 3 str. JL03]
 gi|190150051|ref|YP_001968576.1| integration host factor beta-subunit [Actinobacillus
          pleuropneumoniae serovar 7 str. AP76]
 gi|303251469|ref|ZP_07337645.1| integration host factor, beta subunit [Actinobacillus
          pleuropneumoniae serovar 6 str. Femo]
 gi|303252342|ref|ZP_07338508.1| integration host factor, beta subunit [Actinobacillus
          pleuropneumoniae serovar 2 str. 4226]
 gi|307245599|ref|ZP_07527685.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
 gi|307247719|ref|ZP_07529757.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 2 str. S1536]
 gi|307249952|ref|ZP_07531924.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 4 str. M62]
 gi|307252295|ref|ZP_07534192.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 6 str. Femo]
 gi|307254555|ref|ZP_07536389.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256762|ref|ZP_07538541.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 10 str. D13039]
 gi|307259009|ref|ZP_07540740.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 11 str. 56153]
 gi|307261205|ref|ZP_07542880.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 12 str. 1096]
 gi|307263384|ref|ZP_07545000.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 13 str. N273]
 gi|166918536|sp|A3N0A3|IHFB_ACTP2 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709766|sp|B3GXH5|IHFB_ACTP7 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|226709767|sp|B0BP19|IHFB_ACTPJ RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|126097011|gb|ABN73839.1| integration host factor beta-subunit [Actinobacillus
          pleuropneumoniae serovar 5b str. L20]
 gi|165876256|gb|ABY69304.1| integration host factor, beta subunit [Actinobacillus
          pleuropneumoniae serovar 3 str. JL03]
 gi|189915182|gb|ACE61434.1| integration host factor beta-subunit [Actinobacillus
          pleuropneumoniae serovar 7 str. AP76]
 gi|302648801|gb|EFL78991.1| integration host factor, beta subunit [Actinobacillus
          pleuropneumoniae serovar 2 str. 4226]
 gi|302649701|gb|EFL79881.1| integration host factor, beta subunit [Actinobacillus
          pleuropneumoniae serovar 6 str. Femo]
 gi|306853301|gb|EFM85520.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
 gi|306855749|gb|EFM87914.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 2 str. S1536]
 gi|306858012|gb|EFM90096.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 4 str. M62]
 gi|306860217|gb|EFM92233.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 6 str. Femo]
 gi|306862492|gb|EFM94452.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306864810|gb|EFM96714.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 10 str. D13039]
 gi|306867033|gb|EFM98890.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 11 str. 56153]
 gi|306868936|gb|EFN00738.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 12 str. 1096]
 gi|306871262|gb|EFN02990.1| Integration host factor subunit beta [Actinobacillus
          pleuropneumoniae serovar 13 str. N273]
          Length = 93

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+++ +S    L  K     V  +  +I     RGE +++  F +F +  +  RV
Sbjct: 1  MTKSELIENLVSLNPALQVKSVEDGVKEILEQIMLFLERGERVEVRGFGSFSLHYRQPRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T + VK+D + V  FKA   LK+R+
Sbjct: 61 GRNPKTGESVKLDAKYVPHFKAGKDLKERV 90


>gi|319900802|ref|YP_004160530.1| bacterial nucleoid protein Hbs [Bacteroides helcogenes P 36-108]
 gi|319415833|gb|ADV42944.1| bacterial nucleoid protein Hbs [Bacteroides helcogenes P 36-108]
          Length = 88

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 48/85 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ E GL++ DS + +      +  +   GE + +  F TF V ++ +R+G
Sbjct: 1  MNKAELISAMAAEAGLTKADSKKALDAFVVSVTKAMKAGEKVSLVGFGTFAVAERSARMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N  T + ++I  ++VV FK  + L
Sbjct: 61 INPSTKKPIEIAAKKVVKFKPGAEL 85


>gi|300115489|ref|YP_003762064.1| histone family protein DNA-binding protein [Nitrosococcus
          watsonii C-113]
 gi|299541426|gb|ADJ29743.1| histone family protein DNA-binding protein [Nitrosococcus
          watsonii C-113]
          Length = 94

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 48/94 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV  +  E  LS+  + R V  LF  I         + ++ F +F V+++ +R G
Sbjct: 1  MNKTELVNFVVLEANLSQAVAQRAVNALFQTITGVLSEKGKVNLAGFGSFSVQKRAARSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          R+ Q+ + + I  + V  FK S+ LK+ +    R
Sbjct: 61 RHPQSGEVIAIQAKSVPTFKPSNALKEIVQQRKR 94


>gi|221508402|gb|EEE33989.1| DNA-binding protein HU, putative [Toxoplasma gondii VEG]
          Length = 235

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 55/106 (51%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
              +TR DLV S++ E  + R +  + V+     I  S  +G+ + +S F +  ++++G 
Sbjct: 118 GSAVTRKDLVASVAAELQVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGE 177

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           RV RN +T +++ +       F  S +LK ++ + +   + +++D 
Sbjct: 178 RVARNPRTGEQLTVPATTFPTFSFSKVLKDKVREVIPAHEADEEDA 223


>gi|113869620|ref|YP_728109.1| HU family DNA-binding protein [Ralstonia eutropha H16]
 gi|113528396|emb|CAJ94741.1| DNA-binding protein HU family [Ralstonia eutropha H16]
          Length = 92

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++L+ +I+    GL++  + + +    + I D+  +GE + +  F TF   ++G R+
Sbjct: 1  MTKTELIDAIAAGVDGLTKSKAEQALNVTLSAIMDAVAKGETLSLIGFGTFSKGERGERM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN +T +E+K++  + V FKA    K  +  
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVNQ 92


>gi|258647295|ref|ZP_05734764.1| DNA-binding protein HU, beta subunit [Prevotella tannerae ATCC
          51259]
 gi|260852812|gb|EEX72681.1| DNA-binding protein HU, beta subunit [Prevotella tannerae ATCC
          51259]
          Length = 90

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV +I+   GLS+ DS + +      I  +    + + +  F TF V ++ +  G
Sbjct: 1  MNKSELVSAIAASAGLSKVDSKKALDATLEAIAGALKANDKVALLGFGTFAVTERPAHDG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T +++ I  ++V+ FKA + L   + 
Sbjct: 61 VNPATKEKIHIPAKKVIKFKAGAELSGALN 90


>gi|158521728|ref|YP_001529598.1| histone family protein DNA-binding protein [Desulfococcus
          oleovorans Hxd3]
 gi|158510554|gb|ABW67521.1| histone family protein DNA-binding protein [Desulfococcus
          oleovorans Hxd3]
          Length = 90

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRV 63
          +T+S+L+  ++KE G+S+  +   + +  + +  +  + E  + +  F TF   ++ +R 
Sbjct: 1  MTKSELIDKMAKEAGISKVAAGAALNSFMDGVSKALKKKEGKVTLVGFGTFSKVRRKARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QT + +KI    VV FKA   LK  I
Sbjct: 61 GRNPQTGEPIKIKAGNVVKFKAGKKLKDAI 90


>gi|303248758|ref|ZP_07335010.1| histone family protein DNA-binding protein [Desulfovibrio
          fructosovorans JJ]
 gi|302489845|gb|EFL49774.1| histone family protein DNA-binding protein [Desulfovibrio
          fructosovorans JJ]
          Length = 91

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + ++D++  I    G+ ++ ++ + +  +   I DS V GEA+ ++ F TF V ++ +R 
Sbjct: 1  MAKTDIIAKIQANAGIATKAEAGKVLDAVLAAIQDSLVAGEALTLTGFGTFKVSERAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GR+ +T   + I   + V F     LK  + 
Sbjct: 61 GRDPRTGNAIDIPASKAVRFTPGKTLKDAVK 91


>gi|262278925|ref|ZP_06056710.1| nucleoid DNA-binding protein [Acinetobacter calcoaceticus RUH2202]
 gi|299770391|ref|YP_003732417.1| integration host factor, beta subunit [Acinetobacter sp. DR1]
 gi|262259276|gb|EEY78009.1| nucleoid DNA-binding protein [Acinetobacter calcoaceticus RUH2202]
 gi|298700479|gb|ADI91044.1| integration host factor, beta subunit [Acinetobacter sp. DR1]
          Length = 100

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 49/98 (50%), Gaps = 1/98 (1%)

Query: 2   SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           ++ + +SDL++ I+ K   L+       V  + +++ ++      I+I  F +F +  + 
Sbjct: 3   TEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSTDNRIEIRGFGSFALHHRD 62

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            RVGRN +T + V++  + V  FK    L+  + +  +
Sbjct: 63  PRVGRNPKTGRSVEVAAKAVPHFKPGKALRDAVNESGK 100


>gi|145629273|ref|ZP_01785072.1| integration host factor beta-subunit [Haemophilus influenzae
          22.1-21]
 gi|145633319|ref|ZP_01789050.1| hypothetical protein CGSHi3655_03781 [Haemophilus influenzae
          3655]
 gi|145634450|ref|ZP_01790160.1| hypothetical protein CGSHiAA_06654 [Haemophilus influenzae
          PittAA]
 gi|145636917|ref|ZP_01792582.1| hypothetical protein CGSHiHH_01512 [Haemophilus influenzae
          PittHH]
 gi|145641112|ref|ZP_01796693.1| integration host factor beta-subunit [Haemophilus influenzae
          R3021]
 gi|148827069|ref|YP_001291822.1| integration host factor subunit beta [Haemophilus influenzae
          PittGG]
 gi|166918549|sp|A5UF83|IHFB_HAEIG RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|144978776|gb|EDJ88499.1| integration host factor beta-subunit [Haemophilus influenzae
          22.1-21]
 gi|144986165|gb|EDJ92755.1| hypothetical protein CGSHi3655_03781 [Haemophilus influenzae
          3655]
 gi|145268430|gb|EDK08424.1| hypothetical protein CGSHiAA_06654 [Haemophilus influenzae
          PittAA]
 gi|145269998|gb|EDK09936.1| hypothetical protein CGSHiHH_01512 [Haemophilus influenzae
          PittHH]
 gi|145274273|gb|EDK14138.1| integration host factor beta-subunit [Haemophilus influenzae
          22.4-21]
 gi|148718311|gb|ABQ99438.1| hypothetical protein CGSHiGG_01900 [Haemophilus influenzae
          PittGG]
 gi|301169962|emb|CBW29566.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Haemophilus influenzae 10810]
          Length = 94

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + +K+  L  K+    V  +   I  S   G+ +++  F +F +  +  R+
Sbjct: 1  MTKSELMEKLSAKQPTLPAKEIENMVKDILEFISQSLENGDRVEVRGFGSFSLHHRQPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  + V  FKA   LK R+
Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARV 90


>gi|297538718|ref|YP_003674487.1| histone family protein DNA-binding protein [Methylotenera sp.
          301]
 gi|297258065|gb|ADI29910.1| histone family protein DNA-binding protein [Methylotenera sp.
          301]
          Length = 90

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ SI+   GLS+  + R +      I  +  +G+ + +  F TF+V ++ +R G
Sbjct: 1  MNKSELIDSIASASGLSKAAAGRALDATTAAITAAMKKGDLVTLIGFGTFYVGKREARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   +KI       F+A   LK  + 
Sbjct: 61 RNPRTGATIKIKAANSPKFRAGKSLKDAVN 90


>gi|160934238|ref|ZP_02081625.1| hypothetical protein CLOLEP_03109 [Clostridium leptum DSM 753]
 gi|156866911|gb|EDO60283.1| hypothetical protein CLOLEP_03109 [Clostridium leptum DSM 753]
          Length = 84

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 43/83 (51%)

Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQE 72
          +++++  +S+KD+   V  + + I ++  + E +++  F TF V+ +  R GR+ +TN  
Sbjct: 2  AVAEKANISKKDADTAVNAVIDTIVETLAKDEKVQLVGFGTFEVRSRSERQGRDPRTNSP 61

Query: 73 VKIDPRRVVVFKASSILKKRIMD 95
          + I   +V  FK     K  I  
Sbjct: 62 ITIPASKVPAFKVGKAFKSAIDK 84


>gi|169832956|ref|YP_001694534.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae Hungary19A-6]
 gi|168995458|gb|ACA36070.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae Hungary19A-6]
          Length = 91

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 47/89 (52%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + D    GE +++  F  F V+++  R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVEAVFVAVADYLAAGEKVQLIGFGNFEVRERAERKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+ I   +V  FKA   LK  + 
Sbjct: 63 NPQTGKEMTIAASKVPAFKAGKALKDAVK 91


>gi|15900980|ref|NP_345584.1| DNA-binding protein HU [Streptococcus pneumoniae TIGR4]
 gi|15903064|ref|NP_358614.1| DNA-binding protein HU [Streptococcus pneumoniae R6]
 gi|111658012|ref|ZP_01408716.1| hypothetical protein SpneT_02000809 [Streptococcus pneumoniae
          TIGR4]
 gi|116516205|ref|YP_816472.1| DNA-binding protein HU [Streptococcus pneumoniae D39]
 gi|148985086|ref|ZP_01818329.1| DNA-binding protein HU [Streptococcus pneumoniae SP3-BS71]
 gi|148989157|ref|ZP_01820547.1| DNA-binding protein HU [Streptococcus pneumoniae SP6-BS73]
 gi|148994562|ref|ZP_01823721.1| DNA-binding protein HU [Streptococcus pneumoniae SP9-BS68]
 gi|148998383|ref|ZP_01825825.1| DNA-binding protein HU [Streptococcus pneumoniae SP11-BS70]
 gi|149003768|ref|ZP_01828600.1| DNA-binding protein HU [Streptococcus pneumoniae SP14-BS69]
 gi|149006210|ref|ZP_01829922.1| DNA-binding protein HU [Streptococcus pneumoniae SP18-BS74]
 gi|149012891|ref|ZP_01833804.1| DNA-binding protein HU [Streptococcus pneumoniae SP19-BS75]
 gi|149024915|ref|ZP_01836316.1| DNA-binding protein HU [Streptococcus pneumoniae SP23-BS72]
 gi|168483191|ref|ZP_02708143.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae CDC1873-00]
 gi|168486472|ref|ZP_02710980.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae CDC1087-00]
 gi|168488958|ref|ZP_02713157.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae SP195]
 gi|168492008|ref|ZP_02716151.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae CDC0288-04]
 gi|168493057|ref|ZP_02717200.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae CDC3059-06]
 gi|168576162|ref|ZP_02722056.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae MLV-016]
 gi|182684138|ref|YP_001835885.1| DNA-binding protein HU [Streptococcus pneumoniae CGSP14]
 gi|194397873|ref|YP_002037741.1| DNA-binding protein HU [Streptococcus pneumoniae G54]
 gi|221231850|ref|YP_002511002.1| DNA-binding protein HU [Streptococcus pneumoniae ATCC 700669]
 gi|225854609|ref|YP_002736121.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae JJA]
 gi|225856753|ref|YP_002738264.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae P1031]
 gi|225858923|ref|YP_002740433.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae 70585]
 gi|225861076|ref|YP_002742585.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae Taiwan19F-14]
 gi|237650781|ref|ZP_04525033.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae CCRI 1974]
 gi|237822369|ref|ZP_04598214.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229872|ref|ZP_06963553.1| DNA-binding protein HU [Streptococcus pneumoniae str. Canada
          MDR_19F]
 gi|298254158|ref|ZP_06977744.1| DNA-binding protein HU [Streptococcus pneumoniae str. Canada
          MDR_19A]
 gi|298502870|ref|YP_003724810.1| DNA-binding protein HU [Streptococcus pneumoniae TCH8431/19A]
 gi|303254179|ref|ZP_07340291.1| DNA-binding protein HU [Streptococcus pneumoniae BS455]
 gi|303259776|ref|ZP_07345751.1| DNA-binding protein HU [Streptococcus pneumoniae SP-BS293]
 gi|303262951|ref|ZP_07348886.1| DNA-binding protein HU [Streptococcus pneumoniae SP14-BS292]
 gi|303264913|ref|ZP_07350829.1| DNA-binding protein HU [Streptococcus pneumoniae BS397]
 gi|303266894|ref|ZP_07352772.1| DNA-binding protein HU [Streptococcus pneumoniae BS457]
 gi|303268930|ref|ZP_07354715.1| DNA-binding protein HU [Streptococcus pneumoniae BS458]
 gi|307067705|ref|YP_003876671.1| nucleoid DNA-binding protein [Streptococcus pneumoniae AP200]
 gi|307127356|ref|YP_003879387.1| DNA-binding protein HU 1 [Streptococcus pneumoniae 670-6B]
 gi|14972589|gb|AAK75224.1| DNA-binding protein HU [Streptococcus pneumoniae TIGR4]
 gi|15458637|gb|AAK99824.1| Histone-like DNA-binding protein [Streptococcus pneumoniae R6]
 gi|116076781|gb|ABJ54501.1| DNA-binding protein HU [Streptococcus pneumoniae D39]
 gi|147755780|gb|EDK62825.1| DNA-binding protein HU [Streptococcus pneumoniae SP11-BS70]
 gi|147758214|gb|EDK65216.1| DNA-binding protein HU [Streptococcus pneumoniae SP14-BS69]
 gi|147761987|gb|EDK68949.1| DNA-binding protein HU [Streptococcus pneumoniae SP18-BS74]
 gi|147763180|gb|EDK70120.1| DNA-binding protein HU [Streptococcus pneumoniae SP19-BS75]
 gi|147922784|gb|EDK73901.1| DNA-binding protein HU [Streptococcus pneumoniae SP3-BS71]
 gi|147925380|gb|EDK76458.1| DNA-binding protein HU [Streptococcus pneumoniae SP6-BS73]
 gi|147927156|gb|EDK78193.1| DNA-binding protein HU [Streptococcus pneumoniae SP9-BS68]
 gi|147929538|gb|EDK80532.1| DNA-binding protein HU [Streptococcus pneumoniae SP23-BS72]
 gi|172043527|gb|EDT51573.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae CDC1873-00]
 gi|182629472|gb|ACB90420.1| DNA-binding protein HU [Streptococcus pneumoniae CGSP14]
 gi|183570502|gb|EDT91030.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae CDC1087-00]
 gi|183572358|gb|EDT92886.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae SP195]
 gi|183573808|gb|EDT94336.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae CDC0288-04]
 gi|183576766|gb|EDT97294.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae CDC3059-06]
 gi|183577917|gb|EDT98445.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae MLV-016]
 gi|194357540|gb|ACF55988.1| DNA-binding protein HU [Streptococcus pneumoniae G54]
 gi|220674310|emb|CAR68853.1| DNA-binding protein HU [Streptococcus pneumoniae ATCC 700669]
 gi|225721544|gb|ACO17398.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae 70585]
 gi|225723096|gb|ACO18949.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae JJA]
 gi|225724771|gb|ACO20623.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae P1031]
 gi|225727077|gb|ACO22928.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238465|gb|ADI69596.1| DNA-binding protein HU [Streptococcus pneumoniae TCH8431/19A]
 gi|301794226|emb|CBW36646.1| DNA-binding protein HU [Streptococcus pneumoniae INV104]
 gi|301800078|emb|CBW32675.1| DNA-binding protein HU [Streptococcus pneumoniae OXC141]
 gi|301801998|emb|CBW34727.1| DNA-binding protein HU [Streptococcus pneumoniae INV200]
 gi|302598850|gb|EFL65884.1| DNA-binding protein HU [Streptococcus pneumoniae BS455]
 gi|302635928|gb|EFL66428.1| DNA-binding protein HU [Streptococcus pneumoniae SP14-BS292]
 gi|302638981|gb|EFL69441.1| DNA-binding protein HU [Streptococcus pneumoniae SP-BS293]
 gi|302641548|gb|EFL71910.1| DNA-binding protein HU [Streptococcus pneumoniae BS458]
 gi|302643592|gb|EFL73861.1| DNA-binding protein HU [Streptococcus pneumoniae BS457]
 gi|302645601|gb|EFL75832.1| DNA-binding protein HU [Streptococcus pneumoniae BS397]
 gi|306409242|gb|ADM84669.1| Bacterial nucleoid DNA-binding protein [Streptococcus pneumoniae
          AP200]
 gi|306484418|gb|ADM91287.1| DNA-binding protein HU 1 [Streptococcus pneumoniae 670-6B]
 gi|315419703|gb|ADU15821.1| histone-like protein [Streptococcus pseudopneumoniae]
 gi|327389329|gb|EGE87674.1| bacterial DNA-binding family protein [Streptococcus pneumoniae
          GA04375]
 gi|332073475|gb|EGI83954.1| bacterial DNA-binding family protein [Streptococcus pneumoniae
          GA17570]
 gi|332075067|gb|EGI85538.1| bacterial DNA-binding family protein [Streptococcus pneumoniae
          GA17545]
 gi|332075447|gb|EGI85916.1| bacterial DNA-binding family protein [Streptococcus pneumoniae
          GA41301]
 gi|332200509|gb|EGJ14581.1| bacterial DNA-binding family protein [Streptococcus pneumoniae
          GA41317]
 gi|332201601|gb|EGJ15671.1| bacterial DNA-binding family protein [Streptococcus pneumoniae
          GA47368]
 gi|332202970|gb|EGJ17038.1| bacterial DNA-binding family protein [Streptococcus pneumoniae
          GA47901]
          Length = 91

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 47/89 (52%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + D    GE +++  F  F V+++  R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVEAVFAAVADYLAAGEKVQLIGFGNFEVRERAERKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+ I   +V  FKA   LK  + 
Sbjct: 63 NPQTGKEMTIAASKVPAFKAGKALKDAVK 91


>gi|296536157|ref|ZP_06898285.1| DNA-binding protein HU [Roseomonas cervicalis ATCC 49957]
 gi|296263528|gb|EFH10025.1| DNA-binding protein HU [Roseomonas cervicalis ATCC 49957]
          Length = 90

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 44/87 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLV  +++   LS+  +   +  +F+ I  S    + +++  F TF   ++ +  G
Sbjct: 1  MNKQDLVAVVAETGELSKAKAGEVLDAVFDAISQSLKAKQEVRLVGFGTFSTSRRKAGKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T +E++I     V FKA   LK 
Sbjct: 61 RNPRTGEEIEIAATTTVRFKAGKALKD 87


>gi|288986945|ref|YP_003456908.1| integration host factor, beta subunit [Allochromatium vinosum DSM
          180]
 gi|288898324|gb|ADC64158.1| integration host factor, beta subunit [Allochromatium vinosum DSM
          180]
          Length = 95

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRS+L+  ++ ++  L   D    V  L N + +S   GE I++  F +F +  +  R 
Sbjct: 1  MTRSELITQMANRQEHLPEADVEVVVKALLNLLRESLANGERIEVRGFGSFSLHYRPPRQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN +T + V    +  + FK    L++R+ 
Sbjct: 61 ARNPKTGETVFTAGKHYLHFKPGKELRERVN 91


>gi|237834245|ref|XP_002366420.1| DNA-binding protein HU, putative [Toxoplasma gondii ME49]
 gi|211964084|gb|EEA99279.1| DNA-binding protein HU, putative [Toxoplasma gondii ME49]
          Length = 235

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 55/106 (51%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
              +TR DLV S++ E  + R +  + V+     I  S  +G+ + +S F +  ++++G 
Sbjct: 118 GSAVTRKDLVASVAAELQVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGE 177

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           RV RN +T +++ +       F  S +LK ++ + +   + +++D 
Sbjct: 178 RVARNPRTGEQLTVPATTFPTFSFSKVLKDKVREVIPAHEADEEDA 223


>gi|312867148|ref|ZP_07727358.1| DNA-binding protein HU-alpha [Streptococcus parasanguinis F0405]
 gi|322389040|ref|ZP_08062608.1| DNA-binding protein HU [Streptococcus parasanguinis ATCC 903]
 gi|311097277|gb|EFQ55511.1| DNA-binding protein HU-alpha [Streptococcus parasanguinis F0405]
 gi|321144263|gb|EFX39673.1| DNA-binding protein HU [Streptococcus parasanguinis ATCC 903]
          Length = 91

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 51/89 (57%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + +   +GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+KI   +V  FKA   LK+ + 
Sbjct: 63 NPQTGKEIKIAASKVPAFKAGKALKEAVK 91


>gi|157364264|ref|YP_001471031.1| histone family protein DNA-binding protein [Thermotoga lettingae
          TMO]
 gi|157314868|gb|ABV33967.1| histone family protein DNA-binding protein [Thermotoga lettingae
          TMO]
          Length = 90

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 52/90 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV  +SK+ GL +KD  + V  +F+ + D+  +GE +++  F +F V++   R G
Sbjct: 1  MNKKELVDKVSKKAGLKKKDVKKVVDMVFDTVTDALAKGEKVQLVGFGSFEVRKAAQRKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N QT + + I  R+V  FK    LK+++ 
Sbjct: 61 VNPQTKKPITIPSRKVPKFKPGKALKEKVK 90


>gi|317153197|ref|YP_004121245.1| histone family protein DNA-binding protein [Desulfovibrio
          aespoeensis Aspo-2]
 gi|316943448|gb|ADU62499.1| histone family protein DNA-binding protein [Desulfovibrio
          aespoeensis Aspo-2]
          Length = 91

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K++S++  +   ++T+ V    + + ++ +RG+ ++I  F +F +K      G
Sbjct: 1  MNKSELIKALSEQKKMHVDEATKVVGAFVDSVKEALLRGDRVEIRGFGSFKIKDYEGYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T   V++  +++  F+    LK+ I D
Sbjct: 61 RNPKTGSVVQVRSKKLPFFRPGKELKEFIND 91


>gi|72161032|ref|YP_288689.1| histone-like DNA-binding protein [Thermobifida fusca YX]
 gi|71914764|gb|AAZ54666.1| Histone-like bacterial DNA-binding protein [Thermobifida fusca
          YX]
          Length = 93

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+ +IS   G  +K +T  V  +   I  +  +G+ + I+ F  F   Q+ +R  
Sbjct: 1  MNKRDLIDAISGRLG-DKKTATEAVNAVLETIQQTVAKGDKVAITGFGVFEKAQRAARTA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN  T   + +    V  F+  +  K  + +  +
Sbjct: 60 RNPSTGATIHVPASYVPKFRPGADFKALVNNGKK 93


>gi|325292629|ref|YP_004278493.1| histone-like protein [Agrobacterium sp. H13-3]
 gi|325060482|gb|ADY64173.1| histone-like protein [Agrobacterium sp. H13-3]
          Length = 91

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ GL++ D+   V  +F  + +    G  I+++ F +F V ++ +  G
Sbjct: 1  MNKNELVSAVAEKAGLTKADAASAVDAVFETVQNELKSGGDIRLAGFGSFSVSRREASKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T  EV I  R V  F A   LK  + 
Sbjct: 61 RNPSTGAEVDIPARNVPKFSAGKGLKDAVN 90


>gi|172055154|ref|YP_001806481.1| DNA binding protein HU [Cyanothece sp. ATCC 51142]
 gi|171701435|gb|ACB54415.1| DNA binding protein HU [Cyanothece sp. ATCC 51142]
          Length = 92

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 43/90 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  LVK+I+ E G  +   T+ +      I ++   G+ I +  F TF  + +  R G
Sbjct: 1  MNKEQLVKAIAAETGQPQSVVTKILNATTETIVETVANGDKITLVGFGTFEPRDRKERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT + + I    +  F AS   K+++ 
Sbjct: 61 KNPQTGEPLTIPATTIPAFSASKAFKEKVK 90


>gi|325118559|emb|CBZ54110.1| putative DNA-binding protein HU [Neospora caninum Liverpool]
          Length = 221

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 53/99 (53%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S+ +TR DLV S++ E  LSR D  R V  L   I  S  +G+ + IS F +F ++++G 
Sbjct: 103 SQVVTRKDLVASVAAELQLSRADVERTVGALLRHIAASLEQGQKVSISKFGSFGLRRRGE 162

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RV RN +T + + +       F  S +LK ++ D M   
Sbjct: 163 RVARNPRTGEPLNVPATTFPTFSFSKVLKDKVRDVMPAH 201


>gi|270700801|ref|ZP_06223048.1| integration host factor, beta subunit [Haemophilus influenzae
          HK1212]
 gi|319896915|ref|YP_004135110.1| integration host factor beta-subunit [Haemophilus influenzae
          F3031]
 gi|329123270|ref|ZP_08251838.1| integration host factor beta subunit [Haemophilus aegyptius ATCC
          11116]
 gi|270315863|gb|EFA27957.1| integration host factor, beta subunit [Haemophilus influenzae
          HK1212]
 gi|317432419|emb|CBY80774.1| Integration host factor beta-subunit [Haemophilus influenzae
          F3031]
 gi|327471479|gb|EGF16927.1| integration host factor beta subunit [Haemophilus aegyptius ATCC
          11116]
          Length = 94

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + +K+  L  K+    V  +   I  S  +G+ +++  F +F +  +  R+
Sbjct: 1  MTKSELMEKLSAKQPTLPAKEIENMVKDILEFISQSLEKGDRVEVRGFGSFSLHHRQPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  + V  FKA   LK R+
Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARV 90


>gi|197121150|ref|YP_002133101.1| histone family protein DNA-binding protein [Anaeromyxobacter sp. K]
 gi|220915851|ref|YP_002491155.1| histone family protein DNA-binding protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|196170999|gb|ACG71972.1| histone family protein DNA-binding protein [Anaeromyxobacter sp. K]
 gi|219953705|gb|ACL64089.1| histone family protein DNA-binding protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 115

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 54/101 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +SDL+  +  + G+++K +   + T+F+ + D+  +GE I+I     FHVK      G
Sbjct: 1   MLKSDLINILVVKRGVTQKQAEATIETIFDSMKDALCKGENIEIRGLGAFHVKHYDGYQG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           RN +T + + + P+R ++F+    L+ R+       K ++ 
Sbjct: 61  RNPKTGEVIPVKPKRGILFRTGKELRDRVNRPELVAKPSQP 101


>gi|11467715|ref|NP_050767.1| DNA-binding protein hu homolog [Guillardia theta]
 gi|118265|sp|P29214|DBH_GUITH RecName: Full=DNA-binding protein HU homolog; AltName:
          Full=Histone-like protein
 gi|99344|pir||B41609 hlpA protein - Cryptomonas sp. chloroplast (strain Phi)
 gi|3603040|gb|AAC35701.1| DNA-binding protein hu homolog [Guillardia theta]
          Length = 93

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+     S+ D  + +T++   I D+   GE + +  F +F  +++ +R G
Sbjct: 1  MNKSQLISKIAYYTKYSKTDIEKIITSMLEIIVDTVATGEKVTLVGFGSFEARERKAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T +++ +   R+  F   +  + ++  
Sbjct: 61 RNPRTGEKLFLPASRIPTFSVGNFFRNKVNK 91


>gi|325275144|ref|ZP_08141117.1| histone family protein DNA-binding protein [Pseudomonas sp. TJI-51]
 gi|324099716|gb|EGB97589.1| histone family protein DNA-binding protein [Pseudomonas sp. TJI-51]
          Length = 101

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 1/100 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + + +L   I+++  L+++ + + +  + + I  +  + + + +  F TF  + +G+R G
Sbjct: 1   MRKPELAAVIAEKADLTKEKANQVLNAILDSITGALDK-DTVTLVGFGTFEKRHRGARTG 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           +N QT Q VKI     V FK    L+  +       K +K
Sbjct: 60  KNPQTGQPVKIKASNTVAFKPGKNLRDSVNTPAAPSKASK 99


>gi|16273140|ref|NP_439377.1| integration host factor subunit beta [Haemophilus influenzae Rd
          KW20]
 gi|260581140|ref|ZP_05848960.1| integration host factor, beta subunit [Haemophilus influenzae
          RdAW]
 gi|1170525|sp|P43724|IHFB_HAEIN RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|1574152|gb|AAC22874.1| integration host factor, beta-subunit (himD) [Haemophilus
          influenzae Rd KW20]
 gi|260092168|gb|EEW76111.1| integration host factor, beta subunit [Haemophilus influenzae
          RdAW]
          Length = 94

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + +K+  L  K+    V  +   I  S   G+ +++  F +F +  +  R+
Sbjct: 1  MTKSELMEKLSAKQPTLPAKEIENMVKGILEFISQSLENGDRVEVRGFGSFSLHHRQPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  + V  FKA   LK R+
Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARV 90


>gi|26991989|ref|NP_747414.1| histone family protein DNA-binding protein [Pseudomonas putida
           KT2440]
 gi|148550422|ref|YP_001270524.1| histone family protein DNA-binding protein [Pseudomonas putida F1]
 gi|24987121|gb|AAN70878.1|AE016732_3 DNA-binding protein HU-alpha [Pseudomonas putida KT2440]
 gi|148514480|gb|ABQ81340.1| bacterial nucleoid protein HU alpha subunit [Pseudomonas putida F1]
 gi|313501287|gb|ADR62653.1| HupA [Pseudomonas putida BIRD-1]
          Length = 99

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 1/100 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + + +L   I+ +  L+++ + + +  + + I  +  + + + +  F TF  + +G+R G
Sbjct: 1   MRKPELAAVIADKADLTKEKANQVLNAILDSITGALDK-DTVTLVGFGTFEKRHRGARTG 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           +N QT + VKI     V FK    L+  +    +  K  K
Sbjct: 60  KNPQTGEPVKIKASNTVAFKPGKNLRDSVNAPAKPAKKGK 99


>gi|328954010|ref|YP_004371344.1| histone family protein DNA-binding protein [Desulfobacca
          acetoxidans DSM 11109]
 gi|328454334|gb|AEB10163.1| histone family protein DNA-binding protein [Desulfobacca
          acetoxidans DSM 11109]
          Length = 90

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 43/90 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +L+  I+    + + D  R +      + D   +   I ++ F TF V ++  R G
Sbjct: 1  MTKGELISQIAVAGQVKKADVERTLNAFIKTMVDILQQQGRISLAGFGTFTVTERREREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI   +VV FK    LK  I 
Sbjct: 61 RNPQTGEPIKIAATKVVKFKPGKSLKDTIK 90


>gi|254496694|ref|ZP_05109557.1| integration host factor beta subunit [Legionella drancourtii
          LLAP12]
 gi|254354122|gb|EET12794.1| integration host factor beta subunit [Legionella drancourtii
          LLAP12]
          Length = 105

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ I+     L+ K     +  +   + D+ ++ + I+I  F +F +  +  R 
Sbjct: 1  MIKSELIEHIAARMTHLTEKQVADGINRILELMSDALIKNQRIEIRGFGSFSLHYRPPRN 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            N +T ++V    +    FK    L++R+
Sbjct: 61 AHNPKTGEKVVTKAKYSPHFKPGKELRERV 90


>gi|61222639|sp|P0A3H3|DBH1_RHILE RecName: Full=DNA-binding protein HRL18
 gi|61222641|sp|P0A3H4|DBH1_AGRTU RecName: Full=DNA-binding protein HRL18
          Length = 91

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ GL++ D+   V  +F  +      G  I+++ F +F V ++ +  G
Sbjct: 1  MNKNELVSAVAEKAGLTKADAASAVDAVFETVQSELKNGGDIRLAGFGSFSVSRREASKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T  EV I  R V  F A   LK  + 
Sbjct: 61 RNPSTGAEVDIPARNVPKFSAGKGLKDAVN 90


>gi|269958037|ref|YP_003327826.1| histone family protein DNA-binding protein [Xylanimonas
          cellulosilytica DSM 15894]
 gi|269306718|gb|ACZ32268.1| histone family protein DNA-binding protein [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 93

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 51/92 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ +S+LV +I+ +  L++  +   +      + +S  +GEA+K++   +    ++ +R 
Sbjct: 2  SLNKSELVSAIAAKSELTKAQAEDALNAFQEVLVESLAKGEAVKLTGLLSIERVERAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +E++I     V   A S+LKK + +
Sbjct: 62 GRNPRTGEEIQIPAGFGVKVSAGSVLKKAVSE 93


>gi|222085567|ref|YP_002544097.1| bacterial nucleoid DNA-binding protein [Agrobacterium radiobacter
          K84]
 gi|221723015|gb|ACM26171.1| bacterial nucleoid DNA-binding protein [Agrobacterium radiobacter
          K84]
          Length = 91

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ G+++ D+   V  +F+ +     +G  I+++ F +F V  + +  G
Sbjct: 1  MNKNELVSAVAEKAGITKADAASAVDAVFDAVQAELKKGGDIRLAGFGSFTVSHRAASKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T  EV I  R V  F     LK  + 
Sbjct: 61 RNPSTGAEVDIAARNVPKFTPGKGLKDAVN 90


>gi|91790778|ref|YP_551729.1| histone-like DNA-binding protein [Polaromonas sp. JS666]
 gi|91700658|gb|ABE46831.1| histone-like DNA-binding protein [Polaromonas sp. JS666]
          Length = 103

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R++L+ +I+ E  LS+  + R +  L   I  +  +G+ +++  F TF   ++ +R G
Sbjct: 1  MNRAELIDTIAAETDLSKAATGRVLEVLLETIQKAVKKGDGVQLVGFGTFKSTKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +N +T + VKI    V  F A +  K  +
Sbjct: 61 KNPRTGEAVKIPATTVPKFVAGAKFKAVV 89


>gi|332886429|gb|EGK06673.1| hypothetical protein HMPREF9456_00547 [Dysgonomonas mossii DSM
          22836]
          Length = 88

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 46/85 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+++ GLS+ DS + +      + +   +   + +  F TF V QK +R G
Sbjct: 1  MNKTELINAIAEKSGLSKVDSKKALEAFIESVTEEVKKDGKVALVGFGTFSVTQKAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N +T   + I  ++ V FKA + L
Sbjct: 61 INPRTKAVINIPAKKTVKFKAGADL 85


>gi|303258448|ref|ZP_07344451.1| integration host factor subunit alpha [Burkholderiales bacterium
           1_1_47]
 gi|330999748|ref|ZP_08323456.1| putative integration host factor, alpha subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|302858894|gb|EFL81982.1| integration host factor subunit alpha [Burkholderiales bacterium
           1_1_47]
 gi|329573910|gb|EGG55490.1| putative integration host factor, alpha subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 136

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 55/97 (56%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
             T+T+S L   I ++FGL ++     V   F+E  +  VRGE +K+S+F  F +KQK  
Sbjct: 28  GDTLTKSHLADVIYEQFGLPKRFCKEIVDLFFDEALECLVRGEELKLSNFGVFSIKQKSE 87

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           R GRN ++ +   I  R+VV F  S  L+K +++  +
Sbjct: 88  RPGRNPKSGESAIIKARQVVSFHPSGQLRKEVVEGRK 124


>gi|91787441|ref|YP_548393.1| histone-like protein DNA-binding protein [Polaromonas sp. JS666]
 gi|91696666|gb|ABE43495.1| HU family DNA-binding protein [Polaromonas sp. JS666]
          Length = 103

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 50/89 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R++L++SI+ E  LS+  + R +  L + I  +  +G+A+++  F TF   ++ +R G
Sbjct: 1  MNRAELIESIAAETDLSKAATGRVLDVLIDTIQKTVKKGDAVQLVGFGTFKSTKRSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +N +T + VKI    V  F A +  K  +
Sbjct: 61 KNPRTGEAVKIPATTVPKFVAGAKFKAVV 89


>gi|39938728|ref|NP_950494.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
 gi|39721837|dbj|BAD04327.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
          OY-M]
          Length = 94

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA---VRGEAIKISSFATFHVKQKGS 61
          + + + ++ ++++ G+S+K++ +F+      I  S       E + ++ F TF VK + +
Sbjct: 1  MNKLEFLRKLAEKNGVSQKEADKFLNNFIEVISQSLQEFKEDEKVTLTGFGTFEVKHRSA 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          R G+N +T + + I  ++V  FK S   K 
Sbjct: 61 REGKNPRTGKTIDIPAKKVPTFKFSKSFKD 90


>gi|157151424|ref|YP_001450003.1| DNA-binding histone-like protein HU [Streptococcus gordonii str.
          Challis substr. CH1]
 gi|262282714|ref|ZP_06060482.1| DNA-binding protein HU [Streptococcus sp. 2_1_36FAA]
 gi|157076218|gb|ABV10901.1| DNA-binding histone-like protein HU [Streptococcus gordonii str.
          Challis substr. CH1]
 gi|262262005|gb|EEY80703.1| DNA-binding protein HU [Streptococcus sp. 2_1_36FAA]
          Length = 91

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 49/89 (55%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  ++    L++KDS   V  +F  + +   +GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAAATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+KI   +V  FKA   LK  + 
Sbjct: 63 NPQTGKEIKIAASKVPAFKAGKALKDAVK 91


>gi|15888591|ref|NP_354272.1| histone-like protein [Agrobacterium tumefaciens str. C58]
 gi|15156311|gb|AAK87057.1| histone-like protein [Agrobacterium tumefaciens str. C58]
          Length = 91

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ GL++ D+   V  +F  +      G  I+++ F +F V ++ +  G
Sbjct: 1  MNKNELVSAVAEKAGLTKADAASAVDAVFETVQGELKNGGDIRLAGFGSFSVSRREASKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T  EV I  R V  F A   LK  + 
Sbjct: 61 RNPSTGAEVDIPARNVPKFSAGKGLKDAVN 90


>gi|315419711|gb|ADU15825.1| histone-like protein [Streptococcus parasanguinis]
          Length = 91

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + +   +GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E++I   +V  FKA   LK  I 
Sbjct: 63 NPQTGKEIEIAASKVPTFKAGKALKDVIK 91


>gi|329114632|ref|ZP_08243391.1| Integration host factor subunit beta [Acetobacter pomorum DM001]
 gi|326696112|gb|EGE47794.1| Integration host factor subunit beta [Acetobacter pomorum DM001]
          Length = 109

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 1/104 (0%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +TRS+L+ ++ ++   L  K++TR V  +F  I  S   G  +++  F  F VK++  RV
Sbjct: 6   MTRSELITALMQKNPHLQLKEATRLVNIVFGTITSSLAEGSRVELRGFGAFSVKERDPRV 65

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           GRN +T  +V++  + V  FK    L +R+   + G K ++  V
Sbjct: 66  GRNPKTGVQVQVGKKLVPFFKTGKELHQRLNKPVSGSKRSRSSV 109


>gi|325111062|ref|YP_004272130.1| histone family protein DNA-binding protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324971330|gb|ADY62108.1| histone family protein DNA-binding protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 136

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 2/101 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISSFATFHVKQKGSR 62
           +T+ ++VK+IS E GL++  +   V   F  I ++ V      I++ +F  F VK++ +R
Sbjct: 1   MTKKEIVKAISDELGLTQLQTKAIVQRTFESIIETLVHDPKHRIELRNFGVFEVKKRAAR 60

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
             RN +TN+ V ++ + VV FK    +++++   M+  +  
Sbjct: 61  KARNPRTNERVDVEEKYVVTFKPGKEMEEKVRQLMKAEEEK 101


>gi|288800481|ref|ZP_06405939.1| DNA-binding protein HU-beta [Prevotella sp. oral taxon 299 str.
          F0039]
 gi|288332694|gb|EFC71174.1| DNA-binding protein HU-beta [Prevotella sp. oral taxon 299 str.
          F0039]
          Length = 90

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+    LS+  + + +      I  + V G+ +++  F TF V ++ +R G
Sbjct: 1  MNKTELIERIAAGSDLSKAAAKKALDATTEAIKAALVAGDKVQLVGFGTFSVNERPARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T Q++ I  ++V  FKA + L   I 
Sbjct: 61 INPATKQKINIPAKKVAKFKAGAELNDAIK 90


>gi|322436189|ref|YP_004218401.1| histone family protein DNA-binding protein [Acidobacterium sp.
          MP5ACTX9]
 gi|321163916|gb|ADW69621.1| histone family protein DNA-binding protein [Acidobacterium sp.
          MP5ACTX9]
          Length = 93

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 45/89 (50%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M   + + DL++ + +  GL R  +   V  +F  +  S V GE I++  F  F VK + 
Sbjct: 1  MRHDLIKQDLIQRVVERTGLVRTKAEAAVDAIFESMKQSLVEGERIELRGFGVFTVKPRK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSIL 89
          + VGRN +T  EV I P + V FK    L
Sbjct: 61 TGVGRNPRTGAEVSIAPGKAVRFKPGKDL 89


>gi|149177307|ref|ZP_01855912.1| probable DNA-binding protein HU [Planctomyces maris DSM 8797]
 gi|148843832|gb|EDL58190.1| probable DNA-binding protein HU [Planctomyces maris DSM 8797]
          Length = 148

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 54/91 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ ++VK IS+E GL++  +   V   F+ I D+ V  + I++ +F  F VK++ +R  
Sbjct: 1  MTKKEIVKVISEEIGLTQLKTKEIVQKTFDAIVDTLVTDKRIELRNFGVFEVKKRAARKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T   V ++ + VV FK    ++KR+ +
Sbjct: 61 RNPRTGDRVDVEEKYVVTFKPGKEMEKRVRN 91


>gi|217973689|ref|YP_002358440.1| histone family protein DNA-binding protein [Shewanella baltica
          OS223]
 gi|217498824|gb|ACK47017.1| histone family protein DNA-binding protein [Shewanella baltica
          OS223]
          Length = 91

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L++ I+ E   S+  +   V  +  +I  +   GE I +  F TF ++   ++ G
Sbjct: 1  MNKAQLIQRIAAELNASQASTKPVVEQILQQIHVALSEGEKIFLPQFGTFELRYHVAKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++ID      FKAS+ LK++I 
Sbjct: 61 RNPQTGEAIEIDGYNQPSFKASTALKQQIN 90


>gi|158521048|ref|YP_001528918.1| histone family protein DNA-binding protein [Desulfococcus
          oleovorans Hxd3]
 gi|158509874|gb|ABW66841.1| histone family protein DNA-binding protein [Desulfococcus
          oleovorans Hxd3]
          Length = 94

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 53/93 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+S ++ S+ +E GL RK     V  L   I ++   GE + +S F  F VK+K +R 
Sbjct: 2  TLTKSRIIDSVQEETGLPRKRCDELVEELLEIIKETLANGENLMVSGFGKFCVKEKKARK 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN  T  ++ +D R+VV FK S  L+++I   
Sbjct: 62 GRNPATGDDLMLDERKVVTFKCSQGLREKINGS 94


>gi|323136622|ref|ZP_08071703.1| histone family protein DNA-binding protein [Methylocystis sp.
          ATCC 49242]
 gi|322397939|gb|EFY00460.1| histone family protein DNA-binding protein [Methylocystis sp.
          ATCC 49242]
          Length = 93

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 47/92 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV+ ++ E   S+  +   +  + + I  +  +G+ +++  F TF VK++ +  G
Sbjct: 1  MNKLELVEHVANETETSKAAAAAAIDAVIDGITKALKKGDEVRLVGFGTFSVKKRAAGKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN  T +E+KI   +   FK  + LK  +   
Sbjct: 61 RNPATGEEIKIPASKSARFKPGATLKAALNKA 92


>gi|269125485|ref|YP_003298855.1| histone family protein DNA-binding protein [Thermomonospora
          curvata DSM 43183]
 gi|268310443|gb|ACY96817.1| histone family protein DNA-binding protein [Thermomonospora
          curvata DSM 43183]
          Length = 159

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 44/91 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R++L+++++   G     + R V  +F  I D    GE + ++ F TF    + +R  
Sbjct: 1  MNRTELIEAVAALAGSDPAVARRHVDAVFETIMDRVTAGERVLVTGFGTFDKLSRPARTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + V++ P     F+A    K R+  
Sbjct: 61 RNPRTGEPVEVPPTETPRFRAGQTFKDRVAG 91


>gi|16330050|ref|NP_440778.1| DNA binding protein HU [Synechocystis sp. PCC 6803]
 gi|1652537|dbj|BAA17458.1| DNA binding protein HU [Synechocystis sp. PCC 6803]
          Length = 135

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 48/100 (48%), Gaps = 6/100 (6%)

Query: 5   ITRSDLVKSISKEF------GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
           + + +LV +++ +        +++K+    ++   + I +    GE + +  F +F  ++
Sbjct: 36  MNKGELVHAVTDKAKEQLGESITKKEVDAVISAAIDCIMEVVAEGEKVTLVGFGSFEARE 95

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           +  R GRN +T  ++ I   +V  F A  + K ++  + +
Sbjct: 96  RKEREGRNPKTGDKMLIPATKVPAFSAGKMFKDKVAPEKK 135


>gi|315419723|gb|ADU15831.1| histone-like protein [Streptococcus mitis]
          Length = 91

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 48/89 (53%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + D    GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVEAVFAAVADYLAAGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+ I   +V  FKA   LK  I 
Sbjct: 63 NPQTGKEITIAASKVPAFKAGKALKDVIK 91


>gi|283956256|ref|ZP_06373736.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791976|gb|EFC30765.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 1336]
          Length = 98

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 50/97 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D +  +++  GL++KD+T     + + I D   +G++I    F TF  +++ +R  
Sbjct: 1   MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           R   T + +K+   RV  FK    LK+ +      +K
Sbjct: 61  RVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASNKKK 97


>gi|27228588|ref|NP_758638.1| DNA binding protein [Pseudomonas resinovorans]
 gi|219857010|ref|YP_002474042.1| DNA binding protein [Pseudomonas sp. CA10]
 gi|26106176|dbj|BAC41616.1| DNA binding protein [Pseudomonas resinovorans]
 gi|219688938|dbj|BAH10029.1| DNA binding protein [Pseudomonas putida]
          Length = 91

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 40/91 (43%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +LVK+I+ E G S+      + +L + + +    G+ + +  F TF   ++  R G
Sbjct: 1  MNRQELVKAIADESGHSQSTVGEVLNSLISTVQNVVAGGDKVSLVGFGTFESTKQAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T   + I       F      K+R+  
Sbjct: 61 RNPSTGAPITIAASIKPKFTPGKSFKERVNQ 91


>gi|258542769|ref|YP_003188202.1| integration host factor DNA-binding subunit beta [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633847|dbj|BAH99822.1| integration host factor DNA-binding beta subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636906|dbj|BAI02875.1| integration host factor DNA-binding beta subunit [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639959|dbj|BAI05921.1| integration host factor DNA-binding beta subunit [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256643015|dbj|BAI08970.1| integration host factor DNA-binding beta subunit [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256646070|dbj|BAI12018.1| integration host factor DNA-binding beta subunit [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256649123|dbj|BAI15064.1| integration host factor DNA-binding beta subunit [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256652110|dbj|BAI18044.1| integration host factor DNA-binding beta subunit [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256655167|dbj|BAI21094.1| integration host factor DNA-binding beta subunit [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 104

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 1/104 (0%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +TRS+L+ ++ ++   L  K++TR V  +F  I  S   G  +++  F  F VK++  R+
Sbjct: 1   MTRSELITALMQKNPHLQLKEATRLVNIVFGTITSSLAEGSRVELRGFGAFSVKERDPRI 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           GRN +T  +VK+  + V  FK    L +R+   + G K ++  V
Sbjct: 61  GRNPKTGVQVKVGKKLVPFFKTGKELHQRLNKPVAGSKRSRSSV 104


>gi|117924544|ref|YP_865161.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
 gi|117608300|gb|ABK43755.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
          Length = 91

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+ +I+ + GL+++ +   V  +F+E+  +  +GE +++  F  F  + +  R  
Sbjct: 1  MTKSELILTIAAQKGLTKQYAAMVVDLVFSELGKALAKGERVELRGFGVFEPRARKPRAA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T ++V ++ +  V FK    ++KR+
Sbjct: 61 RNPKTGEKVAVESKTAVHFKPGLDMRKRV 89


>gi|148653384|ref|YP_001280477.1| histone family protein DNA-binding protein [Psychrobacter sp.
          PRwf-1]
 gi|148572468|gb|ABQ94527.1| histone family protein DNA-binding protein [Psychrobacter sp.
          PRwf-1]
          Length = 99

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 1  MSKTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          M++ I +SDL++ ++     ++  D    V  +   + +  +    I++  F TF +  +
Sbjct: 1  MTEVINKSDLIQDVAARCDYMADSDVDNAVREILELLSEKLISNNRIEVRGFGTFCLHHR 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           +R GRN +T + V +  + +  FK    L++ + 
Sbjct: 61 EARQGRNPKTGEMVLVPQKAIPHFKPGKALREGVN 95


>gi|94968214|ref|YP_590262.1| histone-like DNA-binding protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550264|gb|ABF40188.1| histone-like DNA-binding protein [Candidatus Koribacter versatilis
           Ellin345]
          Length = 107

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 48/88 (54%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S T+ + D++  +  + G+++  +   V T+F  +  +  RG+ I++  F  F+V+ + +
Sbjct: 16  SPTVIKLDIINEVVNKTGVTKTKAELAVETVFESMKKALSRGDRIELRGFGVFNVRPRKT 75

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSIL 89
            +GRN +T  EV I P + V FK    L
Sbjct: 76  GIGRNPRTGAEVNIPPGKAVRFKPGKEL 103


>gi|254788366|ref|YP_003075795.1| DNA-binding protein HU [Teredinibacter turnerae T7901]
 gi|237686942|gb|ACR14206.1| DNA-binding protein HU [Teredinibacter turnerae T7901]
          Length = 93

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 45/87 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLVK +     L+R  +   V  +  ++ ++  RGE +++    +F V+ + +  G
Sbjct: 1  MRKTDLVKQLCTLGELNRVQADDVVEAIVEQVTNALARGERVQLPGLGSFSVRHRNAHTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
           N QT + ++I  +  + FKA   L+ 
Sbjct: 61 INPQTGEALRIAAKNQIFFKAGKRLRD 87


>gi|256394110|ref|YP_003115674.1| histone family protein DNA-binding protein [Catenulispora
           acidiphila DSM 44928]
 gi|256360336|gb|ACU73833.1| histone family protein DNA-binding protein [Catenulispora
           acidiphila DSM 44928]
          Length = 167

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 49/106 (46%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++DL   ++++   +  D+ ++V  +F+ I      GE ++I  F TF   Q+ +R+G
Sbjct: 2   VNKADLAAEVAEQMSGAEPDARQYVDAVFDVIMRHVAAGERVQILGFGTFDSVQRAARLG 61

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSP 110
           RN QT   +++       F A    + R+ +          DV  P
Sbjct: 62  RNPQTGAAIQVPAGTSPRFHAGQTFRTRVAEASAVPAEASQDVAKP 107


>gi|170719347|ref|YP_001747035.1| histone family protein DNA-binding protein [Pseudomonas putida
           W619]
 gi|169757350|gb|ACA70666.1| histone family protein DNA-binding protein [Pseudomonas putida
           W619]
          Length = 99

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 50/100 (50%), Gaps = 1/100 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + + +L   I+++  L+++ + + +  + + I  +  + + + +  F TF  + +G+R G
Sbjct: 1   MRKPELAAVIAEKADLTKEKANQVLNAILDSITGALDK-DTVTLVGFGTFEKRHRGARTG 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           +N QT + VKI     V FK    L++ +    +  K  K
Sbjct: 60  KNPQTGEPVKIKASNTVAFKPGKNLRESVNVPAKPAKKAK 99


>gi|284006424|emb|CBA71660.1| DNA-binding protein HU-beta [Arsenophonus nasoniae]
          Length = 100

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 48/92 (52%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +LV+ I+KE   ++  +   +      +  +  +G+ +++  F TF VKQ+ +R GRN
Sbjct: 8  KKELVEKIAKESKAAKSVAESVLNAFLKTVSQTLKKGDKVQLIGFGTFEVKQRAARNGRN 67

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           +T + +KI   +V  FKA   LK  +    +
Sbjct: 68 PKTGKVIKIAAAKVPSFKAGQGLKDTVNGHKK 99


>gi|126173989|ref|YP_001050138.1| histone family protein DNA-binding protein [Shewanella baltica
          OS155]
 gi|153000280|ref|YP_001365961.1| histone family protein DNA-binding protein [Shewanella baltica
          OS185]
 gi|160874914|ref|YP_001554230.1| histone family protein DNA-binding protein [Shewanella baltica
          OS195]
 gi|125997194|gb|ABN61269.1| histone family protein DNA-binding protein [Shewanella baltica
          OS155]
 gi|151364898|gb|ABS07898.1| histone family protein DNA-binding protein [Shewanella baltica
          OS185]
 gi|160860436|gb|ABX48970.1| histone family protein DNA-binding protein [Shewanella baltica
          OS195]
 gi|315267151|gb|ADT94004.1| histone family protein DNA-binding protein [Shewanella baltica
          OS678]
          Length = 91

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L++ I+ E   S+  +   V  +  +I  +   GE I +  F TF ++   ++ G
Sbjct: 1  MNKAQLIQRIAAELNASQASTKPVVEQILQQIHVALSEGEKIFLPQFGTFELRYHVAKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++ID      FKAS+ LK++I 
Sbjct: 61 RNPQTGEAIEIDGYNQPSFKASTALKQQIN 90


>gi|94495282|ref|ZP_01301863.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58]
 gi|94425548|gb|EAT10568.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58]
          Length = 91

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  SDL ++++ E  +++ D+ + V  +F  I D+A +GE I ++ F  F VK + +R G
Sbjct: 1  MNNSDLAEALAAEHDVTKADARKLVDAVFANIADAAAKGEEISLNGFGKFKVKDQPAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T+  ++I   + + F  +  +K ++  
Sbjct: 61 RNPSTSATIQIAASKKLAFTPAKAVKDQLNG 91


>gi|117926190|ref|YP_866807.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
 gi|117609946|gb|ABK45401.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
          Length = 91

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+ +I+ + GL+++ +   V  +FNEI  +  +GE +++  F  F  + +  R  
Sbjct: 1  MTKSELILTIAAQKGLTKQAAAMVVDMVFNEIGKAMAKGERVELRGFGVFEPRARKPRAA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T ++V ++ +  V FK    ++KR+
Sbjct: 61 RNPKTGEKVAVESKTAVHFKPGLDMRKRV 89


>gi|46578812|ref|YP_009620.1| DNA-binding protein HU [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|120603581|ref|YP_967981.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris DP4]
 gi|46448224|gb|AAS94879.1| DNA-binding protein HU [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|120563810|gb|ABM29554.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris DP4]
 gi|311232675|gb|ADP85529.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris RCH1]
          Length = 95

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 54/95 (56%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSKT+T++++V +I ++   +R +    V +L   +  +  +  A+ IS F  F    K 
Sbjct: 1  MSKTLTKAEIVDAIYEKTDRNRAEVKGVVESLLGIMKQAIKKDHALLISGFGKFEAYDKK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +R GRN QT++ + + PR+VVVF+ S   +  + +
Sbjct: 61 ARKGRNPQTDETITLPPRKVVVFRLSRKFRAELNE 95


>gi|325972610|ref|YP_004248801.1| histone family protein DNA-binding protein [Spirochaeta sp. Buddy]
 gi|324027848|gb|ADY14607.1| histone family protein DNA-binding protein [Spirochaeta sp. Buddy]
          Length = 108

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 1/106 (0%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
              +T++ +++S+ ++ GL+R D  + +   F E+ D     + I++  F TF V+ +  
Sbjct: 3   GPKLTKAAIIESLHEKHGLNRADIHQIIDEFFEEVKDGLKNDQVIELRGFGTFEVRTRKG 62

Query: 62  R-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           R   RN +T   V ++   V +F+    LK  + +    +  N++D
Sbjct: 63  REKARNPKTGAIVAVETHGVAIFRPGKELKDFVWELRDNKPVNEND 108


>gi|315419727|gb|ADU15833.1| histone-like protein [Streptococcus parasanguinis]
          Length = 91

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + +   +GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+KI   +V  FKA   LK  + 
Sbjct: 63 NPQTGKEIKIAASKVPAFKAGKALKDVVK 91


>gi|303258444|ref|ZP_07344447.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
 gi|302858890|gb|EFL81978.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
          Length = 92

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 41/90 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++  G S+ D    +  L  +I  +   G+ I +  F TF   ++ +R G
Sbjct: 1  MNKTELIAAVAEASGKSKADVKDVLDALTAQIVKTVKAGDEISLVGFGTFKSAKREARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T   ++I       F A    K  + 
Sbjct: 61 RNPATGATIQIPASVQPKFVAGKQFKDALN 90


>gi|238653880|emb|CAV30823.1| Integration host factor, alpha subunit [magnetite-containing
          magnetic vibrio]
          Length = 104

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/93 (43%), Positives = 57/93 (61%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +K +TR  L ++I KE GLSR +S   + T    I +S V G+ +KISSF  F V+ K  
Sbjct: 3  NKCLTRLQLSEAIYKEVGLSRTESAEILQTALKIISESLVSGDYVKISSFGCFSVRAKKK 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          R+GRN +T ++  I PR ++ F+ SS LK RI 
Sbjct: 63 RMGRNPKTGEQAIILPRNILTFRPSSTLKLRIN 95


>gi|315419713|gb|ADU15826.1| histone-like protein [Streptococcus oralis]
 gi|315419715|gb|ADU15827.1| histone-like protein [Streptococcus oralis]
 gi|315419721|gb|ADU15830.1| histone-like protein [Streptococcus oralis]
          Length = 91

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 49/89 (55%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + +    GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+KI   +V  FKA   LK  I 
Sbjct: 63 NPQTGKEIKIAASKVPAFKAGKALKDVIK 91


>gi|283769425|ref|ZP_06342323.1| DNA-binding protein HU [Bulleidia extructa W1219]
 gi|283103950|gb|EFC05335.1| DNA-binding protein HU [Bulleidia extructa W1219]
          Length = 96

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 54/94 (57%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T+  L + I+ E+ +S+KD+   V  +F++I  +  +GE + I+ F  F V +K 
Sbjct: 1  MAEQVTKKTLAEGIAAEYEVSKKDANELVNFVFDQITTAIKKGEEVSINGFGKFVVVEKA 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +R G N  T +++KI   +   FKAS  LK  + 
Sbjct: 61 AREGLNPATGEKIKIKASKAPKFKASKTLKDLVN 94


>gi|332187527|ref|ZP_08389264.1| bacterial DNA-binding family protein [Sphingomonas sp. S17]
 gi|332012456|gb|EGI54524.1| bacterial DNA-binding family protein [Sphingomonas sp. S17]
          Length = 94

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+LV+ I +   GL+ ++    VT  F+EI         +++  F  F  + + +R 
Sbjct: 1  MIRSELVQKIGQHNPGLNPREIELIVTIFFDEITKRLAANGRVELRGFGAFSTRARDART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T + V +  +RV  FK    ++ R+ 
Sbjct: 61 GRNPRTGETVDVVAKRVPYFKPGKEMRARLN 91


>gi|33152425|ref|NP_873778.1| integration host factor, beta subunit [Haemophilus ducreyi
          35000HP]
 gi|71152154|sp|Q7VLR8|IHFB_HAEDU RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|33148648|gb|AAP96167.1| integration host factor, beta subunit [Haemophilus ducreyi
          35000HP]
          Length = 93

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++  I+    L  K     V  +   I  +  + + ++I  F +F +  +  R+
Sbjct: 1  MTKSELIEKLIALNPSLPEKAVEDGVKDILENIMLTLEQAKRVEIRGFGSFSLHYRQPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   VK+D + V  FKA   LK+R+
Sbjct: 61 GRNPKTGASVKLDAKYVPHFKAGKDLKERV 90


>gi|262370394|ref|ZP_06063720.1| integration host factor beta subunit [Acinetobacter johnsonii
          SH046]
 gi|262314736|gb|EEY95777.1| integration host factor beta subunit [Acinetobacter johnsonii
          SH046]
          Length = 101

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 1/95 (1%)

Query: 2  SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          ++ + +SDL++ IS K   L+       V  + +++  S      I+I  F +F +  + 
Sbjct: 3  TEALNKSDLIERISLKNPHLAEPLVEEAVKIMIDQMIASLSSDNRIEIRGFGSFALHHRE 62

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RVGRN +T + V++  + V  FK    L+  + +
Sbjct: 63 PRVGRNPKTGKSVEVAAKAVPHFKPGKALRDAVNE 97


>gi|218679781|ref|ZP_03527678.1| integration host factor subunit beta [Rhizobium etli CIAT 894]
          Length = 85

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 38/76 (50%)

Query: 19 GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPR 78
           L  +D    V  + +EI D+   G  +++  F  F VK + SR GRN +T   V ++ +
Sbjct: 2  HLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRSGRNPRTGDTVFVEEK 61

Query: 79 RVVVFKASSILKKRIM 94
           V  FK    L++R+ 
Sbjct: 62 WVPFFKTGKELRERLN 77


>gi|116624250|ref|YP_826406.1| histone family protein DNA-binding protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116227412|gb|ABJ86121.1| histone family protein DNA-binding protein [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 108

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 45/85 (52%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + + D++  +    G+++  +   V T+F  +  +  +G+ I++  F  F+VK + + +G
Sbjct: 20  LIKLDIINEVVNRTGITKTKAEMAVETVFESMKKALEQGDRIELRGFGVFNVKPRKTGIG 79

Query: 65  RNLQTNQEVKIDPRRVVVFKASSIL 89
           RN +T  EV I P + V FK    L
Sbjct: 80  RNPRTGAEVSIPPGKAVRFKPGKEL 104


>gi|239907249|ref|YP_002953990.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
          RS-1]
 gi|283850195|ref|ZP_06367484.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          FW1012B]
 gi|303247218|ref|ZP_07333492.1| histone family protein DNA-binding protein [Desulfovibrio
          fructosovorans JJ]
 gi|239797115|dbj|BAH76104.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
          RS-1]
 gi|283574221|gb|EFC22192.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          FW1012B]
 gi|302491377|gb|EFL51265.1| histone family protein DNA-binding protein [Desulfovibrio
          fructosovorans JJ]
          Length = 91

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K++++   L   ++   V    + +  + +  + ++I  F +F +K      G
Sbjct: 1  MNKSELIKTLAETKDLHIDEAADIVNAFVDSVKQALINEDRVEIRGFGSFKIKGYKGYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN ++   V + P+++  F+    LK+ +  
Sbjct: 61 RNPKSGDVVTVAPKKLPFFRPGKELKEYLNK 91


>gi|319776106|ref|YP_004138594.1| Integration host factor beta-subunit [Haemophilus influenzae
          F3047]
 gi|317450697|emb|CBY86917.1| Integration host factor beta-subunit [Haemophilus influenzae
          F3047]
          Length = 94

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + +K+  L  K+    V  +   I  S  +G+ +++  F +F +  +  R+
Sbjct: 1  MTKSELMEKLSAKQPTLPAKEIENMVKDILEFISQSLEKGDRVEVRGFGSFSLHHRQPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V +  + V  FKA   LK  +
Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKALV 90


>gi|57237741|ref|YP_178989.1| DNA-binding protein HU [Campylobacter jejuni RM1221]
 gi|121613433|ref|YP_001000587.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 81-176]
 gi|148926594|ref|ZP_01810276.1| DNA-binding protein HU like protein [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|153951444|ref|YP_001398017.1| DNA-binding protein HU [Campylobacter jejuni subsp. doylei 269.97]
 gi|157415169|ref|YP_001482425.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 81116]
 gi|167005518|ref|ZP_02271276.1| DNA-binding protein HU-like protein [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|205356397|ref|ZP_03223162.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni CG8421]
 gi|218562532|ref|YP_002344311.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|9789717|sp|Q46121|DBH_CAMJE RecName: Full=DNA-binding protein HU; AltName: Full=HCj
 gi|81675587|sp|Q5HUP6|DBH_CAMJR RecName: Full=DNA-binding protein HU
 gi|409577|gb|AAA60954.1| hupB [Campylobacter jejuni]
 gi|57166545|gb|AAW35324.1| DNA-binding protein HU [Campylobacter jejuni RM1221]
 gi|58979331|gb|AAW83330.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979333|gb|AAW83331.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979337|gb|AAW83333.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979341|gb|AAW83335.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979343|gb|AAW83336.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979345|gb|AAW83337.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979359|gb|AAW83344.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979361|gb|AAW83345.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979369|gb|AAW83349.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979371|gb|AAW83350.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979375|gb|AAW83352.1| DNA-binding protein HU [Campylobacter jejuni subsp. doylei]
 gi|58979405|gb|AAW83367.1| DNA-binding protein HU [Campylobacter jejuni subsp. doylei]
 gi|58979411|gb|AAW83370.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979415|gb|AAW83372.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979417|gb|AAW83373.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979419|gb|AAW83374.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979435|gb|AAW83382.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979439|gb|AAW83384.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979441|gb|AAW83385.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979443|gb|AAW83386.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979445|gb|AAW83387.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979447|gb|AAW83388.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979449|gb|AAW83389.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979451|gb|AAW83390.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979453|gb|AAW83391.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979455|gb|AAW83392.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979457|gb|AAW83393.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979459|gb|AAW83394.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979461|gb|AAW83395.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|58979485|gb|AAW83407.1| DNA-binding protein HU [Campylobacter jejuni]
 gi|112360238|emb|CAL35033.1| DNA-binding protein HU homolog [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|121504251|gb|ABM55258.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 81-176]
 gi|145845288|gb|EDK22382.1| DNA-binding protein HU like protein [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|152938890|gb|ABS43631.1| DNA-binding protein HU [Campylobacter jejuni subsp. doylei 269.97]
 gi|157386133|gb|ABV52448.1| DNA-binding protein HU-like protein [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|205345782|gb|EDZ32420.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni CG8421]
 gi|284926146|gb|ADC28498.1| DNA-binding protein HU-like protein [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|307747812|gb|ADN91082.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni M1]
 gi|315058353|gb|ADT72682.1| DNA-binding protein HU-beta [Campylobacter jejuni subsp. jejuni S3]
 gi|315927538|gb|EFV06871.1| DNA-binding protein HU 1 [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315929859|gb|EFV09022.1| DNA-binding protein [Campylobacter jejuni subsp. jejuni 305]
 gi|315932606|gb|EFV11537.1| DNA-binding protein HU 1 [Campylobacter jejuni subsp. jejuni 327]
          Length = 98

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 50/97 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D +  +++  GL++KD+T     + + I D   +G++I    F TF  +++ +R  
Sbjct: 1   MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           R   T + +K+   RV  FK    LK+ +      +K
Sbjct: 61  RVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKK 97


>gi|323137325|ref|ZP_08072403.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC
           49242]
 gi|322397312|gb|EFX99835.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC
           49242]
          Length = 157

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 1/109 (0%)

Query: 4   TITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            +TR D+  +I +   G+SR+++ R V  + +E+  + V GE++K+  F +F V++K  R
Sbjct: 26  ALTRQDIALAIHRRIEGVSRREAKRIVDCVIDEMVSTLVSGESLKLHDFGSFLVREKEER 85

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111
            GRN +T   V I+ RRVVVFKAS  +K  +  +    +    +   PS
Sbjct: 86  SGRNPRTGAPVPIEARRVVVFKASPNMKATVNGEPPAPRDKTPEKRRPS 134


>gi|238899357|ref|YP_002925039.1| DNA-binding protein [Candidatus Hamiltonella defensa 5AT
          (Acyrthosiphon pisum)]
 gi|229467118|gb|ACQ68891.1| DNA-binding protein [Candidatus Hamiltonella defensa 5AT
          (Acyrthosiphon pisum)]
          Length = 113

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ +  + GL++  ST  VT +F+ I DS  + E ++I  FATF V  +  R+ 
Sbjct: 1  MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIDSLGKKEPVQIIRFATFKVSHRSERMS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R+ +T +++K   R V VF A   LK  +
Sbjct: 61 RHPKTGEKIKTPAREVPVFSAGKRLKASV 89


>gi|319942323|ref|ZP_08016638.1| integration host factor subunit alpha [Sutterella wadsworthensis
           3_1_45B]
 gi|319804196|gb|EFW01096.1| integration host factor subunit alpha [Sutterella wadsworthensis
           3_1_45B]
          Length = 114

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 4   TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           T+ ++ L +++     GL R  +   V T F  + +   +G+ +KI     F V+ K +R
Sbjct: 14  TLNKASLAEALVDHVAGLDRPHAKLIVETFFELVAEHLEKGDTVKIPGLGNFSVRDKVAR 73

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
            GRNL+T + V I  RRVV F  S  L  R+  ++
Sbjct: 74  PGRNLKTGETVTITERRVVTFHPSGTLNSRVTTNL 108


>gi|304411460|ref|ZP_07393074.1| histone family protein DNA-binding protein [Shewanella baltica
          OS183]
 gi|307305218|ref|ZP_07584966.1| histone family protein DNA-binding protein [Shewanella baltica
          BA175]
 gi|304350315|gb|EFM14719.1| histone family protein DNA-binding protein [Shewanella baltica
          OS183]
 gi|306911521|gb|EFN41946.1| histone family protein DNA-binding protein [Shewanella baltica
          BA175]
          Length = 91

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L++ I+ E   S+  +   V  +  +I  +   GE I +  F TF ++   ++ G
Sbjct: 1  MNKAQLIQRIAAELNASQSSTKPVVEQILQQIHVALSEGEKIFLPQFGTFELRYHVAKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++ID      FKAS+ LK++I 
Sbjct: 61 RNPQTGEAIEIDGYNQPSFKASTALKQQIN 90


>gi|118580329|ref|YP_901579.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
 gi|118503039|gb|ABK99521.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
          Length = 88

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 40/86 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++ V +I+ E  + +  +   V        D    G+ I    F TF V ++ +R G
Sbjct: 1  MTKAEFVAAIAAELDVPKNVAAETVEAFLKVTTDLLKAGDKITFPGFGTFGVSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN QT  E++I   +   F A   LK
Sbjct: 61 RNPQTGAEIQIAASKSGKFTAGKNLK 86


>gi|327402190|ref|YP_004343028.1| histone family protein DNA-binding protein [Fluviicola taffensis
          DSM 16823]
 gi|327317698|gb|AEA42190.1| histone family protein DNA-binding protein [Fluviicola taffensis
          DSM 16823]
          Length = 96

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 48/93 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I++E GL R ++ + V      I  S  +G+ + +  F +F VK++  + G
Sbjct: 1  MTKADIVAEIAEETGLERNEAQKAVEAFMTSIKTSLTKGQNVYLRGFGSFIVKERAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          RN+  N  + I    +  FK +    + + + +
Sbjct: 61 RNISKNTTIIIPAHNIPSFKPAKTFVEEVKNRV 93


>gi|150007792|ref|YP_001302535.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC
          8503]
 gi|255013499|ref|ZP_05285625.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_7]
 gi|256840058|ref|ZP_05545567.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
 gi|262381699|ref|ZP_06074837.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B]
 gi|298376838|ref|ZP_06986793.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
 gi|301310172|ref|ZP_07216111.1| DNA-binding protein HU [Bacteroides sp. 20_3]
 gi|149936216|gb|ABR42913.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC
          8503]
 gi|256738988|gb|EEU52313.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
 gi|262296876|gb|EEY84806.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B]
 gi|298266716|gb|EFI08374.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
 gi|300831746|gb|EFK62377.1| DNA-binding protein HU [Bacteroides sp. 20_3]
          Length = 94

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 45/94 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+++++ + GL ++++ + +      + +     E I +  F T   + +  R+ 
Sbjct: 1  MNKAELIEALADKTGLQKQEAKKVLDAYIEIVTERMSENEEIVLVGFGTLIPRPQTQRLA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T   V I  R  V FK    L + +   ++
Sbjct: 61 RNPKTGTPVMIPARTTVKFKPGKFLLEAMNAHLK 94


>gi|86605642|ref|YP_474405.1| DNA-binding protein HU [Synechococcus sp. JA-3-3Ab]
 gi|86554184|gb|ABC99142.1| DNA-binding protein HU [Synechococcus sp. JA-3-3Ab]
          Length = 105

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 46/101 (45%), Gaps = 7/101 (6%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV----RGE---AIKISSFATFHVK 57
           + +++LV +++    +++K++   +T     I +        GE    + +  F +F  +
Sbjct: 1   MNKAELVDAVAHRANVTKKEAEAVLTAALEIIVEEVASRDENGEPKGKVTLVGFGSFEAR 60

Query: 58  QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           ++  R GRN +TN+++ I    V  F A    +  +    +
Sbjct: 61  KRKQREGRNPKTNEKMVIPASIVPTFTAGKTFRDAVAGGHK 101


>gi|269127666|ref|YP_003301036.1| histone family protein DNA-binding protein [Thermomonospora
          curvata DSM 43183]
 gi|268312624|gb|ACY98998.1| histone family protein DNA-binding protein [Thermomonospora
          curvata DSM 43183]
          Length = 92

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +IS+  G S+K +   V  +   I ++  +G+ + I+ F +F   ++ +R  
Sbjct: 1  MNKRELVDAISERLG-SKKAAAEAVDAILETIQNAVAKGDKVAITGFGSFEKAERPARTA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T + +++    V  F+A S  K  +  
Sbjct: 60 RNPATGKTIEVPATSVPKFRAGSDFKNLVAG 90


>gi|118581076|ref|YP_902326.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
 gi|118503786|gb|ABL00269.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
          Length = 91

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 44/87 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  +++   +++  + + +      + ++   GE + ++ F TF    + +R+G
Sbjct: 1  MTKAELVARMAESGDITKAAAEKALGGFIEAVTEAIKAGEKVTLTGFGTFSAVTRAARIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN  T QE++I  +    F     LK 
Sbjct: 61 RNPATGQELQIAAKTSAKFSPGKELKD 87


>gi|118580308|ref|YP_901558.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
 gi|118503018|gb|ABK99500.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
          Length = 90

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +TRS+LV+ +S    +S   + + V  +F  + D+ + G+ I+I  F +F  +    R G
Sbjct: 1  MTRSELVEQLSVRKDISIGTAEKIVQEIFGSMTDTLIAGDRIEIRGFGSFENRDYDERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN ++  EV +  ++   FK    LK+RI+
Sbjct: 61 RNPKSGIEVSVAAKKRPFFKVGKDLKERIL 90


>gi|313835866|gb|EFS73580.1| DNA-binding protein HU [Propionibacterium acnes HL037PA2]
 gi|314927134|gb|EFS90965.1| DNA-binding protein HU [Propionibacterium acnes HL044PA1]
 gi|314970776|gb|EFT14874.1| DNA-binding protein HU [Propionibacterium acnes HL037PA3]
 gi|328906040|gb|EGG25815.1| DNA-binding protein HU [Propionibacterium sp. P08]
          Length = 91

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 49/91 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+K+++K+  L+   +   V  L + I  +   GE +++    T    ++ +R G
Sbjct: 1  MTKSELIKAVAKQASLTEAQTNEAVKALTDVITAALAEGEKVQLPGLFTAEAVERPARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + + I   + V   ASS LKK + D
Sbjct: 61 RNPRTGESMTIPAHKAVKISASSTLKKAVAD 91


>gi|58979591|gb|AAW83460.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979595|gb|AAW83462.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979599|gb|AAW83464.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979613|gb|AAW83471.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979615|gb|AAW83472.1| DNA-binding protein HU [Campylobacter upsaliensis]
          Length = 98

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 44/85 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+      + + I +   +G++I    F TF   ++ +R  
Sbjct: 1  MTKADFISQVAQNAGLTKKDAGAATDAVISTITEVLAKGDSISFIGFGTFSTTERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          R   T + +K+   RVV FK    L
Sbjct: 61 RVPSTGKTIKVPATRVVKFKVGKNL 85


>gi|85860306|ref|YP_462508.1| DNA-binding protein HU [Syntrophus aciditrophicus SB]
 gi|85723397|gb|ABC78340.1| DNA-binding protein HU [Syntrophus aciditrophicus SB]
          Length = 91

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLV++++K  G  +K +   V  + + + ++  +GE++ +  F TF V ++ +R G
Sbjct: 1  MNKGDLVEAVTKVVG-KKKLAQETVGCVLDTMTEALKKGESVTLIGFGTFKVMKRSARTG 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + +KI  ++V  F A   LK+ +  
Sbjct: 60 RNPQTGKPIKIKAKKVPKFTAGKKLKEAVAK 90


>gi|21672575|ref|NP_660642.1| integration host factor beta subunit [Buchnera aphidicola str. Sg
          (Schizaphis graminum)]
 gi|2495248|sp|Q44654|IHFB_BUCAP RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|1448955|gb|AAC05430.1| integration host factor beta subunit [Buchnera aphidicola]
 gi|21623203|gb|AAM67853.1| integration host factor beta subunit [Buchnera aphidicola str. Sg
          (Schizaphis graminum)]
          Length = 93

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L + I++ +  +S K     V  +   I  S  +G+ I+I  F TF +  + SR+
Sbjct: 1  MTKSELFERIAERKAHISNKIIECAVKEMLEYISISLSKGKRIEIRGFGTFSLHYRSSRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +++K++ R +  FK    L+ R  
Sbjct: 61 GRNPKTGKKIKLNERYIPYFKPGKQLRDRAN 91


>gi|50365017|ref|YP_053442.1| histone-like DNA-binding protein [Mesoplasma florum L1]
 gi|50363573|gb|AAT75558.1| predicted histone-like DNA-binding protein [Mesoplasma florum L1]
          Length = 90

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ DL+  I     +S+ +    V +LF+ I +    G  + I+ F  F + ++ +R G
Sbjct: 1  MTKKDLINEIIANENISKVECEAVVNSLFDLIIEELSSGNEVSIAGFGKFAISERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T  ++ I   +   FKA+  LK+++ 
Sbjct: 61 INPSTGDKISIAASKSAKFKAAKQLKEKLN 90


>gi|17547240|ref|NP_520642.1| DNA-binding protein HU-beta [Ralstonia solanacearum GMI1000]
 gi|187929862|ref|YP_001900349.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12J]
 gi|207725148|ref|YP_002255545.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum
          MolK2]
 gi|207742516|ref|YP_002258908.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum
          IPO1609]
 gi|241663971|ref|YP_002982331.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12D]
 gi|300690608|ref|YP_003751603.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Ralstonia
          solanacearum PSI07]
 gi|300703213|ref|YP_003744815.1| DNA-binding protein hu-beta, ns1 (hu-1), plays a role in DNA
          replication and in rpo translation [Ralstonia
          solanacearum CFBP2957]
 gi|309781438|ref|ZP_07676174.1| DNA-binding protein HU [Ralstonia sp. 5_7_47FAA]
 gi|17429542|emb|CAD16228.1| probable dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia
          solanacearum GMI1000]
 gi|187726752|gb|ACD27917.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12J]
 gi|206590380|emb|CAQ37341.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum
          MolK2]
 gi|206593908|emb|CAQ60835.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum
          IPO1609]
 gi|240865998|gb|ACS63659.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12D]
 gi|299065882|emb|CBJ37061.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Ralstonia
          solanacearum CMR15]
 gi|299070876|emb|CBJ42178.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Ralstonia
          solanacearum CFBP2957]
 gi|299077668|emb|CBJ50304.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Ralstonia
          solanacearum PSI07]
 gi|308919851|gb|EFP65512.1| DNA-binding protein HU [Ralstonia sp. 5_7_47FAA]
          Length = 94

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+S+LV +I+K+  LS   + R + +    I  +  +G  I +  F +F   ++ +R GR
Sbjct: 3  TKSELVAAIAKDAELSNAAAERALNSALENIKKTVAKGGTITLVGFGSFSSGKRAARTGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N +T + +KI   + V F A    K  +  
Sbjct: 63 NPRTGEAIKIPATKTVKFTAGKGFKDAVNK 92


>gi|256833715|ref|YP_003162442.1| histone family protein DNA-binding protein [Jonesia denitrificans
          DSM 20603]
 gi|256687246|gb|ACV10139.1| histone family protein DNA-binding protein [Jonesia denitrificans
          DSM 20603]
          Length = 93

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + RS+LV +I+ + GL++ D+   ++ L + + +    GEA+KI+   +    ++ +R 
Sbjct: 2  ALNRSELVSAIAAKSGLTKTDADAALSALQDVLVEQLSAGEAVKITGLLSVERVERKART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E++I     V   A SILKK +
Sbjct: 62 GRNPRTGEEIEIPAGYGVKISAGSILKKAV 91


>gi|323343529|ref|ZP_08083756.1| DNA-binding protein HU [Prevotella oralis ATCC 33269]
 gi|323095348|gb|EFZ37922.1| DNA-binding protein HU [Prevotella oralis ATCC 33269]
          Length = 114

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +K + +++L++ I+   GLS+  + + +      I  + V G+ +++  F TF V ++ +
Sbjct: 21  NKIMNKTELIEKIAAGSGLSKAAAKKALDATTEAIKAALVAGDKVQLIGFGTFSVTERPA 80

Query: 62  RVGRNL-QTNQEVKIDPRRVVVFKASSILKKRIM 94
           RVG N  +  Q++ I  ++V  FK  + L   + 
Sbjct: 81  RVGVNPAKKGQKINIPAKKVAKFKVGAELADAVK 114


>gi|257091775|ref|YP_003165416.1| histone family protein DNA-binding protein [Candidatus
          Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044299|gb|ACV33487.1| histone family protein DNA-binding protein [Candidatus
          Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 94

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    LS+  + + +  +   I DS  +GE + +  F +F    + SR G
Sbjct: 1  MNKSELIDAIAARSELSKAAAAKALDAVIETIVDSVAQGETVTLVGFGSFKASGRASREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +N +T +++ I    V  F A +  K R+  
Sbjct: 61 KNPKTGEKIHIPETTVPKFSAGATFKARVAG 91


>gi|326386334|ref|ZP_08207958.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens
          DSM 19370]
 gi|326209559|gb|EGD60352.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens
          DSM 19370]
          Length = 93

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKD-STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L++ ++K+    R D   R V   F+EI      G  +++  F  F  +++ +R 
Sbjct: 1  MIRSELLQVLAKQSPDMRSDEIERVVDVFFDEIGKRLAEGGRVELRGFGAFSTRERDARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V +  +RV  FK    ++ R+  +
Sbjct: 61 GRNPRTGEAVDVPGKRVPYFKPGKEMRVRLNAE 93


>gi|189182932|ref|YP_001936717.1| DNA-binding protein HU [Orientia tsutsugamushi str. Ikeda]
 gi|189179703|dbj|BAG39483.1| DNA-binding protein HU [Orientia tsutsugamushi str. Ikeda]
          Length = 102

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 3   KTITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + + +++ V  I K    +++ D  R +  +   +  +   G  I I  F +F V+ + +
Sbjct: 9   EALNKAEFVNFIHKNNTNMTKADIERALNLILRGVEKAIENGHDINIVGFGSFCVRFRAA 68

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R G N +T  ++ I     VVFK    LK    +
Sbjct: 69  RDGHNPKTGAKIIIPESYQVVFKPGKTLKDACNN 102


>gi|189426728|ref|YP_001953904.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
 gi|189422987|gb|ACD97384.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
          Length = 93

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 57/92 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++ L++ ++++  ++ KD+   V  L   I  +   GE++KI+ F  F VK+K +R 
Sbjct: 2  ALTKNKLIQLVAEQQHITLKDAALLVEELITLIKATLESGESLKIAKFGLFEVKEKHARR 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN QT + + I+PR+V+ FK S +L++ I  
Sbjct: 62 GRNPQTGEAITIEPRKVISFKPSVLLRQAINQ 93


>gi|33602439|ref|NP_889999.1| integration host factor beta-subunit [Bordetella bronchiseptica
           RB50]
 gi|33576878|emb|CAE33958.1| integration host factor beta-subunit [Bordetella bronchiseptica
           RB50]
          Length = 110

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 15  SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVK 74
           ++   L+ +D+   V T+ + +  +   G+ I+I  F +F + Q+  R+GRN ++ ++V 
Sbjct: 3   ARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRIGRNPKSGEQVL 62

Query: 75  IDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           +  ++V  FKA   L++R+  D+ G     D 
Sbjct: 63  VPGKQVPHFKAGKELRERV--DLVGNDQGDDS 92


>gi|296444587|ref|ZP_06886551.1| histone family protein DNA-binding protein [Methylosinus
           trichosporium OB3b]
 gi|296257855|gb|EFH04918.1| histone family protein DNA-binding protein [Methylosinus
           trichosporium OB3b]
          Length = 141

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 1/95 (1%)

Query: 2   SKTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
            +T+TR+ L +++      LSR ++ + +   F EI D+ VRGE +K+ SF +F+V+ K 
Sbjct: 37  GRTLTRAALREAVYSCCPTLSRAEARQILDATFEEISDALVRGEPVKLRSFGSFNVRAKR 96

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            RVGRN +T  E  I  R+V+ FKAS +L  ++  
Sbjct: 97  ERVGRNPKTGVEAPICSRKVLTFKASPVLIAQVNG 131


>gi|291294582|ref|YP_003505980.1| histone family protein DNA-binding protein [Meiothermus ruber DSM
           1279]
 gi|290469541|gb|ADD26960.1| histone family protein DNA-binding protein [Meiothermus ruber DSM
           1279]
          Length = 100

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 44/87 (50%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           DL+  ++   GL +KD+   V    +++ ++   G  ++++ F TF V+ + +R G    
Sbjct: 14  DLIDQVAATAGLKKKDAKAAVDAFLSKVEEALKAGNKVQLTGFGTFEVRSRKARTGVKPG 73

Query: 69  TNQEVKIDPRRVVVFKASSILKKRIMD 95
           T Q++KI   +   FK    LK+ +  
Sbjct: 74  TTQKIKIPASKYPAFKPGKALKETVKK 100


>gi|50843144|ref|YP_056371.1| DNA-binding protein HU [Propionibacterium acnes KPA171202]
 gi|282855020|ref|ZP_06264352.1| DNA-binding protein HU [Propionibacterium acnes J139]
 gi|289425014|ref|ZP_06426793.1| DNA-binding protein HU [Propionibacterium acnes SK187]
 gi|289427803|ref|ZP_06429512.1| DNA-binding protein HU [Propionibacterium acnes J165]
 gi|295131204|ref|YP_003581867.1| DNA-binding protein HU [Propionibacterium acnes SK137]
 gi|50840746|gb|AAT83413.1| DNA-binding protein HU [Propionibacterium acnes KPA171202]
 gi|282581608|gb|EFB86993.1| DNA-binding protein HU [Propionibacterium acnes J139]
 gi|289154713|gb|EFD03399.1| DNA-binding protein HU [Propionibacterium acnes SK187]
 gi|289158985|gb|EFD07180.1| DNA-binding protein HU [Propionibacterium acnes J165]
 gi|291377085|gb|ADE00940.1| DNA-binding protein HU [Propionibacterium acnes SK137]
 gi|313763392|gb|EFS34756.1| DNA-binding protein HU [Propionibacterium acnes HL013PA1]
 gi|313773269|gb|EFS39235.1| DNA-binding protein HU [Propionibacterium acnes HL074PA1]
 gi|313793448|gb|EFS41499.1| DNA-binding protein HU [Propionibacterium acnes HL110PA1]
 gi|313801153|gb|EFS42416.1| DNA-binding protein HU [Propionibacterium acnes HL110PA2]
 gi|313808502|gb|EFS46967.1| DNA-binding protein HU [Propionibacterium acnes HL087PA2]
 gi|313812075|gb|EFS49789.1| DNA-binding protein HU [Propionibacterium acnes HL083PA1]
 gi|313812345|gb|EFS50059.1| DNA-binding protein HU [Propionibacterium acnes HL025PA1]
 gi|313814684|gb|EFS52398.1| DNA-binding protein HU [Propionibacterium acnes HL059PA1]
 gi|313819237|gb|EFS56951.1| DNA-binding protein HU [Propionibacterium acnes HL046PA2]
 gi|313821091|gb|EFS58805.1| DNA-binding protein HU [Propionibacterium acnes HL036PA1]
 gi|313823483|gb|EFS61197.1| DNA-binding protein HU [Propionibacterium acnes HL036PA2]
 gi|313827014|gb|EFS64728.1| DNA-binding protein HU [Propionibacterium acnes HL063PA1]
 gi|313834714|gb|EFS72428.1| DNA-binding protein HU [Propionibacterium acnes HL056PA1]
 gi|313837917|gb|EFS75631.1| DNA-binding protein HU [Propionibacterium acnes HL086PA1]
 gi|314917598|gb|EFS81429.1| DNA-binding protein HU [Propionibacterium acnes HL050PA1]
 gi|314919646|gb|EFS83477.1| DNA-binding protein HU [Propionibacterium acnes HL050PA3]
 gi|314924276|gb|EFS88107.1| DNA-binding protein HU [Propionibacterium acnes HL001PA1]
 gi|314925924|gb|EFS89755.1| DNA-binding protein HU [Propionibacterium acnes HL036PA3]
 gi|314930281|gb|EFS94112.1| DNA-binding protein HU [Propionibacterium acnes HL067PA1]
 gi|314956860|gb|EFT01014.1| DNA-binding protein HU [Propionibacterium acnes HL027PA1]
 gi|314957637|gb|EFT01740.1| DNA-binding protein HU [Propionibacterium acnes HL002PA1]
 gi|314960899|gb|EFT05000.1| DNA-binding protein HU [Propionibacterium acnes HL002PA2]
 gi|314963337|gb|EFT07437.1| DNA-binding protein HU [Propionibacterium acnes HL082PA1]
 gi|314967386|gb|EFT11485.1| DNA-binding protein HU [Propionibacterium acnes HL082PA2]
 gi|314968980|gb|EFT13078.1| DNA-binding protein HU [Propionibacterium acnes HL037PA1]
 gi|314974014|gb|EFT18110.1| DNA-binding protein HU [Propionibacterium acnes HL053PA1]
 gi|314975440|gb|EFT19535.1| DNA-binding protein HU [Propionibacterium acnes HL045PA1]
 gi|314979461|gb|EFT23555.1| DNA-binding protein HU [Propionibacterium acnes HL072PA2]
 gi|314982105|gb|EFT26198.1| DNA-binding protein HU [Propionibacterium acnes HL110PA3]
 gi|314984200|gb|EFT28292.1| DNA-binding protein HU [Propionibacterium acnes HL005PA1]
 gi|314988445|gb|EFT32536.1| DNA-binding protein HU [Propionibacterium acnes HL005PA2]
 gi|314988636|gb|EFT32727.1| DNA-binding protein HU [Propionibacterium acnes HL005PA3]
 gi|315079383|gb|EFT51381.1| DNA-binding protein HU [Propionibacterium acnes HL053PA2]
 gi|315080039|gb|EFT52015.1| DNA-binding protein HU [Propionibacterium acnes HL078PA1]
 gi|315083409|gb|EFT55385.1| DNA-binding protein HU [Propionibacterium acnes HL027PA2]
 gi|315086796|gb|EFT58772.1| DNA-binding protein HU [Propionibacterium acnes HL002PA3]
 gi|315089443|gb|EFT61419.1| DNA-binding protein HU [Propionibacterium acnes HL072PA1]
 gi|315090344|gb|EFT62320.1| DNA-binding protein HU [Propionibacterium acnes HL110PA4]
 gi|315093627|gb|EFT65603.1| DNA-binding protein HU [Propionibacterium acnes HL060PA1]
 gi|315097786|gb|EFT69762.1| DNA-binding protein HU [Propionibacterium acnes HL038PA1]
 gi|315098017|gb|EFT69993.1| DNA-binding protein HU [Propionibacterium acnes HL059PA2]
 gi|315102637|gb|EFT74613.1| DNA-binding protein HU [Propionibacterium acnes HL046PA1]
 gi|315104472|gb|EFT76448.1| DNA-binding protein HU [Propionibacterium acnes HL050PA2]
 gi|315106215|gb|EFT78191.1| DNA-binding protein HU [Propionibacterium acnes HL030PA1]
 gi|315110452|gb|EFT82428.1| DNA-binding protein HU [Propionibacterium acnes HL030PA2]
 gi|327325389|gb|EGE67194.1| DNA-binding protein HU [Propionibacterium acnes HL096PA2]
 gi|327325467|gb|EGE67271.1| DNA-binding protein HU [Propionibacterium acnes HL103PA1]
 gi|327328272|gb|EGE70036.1| DNA-binding protein HU [Propionibacterium acnes HL096PA3]
 gi|327332409|gb|EGE74145.1| DNA-binding protein HU [Propionibacterium acnes HL097PA1]
 gi|327443682|gb|EGE90336.1| DNA-binding protein HU [Propionibacterium acnes HL043PA1]
 gi|327449219|gb|EGE95873.1| DNA-binding protein HU [Propionibacterium acnes HL043PA2]
 gi|327450187|gb|EGE96841.1| DNA-binding protein HU [Propionibacterium acnes HL013PA2]
 gi|327451216|gb|EGE97870.1| DNA-binding protein HU [Propionibacterium acnes HL087PA3]
 gi|327451251|gb|EGE97905.1| DNA-binding protein HU [Propionibacterium acnes HL092PA1]
 gi|327452573|gb|EGE99227.1| DNA-binding protein HU [Propionibacterium acnes HL083PA2]
 gi|328751969|gb|EGF65585.1| DNA-binding protein HU [Propionibacterium acnes HL025PA2]
 gi|328754787|gb|EGF68403.1| DNA-binding protein HU [Propionibacterium acnes HL087PA1]
 gi|328756757|gb|EGF70373.1| DNA-binding protein HU [Propionibacterium acnes HL020PA1]
 gi|328761031|gb|EGF74583.1| DNA-binding protein HU [Propionibacterium acnes HL099PA1]
 gi|332676081|gb|AEE72897.1| DNA-binding protein HU [Propionibacterium acnes 266]
          Length = 91

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+K+++K+  L+   +   V  L + I  +  +GE +++    T    ++ +R G
Sbjct: 1  MTKSELIKTVAKQASLTEAQTNEAVKALTDVITAALAKGEKVQLPGLFTAETVERPARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + + I   + V   ASS LKK + D
Sbjct: 61 RNPRTGESMTIPAHKAVKISASSTLKKAVAD 91


>gi|240141766|ref|YP_002966245.1| integration host factor (IHF) like DNA-binding protein
           [Methylobacterium extorquens AM1]
 gi|240012945|gb|ACS44168.1| integration host factor (IHF) like DNA-binding protein
           [Methylobacterium extorquens AM1]
          Length = 163

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + RS+LV  ++ +   L  KD    V+ +   I D+ V G+ ++I  F  F  K   +R 
Sbjct: 59  MIRSELVTRLAAQNPHLYEKDCEAVVSAVLARIEDALVAGDRVEIRGFGAFSTKDIRARQ 118

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN +T + V +  ++ V F+    +++R+ 
Sbjct: 119 GRNPRTGESVLVAEKKAVQFRPGKGMRQRLK 149


>gi|52842915|ref|YP_096714.1| integration host factor subunit alpha [Legionella pneumophila
          subsp. pneumophila str. Philadelphia 1]
 gi|81680386|sp|Q5ZS10|IHFA_LEGPH RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|52630026|gb|AAU28767.1| integration host factor (IHF) alpha subunit [Legionella
          pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 99

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 50/93 (53%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            ++++ + +++  E  L++  +   V   F E+  +   G+ +K+S F  F ++ K  R
Sbjct: 4  NALSKAIMAETLCDELKLNKPVAKEMVENFFEELRHALENGQHVKLSGFGNFTLRDKPQR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           GRN +T +E+ ++ RRVV FK    LK +I  
Sbjct: 64 PGRNPKTGEEIPVEARRVVTFKPGLKLKTKIEK 96


>gi|218259892|ref|ZP_03475424.1| hypothetical protein PRABACTJOHN_01083 [Parabacteroides johnsonii
          DSM 18315]
 gi|218224857|gb|EEC97507.1| hypothetical protein PRABACTJOHN_01083 [Parabacteroides johnsonii
          DSM 18315]
          Length = 96

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 43/91 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++++++  GL ++ + + +    + + ++    E I +  F T   + +  R+ 
Sbjct: 1  MNKAELIEALAQRSGLQKQKAKKLLEAYVDIVTEAMSHNEEIVLVGFGTLIPRPQTERLA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T   V I  R  V FK    L   I  
Sbjct: 61 RNPKTGTPVMIPARTTVKFKPGKYLLDAINK 91


>gi|254293751|ref|YP_003059774.1| histone family protein DNA-binding protein [Hirschia baltica ATCC
           49814]
 gi|254042282|gb|ACT59077.1| histone family protein DNA-binding protein [Hirschia baltica ATCC
           49814]
          Length = 103

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 64/99 (64%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KTITR+D+V  +  E GL+R+DS+ ++  +   +C+  V   ++K++ F  F V++K +R
Sbjct: 4   KTITRADIVDKLVSEVGLTRQDSSDYLERVLEMVCEELVADNSVKLARFGNFVVRRKNAR 63

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           VGRN +T +E  I  RRVV FK S ++++R+   +  ++
Sbjct: 64  VGRNPKTGKEAPITARRVVTFKPSPLMRRRVEAALASKE 102


>gi|225874874|ref|YP_002756333.1| DNA-binding protein HU 1 [Acidobacterium capsulatum ATCC 51196]
 gi|225793630|gb|ACO33720.1| DNA-binding protein HU 1 [Acidobacterium capsulatum ATCC 51196]
          Length = 89

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 44/85 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + D++  + +  GL R  +   V T+F  +  +   G+ I++  F  F+V+ + + +G
Sbjct: 1  MIKQDIIHHVIERTGLPRTKAEHAVDTVFESLKHALAEGQRIELRGFGVFNVRPRKTGIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN +T  EV I P + V FK    L
Sbjct: 61 RNPRTGTEVSITPGKAVRFKPGKDL 85


>gi|116748864|ref|YP_845551.1| histone family protein DNA-binding protein [Syntrophobacter
          fumaroxidans MPOB]
 gi|116697928|gb|ABK17116.1| histone family protein DNA-binding protein [Syntrophobacter
          fumaroxidans MPOB]
          Length = 96

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 53/92 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+++++K  G++ K +   V   F  + ++ +R + ++I  F +F VK      G
Sbjct: 1  MTKSELIETLAKAEGITLKAAETAVNVAFQSMENALIRSDRLEIRGFGSFKVKNYEGYKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T + ++++ +++  FK    LK+R+   
Sbjct: 61 RNPKTGELIEVNSKKLPFFKVGKELKERVNGS 92


>gi|126661201|ref|ZP_01732276.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110]
 gi|126617496|gb|EAZ88290.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110]
          Length = 91

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 43/90 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  LVK+I+ E G  +   T+ +      I ++   G+ + +  F TF  + +  R G
Sbjct: 1  MNKEQLVKAIAAETGQPQSVVTKILNATTETIVETVANGDKLTLVGFGTFEPRPRKERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT + + I    +  F A  I K+++ 
Sbjct: 61 KNPQTGEPLTIPATTIPAFSAGKIFKEKVK 90


>gi|315419719|gb|ADU15829.1| histone-like protein [Streptococcus gordonii]
          Length = 91

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 49/89 (55%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  ++    L++KDS   V  +F  + +   +GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAAATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+KI   +V  FKA   LK  I 
Sbjct: 63 NPQTGKEIKIAASKVPAFKAGKALKDVIK 91


>gi|54295550|ref|YP_127965.1| hypothetical protein lpl2637 [Legionella pneumophila str. Lens]
 gi|54298700|ref|YP_125069.1| integration host factor subunit alpha [Legionella pneumophila
          str. Paris]
 gi|148358554|ref|YP_001249761.1| integration host factor subunit alpha [Legionella pneumophila
          str. Corby]
 gi|296108357|ref|YP_003620058.1| integration host factor (IHF) alpha subunit [Legionella
          pneumophila 2300/99 Alcoy]
 gi|81679131|sp|Q5WT88|IHFA_LEGPL RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|81679385|sp|Q5X1H9|IHFA_LEGPA RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|172047871|sp|A5IAL5|IHFA_LEGPC RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|53752485|emb|CAH13917.1| hypothetical protein lpp2764 [Legionella pneumophila str. Paris]
 gi|53755382|emb|CAH16878.1| hypothetical protein lpl2637 [Legionella pneumophila str. Lens]
 gi|148280327|gb|ABQ54415.1| integration host factor (IHF) alpha subunit [Legionella
          pneumophila str. Corby]
 gi|295650259|gb|ADG26106.1| integration host factor (IHF) alpha subunit [Legionella
          pneumophila 2300/99 Alcoy]
 gi|307611586|emb|CBX01268.1| hypothetical protein LPW_29661 [Legionella pneumophila 130b]
          Length = 97

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 50/93 (53%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            ++++ + +++  E  L++  +   V   F E+  +   G+ +K+S F  F ++ K  R
Sbjct: 2  NALSKAIMAETLCDELKLNKPVAKEMVENFFEELRHALENGQHVKLSGFGNFTLRDKPQR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           GRN +T +E+ ++ RRVV FK    LK +I  
Sbjct: 62 PGRNPKTGEEIPVEARRVVTFKPGLKLKTKIEK 94


>gi|104784354|ref|YP_610852.1| DNA-binding protein HU-alpha [Pseudomonas entomophila L48]
 gi|95113341|emb|CAK18069.1| DNA-binding protein HU-alpha [Pseudomonas entomophila L48]
          Length = 98

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 1/99 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + + +L   I+++  L+++ +   +  + + I  +  + + + +  F TF  + +G+R G
Sbjct: 1   MRKPELAAVIAEKADLTKEKANIVLNAILDSITGALDK-DTVTLVGFGTFEKRHRGARTG 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           +N QT Q VKI     V FK    L+  +    +  K  
Sbjct: 60  KNPQTGQPVKIKASNTVAFKPGKNLRDSVNAPAKPAKKK 98


>gi|332882318|ref|ZP_08449946.1| DNA-binding protein HRL53 [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332679702|gb|EGJ52671.1| DNA-binding protein HRL53 [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 106

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 51/102 (50%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + + +L  +++++ GL++ ++ +    +   + +   +   I +  F +F VKQK +R G
Sbjct: 1   MNKKELCNALAEKTGLTKTEAQKAFNAVIEIVANEMKKNGRITLIGFGSFSVKQKAARKG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
            N  +   + I  ++VV FK S  L   +    RGRK   ++
Sbjct: 61  MNPTSFAPIDIPAKKVVNFKPSIYLNHLLNVKKRGRKRKDEN 102


>gi|297559169|ref|YP_003678143.1| histone family protein DNA-binding protein [Nocardiopsis
          dassonvillei subsp. dassonvillei DSM 43111]
 gi|296843617|gb|ADH65637.1| histone family protein DNA-binding protein [Nocardiopsis
          dassonvillei subsp. dassonvillei DSM 43111]
          Length = 93

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+ +IS   G  +K +T  V  + + I  +   G+ + I+ F  F   ++ +R  
Sbjct: 1  MNKRDLIDAISDRLG-DKKTATEAVNAVLDTIQATVASGDKVAITGFGVFEKSERAARTA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN  T   + +    V  F+A +  K  +  D +
Sbjct: 60 RNPATGATINVPASFVPKFRAGADFKALVNGDKK 93


>gi|329906686|ref|ZP_08274482.1| Integration host factor beta subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547181|gb|EGF32042.1| Integration host factor beta subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 92

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)

Query: 14  ISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQE 72
           +++ +  L  KD+   V T+ + + D+   G+ I+I  F +F +  +  R+GRN ++ ++
Sbjct: 1   MAERYPQLVAKDADYAVKTILDAMIDALATGQRIEIRGFGSFSLNSRPPRIGRNPKSGEK 60

Query: 73  VKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           V +  +RV  FK    L++R+ D M G+   +D
Sbjct: 61  VMVPEKRVPHFKPGKELRERV-DAMVGQPIIED 92


>gi|239907543|ref|YP_002954284.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
          RS-1]
 gi|239797409|dbj|BAH76398.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
          RS-1]
          Length = 92

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 50/92 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+K++ +++ L  + +  FV + F  I  + V G+ +++  F +F VK+     G
Sbjct: 1  MNKGELIKAVGEKYNLDHEFAVEFVNSFFESIKQALVNGDRVEVRGFGSFAVKEYDGYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T  +V++ P+++  FK     K  +  +
Sbjct: 61 RNPKTGIKVEVKPKKIPFFKTGRDFKNYLNRE 92


>gi|299139526|ref|ZP_07032700.1| histone family protein DNA-binding protein [Acidobacterium sp.
          MP5ACTX8]
 gi|298598454|gb|EFI54618.1| histone family protein DNA-binding protein [Acidobacterium sp.
          MP5ACTX8]
          Length = 89

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 43/85 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL++ + +  GL R  +   V  +F  + ++    + I++  F  F VK + + VG
Sbjct: 1  MIKQDLIQRVVERTGLPRTKAEAAVDAIFEAMKNALGNSDRIELRGFGVFTVKPRKTGVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN +T  EV I P + V FK    L
Sbjct: 61 RNPRTGAEVTITPGKAVRFKPGKEL 85


>gi|23009809|ref|ZP_00050720.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magnetotacticum MS-1]
          Length = 99

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 51/92 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ +S+LV +I+ +  LS+ D+ + +      + +S  +GEA+K++   +    ++ +R 
Sbjct: 8  SLNKSELVSAIASKADLSKADAEKALNAFQEVLIESLGKGEAVKVTGLLSVERVERAART 67

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +E+ I     V   A S+LKK +  
Sbjct: 68 GRNPRTGEEISIPAGYGVKISAGSLLKKAVAK 99


>gi|319645785|ref|ZP_08000015.1| DNA-binding protein HU 1 [Bacillus sp. BT1B_CT2]
 gi|317391535|gb|EFV72332.1| DNA-binding protein HU 1 [Bacillus sp. BT1B_CT2]
          Length = 91

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 44/72 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ ++++   L++KD    V + F+ I  +   GE +K+  F +F V+++ +R G
Sbjct: 1  MNKKELIGAVAEATELTKKDVELVVDSTFDVITSALKDGEKVKVHGFGSFEVRERAARKG 60

Query: 65 RNLQTNQEVKID 76
          RN Q+ +E++I 
Sbjct: 61 RNPQSGEEIEIP 72


>gi|294023740|ref|YP_003547059.1| histone-like DNA-binding protein [Sphingobium japonicum UT26S]
 gi|292677520|dbj|BAI99036.1| histone-like DNA-binding protein [Sphingobium japonicum UT26S]
          Length = 91

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  SDL ++++   GLS+ D+ + V T+F+ I ++A +G+ I ++ F  F VK    R G
Sbjct: 1  MNNSDLAEAVAGAHGLSKADAKKVVDTVFSTIGEAAAKGDEISLNGFGKFKVKASSERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T + + I   + + F  + ++K ++  
Sbjct: 61 RNPATGETITIKASKKLGFTPAKVIKDKLNG 91


>gi|114798281|ref|YP_759882.1| putative integration host factor subunit alpha [Hyphomonas
          neptunium ATCC 15444]
 gi|114738455|gb|ABI76580.1| putative integration host factor, alpha subunit [Hyphomonas
          neptunium ATCC 15444]
          Length = 98

 Score =  109 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 59/97 (60%), Gaps = 1/97 (1%)

Query: 1  MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          MS +T+TR+++  +I +E G++R++S   +    + I  +  + + +K++ F  F V+ K
Sbjct: 1  MSDRTLTRAEVTDAIVREVGVTRQESADLLDRTLDLIGAALEQEQEVKLARFGNFVVRSK 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           +R GRN +T +E  I  RRVV F+ S +LK ++  D
Sbjct: 61 AAREGRNPKTGEEAPIAARRVVTFRPSPMLKSQVGGD 97


>gi|313829872|gb|EFS67586.1| DNA-binding protein HU [Propionibacterium acnes HL007PA1]
          Length = 91

 Score =  109 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+K+++K+  L+   +   V  L ++I  +  +GE +++    T    ++ +R G
Sbjct: 1  MTKSELIKTVAKQASLTEAQTNEAVKALTDDITAALAKGEKVQLPGLFTAETVERPARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + + I   + V   ASS LKK + D
Sbjct: 61 RNPRTGESMTIPAHKAVKISASSTLKKAVAD 91


>gi|320354295|ref|YP_004195634.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
 gi|320122797|gb|ADW18343.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
          Length = 95

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 55/94 (58%), Gaps = 1/94 (1%)

Query: 4  TITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T+T++DLV+ + K    L++  ST  V T       S + GE + +S F  F++K K SR
Sbjct: 2  TLTKADLVQQVYKTHPNLTKSQSTESVETFLALSKSSLITGEDLLLSGFGKFNIKDKKSR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           GRN QT  E+ +D RRVV FK S IL+ RI  D
Sbjct: 62 RGRNPQTGNELTLDARRVVTFKPSGILRSRINSD 95


>gi|296270760|ref|YP_003653392.1| histone family protein DNA-binding protein [Thermobispora bispora
           DSM 43833]
 gi|296093547|gb|ADG89499.1| histone family protein DNA-binding protein [Thermobispora bispora
           DSM 43833]
          Length = 98

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 1/99 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + + +LV++I+   G  +K +T  V  +   I ++  RG+ + I+ F  F +  K +R  
Sbjct: 1   MNKRELVEAIADRVG-DKKTATEAVNAVLETIQNAVARGDKVSITGFGAFEMVHKPARTA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           RN  T   +K++      F+  +  K+ +    +  K  
Sbjct: 60  RNPSTGAPIKVEESWAPRFRPGAEFKELVNAGGKAAKKK 98


>gi|330813819|ref|YP_004358058.1| integration host factor alpha subunit [Candidatus Pelagibacter
          sp. IMCC9063]
 gi|327486914|gb|AEA81319.1| integration host factor alpha subunit [Candidatus Pelagibacter
          sp. IMCC9063]
          Length = 93

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  L+  IS    LS+ D+ R    + N I D+    + +KI+ F T+ V ++ +R G
Sbjct: 1  MNKKQLIAKISASMNLSKADAERTFDGITNIILDALKNDDNVKIAGFGTYKVAKRKARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + ++I   + V F  +  LK+    
Sbjct: 61 RNPRTGETIQISASQKVKFLPAKALKEMFNK 91


>gi|194098875|ref|YP_002001939.1| integration host factor subunit beta [Neisseria gonorrhoeae
          NCCP11945]
 gi|240115896|ref|ZP_04729958.1| integration host factor subunit beta [Neisseria gonorrhoeae
          PID18]
 gi|260440289|ref|ZP_05794105.1| integration host factor subunit beta [Neisseria gonorrhoeae DGI2]
 gi|193934165|gb|ACF29989.1| integration host factor beta-subunit [Neisseria gonorrhoeae
          NCCP11945]
          Length = 92

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 10 LVKSISKE--FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          L +  + +    L  KD    V  L + +  S  RG+ I+I  F +F +  + +R+GRN 
Sbjct: 4  LAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNP 63

Query: 68 QTNQEVKIDPRRVVVFKASSILKKRI 93
          +T + V++  + V  FK    L++R+
Sbjct: 64 KTGERVEVPEKHVPHFKPGKELRERV 89


>gi|206890254|ref|YP_002249563.1| DNA-binding protein HU 1 [Thermodesulfovibrio yellowstonii DSM
          11347]
 gi|206742192|gb|ACI21249.1| DNA-binding protein HU 1 [Thermodesulfovibrio yellowstonii DSM
          11347]
          Length = 92

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ +SK+   L++K     +  +F+ + ++  RGE I+I  FA F VKQ+  R+
Sbjct: 1  MKKSELIERVSKKVDILTKKQIETIIDMIFDCMIETLSRGEKIEIRGFANFKVKQRPERI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN +T +++K+  +R + FK S  LK+ +  
Sbjct: 61 ARNPKTGEQIKVPTQRAINFKMSKALKEALNK 92


>gi|313207044|ref|YP_004046221.1| histone family protein DNA-binding protein [Riemerella
           anatipestifer DSM 15868]
 gi|312446360|gb|ADQ82715.1| histone family protein DNA-binding protein [Riemerella
           anatipestifer DSM 15868]
 gi|315022562|gb|EFT35589.1| DNA-binding protein HU [Riemerella anatipestifer RA-YM]
 gi|325335519|gb|ADZ11793.1| Bacterial nucleoid DNA-binding protein [Riemerella anatipestifer
           RA-GD]
          Length = 97

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 49/96 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+++LV +IS + G+ + D+ + +     EI  S   G  + +  F +F +K + ++ G
Sbjct: 1   MTKAELVNTISNKLGIEKNDTQKVIEAFMQEIRGSLYEGNNVYLRGFGSFIIKTRAAKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RN+  N  ++I    +  FK S    +R+   +  +
Sbjct: 61  RNISKNTAIEIPAHNIPAFKPSKSFAERVKTKVPVK 96


>gi|182678712|ref|YP_001832858.1| histone family protein DNA-binding protein [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182634595|gb|ACB95369.1| histone family protein DNA-binding protein [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 122

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 1/105 (0%)

Query: 3   KTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           KT TR+DL+ +I      LSR  +         EI ++ +RGE +K+ SF  F V+ K  
Sbjct: 18  KTATRADLLDAIYTSCSFLSRAQTREIFEMALEEISEALLRGETVKLRSFGLFSVRAKRE 77

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           R+GRN +T  EV I PRRV+ FKAS +L   +       +   +D
Sbjct: 78  RIGRNPRTGVEVPIKPRRVLTFKASPVLAASVNGTQVPVEDGHED 122


>gi|269925821|ref|YP_003322444.1| histone family protein DNA-binding protein [Thermobaculum
          terrenum ATCC BAA-798]
 gi|269789481|gb|ACZ41622.1| histone family protein DNA-binding protein [Thermobaculum
          terrenum ATCC BAA-798]
          Length = 84

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 45/81 (55%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++L+  +++  G+++    +    + +EI  S  +GE + I  F TF V ++  R GRN
Sbjct: 4  KTELINQVAERTGMTKSQVQKVFEEMLSEIRSSLEKGEDVIIRGFGTFKVTERSPRKGRN 63

Query: 67 LQTNQEVKIDPRRVVVFKASS 87
           +T +E++I   + V F+ S 
Sbjct: 64 PRTGEEIEIPGGKRVTFRMSK 84


>gi|302035785|ref|YP_003796107.1| transcriptional dual regulator HU-alpha [Candidatus Nitrospira
          defluvii]
 gi|300603849|emb|CBK40181.1| Transcriptional dual regulator HU-alpha [Candidatus Nitrospira
          defluvii]
          Length = 90

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +L+  ++   G+++  +T  +      +  S  +G+ + + +F TF + ++ +R+G
Sbjct: 1  MTKEELIAKMANSAGITKVAATVALEAFTGAVTTSLKKGKRVTLVNFGTFTISKRKARMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + +KI   R+  F A   LK  + 
Sbjct: 61 RNPRTGEALKIPAARIPKFSAGKELKAAVK 90


>gi|154490160|ref|ZP_02030421.1| hypothetical protein PARMER_00392 [Parabacteroides merdae ATCC
           43184]
 gi|154089052|gb|EDN88096.1| hypothetical protein PARMER_00392 [Parabacteroides merdae ATCC
           43184]
          Length = 96

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 44/96 (45%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L++++++  GL ++ + + +    + + ++    E I +  F T   + +  R+ 
Sbjct: 1   MNKAELIEALAQRSGLQKQKAKKLLEAYVDIVTEAMSHNEEIVLIGFGTLIPRPQTERLA 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RN +T   V I  R  V FK    L   I      +
Sbjct: 61  RNPKTGTPVMIPARTTVKFKPGKYLLDAINKPEEKK 96


>gi|229586413|ref|YP_002844914.1| DNA-binding protein HU [Rickettsia africae ESF-5]
 gi|228021463|gb|ACP53171.1| DNA-binding protein HU [Rickettsia africae ESF-5]
          Length = 138

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 3   KTITRSDLVKSI---------SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53
           K + +++ +  +         +    L++ ++ + +  + + +  +      I I+ F +
Sbjct: 38  KKMNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGS 97

Query: 54  FHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           F +  + +R GRN +T  +++ID      F+A   +K+ 
Sbjct: 98  FEIHHRKAREGRNPKTGAKMQIDAYNQPTFRAGRKMKEA 136


>gi|118580201|ref|YP_901451.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
 gi|118502911|gb|ABK99393.1| histone family protein DNA-binding protein [Pelobacter
          propionicus DSM 2379]
          Length = 91

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 51/89 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + RS+L++ ++    +S K +   +T +F+ + ++ V+ E I+I    +F +K+  +  G
Sbjct: 1  MNRSELIEHLALRKDISHKRAEEIITLIFSAMTEAMVKNERIEIRGLGSFVIKEYDTYTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + + P+++  FK    LK+ +
Sbjct: 61 RNPKTGEPILVRPKKLPFFKVGKELKEMV 89


>gi|158522867|ref|YP_001530737.1| histone family protein DNA-binding protein [Desulfococcus
          oleovorans Hxd3]
 gi|158511693|gb|ABW68660.1| histone family protein DNA-binding protein [Desulfococcus
          oleovorans Hxd3]
          Length = 90

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRV 63
          +T+++L+  ++ +  +++  + + +    + +  +  + E  + +  F TF    + +R 
Sbjct: 1  MTKAELIDKMAADAKITKMAAGKALDAFMDGVTKALKKKEGKVTLVGFGTFAKAHRKART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QT + +KI    VV F+    L+  +
Sbjct: 61 GRNPQTGKPIKIKACNVVKFRPGKKLRDDV 90


>gi|325954785|ref|YP_004238445.1| histone family protein DNA-binding protein [Weeksella virosa DSM
          16922]
 gi|323437403|gb|ADX67867.1| histone family protein DNA-binding protein [Weeksella virosa DSM
          16922]
          Length = 97

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 48/94 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V +IS + GL + D+ R +    +E+  S   GE + +  F +F +K++  + G
Sbjct: 1  MTKADIVNNISSKLGLEKGDTQRVIEAFMDEVIKSLENGENVYLRGFGSFTIKKRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN+     + I    V  FK +    + +   ++
Sbjct: 61 RNITKGTSIIIPAHNVPGFKPAKSFVESVKAKVK 94


>gi|320104532|ref|YP_004180123.1| histone family protein DNA-binding protein [Isosphaera pallida ATCC
           43644]
 gi|319751814|gb|ADV63574.1| histone family protein DNA-binding protein [Isosphaera pallida ATCC
           43644]
          Length = 126

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 6/104 (5%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+ D+VK IS E GL++  + + V    + I  + V+   I++ +F  F VK++ +R  
Sbjct: 1   MTKKDIVKRISDEVGLTQLKTKQIVQLTLDAIIQTLVQEGQIELRNFGVFKVKRRAARKA 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT 108
           RN +T  +V +  + VV FK    ++  +      R  N DD+ 
Sbjct: 61  RNPRTGAKVTVPAKTVVTFKPGKEMEDLV------RSMNPDDLP 98


>gi|330999754|ref|ZP_08323462.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT
          11859]
 gi|329573916|gb|EGG55496.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT
          11859]
          Length = 92

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 41/90 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ ++++  G S+ D    +  L  +I  +   G+ I +  F TF   ++ +R G
Sbjct: 1  MNKTELIAAVAEASGKSKADVKDVLDALTAQIVKTVKAGDEISLVGFGTFKSAKREARAG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T   ++I       F A    K  + 
Sbjct: 61 RNPATGATIQIPASVQPKFVAGKQFKDALN 90


>gi|323485131|ref|ZP_08090483.1| hypothetical protein HMPREF9474_02234 [Clostridium symbiosum
          WAL-14163]
 gi|323694024|ref|ZP_08108208.1| histone family protein DNA-binding protein [Clostridium symbiosum
          WAL-14673]
 gi|323401561|gb|EGA93907.1| hypothetical protein HMPREF9474_02234 [Clostridium symbiosum
          WAL-14163]
 gi|323501960|gb|EGB17838.1| histone family protein DNA-binding protein [Clostridium symbiosum
          WAL-14673]
          Length = 92

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  LV S+S + GL+ + S + +  L N I      G  +++  F  F V  +  R+ 
Sbjct: 1  MNKRQLVDSMSAKSGLTTRQSEKALNGLMNVIHTELSSGGNVQLVGFGVFRVADRKDRIA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + +KI  R+  VF+A S LK  +  
Sbjct: 61 RNPQTGEAMKIKGRKAPVFRAGSTLKNVVNG 91


>gi|313828230|gb|EFS65944.1| DNA-binding protein HU [Propionibacterium acnes HL063PA2]
 gi|314914530|gb|EFS78361.1| DNA-binding protein HU [Propionibacterium acnes HL005PA4]
          Length = 91

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+K+++K+  L+   +   V  L + I  +  +GE +++    T    ++ +R G
Sbjct: 1  MTKSELIKTVAKQASLTEAQTNEAVKALPDVITAALAKGEKVQLPGLFTAETVERPARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + + I   + V   ASS LKK + D
Sbjct: 61 RNPRTGESMTIPAHKAVKISASSTLKKAVAD 91


>gi|218129554|ref|ZP_03458358.1| hypothetical protein BACEGG_01131 [Bacteroides eggerthii DSM 20697]
 gi|217988284|gb|EEC54607.1| hypothetical protein BACEGG_01131 [Bacteroides eggerthii DSM 20697]
          Length = 106

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 1/103 (0%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + + +L+K+++   GL   D+++ ++   N + D   RGE +  S    F V++  +R G
Sbjct: 1   MNKQELIKAVAAASGLCVVDASKEMSAFENILEDCMARGEILSWSGVGAFCVREHKARPG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI-MDDMRGRKCNKDD 106
           RN  T   ++I  R+VV F     L++ +    + GR+    D
Sbjct: 61  RNPFTGLGMRIPTRKVVKFSPGKSLREAVIKKGIHGRRARCTD 103


>gi|126661383|ref|ZP_01732446.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110]
 gi|126617341|gb|EAZ88147.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110]
          Length = 91

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 42/90 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  LVK+I+ E G  +   T+ +      I ++   G+ + +  F TF  + +  R G
Sbjct: 1  MNKEQLVKAIAAETGQPQSVVTKILNATTETIVETVANGDKLTLVGFGTFEPRPRKERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N QT + + I    +  F A    K+++ 
Sbjct: 61 KNPQTGESLTIPATTIPAFSAGKAFKEKVK 90


>gi|271964928|ref|YP_003339124.1| hypothetical protein Sros_3445 [Streptosporangium roseum DSM
          43021]
 gi|270508103|gb|ACZ86381.1| conserved hypothetical protein [Streptosporangium roseum DSM
          43021]
          Length = 106

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 40/82 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L++  + E GLSR+ +   +  +   I  +    + + I  F +F +  K +R G
Sbjct: 12 MNKRELIEKAAAEAGLSRRQTAAALEAILGTIQTAVAAEDKVAIPGFGSFEIVHKPARTG 71

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN QT + ++I       FK S
Sbjct: 72 RNPQTGEPLEIAETWTAKFKPS 93


>gi|118594696|ref|ZP_01552043.1| Integration host factor, beta subunit [Methylophilales bacterium
          HTCC2181]
 gi|118440474|gb|EAV47101.1| Integration host factor, beta subunit [Methylophilales bacterium
          HTCC2181]
          Length = 92

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S L+  ++  F  L  KD+   V  + + +  + +  + I+I  F +F +  + SRV
Sbjct: 1  MTKSKLINILASRFNQLVHKDAELSVKAILDSMSQALINKDRIEIRGFGSFSLNFRPSRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN ++  +V +  + V  FKA   L+ R+
Sbjct: 61 GRNPKSGAQVHVPEKFVPHFKAGKELRVRV 90


>gi|157964238|ref|YP_001499062.1| DNA-binding protein HU [Rickettsia massiliae MTU5]
 gi|157844014|gb|ABV84515.1| DNA-binding protein HU [Rickettsia massiliae MTU5]
          Length = 139

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 3   KTITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
           K + +++ +  ++         L++ ++ + +  + + +  +      I I+ F +F + 
Sbjct: 43  KKMNKTEFIAFMTDHGHTSYKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFEIH 102

Query: 58  QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
            + +R GRN +T  ++KID      F+A   +K+ 
Sbjct: 103 HRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEA 137


>gi|301062187|ref|ZP_07202869.1| DNA-binding protein HU 1 [delta proteobacterium NaphS2]
 gi|300443699|gb|EFK07782.1| DNA-binding protein HU 1 [delta proteobacterium NaphS2]
          Length = 88

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+  +SK    ++K++   V  +F+ I D+    + + I  F TF V+++ +R G
Sbjct: 1  MNKGDLINEVSKVVS-TKKEAQAAVDCVFSSITDALKGKDKVTIIGFGTFKVEERKARKG 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N QT + + I  + V  F A   LK+ +
Sbjct: 60 INPQTGKSIDIAAKTVPKFVAGKALKESV 88


>gi|322387987|ref|ZP_08061594.1| DNA-binding protein HU [Streptococcus infantis ATCC 700779]
 gi|322392079|ref|ZP_08065541.1| DNA-binding protein HU [Streptococcus peroris ATCC 700780]
 gi|321141260|gb|EFX36758.1| DNA-binding protein HU [Streptococcus infantis ATCC 700779]
 gi|321144979|gb|EFX40378.1| DNA-binding protein HU [Streptococcus peroris ATCC 700780]
          Length = 91

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + +    GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFAAVTEFLSAGEKVQLIGFGNFEVRKRAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+KI   +V  FKA   LK+ + 
Sbjct: 63 NPQTGKEIKIKASKVPAFKAGKALKEAVK 91


>gi|323342075|ref|ZP_08082308.1| integration host factor subunit alpha [Erysipelothrix
          rhusiopathiae ATCC 19414]
 gi|322464500|gb|EFY09693.1| integration host factor subunit alpha [Erysipelothrix
          rhusiopathiae ATCC 19414]
          Length = 94

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 48/94 (51%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS+T  +  L +SI+ +  +S+K +  F+ T  +E+ +       + ++ F  F V+ + 
Sbjct: 1  MSETYNKKLLSESIAGKLDISKKQANEFIETFLDEVKEILENKGTVDLAGFGKFEVRHRA 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           R G N QT ++++I     V FK +  LK  + 
Sbjct: 61 ERDGFNPQTKEKIRIAASHSVGFKPAKALKDAVK 94


>gi|301064005|ref|ZP_07204470.1| integration host factor subunit beta [delta proteobacterium
          NaphS2]
 gi|300441916|gb|EFK06216.1| integration host factor subunit beta [delta proteobacterium
          NaphS2]
          Length = 92

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+++++KE  L  + +   V T+F E+  +    E ++I    +F VK      G
Sbjct: 1  MNKSELIEALAKEKDLPLRKAEEVVNTVFGEMEKALTDEERVEIRGLGSFKVKHYDGYKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + +  +++  FK    LK+R+
Sbjct: 61 RNPKTGEIINVGRKKLPFFKVGKELKERV 89


>gi|313672337|ref|YP_004050448.1| histone family protein DNA-binding protein [Calditerrivibrio
          nitroreducens DSM 19672]
 gi|312939093|gb|ADR18285.1| histone family protein DNA-binding protein [Calditerrivibrio
          nitroreducens DSM 19672]
          Length = 92

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L++ I++E   LS++     V  +FN I  +    E ++I  F +F V++K  + 
Sbjct: 1  MNKSELIEKIAEENPHLSKRQVEFIVNGVFNSIKSALESDEKVEIRGFGSFKVRKKNRKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN +T ++V ++ + V  FK S  +K  ++ 
Sbjct: 61 ARNPKTGEKVIVEAKSVPYFKPSREIKLALLK 92


>gi|308274087|emb|CBX30686.1| DNA-binding protein HU-beta [uncultured Desulfobacterium sp.]
          Length = 100

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63
           +T+++LV +I+ +  +++  +   + +    +  +   +   + +  F TF   ++ +R 
Sbjct: 11  MTKAELVDAIAADAKITKTAAVAALDSFTKNVTKALKSKDGKVTLVGFGTFSKAKRAARK 70

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN QT  E+KI  R VV FKA   LK+ +
Sbjct: 71  GRNPQTGAEIKIKARNVVKFKAGKKLKEAV 100


>gi|42524742|ref|NP_970122.1| putative DNA-binding protein HU-beta [Bdellovibrio bacteriovorus
          HD100]
 gi|39576952|emb|CAE78181.1| putative DNA-binding protein HU-beta [Bdellovibrio bacteriovorus
          HD100]
          Length = 90

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L++ I+ E  +S+  +   +      I  S  +G+ +K+  F TF   ++ +R G
Sbjct: 1  MNKAQLIEKIATETKVSKAQAEAILDCAVENIKKSVKKGDDVKLVGFGTFTKAKRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + +KI       F+A +  K  + 
Sbjct: 61 RNPQTGKAIKIPAAWAPKFRAGAEFKAMVK 90


>gi|332284737|ref|YP_004416648.1| integration host factor beta-subunit [Pusillimonas sp. T7-7]
 gi|330428690|gb|AEC20024.1| integration host factor beta-subunit [Pusillimonas sp. T7-7]
          Length = 103

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 45/86 (52%)

Query: 23  KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVV 82
           +D+   V T+ + +  +   G+ I+I  F +F + ++  R+GRN ++ ++V++  ++V  
Sbjct: 4   RDTDYAVKTVLDAMTQALASGQRIEIRGFGSFSLSERAPRIGRNPKSGEKVQVPGKQVPH 63

Query: 83  FKASSILKKRIMDDMRGRKCNKDDVT 108
           FK    L++R+         +  D +
Sbjct: 64  FKPGKELRERVDSAYDQEAESAADES 89


>gi|59801031|ref|YP_207743.1| IhfB [Neisseria gonorrhoeae FA 1090]
 gi|239999161|ref|ZP_04719085.1| integration host factor subunit beta [Neisseria gonorrhoeae
          35/02]
 gi|240013931|ref|ZP_04720844.1| integration host factor subunit beta [Neisseria gonorrhoeae
          DGI18]
 gi|240016373|ref|ZP_04722913.1| integration host factor subunit beta [Neisseria gonorrhoeae
          FA6140]
 gi|240080492|ref|ZP_04725035.1| integration host factor subunit beta [Neisseria gonorrhoeae FA19]
 gi|240113140|ref|ZP_04727630.1| integration host factor subunit beta [Neisseria gonorrhoeae MS11]
 gi|240118194|ref|ZP_04732256.1| integration host factor subunit beta [Neisseria gonorrhoeae PID1]
 gi|240121500|ref|ZP_04734462.1| integration host factor subunit beta [Neisseria gonorrhoeae
          PID24-1]
 gi|240123742|ref|ZP_04736698.1| integration host factor subunit beta [Neisseria gonorrhoeae
          PID332]
 gi|240125933|ref|ZP_04738819.1| integration host factor subunit beta [Neisseria gonorrhoeae
          SK-92-679]
 gi|254493934|ref|ZP_05107105.1| integration host factor beta-subunit [Neisseria gonorrhoeae 1291]
 gi|268599221|ref|ZP_06133388.1| integration host factor beta-subunit [Neisseria gonorrhoeae MS11]
 gi|297250508|ref|ZP_06864452.2| integration host factor subunit beta [Neisseria polysaccharea
          ATCC 43768]
 gi|59717926|gb|AAW89331.1| integration host factor beta subunit [Neisseria gonorrhoeae FA
          1090]
 gi|226512974|gb|EEH62319.1| integration host factor beta-subunit [Neisseria gonorrhoeae 1291]
 gi|268583352|gb|EEZ48028.1| integration host factor beta-subunit [Neisseria gonorrhoeae MS11]
 gi|296838821|gb|EFH22759.1| integration host factor subunit beta [Neisseria polysaccharea
          ATCC 43768]
 gi|316984100|gb|EFV63078.1| integration host factor subunit beta [Neisseria meningitidis
          H44/76]
 gi|317164448|gb|ADV07989.1| integration host factor subunit beta [Neisseria gonorrhoeae
          TCDC-NG08107]
          Length = 98

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 10 LVKSISKE--FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          L +  + +    L  KD    V  L + +  S  RG+ I+I  F +F +  + +R+GRN 
Sbjct: 4  LAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNP 63

Query: 68 QTNQEVKIDPRRVVVFKASSILKKRI 93
          +T + V++  + V  FK    L++R+
Sbjct: 64 KTGERVEVPEKHVPHFKPGKELRERV 89


>gi|124516626|gb|EAY58134.1| putative histone-like DNA-binding protein [Leptospirillum
          rubarum]
          Length = 91

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSRV 63
          + +++LV  I+    +++  +   +      I  +  + GE + +  F TF   ++ +R 
Sbjct: 1  MKKAELVDKIASSAKITKSQANDALNAALETIKKALKKDGEKVTLVGFGTFSTVKRKART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+KI   RV  F A    K  I 
Sbjct: 61 GRNPRTGKEIKIPAMRVPKFSAGKAFKGAIK 91


>gi|218886655|ref|YP_002435976.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris str. 'Miyazaki F']
 gi|218757609|gb|ACL08508.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris str. 'Miyazaki F']
          Length = 97

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 53/95 (55%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           KT+T++++V +I ++   +R +    V +L   +  +  +  A+ IS F  F    K +
Sbjct: 3  GKTLTKAEIVDAIYEKTDRNRAEVKGVVESLLGIMKQAIKKDHALLISGFGKFEAYDKKA 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          R GRN QT++ + + PR+VVVF+ S   +  + D+
Sbjct: 63 RKGRNPQTDETITLPPRKVVVFRLSRKFRAELNDE 97


>gi|15892135|ref|NP_359849.1| DNA-binding protein HU [Rickettsia conorii str. Malish 7]
 gi|15619264|gb|AAL02750.1| DNA-binding protein HU [Rickettsia conorii str. Malish 7]
          Length = 139

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 3   KTITRSDLVKSI---------SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53
           K + +++ +  +         +    L++ ++ + +  + + +  +      I I+ F +
Sbjct: 39  KKMNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGS 98

Query: 54  FHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           F +  + +R GRN +T  ++KID      F+A   +K+ 
Sbjct: 99  FEIHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEA 137


>gi|85859597|ref|YP_461799.1| DNA-binding protein HU [Syntrophus aciditrophicus SB]
 gi|85722688|gb|ABC77631.1| DNA-binding protein HU [Syntrophus aciditrophicus SB]
          Length = 93

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++++  +  +  +SRK+    V + F  I     +G  + IS F  + V+ K  R G
Sbjct: 3  LTKNEMMTMLYNQLNISRKECVDIVESFFEIIKSELEKGNPVMISGFGKWTVRPKRERKG 62

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +++ I  R+VV FKAS  L   I 
Sbjct: 63 RNPQTGEDLTITARKVVTFKASPNLISSIN 92


>gi|325125586|gb|ADY84916.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp.
          bulgaricus 2038]
          Length = 80

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 42/74 (56%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +++LV  ++ +  L++KD +  V  +F  I +   +GE +++  F TF V+  G+R GR
Sbjct: 3  NKAELVSEVAAKTKLTKKDVSEAVDAVFEAIQEDLAKGEKVQLIGFGTFEVRHLGARKGR 62

Query: 66 NLQTNQEVKIDPRR 79
          N QT  E +I   +
Sbjct: 63 NPQTGAENEIPASK 76


>gi|315651174|ref|ZP_07904205.1| DNA-binding protein HU [Eubacterium saburreum DSM 3986]
 gi|315486572|gb|EFU76923.1| DNA-binding protein HU [Eubacterium saburreum DSM 3986]
          Length = 93

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 5  ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + R++L+ +++K+ G  +++K++   +    + + +       I++  F TF    +  R
Sbjct: 1  MNRTELIDAMAKKMGDSVTKKEAESALKAFVDVVTEELTNKGKIQLVGFGTFETSVRPER 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            RN +T + +K+    V  FK    LK  + +
Sbjct: 61 EVRNPRTGETMKVAESVVAKFKPGKALKDAVNN 93


>gi|222824223|ref|YP_002575797.1| DNA-binding protein HU [Campylobacter lari RM2100]
 gi|58979407|gb|AAW83368.1| DNA-binding protein HU [Campylobacter lari]
 gi|58979429|gb|AAW83379.1| DNA-binding protein HU [Campylobacter lari]
 gi|222539445|gb|ACM64546.1| DNA-binding protein HU [Campylobacter lari RM2100]
          Length = 100

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 42/85 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+      +   I D   +G++I    F TF V ++ +R  
Sbjct: 1  MTKADFISQVAQTAGLTKKDAGAATDAVIATITDVLAKGDSISFIGFGTFSVAERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          R   T   +K+   +V  FK    L
Sbjct: 61 RVPSTGATIKVPATKVAKFKVGKNL 85


>gi|91217978|ref|ZP_01254930.1| DNA-binding protein HU [Psychroflexus torquis ATCC 700755]
 gi|91183836|gb|EAS70227.1| DNA-binding protein HU [Psychroflexus torquis ATCC 700755]
          Length = 96

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 51/96 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D+V +IS + GL + +    V T  +E+ +S   G+ + +  F +F VK +  + G
Sbjct: 1   MTKADIVANISDKLGLEKGEVQATVETFMDEVKNSLEGGDNVYLRGFGSFIVKTRAEKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RN+  N  +KI    +  FK + I  + +  ++  +
Sbjct: 61  RNISKNTTIKIPAHNIPAFKPAKIFVEGVKQNVEVK 96


>gi|148244734|ref|YP_001219428.1| integration host factor, alpha subunit [Candidatus
          Vesicomyosocius okutanii HA]
 gi|146326561|dbj|BAF61704.1| integration host factor, alpha subunit [Candidatus
          Vesicomyosocius okutanii HA]
          Length = 109

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 53/93 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +IT+ D+   + K   ++   +       F++I  +   GE++K+SSF  F +++K SRV
Sbjct: 2  SITKKDIANVLVKSMDITHVQALSITHDFFDQIKQTLASGESVKLSSFGNFIIREKSSRV 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V+I  RRVVVFK+   LK     D
Sbjct: 62 GRNPKTGEMVEISARRVVVFKSGPKLKLATQKD 94


>gi|188591467|ref|YP_001796066.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Cupriavidus taiwanensis]
 gi|170938862|emb|CAP63863.1| HU, DNA-binding transcriptional regulator, beta subunit
          [Cupriavidus taiwanensis LMG 19424]
          Length = 92

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+ +I+    GL++  + + +    + I D+  RG+A+ +  F +F   ++G R+
Sbjct: 1  MTKSELIDAIAAGVDGLTKAKAEQALNVTLSAIMDTVARGDALNLVGFGSFSKGERGERI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN +T +++ +D  + V F+     K    
Sbjct: 61 ARNPRTGEKITVDAAKTVKFRPGQKFKDAAN 91


>gi|14194637|sp|Q9XB20|DBH_STRGN RecName: Full=DNA-binding protein HU
 gi|5209334|gb|AAD40811.1|L40356_1 histone-like DNA-binding protein [Streptococcus gordonii]
          Length = 91

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 48/89 (53%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  ++    L++KDS   V  +F  + +   +GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAAATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E KI   +V  FKA   LK  + 
Sbjct: 63 NPQTGKETKIAASKVPAFKAGKALKDAVK 91


>gi|320353752|ref|YP_004195091.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
 gi|320122254|gb|ADW17800.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
          Length = 90

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV+S+++   +S+  + + +  +   + D+  +G+ + +  F TF   ++  R  
Sbjct: 1  MNKKELVESMAEAAEISKAAAEKALNGMLMAVSDALAKGDKVTLVGFGTFSTVKRTERKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +N +T   ++I  + +  FK  S L   + 
Sbjct: 61 KNPRTGAMIEIPSKTIAKFKPGSKLSDAVN 90


>gi|58979423|gb|AAW83376.1| DNA-binding protein HU [Campylobacter lari]
 gi|58979425|gb|AAW83377.1| DNA-binding protein HU [Campylobacter lari]
 gi|58979427|gb|AAW83378.1| DNA-binding protein HU [Campylobacter lari]
 gi|58979431|gb|AAW83380.1| DNA-binding protein HU [Campylobacter lari]
 gi|58979433|gb|AAW83381.1| DNA-binding protein HU [Campylobacter lari]
 gi|58979469|gb|AAW83399.1| DNA-binding protein HU [Campylobacter lari]
 gi|58979471|gb|AAW83400.1| DNA-binding protein HU [Campylobacter lari]
          Length = 100

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 43/85 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+T     +   I D   +G++I    F TF V ++ +R  
Sbjct: 1  MTKADFISQVAQTAGLTKKDATAATDAVIATITDVLAKGDSISFIGFGTFSVAERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          R   T   +K+   +V  FK    L
Sbjct: 61 RVPSTGATIKVPATKVAKFKVGKNL 85


>gi|51244752|ref|YP_064636.1| DNA-binding protein HU [Desulfotalea psychrophila LSv54]
 gi|50875789|emb|CAG35629.1| probable DNA-binding protein HU [Desulfotalea psychrophila LSv54]
          Length = 97

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 50/95 (52%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K + + D++ S+S+E  + ++D +     +   I ++  R   +++  F +F V+ +  R
Sbjct: 2  KRMLKKDIIDSVSEELSMQKQDVSVAADVILETISNALARDRRVELRGFGSFSVRSRKPR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
            +N +T Q + I  RR + F  S  LK+ ++ DM
Sbjct: 62 TTKNPRTGQVMDIPERRTLHFTMSKSLKESLISDM 96


>gi|310780405|ref|YP_003968737.1| histone family protein DNA-binding protein [Ilyobacter polytropus
          DSM 2926]
 gi|309749728|gb|ADO84389.1| histone family protein DNA-binding protein [Ilyobacter polytropus
          DSM 2926]
          Length = 91

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+ + VK   ++    S+ D+ R +      + D    G+ +    +  F V ++ +R+
Sbjct: 1  MTKKEFVKLFFEKGEFESKADAERKLDAFLTTVEDVLNDGDDVNFIGWGKFEVAERAARL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+KI+ ++VV FKA   L  ++ 
Sbjct: 61 GRNPKTGEEIKIEAKKVVKFKAGKKLNDKVN 91


>gi|315638696|ref|ZP_07893870.1| DNA-binding protein HU [Campylobacter upsaliensis JV21]
 gi|58979347|gb|AAW83338.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979399|gb|AAW83364.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979401|gb|AAW83365.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979403|gb|AAW83366.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979495|gb|AAW83412.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979497|gb|AAW83413.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979499|gb|AAW83414.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979501|gb|AAW83415.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979503|gb|AAW83416.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979505|gb|AAW83417.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979507|gb|AAW83418.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979509|gb|AAW83419.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979511|gb|AAW83420.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979513|gb|AAW83421.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979515|gb|AAW83422.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979517|gb|AAW83423.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979519|gb|AAW83424.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979521|gb|AAW83425.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979523|gb|AAW83426.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979525|gb|AAW83427.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979527|gb|AAW83428.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979529|gb|AAW83429.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979553|gb|AAW83441.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979577|gb|AAW83453.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979579|gb|AAW83454.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979583|gb|AAW83456.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979585|gb|AAW83457.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979587|gb|AAW83458.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979597|gb|AAW83463.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979603|gb|AAW83466.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979605|gb|AAW83467.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|315481320|gb|EFU71950.1| DNA-binding protein HU [Campylobacter upsaliensis JV21]
          Length = 98

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 43/85 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+      + + I +   +G++I    F TF   ++ +R  
Sbjct: 1  MTKADFISQVAQNAGLTKKDAGAATDAVISTITEVLAKGDSISFIGFGTFSTTERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          R   T + +K+   RV  FK    L
Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKSL 85


>gi|262276977|ref|ZP_06054770.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [alpha
          proteobacterium HIMB114]
 gi|262224080|gb|EEY74539.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [alpha
          proteobacterium HIMB114]
          Length = 91

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  LV  IS    LS+ D+ R   ++ N I D+    +A+KI+ F T+ V ++ +R G
Sbjct: 1  MNKKQLVAKISSTLNLSKADAERTFDSITNIILDALKDDDAVKIAGFGTYKVAKRKARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + ++I   + V F  +  LK     
Sbjct: 61 RNPRTGETIQISASQKVKFLPAKALKDMFNK 91


>gi|117926043|ref|YP_866660.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
 gi|117609799|gb|ABK45254.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
          Length = 91

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 53/89 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+ +++++  L ++ +   V  +FNE+  +  +GE +++  F  F  + +  R  
Sbjct: 1  MTKSELILAVAEQNTLHKQSAVMVVDMVFNELGKALAKGERVELRGFGVFEPRARKPRTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +N +T ++V ++P+  V FK    ++KR+
Sbjct: 61 KNPKTGEKVNVEPKTAVHFKPGLDMRKRV 89


>gi|254294205|ref|YP_003060228.1| histone family protein DNA-binding protein [Hirschia baltica ATCC
          49814]
 gi|254042736|gb|ACT59531.1| histone family protein DNA-binding protein [Hirschia baltica ATCC
          49814]
          Length = 88

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 46/87 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L K +++   +++ ++ R V  + + I     +GE + ++ F TF  K +  R G
Sbjct: 1  MNKSELTKQVAEAASMTQSEAGRAVDAVLDTISSELKKGEQVALAGFGTFLAKTREERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN  T + + I  +    FK +S+LK 
Sbjct: 61 RNPATGKPMTIPKKTSASFKPASVLKD 87


>gi|163787183|ref|ZP_02181630.1| DNA-binding protein HU [Flavobacteriales bacterium ALC-1]
 gi|159877071|gb|EDP71128.1| DNA-binding protein HU [Flavobacteriales bacterium ALC-1]
          Length = 96

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 47/94 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  IS + G+ + D    V T   E+  S   G+ + +  F +F +K +  + G
Sbjct: 1  MTKADLVAKISDKLGIEKGDVQATVETFMEEVKTSLESGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN+  N  +KI    +  FK + +  + +  ++ 
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVFLEGVKSNVE 94


>gi|74316025|ref|YP_313765.1| histone-like DNA-binding protein [Thiobacillus denitrificans ATCC
          25259]
 gi|74055520|gb|AAZ95960.1| Histone-like DNA-binding protein [Thiobacillus denitrificans ATCC
          25259]
          Length = 98

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 43/85 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+   + E  +S+  + R +  +   +  +  +G+++ +  F TF   ++ +R G
Sbjct: 1  MNKSELIDFAAAEADISKAAAGRALDAILAAVTKAVAKGDSVTLVGFGTFKSSKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN QT  E+KI    V  F A +  
Sbjct: 61 RNPQTGNEIKIAATTVPRFTAGAGF 85


>gi|51244670|ref|YP_064554.1| DNA-binding protein HU-beta [Desulfotalea psychrophila LSv54]
 gi|50875707|emb|CAG35547.1| probable DNA-binding protein HU-beta [Desulfotalea psychrophila
           LSv54]
          Length = 121

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 58/91 (63%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           + + +S+L++++S++  +  +++     T+ + + ++  +G++I+I  F +F VKQ  S 
Sbjct: 25  ENMNKSELIEALSQDVNIPHREAAAITNTVIDTMTEALAKGDSIEIRGFGSFVVKQYESY 84

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            GRN +T +++K+ P+++  FK    L++++
Sbjct: 85  EGRNPKTGKKIKVKPKKLPFFKVGKDLREQV 115


>gi|295690480|ref|YP_003594173.1| histone family protein DNA-binding protein [Caulobacter segnis
          ATCC 21756]
 gi|295432383|gb|ADG11555.1| histone family protein DNA-binding protein [Caulobacter segnis
          ATCC 21756]
          Length = 92

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +  SDLV + ++ +  L++  +   +  +F  I D+AV+G+ + I  F  F V+ K +R 
Sbjct: 1  MNVSDLVDAAVAADDKLTKTQAKAIIDGVFKSISDAAVKGDEVSIPGFGKFKVQAKPART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN  T   ++I   + V F  +  LK  +  
Sbjct: 61 GRNPATGATIEIAASKKVAFTPAKQLKDAVNG 92


>gi|332881402|ref|ZP_08449052.1| DNA-binding protein HU-beta [Capnocytophaga sp. oral taxon 329
          str. F0087]
 gi|332680778|gb|EGJ53725.1| DNA-binding protein HU-beta [Capnocytophaga sp. oral taxon 329
          str. F0087]
          Length = 107

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 42/70 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I++  GL++ D+ + +    + I ++  +G+ I +  F TF V ++ +R G
Sbjct: 18 MNKTELINAIAENAGLNKADAKKALDATISAISEALKKGDKIALVGFGTFSVNERPARTG 77

Query: 65 RNLQTNQEVK 74
           N +T +++ 
Sbjct: 78 INPRTKEQIT 87


>gi|295690336|ref|YP_003594029.1| histone family protein DNA-binding protein [Caulobacter segnis
          ATCC 21756]
 gi|295432239|gb|ADG11411.1| histone family protein DNA-binding protein [Caulobacter segnis
          ATCC 21756]
          Length = 92

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +  SDLV + ++ E  L++  +   +  +F  + ++AV+GE + I  F  F V+ K +R 
Sbjct: 1  MNVSDLVDAAVAAEPKLTKAQAKALIDGVFKALTEAAVKGEEVSIPGFGKFKVQAKPART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN  T   ++I   + V F  +  LK  +  
Sbjct: 61 GRNPSTGATIEIAASKKVAFTPAKQLKDAVNG 92


>gi|298207122|ref|YP_003715301.1| DNA-binding protein HU [Croceibacter atlanticus HTCC2559]
 gi|83849756|gb|EAP87624.1| DNA-binding protein HU [Croceibacter atlanticus HTCC2559]
          Length = 97

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 50/97 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D+V  I+   G+ + +    V T   E+  S   GE + +  F +F +K++  + G
Sbjct: 1   MTKADIVAKIADRIGMEKNEVQATVETFMEEVKTSLEGGENVYLRGFGSFIIKERAEKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           RN+  N  +KI    +  FK + +  + + +++  +K
Sbjct: 61  RNISKNTTIKIPAHNIPAFKPAKVFMEGVKENVSVKK 97


>gi|296140540|ref|YP_003647783.1| histone family protein DNA-binding protein [Tsukamurella
          paurometabola DSM 20162]
 gi|296028674|gb|ADG79444.1| histone family protein DNA-binding protein [Tsukamurella
          paurometabola DSM 20162]
          Length = 235

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 50/94 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ ++++ G  R+ +   V  + + I  +   G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIEELTEKLGTDRRTAGAAVEAIVDTIVRAVHAGDSVTITGFGVFEQRKRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  I    +
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVISGAAK 94


>gi|228473931|ref|ZP_04058672.1| DNA-binding protein HU [Capnocytophaga gingivalis ATCC 33624]
 gi|228274445|gb|EEK13286.1| DNA-binding protein HU [Capnocytophaga gingivalis ATCC 33624]
          Length = 106

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 47/94 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++V  IS++ G+ + +    V      I DS  +G+ + +  F +F VK +  + G
Sbjct: 1  MTKAEIVAKISEKLGIEKTEVQNVVEHFMEGIKDSLEKGDNVYLRGFGSFIVKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN+  N  + I    +  FK + +  + +   ++
Sbjct: 61 RNISKNTTITIPAHNIPAFKPAKVFVQSVKTKVK 94


>gi|254498715|ref|ZP_05111431.1| integration host factor (IHF) alpha subunit [Legionella
          drancourtii LLAP12]
 gi|254352043|gb|EET10862.1| integration host factor (IHF) alpha subunit [Legionella
          drancourtii LLAP12]
          Length = 97

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            ++++ + +++  E  LS+  S   V   F  +  +   G  +K+S F  F ++ K  R
Sbjct: 2  NALSKAIMAETLCDELKLSKPASKEMVENFFEVLRHALEHGHHVKLSGFGNFTLRDKPQR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           GRN +T +E+ +  RRVV FK+   LK +I +
Sbjct: 62 PGRNPKTGEEIPVVARRVVTFKSGLKLKTKIEE 94


>gi|165932789|ref|YP_001649578.1| DNA-binding protein HU [Rickettsia rickettsii str. Iowa]
 gi|165907876|gb|ABY72172.1| DNA-binding protein HU [Rickettsia rickettsii str. Iowa]
          Length = 139

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 3   KTITRSDLVKSI---------SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53
           K + +++ +  +         +    L++ ++ + +  + + +  +      I I+ F +
Sbjct: 39  KKMNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGS 98

Query: 54  FHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           F +  + +R GRN +T  ++KID      F+A   +K+ 
Sbjct: 99  FEIHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEA 137


>gi|332878124|ref|ZP_08445853.1| putative DNA-binding protein HU-alpha [Capnocytophaga sp. oral
          taxon 329 str. F0087]
 gi|332683862|gb|EGJ56730.1| putative DNA-binding protein HU-alpha [Capnocytophaga sp. oral
          taxon 329 str. F0087]
          Length = 96

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 49/94 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++V  IS + GL + +    V    +E+ +S   G+ + +  F +F +K +  + G
Sbjct: 1  MTKAEIVSKISDKSGLDKNEVQLIVENFMDEVINSLKDGQNVYLRGFGSFIIKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN+  N  +KI    +  FK + +    + D+++
Sbjct: 61 RNISKNTTLKIPAHNIPAFKPAKVFVDTVKDNVK 94


>gi|271969217|ref|YP_003343413.1| histone-like DNA-binding protein [Streptosporangium roseum DSM
           43021]
 gi|270512392|gb|ACZ90670.1| histone-like DNA-binding protein [Streptosporangium roseum DSM
           43021]
          Length = 99

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 3/100 (3%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + + +LV +I+   G  +K +T  V  + + I  +   G+ + I+ F  F +  K +R  
Sbjct: 1   MNKKELVDAIADRVG-DKKTATEAVNAVLDAIQKAVASGDKVSITGFGAFEMVHKPARTA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           RN  T  E+K+       F+  S  K+ +   + G+K  K
Sbjct: 60  RNPSTGAEIKVAESWGPKFRPGSDFKELVN--VEGKKAAK 97


>gi|240128445|ref|ZP_04741106.1| integration host factor subunit beta [Neisseria gonorrhoeae
          SK-93-1035]
          Length = 98

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 10 LVKSISKE--FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          L +  + +    L  KD    V  L + +  S  RG+ I+I  F +F +  + +R+GRN 
Sbjct: 4  LAEVFAAKNGTHLLAKDVEYSVKFLVDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNP 63

Query: 68 QTNQEVKIDPRRVVVFKASSILKKRI 93
          +T + V++  + V  FK    L++R+
Sbjct: 64 KTGERVEVPEKHVPHFKPGKELRERV 89


>gi|307719533|ref|YP_003875065.1| DNA-binding protein HbbU [Spirochaeta thermophila DSM 6192]
 gi|306533258|gb|ADN02792.1| DNA-binding protein HbbU [Spirochaeta thermophila DSM 6192]
          Length = 102

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 55/95 (57%), Gaps = 1/95 (1%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          ++ +T++ +V++IS+   LS+KD    + + F+E+  + V G+ +++  F TF ++ +  
Sbjct: 5  TEKLTKAQIVENISQHCDLSKKDIQFVIDSFFSEVKRALVEGKTVELRGFGTFEIRVRKG 64

Query: 62 R-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          R   RN +T + VK++   V VF+    LK  + +
Sbjct: 65 RDRARNPKTGEIVKVEDHGVAVFRPGKELKDSVWN 99


>gi|315186666|gb|EFU20425.1| histone family protein DNA-binding protein [Spirochaeta
          thermophila DSM 6578]
          Length = 102

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 55/95 (57%), Gaps = 1/95 (1%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          ++ +T++ +V++IS+   LS+KD    + + F+E+  + V G+ +++  F TF ++ +  
Sbjct: 5  TEKLTKAQIVENISQHCDLSKKDIQFVIDSFFSEVKRALVEGKTVELRGFGTFEIRVRKG 64

Query: 62 RV-GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          R   RN +T + VK++   V VF+    LK  + +
Sbjct: 65 RERARNPKTGEIVKVEDHGVAVFRPGKELKDSVWN 99


>gi|58979365|gb|AAW83347.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979379|gb|AAW83354.1| DNA-binding protein HU [Campylobacter coli]
          Length = 96

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 44/85 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+T     + + I D   +G+++    F TF   ++ +R  
Sbjct: 1  MTKADFISQVAQTAGLTKKDATAATDAVISTITDVLAKGDSVSFIGFGTFSTTERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          R   T + +K+   RV  FK    L
Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNL 85


>gi|58979373|gb|AAW83351.1| DNA-binding protein HU [Campylobacter coli]
          Length = 96

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 44/85 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+T     + + I D   +G+++    F TF   ++ +R  
Sbjct: 1  MTKADFISQVAQTAGLTKKDATAATDAVISTITDVLAKGDSVSFIGFGTFSTTERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          R   T + +K+   RV  FK    L
Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNL 85


>gi|308235225|ref|ZP_07665962.1| DNA-binding protein HB1 [Gardnerella vaginalis ATCC 14018]
          Length = 93

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +SDLV  I+++  L++  +   V    +   ++   GE +K++   +    ++  R GR
Sbjct: 4  NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEALQSGEGLKLTGLFSAERVKRAERTGR 63

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N +T + +KI     V   A S+LKK + +
Sbjct: 64 NPRTGETIKIPASYGVRISAGSLLKKAVTE 93


>gi|58979473|gb|AAW83401.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979475|gb|AAW83402.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979477|gb|AAW83403.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979479|gb|AAW83404.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979481|gb|AAW83405.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979483|gb|AAW83406.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979487|gb|AAW83408.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979489|gb|AAW83409.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979491|gb|AAW83410.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979493|gb|AAW83411.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979531|gb|AAW83430.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979533|gb|AAW83431.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979535|gb|AAW83432.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979537|gb|AAW83433.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979539|gb|AAW83434.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979541|gb|AAW83435.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979543|gb|AAW83436.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979545|gb|AAW83437.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979547|gb|AAW83438.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979549|gb|AAW83439.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979551|gb|AAW83440.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979555|gb|AAW83442.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979557|gb|AAW83443.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979559|gb|AAW83444.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979561|gb|AAW83445.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979563|gb|AAW83446.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979565|gb|AAW83447.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979567|gb|AAW83448.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979569|gb|AAW83449.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979575|gb|AAW83452.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979581|gb|AAW83455.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979589|gb|AAW83459.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979593|gb|AAW83461.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979601|gb|AAW83465.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979607|gb|AAW83468.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979609|gb|AAW83469.1| DNA-binding protein HU [Campylobacter upsaliensis]
 gi|58979611|gb|AAW83470.1| DNA-binding protein HU [Campylobacter upsaliensis]
          Length = 98

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 43/85 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+      + + I +   +G++I    F TF   ++ +R  
Sbjct: 1  MTKADFISQVAQNAGLTKKDAGAATDAVISTITEVLAKGDSISFIGFGTFSTTERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          R   T + +K+   RV  FK    L
Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNL 85


>gi|325266084|ref|ZP_08132770.1| DNA-binding protein HU-beta [Kingella denitrificans ATCC 33394]
 gi|324982722|gb|EGC18348.1| DNA-binding protein HU-beta [Kingella denitrificans ATCC 33394]
          Length = 101

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++KE GL++ D+ + V    + +  +    + I +  F TF V ++  R G
Sbjct: 1  MNKSELIDAVAKESGLTKADAAKAVDAFTSVVKTALKADDTITLVGFGTFKVAERAERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T + + I   RV  F     LK  +
Sbjct: 61 LNPKTREAITIPAARVPKFTPGKGLKDAL 89


>gi|224015517|ref|XP_002297410.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220967911|gb|EED86280.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 85

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 44/85 (51%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++ V +++++ G+++ +S   ++ + N I      G+ I +  F TF +  + +R GRN
Sbjct: 1  KAEFVSAVAEKTGMTKAESEVALSAVLNVIATEVAAGKRISLPGFGTFKLNYRAARKGRN 60

Query: 67 LQTNQEVKIDPRRVVVFKASSILKK 91
           +T  E+ I       F AS   K+
Sbjct: 61 PKTGDEIDIKASYSPSFSASKTFKE 85


>gi|261415071|ref|YP_003248754.1| histone family protein DNA-binding protein [Fibrobacter
          succinogenes subsp. succinogenes S85]
 gi|261371527|gb|ACX74272.1| histone family protein DNA-binding protein [Fibrobacter
          succinogenes subsp. succinogenes S85]
 gi|302326666|gb|ADL25867.1| DNA-binding protein HU [Fibrobacter succinogenes subsp.
          succinogenes S85]
          Length = 124

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+  IT+  L++ I+K  G  R D    V    + + +  + G  I+I  F TF  K + 
Sbjct: 1  MAN-ITKQSLIQEIAKSTGFVRNDIKIVVEQFLDLLGEKLIEGNTIEIRGFGTFACKPRK 59

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +R  RN +T + V ID R V  FK S+ +K +I 
Sbjct: 60 ARPARNPRTGETVLIDERLVPTFKFSNDIKDKIN 93


>gi|303258162|ref|ZP_07344170.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
 gi|302859181|gb|EFL82264.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
          Length = 92

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV ++++E G S+ D    +  L  ++  +   G+ I +  F TF   ++ +R G
Sbjct: 1  MNKTELVAAVAEETGKSKADVKEILEALIAQVVKTVKAGDEIALIGFGTFKSAERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T +E+KI       F A  + K  +  
Sbjct: 61 RNPATGKEIKILASIQPKFVAGKMFKDALNG 91


>gi|226197835|ref|ZP_03793409.1| integration host factor, beta subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|254295622|ref|ZP_04963080.1| integration host factor, beta subunit [Burkholderia pseudomallei
           406e]
 gi|157805552|gb|EDO82722.1| integration host factor, beta subunit [Burkholderia pseudomallei
           406e]
 gi|225930023|gb|EEH26036.1| integration host factor, beta subunit [Burkholderia pseudomallei
           Pakistan 9]
          Length = 90

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 23  KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVV 82
           KD+   V T+ + + D+  +G  I+I  F +F + ++ +RVGRN ++ ++V++  + V  
Sbjct: 3   KDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARVGRNPKSGEKVQVPEKHVPH 62

Query: 83  FKASSILKKRIMDDMRGRKCNKDDVTS 109
           FK    L++R+ D   G     D+   
Sbjct: 63  FKPGKELRERV-DGRAGEPLKNDEPED 88


>gi|57504971|ref|ZP_00370923.1| DNA-binding protein HU [Campylobacter coli RM2228]
 gi|305432029|ref|ZP_07401196.1| DNA-binding protein HU [Campylobacter coli JV20]
 gi|57019243|gb|EAL55949.1| DNA-binding protein HU [Campylobacter coli RM2228]
 gi|58979339|gb|AAW83334.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979349|gb|AAW83339.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979351|gb|AAW83340.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979353|gb|AAW83341.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979355|gb|AAW83342.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979357|gb|AAW83343.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979363|gb|AAW83346.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979377|gb|AAW83353.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979393|gb|AAW83361.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979395|gb|AAW83362.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979409|gb|AAW83369.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979413|gb|AAW83371.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979463|gb|AAW83396.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979465|gb|AAW83397.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979467|gb|AAW83398.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979571|gb|AAW83450.1| DNA-binding protein HU [Campylobacter coli]
 gi|58979573|gb|AAW83451.1| DNA-binding protein HU [Campylobacter coli]
 gi|304445113|gb|EFM37759.1| DNA-binding protein HU [Campylobacter coli JV20]
          Length = 96

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 44/85 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+T     + + I D   +G+++    F TF   ++ +R  
Sbjct: 1  MTKADFISQVAQTAGLTKKDATAATDAVISTITDVLAKGDSVSFIGFGTFSTAERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          R   T + +K+   RV  FK    L
Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNL 85


>gi|319952649|ref|YP_004163916.1| histone family protein DNA-binding protein [Cellulophaga algicola
           DSM 14237]
 gi|319421309|gb|ADV48418.1| histone family protein DNA-binding protein [Cellulophaga algicola
           DSM 14237]
          Length = 96

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 49/96 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D+V  IS++ G+ + D    V +   E+  S   G+ + +  F +F +K +  + G
Sbjct: 1   MTKADIVTRISEKLGIEKGDVQATVESFMEEVKYSLENGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RN+  N  +KI    +  FK + +  + +  ++  +
Sbjct: 61  RNISKNTTIKIPAHNIPSFKPAKVFVESVKSNVEVK 96


>gi|146299294|ref|YP_001193885.1| histone family protein DNA-binding protein [Flavobacterium
           johnsoniae UW101]
 gi|146153712|gb|ABQ04566.1| histone family protein DNA-binding protein [Flavobacterium
           johnsoniae UW101]
          Length = 96

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 48/96 (50%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D+V  IS++ GL + D    V T   E+  S   G+ + +  F +F VK +  + G
Sbjct: 1   MTKADIVAKISEKLGLEKGDVQATVETFMEEVKTSLETGDNVYLRGFGSFIVKTRAEKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RN+  N  +KI    +  FK + +  + +  +   +
Sbjct: 61  RNISKNTTIKIPAHNIPAFKPAKVFVEGVKTNNEAK 96


>gi|329889322|ref|ZP_08267665.1| DNA-binding protein HU 1 [Brevundimonas diminuta ATCC 11568]
 gi|328844623|gb|EGF94187.1| DNA-binding protein HU 1 [Brevundimonas diminuta ATCC 11568]
          Length = 91

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L+  +++  G+SR  +   +    +++  S V+G  +++  F +F    + + V 
Sbjct: 1  MTKTELIGRMAEAAGISRDQAKLALEAFTDQVTGSLVQGRDVRLVGFGSFVAVDRKAGVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT +E+     R   F+    LK  +  
Sbjct: 61 RNPQTGEEIARPASRTARFRPGEGLKSALNG 91


>gi|303257169|ref|ZP_07343183.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
 gi|331000812|ref|ZP_08324458.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT
           11859]
 gi|302860660|gb|EFL83737.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
 gi|329570340|gb|EGG52073.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT
           11859]
          Length = 105

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 46/100 (46%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++++++++ E GL++ +  + +    + I  +   G    +  F  F+  Q+ +R G
Sbjct: 1   MNKTEMIEAVASETGLAKTEVAKVLNAYTDTIVKTVAEGGEYTVIGFGKFYASQRQARTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           RN  T  E+KI    V  F A    K  +    +  +  +
Sbjct: 61  RNPSTGVEIKIPAAMVPKFTAGKAFKDAVNAPKKPARKGR 100


>gi|319951158|ref|ZP_08025003.1| histone family protein DNA-binding protein [Dietzia cinnamea P4]
 gi|319435174|gb|EFV90449.1| histone family protein DNA-binding protein [Dietzia cinnamea P4]
          Length = 126

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 40/91 (43%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  ++   G   + +T  +    + I  +   GE+I I  F  F  K + +RV 
Sbjct: 1  MNKADLIAELADRMGGDHQLATEALENTLDIIVRTVASGESITIMGFGIFEKKARAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T + + + P    VF+     K  I  
Sbjct: 61 RNPHTGESIPVPPTYSPVFRPGQYFKSVIQG 91


>gi|110004904|emb|CAK99236.1| probable dna-binding protein hu2 [Spiroplasma citri]
          Length = 94

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 2/94 (2%)

Query: 5  ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +++ +L   I+++F   LS+  +      +F+ I  + V G+ + I+ F  F V ++ +R
Sbjct: 1  MSKKELAAQIAEKFTDVLSKTHAEEITNFVFDHIKKALVAGKEVSIAGFGKFAVTERAAR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           GRN  T + +KI   +   FKA   LK  + ++
Sbjct: 61 DGRNPSTGETIKIPASKSAKFKAGKQLKTDLNNN 94


>gi|295098884|emb|CBK87973.1| Bacterial nucleoid DNA-binding protein [Eubacterium cylindroides
          T2-87]
          Length = 96

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 47/95 (49%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K + R  L + +     +S+KD++  +  +FNE+ +S      + IS F  F +  + 
Sbjct: 1  MAKFVNRESLAQVLCDNLNISKKDASYAIELIFNEMSESLASDGYVDISGFGKFEIFFRK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R+G N  T + + I   ++  F+ S  LK +  +
Sbjct: 61 ERMGINPVTKERIMIPATKLPKFRPSQTLKNKCNN 95


>gi|326804607|ref|YP_004327478.1| DNA binding protein [Salmonella phage Vi01]
 gi|301795257|emb|CBW37975.1| DNA binding protein [Salmonella phage Vi01]
          Length = 92

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R+D +  I++  G+++ ++ + V +  N +  +   G++++   F  F VK + +R G
Sbjct: 1  MNRTDFIAHIAQTQGMTKGEAEKIVASFINGVKTAVAAGQSVQFVGFGAFEVKHQEARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN    Q ++I+ + VV FK    LK     
Sbjct: 61 RNPLNGQAIQIEAKNVVKFKVGEGLKAAANG 91


>gi|150025716|ref|YP_001296542.1| histone-like DNA-binding protein HU-alpha [Flavobacterium
          psychrophilum JIP02/86]
 gi|149772257|emb|CAL43733.1| Histone-like bacterial DNA-binding protein HU-alpha
          [Flavobacterium psychrophilum JIP02/86]
          Length = 98

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 48/95 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  IS++ GL + D    V T   E+ +S   G+ + +  F +F VK +  + G
Sbjct: 1  MTKADIVAKISEKLGLEKGDVQATVETFMEEVKNSLETGDNVYLRGFGSFIVKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          RN+  N  +KI    +  FK + +  + +  +   
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVFVEGVKTNNEA 95


>gi|120437894|ref|YP_863580.1| histone-like DNA-binding protein [Gramella forsetii KT0803]
 gi|117580044|emb|CAL68513.1| histone-like bacterial DNA-binding protein [Gramella forsetii
           KT0803]
          Length = 96

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 51/96 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D+V +IS++ G+ + D    + +  +E+  S   G+ + +  F +F VK +  + G
Sbjct: 1   MTKADIVANISEKLGMEKGDVQATIESFMDEVKTSLESGDNVYLRGFGSFVVKTRAEKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RN+  N  +KI    +  FK + I  + +  ++  +
Sbjct: 61  RNISKNTTIKIPAHNIPAFKPAKIFVEGVKSNVEVK 96


>gi|113969892|ref|YP_733685.1| histone family protein DNA-binding protein [Shewanella sp. MR-4]
 gi|113884576|gb|ABI38628.1| histone family protein DNA-binding protein [Shewanella sp. MR-4]
          Length = 91

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L++ I+     S+  +   V  +  +I  +   GE + +  F TF ++    + G
Sbjct: 1  MNKAQLIQRIATSLEQSQASTKPVVEQILQQIHIALSEGEKVFLPQFGTFELRYHLPKSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + ++I       FKA++ LK+ I +
Sbjct: 61 RNPQTGETIEIAGFNQPSFKAATALKQAINE 91


>gi|328953615|ref|YP_004370949.1| histone family protein DNA-binding protein [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453939|gb|AEB09768.1| histone family protein DNA-binding protein [Desulfobacca
           acetoxidans DSM 11109]
          Length = 98

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 56/96 (58%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++ LV+ + ++  LS+ ++ + V  +F  I  +    E + IS F  + VK K  R G
Sbjct: 3   LTKASLVQVLFEKEILSKAEAAKVVDAVFRIIKQTLAEKEDVLISGFGKWLVKTKKERRG 62

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RN QT Q++ ID RRVV F+AS +L++ I  +   R
Sbjct: 63  RNPQTGQDLTIDARRVVTFRASGVLRRLINQEPSSR 98


>gi|330996516|ref|ZP_08320398.1| DNA-binding protein HU-beta [Paraprevotella xylaniphila YIT
          11841]
 gi|329573072|gb|EGG54691.1| DNA-binding protein HU-beta [Paraprevotella xylaniphila YIT
          11841]
          Length = 107

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 42/70 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I++  GL++ D+ + +    + I ++  +G+ I +  F TF V ++ +R G
Sbjct: 18 MNKTELINAIAENAGLNKTDAKKALDATISAISEALKKGDKIALVGFGTFSVSERPARTG 77

Query: 65 RNLQTNQEVK 74
           N +T +++ 
Sbjct: 78 INPRTKEQIT 87


>gi|228911465|ref|ZP_04075263.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
 gi|228848211|gb|EEM93067.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
          Length = 84

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 8/90 (8%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K +  +  L++  ++  V  +   I  +    E +++ SF TF V+++ +R G
Sbjct: 1  MNKSELIKQVIIQSELTKPQASLVVDAVLESIQHALQNREHVQLLSFGTFEVRERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T + + I             LK+ + 
Sbjct: 61 RNPHTGEALTIPA--------GKSLKEAVK 82


>gi|320352188|ref|YP_004193527.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
 gi|320120690|gb|ADW16236.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
          Length = 95

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + + +LV  +S++ G   ++D  + V  +  EI  +      ++I  F +F V+ +  R 
Sbjct: 1  MLKRELVNQVSEQLGDYYKQDIAQAVEIILEEISQALAEERRVEIRGFGSFSVRTRKPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           +N +T + + I  R+ + F  S  LK+ ++D++ 
Sbjct: 61 TKNPKTGKMMNIPARKTLHFTMSKSLKEVLIDEVE 95


>gi|56551140|ref|YP_161979.1| histone family protein DNA-binding protein [Zymomonas mobilis
          subsp. mobilis ZM4]
 gi|241761496|ref|ZP_04759584.1| histone family protein DNA-binding protein [Zymomonas mobilis
          subsp. mobilis ATCC 10988]
 gi|260753209|ref|YP_003226102.1| histone family protein DNA-binding protein [Zymomonas mobilis
          subsp. mobilis NCIMB 11163]
 gi|56542714|gb|AAV88868.1| histone family protein DNA-binding protein [Zymomonas mobilis
          subsp. mobilis ZM4]
 gi|241374403|gb|EER63900.1| histone family protein DNA-binding protein [Zymomonas mobilis
          subsp. mobilis ATCC 10988]
 gi|258552572|gb|ACV75518.1| histone family protein DNA-binding protein [Zymomonas mobilis
          subsp. mobilis NCIMB 11163]
          Length = 91

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  +DLV  I+   GL++ D+ + V  +F+ I D+AV GE I ++ F  F VK   +R G
Sbjct: 1  MNSNDLVDRIASGQGLTKTDAKKLVDAVFSTIVDAAVAGEEIALNGFGKFKVKHSAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T QE++I     + F ++  +K R+ 
Sbjct: 61 HNPATLQEIEIPASNRLTFTSAKAVKDRLN 90


>gi|311114526|ref|YP_003985747.1| DNA-binding protein HU [Gardnerella vaginalis ATCC 14019]
 gi|310946020|gb|ADP38724.1| DNA-binding protein HU [Gardnerella vaginalis ATCC 14019]
          Length = 105

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
            +SDLV  I+++  L++  +   V    +   ++   GE +K++   +    ++  R GR
Sbjct: 16  NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEALQSGEGLKLTGLFSAERVKRAERTGR 75

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T + +KI     V   A S+LKK + +
Sbjct: 76  NPRTGETIKIPASYGVRISAGSLLKKAVTE 105


>gi|78355564|ref|YP_387013.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
 gi|78217969|gb|ABB37318.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
          Length = 97

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 52/95 (54%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           KT+T++D+V +I ++   +R +    V +L   +  +  +  A+ IS F  F    K +
Sbjct: 3  GKTLTKADIVDAIYEKTERNRAEVKNVVESLLGIMKQAIKKDHALLISGFGKFEAYDKKA 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          R GRN QT++ + + PR+VVVF+ S   +  +  +
Sbjct: 63 RKGRNPQTDETITLPPRKVVVFRLSRKFRAELNGE 97


>gi|291613626|ref|YP_003523783.1| histone family protein DNA-binding protein [Sideroxydans
          lithotrophicus ES-1]
 gi|291583738|gb|ADE11396.1| histone family protein DNA-binding protein [Sideroxydans
          lithotrophicus ES-1]
          Length = 98

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TRS+L++ ++     L+  D    V  + ++I         ++I  F TF    +  R 
Sbjct: 1  MTRSELIQQLASRHPELTSNDIEMSVRLILDKISSVLENKARVEIRGFGTFATLHRPPRN 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          G N +T + VK+  + V  F+A   L+ R+ 
Sbjct: 61 GHNPKTGKVVKVPAKYVPHFRAGKELRVRVN 91


>gi|303326346|ref|ZP_07356789.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3]
 gi|302864262|gb|EFL87193.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3]
          Length = 122

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 52/94 (55%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           M KT+T++D+V++I +E   +R D    V  L   +  +  +  A+ IS F  F    K 
Sbjct: 28  MKKTLTKADIVEAIYEETDKNRVDVKNVVEQLLEIMKTAIKKDRALLISGFGKFECYDKA 87

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           SR GRN QT++ + + PR+V+VF+ S   +  + 
Sbjct: 88  SRKGRNPQTDETITLPPRKVMVFRLSRKFRSELN 121


>gi|167042006|gb|ABZ06742.1| putative bacterial DNA-binding protein [uncultured marine
          microorganism HF4000_141F21]
          Length = 91

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  LV  IS    L++ D+ R    +   I +     E +KI+ F T+ V ++ +RVG
Sbjct: 1  MNKKQLVAKISSSMNLNKADAERTFDGITEIILNCLKNDEQVKIAGFGTYKVAKRKARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T ++++I   + V F  +  LK+    
Sbjct: 61 RNPRTGEQIQIAASQKVKFLPAKALKEMFNK 91


>gi|315499784|ref|YP_004088587.1| histone family protein DNA-binding protein [Asticcacaulis
          excentricus CB 48]
 gi|315417796|gb|ADU14436.1| histone family protein DNA-binding protein [Asticcacaulis
          excentricus CB 48]
          Length = 92

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 45/90 (50%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+++LV +I+ + GL+++ + + V    + + D+  +GE +++  F TF   ++ +   R
Sbjct: 3  TKAELVAAIADQAGLTKEQAKKAVDAFTDSVVDALKKGEEVRLVGFGTFLAVKREAGTAR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N +T + V         F+    LK  +  
Sbjct: 63 NPRTGETVSRPASVTARFRVGEGLKNALNG 92


>gi|116515125|ref|YP_802754.1| HimD [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|122285479|sp|Q057N8|IHFB_BUCCC RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|116256979|gb|ABJ90661.1| integration host factor beta-subunit [Buchnera aphidicola str. Cc
          (Cinara cedri)]
          Length = 97

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L + I+++   +  K     V  +   +  S  +G  I+I  F +F +  + +R+
Sbjct: 1  MIKSELFERITEKKTYIPAKIIEYVVKNILEYMSLSLEKGNRIEIRGFGSFSLHYRFARI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T ++V +  + V  FK    L+ RI +
Sbjct: 61 GRNPKTGEKVYLKEKYVPHFKPGKQLRDRINN 92


>gi|332520146|ref|ZP_08396610.1| histone family protein DNA-binding protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332044705|gb|EGI80899.1| histone family protein DNA-binding protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 96

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 49/96 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++DLV  IS++ G+ + D    V T   E+  S   G+ + +  F +F +K +  + G
Sbjct: 1   MTKADLVAKISEKLGIEKGDVQATVETFMEEVKTSLEAGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RN+  N  +KI    +  FK + +  + +  ++  +
Sbjct: 61  RNISKNTTIKIPAHNIPAFKPAKVFVEGVKTNVDVK 96


>gi|218777981|ref|YP_002429299.1| histone family protein DNA-binding protein [Desulfatibacillum
          alkenivorans AK-01]
 gi|218759365|gb|ACL01831.1| histone family protein DNA-binding protein [Desulfatibacillum
          alkenivorans AK-01]
          Length = 95

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+ D+V+ I    G ++K+S   V  L   I DS   G+ + IS F  F +KQK  R 
Sbjct: 2  ALTKCDIVEKIYD-MGFTKKESVDVVEQLIEIIKDSLQEGDDVLISGFGKFCIKQKDQRR 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN  T +++ +  R+VV FK S  L+  I D   
Sbjct: 61 GRNPATGKDLMLRERKVVTFKCSGKLRDLINDSQE 95


>gi|94264269|ref|ZP_01288063.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|94266795|ref|ZP_01290460.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|94268979|ref|ZP_01291342.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|93451393|gb|EAT02249.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|93452538|gb|EAT03124.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|93455314|gb|EAT05521.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
          Length = 97

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 59/95 (62%), Gaps = 1/95 (1%)

Query: 1  MSKT-ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          M++  +TR DL K+I+++ G S++ +   V  +F ++ D+ +  E IK+  F TF+V+ K
Sbjct: 1  MNRANLTRKDLAKAINEQMGFSQRSAADLVDVVFEQLKDTLMAEEPIKLVQFGTFNVRHK 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            R GRN +T   ++I  R ++ F+ S I+++RI 
Sbjct: 61 SPRQGRNPRTGDPMEITKRSMISFRPSKIVRERIN 95


>gi|298245978|ref|ZP_06969784.1| histone family protein DNA-binding protein [Ktedonobacter racemifer
           DSM 44963]
 gi|297553459|gb|EFH87324.1| histone family protein DNA-binding protein [Ktedonobacter racemifer
           DSM 44963]
          Length = 142

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 47/94 (50%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           ++TI R +L + I+K+  LS+K ++  +    + I ++   G+ +++  F +F V+    
Sbjct: 48  AQTIGRQELSRRIAKQAKLSQKQASEVLEATLDSIREALQNGDEVRLVGFGSFKVRTSAE 107

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R G N +  +E+ +  +  V F     L + +  
Sbjct: 108 RKGVNPRDGKEIVVPAKERVRFSPGKELSEAVEK 141


>gi|295136313|ref|YP_003586989.1| histone-like DNA-binding protein [Zunongwangia profunda SM-A87]
 gi|294984328|gb|ADF54793.1| histone-like DNA-binding protein [Zunongwangia profunda SM-A87]
          Length = 96

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 50/96 (52%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D+V +IS++ G+ + D    + T   E+  S   G+ + +  F +F VK +  + G
Sbjct: 1   MTKADIVANISEKLGMEKGDVQATIETFMEEVKSSLESGDNVYLRGFGSFVVKTRAEKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RN+  N  +KI    +  FK + I  + +  ++  +
Sbjct: 61  RNISKNTTIKIPAHNIPAFKPAKIFVEGVKSNVDVK 96


>gi|126662500|ref|ZP_01733499.1| DNA-binding protein HU [Flavobacteria bacterium BAL38]
 gi|126625879|gb|EAZ96568.1| DNA-binding protein HU [Flavobacteria bacterium BAL38]
          Length = 97

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 48/94 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  IS++ GL + D    V T   E+ +S   G+ + +  F +F +K +  + G
Sbjct: 1  MTKADIVAKISEKLGLEKGDVQATVETFMEEVKNSLETGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN+  N  +KI    +  FK + +  + + +   
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVFVESVKEKTE 94


>gi|148550652|ref|YP_001260091.1| histone family protein DNA-binding protein [Sphingomonas wittichii
           RW1]
 gi|148503071|gb|ABQ71324.1| histone family protein DNA-binding protein [Sphingomonas wittichii
           RW1]
          Length = 134

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 2   SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           +  + RS+LV  +  +   LS ++  + V   F  + D    G  +++  F  F  +   
Sbjct: 14  APAMVRSELVALLGKENPELSAQEIEKIVDLFFEAVVDQLAAGGRVELRGFGAFLTRLHE 73

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           +R GRN ++   V +  +R V FK    +++R+
Sbjct: 74  ARTGRNPRSGLAVPVPAKRSVHFKPGKAMRERL 106


>gi|117925353|ref|YP_865970.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
 gi|117609109|gb|ABK44564.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
          Length = 91

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 52/89 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+ +++++  L ++ +   V  +FNE+  +  +GE +++  F  F  + +  R  
Sbjct: 1  MTKSELILAVAEQNTLHKQSAVMVVDMVFNELGKALAKGERVELRGFGVFEPRARKPRTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T ++V ++ +  V FK    +++R+
Sbjct: 61 RNPKTGKKVNVESKTAVHFKPGLDMRRRV 89


>gi|317154134|ref|YP_004122182.1| histone family protein DNA-binding protein [Desulfovibrio
          aespoeensis Aspo-2]
 gi|316944385|gb|ADU63436.1| histone family protein DNA-binding protein [Desulfovibrio
          aespoeensis Aspo-2]
          Length = 92

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 5  ITRSDLVKSISKE--FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + +S+L+ ++ +    G S+    + V    + I +   + + + I+ F +F       R
Sbjct: 1  MNKSELMDAVFERRTTGFSKCHVEKAVNDALDIIAEQLAKSDKVVITGFGSFEAVTTAPR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +GRN    + V+I   + + FK    LK+ + 
Sbjct: 61 LGRNPHNGEAVQIPAGKKIKFKPGKALKEAVK 92


>gi|163753443|ref|ZP_02160567.1| DNA-binding protein HU [Kordia algicida OT-1]
 gi|161327175|gb|EDP98500.1| DNA-binding protein HU [Kordia algicida OT-1]
          Length = 96

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 50/96 (52%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D+V  IS++ G+ + D    V T   E+ +S   G+ + +  F +F +K +  + G
Sbjct: 1   MTKADIVAKISEKLGMEKGDVQATVETFMEEVKNSLESGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RN+  N  +KI    +  FK + +  + +  ++  +
Sbjct: 61  RNISKNTTIKIPAHNIPAFKPAKVFVEGVKSNVEVK 96


>gi|331001163|ref|ZP_08324791.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis
          YIT 11859]
 gi|329569251|gb|EGG51040.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis
          YIT 11859]
          Length = 92

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 43/90 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV ++++  G  + D    +  L  +I  +   G+ + +  F TF   ++ +RVG
Sbjct: 1  MNKTELVATVAEVSGKPKADVKEVLEALLGQIIKTVKSGDEVTLVGFGTFKSAKREARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T  E+KI       F A  + K  + 
Sbjct: 61 RNPATGAELKIPASIQPKFVAGKLFKDALN 90


>gi|283783178|ref|YP_003373932.1| DNA-binding protein HU [Gardnerella vaginalis 409-05]
 gi|283441069|gb|ADB13535.1| DNA-binding protein HU [Gardnerella vaginalis 409-05]
          Length = 93

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 44/88 (50%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +SDLV  I+++  L++  +   V    +   ++   GE +K++   +    ++  R GR
Sbjct: 4  NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEALQSGEGLKLTGLFSAERVKRAERTGR 63

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93
          N +T + +KI     V   A S+LKK +
Sbjct: 64 NPRTGETIKIPASYGVRISAGSLLKKAV 91


>gi|320534610|ref|ZP_08035057.1| DNA-binding protein HU [Actinomyces sp. oral taxon 171 str.
          F0337]
 gi|325068381|ref|ZP_08127054.1| histone family protein DNA-binding protein [Actinomyces oris K20]
 gi|326773734|ref|ZP_08233017.1| DNA-binding protein HU [Actinomyces viscosus C505]
 gi|329947427|ref|ZP_08294631.1| DNA-binding protein HU-alpha [Actinomyces sp. oral taxon 170 str.
          F0386]
 gi|320133176|gb|EFW25677.1| DNA-binding protein HU [Actinomyces sp. oral taxon 171 str.
          F0337]
 gi|326636964|gb|EGE37867.1| DNA-binding protein HU [Actinomyces viscosus C505]
 gi|328525177|gb|EGF52228.1| DNA-binding protein HU-alpha [Actinomyces sp. oral taxon 170 str.
          F0386]
          Length = 93

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 53/92 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R++L+ +I+++ GL++ D+  F+    + + ++  +GEA+KI+        ++ +R 
Sbjct: 2  SVNRTELIAAIAEKAGLTKTDADAFLGAFQDVLVENVAKGEAVKITGLMGIERVERAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +E++I     V     S LKK + +
Sbjct: 62 GRNPRTGEEIQIPAGYGVKVTVGSSLKKAVAE 93


>gi|257454892|ref|ZP_05620143.1| integration host factor, beta subunit [Enhydrobacter aerosaccus
          SK60]
 gi|257447825|gb|EEV22817.1| integration host factor, beta subunit [Enhydrobacter aerosaccus
          SK60]
          Length = 98

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 1  MSKTITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          M K + +SDL+  +S E   +  K        + + + D+  +   +++  F +F +  +
Sbjct: 1  MEKVLNKSDLITRLSSECENIPEKTIEEATKQIIDLMVDTLSQNGRVEVRGFGSFSLHHR 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            RV RN +T ++V +    +  FK    L++ + 
Sbjct: 61 EPRVARNPKTGEKVTVKATAIPHFKPGKALREAVN 95


>gi|16126570|ref|NP_421134.1| DNA-binding protein HU [Caulobacter crescentus CB15]
 gi|221235352|ref|YP_002517789.1| DNA-binding protein HU [Caulobacter crescentus NA1000]
 gi|13423856|gb|AAK24302.1| DNA-binding protein HU [Caulobacter crescentus CB15]
 gi|220964525|gb|ACL95881.1| DNA-binding protein HU [Caulobacter crescentus NA1000]
          Length = 92

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +  SDLV + ++ +  L++  +   +  +F  I D+AV+GE + I  F  F V+ K +R 
Sbjct: 1  MNVSDLVDAAVAADEKLTKTQAKAIIDGVFKSISDAAVKGEEVSIPGFGKFKVQAKPART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN  T   ++I   + V F  +  LK  +  
Sbjct: 61 GRNPATGATIEIAASKKVGFTPAKQLKDAVNG 92


>gi|325285938|ref|YP_004261728.1| histone family protein DNA-binding protein [Cellulophaga lytica DSM
           7489]
 gi|324321392|gb|ADY28857.1| histone family protein DNA-binding protein [Cellulophaga lytica DSM
           7489]
          Length = 96

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 49/96 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D+V  IS + G+ + D    V T   E+  S   G+ + +  F +F +K +  + G
Sbjct: 1   MTKADIVSKISDKLGIEKGDVQATVETFMEEVKTSLENGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RN+  N  +KI    +  FK + +  + +  +++ +
Sbjct: 61  RNISKNTTIKIPAHNIPAFKPAKVFVEGVKSNVQVK 96


>gi|254456178|ref|ZP_05069607.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter
          sp. HTCC7211]
 gi|207083180|gb|EDZ60606.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter
          sp. HTCC7211]
          Length = 91

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 50/87 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  L+  +S    +S+ D+ R   T+ N I D+    +++KI+ F T+ V ++ +RVG
Sbjct: 1  MNKKQLIAQLSGSLNMSKADAERTFDTITNTILDALKGDDSVKIAGFGTYKVAKRKARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T ++++I   + V F  +  LK+
Sbjct: 61 RNPRTGEQIQIAASQKVKFLPAKALKE 87


>gi|160883569|ref|ZP_02064572.1| hypothetical protein BACOVA_01541 [Bacteroides ovatus ATCC 8483]
 gi|156110982|gb|EDO12727.1| hypothetical protein BACOVA_01541 [Bacteroides ovatus ATCC 8483]
          Length = 88

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K ++ +  LS  ++T  V  +   I ++  +GE++ +  F +F ++++ +R G
Sbjct: 1  MNKSELIKEVALKGQLSFNEATNAVDAIMETIAETMHKGESVTLVGFGSFVIQERKARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N  T   + I  +R V F+  S +K
Sbjct: 61 HNPATGGSMVIPSKRQVKFRPGSKMK 86


>gi|71083518|ref|YP_266237.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter
          ubique HTCC1062]
 gi|91762063|ref|ZP_01264028.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter
          ubique HTCC1002]
 gi|71062631|gb|AAZ21634.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter
          ubique HTCC1062]
 gi|91717865|gb|EAS84515.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter
          ubique HTCC1002]
          Length = 91

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 49/87 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  L+  +S    LS+ D+ R   T+ N I D+    + +KI+ F T+ V ++ +RVG
Sbjct: 1  MNKKQLIAQLSGSLNLSKADAERTFDTITNTILDALKGDDTVKIAGFGTYKVAKRKARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T ++++I   + V F  +  LK+
Sbjct: 61 RNPRTGEQIQIGASQKVKFLPAKALKE 87


>gi|3334159|sp|P73418|DBH_SYNY3 RecName: Full=DNA-binding protein HU
          Length = 100

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 48/100 (48%), Gaps = 6/100 (6%)

Query: 5   ITRSDLVKSISKEF------GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
           + + +LV +++ +        +++K+    ++   + I +    GE + +  F +F  ++
Sbjct: 1   MNKGELVHAVTDKAKEQLGESITKKEVDAVISAAIDCIMEVVAEGEKVTLVGFGSFEARE 60

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           +  R GRN +T  ++ I   +V  F A  + K ++  + +
Sbjct: 61  RKEREGRNPKTGDKMLIPATKVPAFSAGKMFKDKVAPEKK 100


>gi|167042078|gb|ABZ06813.1| putative bacterial DNA-binding protein [uncultured marine
          microorganism HF4000_141I21]
          Length = 91

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  LV  IS    L++ D+ R    +   I +     E +KI+ F T+ V ++ +RVG
Sbjct: 1  MNKKQLVAKISSSMNLNKADAERTFDGITEIILNCLKSDEQVKIAGFGTYKVAKRKARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T ++++I   + V F  +  LK+    
Sbjct: 61 RNPRTGEQIQIAASQKVKFLPAKALKEMFNK 91


>gi|58979335|gb|AAW83332.1| DNA-binding protein HU [Campylobacter coli]
          Length = 96

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 44/85 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+T     + + I D   +G+++    F TF   ++ +R  
Sbjct: 1  MTKADFISQVAQTAGLTKKDATAATDAVISTITDVLTKGDSVSFIGFGTFSTAERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          R   T + +K+   RV  FK    L
Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNL 85


>gi|262277180|ref|ZP_06054973.1| integration host factor subunit alpha (IHF-alpha) [alpha
          proteobacterium HIMB114]
 gi|262224283|gb|EEY74742.1| integration host factor subunit alpha (IHF-alpha) [alpha
          proteobacterium HIMB114]
          Length = 95

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 55/95 (57%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS  +TR DL     KE G+S+ +  +FV  +F  I  +   G  +K+S F +F VK K 
Sbjct: 1  MSNNVTRQDLYDLTYKELGISKNECIKFVDLVFESILKNFEEGNKVKVSLFGSFDVKDKK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +R+GRN +T +E +I  RRVV FK S  L K+I  
Sbjct: 61 ARIGRNPKTKEEKEISSRRVVTFKPSKFLSKKINK 95


>gi|161870175|ref|YP_001599345.1| integration host factor subunit beta [Neisseria meningitidis
          053442]
 gi|161595728|gb|ABX73388.1| integration host factor beta-subunit [Neisseria meningitidis
          053442]
          Length = 95

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 10 LVKSISKE--FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          + +  + +    L  KD    V  L + +  S  RG+ I+I  F +F +  + +R+GRN 
Sbjct: 1  MAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNP 60

Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          +T + V++  + V  FK    L++R+   ++
Sbjct: 61 KTGERVEVPEKHVPHFKPGKELRERVDLALK 91


>gi|283852456|ref|ZP_06369725.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          FW1012B]
 gi|303249426|ref|ZP_07335647.1| histone family protein DNA-binding protein [Desulfovibrio
          fructosovorans JJ]
 gi|283572194|gb|EFC20185.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          FW1012B]
 gi|302489168|gb|EFL49139.1| histone family protein DNA-binding protein [Desulfovibrio
          fructosovorans JJ]
          Length = 100

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 50/95 (52%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           KT+T++D+V  I ++   +R +    V  L   +  S  +  ++ +S F  F    K +
Sbjct: 3  GKTLTKADIVDYIYEKTERNRAEVKVLVDHLLELMKQSIKKDHSLLVSGFGKFESYDKKA 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          R GRN QTN+ + + PR+VVVF+ S   +  +  D
Sbjct: 63 RKGRNPQTNESIMLPPRKVVVFRLSRKFRAELNPD 97


>gi|213963105|ref|ZP_03391363.1| DNA-binding protein HU [Capnocytophaga sputigena Capno]
 gi|213954189|gb|EEB65513.1| DNA-binding protein HU [Capnocytophaga sputigena Capno]
          Length = 116

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 45/87 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++++V  IS + GL R D    V    +E+ +S   G+ + +  F +F +K +  + G
Sbjct: 20  MTKAEIVSKISDKLGLDRNDVQLTVENFMDEVINSLESGQNVYLRGFGSFIIKTRAEKTG 79

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN+  N  +KI    +  FK + +  +
Sbjct: 80  RNISKNTTIKIPAHNIPAFKPAKVFVE 106


>gi|86143784|ref|ZP_01062160.1| DNA-binding protein HU [Leeuwenhoekiella blandensis MED217]
 gi|85829827|gb|EAQ48289.1| DNA-binding protein HU [Leeuwenhoekiella blandensis MED217]
          Length = 98

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 49/93 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  IS++ G+ + D    V T   E+ +S   G+ + +  F +F +K +  + G
Sbjct: 1  MTKADIVAKISEKLGIEKNDVQATVETFMTEVKNSLEGGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          RN+  N  +KI    +  FK + +  + +  ++
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVFVEGVKSNV 93


>gi|260175099|ref|ZP_05761511.1| putative histone-like DNA-binding protein [Bacteroides sp. D2]
 gi|315923329|ref|ZP_07919569.1| HU family DNA-binding protein [Bacteroides sp. D2]
 gi|313697204|gb|EFS34039.1| HU family DNA-binding protein [Bacteroides sp. D2]
          Length = 88

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 47/86 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K ++ +  LS +++   +  + + I ++  +GE I +  F +F ++++  R G
Sbjct: 1  MNKTELIKEVALKGKLSFREAGYALDVIIDTITETMQKGENITLVGFGSFVIQERKERNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N  T   + I  +R V F+  S ++
Sbjct: 61 HNPSTGGSMVIPAKRQVKFRPGSKMR 86


>gi|24373428|ref|NP_717471.1| HU family DNA-binding protein [Shewanella oneidensis MR-1]
 gi|24347706|gb|AAN54915.1|AE015629_9 DNA-binding protein, HU family [Shewanella oneidensis MR-1]
          Length = 91

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L++ I+     S+  +   V  +  +I  +   GE + +  F TF ++    + G
Sbjct: 1  MNKAQLIQRIATSLEQSQASTKPVVEQILQQIHIALSEGEKVFLPLFGTFELRYHLPKSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + ++I       FKA++ LK+ I +
Sbjct: 61 RNPQTGEAIEIAGFNQPSFKAATALKQAINE 91


>gi|319758735|gb|ADV70677.1| nucleoid DNA-binding protein [Streptococcus suis JS14]
          Length = 89

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 39/69 (56%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  +++   L++KDS   V  +F  + D    GE +++  F  F V+++ +R GR
Sbjct: 3  NKQDLIAKVAEATSLTKKDSAAAVDAVFGAVADYLAAGEKVQLIGFGNFEVRERSARTGR 62

Query: 66 NLQTNQEVK 74
          N QT  E+K
Sbjct: 63 NPQTGAEIK 71


>gi|307825166|ref|ZP_07655387.1| histone family protein DNA-binding protein [Methylobacter
          tundripaludum SV96]
 gi|307733914|gb|EFO04770.1| histone family protein DNA-binding protein [Methylobacter
          tundripaludum SV96]
          Length = 103

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S L+  ++K+   L RK+    V  +  ++  + +  + I+I  F +F +       
Sbjct: 1  MTKSKLIDLLAKKWPHLERKEVELAVGCMIEQMSKALMANDRIEIRGFGSFSLHYHPPFT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T  E+K+  R    FK    L++R+
Sbjct: 61 GRNPRTGAELKLQARYSPYFKPGRELRQRV 90


>gi|51473371|ref|YP_067128.1| DNA-binding protein HU [Rickettsia typhi str. Wilmington]
 gi|81692317|sp|Q68XJ6|DBH_RICTY RecName: Full=DNA-binding protein HU
 gi|51459683|gb|AAU03646.1| DNA-binding protein HU [Rickettsia typhi str. Wilmington]
          Length = 99

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 44/97 (45%), Gaps = 9/97 (9%)

Query: 5  ITRSDLVKSISKEFG---------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55
          + +++ +  +++            L++ D+ + +  + + +  +      + ++ F +F 
Sbjct: 1  MNKTEFIAYMTEHCHNNKHAAHKTLTKADAEKALNLVIDSVISAIKSKHNVNLTGFGSFE 60

Query: 56 VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          +  + +R GRN +T  ++ ID      F+A   LK+ 
Sbjct: 61 IHHRKAREGRNPKTGAKMTIDAYNQPTFRAGRKLKEA 97


>gi|326336370|ref|ZP_08202541.1| integration host factor subunit alpha [Capnocytophaga sp. oral
          taxon 338 str. F0234]
 gi|325691544|gb|EGD33512.1| integration host factor subunit alpha [Capnocytophaga sp. oral
          taxon 338 str. F0234]
          Length = 105

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 43/85 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++V  IS++ G+ + +    V     EI  S  +G+ + +  F +F VK +  + G
Sbjct: 1  MTKAEIVAKISEKLGIEKTEVQNTVEHFMEEIKASLEKGDNVYLRGFGSFIVKARAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  + I    +  FK + + 
Sbjct: 61 RNISKNTTITIPAHNIPAFKPAKVF 85


>gi|313159521|gb|EFR58884.1| DNA-binding protein HU-beta [Alistipes sp. HGB5]
          Length = 86

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 50/85 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV++I+ +  +S+ D+ + V  +      S   GE + ++   TF V+QK +RVG
Sbjct: 1  MNKAQLVEAIALDANISKIDARKAVDAIIRVTVQSLREGERLTLTGLGTFSVQQKAARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN +T+  VKI PR+ V F+ +  L
Sbjct: 61 RNPRTSAAVKIPPRKAVKFRPTIEL 85


>gi|329120185|ref|ZP_08248854.1| HU family DNA-binding protein [Neisseria bacilliformis ATCC
          BAA-1200]
 gi|327463337|gb|EGF09657.1| HU family DNA-binding protein [Neisseria bacilliformis ATCC
          BAA-1200]
          Length = 97

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 43/92 (46%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +TI +++LVK  +    +S   + R +  L + +      G  + I+ F TF  + K  R
Sbjct: 5  QTIHKTELVKQAAALSDISTAAAARLIDNLLDTVKTHLRNGFKVSITDFGTFEAQSKPER 64

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT + + I     V FKA   LK  + 
Sbjct: 65 SGRNPQTGEAITIAAHMAVKFKAGKALKDAVN 96


>gi|297569511|ref|YP_003690855.1| histone family protein DNA-binding protein [Desulfurivibrio
          alkaliphilus AHT2]
 gi|296925426|gb|ADH86236.1| histone family protein DNA-binding protein [Desulfurivibrio
          alkaliphilus AHT2]
          Length = 92

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + + DL+ ++++E  G  +KD  + +  +   I  +      ++I  F +F V+++ +R 
Sbjct: 1  MLKRDLINAVAEEMPGFLKKDLDQALDIMLENILQALEDNRRVEIRGFGSFSVRERKART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           +N +T + + I PR+ V F  S  LK  ++D
Sbjct: 61 TKNPRTGKVMHIPPRKNVHFTMSKSLKDGLID 92


>gi|307295340|ref|ZP_07575179.1| histone family protein DNA-binding protein [Sphingobium
          chlorophenolicum L-1]
 gi|306878843|gb|EFN10062.1| histone family protein DNA-binding protein [Sphingobium
          chlorophenolicum L-1]
          Length = 91

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  ++L ++++ + GL++ D+ ++V  +F  I  +A +G+ + ++ F  F VK + +R G
Sbjct: 1  MNNTELAEALAADHGLTKADARKYVDGVFAAIAGAAAKGDEVSLNGFGKFKVKDQPAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T   ++I   + + F  +  +K ++  
Sbjct: 61 RNPSTGAVIQIAASKKLTFTPAKAVKDQLNG 91


>gi|162148585|ref|YP_001603046.1| DNA binding protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787162|emb|CAP56754.1| putative DNA binding protein [Gluconacetobacter diazotrophicus
          PAl 5]
          Length = 97

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 44/88 (50%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          +DLV  I+    +S+ D+ + +  L   +  +A  G+ I + +F  F V++  +R GRN 
Sbjct: 10 ADLVDHIATTTDISKTDTRKVLDALVEAMTAAAKAGDEITLPNFGKFKVREVAAREGRNP 69

Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95
           T   ++I   R + F  +  LK  + D
Sbjct: 70 ATGATIQIAASRKLAFTPAKALKDSLND 97


>gi|301061080|ref|ZP_07201877.1| putative DNA-binding protein HRL53 [delta proteobacterium NaphS2]
 gi|300444874|gb|EFK08842.1| putative DNA-binding protein HRL53 [delta proteobacterium NaphS2]
          Length = 95

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/94 (37%), Positives = 56/94 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT++ L+ ++ ++  L +K +T  V +LF  I  + V GE + IS F  F VK K  R 
Sbjct: 2  TITKNKLIDAVDEKTELPKKTATSAVESLFEIIKRTLVSGEDVLISGFGKFVVKDKKKRK 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN +T + + +D RR+V FK S+ L+ ++ D  
Sbjct: 62 GRNPETGKGLILDARRIVSFKCSNKLRDKMNDSH 95


>gi|19918954|dbj|BAB88690.1| histone-like HU protein HBl [Bifidobacterium longum biovar
          Longum]
          Length = 93

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 46/90 (51%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +SDLV  I+++  L++  +   V    +   ++   GE +K++   +    ++ +R GR
Sbjct: 4  NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRPARTGR 63

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N +T +++ I     V   A S+LKK + +
Sbjct: 64 NPRTGEQIDIPASYGVRISAGSLLKKAVTE 93


>gi|301059179|ref|ZP_07200119.1| integration host factor subunit alpha [delta proteobacterium
          NaphS2]
 gi|300446727|gb|EFK10552.1| integration host factor subunit alpha [delta proteobacterium
          NaphS2]
          Length = 94

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 53/91 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  ++ SI  + GLS+  S      L   I ++   GE + IS F  F VK+K SR 
Sbjct: 2  ALTKEKIIDSIYHQVGLSKSQSRAAAEGLLEIIKETLENGEDLLISGFGKFLVKEKASRR 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN QT +++++  RRVVVFK S +L+ +I 
Sbjct: 62 GRNPQTTEDLQLRARRVVVFKTSGVLRDKIN 92


>gi|117920062|ref|YP_869254.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3]
 gi|117612394|gb|ABK47848.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3]
          Length = 91

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L++ I+     S+  +   V  +  +I  +   GE + +  F TF ++    + G
Sbjct: 1  MNKAQLIQRIATSLEQSQASTRPVVEQILQQIHIALSEGEKVFLPQFGTFELRYHLPKSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + ++I       FKA++ LK+ I +
Sbjct: 61 RNPQTGETMEIAGFNQPSFKAATALKQAINE 91


>gi|281425612|ref|ZP_06256525.1| DNA-binding protein HU [Prevotella oris F0302]
 gi|299140824|ref|ZP_07033962.1| DNA-binding protein HU [Prevotella oris C735]
 gi|281400199|gb|EFB31030.1| DNA-binding protein HU [Prevotella oris F0302]
 gi|298577790|gb|EFI49658.1| DNA-binding protein HU [Prevotella oris C735]
          Length = 97

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 50/96 (52%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +   + +  ++   G ++ D+ + V TL   + DS   GE + ++ F TF VK++  RV 
Sbjct: 1   MNNKEFIAELALRSGYTQADAQKLVNTLIEGMGDSFEAGENVSLTGFGTFEVKKRMERVV 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
            N  T   + + P+ V+ FK ++ +K+++ +   G 
Sbjct: 61  VNPSTGMRMLVPPKLVLGFKPNASIKEKLKNGGDGN 96


>gi|305666098|ref|YP_003862385.1| DNA-binding protein HU [Maribacter sp. HTCC2170]
 gi|88707532|gb|EAQ99775.1| DNA-binding protein HU [Maribacter sp. HTCC2170]
          Length = 96

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 49/96 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++++V  IS + G+ + D    V +   E+  S   G+ + +  F +F +K +  + G
Sbjct: 1   MTKAEIVSKISDKLGIEKGDVQATVESFMEEVKTSLESGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RN+  N  +KI    +  FK + +  + +  +++ +
Sbjct: 61  RNISKNTTIKIPAHNIPAFKPAKVFVEGVKSNVQVK 96


>gi|319763435|ref|YP_004127372.1| histone family protein DNA-binding protein [Alicycliphilus
           denitrificans BC]
 gi|330824318|ref|YP_004387621.1| histone family protein DNA-binding protein [Alicycliphilus
           denitrificans K601]
 gi|317117996|gb|ADV00485.1| histone family protein DNA-binding protein [Alicycliphilus
           denitrificans BC]
 gi|329309690|gb|AEB84105.1| histone family protein DNA-binding protein [Alicycliphilus
           denitrificans K601]
          Length = 111

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 46/100 (46%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + R+ LV+ ++ +  LS+  +   + TL   I  +  +G+ +++  F TF   ++ +R G
Sbjct: 12  MNRAQLVEILASKNDLSKTAANAVLETLTETIQTAVKKGDTVQLVGFGTFKSAKRAARTG 71

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           +N  T   +KI    V  F   +  K  +      RK  K
Sbjct: 72  KNPATGAALKIPASTVPKFVPGAKFKAVVDPKAAKRKAGK 111


>gi|225010184|ref|ZP_03700656.1| histone family protein DNA-binding protein [Flavobacteria bacterium
           MS024-3C]
 gi|225005663|gb|EEG43613.1| histone family protein DNA-binding protein [Flavobacteria bacterium
           MS024-3C]
          Length = 96

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 48/96 (50%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D+V  IS++ G+ + D    V     E+  S   G+ + +  F +F +K +  + G
Sbjct: 1   MTKADIVTKISEKLGIEKGDIQATVEAFMEEVKTSLESGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RN+  N  +KI    +  FK + +  + +  ++  +
Sbjct: 61  RNISKNTTIKIPAHNIPAFKPAKVFVEGVKSNVNVK 96


>gi|23335497|ref|ZP_00120732.1| COG0776: Bacterial nucleoid DNA-binding protein [Bifidobacterium
          longum DJO10A]
 gi|23466342|ref|NP_696945.1| DNA-binding protein HU [Bifidobacterium longum NCC2705]
 gi|189440838|ref|YP_001955919.1| nucleoid DNA-binding protein [Bifidobacterium longum DJO10A]
 gi|213691575|ref|YP_002322161.1| histone family protein DNA-binding protein [Bifidobacterium
          longum subsp. infantis ATCC 15697]
 gi|227546710|ref|ZP_03976759.1| DNA-binding protein HU [Bifidobacterium longum subsp. infantis
          ATCC 55813]
 gi|239620686|ref|ZP_04663717.1| DNA-binding protein Hu [Bifidobacterium longum subsp. infantis
          CCUG 52486]
 gi|296454624|ref|YP_003661767.1| histone family protein DNA-binding protein [Bifidobacterium
          longum subsp. longum JDM301]
 gi|312132302|ref|YP_003999641.1| hima [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481730|ref|ZP_07940762.1| bacterial DNA-binding protein [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689691|ref|YP_004209425.1| DNA-binding protein [Bifidobacterium longum subsp. infantis 157F]
 gi|322691653|ref|YP_004221223.1| DNA-binding protein [Bifidobacterium longum subsp. longum JCM
          1217]
 gi|24212656|sp|P17615|DBH1_BIFLO RecName: Full=DNA-binding protein HB1
 gi|23327099|gb|AAN25581.1| DNA-binding protein Hu [Bifidobacterium longum NCC2705]
 gi|189429273|gb|ACD99421.1| Bacterial nucleoid DNA-binding protein [Bifidobacterium longum
          DJO10A]
 gi|213523036|gb|ACJ51783.1| histone family protein DNA-binding protein [Bifidobacterium
          longum subsp. infantis ATCC 15697]
 gi|227212672|gb|EEI80553.1| DNA-binding protein HU [Bifidobacterium longum subsp. infantis
          ATCC 55813]
 gi|239516262|gb|EEQ56129.1| DNA-binding protein Hu [Bifidobacterium longum subsp. infantis
          CCUG 52486]
 gi|291516247|emb|CBK69863.1| Bacterial nucleoid DNA-binding protein [Bifidobacterium longum
          subsp. longum F8]
 gi|296184055|gb|ADH00937.1| histone family protein DNA-binding protein [Bifidobacterium
          longum subsp. longum JDM301]
 gi|311773444|gb|ADQ02932.1| HimA [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916844|gb|EFV38234.1| bacterial DNA-binding protein [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456509|dbj|BAJ67131.1| DNA-binding protein [Bifidobacterium longum subsp. longum JCM
          1217]
 gi|320457663|dbj|BAJ68284.1| DNA-binding protein [Bifidobacterium longum subsp. infantis ATCC
          15697]
 gi|320461027|dbj|BAJ71647.1| DNA-binding protein [Bifidobacterium longum subsp. infantis 157F]
          Length = 93

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 46/90 (51%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +SDLV  I+++  L++  +   V    +   ++   GE +K++   +    ++ +R GR
Sbjct: 4  NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTGR 63

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N +T +++ I     V   A S+LKK + +
Sbjct: 64 NPRTGEQIDIPASYGVRISAGSLLKKAVTE 93


>gi|171060236|ref|YP_001792585.1| histone family protein DNA-binding protein [Leptothrix cholodnii
          SP-6]
 gi|170777681|gb|ACB35820.1| histone family protein DNA-binding protein [Leptothrix cholodnii
          SP-6]
          Length = 131

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ ++K+  LS+ ++ R + T+ + +  +  +G A+ +  F +F    + +R G
Sbjct: 1  MNKAELIEVLAKQHTLSKAEAARILATVLDTVVATVKKGGAVTLPGFGSFKQHARAARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T  ++KI   ++  F   +  K  +
Sbjct: 61 VNPGTGDKIKIAAVKLPKFTPGTAFKAAV 89


>gi|302339671|ref|YP_003804877.1| histone family protein DNA-binding protein [Spirochaeta smaragdinae
           DSM 11293]
 gi|301636856|gb|ADK82283.1| histone family protein DNA-binding protein [Spirochaeta smaragdinae
           DSM 11293]
          Length = 117

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 2/106 (1%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
              +T++++++ I ++  ++R D    +  LF E+ D+  +   +++  F TF ++ +  
Sbjct: 12  GNKLTKAEIIERIYEKHEVNRSDIHDVIDALFEELKDALQQDRVVELRGFGTFEIRTRKG 71

Query: 62  R-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           R   RN +T + V ++   V VF+    LK +I   +RG      D
Sbjct: 72  RDRARNPKTGEIVPVNTHGVAVFRPGKELK-QIAWPLRGENGGSGD 116


>gi|241764993|ref|ZP_04762990.1| histone family protein DNA-binding protein [Acidovorax
          delafieldii 2AN]
 gi|241365427|gb|EER60214.1| histone family protein DNA-binding protein [Acidovorax
          delafieldii 2AN]
          Length = 103

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R++LV+ ++ +  LS+  +   + TL + I  +  +G  +++  F TF   ++ +R G
Sbjct: 1  MNRAELVEILASKNDLSKAAANAVLETLIDTIQTAVKKGNPVQLVGFGTFKSAKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +N  T   +KI    V  F A +  K  +
Sbjct: 61 KNPATGAALKIPASTVPKFVAGAKFKAVV 89


>gi|296533342|ref|ZP_06895945.1| DNA-binding protein HU [Roseomonas cervicalis ATCC 49957]
 gi|296266332|gb|EFH12354.1| DNA-binding protein HU [Roseomonas cervicalis ATCC 49957]
          Length = 98

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 49/94 (52%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          ++ ++R DLV + +    L +  +   +  +   + D+   G  ++++ F +F V ++ +
Sbjct: 5  TRPLSRQDLVDAAAAATSLPKTQADAVLKAVLAAVGDALGAGREVRLAGFGSFAVSERAA 64

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          R GRN  T + V+I   + V FK +  LK R+ +
Sbjct: 65 RQGRNPATGEVVQIAASKSVKFKPAKDLKTRLGE 98


>gi|308271404|emb|CBX28012.1| DNA-binding protein HU-alpha [uncultured Desulfobacterium sp.]
          Length = 88

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRV 63
          +T+++LV   +++ G+S+  +   + ++ + I  +  + +  + +  F TF   ++ +R 
Sbjct: 1  MTKAELVDKAAEDAGISKTAAAATLNSIMDSIAKTLKKKDGKVTLVGFGTFTKVRRKARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
          GRN QT + +KI    VV F+    L++
Sbjct: 61 GRNPQTGEPIKIKACTVVKFRPGKKLRE 88


>gi|223039759|ref|ZP_03610044.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Campylobacter rectus RM3267]
 gi|222878951|gb|EEF14047.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Campylobacter rectus RM3267]
          Length = 100

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D +++++++ GLS+KDS + V      I  + V G+++    F TF    + +R  
Sbjct: 1  MKKADFIQAVAEKAGLSKKDSLKVVDAALEVIESALVAGDSVSFIGFGTFGTADRAARKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R   T + + +   + V FK    LK+ +
Sbjct: 61 RVPGTKKVIDVPASKAVKFKVGKKLKEAV 89


>gi|167621831|ref|YP_001676616.1| histone family protein DNA-binding protein [Caulobacter sp. K31]
 gi|167351572|gb|ABZ74302.1| histone family protein DNA-binding protein [Caulobacter sp. K31]
          Length = 92

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +  SDL+ + ++ E  L++  +   +  +F  +  +AV+GE I I  F  F V+ K +R 
Sbjct: 1  MNVSDLIDAAVAAEPKLTKAQAKAIIDGVFKSLTAAAVKGEEISIPGFGKFKVQAKPART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN  T   ++I   + V F  +  LK  +  
Sbjct: 61 GRNPATGGTIQIAASKKVAFTPAKQLKDAVNG 92


>gi|76798122|ref|ZP_00780376.1| HU like DNA-binding protein [Streptococcus agalactiae 18RS21]
 gi|76586530|gb|EAO63034.1| HU like DNA-binding protein [Streptococcus agalactiae 18RS21]
          Length = 85

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 46/85 (54%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          L+  +++   L++KDS   V  +F  + D    GE +++  F  F V+++ +R GRN QT
Sbjct: 1  LIAKVAEATELTKKDSAAAVDAVFAAVADYLAEGEKVQLIGFGNFEVRERAARKGRNPQT 60

Query: 70 NQEVKIDPRRVVVFKASSILKKRIM 94
            E++I   +V  FKA   LK  + 
Sbjct: 61 GAEIEIAASKVPAFKAGKALKDAVK 85


>gi|329890586|ref|ZP_08268929.1| DNA-binding protein HRm [Brevundimonas diminuta ATCC 11568]
 gi|328845887|gb|EGF95451.1| DNA-binding protein HRm [Brevundimonas diminuta ATCC 11568]
          Length = 92

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+++L+ +++K+ G+S+ D+ + +T +   I  S   G  ++IS+   F   ++  R GR
Sbjct: 3  TQAELIAAVAKDAGVSQADAGKVLTAIVENIHKSLKSGGDVRISNLGVFDTAERAEREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N  T   +KI   + V F+ S  LK  +  
Sbjct: 63 NPATGATIKIPASKAVRFRVSKPLKDAVNG 92


>gi|121582539|ref|YP_974071.1| histone family protein DNA-binding protein [Acidovorax sp. JS42]
 gi|309783318|ref|ZP_07678028.1| DNA-binding protein, HU family [Ralstonia sp. 5_7_47FAA]
 gi|330827371|ref|YP_004390609.1| histone family protein DNA-binding protein [Alicycliphilus
          denitrificans K601]
 gi|120608597|gb|ABM44336.1| histone family protein DNA-binding protein [Acidovorax sp. JS42]
 gi|308917862|gb|EFP63549.1| DNA-binding protein, HU family [Ralstonia sp. 5_7_47FAA]
 gi|329312679|gb|AEB87093.1| histone family protein DNA-binding protein [Alicycliphilus
          denitrificans K601]
          Length = 91

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R DL+ +I+++   S+  +TRF+ +L   + +   +G A+K++ F TF      +R G
Sbjct: 1  MNRQDLIDAIAEDTEASKAATTRFLDSLITIVQNEVAKGGAVKLTGFGTFEKAAVAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T   +KI       F   +  K  + D
Sbjct: 61 RNPKTGAPIKIPSTHKPKFTPGATFKDLVKD 91


>gi|320528538|ref|ZP_08029695.1| DNA-binding protein HU [Solobacterium moorei F0204]
 gi|320131124|gb|EFW23697.1| DNA-binding protein HU [Solobacterium moorei F0204]
          Length = 96

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 51/92 (55%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K +T+  L   +++++GL++K +   V  +F+EI  +  +G  + ++ F  F V +K +R
Sbjct: 5  KVVTKKTLADDLAEKYGLTKKAAGEAVNYVFDEIATTIKKGGEVSLNGFGKFTVVKKKAR 64

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           G N  T +++KI   +   FKAS  LK  + 
Sbjct: 65 TGLNPATGEKIKIKATKAPKFKASKTLKDLVK 96


>gi|167645770|ref|YP_001683433.1| histone family protein DNA-binding protein [Caulobacter sp. K31]
 gi|167348200|gb|ABZ70935.1| histone family protein DNA-binding protein [Caulobacter sp. K31]
          Length = 92

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +  SDLV + ++ +  L++  +   +  +F  + ++AV+GE + I  F  F V+ K +R 
Sbjct: 1  MNVSDLVDAAVAADDKLTKTQAKALIDGVFKSLTEAAVKGEEVSIPGFGKFKVQAKPART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN  T   ++I   + V F  +  LK  +  
Sbjct: 61 GRNPSTGAAIEIAASKKVAFTPAKQLKDAVNG 92


>gi|83858753|ref|ZP_00952275.1| Histone-like DNA-binding protein [Oceanicaulis alexandrii
          HTCC2633]
 gi|83853576|gb|EAP91428.1| Histone-like DNA-binding protein [Oceanicaulis alexandrii
          HTCC2633]
          Length = 88

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 50/87 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L K+I+ + G+++  ++  +    + I  +A   ++++++ F TFH K + +R  
Sbjct: 1  MNKSELAKAIADKAGITKAQASDAIDAFADAIVGAAKSNDSVQLAGFGTFHAKHREAREV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T +++    +  + F+ +S LK 
Sbjct: 61 RNPRTGEKMMSKAKTQLAFRPASALKD 87


>gi|299117325|emb|CBN75285.1| DNA-binding protein HU [Ectocarpus siliculosus]
          Length = 161

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 36/87 (41%)

Query: 11  VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTN 70
           V++I++   L +  +   +    + +      G  I +  F TF  + +  R GRN +T 
Sbjct: 73  VEAIAERSNLDKNQAEAALAAFTDVVMQEVADGNKISLQGFGTFEGRARKGRTGRNPRTG 132

Query: 71  QEVKIDPRRVVVFKASSILKKRIMDDM 97
           +E+KI       F AS   K  +    
Sbjct: 133 EELKIKATTAPAFSASKAFKDMVKAAH 159


>gi|291457432|ref|ZP_06596822.1| DNA-binding protein HU [Bifidobacterium breve DSM 20213]
 gi|291381267|gb|EFE88785.1| DNA-binding protein HU [Bifidobacterium breve DSM 20213]
          Length = 93

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 45/90 (50%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +SDLV  I+++  L++  +   V    +   ++   GE +K++   +    ++ +R GR
Sbjct: 4  NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTGR 63

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N +T + + I     V   A S+LKK + +
Sbjct: 64 NPRTGETINIPASYGVRISAGSLLKKAVTE 93


>gi|94266275|ref|ZP_01289980.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|93453126|gb|EAT03597.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
          Length = 93

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + + DL+ ++++E  G  +KD  + V  +   I ++      ++I  F +F V+++ +R 
Sbjct: 1  MLKRDLINAVAEEMPGFLKKDLDQAVDIMLESILEALEENRRVEIRGFGSFSVRERKART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           +N +T + + I PR+ V F  S  LK  ++ 
Sbjct: 61 TKNPRTGKVMHIPPRKNVHFTMSKSLKDGLIK 92


>gi|47459316|ref|YP_016178.1| nucleoid DNA-binding protein HU [Mycoplasma mobile 163K]
 gi|47458646|gb|AAT27967.1| bacterial nucleoid DNA-binding protein HU [Mycoplasma mobile 163K]
          Length = 108

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 49/92 (53%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           + IT+ DL+ +I++    S+K+    V     EI    V  + I +SSF  F + ++ +R
Sbjct: 16  QIITKKDLIATIAENQNKSKKEVEEIVNAFLEEISSELVADKKINLSSFGIFEISERAAR 75

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            G N +T++ ++I   + V FK S  LK ++ 
Sbjct: 76  SGINPKTSEIIQIKATKSVKFKVSKSLKDQVN 107


>gi|319942541|ref|ZP_08016851.1| integration host factor subunit beta [Sutterella wadsworthensis
           3_1_45B]
 gi|319803944|gb|EFW00862.1| integration host factor subunit beta [Sutterella wadsworthensis
           3_1_45B]
          Length = 102

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 1   MSKTITRSDLVKSISKEFGLSR-KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           M  ++T+S+L+  +       R +D       + + +  + V G  I+I  F +F +K +
Sbjct: 1   MGNSMTKSELLAELYGRLPTFRERDCMDAAGVIIDTMSQTLVEGGRIEIRGFGSFGLKYR 60

Query: 60  GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
             RVGRN Q    V +  R  V FKA   L++R+      +
Sbjct: 61  PERVGRNPQDGSAVAVRARYTVFFKAGKDLRQRVDASRDSK 101


>gi|302560391|ref|ZP_07312733.1| DNA-binding protein HU [Streptomyces griseoflavus Tu4000]
 gi|302478009|gb|EFL41102.1| DNA-binding protein HU [Streptomyces griseoflavus Tu4000]
          Length = 93

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV +++    ++RKD+   +      + D   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDIVSKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           RN QT + ++I     V   A S LK+ 
Sbjct: 61 ARNPQTGEPIQIPAGYSVKVSAGSKLKEA 89


>gi|188996798|ref|YP_001931049.1| histone family protein DNA-binding protein [Sulfurihydrogenibium
          sp. YO3AOP1]
 gi|188931865|gb|ACD66495.1| histone family protein DNA-binding protein [Sulfurihydrogenibium
          sp. YO3AOP1]
          Length = 92

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 52/91 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S+L+   +++ G+++  + R V      +  +  +GE + I     F+VKQ+ +R G
Sbjct: 1  MTKSELISKTAEKAGITKAAAERAVNAAIEAVVGALSKGERVAIPGLGVFNVKQRKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T +E+ I  R+VV F A+  LK+ +  
Sbjct: 61 RNPRTGKEITIPARKVVAFTAAKSLKEGLNK 91


>gi|57242219|ref|ZP_00370158.1| hup protein [Campylobacter upsaliensis RM3195]
 gi|57016899|gb|EAL53681.1| hup protein [Campylobacter upsaliensis RM3195]
 gi|58979437|gb|AAW83383.1| DNA-binding protein HU [Campylobacter upsaliensis]
          Length = 98

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 42/85 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++   L++KD+      + + I +   +G++I    F TF   ++ +R  
Sbjct: 1  MTKADFISQVAQNAELTKKDAGAATDAVISTITEVLAKGDSISFIGFGTFSTTERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          R   T + +K+   RV  FK    L
Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNL 85


>gi|37522993|ref|NP_926370.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421]
 gi|35213996|dbj|BAC91365.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421]
          Length = 96

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 50/95 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +++K+  L++KD    V   F+ I ++  RG+ + +  F +F  +++ +R G
Sbjct: 1  MNKGELVDAVAKKAKLAKKDVDAIVGAAFDVIVEAVSRGDKVTLVGFGSFEPRKRAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          RN +T +++ I    V  F A    ++ +    + 
Sbjct: 61 RNPKTREKMTIAATTVPAFSAGKQFREAVSGSAQA 95


>gi|195940565|ref|ZP_03085947.1| transcriptional regulator HU subunit beta [Escherichia coli
          O157:H7 str. EC4024]
          Length = 74

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 39/73 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + +S   G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60

Query: 65 RNLQTNQEVKIDP 77
          RN QT +E+ I  
Sbjct: 61 RNPQTGKEITIAA 73


>gi|94266544|ref|ZP_01290230.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
 gi|93452819|gb|EAT03345.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
          MLMS-1]
          Length = 93

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + + DL+ ++++E  G  +KD  + V  +   I ++      ++I  F +F V+++ +R 
Sbjct: 1  MLKRDLINAVAEEMPGFLKKDLDQAVDIMLESILEALEDNRRVEIRGFGSFSVRERKART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           +N +T + + I PR+ V F  S  LK  ++ 
Sbjct: 61 TKNPRTGKVMHIPPRKNVHFTMSKSLKDGLIK 92


>gi|311898514|dbj|BAJ30922.1| putative DNA-binding protein Hu [Kitasatospora setae KM-6054]
          Length = 226

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++++++ G  RK +   V  + + +  + V G+ + ++ F TF   ++ +R  
Sbjct: 1   MNKAQLVEAVAEQLG-GRKAAAEAVDAVLDTMVRAVVAGDRVSVTGFGTFEKVERSARFA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           RN QT + VK+    V  F+     K  +    +  K       +P GS
Sbjct: 60  RNPQTGERVKVKKTAVPRFRPGQGFKDLVSGSKKLPKDGPSVKKAPKGS 108


>gi|86749688|ref|YP_486184.1| histone-like DNA-binding protein [Rhodopseudomonas palustris HaA2]
 gi|86572716|gb|ABD07273.1| Histone-like DNA-binding protein [Rhodopseudomonas palustris HaA2]
          Length = 103

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T   L  ++++E  LS+K +   +  L   I     +GE I+I       V+++ +R 
Sbjct: 14  TVTLKHLAAALAEEHELSKKQTEAILGDLVGRITKHLKKGERIRIVGLGILQVRKRAART 73

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN  T + ++I   + V F+A+  LK+ I
Sbjct: 74  GRNPATGETIQIKASKKVAFRAAKELKEAI 103


>gi|331000500|ref|ZP_08324173.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis
          YIT 11859]
 gi|329571488|gb|EGG53172.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis
          YIT 11859]
          Length = 92

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 43/90 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV ++++  G  + D    +  L  +I  +   G+ + +  F TF   ++ +RVG
Sbjct: 1  MNKTELVTAVAEVSGKPKADVKEVLEALMGQIIKTVKSGDEVALVGFGTFKSAKREARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T  E+KI       F A  + K  + 
Sbjct: 61 RNPATGAELKIPASIQPKFVAGKLFKDALN 90


>gi|227495757|ref|ZP_03926068.1| DNA-binding protein HU [Actinomyces urogenitalis DSM 15434]
 gi|226834686|gb|EEH67069.1| DNA-binding protein HU [Actinomyces urogenitalis DSM 15434]
          Length = 93

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 51/92 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R++L+ +I+++ GL++ D+  F+      + ++  +GEA+KI+        ++ +R 
Sbjct: 2  SVNRTELIAAIAEKAGLTKTDADAFLGAFQEVLVENVAKGEAVKITGLMGVERVERAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +E++I     V     S LKK +  
Sbjct: 62 GRNPRTGEEIQIPAGYGVKLTVGSALKKAVAK 93


>gi|313238132|emb|CBY13230.1| unnamed protein product [Oikopleura dioica]
          Length = 91

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 5  ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + +++L+ +I    G   +++ +   +  + + I     + + ++I  F TF VK++ +R
Sbjct: 1  MNKAELIDAIQAALGKDATKRAADEALEAVLSSIAKGVKKDKKVQIIGFGTFEVKKRAAR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
           GRN +T + +KI   + V FKASS+LK
Sbjct: 61 TGRNPKTGEAMKIAASKSVGFKASSVLK 88


>gi|186471029|ref|YP_001862347.1| histone family protein DNA-binding protein [Burkholderia phymatum
          STM815]
 gi|184197338|gb|ACC75301.1| histone family protein DNA-binding protein [Burkholderia phymatum
          STM815]
          Length = 124

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 3/93 (3%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS---SFATFHVKQKGS 61
          + + +L+ +++   G S+  +   +  +   +  +  RGE I++     F +F    +  
Sbjct: 1  MNKQELIDAVAASTGESKASTGEALDAILEAVTSAVTRGETIQLIQLIGFGSFSTGARLE 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          R GRNL T   + I   + V F A     + + 
Sbjct: 61 RTGRNLSTGDTITIAAAKTVKFTAGKSFMEAVN 93


>gi|114569526|ref|YP_756206.1| histone family protein DNA-binding protein [Maricaulis maris
          MCS10]
 gi|114339988|gb|ABI65268.1| histone family protein DNA-binding protein [Maricaulis maris
          MCS10]
          Length = 88

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 47/87 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL K+++++ GLSR  +   V +    I  S    ++++I+ F TF+ K + +R  
Sbjct: 1  MNKSDLAKAVAEKTGLSRAQAGEAVDSAIEAIVGSVKGNDSVQIAGFGTFYAKHREAREV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T + +    R    F+ ++ LK 
Sbjct: 61 RNPRTGETMMSKARTQAAFRPAAALKD 87


>gi|294629628|ref|ZP_06708188.1| DNA-binding protein HU [Streptomyces sp. e14]
 gi|302551775|ref|ZP_07304117.1| integration host factor, alpha subunit [Streptomyces
          viridochromogenes DSM 40736]
 gi|292832961|gb|EFF91310.1| DNA-binding protein HU [Streptomyces sp. e14]
 gi|302469393|gb|EFL32486.1| integration host factor, alpha subunit [Streptomyces
          viridochromogenes DSM 40736]
          Length = 93

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV +++    ++RKD+   +    + + D   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAAFADVVGDIVSKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           RN QT + ++I     V   A S LK+ 
Sbjct: 61 ARNPQTGEPIQIPAGYSVKVSAGSKLKEA 89


>gi|229182102|ref|ZP_04309394.1| DNA-binding protein HU 1 [Bacillus cereus 172560W]
 gi|228601353|gb|EEK58882.1| DNA-binding protein HU 1 [Bacillus cereus 172560W]
          Length = 93

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 52/92 (56%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + I +++L K ++++  L +KD      T+ + I  +   GE ++I  F TF V+++ +R
Sbjct: 2  QKINKTELTKVVAEKTELIQKDPVAATQTVLDTITSALANGEKVQILGFGTFEVRERSAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E++I   +   FKA   LK+ + 
Sbjct: 62 TGRNPQTGEEMQIAASKASAFKAGKELKEAVK 93


>gi|224373120|ref|YP_002607492.1| non-specific DNA-binding protein [Nautilia profundicola AmH]
 gi|223589367|gb|ACM93103.1| non-specific DNA-binding protein [Nautilia profundicola AmH]
          Length = 91

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++++ GLS+KD    +      + ++   G+ +    F +F V  +  RV 
Sbjct: 1  MKKSELIAAVAEKSGLSKKDVNAVIDATIEAMEEALKAGKKVSFIGFGSFEVVTRAPRVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          R   TN+EVKI   + V FK    LK+ +  
Sbjct: 61 RVPGTNKEVKIPETKSVKFKVGKKLKELLNK 91


>gi|189425274|ref|YP_001952451.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
 gi|189421533|gb|ACD95931.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
          Length = 95

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 42/87 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV  +++  GL++  + + + +    +  +   G+ + +  F TF    + +R G
Sbjct: 1  MKKSELVAKMAEGAGLTKAQAEKALASFIAGVTGALTAGDKVTLVGFGTFSAITRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN QT + +KI  +    F     LK 
Sbjct: 61 RNPQTGKAIKIAAKTSGKFSPGKSLKD 87


>gi|187736379|ref|YP_001878491.1| histone family protein DNA-binding protein [Akkermansia
          muciniphila ATCC BAA-835]
 gi|187426431|gb|ACD05710.1| histone family protein DNA-binding protein [Akkermansia
          muciniphila ATCC BAA-835]
          Length = 89

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 5  ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + ++ L++ I  + G   ++K +   +  +   I +       ++I  F TF  K + +R
Sbjct: 1  MNKAQLIELIQSKLGADTTKKHAEEALAAVLESIKEGVKESGKVQIIGFGTFATKTREAR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKK 91
           GRN +T   + I   + V FKASS LK 
Sbjct: 61 TGRNPKTGNTINIPASKTVAFKASSALKD 89


>gi|186683346|ref|YP_001866542.1| histone family protein DNA-binding protein [Nostoc punctiforme
          PCC 73102]
 gi|186465798|gb|ACC81599.1| histone family protein DNA-binding protein [Nostoc punctiforme
          PCC 73102]
          Length = 91

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +++ +  +++K +   ++   + + ++   G+ + +  F +F  +++  R G
Sbjct: 1  MNKGELVDAVAAKTNITKKQADEVISAFLSVVTEAVANGDKVTLVGFGSFERRERAEREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +TN+ + I   RV  F      K+++ 
Sbjct: 61 RNPKTNEPMTIPATRVPGFSPGKQFKEKVA 90


>gi|320088600|emb|CBY98359.1| DNA-binding protein HU-alpha NS2; HU-2 [Salmonella enterica
          subsp. enterica serovar Weltevreden str.
          2007-60-3289-1]
          Length = 74

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 39/71 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+ +  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNLQTNQEVKI 75
          RN QT +E+KI
Sbjct: 61 RNPQTGKEIKI 71


>gi|167764650|ref|ZP_02436771.1| hypothetical protein BACSTE_03040 [Bacteroides stercoris ATCC
           43183]
 gi|167697319|gb|EDS13898.1| hypothetical protein BACSTE_03040 [Bacteroides stercoris ATCC
           43183]
          Length = 101

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 55/97 (56%), Gaps = 1/97 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + + +LV +I++E G+++K+S + +  +   + +   +   + +  F TF VKQK +R G
Sbjct: 1   MNKKELVDAIAEETGMNKKESRKLLNVIIGIVIEEMKKDGKLLLMGFGTFFVKQKPARRG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
            N  T   ++I  +RVV F+ S+ L   ++   RGRK
Sbjct: 61  MNPSTFVPIEIPAKRVVYFRPSAYL-NSLLKRKRGRK 96


>gi|317485299|ref|ZP_07944179.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
 gi|316923425|gb|EFV44631.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
          Length = 100

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 54/96 (56%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T++D+V++I ++   +R D    V  L   +  +  + +A+ +S F  F    K 
Sbjct: 1  MNRALTKADIVEAIYEKTDRNRADVKNTVEILLGLMKQAIKKDDALLVSGFGKFEAYDKE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          +R GRN QT++ + + PR+VVVF+ S   +  +  +
Sbjct: 61 ARKGRNPQTDETITLPPRKVVVFRLSRKFRAELNGE 96


>gi|320106540|ref|YP_004182130.1| histone family protein DNA-binding protein [Terriglobus saanensis
          SP1PR4]
 gi|319925061|gb|ADV82136.1| histone family protein DNA-binding protein [Terriglobus saanensis
          SP1PR4]
          Length = 89

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 43/85 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL++ I    GL R  +      +F+ +  +   G+ I++  F  F VK + + +G
Sbjct: 1  MIKQDLIQRIVDRSGLPRTKAEAATDVIFDTMKKAMASGDRIELRGFGVFTVKPRKTGIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN +T  EV I+P + V FK    L
Sbjct: 61 RNPRTGAEVSIEPGKAVRFKPGKDL 85


>gi|86131320|ref|ZP_01049919.1| DNA-binding protein HU [Dokdonia donghaensis MED134]
 gi|332292027|ref|YP_004430636.1| histone family protein DNA-binding protein [Krokinobacter
          diaphorus 4H-3-7-5]
 gi|85818731|gb|EAQ39891.1| DNA-binding protein HU [Dokdonia donghaensis MED134]
 gi|332170113|gb|AEE19368.1| histone family protein DNA-binding protein [Krokinobacter
          diaphorus 4H-3-7-5]
          Length = 96

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 48/93 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  +S++ G+ + D    + +   E+  S   G+ + +  F +F +K +  + G
Sbjct: 1  MTKADIVAKVSEKLGIEKNDVQATIESFMEEVKTSLEGGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          RN+  N  +KI    +  FK + +  + +  ++
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVFVEGVKTNV 93


>gi|86134967|ref|ZP_01053549.1| DNA-binding protein [Polaribacter sp. MED152]
 gi|85821830|gb|EAQ42977.1| DNA-binding protein [Polaribacter sp. MED152]
          Length = 96

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 47/96 (48%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D+V  IS + G+ + D    V     E+ D+   G+ + +  F +F +K +  + G
Sbjct: 1   MTKADIVSKISDKSGIEKTDVLATVEAFMTEVKDALENGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RN+  N  +KI    +  FK +    + + + +  +
Sbjct: 61  RNISKNTTIKIPAHNIPAFKPAKTFTEGVKNKVAVK 96


>gi|261337946|ref|ZP_05965830.1| DNA-binding protein HU [Bifidobacterium gallicum DSM 20093]
 gi|270277441|gb|EFA23295.1| DNA-binding protein HU [Bifidobacterium gallicum DSM 20093]
          Length = 93

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 45/90 (50%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +SDLV  I+++  L++  +   V    +   ++   GE +K++   +     + +R GR
Sbjct: 4  NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVPRAARTGR 63

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N +T + ++I     V   A S+LKK + +
Sbjct: 64 NPRTGETIEIPATYGVRISAGSLLKKAVTE 93


>gi|187734792|ref|YP_001876904.1| histone family protein DNA-binding protein [Akkermansia
          muciniphila ATCC BAA-835]
 gi|187424844|gb|ACD04123.1| histone family protein DNA-binding protein [Akkermansia
          muciniphila ATCC BAA-835]
          Length = 101

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 1/96 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+KT+T+ DLV  IS E   ++ +    V    + I  +   G+ + I +F TF VK+  
Sbjct: 1  MAKTLTKRDLVNKISAETNFTQIEVFDIVQRAVDIISSTLAEGDRVVIRNFGTFQVKEVK 60

Query: 61 SRVGRNLQTN-QEVKIDPRRVVVFKASSILKKRIMD 95
           +VGRN +   Q+V I  R VV FK    LK ++  
Sbjct: 61 PKVGRNPKNPDQDVPIPARSVVKFKVGKELKDQVAK 96


>gi|148826039|ref|YP_001290792.1| integration host factor subunit alpha [Haemophilus influenzae
          PittEE]
 gi|229847462|ref|ZP_04467559.1| 50S ribosomal protein L35 [Haemophilus influenzae 7P49H1]
 gi|166918506|sp|A5UCA8|IHFA_HAEIE RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|148716199|gb|ABQ98409.1| 50S ribosomal protein L35 [Haemophilus influenzae PittEE]
 gi|229809603|gb|EEP45330.1| 50S ribosomal protein L35 [Haemophilus influenzae 7P49H1]
          Length = 96

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 52/92 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+ D+++ +S ++ LS++D+   V     EI  S   G+ +K+S F  F ++ K SR 
Sbjct: 3  TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRLSLESGQDVKLSGFGNFELRDKSSRP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T   V +  RRVV FK    L+ R+  
Sbjct: 63 GRNPKTGDVVAVSARRVVTFKPGQKLRARVEK 94


>gi|302847610|ref|XP_002955339.1| hypothetical protein VOLCADRAFT_83165 [Volvox carteri f.
           nagariensis]
 gi|300259411|gb|EFJ43639.1| hypothetical protein VOLCADRAFT_83165 [Volvox carteri f.
           nagariensis]
          Length = 186

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 48/91 (52%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
           ++ LV  I+KE  +++  +T+   +LFN + ++   G+ + +  F TF  + +  + GRN
Sbjct: 44  KAVLVDQIAKEAEITKAQATKAFDSLFNAVQEAVTSGKRVTVLGFGTFESRLRKEKNGRN 103

Query: 67  LQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
            +T + + I       F+AS   K+++   +
Sbjct: 104 PRTGETITIPAATAPAFRASVSFKEKVNGKV 134


>gi|326385372|ref|ZP_08207017.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens
          DSM 19370]
 gi|326210178|gb|EGD60950.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens
          DSM 19370]
          Length = 93

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 49/92 (53%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+  ++L ++++   GL++  +   V  +FN I ++A +GE I +++F  F VK   +R 
Sbjct: 2  TMNTAELAEAVASSQGLTKAAARELVDAVFNAIVEAATKGEEISLNAFGKFKVKDTPARE 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN  T   + I   R + F  +  +K +I  
Sbjct: 62 GRNPSTGAVIAIAASRKLTFAPAKAVKDKING 93


>gi|227494793|ref|ZP_03925109.1| DNA-binding protein HU [Actinomyces coleocanis DSM 15436]
 gi|226831245|gb|EEH63628.1| DNA-binding protein HU [Actinomyces coleocanis DSM 15436]
          Length = 95

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 47/95 (49%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M  ++ R+ LV +I+ +  +++  +   +      + +S   GE +K++   +    ++ 
Sbjct: 1  MDMSVNRTQLVAAIADKANITKVQADAALVAFQEVLTESLAAGETVKVTGLFSVERVERA 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +R GRN QT ++++I     V   A S LKK +  
Sbjct: 61 ARTGRNPQTGEQIQIPAGFGVKISAGSTLKKAVAK 95


>gi|332288797|ref|YP_004419649.1| integration host factor protein subunit beta [Gallibacterium
          anatis UMN179]
 gi|330431693|gb|AEC16752.1| integration host factor protein subunit beta [Gallibacterium
          anatis UMN179]
          Length = 93

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++  I++   +S K     V  +   +  +  +G+ I+I  F +F ++ +  R 
Sbjct: 1  MTKSELIEKLINRHPTMSIKHIEFSVKEIIEHLSLTLEKGDRIEIRRFGSFALRYRQPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T  +V ++ + V  FKA   L++R+ +
Sbjct: 61 GRNPKTGTQVSLEAKSVPHFKAGKELRERVDN 92


>gi|291515643|emb|CBK64853.1| Bacterial nucleoid DNA-binding protein [Alistipes shahii WAL
          8301]
          Length = 86

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 46/81 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++  V++I+ +  +S+ D+ + V  +      S   GE + ++   TF V+QK  RVG
Sbjct: 1  MNKAQFVEAIALDANISKIDARKAVDAMIRVTVQSLREGERLTLTGLGTFSVQQKSERVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKA 85
          RN +T   VKI PR+V+ F+ 
Sbjct: 61 RNPRTGAAVKIPPRKVIKFRP 81


>gi|54026181|ref|YP_120423.1| putative histone-like DNA-binding protein [Nocardia farcinica IFM
          10152]
 gi|54017689|dbj|BAD59059.1| putative histone-like DNA-binding protein [Nocardia farcinica IFM
          10152]
          Length = 232

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 49/94 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++  RV 
Sbjct: 1  MNKAELIDVLTEKLGTDRRTATAAVEHVVDTIVRAVHKGQSVTITGFGVFEQRKRAPRVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+    V  F+  +  K  I    +
Sbjct: 61 RNPRTGETVKVKATSVPAFRPGAQFKAVIAGKQK 94


>gi|167646182|ref|YP_001683845.1| histone family protein DNA-binding protein [Caulobacter sp. K31]
 gi|167348612|gb|ABZ71347.1| histone family protein DNA-binding protein [Caulobacter sp. K31]
          Length = 92

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +  SDLV + ++ E  L++  +   +  +F  + D+AV+GE + I  F  F V+ K +R 
Sbjct: 1  MNVSDLVDAAVAAEPKLTKTQAKALIDGVFKALSDAAVKGEEVSIPGFGKFKVQAKPART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN  T   ++I   + V F A+  LK  +  
Sbjct: 61 GRNPATGGTIEIAASKKVAFTAAKQLKDAVNG 92


>gi|325277743|ref|ZP_08143307.1| DNA-binding protein HU [Pseudomonas sp. TJI-51]
 gi|324097117|gb|EGB95399.1| DNA-binding protein HU [Pseudomonas sp. TJI-51]
          Length = 103

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 41/89 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L++ ++    LS+  + + V    + I  S      + +  F  F   ++ +RVG
Sbjct: 1  MNKAQLIEQVAARAELSQAMAKKAVDAFIDGIKASLSTHTPVALVGFGRFETARRPARVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          R+ ++ + + I     V F+A   LK  +
Sbjct: 61 RDPRSGKPLNIPAAMTVKFRAGKDLKDAV 89


>gi|86157913|ref|YP_464698.1| histone-like DNA-binding protein [Anaeromyxobacter dehalogenans
          2CP-C]
 gi|197122784|ref|YP_002134735.1| histone family protein DNA-binding protein [Anaeromyxobacter sp.
          K]
 gi|220917567|ref|YP_002492871.1| histone family protein DNA-binding protein [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|85774424|gb|ABC81261.1| Histone-like DNA-binding protein [Anaeromyxobacter dehalogenans
          2CP-C]
 gi|196172633|gb|ACG73606.1| histone family protein DNA-binding protein [Anaeromyxobacter sp.
          K]
 gi|219955421|gb|ACL65805.1| histone family protein DNA-binding protein [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 90

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T++DL++ + +    LS++     V ++F  +     + +   +  F TF VK++  RV
Sbjct: 1  MTKADLIEKVQALHDDLSKRQVALLVDSVFEHLAKGIRKDKRFTMPGFGTFVVKRRAGRV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QT  E++I P + V FK +  LKK +
Sbjct: 61 GRNPQTGAEIQIAPTKTVGFKPAPELKKAL 90


>gi|291613189|ref|YP_003523346.1| histone family protein DNA-binding protein [Sideroxydans
          lithotrophicus ES-1]
 gi|291583301|gb|ADE10959.1| histone family protein DNA-binding protein [Sideroxydans
          lithotrophicus ES-1]
          Length = 95

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RSDL+  ++++   L  KD    V  + +++  +  +G  ++I  F +F +  +  R 
Sbjct: 1  MNRSDLISKLAEQTPNLQAKDVELGVRVILDKLATTISKGNRVEIRGFGSFGLNYRKPRN 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
          GRN +T  ++++  +    FK    LK+
Sbjct: 61 GRNPKTGAKIEVAAKYHPRFKPGKALKE 88


>gi|313886631|ref|ZP_07820343.1| DNA-binding protein HU [Porphyromonas asaccharolytica
          PR426713P-I]
 gi|332299532|ref|YP_004441453.1| histone family protein DNA-binding protein [Porphyromonas
          asaccharolytica DSM 20707]
 gi|312923927|gb|EFR34724.1| DNA-binding protein HU [Porphyromonas asaccharolytica
          PR426713P-I]
 gi|332176595|gb|AEE12285.1| histone family protein DNA-binding protein [Porphyromonas
          asaccharolytica DSM 20707]
          Length = 91

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 48/85 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D +K+++ +  L++KD+      +   I +   +GE + +  F +F+V ++ +R G
Sbjct: 1  MNKTDFIKTVADKAQLTQKDTKAVYEAMVETIHEEMKKGERLTLVGFGSFYVSERAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N Q+ + ++I   + + FK S+ L
Sbjct: 61 INPQSGKTIQIKASKSIKFKPSTAL 85


>gi|91977359|ref|YP_570018.1| histone-like DNA-binding protein [Rhodopseudomonas palustris BisB5]
 gi|91683815|gb|ABE40117.1| histone-like DNA-binding protein [Rhodopseudomonas palustris BisB5]
          Length = 103

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T   L  ++++E  LS+K +   +  L   I     +GE I+I       V+++ +R 
Sbjct: 14  TVTLKHLAAALAEEHELSKKQTEAILGDLVARITKHLKKGERIRIVGLGILQVRKRAART 73

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN  T + ++I   + V F+A+  LK+ I
Sbjct: 74  GRNPATGETIQIKASKKVAFRAAKELKEAI 103


>gi|224282721|ref|ZP_03646043.1| DNA-binding protein HB1 [Bifidobacterium bifidum NCIMB 41171]
 gi|310287180|ref|YP_003938438.1| DNA-binding protein HU [Bifidobacterium bifidum S17]
 gi|311064042|ref|YP_003970767.1| DNA-binding protein [Bifidobacterium bifidum PRL2010]
 gi|313139879|ref|ZP_07802072.1| DNA-binding protein HB1 [Bifidobacterium bifidum NCIMB 41171]
 gi|309251116|gb|ADO52864.1| DNA-binding protein HU [Bifidobacterium bifidum S17]
 gi|310866361|gb|ADP35730.1| DNA-binding protein [Bifidobacterium bifidum PRL2010]
 gi|313132389|gb|EFR50006.1| DNA-binding protein HB1 [Bifidobacterium bifidum NCIMB 41171]
          Length = 93

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 46/90 (51%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +SDLV  I+++  L++  +   V    +   ++   GE +K++   +    ++ +R GR
Sbjct: 4  NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMQSGEGLKLTGLFSAERVKRAARTGR 63

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N +T + ++I     V   A S+LKK + +
Sbjct: 64 NPRTGEIIEIPATYGVRISAGSLLKKAVTE 93


>gi|297202603|ref|ZP_06920000.1| DNA-binding protein HU 2 [Streptomyces sviceus ATCC 29083]
 gi|197709867|gb|EDY53901.1| DNA-binding protein HU 2 [Streptomyces sviceus ATCC 29083]
          Length = 215

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1   MNKAQLVEAIADKVG-GRQQAADAVDAVLDAIVRATVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           RN QT + V++    V  F+A    K  +    +  K +     +P GS
Sbjct: 60  RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGTKKLPKNDVAVKKAPKGS 108


>gi|239982533|ref|ZP_04705057.1| putative histone-like DNA-binding protein [Streptomyces albus
           J1074]
 gi|291454376|ref|ZP_06593766.1| histone-like DNA binding protein [Streptomyces albus J1074]
 gi|291357325|gb|EFE84227.1| histone-like DNA binding protein [Streptomyces albus J1074]
          Length = 217

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 1/109 (0%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+++   V  + + +  + V GE + ++ F +F    + +R  
Sbjct: 1   MNKAQLVEAIADKVG-GRQNAAEAVDAVLDAMVRAVVAGERVSVTGFGSFEKVDRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           RN QT + V++    V  F+A    K  +    +  K +     +P GS
Sbjct: 60  RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGTKKLPKNDVAVKKAPKGS 108


>gi|114047123|ref|YP_737673.1| histone family protein DNA-binding protein [Shewanella sp. MR-7]
 gi|113888565|gb|ABI42616.1| histone family protein DNA-binding protein [Shewanella sp. MR-7]
          Length = 91

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L++ I+     S+  +   V  +  +I  +   GE + +  F TF ++    + G
Sbjct: 1  MNKAQLIQRIATSLEQSQASTKPVVEQILQQIHIALSEGEKVFLPQFGTFELRFHLPKSG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + ++I       FKA++ LKK I +
Sbjct: 61 RNPQTGETIEIAGFNQPSFKAATALKKAINE 91


>gi|320096006|ref|ZP_08027619.1| DNA-binding protein HU [Actinomyces sp. oral taxon 178 str.
          F0338]
 gi|319977077|gb|EFW08807.1| DNA-binding protein HU [Actinomyces sp. oral taxon 178 str.
          F0338]
          Length = 93

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 48/92 (52%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R++LV  I++   L++  +   +    + + +S  +GE +K++   +    ++ +R 
Sbjct: 2  SVNRTELVAQIAERANLTKVQADAALGAFQDVLVESLSKGEPVKVTGLLSVERVERAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +E+KI     V   A S LKK +  
Sbjct: 62 GRNPRTGEEIKIPAGFGVKLSAGSTLKKAVAK 93


>gi|295689634|ref|YP_003593327.1| histone family protein DNA-binding protein [Caulobacter segnis
          ATCC 21756]
 gi|295431537|gb|ADG10709.1| histone family protein DNA-binding protein [Caulobacter segnis
          ATCC 21756]
          Length = 92

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 43/90 (47%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+++LV +I+++ G+++  +   +    + + DS   G+ +++  F TF    + +   R
Sbjct: 3  TKAELVTAIAEKAGINKNQAKDALEAFIDAVTDSLKSGQDVRLVGFGTFKAVTRAAGTAR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N +T + V     +   F+    LK  +  
Sbjct: 63 NPRTGETVNRPASKTARFQVGEGLKSSLNG 92


>gi|257469846|ref|ZP_05633938.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
 gi|317064075|ref|ZP_07928560.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
 gi|313689751|gb|EFS26586.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
          Length = 90

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V+  +K  G ++K++ R V      + D+ V+G+ I    +  + VK++ +R  
Sbjct: 1  MTKKEFVELYAKNGGFTKKEAERAVNLFLASVEDTLVKGDDITFVGWGKWEVKERAAREV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QTN++++I+ ++ V FK    L  ++ 
Sbjct: 61 RNPQTNKKMRIEAKKAVKFKVGKTLADKVK 90


>gi|152967315|ref|YP_001363099.1| histone family protein DNA-binding protein [Kineococcus
          radiotolerans SRS30216]
 gi|151361832|gb|ABS04835.1| histone family protein DNA-binding protein [Kineococcus
          radiotolerans SRS30216]
          Length = 92

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 47/92 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + RS+LV ++++  GL++ D+   +  L + + ++  +GEA+K+    T    ++ +R G
Sbjct: 1  MNRSELVTAVAQRAGLTQTDTDAVINALGDVLVEAVAKGEAVKLPGLMTVERVERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T + ++I         A S LK      
Sbjct: 61 RNPRTGETMEIAASYGAKLTAGSKLKAAANGS 92


>gi|254392478|ref|ZP_05007658.1| DNA-binding protein HU [Streptomyces clavuligerus ATCC 27064]
 gi|294815333|ref|ZP_06773976.1| Histone protein DNA-binding protein [Streptomyces clavuligerus
          ATCC 27064]
 gi|326443687|ref|ZP_08218421.1| histone-like DNA binding protein [Streptomyces clavuligerus ATCC
          27064]
 gi|197706145|gb|EDY51957.1| DNA-binding protein HU [Streptomyces clavuligerus ATCC 27064]
 gi|294327932|gb|EFG09575.1| Histone protein DNA-binding protein [Streptomyces clavuligerus
          ATCC 27064]
          Length = 222

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV++I+ + G  R+ +   V ++ + I  + V G+ + ++ F +F   ++ +R  
Sbjct: 1  MNKAQLVEAIADKLG-GRQQAADAVDSVLDAIVRAVVAGDRVSVTGFGSFEKVERPARYA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN QT + V++    V  F+A    K  +    +
Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGAKK 93


>gi|183602609|ref|ZP_02963974.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
          HN019]
 gi|219683651|ref|YP_002470034.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
          AD011]
 gi|241190683|ref|YP_002968077.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
          Bl-04]
 gi|241196089|ref|YP_002969644.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
          DSM 10140]
 gi|183218250|gb|EDT88896.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
          HN019]
 gi|219621301|gb|ACL29458.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
          AD011]
 gi|240249075|gb|ACS46015.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
          Bl-04]
 gi|240250643|gb|ACS47582.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
          DSM 10140]
 gi|289178420|gb|ADC85666.1| DNA-binding protein HU [Bifidobacterium animalis subsp. lactis
          BB-12]
 gi|295793672|gb|ADG33207.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
          V9]
          Length = 93

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +SDLV  IS++ GL++  +   V    +   ++   GE +K++   +    ++ +R GR
Sbjct: 4  NKSDLVAKISQKSGLTKAQAEAAVNAFRDVFIEAMKNGEGLKLTGLLSAERVKRAARTGR 63

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N +T + ++I     V   A S+LKK + +
Sbjct: 64 NPRTGETIEIPATYGVRISAGSLLKKAVSE 93


>gi|21221395|ref|NP_627174.1| DNA-binding protein HU (hs1) [Streptomyces coelicolor A3(2)]
 gi|239981939|ref|ZP_04704463.1| DNA-binding protein HU (hs1) [Streptomyces albus J1074]
 gi|256787421|ref|ZP_05525852.1| DNA-binding protein HU (hs1) [Streptomyces lividans TK24]
 gi|289771320|ref|ZP_06530698.1| HSl protein [Streptomyces lividans TK24]
 gi|291453793|ref|ZP_06593183.1| DNA-binding protein Hu [Streptomyces albus J1074]
 gi|61222642|sp|P0A3H5|DBH1_STRCO RecName: Full=DNA-binding protein HU 1; AltName: Full=HSl
 gi|61222644|sp|P0A3H6|DBH1_STRLI RecName: Full=DNA-binding protein HU 1; AltName: Full=HSl
 gi|2104560|dbj|BAA19970.1| HSl protein [Streptomyces lividans TK24]
 gi|6063408|dbj|BAA85334.1| histone-like protein HSl [Streptomyces lividans]
 gi|6911980|emb|CAB72196.1| DNA-binding protein Hu (hs1) [Streptomyces coelicolor A3(2)]
 gi|289701519|gb|EFD68948.1| HSl protein [Streptomyces lividans TK24]
 gi|291356742|gb|EFE83644.1| DNA-binding protein Hu [Streptomyces albus J1074]
          Length = 93

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV +++    ++RKD+   +      + D   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDIVSKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           RN QT + ++I     V   A S LK+ 
Sbjct: 61 ARNPQTGEPIQIPAGYSVKVSAGSKLKEA 89


>gi|239904866|ref|YP_002951604.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
          RS-1]
 gi|239794729|dbj|BAH73718.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
          RS-1]
          Length = 100

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 49/95 (51%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           KT+T++D+V  I ++   +R +    V  L   +  S  R  ++ +S F  F    K +
Sbjct: 3  GKTLTKADIVDYIYEKTERNRAEVKVLVDHLLELMKQSIKRDNSLLVSGFGKFESYDKKA 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          R GRN QTN  + + PR+VVVF+ S   +  +  D
Sbjct: 63 RKGRNPQTNASIMLPPRKVVVFRLSRKFRAELNPD 97


>gi|119025570|ref|YP_909415.1| DNA-binding protein HB1 [Bifidobacterium adolescentis ATCC 15703]
 gi|154487028|ref|ZP_02028435.1| hypothetical protein BIFADO_00866 [Bifidobacterium adolescentis
          L2-32]
 gi|171743350|ref|ZP_02919157.1| hypothetical protein BIFDEN_02481 [Bifidobacterium dentium ATCC
          27678]
 gi|212716910|ref|ZP_03325038.1| hypothetical protein BIFCAT_01854 [Bifidobacterium catenulatum
          DSM 16992]
 gi|225350744|ref|ZP_03741767.1| hypothetical protein BIFPSEUDO_02313 [Bifidobacterium
          pseudocatenulatum DSM 20438]
 gi|283455679|ref|YP_003360243.1| DNA-binding protein HU [Bifidobacterium dentium Bd1]
 gi|306823294|ref|ZP_07456670.1| DNA-binding protein HU [Bifidobacterium dentium ATCC 27679]
 gi|309801902|ref|ZP_07696017.1| DNA-binding protein HB1 [Bifidobacterium dentium JCVIHMP022]
 gi|118765154|dbj|BAF39333.1| DNA-binding protein HB1 [Bifidobacterium adolescentis ATCC 15703]
 gi|154084891|gb|EDN83936.1| hypothetical protein BIFADO_00866 [Bifidobacterium adolescentis
          L2-32]
 gi|171278964|gb|EDT46625.1| hypothetical protein BIFDEN_02481 [Bifidobacterium dentium ATCC
          27678]
 gi|212660195|gb|EEB20770.1| hypothetical protein BIFCAT_01854 [Bifidobacterium catenulatum
          DSM 16992]
 gi|225158200|gb|EEG71442.1| hypothetical protein BIFPSEUDO_02313 [Bifidobacterium
          pseudocatenulatum DSM 20438]
 gi|283102313|gb|ADB09419.1| DNA-binding protein HU [Bifidobacterium dentium Bd1]
 gi|304553926|gb|EFM41837.1| DNA-binding protein HU [Bifidobacterium dentium ATCC 27679]
 gi|308221458|gb|EFO77755.1| DNA-binding protein HB1 [Bifidobacterium dentium JCVIHMP022]
          Length = 93

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 45/90 (50%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +SDLV  I+++  L++  +   V    +   ++   GE +K++   +    ++ +R GR
Sbjct: 4  NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMQSGEGLKLTGLFSAERVKRAARTGR 63

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N +T + ++I     V   A S+LKK +  
Sbjct: 64 NPRTGETIEIPATYGVRISAGSLLKKAVTK 93


>gi|328948273|ref|YP_004365610.1| histone family protein DNA-binding protein [Treponema
           succinifaciens DSM 2489]
 gi|328448597|gb|AEB14313.1| histone family protein DNA-binding protein [Treponema
           succinifaciens DSM 2489]
          Length = 108

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 1/106 (0%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           SK +T++DL++++ +     +      +  LF+++ +    G  I++  F TF  + +  
Sbjct: 3   SKKVTKNDLLEAVYQNTKYEKLAVQTIMENLFDQMKEVLKDGNTIELRGFGTFEARLRKG 62

Query: 62  RV-GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           R   RN +T Q++ + P  VV F++   LKK + D       N+ +
Sbjct: 63  RQNARNPKTGQQLSVAPHYVVAFRSGQELKKALWDLPVSEVSNEQN 108


>gi|307329817|ref|ZP_07608972.1| histone family protein DNA-binding protein [Streptomyces
          violaceusniger Tu 4113]
 gi|306884546|gb|EFN15577.1| histone family protein DNA-binding protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 190

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV++I+ + G  R+ +   V  + + I  + V GE + ++ F +F   ++ +R  
Sbjct: 1  MNKAQLVEAIADKVG-GRQQAAEAVDAVLDAIVRAVVAGERVSVTGFGSFEKVERPARYA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN QT + V++    V  F+A    K  +    +
Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93


>gi|229817265|ref|ZP_04447547.1| hypothetical protein BIFANG_02525 [Bifidobacterium angulatum DSM
          20098]
 gi|229785054|gb|EEP21168.1| hypothetical protein BIFANG_02525 [Bifidobacterium angulatum DSM
          20098]
          Length = 94

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 46/90 (51%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +SDLV  I+++  L++  +   V    +   ++   GE +K++   +    ++ +R GR
Sbjct: 4  NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTGR 63

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N +T + ++I     V   A S+LKK + +
Sbjct: 64 NPRTGETIEIPATYGVRISAGSLLKKAVTE 93


>gi|294676551|ref|YP_003577166.1| DNA-binding protein HU [Rhodobacter capsulatus SB 1003]
 gi|294475371|gb|ADE84759.1| DNA-binding protein HU-2 [Rhodobacter capsulatus SB 1003]
          Length = 91

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 44/87 (50%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M KT ++SDLV +++ + G ++ +    +      I      G  + +  F +F  +QK 
Sbjct: 1  MGKTFSKSDLVDAVAAQTGFAKTNVKDMLDATLGVITAQTEAGSKVTLMGFGSFEQRQKK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASS 87
          +R+GRN  T ++V+I     + FK + 
Sbjct: 61 ARMGRNPATGEQVEIPASAHLAFKPAK 87


>gi|196228197|ref|ZP_03127064.1| histone family protein DNA-binding protein [Chthoniobacter flavus
          Ellin428]
 gi|196227600|gb|EDY22103.1| histone family protein DNA-binding protein [Chthoniobacter flavus
          Ellin428]
          Length = 92

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 5  ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + +++LV+++ K  G  +S+  + R V  +   I     +G+ +++  F TF V  + +R
Sbjct: 1  MNKAELVEAVQKSLGKDVSKAQAERSVEAVIEGIKSGLKKGKPVQLVGFGTFKVTNRKAR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +G N +T +++KI   + V F A   LK ++ 
Sbjct: 61 MGINPKTGEKIKIKASKSVKFAAGKDLKSKLK 92


>gi|87199239|ref|YP_496496.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans
          DSM 12444]
 gi|87134920|gb|ABD25662.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans
          DSM 12444]
          Length = 91

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  SDL   I+   GLS+ D+ + V ++F  I D+A +GE + ++ F  F VK   +R G
Sbjct: 1  MNNSDLADIIAANHGLSKADARKAVDSVFAAIADAAAKGEEVSLNGFGKFKVKNTPAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T   ++I     + F A+  +K ++  
Sbjct: 61 RNPSTGATIQIAASNKLTFAAAKAVKDKLNG 91


>gi|299147625|ref|ZP_07040689.1| DNA-binding protein HU [Bacteroides sp. 3_1_23]
 gi|298514412|gb|EFI38297.1| DNA-binding protein HU [Bacteroides sp. 3_1_23]
          Length = 88

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 48/86 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K ++ +  LS  ++T  V  +   I ++  +GE++ +  F +F V+++ +R G
Sbjct: 1  MNKSELIKEVALKGQLSFNEATNAVDAIMETIAETMHKGESVTLVGFGSFVVQERKARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N  T   + I  +R V F+  S ++
Sbjct: 61 HNSATGGSMLIPAKRQVKFRPGSKMR 86


>gi|198283417|ref|YP_002219738.1| histone family protein DNA-binding protein [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|198247938|gb|ACH83531.1| histone family protein DNA-binding protein [Acidithiobacillus
          ferrooxidans ATCC 53993]
          Length = 107

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 49/89 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+ DL   + +  G +   + +FV   F  +  + +    +K+S F  F V+ K SR 
Sbjct: 2  TITKKDLANHLWEVGGWTHPQAEQFVDAFFEHMRAAIITESELKLSGFGRFTVRAKSSRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T Q  +I  RRVV F AS++L+ +
Sbjct: 62 GRNPKTGQPYEIKARRVVTFSASALLRAK 90


>gi|260061540|ref|YP_003194620.1| DNA-binding protein HU [Robiginitalea biformata HTCC2501]
 gi|88785672|gb|EAR16841.1| DNA-binding protein HU [Robiginitalea biformata HTCC2501]
          Length = 96

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 48/96 (50%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D+V  IS+E G+ + D    V      +  S   G+ + +  F +F +K +  + G
Sbjct: 1   MTKADIVSIISEELGMEKGDVQATVEKFMEAVKSSLENGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RN+  N  +KI    +  FK + +  + +  +++ +
Sbjct: 61  RNISKNTTIKIPAHNIPAFKPAKVFVEGVKSNVQVK 96


>gi|37523114|ref|NP_926491.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421]
 gi|35214117|dbj|BAC91486.1| gll3545 [Gloeobacter violaceus PCC 7421]
          Length = 105

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + R  L++ ++    GL++K +   +      I D+  +G  +K+S F +F V+++ +R 
Sbjct: 7  LNRQQLLQQMASRVDGLTQKTAGAALDAALEVIADALAQGRTVKLSGFGSFQVRRRPART 66

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            + +T Q V +      VF  +  L++R+
Sbjct: 67 NIHPRTGQPVLVPAAWNAVFSPAQALRERL 96


>gi|282599288|ref|YP_003358600.1| putative DNA-binding protein [Shigella phage phiSboM-AG3]
 gi|226973594|gb|ACO94347.1| putative DNA-binding protein [Shigella phage phiSboM-AG3]
          Length = 92

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R++ V  I+    +++ ++ + V +  + +  +   G ++++  F  F VK + +R G
Sbjct: 1  MNRTEFVAHIASTQNITKGEAEKVVASFIDGVKTAVAAGASVQLVGFGAFEVKHQEAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN    Q ++I+ + VV FK    LK     
Sbjct: 61 RNPLNGQTIQIEAKNVVKFKVGEGLKNAANG 91


>gi|300775502|ref|ZP_07085363.1| integration host factor subunit alpha [Chryseobacterium gleum ATCC
           35910]
 gi|300505529|gb|EFK36666.1| integration host factor subunit alpha [Chryseobacterium gleum ATCC
           35910]
          Length = 96

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 49/96 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+++LV +IS + G  + ++ + V     EI  S   G+ + +  F +F +K + ++ G
Sbjct: 1   MTKAELVNTISNKLGTEKNETQKVVEAFMQEIRTSMYNGDNVYLRGFGSFIIKTRAAKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RN+  N  ++I    +  FK S    +++   +  +
Sbjct: 61  RNISKNTAIEIPAHNIPAFKPSKSFVEKVKTKVAVK 96


>gi|298530305|ref|ZP_07017707.1| histone family protein DNA-binding protein [Desulfonatronospira
          thiodismutans ASO3-1]
 gi|298509679|gb|EFI33583.1| histone family protein DNA-binding protein [Desulfonatronospira
          thiodismutans ASO3-1]
          Length = 96

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 47/95 (49%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M  T+T+SDLV  + ++    R +    +  L + I  +  +  ++ IS F  F    K 
Sbjct: 1  MVNTLTKSDLVDRVYEQSDRKRAEVKGQIEHLLDIIKQAIKKDHSLLISGFGKFETYDKK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R GRN QT++ + +  R+VVVF+ S   +  I  
Sbjct: 61 PRKGRNPQTSEAIILPGRKVVVFRLSRKFRSEINQ 95


>gi|298345223|ref|YP_003717910.1| DNA-binding protein HU [Mobiluncus curtisii ATCC 43063]
 gi|304390783|ref|ZP_07372735.1| DNA-binding protein HU [Mobiluncus curtisii subsp. curtisii ATCC
          35241]
 gi|315655645|ref|ZP_07908543.1| DNA-binding protein HU [Mobiluncus curtisii ATCC 51333]
 gi|315656440|ref|ZP_07909329.1| DNA-binding protein HU [Mobiluncus curtisii subsp. holmesii ATCC
          35242]
 gi|298235284|gb|ADI66416.1| DNA-binding protein HU [Mobiluncus curtisii ATCC 43063]
 gi|304325666|gb|EFL92912.1| DNA-binding protein HU [Mobiluncus curtisii subsp. curtisii ATCC
          35241]
 gi|315489709|gb|EFU79336.1| DNA-binding protein HU [Mobiluncus curtisii ATCC 51333]
 gi|315492999|gb|EFU82601.1| DNA-binding protein HU [Mobiluncus curtisii subsp. holmesii ATCC
          35242]
          Length = 94

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 50/92 (54%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R++LV  I+K+ GLS+ ++   ++     + DS  +GE +K++         + +R 
Sbjct: 2  SVNRTELVAEIAKKAGLSKTEADGALSAFQEILIDSLKKGETVKVTGLMNVERVSRAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +E+KI     V   A S LKK + +
Sbjct: 62 GRNPRTGEEIKIPAGYGVKISAGSTLKKAVSN 93


>gi|228469565|ref|ZP_04054558.1| DNA-binding protein HU [Porphyromonas uenonis 60-3]
 gi|228308915|gb|EEK17590.1| DNA-binding protein HU [Porphyromonas uenonis 60-3]
          Length = 90

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 47/85 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D +K+++ +  L++KD+      +   I +   +GE + +  F +F+V Q+ +R G
Sbjct: 1  MNKTDFIKTVADKAQLTQKDTKAVYEAIVETIHEEMKKGERLTLVGFGSFYVSQRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N ++ + + I   + + FK S+ L
Sbjct: 61 INPRSGKTIDIKASKSIKFKPSTAL 85


>gi|3641282|gb|AAC36331.1| histone-like protein [Caulobacter crescentus CB15]
          Length = 92

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 41/89 (46%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+++LV +I+++ G+++  +   +      + DS   G+ +++  F TF    + +   R
Sbjct: 3  TKAELVTAIAEKAGINKNQAKDALEAFIEAVTDSLKSGQDVRLVGFGTFKAVTRAAGTAR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N +T + V         F+    LK  + 
Sbjct: 63 NPRTGETVNRPASNTARFQVGEGLKSSLN 91


>gi|255534616|ref|YP_003094987.1| DNA-binding protein HU [Flavobacteriaceae bacterium 3519-10]
 gi|255340812|gb|ACU06925.1| DNA-binding protein HU [Flavobacteriaceae bacterium 3519-10]
          Length = 96

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 49/96 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+++LV +IS + G  + ++ + V     EI  S   G+ + +  F +F +K + ++ G
Sbjct: 1   MTKAELVSTISNKLGTEKNETQKVVEAFMQEIRTSMYNGDNVYLRGFGSFVIKTRAAKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RN+  N  ++I    +  FK S    +++   +  +
Sbjct: 61  RNISKNTAIEIPAHNIPAFKPSKTFVEKVKTKVAVK 96


>gi|114799692|ref|YP_759440.1| DNA-binding protein HU [Hyphomonas neptunium ATCC 15444]
 gi|114739866|gb|ABI77991.1| DNA-binding protein HU [Hyphomonas neptunium ATCC 15444]
          Length = 88

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 48/87 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L K+++   GLS+ D+ + V  LF  +  +A   + + I+ F TF  K + +R G
Sbjct: 1  MNKGELTKAVAAASGLSQSDAGKAVDALFETVAAAAKSRQQVAIAGFGTFSAKTRNAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN  T + +KI  +  + FK +S LK 
Sbjct: 61 RNPATKETIKIPEKTSLAFKPASALKD 87


>gi|255589015|ref|XP_002534800.1| DNA-binding protein HU-alpha, putative [Ricinus communis]
 gi|223524551|gb|EEF27583.1| DNA-binding protein HU-alpha, putative [Ricinus communis]
          Length = 348

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTR----FVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          + + +L+ +++   G S+  +       +  +   +  +  RGEA+++ +F +F    + 
Sbjct: 1  MNKQELIDAVAASTGESKASTGEGEGEALDAILEAVTSAVTRGEAVQLIAFGSFSTGARS 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVV 82
           R GRN  T + + I   +   
Sbjct: 61 ERTGRNPSTGETITIPAAKTAK 82


>gi|218282536|ref|ZP_03488786.1| hypothetical protein EUBIFOR_01368 [Eubacterium biforme DSM 3989]
 gi|218216523|gb|EEC90061.1| hypothetical protein EUBIFOR_01368 [Eubacterium biforme DSM 3989]
          Length = 94

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 52/93 (55%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + +T+ D++ +I+++  L++KD T  V     +I +    G+ + ++ F  F + ++ +R
Sbjct: 2  EKLTKKDIISNIAEDSHLTKKDITEVVDLALTQIFEGLSEGKTVDLAGFGKFEITERKAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           G N  T ++++I+  + V FK +  LK+ +  
Sbjct: 62 EGINPLTKEKIQIEASKSVKFKIAKALKEAVNK 94


>gi|32035258|ref|ZP_00135276.1| COG0776: Bacterial nucleoid DNA-binding protein [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
 gi|126208092|ref|YP_001053317.1| integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae L20]
 gi|165976025|ref|YP_001651618.1| integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 3 str. JL03]
 gi|190149925|ref|YP_001968450.1| integration host factor, alpha chain [Actinobacillus
          pleuropneumoniae serovar 7 str. AP76]
 gi|303251009|ref|ZP_07337196.1| integration host factor, alpha chain [Actinobacillus
          pleuropneumoniae serovar 6 str. Femo]
 gi|303252240|ref|ZP_07338408.1| integration host factor, alpha chain [Actinobacillus
          pleuropneumoniae serovar 2 str. 4226]
 gi|307245471|ref|ZP_07527559.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
 gi|307247585|ref|ZP_07529629.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 2 str. S1536]
 gi|307249814|ref|ZP_07531791.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 4 str. M62]
 gi|307252164|ref|ZP_07534063.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 6 str. Femo]
 gi|307254425|ref|ZP_07536263.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256636|ref|ZP_07538416.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 10 str. D13039]
 gi|307258884|ref|ZP_07540616.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 11 str. 56153]
 gi|307261070|ref|ZP_07542750.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 12 str. 1096]
 gi|307263249|ref|ZP_07544869.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 13 str. N273]
 gi|322514396|ref|ZP_08067442.1| integration host factor subunit alpha [Actinobacillus ureae ATCC
          25976]
 gi|166918495|sp|A3MZX6|IHFA_ACTP2 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226707365|sp|B3H139|IHFA_ACTP7 RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|226707366|sp|B0BNN9|IHFA_ACTPJ RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|126096884|gb|ABN73712.1| integration host factor, alpha chain [Actinobacillus
          pleuropneumoniae serovar 5b str. L20]
 gi|165876126|gb|ABY69174.1| integration host factor, alpha chain [Actinobacillus
          pleuropneumoniae serovar 3 str. JL03]
 gi|189915056|gb|ACE61308.1| integration host factor, alpha chain [Actinobacillus
          pleuropneumoniae serovar 7 str. AP76]
 gi|302649023|gb|EFL79211.1| integration host factor, alpha chain [Actinobacillus
          pleuropneumoniae serovar 2 str. 4226]
 gi|302650140|gb|EFL80309.1| integration host factor, alpha chain [Actinobacillus
          pleuropneumoniae serovar 6 str. Femo]
 gi|306853812|gb|EFM86029.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
 gi|306855950|gb|EFM88109.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 2 str. S1536]
 gi|306858164|gb|EFM90243.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 4 str. M62]
 gi|306860464|gb|EFM92478.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 6 str. Femo]
 gi|306862724|gb|EFM94680.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306864884|gb|EFM96787.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 10 str. D13039]
 gi|306867235|gb|EFM99091.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 11 str. 56153]
 gi|306869247|gb|EFN01044.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 12 str. 1096]
 gi|306871466|gb|EFN03190.1| Integration host factor subunit alpha [Actinobacillus
          pleuropneumoniae serovar 13 str. N273]
 gi|322119712|gb|EFX91762.1| integration host factor subunit alpha [Actinobacillus ureae ATCC
          25976]
          Length = 98

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 55/92 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+ +L +S+ ++ G  ++ +  FV   F EI  S  +GE +K+S F  F +++K +R 
Sbjct: 2  ALTKIELAESLVEKCGFDKRIAKLFVEQFFEEIRSSLEKGEEVKLSGFGNFSLREKNARP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V +  RRVVVFK    L+ R+ +
Sbjct: 62 GRNPKTGETVAVTARRVVVFKPGQKLRDRVEN 93


>gi|253584243|ref|ZP_04861441.1| DNA-binding protein HU [Fusobacterium varium ATCC 27725]
 gi|251834815|gb|EES63378.1| DNA-binding protein HU [Fusobacterium varium ATCC 27725]
          Length = 90

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 51/90 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V+  +K  G ++K++ R V      + D+ V+G+ I    +  + VK++ +R  
Sbjct: 1  MTKKEFVELYAKNGGFTKKEAERAVNLFLASVEDTLVKGDNITFVGWGKWEVKERAAREV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QTN++++I+ ++ V FK    L  +I 
Sbjct: 61 RNPQTNKKMRIEAKKAVKFKVGKTLADKIK 90


>gi|261492544|ref|ZP_05989097.1| integration host factor alpha subunit [Mannheimia haemolytica
          serotype A2 str. BOVINE]
 gi|261311703|gb|EEY12853.1| integration host factor alpha subunit [Mannheimia haemolytica
          serotype A2 str. BOVINE]
          Length = 99

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 58/93 (62%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+ ++ +++ ++FGL ++ + +FV   F EI  S   GE +K+S F  F +++K +R 
Sbjct: 3  ALTKIEIAENLIEKFGLEKRVAKQFVELFFEEIRSSLENGEEVKLSGFGNFSLREKKARP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V +  RRVVVFKA   L++R+   
Sbjct: 63 GRNPKTGENVAVSARRVVVFKAGQKLRERVEQA 95


>gi|148555235|ref|YP_001262817.1| histone family protein DNA-binding protein [Sphingomonas
          wittichii RW1]
 gi|148500425|gb|ABQ68679.1| histone family protein DNA-binding protein [Sphingomonas
          wittichii RW1]
          Length = 91

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  +D+   ++ E G+ +  + R +      I D+A +G+ + +  F  F V  + +R G
Sbjct: 1  MNTADIAGVVAAEQGIDKAAAKRVIDAALKAITDAAKKGDEVSLPGFGKFKVTDRPAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T   + I   + V F A+  LK  +  
Sbjct: 61 RNPATGATLTIAASKKVSFTAAKALKDALNG 91


>gi|124007135|sp|Q4UKH2|DBH_RICFE RecName: Full=DNA-binding protein HU
          Length = 99

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 44/97 (45%), Gaps = 9/97 (9%)

Query: 5  ITRSDLVKSI---------SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55
          + +++ +  +         +    L++ D+ + +  + + +  +      I I+ F +F 
Sbjct: 1  MNKTEFIAFMTDHGHNHKHASHKTLTKADAEKALNLVLDSVISAIKSHHNINITGFGSFE 60

Query: 56 VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          +  + +R GRN +T  ++KID      F+A   +K+ 
Sbjct: 61 IHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEA 97


>gi|227539321|ref|ZP_03969370.1| DNA-binding protein HU [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241003|gb|EEI91018.1| DNA-binding protein HU [Sphingobacterium spiritivorum ATCC 33300]
          Length = 136

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 48/94 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+++++  IS + GL + D    V   F  + +S + GE + +  F +F VK++  +  
Sbjct: 43  MTKAEIIAEISNKTGLEKVDVQETVEAFFKVVKNSMIGGENVYVRGFGSFVVKKRAEKTA 102

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           RN+  N  + I    V  FK + +  +++ +  +
Sbjct: 103 RNISKNTAIIIPEHFVPSFKPAKVFVEKVKNGNK 136


>gi|217976981|ref|YP_002361128.1| histone family protein DNA-binding protein [Methylocella silvestris
           BL2]
 gi|217502357|gb|ACK49766.1| histone family protein DNA-binding protein [Methylocella silvestris
           BL2]
          Length = 118

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 3   KTITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +T TR+ L+ ++ +    LSR  +         EI ++ VRG+ +K+ SF  F V+ K  
Sbjct: 16  RTATRAALLDAVYEACPNLSRAQARDIFEMALEEIAEALVRGDCVKLRSFGLFSVRAKRE 75

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R+GRN +T  E  I PRRV+ FK S +L   +   
Sbjct: 76  RIGRNPRTGVEAPIKPRRVLTFKPSPVLSGCVNGA 110


>gi|261878950|ref|ZP_06005377.1| DNA-binding protein HU [Prevotella bergensis DSM 17361]
 gi|270334461|gb|EFA45247.1| DNA-binding protein HU [Prevotella bergensis DSM 17361]
          Length = 91

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 49/91 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LVK I+   GLS  D+ + +      I ++ V G+ +++  F TF  K++ +R G
Sbjct: 1  MNKTELVKKIADATGLSAADAKKALDATTCAIKEALVDGDKVQLIGFGTFSTKERPARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N  + ++++I  + VV F   S  ++ +  
Sbjct: 61 VNPSSGEKIQIAAKTVVKFNPGSEFEEAVNK 91


>gi|78358396|ref|YP_389845.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
 gi|78220801|gb|ABB40150.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
          Length = 95

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 5  ITRSDLVKSISKEFGL-----SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          +T+++L  ++ +   L     + K     ++   + I      G+ ++++ F  F V ++
Sbjct: 1  MTKAELEMAVVEVLALNGIKATHKAVADVISATLDVITGELAGGDPVRLTGFGAFKVTRR 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           +R+GRN +T + V+I     V F     LK+ + 
Sbjct: 61 TARIGRNPKTGEPVEIPASTGVKFSPGKTLKEALN 95


>gi|254362042|ref|ZP_04978168.1| integration host factor alpha subunit [Mannheimia haemolytica
          PHL213]
 gi|261495203|ref|ZP_05991665.1| integration host factor alpha subunit [Mannheimia haemolytica
          serotype A2 str. OVINE]
 gi|153093596|gb|EDN74564.1| integration host factor alpha subunit [Mannheimia haemolytica
          PHL213]
 gi|261309128|gb|EEY10369.1| integration host factor alpha subunit [Mannheimia haemolytica
          serotype A2 str. OVINE]
          Length = 98

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 58/93 (62%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+ ++ +++ ++FGL ++ + +FV   F EI  S   GE +K+S F  F +++K +R 
Sbjct: 2  ALTKIEIAENLIEKFGLEKRVAKQFVELFFEEIRSSLENGEEVKLSGFGNFSLREKKARP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V +  RRVVVFKA   L++R+   
Sbjct: 62 GRNPKTGENVAVSARRVVVFKAGQKLRERVEQA 94


>gi|16126202|ref|NP_420766.1| DNA-binding protein HU [Caulobacter crescentus CB15]
 gi|221234973|ref|YP_002517409.1| DNA-binding protein HU [Caulobacter crescentus NA1000]
 gi|239977107|sp|B8GX11|DBH_CAUCN RecName: Full=DNA-binding protein HU
 gi|239977108|sp|P0CAV2|DBH_CAUCR RecName: Full=DNA-binding protein HU
 gi|13423420|gb|AAK23934.1| DNA-binding protein HU [Caulobacter crescentus CB15]
 gi|220964145|gb|ACL95501.1| DNA-binding protein HU [Caulobacter crescentus NA1000]
          Length = 92

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 42/89 (47%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+++LV +I+++ G+++  +   +      + DS   G+ +++  F TF    + +   R
Sbjct: 3  TKAELVTAIAEKAGINKNQAKDALEAFIEAVTDSLKSGQDVRLVGFGTFKAVTRAAGTAR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N +T + V     +   F+    LK  + 
Sbjct: 63 NPRTGETVNRPASKTARFQVGEGLKSSLN 91


>gi|3334235|sp|P95516|IHFA_PASHA RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|1842235|gb|AAC44843.1| integration host factor Alpha subunit [Mannheimia haemolytica]
          Length = 99

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 57/93 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+ ++ +++ ++FGL ++ +  FV   F EI  S   GE +K+S F  F +++K +R 
Sbjct: 3  ALTKIEIAENLIEKFGLEKRVANEFVELFFEEIRSSLENGEEVKLSGFGNFSLREKKARP 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T + V +  RRVVVFKA   L++R+   
Sbjct: 63 GRNPKTGENVAVSARRVVVFKAGQKLRERVEQA 95


>gi|57238839|ref|YP_179975.1| integration host factor alpha-subunit [Ehrlichia ruminantium str.
          Welgevonden]
 gi|58578769|ref|YP_196981.1| integration host factor alpha-subunit [Ehrlichia ruminantium str.
          Welgevonden]
 gi|58616828|ref|YP_196027.1| integration host factor alpha-subunit [Ehrlichia ruminantium str.
          Gardel]
 gi|57160918|emb|CAH57823.1| putative integration host factor alpha-subunit [Ehrlichia
          ruminantium str. Welgevonden]
 gi|58416440|emb|CAI27553.1| Integration host factor alpha-subunit [Ehrlichia ruminantium str.
          Gardel]
 gi|58417395|emb|CAI26599.1| Integration host factor alpha-subunit [Ehrlichia ruminantium str.
          Welgevonden]
          Length = 99

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 59/96 (61%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++T+T+S + + I+++ GLSR+D+   V  + +E+ ++  +   +KISSF TF   +K 
Sbjct: 1  MTETLTKSKIAEVINRDIGLSREDAASIVGEILDEMINALAKDRILKISSFGTFKSYKKK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          +R+GRN +T +E  I     V F  S ++K  I DD
Sbjct: 61 ARIGRNPKTAEEFIIKEHNTVSFYPSILVKHSINDD 96


>gi|329936537|ref|ZP_08286273.1| DNA-binding protein HU1/hs1 [Streptomyces griseoaurantiacus M045]
 gi|329304052|gb|EGG47934.1| DNA-binding protein HU1/hs1 [Streptomyces griseoaurantiacus M045]
          Length = 93

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV +++    ++RKD+   +      + +   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAAFAETVGEIVAKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           RN QT   ++I     V   A S LK+ 
Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKEA 89


>gi|157803381|ref|YP_001491930.1| DNA-binding protein HU [Rickettsia canadensis str. McKiel]
 gi|157784644|gb|ABV73145.1| DNA-binding protein HU [Rickettsia canadensis str. McKiel]
          Length = 110

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 47/100 (47%), Gaps = 9/100 (9%)

Query: 2   SKTITRSDLVKSI---------SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFA 52
           SK + +++ +  +         +    L++ D+ + +  + + + ++      I I+ F 
Sbjct: 9   SKKMNKTEFIAFMTNHGRNHKHASYKSLTKADAEKALNLVLDSVINAIKSHYNINITGFG 68

Query: 53  TFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           +F +  + +R GRN +T  ++KID      F+A   +K+ 
Sbjct: 69  SFEIHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEA 108


>gi|311068519|ref|YP_003973442.1| putative HU-related DNA-binding protein; phage SPbeta [Bacillus
          atrophaeus 1942]
 gi|310869036|gb|ADP32511.1| putative HU-related DNA-binding protein; phage SPbeta [Bacillus
          atrophaeus 1942]
          Length = 91

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 50/72 (69%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +++++ G+++K++T  V  +F  + ++  +GE IK+S F TF V+++ +R G
Sbjct: 1  MNKAELVGAVAEKLGVTKKEATPKVEAVFEVLAETLSKGEEIKVSGFGTFEVRERAARKG 60

Query: 65 RNLQTNQEVKID 76
          RN Q+ +E+ I 
Sbjct: 61 RNPQSGEEIDIP 72


>gi|309813267|ref|ZP_07706983.1| DNA-binding protein HU [Dermacoccus sp. Ellin185]
 gi|308432763|gb|EFP56679.1| DNA-binding protein HU [Dermacoccus sp. Ellin185]
          Length = 119

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 1/91 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          + + + ++DLV  +    G S+K +   V  + + I      G  + I+ F TF    + 
Sbjct: 8  VGRKMNKADLVDRLEVRLG-SKKAALEAVEAVVDVIIREVAAGNKVGITGFGTFERVDRA 66

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          +R GRN +T + V+I    V  F   +  K 
Sbjct: 67 ARTGRNPRTGEAVRIGATSVPKFTPGTNFKA 97


>gi|171915587|ref|ZP_02931057.1| histone family protein DNA-binding protein [Verrucomicrobium
          spinosum DSM 4136]
          Length = 91

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 5  ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + +++L++++ K  G   S++ ++  V  +   I     +   +++  F TF V ++ +R
Sbjct: 1  MNKAELIEAVQKNLGGDTSKRAASDAVEAVLASISKGVAKTGTVQLIGFGTFKVAKRAAR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN +T + +KI   + V F  SS LK  +
Sbjct: 61 TGRNPKTGEAMKIKASKTVRFVPSSALKGAL 91


>gi|269796894|ref|YP_003316349.1| nucleoid DNA-binding protein [Sanguibacter keddieii DSM 10542]
 gi|269099079|gb|ACZ23515.1| bacterial nucleoid DNA-binding protein [Sanguibacter keddieii DSM
          10542]
          Length = 94

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 52/90 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R+DLV +I+ + GL++ D+   ++ L   + +S   GEA+K++   +    ++ +R 
Sbjct: 2  SLNRTDLVSAIAGKSGLTKTDADAALSALQEVLVESLSAGEAVKVTGLLSVERVERAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+ I     V   A S+LKK +
Sbjct: 62 GRNPRTGEEISIPAGFGVKISAGSLLKKAV 91


>gi|149369658|ref|ZP_01889510.1| DNA-binding protein HU [unidentified eubacterium SCB49]
 gi|149357085|gb|EDM45640.1| DNA-binding protein HU [unidentified eubacterium SCB49]
          Length = 96

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 49/96 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D+V  IS++ G+ + D    V T   E+  S   G+ + +  F +F +K +  + G
Sbjct: 1   MTKADIVAKISEKLGMEKGDVQATVETFMAEVKTSLESGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RN+  N  +KI    +  FK + +  + +  ++  +
Sbjct: 61  RNISKNTTIKIPAHNIPAFKPAKVFVEGVKTNVEVK 96


>gi|229821233|ref|YP_002882759.1| histone family protein DNA-binding protein [Beutenbergia cavernae
          DSM 12333]
 gi|229567146|gb|ACQ80997.1| histone family protein DNA-binding protein [Beutenbergia cavernae
          DSM 12333]
          Length = 93

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 50/90 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R++LV +I+ +  L++  +   ++ L + +  S  +GE +K++   +    ++ +R 
Sbjct: 2  SVNRTELVAAIADKASLTKVQADAALSALQDVLVTSLSKGETVKVTGLLSVERVERAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E++I     V   A S+LK  +
Sbjct: 62 GRNPRTGEEIQIPAGYGVKISAGSVLKSAV 91


>gi|197105274|ref|YP_002130651.1| DNA-binding protein [Phenylobacterium zucineum HLK1]
 gi|196478694|gb|ACG78222.1| DNA-binding protein [Phenylobacterium zucineum HLK1]
          Length = 91

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV +I+ + GL++  +   +      +  S   G  +++  F +F   ++ + + 
Sbjct: 1  MTKAELVSAIADKAGLNKAQAKEALDAFIASVSTSLKAGREVRLVGFGSFVPVKRAAGMA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T ++V+    +   F+    LK  + 
Sbjct: 61 RNPRTGEKVRRPASQTCRFRVGEALKSTLN 90


>gi|300774175|ref|ZP_07084043.1| DNA-binding protein HU [Sphingobacterium spiritivorum ATCC 33861]
 gi|300758986|gb|EFK55814.1| DNA-binding protein HU [Sphingobacterium spiritivorum ATCC 33861]
          Length = 135

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 48/94 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+++++  IS + GL + D    V   F  + +S + GE + +  F +F VK++  +  
Sbjct: 42  MTKAEIIAEISNKTGLEKVDVQETVEAFFKVVKNSMIGGENVYVRGFGSFVVKKRAEKTA 101

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           RN+  N  + I    V  FK + +  +++ +  +
Sbjct: 102 RNISKNTAIIIPEHFVPSFKPAKVFVEKVKNGNK 135


>gi|116695179|ref|YP_840755.1| HU family DNA-binding protein [Ralstonia eutropha H16]
 gi|113529678|emb|CAJ96025.1| DNA-binding protein HU family [Ralstonia eutropha H16]
          Length = 93

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +I+ E  LS   + R +    + I  +  +G+++ +  F +F   ++ +R G
Sbjct: 1  MNKGELVSAIAAEAELSNAAAERALNAALDSIKKAVAKGDSVTLVGFGSFSAGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + +KI   + V F A    K  +  
Sbjct: 61 RNPRTGETIKIPAAKTVKFSAGQGFKDAVNK 91


>gi|254453509|ref|ZP_05066946.1| integration host factor, beta subunit [Octadecabacter antarcticus
          238]
 gi|254455028|ref|ZP_05068464.1| integration host factor, beta subunit [Octadecabacter antarcticus
          238]
 gi|198263730|gb|EDY88001.1| integration host factor, beta subunit [Octadecabacter antarcticus
          238]
 gi|198267915|gb|EDY92185.1| integration host factor, beta subunit [Octadecabacter antarcticus
          238]
          Length = 95

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS+L   I+ +   L  + +   V T+F  I  +  RG  ++I  F  F  +Q+  R+
Sbjct: 2  MIRSELYAKIAAENRHLMHEQAVAVVDTIFETITAALERGNRVEIRGFGAFSCRQREGRI 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +    V + P+ +  FK   +++ R+ 
Sbjct: 62 GRNPKNGASVDVAPKVIPWFKLGKVIRDRLN 92


>gi|91200990|emb|CAJ74047.1| unknown protein [Candidatus Kuenenia stuttgartiensis]
          Length = 103

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 52/102 (50%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T T+ DL + I+++   +     + +    +EI     +G  I++  F  F ++Q+ +R
Sbjct: 2   QTTTKRDLCEKIARKTDNTHMVVKKTIQMFLDEIIGELSQGNRIELRDFGVFEIRQRAAR 61

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
             RN +T +   +  + VVVFK   ++++++ +  + +   +
Sbjct: 62  KARNPRTGEVAFVPSKNVVVFKVGKLMREKVGNSPQTQPPAQ 103


>gi|73666740|ref|YP_302756.1| histone-like DNA-binding protein [Ehrlichia canis str. Jake]
 gi|72393881|gb|AAZ68158.1| Histone-like bacterial DNA-binding protein [Ehrlichia canis str.
          Jake]
          Length = 100

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 61/96 (63%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++T+T+S + + I+K+ GLSR+D+   V  + +E+ ++ VR   +KISSF TF   +K 
Sbjct: 1  MTQTLTKSKIAEVINKDVGLSREDAASIVGEVLDEMINALVRDHILKISSFGTFKSYKKK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          +R+GRN +T++   I  R  V F  S ++K  I +D
Sbjct: 61 ARMGRNPKTSEAFVIKERNTVSFYPSILVKHSINND 96


>gi|239813722|ref|YP_002942632.1| histone family protein DNA-binding protein [Variovorax paradoxus
          S110]
 gi|239800299|gb|ACS17366.1| histone family protein DNA-binding protein [Variovorax paradoxus
          S110]
          Length = 125

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +LV+ I+    +S+ ++ R + T+   I  +  +G+ +++  F TF    + +R G
Sbjct: 1  MNRIELVEKIATAHNVSKAEAARILETVTGSIVAAVKKGDPVQLIGFGTFKQVARAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N Q   ++KI  ++V  F   +  K  I
Sbjct: 61 FNPQAGAKIKIAAQKVPKFVPGAAFKAAI 89


>gi|293371796|ref|ZP_06618206.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
 gi|292633248|gb|EFF51819.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
          Length = 88

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+K ++ +  LS  ++T  V  +   I ++  +GE + +  F +F ++ + +R G
Sbjct: 1  MNKSELIKEVALKRKLSFNEATNAVDAIMEAIAETMHKGEGVTLVGFGSFVIQGRKARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N  T   + I  +R V F+  S +K
Sbjct: 61 HNPATGGSMLIPAKRQVKFRPGSKMK 86


>gi|239928724|ref|ZP_04685677.1| histone-like DNA binding protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291437048|ref|ZP_06576438.1| DNA-binding protein HU 2 [Streptomyces ghanaensis ATCC 14672]
 gi|291339943|gb|EFE66899.1| DNA-binding protein HU 2 [Streptomyces ghanaensis ATCC 14672]
          Length = 212

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1   MNKAQLVEAIADKMG-GRQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           RN QT + V++    V  F+A    K  +    +  K +     +P GS
Sbjct: 60  RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKKLPKNDIAVKKAPKGS 108


>gi|118602642|ref|YP_903857.1| histone family protein DNA-binding protein [Candidatus Ruthia
          magnifica str. Cm (Calyptogena magnifica)]
 gi|118567581|gb|ABL02386.1| histone family protein DNA-binding protein [Candidatus Ruthia
          magnifica str. Cm (Calyptogena magnifica)]
          Length = 95

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 52/89 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +IT+ D+  ++ K   ++   +       F++I  +   GE++K+SSF  F +++K SR 
Sbjct: 2  SITKKDIASALVKSMDITHVQALAITHDFFDQIKQTLASGESVKLSSFGNFVIREKSSRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T + V+I  R+VVVFK+   LK  
Sbjct: 62 GRNPKTGELVEILARKVVVFKSGLKLKSA 90


>gi|184200009|ref|YP_001854216.1| HU_IHF family transcriptional regulator [Kocuria rhizophila
          DC2201]
 gi|183580239|dbj|BAG28710.1| putative DNA-binding protein HU [Kocuria rhizophila DC2201]
          Length = 94

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + RS+LV  ++++ G ++      + +LF     S  +GE I I  + +     + +R 
Sbjct: 2  AMNRSELVAEVAEKSGNTQAAVNGVLDSLFEVFESSVSKGEKITIPGWMSVERTDRAARQ 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QT + ++I     V   A S LK  +
Sbjct: 62 GRNPQTGEAIQIPAGHGVKLTAGSKLKAAV 91


>gi|313886994|ref|ZP_07820694.1| putative DNA-binding protein HU [Porphyromonas asaccharolytica
          PR426713P-I]
 gi|332299884|ref|YP_004441805.1| histone family protein DNA-binding protein [Porphyromonas
          asaccharolytica DSM 20707]
 gi|312923520|gb|EFR34329.1| putative DNA-binding protein HU [Porphyromonas asaccharolytica
          PR426713P-I]
 gi|332176947|gb|AEE12637.1| histone family protein DNA-binding protein [Porphyromonas
          asaccharolytica DSM 20707]
          Length = 90

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 46/85 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++VKSI+   GL R++  + V    + + ++  +G+ + +  F +F VK++  +  
Sbjct: 1  MTKAEVVKSIADTTGLDRQEVLQVVEAFMDTVKNAMSQGDNVYLRGFGSFVVKERAEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+     + +  R+V  FK S   
Sbjct: 61 RNISKQTTIIVPARKVPTFKPSKAF 85


>gi|297571677|ref|YP_003697451.1| histone family protein DNA-binding protein [Arcanobacterium
          haemolyticum DSM 20595]
 gi|296932024|gb|ADH92832.1| histone family protein DNA-binding protein [Arcanobacterium
          haemolyticum DSM 20595]
          Length = 93

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 54/92 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R++L+  I++E  +++ D+ + ++ L + + +S  +GEA+KI+   +    ++ +R 
Sbjct: 2  SLNRTELIAKIAEEASITKTDADKAISALQSVLVESLAKGEAVKITGLMSVERTERAARK 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +E+KI     V   A S LKK +  
Sbjct: 62 GRNPRTGEEIKIPAGYGVKISAGSTLKKAVAK 93


>gi|86608376|ref|YP_477138.1| DNA-binding protein HU [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556918|gb|ABD01875.1| DNA-binding protein HU [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 101

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV----RGE---AIKISSFATFHVK 57
          + +++LV +++    +++K++   ++     I +        GE    + +  F +F  +
Sbjct: 1  MNKAELVDAVAHRANVTKKEAEAVISAALEIIVEEVASRDENGEPKGKVILVGFGSFEAR 60

Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          ++  R GRN +TNQ++ I  R V  F A    ++ +   
Sbjct: 61 KRKEREGRNPKTNQKMVIPERIVPTFAAGKSFREAVAGG 99


>gi|325284684|ref|YP_004264147.1| histone family protein DNA-binding protein [Deinococcus
          proteolyticus MRP]
 gi|324316173|gb|ADY27287.1| histone family protein DNA-binding protein [Deinococcus
          proteolyticus MRP]
          Length = 89

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 50/86 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S LV+ ++++ GL++K +   V+T+ + + ++   G+A+ +    T  VK+  +R G
Sbjct: 1  MNKSQLVEKVAEQTGLTKKQADEAVSTMLDTVVEALRGGQAVGLPGLGTLSVKETAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
              T ++++I   + V FK ++ LK
Sbjct: 61 VKPGTTEKIQIPAGKKVAFKVATTLK 86


>gi|68171301|ref|ZP_00544701.1| Histone-like bacterial DNA-binding protein [Ehrlichia chaffeensis
          str. Sapulpa]
 gi|88657660|ref|YP_506989.1| integration host factor, alpha subunit [Ehrlichia chaffeensis
          str. Arkansas]
 gi|67999282|gb|EAM85931.1| Histone-like bacterial DNA-binding protein [Ehrlichia chaffeensis
          str. Sapulpa]
 gi|88599117|gb|ABD44586.1| integration host factor, alpha subunit [Ehrlichia chaffeensis
          str. Arkansas]
          Length = 100

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 62/96 (64%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++T+T+S + + I+++ GLSR+D++  V  + +E+ ++ V+   +KISSF TF   +K 
Sbjct: 1  MTQTLTKSKIAEVINRDVGLSREDASSVVGEILDEMLNALVKDRILKISSFGTFKSYKKK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          +R+GRN +T++E  I  R  V F  S ++K  I  D
Sbjct: 61 ARMGRNPKTSEEFVIKERYTVSFYPSILIKHSINSD 96


>gi|157825356|ref|YP_001493076.1| DNA-binding protein HU [Rickettsia akari str. Hartford]
 gi|157799314|gb|ABV74568.1| DNA-binding protein HU [Rickettsia akari str. Hartford]
          Length = 110

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 3   KTITRSDLVKSISKEFG---------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53
           K + +++ +  ++             L++ D+ + +  + + +  +      I I+ F +
Sbjct: 10  KKMNKTEFIAFMTDHAHNHKHASHKTLTKADAEKALNLVLDSVISAIRSHYNINITGFGS 69

Query: 54  FHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           F +  + +R GRN +T  ++KID      F+A   +K+ 
Sbjct: 70  FEIHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEA 108


>gi|73537872|ref|YP_298239.1| HU family DNA-binding protein [Ralstonia eutropha JMP134]
 gi|94313671|ref|YP_586880.1| histone-like DNA-binding protein [Cupriavidus metallidurans CH34]
 gi|72121209|gb|AAZ63395.1| HU family DNA-binding protein [Ralstonia eutropha JMP134]
 gi|93357523|gb|ABF11611.1| Histone-like bacterial DNA-binding protein [Cupriavidus
          metallidurans CH34]
          Length = 93

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +I+ E  LS   + R +    + I  +  +G+++ +  F +F   ++ +R G
Sbjct: 1  MNKGELVSAIAAEAELSNAAAERALNAALDSIKKAVAKGDSVTLVGFGSFSSGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + +KI   + V F A    K  +  
Sbjct: 61 RNPRTGETIKIPAAKTVKFSAGQGFKDAVNK 91


>gi|253582214|ref|ZP_04859437.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251835753|gb|EES64291.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 92

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+ + +    ++    ++ D+ +        I +  V GE I    F  F V  + +R 
Sbjct: 1  MTKKEFIDLYFEKGEFATKIDAEKKAAAFLAVIEEGLVSGEDITFLGFGKFEVADRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN QT +E++++ ++VV FKA   L +++  
Sbjct: 61 CRNPQTGEEMEVEAKKVVKFKAGKGLSEKVNQ 92


>gi|149072008|ref|YP_001293578.1| DNA binding protein hu-like protein [Rhodomonas salina]
 gi|134302959|gb|ABO70763.1| DNA binding protein hu-like protein [Rhodomonas salina]
          Length = 92

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLV+ ++K+  L++K+S   +TT+   I  +   GE + +  F +F  +++ +R G
Sbjct: 1  MNKKDLVEIVAKKRNLTKKESEEIITTILETIIKTVSEGEKVTLVGFGSFEARERQAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + ++I   RV  F      K ++ +
Sbjct: 61 RNPKTGERLQIPASRVPTFSVGKFFKDKVSN 91


>gi|317503239|ref|ZP_07961297.1| DNA-binding protein HU [Prevotella salivae DSM 15606]
 gi|315665652|gb|EFV05261.1| DNA-binding protein HU [Prevotella salivae DSM 15606]
          Length = 97

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 48/96 (50%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +   + +  ++   G ++ D  + V TL   + +S   GE + +S F TF VK++  RV 
Sbjct: 1   MNNKEFISEMALRSGYTQADVQKLVNTLIEGMGNSFEAGENVSLSGFGTFEVKKRMERVV 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
            N  T   + + P+ V+ FK ++ +K+++ +     
Sbjct: 61  VNPSTGLRMLVPPKLVLAFKPNASVKEKLKNGGENN 96


>gi|328885294|emb|CCA58533.1| Integration host factor beta subunit [Streptomyces venezuelae ATCC
           10712]
          Length = 234

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 2/110 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1   MNKAQLVEAIADKMG-GRQQAAEAVDHVLDAIVRAVVGGDRVSVTGFGSFEKVDRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV-TSPSGS 113
           RN QT + V++    V  F+A    K  +    +  K  +  V  +P GS
Sbjct: 60  RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKKLPKGGEVSVKKAPKGS 109


>gi|294631600|ref|ZP_06710160.1| DNA-binding protein HU [Streptomyces sp. e14]
 gi|292834933|gb|EFF93282.1| DNA-binding protein HU [Streptomyces sp. e14]
          Length = 212

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1   MNKAQLVEAIADKMG-GRQQAADAVDAVLDAIVRAVVGGDRVSVTGFGSFEKVDRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           RN QT + V++    V  F+A    K  +    +  K +     +P GS
Sbjct: 60  RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKKLPKNDIAVKKAPKGS 108


>gi|103488110|ref|YP_617671.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256]
 gi|98978187|gb|ABF54338.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256]
          Length = 91

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  SDL  +++   G+S+ D+ ++V  +F  I D+A +GE I ++ F  F VK   +R G
Sbjct: 1  MNNSDLADALAASNGISKSDARKYVDGVFAAIADAAAKGEEISLNGFGKFKVKDSPAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T + ++I   + + F  +  +K ++  
Sbjct: 61 RNPSTGETIQIAASKKLTFAPAKAVKDKLNG 91


>gi|67459500|ref|YP_247124.1| DNA-binding protein HU [Rickettsia felis URRWXCal2]
 gi|239946853|ref|ZP_04698606.1| DNA-binding protein HU [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|67005033|gb|AAY61959.1| DNA-binding protein HU [Rickettsia felis URRWXCal2]
 gi|239921129|gb|EER21153.1| DNA-binding protein HU [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 110

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 3   KTITRSDLVKSI---------SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53
           K + +++ +  +         +    L++ D+ + +  + + +  +      I I+ F +
Sbjct: 10  KKMNKTEFIAFMTDHGHNHKHASHKTLTKADAEKALNLVLDSVISAIKSHHNINITGFGS 69

Query: 54  FHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           F +  + +R GRN +T  ++KID      F+A   +K+ 
Sbjct: 70  FEIHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEA 108


>gi|242281191|ref|YP_002993320.1| histone family protein DNA-binding protein [Desulfovibrio
          salexigens DSM 2638]
 gi|242124085|gb|ACS81781.1| histone family protein DNA-binding protein [Desulfovibrio
          salexigens DSM 2638]
          Length = 97

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 48/94 (51%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            T+T++ +V  I ++   +R +    V ++ + +  +  +  A+ IS F  F    K +
Sbjct: 4  GNTLTKASVVDYIYEKTDRNRAEIKELVESILDIMKQAVKKDHAMLISGFGKFEAYDKNA 63

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          R GRN QTN+ + +  R+VVVF+ S   +  +  
Sbjct: 64 RKGRNPQTNEAITLPARKVVVFRLSRKFRAELNG 97


>gi|302384103|ref|YP_003819926.1| histone family protein DNA-binding protein [Brevundimonas
          subvibrioides ATCC 15264]
 gi|302194731|gb|ADL02303.1| histone family protein DNA-binding protein [Brevundimonas
          subvibrioides ATCC 15264]
          Length = 92

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+++L+ +++K+ G+S+ D+ R +      I  S + G  ++IS+   F    + +R GR
Sbjct: 3  TQAELIAAVAKDAGVSQADAGRVLEAFVKNIHSSLIAGGDVRISNLGVFDTAARAAREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N  T   +KI   + V F+ S  LK  +  
Sbjct: 63 NPATGATIKIAASKAVRFRVSKPLKDAVNK 92


>gi|291059654|gb|ADD72389.1| DNA-binding protein HU [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 154

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           TRS +V ++  E  LSR+   R V +  + +  +  RGE +++  F  F  + + + VG+
Sbjct: 56  TRSFVVDALCDEVDLSRRHVARVVDSFVSVVTAALERGETVELRDFGVFESRVRKASVGK 115

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           +++T + V I    VVVF+ S  LK  +     G 
Sbjct: 116 SIKTGEVVSIPSHCVVVFRPSKRLKSAVRGYRSGE 150


>gi|34499324|ref|NP_903539.1| DNA-binding protein HU-beta [Chromobacterium violaceum ATCC
          12472]
 gi|34105175|gb|AAQ61531.1| probable DNA-binding protein hu-beta [Chromobacterium violaceum
          ATCC 12472]
          Length = 89

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L+  +S + GL++ D  R +      + D+      I I +   F VK+  +R G
Sbjct: 1  MTKAELIALLSDKSGLTKADVLRVLGAFDEVLLDTLADNGEISIVA-GKFKVKETAARTG 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + ++I  +R V F AS  LK RI 
Sbjct: 60 RNPKTGETIQIAAKRKVSFVASKQLKDRIA 89


>gi|329936762|ref|ZP_08286469.1| histone-like DNA binding protein [Streptomyces griseoaurantiacus
           M045]
 gi|329303992|gb|EGG47875.1| histone-like DNA binding protein [Streptomyces griseoaurantiacus
           M045]
          Length = 222

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 1/100 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1   MNKAQLVEAIADKMG-GRQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           RN QT + V++    V  F+A    K  +    +  K  +
Sbjct: 60  RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKKLPKGGE 99


>gi|296446427|ref|ZP_06888371.1| histone family protein DNA-binding protein [Methylosinus
          trichosporium OB3b]
 gi|296256062|gb|EFH03145.1| histone family protein DNA-binding protein [Methylosinus
          trichosporium OB3b]
          Length = 94

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV+ +++    S+  +T  +  +   I  +  +GE +++  F TF VK++ + VG
Sbjct: 2  VNKLELVEHVAEATDTSKAAATAAIDAVLEGITMALKKGEEVRLVGFGTFSVKKRAAGVG 61

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T +E++I       FK  + LK  +  
Sbjct: 62 RNPATGEEIQIPESTSARFKPGATLKAALNK 92


>gi|257463308|ref|ZP_05627706.1| histone family protein DNA-binding protein [Fusobacterium sp.
          D12]
 gi|317060887|ref|ZP_07925372.1| DNA-binding protein HU [Fusobacterium sp. D12]
 gi|313686563|gb|EFS23398.1| DNA-binding protein HU [Fusobacterium sp. D12]
          Length = 93

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V +++K+  ++ K++ R +      + +S V G  +K   F T+  K++ +R  
Sbjct: 1  MTKKEFVAALAKKAEVTGKEADRMLKCFLELVEESLVAGNDVKFIGFGTWETKKREARKL 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI  +RVV FK    L  ++ 
Sbjct: 61 RNPQTGKEMKIAAKRVVKFKVGKALADKVA 90


>gi|225174944|ref|ZP_03728941.1| histone family protein DNA-binding protein [Dethiobacter
          alkaliphilus AHT 1]
 gi|225169584|gb|EEG78381.1| histone family protein DNA-binding protein [Dethiobacter
          alkaliphilus AHT 1]
          Length = 84

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 45/81 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D+ +SI+++  +  KD+   V  L + I +S   GEA+K++ F TF ++    R  
Sbjct: 1  MIKTDVARSIAEKLNIQVKDAETTVNGLIDTITESLSAGEAVKLAGFGTFDLRHAPERAA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKA 85
          RN +T + V++       F+A
Sbjct: 61 RNPKTGETVQVPATHYPTFRA 81


>gi|290959979|ref|YP_003491161.1| DNA-binding protein HU1/hs1 [Streptomyces scabiei 87.22]
 gi|260649505|emb|CBG72620.1| DNA-binding protein HU1/hs1 [Streptomyces scabiei 87.22]
          Length = 93

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV +++    ++RKD+   +      + D   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDIVAKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           RN QT   ++I     V   A S LK+ 
Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKEA 89


>gi|71907290|ref|YP_284877.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB]
 gi|71846911|gb|AAZ46407.1| Histone-like bacterial DNA-binding protein [Dechloromonas
          aromatica RCB]
          Length = 94

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 7  RSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          RS+L + + + F  L+R D    V  +   I     +G  +++  F +F +  +  R+GR
Sbjct: 4  RSELSQRLHQRFPQLNRGDIDVAVGEILGAIGQQLAKGGRVEVRGFGSFALNYRPPRLGR 63

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93
          N  T + V +  +    FKA   L++ +
Sbjct: 64 NPMTGERVAVPAKWTPHFKAGKELRELV 91


>gi|167854637|ref|ZP_02477417.1| integration host factor, alpha chain [Haemophilus parasuis 29755]
 gi|219870912|ref|YP_002475287.1| integration host factor subunit alpha [Haemophilus parasuis
          SH0165]
 gi|254803517|sp|B8F4T7|IHFA_HAEPS RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|167854174|gb|EDS25408.1| integration host factor, alpha chain [Haemophilus parasuis 29755]
 gi|219691116|gb|ACL32339.1| integration host factor, alpha chain/bacterial nucleoid
          DNA-binding protein [Haemophilus parasuis SH0165]
          Length = 98

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 57/93 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+ ++ +++ +  GL ++ + +FV   F EI  S   GE +K+S F  F V+ K +R 
Sbjct: 2  ALTKIEIAENLVERCGLDKRIAKQFVEDFFEEIRRSLESGEEVKLSGFGNFTVRDKKARP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN +T ++V +  RRVVVFKA   L++R+ + 
Sbjct: 62 GRNPKTGEDVAVSARRVVVFKAGQKLRERVENA 94


>gi|85716441|ref|ZP_01047413.1| Histone-like DNA-binding protein [Nitrobacter sp. Nb-311A]
 gi|85696798|gb|EAQ34684.1| Histone-like DNA-binding protein [Nitrobacter sp. Nb-311A]
          Length = 112

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T   L  +++++  LS+K +   +T +   I     +G+ I+I       V+++ +R 
Sbjct: 23  TVTLKHLAAALAEDHELSKKAAEAILTDMVTRITKHLKKGDRIRIVGLGILQVRKRAARK 82

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN  T +E++I   + V F+A+  LK+ I
Sbjct: 83  GRNPATGEEIQIKASKKVAFRAAKELKEAI 112


>gi|260904564|ref|ZP_05912886.1| HU_IHF family transcriptional regulator [Brevibacterium linens
          BL2]
          Length = 95

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K   RS+LV  +++  GL++K  +  +  +F+   D   +GE + I  + +    ++ 
Sbjct: 1  MAK--NRSELVAEVAENSGLTQKQVSDVLDGVFDVFSDVVGKGEKLTIPGWLSVERTERA 58

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          +R GRN QT +E++I     V   A S LK  
Sbjct: 59 ARKGRNPQTGEEIQIKAGYSVKLSAGSKLKAA 90


>gi|118602598|ref|YP_903813.1| histone family protein DNA-binding protein [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567537|gb|ABL02342.1| histone family protein DNA-binding protein [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 101

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 47/91 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++DL+ ++S    LS+ D+   V  +  E+    V G+ I+I  F  F+ K +  R G
Sbjct: 10  MKKTDLILNLSDSSDLSKIDAKIAVEVILQELTQGIVSGQGIEIRGFGGFYKKHRKPRQG 69

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            N +T++  ++  + V  FK   +LK+ +  
Sbjct: 70  INPKTSERTQVGEKFVPFFKPGKLLKEIVNK 100


>gi|301061082|ref|ZP_07201879.1| putative integration host factor subunit alpha [delta
          proteobacterium NaphS2]
 gi|300444876|gb|EFK08844.1| putative integration host factor subunit alpha [delta
          proteobacterium NaphS2]
          Length = 93

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 51/91 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+  +++ I K+    + +  R   +L   +  +   GE I IS F  F V++K +R 
Sbjct: 2  TLTKERIIERIWKDTDQKKAEIQRTFESLVEIMKQTLASGEDIMISGFGKFCVREKKARR 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN QT + + +D R+VV FK S  L++++ 
Sbjct: 62 GRNPQTGEAMDLDGRKVVTFKCSGKLREKLN 92


>gi|318056820|ref|ZP_07975543.1| DNA-binding protein HU 1 [Streptomyces sp. SA3_actG]
 gi|318080704|ref|ZP_07988036.1| DNA-binding protein HU 1 [Streptomyces sp. SA3_actF]
          Length = 107

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
           + RS+LV +++    ++RKD+   +      + D   +G E + I  F TF    + +R 
Sbjct: 15  MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDVVAKGDEKVTIPGFLTFERTHRAART 74

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
            RN QT + ++I     V   A S LK+ 
Sbjct: 75  ARNPQTGEPIQIAAGYSVKVSAGSKLKEA 103


>gi|146277321|ref|YP_001167480.1| histone family protein DNA-binding protein [Rhodobacter
          sphaeroides ATCC 17025]
 gi|146278163|ref|YP_001168322.1| histone family protein DNA-binding protein [Rhodobacter
          sphaeroides ATCC 17025]
 gi|145555562|gb|ABP70175.1| histone family protein DNA-binding protein [Rhodobacter
          sphaeroides ATCC 17025]
 gi|145556404|gb|ABP71017.1| histone family protein DNA-binding protein [Rhodobacter
          sphaeroides ATCC 17025]
          Length = 90

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ + +SDLV +++++ G+SR      +    ++I ++   G++I ++ F +F  + + 
Sbjct: 1  MTR-LNKSDLVSTVAEKVGVSRLAVQTVLDEAVDQIANAVRCGDSITLTGFGSFKPRHRP 59

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86
          +R GRN +T + V I     + F  S
Sbjct: 60 ARTGRNPRTGEAVAIPASTSIGFTPS 85


>gi|197294415|ref|YP_001798956.1| nucleoid DNA-binding protein [Candidatus Phytoplasma
          australiense]
 gi|197294469|ref|YP_001799010.1| nucleoid DNA-binding protein [Candidatus Phytoplasma
          australiense]
 gi|171853742|emb|CAM11665.1| Bacterial nucleoid DNA-binding protein [Candidatus Phytoplasma
          australiense]
 gi|171853796|emb|CAM11731.1| Bacterial nucleoid DNA-binding protein [Candidatus Phytoplasma
          australiense]
          Length = 95

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKI-SSFATFHVKQKGSRV 63
          +T+ +L+++I+K   +S   +  F       + ++    + + +  S  TF ++ + +R+
Sbjct: 1  MTKKELIRAIAKRQNISIVQTEEFYNAFEQVLFEAIAANDEVILSPSIGTFALRHRQARL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN QT ++++I  +  VVF+ S  +K+ + D
Sbjct: 61 GRNPQTGEQIEIPEKTAVVFRPSRTIKEEVRD 92


>gi|20137641|sp|Q92J57|DBH_RICCN RecName: Full=DNA-binding protein HU
          Length = 99

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 44/97 (45%), Gaps = 9/97 (9%)

Query: 5  ITRSDLVKSI---------SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55
          + +++ +  +         +    L++ ++ + +  + + +  +      I I+ F +F 
Sbjct: 1  MNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFE 60

Query: 56 VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          +  + +R GRN +T  ++KID      F+A   +K+ 
Sbjct: 61 IHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEA 97


>gi|333024856|ref|ZP_08452920.1| putative DNA-binding protein HU (hs1) [Streptomyces sp. Tu6071]
 gi|332744708|gb|EGJ75149.1| putative DNA-binding protein HU (hs1) [Streptomyces sp. Tu6071]
          Length = 112

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
           + RS+LV +++    ++RKD+   +      + D   +G E + I  F TF    + +R 
Sbjct: 20  MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDVVAKGDEKVTIPGFLTFERTHRAART 79

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
            RN QT + ++I     V   A S LK+ 
Sbjct: 80  ARNPQTGEPIQIAAGYSVKVSAGSKLKEA 108


>gi|256830730|ref|YP_003159458.1| histone family protein DNA-binding protein [Desulfomicrobium
          baculatum DSM 4028]
 gi|256579906|gb|ACU91042.1| histone family protein DNA-binding protein [Desulfomicrobium
          baculatum DSM 4028]
          Length = 97

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 54/93 (58%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + T+T++++V SI ++   +R +    V T+ + + ++  +  ++ IS F  F   +K +
Sbjct: 3  NNTLTKAEIVDSIYEKSERNRAEVKAQVETMLDIMKEAVKKDHSLLISGFGKFEAYEKDA 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          R GRN QT++ + +  R+VVVF+ S  L+  + 
Sbjct: 63 RKGRNPQTSESIILSERKVVVFRISRKLRAELN 95


>gi|294787476|ref|ZP_06752729.1| DNA-binding protein HU [Parascardovia denticolens F0305]
 gi|315226953|ref|ZP_07868741.1| DNA-binding protein HU [Parascardovia denticolens DSM 10105]
 gi|294484832|gb|EFG32467.1| DNA-binding protein HU [Parascardovia denticolens F0305]
 gi|315121085|gb|EFT84217.1| DNA-binding protein HU [Parascardovia denticolens DSM 10105]
          Length = 92

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 45/89 (50%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +SDLV  I+++  L++  S   V      + +S   GE ++++   +    ++ +R GR
Sbjct: 4  NKSDLVAKIAQKTSLTKAQSEAAVNAFQEVLVESLKSGEGLRLTGVLSASRVKRAARTGR 63

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N +T + + I     V  +A S+LKK + 
Sbjct: 64 NPRTGETINIPAGYGVKLQAGSLLKKAVA 92


>gi|238898892|ref|YP_002924574.1| integration host factor (IHF), DNA-binding protein, alpha subunit
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229466652|gb|ACQ68426.1| integration host factor (IHF), DNA-binding protein, alpha subunit
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 107

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 4/103 (3%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE--AIKISSFATFHVKQKGS 61
           TIT++D++  +S++FGL  K+S   +   F EI       E   +K S F  F+++ K +
Sbjct: 2   TITKADILDDVSEKFGLEPKESKDLLELFFEEIRCILGDEECSELKFSGFGNFNLRDKKA 61

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           R GRN +T ++V I  RRVV F A   LK  I +     KC+K
Sbjct: 62  RPGRNPKTGEDVLIKKRRVVTFHAGLKLKTLIENG--NEKCSK 102


>gi|34580834|ref|ZP_00142314.1| DNA-binding protein HU [Rickettsia sibirica 246]
 gi|157828089|ref|YP_001494331.1| DNA-binding protein HU [Rickettsia rickettsii str. 'Sheila Smith']
 gi|238651025|ref|YP_002916882.1| DNA-binding protein HU [Rickettsia peacockii str. Rustic]
 gi|28262219|gb|EAA25723.1| DNA-binding protein HU [Rickettsia sibirica 246]
 gi|157800570|gb|ABV75823.1| DNA-binding protein HU [Rickettsia rickettsii str. 'Sheila Smith']
 gi|238625123|gb|ACR47829.1| DNA-binding protein HU [Rickettsia peacockii str. Rustic]
          Length = 110

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 3   KTITRSDLVKSI---------SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53
           K + +++ +  +         +    L++ ++ + +  + + +  +      I I+ F +
Sbjct: 10  KKMNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGS 69

Query: 54  FHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           F +  + +R GRN +T  ++KID      F+A   +K+ 
Sbjct: 70  FEIHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEA 108


>gi|239944579|ref|ZP_04696516.1| putative histone-like DNA-binding protein [Streptomyces roseosporus
           NRRL 15998]
 gi|239991041|ref|ZP_04711705.1| putative histone-like DNA-binding protein [Streptomyces roseosporus
           NRRL 11379]
 gi|291448042|ref|ZP_06587432.1| DNA-binding protein HU 2 [Streptomyces roseosporus NRRL 15998]
 gi|291350989|gb|EFE77893.1| DNA-binding protein HU 2 [Streptomyces roseosporus NRRL 15998]
          Length = 217

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1   MNKAQLVEAIADKVG-GRQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           RN QT + V++    V  F+A    K  +    +  K +     +P GS
Sbjct: 60  RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKKLPKNDVAVKKAPKGS 108


>gi|330837189|ref|YP_004411830.1| histone family protein DNA-binding protein [Spirochaeta coccoides
          DSM 17374]
 gi|329749092|gb|AEC02448.1| histone family protein DNA-binding protein [Spirochaeta coccoides
          DSM 17374]
          Length = 104

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + +T++ +++++ ++  L+R D    +   F EI +     + I++  F TF V+ +  R
Sbjct: 5  EKLTKAAIIENLHQKLNLNRSDIHMVLDEFFEEIKNGLQEDKIIELRGFGTFEVRTRKGR 64

Query: 63 -VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             RN +T   V +D   V +F+    LK  + D
Sbjct: 65 EKARNPKTGDVVAVDTHGVAIFRPGKELKDYVWD 98


>gi|239930957|ref|ZP_04687910.1| DNA-binding protein HU (hs1) [Streptomyces ghanaensis ATCC 14672]
 gi|291439334|ref|ZP_06578724.1| HSl protein [Streptomyces ghanaensis ATCC 14672]
 gi|291342229|gb|EFE69185.1| HSl protein [Streptomyces ghanaensis ATCC 14672]
          Length = 93

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV +++    ++RKD+   +      + D   +G E + +  F TF    + +R 
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDIVSKGDEKVTVPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           RN QT + ++I     V   A S LK+ 
Sbjct: 61 ARNPQTGEPIQIPAGYSVKVSAGSKLKEA 89


>gi|241589902|ref|YP_002979927.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12D]
 gi|240868614|gb|ACS66273.1| histone family protein DNA-binding protein [Ralstonia pickettii
          12D]
          Length = 94

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 44/92 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R DL K+I+     S     R++      + D+   G+ ++I  F TF   ++ +R G
Sbjct: 1  MNRKDLAKAIADRSNTSSAQVMRWLDAFEKVVTDAVASGDVVQIMGFGTFSTSRRRARNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N  T +E+++     V F A S L++ +  +
Sbjct: 61 HNPGTGEEIQVPAVTTVRFSAGSRLRQAVNRE 92


>gi|297569210|ref|YP_003690554.1| histone family protein DNA-binding protein [Desulfurivibrio
          alkaliphilus AHT2]
 gi|296925125|gb|ADH85935.1| histone family protein DNA-binding protein [Desulfurivibrio
          alkaliphilus AHT2]
          Length = 97

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 58/95 (61%), Gaps = 1/95 (1%)

Query: 1  MSKT-ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          M++  +TR DL K+I+++ G S++ +   V  +F+ +  + +  E IK+  F TF+V++K
Sbjct: 1  MNRANLTRKDLAKAINEKMGFSQRSAADLVDIVFDRLKATLLAEEPIKLVQFGTFNVRRK 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            R GRN +T   ++I  R ++ F+ S  +++RI 
Sbjct: 61 SPRQGRNPRTGDPMEISKRSMISFRPSKSVRERIN 95


>gi|229496570|ref|ZP_04390284.1| DNA-binding protein HU [Porphyromonas endodontalis ATCC 35406]
 gi|229316467|gb|EEN82386.1| DNA-binding protein HU [Porphyromonas endodontalis ATCC 35406]
          Length = 96

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV  I+K  GL R +  R V T  + + D   +G  I +  F +F ++++  ++ 
Sbjct: 1  MTKADLVAQIAKRTGLDRDEVLRTVETFMDVVKDEMAQGNNIYLRGFGSFVIRERAQKIA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN+   + + I    V  FK S +  + +
Sbjct: 61 RNISKKEAIIIPKHNVPSFKPSKVFSEML 89


>gi|308808790|ref|XP_003081705.1| unnamed protein product [Ostreococcus tauri]
 gi|116060170|emb|CAL56229.1| unnamed protein product [Ostreococcus tauri]
          Length = 123

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 42/91 (46%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +  L+ +++ E G ++    R +   F+ I  +   G+ + IS F TF  K + +R G
Sbjct: 31  LNKKTLIDAVAAETGETKASVGRVLNACFDVIGATVQSGDKVAISKFGTFARKTRAARDG 90

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN  T   +KI       F ASS  K  +  
Sbjct: 91  RNPMTGAPLKIPATDYPSFSASSTWKDAVAG 121


>gi|15616918|ref|NP_240131.1| integration host factor beta-subunit [Buchnera aphidicola str.
          APS (Acyrthosiphon pisum)]
 gi|219681672|ref|YP_002468058.1| integration host factor beta-subunit [Buchnera aphidicola str. 5A
          (Acyrthosiphon pisum)]
 gi|219682227|ref|YP_002468611.1| integration host factor beta-subunit [Buchnera aphidicola str.
          Tuc7 (Acyrthosiphon pisum)]
 gi|257471361|ref|ZP_05635360.1| integration host factor subunit beta [Buchnera aphidicola str.
          LSR1 (Acyrthosiphon pisum)]
 gi|11132945|sp|P57394|IHFB_BUCAI RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|254803529|sp|B8D999|IHFB_BUCA5 RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|254803530|sp|B8D7K1|IHFB_BUCAT RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
 gi|25294346|pir||A84966 integration host factor beta-subunit [imported] - Buchnera sp.
          (strain APS)
 gi|10038982|dbj|BAB13017.1| integration host factor beta-subunit [Buchnera aphidicola str.
          APS (Acyrthosiphon pisum)]
 gi|219621960|gb|ACL30116.1| integration host factor beta-subunit [Buchnera aphidicola str.
          Tuc7 (Acyrthosiphon pisum)]
 gi|219624515|gb|ACL30670.1| integration host factor beta-subunit [Buchnera aphidicola str. 5A
          (Acyrthosiphon pisum)]
 gi|311086045|gb|ADP66127.1| integration host factor subunit beta [Buchnera aphidicola str.
          LL01 (Acyrthosiphon pisum)]
 gi|311086618|gb|ADP66699.1| integration host factor subunit beta [Buchnera aphidicola str.
          TLW03 (Acyrthosiphon pisum)]
 gi|311087201|gb|ADP67281.1| integration host factor subunit beta [Buchnera aphidicola str.
          JF99 (Acyrthosiphon pisum)]
 gi|311087726|gb|ADP67805.1| integration host factor subunit beta [Buchnera aphidicola str.
          JF98 (Acyrthosiphon pisum)]
          Length = 94

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L + I++ +  +S K   R    +   +  S   G+ I+I  F +F +  + SR+
Sbjct: 1  MIKSELFERIAEQKINISNKMIERAAKEMLEHMIISLANGKRIEIRGFGSFSLHYRSSRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T + VK++ + V  FK    L+ R  
Sbjct: 61 GRNPKTGKSVKLNEKYVPYFKPGKKLRDRAN 91


>gi|29831670|ref|NP_826304.1| DNA-binding protein HU 1 [Streptomyces avermitilis MA-4680]
 gi|297200046|ref|ZP_06917443.1| integration host factor, beta subunit [Streptomyces sviceus ATCC
          29083]
 gi|29608786|dbj|BAC72839.1| putative DNA-binding protein Hu 1 [Streptomyces avermitilis
          MA-4680]
 gi|197710519|gb|EDY54553.1| integration host factor, beta subunit [Streptomyces sviceus ATCC
          29083]
          Length = 93

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV +++    ++RKD+   +      + +   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAAFAETVGEIVAKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           RN QT   ++I     V   A S LK+ 
Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKEA 89


>gi|171909880|ref|ZP_02925350.1| putative integration host factor alpha-subunit [Verrucomicrobium
          spinosum DSM 4136]
          Length = 104

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 2/94 (2%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS T+T+ DLV  +S   GL++  +        + I +   +G  + +  F TF V+   
Sbjct: 1  MS-TVTKRDLVVELSNRTGLTQSQAFDLFQQALDLITEELAKGNEVTLRRFGTFEVRVTK 59

Query: 61 SRVGRNL-QTNQEVKIDPRRVVVFKASSILKKRI 93
           ++GRN  +   E++I PR VV FK    +K ++
Sbjct: 60 PKIGRNPNKPGSEMQIPPRTVVRFKPGKEMKAQV 93


>gi|186687124|ref|YP_001870267.1| histone family protein DNA-binding protein [Nostoc punctiforme
          PCC 73102]
 gi|186469427|gb|ACC85226.1| histone family protein DNA-binding protein [Nostoc punctiforme
          PCC 73102]
          Length = 91

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +++ +  +++K +   ++   + + ++   GE + +  F +F  +++  R G
Sbjct: 1  MNKGELVDAVAAKTNITKKQADEVISAFLSVVTEAVANGEKVTLIGFGSFERRERAEREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I   +V  F A    K+++ 
Sbjct: 61 RNPKTQETMTIPATKVPAFSAGKQFKEKVA 90


>gi|257469517|ref|ZP_05633609.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
 gi|317063761|ref|ZP_07928246.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689437|gb|EFS26272.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 92

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+ + +    ++    ++ D+ +        I +  V GE I    F  F V  + +R 
Sbjct: 1  MTKKEFIDLYFEKGEFATKIDAEKKAAAFLAVIEEGLVGGEDITFLGFGKFEVADRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN QT +E++++ ++VV FKA   L +++  
Sbjct: 61 CRNPQTGEEMEVEAKKVVKFKAGKGLSEKVNQ 92


>gi|212704733|ref|ZP_03312861.1| hypothetical protein DESPIG_02796 [Desulfovibrio piger ATCC
          29098]
 gi|212671860|gb|EEB32343.1| hypothetical protein DESPIG_02796 [Desulfovibrio piger ATCC
          29098]
          Length = 95

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 50/94 (53%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M KT+T++D+V+ I +    +R D    V  L   +  +  +  A+ IS F  F    K 
Sbjct: 1  MKKTLTKADIVERIYESTDKNRVDVKNVVEKLLEIMKSAIKKDNALLISGFGKFEAYDKA 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          SR GRN QT++ + + PR+VVVF+ S   +  + 
Sbjct: 61 SRKGRNPQTDEAITLPPRKVVVFRLSRKFRAELN 94


>gi|220903465|ref|YP_002478777.1| histone family protein DNA-binding protein [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219867764|gb|ACL48099.1| histone family protein DNA-binding protein [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 95

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 52/94 (55%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M KT+T++D+V++I +E   +R D    V  L   +  +  +  A+ IS F  F    K 
Sbjct: 1  MKKTLTKADIVEAIYEETDKNRVDVKNVVEKLLEIMKTAIKKDRALLISGFGKFECYDKA 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          SR GRN +T++ + + PR+V+VF+ S   +  + 
Sbjct: 61 SRKGRNPKTDETITLPPRKVMVFRLSRKFRSELN 94


>gi|295836876|ref|ZP_06823809.1| DNA-binding protein HU [Streptomyces sp. SPB74]
 gi|302521508|ref|ZP_07273850.1| integration host factor, alpha subunit [Streptomyces sp. SPB78]
 gi|295826251|gb|EFG64756.1| DNA-binding protein HU [Streptomyces sp. SPB74]
 gi|302430403|gb|EFL02219.1| integration host factor, alpha subunit [Streptomyces sp. SPB78]
          Length = 93

 Score =  103 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV +++    ++RKD+   +      + D   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDVVAKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           RN QT + ++I     V   A S LK+ 
Sbjct: 61 ARNPQTGEPIQIAAGYSVKVSAGSKLKEA 89


>gi|15604046|ref|NP_220561.1| DNA-binding protein HU (hupA) [Rickettsia prowazekii str. Madrid E]
 gi|3860737|emb|CAA14638.1| DNA-BINDING PROTEIN HU (hupA) [Rickettsia prowazekii]
 gi|292571765|gb|ADE29680.1| DNA-binding protein HU [Rickettsia prowazekii Rp22]
          Length = 110

 Score =  103 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 3   KTITRSDLVKSISKEFG---------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53
           K + +++ +  +++            L++ D+ + +  +   +  +      + ++ F +
Sbjct: 10  KKMNKTEFIAFMTEHGHNNKHAAHKTLTKADAEKALNLVIESVISAIKSKHNVNLTGFGS 69

Query: 54  FHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           F +  +  R GRN +T  ++KID      F+A   LK+ 
Sbjct: 70  FEIHHRKEREGRNPKTGAKMKIDAYNQPTFRAGRKLKEA 108


>gi|258513051|ref|YP_003189308.1| histone-like DNA-binding protein HU [Acetobacter pasteurianus IFO
          3283-01]
 gi|329113763|ref|ZP_08242536.1| DNA-binding protein HU [Acetobacter pomorum DM001]
 gi|256634954|dbj|BAI00929.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-01]
 gi|256638009|dbj|BAI03977.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-03]
 gi|256641063|dbj|BAI07024.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-07]
 gi|256644118|dbj|BAI10072.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-22]
 gi|256647173|dbj|BAI13120.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-26]
 gi|256650226|dbj|BAI16166.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-32]
 gi|256653217|dbj|BAI19150.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-01-42C]
 gi|256656270|dbj|BAI22196.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-12]
 gi|326696919|gb|EGE48587.1| DNA-binding protein HU [Acetobacter pomorum DM001]
          Length = 92

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   DL++ I     + +KD+   + T+F  I ++AV+G+   I+ F  F V+Q   R G
Sbjct: 1  MNSQDLIERIVAATDIQKKDAKTALETVFAAITEAAVKGDDTTIAGFGKFVVRQTAERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QT  E+ I   R + +  +  +K  +
Sbjct: 61 RNPQTGAELVIPASRKLAYTPAKAVKDAL 89


>gi|71909124|ref|YP_286711.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB]
 gi|71848745|gb|AAZ48241.1| Histone-like bacterial DNA-binding protein [Dechloromonas
          aromatica RCB]
          Length = 99

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV+  +KE G+++  + + ++ +   +  +  +GE++ +  F TF   ++ +R G
Sbjct: 1  MNKSELVEVAAKEAGITKAAADKALSAIIGAVVATVTKGESVTLVGFGTFKSAKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +N +T   +KI    V  F A +  K  +
Sbjct: 61 KNPKTGATLKIPATTVPKFTAGTAFKASV 89


>gi|194291893|ref|YP_002007800.1| DNA-binding protein hu-beta, ns1 (hu-1), plays a role in DNA
          replication and in rpo translation [Cupriavidus
          taiwanensis LMG 19424]
 gi|193225797|emb|CAQ71743.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Cupriavidus
          taiwanensis LMG 19424]
          Length = 93

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +I+ E  LS   + R +    + I  +  +G+++ +  F +F   ++ +R G
Sbjct: 1  MNKGELVSAIAAEAELSNAAAERALNAALDSIKKAVAKGDSVTLVGFGSFAAGKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + +KI   + V F A    K  +  
Sbjct: 61 RNPRTGETIKIPAAKTVKFSAGQGFKDAVNK 91


>gi|21223911|ref|NP_629690.1| histone-like DNA binding protein [Streptomyces coelicolor A3(2)]
 gi|256784990|ref|ZP_05523421.1| histone-like DNA binding protein [Streptomyces lividans TK24]
 gi|289768882|ref|ZP_06528260.1| DNA-binding protein HU 2 [Streptomyces lividans TK24]
 gi|61222645|sp|P0A3H7|DBH2_STRCO RecName: Full=DNA-binding protein HU 2
 gi|61222646|sp|P0A3H8|DBH2_STRLI RecName: Full=DNA-binding protein HU 2
 gi|3355704|emb|CAA20004.1| histone-like DNA binding protein [Streptomyces coelicolor A3(2)]
 gi|5926707|dbj|BAA84639.1| histone-like protein [Streptomyces lividans]
 gi|289699081|gb|EFD66510.1| DNA-binding protein HU 2 [Streptomyces lividans TK24]
          Length = 218

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+ +   V  + + +  + V G+ + ++ F +F    + +R  
Sbjct: 1   MNKAQLVEAIADKLG-GRQQAADAVDAVLDALVRAVVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           RN QT + V++    V  F+A    K  +    +  K +     +P GS
Sbjct: 60  RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKKLPKNDIAVKKAPKGS 108


>gi|300726153|ref|ZP_07059610.1| DNA-binding protein HU [Prevotella bryantii B14]
 gi|299776623|gb|EFI73176.1| DNA-binding protein HU [Prevotella bryantii B14]
          Length = 94

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAI-KISSFATFHVKQKGSRV 63
          + +++L+  ++++  L++ +S++ V  +   I D+   G+ +  I  F  F VKQ   R 
Sbjct: 1  MNKTELISKVAEQANLTKAESSKLVNAVLGAIADNLCEGDGLLAIPDFGRFQVKQVPERT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKAS 86
          G N  T +++ I     +VFKAS
Sbjct: 61 GINPSTKEKIVIPAHDKIVFKAS 83


>gi|218282473|ref|ZP_03488732.1| hypothetical protein EUBIFOR_01314 [Eubacterium biforme DSM 3989]
 gi|218216569|gb|EEC90107.1| hypothetical protein EUBIFOR_01314 [Eubacterium biforme DSM 3989]
          Length = 95

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 49/95 (51%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M K + +  L +++S +  +S+KD+   V  +FNE+ D+      + I++F  F +  + 
Sbjct: 1  MGKYVNKESLTQTLSIQLNMSKKDAAYAVDLIFNEMSDALASDGHVDITAFGKFEIFDRK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR+G N  T + + I   ++  F+ S  LK +   
Sbjct: 61 SRMGINPVTKERMMIQATKLPKFRPSQTLKNKCNK 95


>gi|154507606|ref|ZP_02043248.1| hypothetical protein ACTODO_00086 [Actinomyces odontolyticus ATCC
          17982]
 gi|293189276|ref|ZP_06607999.1| DNA-binding protein HU [Actinomyces odontolyticus F0309]
 gi|153797240|gb|EDN79660.1| hypothetical protein ACTODO_00086 [Actinomyces odontolyticus ATCC
          17982]
 gi|292821739|gb|EFF80675.1| DNA-binding protein HU [Actinomyces odontolyticus F0309]
          Length = 93

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 48/92 (52%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R++LV  I++   L++  +   +      + +S  +GEA+K++   +    ++ +R 
Sbjct: 2  SVNRTELVAQIAERADLTKAKADEALAAFQAVLVESLAKGEAVKVTGLLSVERVERAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +E+KI     V   A S LKK +  
Sbjct: 62 GRNPRTGEEIKIPAGYGVKLSAGSTLKKAVSK 93


>gi|257451958|ref|ZP_05617257.1| histone-like DNA-binding protein [Fusobacterium sp. 3_1_5R]
 gi|257467237|ref|ZP_05631548.1| histone-like DNA-binding protein [Fusobacterium gonidiaformans
          ATCC 25563]
 gi|315918366|ref|ZP_07914606.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563]
 gi|317058507|ref|ZP_07922992.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
 gi|313684183|gb|EFS21018.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
 gi|313692241|gb|EFS29076.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563]
          Length = 93

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 50/90 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V +++K+  ++ K++ + V      + +S V G  +K   F ++  K++ +R  
Sbjct: 1  MTKKEFVAALAKKAEVTGKEADKMVKCFLELVEESLVAGNDVKFIGFGSWETKKREARKL 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT +E+KI  +RVV FK    L  ++ 
Sbjct: 61 RNPQTGKEMKIAAKRVVKFKVGKALADKVA 90


>gi|124515197|gb|EAY56708.1| putative histone-like DNA-binding protein [Leptospirillum
          rubarum]
 gi|206603673|gb|EDZ40153.1| Putative histone-like DNA-binding protein [Leptospirillum sp.
          Group II '5-way CG']
          Length = 102

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 4  TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T+T+S+L+ ++  + G L++K  +  V  +F+ I D   +G A+ I  F  FH  ++ +R
Sbjct: 8  TLTKSELIDTLHAKNGTLTKKAVSEVVDQVFSTITDHVAKGTAVNIVGFGKFHAVKRAAR 67

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN  T   +KI       F A    K  + 
Sbjct: 68 TGRNPATGAVIKIAATTTPRFAAGKAFKDSVA 99


>gi|315606150|ref|ZP_07881178.1| DNA-binding protein HU [Actinomyces sp. oral taxon 180 str.
          F0310]
 gi|315312108|gb|EFU60197.1| DNA-binding protein HU [Actinomyces sp. oral taxon 180 str.
          F0310]
          Length = 93

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 48/92 (52%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R++LV  I++   L++  +   +      + +S  +GEA+K++   +    ++ +R 
Sbjct: 2  SVNRTELVAQIAERADLTKAKADEALAAFQAVLVESLAKGEAVKVTGLLSVERVERAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +E+KI     V   A S LKK +  
Sbjct: 62 GRNPRTGEEIKIPAGYGVKLSAGSTLKKAVAK 93


>gi|269977423|ref|ZP_06184395.1| DNA-binding protein HB1 [Mobiluncus mulieris 28-1]
 gi|307700288|ref|ZP_07637328.1| DNA-binding protein HB1 [Mobiluncus mulieris FB024-16]
 gi|269934339|gb|EEZ90901.1| DNA-binding protein HB1 [Mobiluncus mulieris 28-1]
 gi|307614499|gb|EFN93728.1| DNA-binding protein HB1 [Mobiluncus mulieris FB024-16]
          Length = 91

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R++LV  I+K   LS+ ++   ++   + + +S  +GE +K++         + +R G
Sbjct: 1  MNRTELVAEIAKRAALSKTEADAALSAFQDILIESLKKGETVKVTGLMNVERVSRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T +E+KI     V   A S LKK +
Sbjct: 61 RNPRTGEEIKIPAGFGVKISAGSTLKKAV 89


>gi|320353542|ref|YP_004194881.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
 gi|320122044|gb|ADW17590.1| histone family protein DNA-binding protein [Desulfobulbus
          propionicus DSM 2032]
          Length = 96

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 57/93 (61%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K +TR +L  S++++ G+S++++   V T+F  +  + V GE+IK+  F T  V+ K  R
Sbjct: 4  KNVTRKELAISVNEKLGVSQRNAAEIVDTVFAIMKTTMVAGESIKLVQFGTLTVRDKSPR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           GRN +T + + I  R++V F+ S  L++R+  
Sbjct: 64 RGRNPRTGESMTITKRQMVSFRPSKRLRERLNK 96


>gi|153878657|ref|ZP_02004647.1| Integration host factor beta-subunit [Beggiatoa sp. PS]
 gi|152064879|gb|EDN65353.1| Integration host factor beta-subunit [Beggiatoa sp. PS]
          Length = 73

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%)

Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88
          + T+  ++  S   GE I+I  F +F +  +  R GRN +T + V +  + V  FK    
Sbjct: 1  MKTILEQMAQSLENGERIEIRGFGSFSLHYRPPRKGRNPKTGEPVDLPEKFVPHFKPGKE 60

Query: 89 LKKRIM 94
          L+ R+ 
Sbjct: 61 LRDRVN 66


>gi|154247521|ref|YP_001418479.1| histone family protein DNA-binding protein [Xanthobacter
          autotrophicus Py2]
 gi|154161606|gb|ABS68822.1| histone family protein DNA-binding protein [Xanthobacter
          autotrophicus Py2]
          Length = 92

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+++L+ ++++E  L++  +   V   F+ I  +   GE +K+  F +F V  + +R GR
Sbjct: 3  TKNELIAAVAEEAKLTKTAAAAAVDATFDIIAKALQEGEEVKLIGFGSFSVVTRAAREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N +T + VKI   +   F     LK+ +  
Sbjct: 63 NPRTGKPVKIKASKAPKFTPGKGLKEAVNG 92


>gi|290957139|ref|YP_003488321.1| histone-like DNA binding protein [Streptomyces scabiei 87.22]
 gi|260646665|emb|CBG69762.1| putative histone-like DNA binding protein [Streptomyces scabiei
          87.22]
          Length = 217

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1  MNKAQLVEAIADKVG-GRQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN QT + V++    V  F+A    K  +    +
Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93


>gi|27380036|ref|NP_771565.1| DNA-binding protein HU [Bradyrhizobium japonicum USDA 110]
 gi|27353190|dbj|BAC50190.1| hup [Bradyrhizobium japonicum USDA 110]
          Length = 99

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT   L   I++   LS+K +   +T +   I     +G+ ++I       V+++ +R 
Sbjct: 10 TITLKHLAADIAESQDLSKKHAEAVLTDMVELIAKHLKKGDRVRIVGLGILQVRKRAART 69

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN  T + + I   + V F+    LK+ I
Sbjct: 70 GRNPATGEPIHIKASKKVAFRPVKELKEAI 99


>gi|225850916|ref|YP_002731150.1| histone family protein DNA-binding protein [Persephonella marina
          EX-H1]
 gi|225645576|gb|ACO03762.1| histone family protein DNA-binding protein [Persephonella marina
          EX-H1]
          Length = 96

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 5/96 (5%)

Query: 5  ITRSDLVKSI--SKEFGLSRKDSTRFVTTLFNEICDSAVRGE---AIKISSFATFHVKQK 59
          +T++++V+ I  +K   +S+KD +  V  +F +I    V GE    ++IS F TF VK++
Sbjct: 1  MTKAEIVEWILKNKNPEVSKKDVSDVVNAIFEKIIQELVTGEDGHKVQISGFGTFIVKKR 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            ++GRN +T +E  I  R  + FKA   LK+ +  
Sbjct: 61 APKIGRNPKTKEEKLIPERFGISFKAGKHLKESLSK 96


>gi|330994478|ref|ZP_08318403.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1]
 gi|329758478|gb|EGG74997.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1]
          Length = 536

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 38/80 (47%)

Query: 17  EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKID 76
           E  LS  D+ + +  +   +  +A+RGE + + +F  F VK   +R GRN  T   ++I 
Sbjct: 456 EADLSNADTRKVIDAVVEAMTQAAIRGEEVTLPNFGKFKVKDVPAREGRNPATGATIQIA 515

Query: 77  PRRVVVFKASSILKKRIMDD 96
             R + F  +  LK  +   
Sbjct: 516 ASRKLGFTPAKALKDALNGG 535


>gi|115524524|ref|YP_781435.1| histone family protein DNA-binding protein [Rhodopseudomonas
           palustris BisA53]
 gi|115518471|gb|ABJ06455.1| histone family protein DNA-binding protein [Rhodopseudomonas
           palustris BisA53]
          Length = 103

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           IT   L  +++++  +S+K S   ++ L   I     +GE I+I       V+++ +R G
Sbjct: 15  ITLKHLAAALAEDHEMSKKKSEEILSDLVGAITKHLKKGERIRIVGLGILQVRKRAARTG 74

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN  T + ++I   + V F+A+  LK+ +
Sbjct: 75  RNPATGEPIQIKASKKVAFRAAKELKEAV 103


>gi|218778638|ref|YP_002429956.1| histone family protein DNA-binding protein [Desulfatibacillum
          alkenivorans AK-01]
 gi|218760022|gb|ACL02488.1| histone family protein DNA-binding protein [Desulfatibacillum
          alkenivorans AK-01]
          Length = 90

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRV 63
          +T+ +L++ ++K+  +++  +   + +    +  +  + +  + +  F TF   ++ +R 
Sbjct: 1  MTKPELIEKMAKDAKITKAQAAAALKSFTEGVKMALKKKDGKLTLVGFGTFSKVRRKARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QT + +KI     V FK    LK+ I
Sbjct: 61 GRNPQTGEPIKIKASNAVKFKPGKALKESI 90


>gi|253584037|ref|ZP_04861235.1| DNA-binding protein HU [Fusobacterium varium ATCC 27725]
 gi|251834609|gb|EES63172.1| DNA-binding protein HU [Fusobacterium varium ATCC 27725]
          Length = 91

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+ D  K++ ++   +S+ +S R V  +  EI +    GE +    +  F V QK  R+
Sbjct: 1  MTKKDFAKALFEKGIFVSKAESERKVEAILTEIEEVLKSGEELNFIGWGKFEVVQKAERM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+KI+ ++ V FKA   L  +I 
Sbjct: 61 GRNPKTGEEIKIEAKKSVKFKAGKTLVDKIN 91


>gi|152966755|ref|YP_001362539.1| histone family protein DNA-binding protein [Kineococcus
           radiotolerans SRS30216]
 gi|151361272|gb|ABS04275.1| histone family protein DNA-binding protein [Kineococcus
           radiotolerans SRS30216]
          Length = 187

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 1/109 (0%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++++V ++    G  RK++T  V  +   I  +  +G+ I IS F TF  + + +R G
Sbjct: 1   MNKTEMVDALETRLG-GRKEATAAVEAVIELIQLTVAKGDKIAISGFGTFEKQARNARTG 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           RN +T + VKI    V  F+  +  K+ + D    R    +     +G+
Sbjct: 60  RNPRTGEAVKIKKTSVPRFRPGTAFKEIVSDTKALRAYQGELKAKTTGT 108


>gi|295394908|ref|ZP_06805121.1| DNA-binding protein HU [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972241|gb|EFG48103.1| DNA-binding protein HU [Brevibacterium mcbrellneri ATCC 49030]
          Length = 94

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K   RS+LV  ++++ GL++K  +  +  +F+   D   +GE + +  + +    ++ 
Sbjct: 1  MAK--NRSELVAEVAEKTGLTQKQVSDVLDGVFDSFADVVSKGEKLTVPGWLSVERTERA 58

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          +R GRN QT +E++I     V   A S LK  
Sbjct: 59 ARKGRNPQTGEEIQIAAGYSVKLSAGSKLKAA 90


>gi|14195649|sp|Q9ZDZ2|DBH_RICPR RecName: Full=DNA-binding protein HU
          Length = 99

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 43/97 (44%), Gaps = 9/97 (9%)

Query: 5  ITRSDLVKSISKEFG---------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55
          + +++ +  +++            L++ D+ + +  +   +  +      + ++ F +F 
Sbjct: 1  MNKTEFIAFMTEHGHNNKHAAHKTLTKADAEKALNLVIESVISAIKSKHNVNLTGFGSFE 60

Query: 56 VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          +  +  R GRN +T  ++KID      F+A   LK+ 
Sbjct: 61 IHHRKEREGRNPKTGAKMKIDAYNQPTFRAGRKLKEA 97


>gi|282860074|ref|ZP_06269155.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010]
 gi|282587162|gb|EFB92386.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010]
          Length = 92

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63
          +T++D++  I+ E G+S+KD +  V +  + I DS + + E + +  F +F VK +  + 
Sbjct: 1  MTKADIINEIATETGISKKDVSAVVESFMDAIKDSLLDKKENVYLRGFGSFIVKHRAEKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN+  N  + I       FK +    +
Sbjct: 61 ARNISKNTTITIPAHDFPSFKPAKTFIE 88


>gi|254420538|ref|ZP_05034262.1| DNA-binding protein HU [Brevundimonas sp. BAL3]
 gi|196186715|gb|EDX81691.1| DNA-binding protein HU [Brevundimonas sp. BAL3]
          Length = 92

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+++L+ +++K+ G+S+ D+ + +T +   I  S   G  ++IS+   F    +  R GR
Sbjct: 3  TQAELIAAVAKDAGVSQADAGKVLTAIVENIHASLKAGGDVRISNLGVFDTAARAEREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N  T   +KI   + V F+ S  LK  +  
Sbjct: 63 NPATGATIKIAASKAVRFRVSKPLKDAVNG 92


>gi|281357086|ref|ZP_06243576.1| histone family protein DNA-binding protein [Victivallis vadensis
          ATCC BAA-548]
 gi|281316644|gb|EFB00668.1| histone family protein DNA-binding protein [Victivallis vadensis
          ATCC BAA-548]
          Length = 99

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ DLV  I++E G  + D    V    + I    + G  I++ +F  F +K + SR G
Sbjct: 1  MTKRDLVVKIARETGFIQNDVAEVVQKTLDYIAQDLIEGHTIELRNFGVFEIKVRKSRKG 60

Query: 65 RNL-QTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  Q   EV I  R VV F+A   LK+ +  
Sbjct: 61 RNPNQPKNEVIIPERAVVKFRAGKELKEAVEQ 92


>gi|34540963|ref|NP_905442.1| DNA-binding protein HU [Porphyromonas gingivalis W83]
 gi|188995257|ref|YP_001929509.1| putative DNA-binding protein HU [Porphyromonas gingivalis ATCC
          33277]
 gi|34397278|gb|AAQ66341.1| DNA-binding protein HU [Porphyromonas gingivalis W83]
 gi|188594937|dbj|BAG33912.1| putative DNA-binding protein HU [Porphyromonas gingivalis ATCC
          33277]
          Length = 92

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 49/92 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V +I+K  G+ ++ + + V +  + I DS   G+ + +  F +F VK++  +  
Sbjct: 1  MTKADVVNAIAKSTGIDKETTLKVVESFMDTIKDSLSEGDNVYLRGFGSFIVKERAEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN+     + I  R +  FK S I   ++  D
Sbjct: 61 RNISKQTTIIIPKRNIPAFKPSKIFMSQMKQD 92


>gi|152990572|ref|YP_001356294.1| DNA-binding protein HU [Nitratiruptor sp. SB155-2]
 gi|151422433|dbj|BAF69937.1| DNA-binding protein HU [Nitratiruptor sp. SB155-2]
          Length = 91

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ V+ ++++ GLS+KD+ + +      I D+   G+ +    F TF   Q+ +R  
Sbjct: 1  MKKAEFVQIVAEKAGLSKKDTQKVIDAALEVITDALKNGDEVAFIGFGTFTTAQRAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +   T++ VK+   RVV FK    LK+ +  
Sbjct: 61 KVPGTDRVVKVPATRVVKFKVGKKLKEAVAG 91


>gi|329960404|ref|ZP_08298814.1| putative DNA-binding protein HU [Bacteroides fluxus YIT 12057]
 gi|328532764|gb|EGF59549.1| putative DNA-binding protein HU [Bacteroides fluxus YIT 12057]
          Length = 93

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 45/92 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DLV+ ISK+ G+ R +    V      +  S   G+ + +  F +F VK++  + G
Sbjct: 1  MTKADLVQEISKQTGIDRDEVLMIVEAFMETVKCSLSMGKEVYLRGFGSFIVKRRAEKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN+  N  + I    +  FK S     +I  +
Sbjct: 61 RNIGQNTTLIIPAHDIPAFKPSKEFSNKIKKE 92


>gi|118580311|ref|YP_901561.1| histone family protein DNA-binding protein [Pelobacter propionicus
           DSM 2379]
 gi|118503021|gb|ABK99503.1| histone family protein DNA-binding protein [Pelobacter propionicus
           DSM 2379]
          Length = 126

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 43/105 (40%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++LV  I++   L++  + + +         +   G+ + I  F  F    + +R G
Sbjct: 1   MNKTELVAKIAEGAELTKVQAEKVLDIFIASTTAALKAGDKVAIIGFGAFSAVTRKARTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
           RN QT + ++I  +    F     LK      ++ +      + S
Sbjct: 61  RNPQTGKALQIAEKTNGKFTPGKALKDLTAKPVKSKSAKPTKLES 105


>gi|198276416|ref|ZP_03208947.1| hypothetical protein BACPLE_02611 [Bacteroides plebeius DSM
          17135]
 gi|313146782|ref|ZP_07808975.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
 gi|198270858|gb|EDY95128.1| hypothetical protein BACPLE_02611 [Bacteroides plebeius DSM
          17135]
 gi|313135549|gb|EFR52909.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
          Length = 93

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 44/92 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D++  I++E G+ +  +T  V      + +S + G  + +  F +F +KQ+  +  
Sbjct: 1  MTKADIIARIAQETGIEKSVATTVVEAFMESVRESMIAGNEVFLRGFGSFIIKQRAEKKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN+  N  + I    V  FK +      + + 
Sbjct: 61 RNISKNTTIVIPAHSVPAFKPAKTFLDAVKEG 92


>gi|114777026|ref|ZP_01452046.1| histone-like protein [Mariprofundus ferrooxydans PV-1]
 gi|114552547|gb|EAU55007.1| histone-like protein [Mariprofundus ferrooxydans PV-1]
          Length = 90

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++    LS+  +   V  + + I  +   G+A+ +  F TF V ++ +R  
Sbjct: 1  MNKAELINHVAAAADLSKAAAGEAVEAVLSGITGTLANGDAVSLVGFGTFSVAERAARTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + +++   +   FKA   LK  + 
Sbjct: 61 RNPRTGEAIEVGASKAPKFKAGKALKDAVK 90


>gi|328953678|ref|YP_004371012.1| histone family protein DNA-binding protein [Desulfobacca
          acetoxidans DSM 11109]
 gi|328454002|gb|AEB09831.1| histone family protein DNA-binding protein [Desulfobacca
          acetoxidans DSM 11109]
          Length = 95

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 55/92 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  ++ +I+ + GLS++++   V  + + I ++  + E + IS F  F V+ K  R 
Sbjct: 2  ALTKEKVINAINLKLGLSKQEARSAVERVLHLIKEALAQEEDVLISGFGKFTVRSKNPRR 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN QT +++ +  R+VVVFK S +L+ RI  
Sbjct: 62 GRNPQTKEDLILRARKVVVFKTSGVLRHRINQ 93


>gi|251772900|gb|EES53459.1| putative integration host factor, beta-subunit [Leptospirillum
          ferrodiazotrophum]
          Length = 91

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L+  ++++F G+ R+D+   +      + +    G+ +++  F    ++ +  R 
Sbjct: 1  MTKSELIIRLARQFPGIRREDAREMLDLFLEAMKEGLRSGDTVELRDFGVLRIRSRSQRK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN +T ++V ++ R+VV FK S  LK R++
Sbjct: 61 ARNPKTGEKVTVEARKVVYFKQSRTLKGRLL 91


>gi|167646806|ref|YP_001684469.1| histone family protein DNA-binding protein [Caulobacter sp. K31]
 gi|167349236|gb|ABZ71971.1| histone family protein DNA-binding protein [Caulobacter sp. K31]
          Length = 92

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 42/90 (46%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+++LV +I+++ G+++  +   +    + +  S   GE +++  F TF    + +   R
Sbjct: 3  TKAELVTAIAEKAGINKNQAKDALEAFIDAVTTSLKAGEDVRLVGFGTFKAVARAAGTAR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N +T + V     +   F+    LK  +  
Sbjct: 63 NPRTGETVNRPASKTARFQVGEGLKTTLNG 92


>gi|297191835|ref|ZP_06909233.1| DNA-binding protein HU 2 [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197722028|gb|EDY65936.1| DNA-binding protein HU 2 [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 216

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 1/100 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1   MNKAQLVEAIADKLG-GRQQAADAVDAVLDAIVRATVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           RN QT + V++    V  F+A    K  +    +  K  +
Sbjct: 60  RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKKLPKGGE 99


>gi|162148654|ref|YP_001603115.1| DNA-binding protein HU [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787231|emb|CAP56824.1| putative DNA-binding protein HU [Gluconacetobacter diazotrophicus
          PAl 5]
          Length = 91

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 39/88 (44%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          ++LV  I+    LS+ D+ + V  L   + D+A  G+ + I     F  K   +R GRN 
Sbjct: 4  TELVDHIASAADLSKADARKAVDALVAAVTDAAKAGDEVTIPDLGKFKTKDVPAREGRNP 63

Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95
           T   + I   R + F  +  LK  +  
Sbjct: 64 ATGATITIAASRKLTFTPAKALKDSLNG 91


>gi|229073027|ref|ZP_04206221.1| DNA-binding protein HU 1 [Bacillus cereus F65185]
 gi|228710145|gb|EEL62125.1| DNA-binding protein HU 1 [Bacillus cereus F65185]
          Length = 93

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 52/92 (56%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + I +++L K ++++  L +KD      T+ + I ++   GE ++I  F TF V+++ +R
Sbjct: 2  QKINKTELTKVVAEKTELIQKDPVAATQTVLDTITNALANGEKVQILGFGTFEVREQSAR 61

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           G N QT +E++I   +   FKA   LK+ + 
Sbjct: 62 TGHNPQTGEEMQIAASKASAFKAGKELKEAVK 93


>gi|71066048|ref|YP_264775.1| putative histone-like DNA-binding protein [Psychrobacter arcticus
           273-4]
 gi|93006496|ref|YP_580933.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis K5]
 gi|71039033|gb|AAZ19341.1| putative histone-like bacterial DNA-binding protein [Psychrobacter
           arcticus 273-4]
 gi|92394174|gb|ABE75449.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis K5]
          Length = 82

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 38/82 (46%)

Query: 20  LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
           ++       V  + N +  +      +++  F +F +  + +R+GRN +T + V +  + 
Sbjct: 1   MTDTVVDDAVREILNLMTHTLANDGRVEVRGFGSFCLHHRRARMGRNPKTGESVPVPAKA 60

Query: 80  VVVFKASSILKKRIMDDMRGRK 101
           +  FK    L++ + + + G +
Sbjct: 61  IPHFKPGKALREAVNEKVAGGQ 82


>gi|319794282|ref|YP_004155922.1| histone family protein DNA-binding protein [Variovorax paradoxus
          EPS]
 gi|315596745|gb|ADU37811.1| histone family protein DNA-binding protein [Variovorax paradoxus
          EPS]
          Length = 116

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +LV+ I+    +S+ ++ R + T+ + I  +  +G+ ++I  F TF    + +R G
Sbjct: 1  MNRIELVEKIATTHTVSKAEAARILETVTSAIVAAVKKGDPVQIVGFGTFKQVARAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N Q    +KI  ++V  F   +  K  +
Sbjct: 61 FNPQAGTAIKIAAQKVPKFVPGAAFKAAV 89


>gi|257469647|ref|ZP_05633739.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
 gi|317063883|ref|ZP_07928368.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
 gi|313689559|gb|EFS26394.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
          Length = 91

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+ D  K++ ++   +S+ +S R V  +  EI +    G+ +    +  F V QK  R+
Sbjct: 1  MTKKDFAKALFEKGIFVSKAESERKVDAILTEIEEVLKSGDELNFIGWGKFEVVQKAERM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+KI+ ++ V FKA   L  ++ 
Sbjct: 61 GRNPKTGEEIKIEAKKTVKFKAGKTLTDKMN 91


>gi|320537407|ref|ZP_08037357.1| putative integration host factor subunit alpha [Treponema
          phagedenis F0421]
 gi|320145733|gb|EFW37399.1| putative integration host factor subunit alpha [Treponema
          phagedenis F0421]
          Length = 103

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          TR+ L   I ++FG   + +   V +L  E+  +  RGE I++ +F  F ++ + S +GR
Sbjct: 7  TRASLTDLIYRKFGYDYRITATIVDSLIEEMASALKRGETIELRNFGVFELQHRKSSIGR 66

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N+     VKI  R VV F+    L++ + D
Sbjct: 67 NISAGTAVKIPERYVVAFRPGKNLREAVKD 96


>gi|319941885|ref|ZP_08016206.1| histone family protein DNA-binding protein [Sutterella
          wadsworthensis 3_1_45B]
 gi|319804538|gb|EFW01408.1| histone family protein DNA-binding protein [Sutterella
          wadsworthensis 3_1_45B]
          Length = 93

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +LV  ++     S+ +  R + +   EI  +   GE++ +  F TF       R G
Sbjct: 1  MNRLELVDRVAARNTASKAEVDRIIVSALEEIISAVRCGESVTLIGFGTFKAVDCAPRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T + ++I   +   F   +  K+ I +
Sbjct: 61 RNPSTGESIRIPGTKKPKFVPGTSFKELINE 91


>gi|294791461|ref|ZP_06756618.1| DNA-binding protein HU [Scardovia inopinata F0304]
 gi|294457932|gb|EFG26286.1| DNA-binding protein HU [Scardovia inopinata F0304]
          Length = 92

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 45/89 (50%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +SDLV  I+++  L++  S   +      + +S   GE ++++   +    ++ +R GR
Sbjct: 4  NKSDLVAKIAQKTSLTKAQSEAAINAFQEVLVESLESGEGLRLTGVLSASRVKRAARTGR 63

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N +T + + I     V  +A S+LKK + 
Sbjct: 64 NPRTGEAINIPAGYGVKLQAGSLLKKAVA 92


>gi|90423898|ref|YP_532268.1| histone-like DNA-binding protein [Rhodopseudomonas palustris
           BisB18]
 gi|90105912|gb|ABD87949.1| histone-like DNA-binding protein [Rhodopseudomonas palustris
           BisB18]
          Length = 104

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 45/84 (53%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L  ++++E  LS+K +   +  L   I     +GE I+I       V+++ +R+GRN  T
Sbjct: 21  LAAALAEEHELSKKQTETILGDLVGRITKHLKKGERIRIVGLGILQVRKRAARMGRNPAT 80

Query: 70  NQEVKIDPRRVVVFKASSILKKRI 93
            + ++I   + V F+A+  LK+ +
Sbjct: 81  GEAIQIKASKKVAFRAAKELKEAV 104


>gi|258406356|ref|YP_003199098.1| histone family protein DNA-binding protein [Desulfohalobium
          retbaense DSM 5692]
 gi|257798583|gb|ACV69520.1| histone family protein DNA-binding protein [Desulfohalobium
          retbaense DSM 5692]
          Length = 98

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 48/93 (51%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           KT+T++D+V +I ++   SR +    V  + + + DS  +  A+ IS F  F    K  
Sbjct: 3  GKTLTKADIVDAIYEQGQRSRAEVKNIVEDMLDIMRDSIKKDYALLISGFGKFEAYDKEP 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          R GRN QT + + +  R VVVF+ S   +  + 
Sbjct: 63 RKGRNPQTEEAITLPGRTVVVFRLSRRFRAELN 95


>gi|262203103|ref|YP_003274311.1| histone family protein DNA-binding protein [Gordonia bronchialis
          DSM 43247]
 gi|262086450|gb|ACY22418.1| histone family protein DNA-binding protein [Gordonia bronchialis
          DSM 43247]
          Length = 193

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 48/94 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++K+    RK +T  V  + + I  +  +GE++ I+ F  F  +++  RV 
Sbjct: 1  MNKAELIDELTKKLDADRKTATEAVELIVDTIVRAVNKGESVTITGFGVFEKRRRAPRVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+    V  F+  +  K  +    +
Sbjct: 61 RNPRTGETVKVRATSVPAFRPGAQFKAVVAGKQK 94


>gi|56416375|ref|YP_153449.1| hypothetical protein AM006 [Anaplasma marginale str. St. Maries]
 gi|222474746|ref|YP_002563161.1| presumptive integration host factor alpha-subunit (ihfA)
          [Anaplasma marginale str. Florida]
 gi|254994605|ref|ZP_05276795.1| presumptive integration host factor alpha-subunit (ihfA)
          [Anaplasma marginale str. Mississippi]
 gi|255002715|ref|ZP_05277679.1| presumptive integration host factor alpha-subunit (ihfA)
          [Anaplasma marginale str. Puerto Rico]
 gi|255003844|ref|ZP_05278645.1| presumptive integration host factor alpha-subunit (ihfA)
          [Anaplasma marginale str. Virginia]
 gi|56387607|gb|AAV86194.1| hypothetical protein AM006 [Anaplasma marginale str. St. Maries]
 gi|222418882|gb|ACM48905.1| presumptive integration host factor alpha-subunit (ihfA)
          [Anaplasma marginale str. Florida]
          Length = 98

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 58/96 (60%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++T+TR+ L   I++E G+SR+D+   V  + +E+  S VRG  +KISSF TF V +K 
Sbjct: 1  MAQTLTRARLADEINREIGISREDALVLVGEILDEMVSSLVRGGLLKISSFGTFKVIRKK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R+GRN +T ++  +     V F  S  +K+ I  +
Sbjct: 61 ERIGRNPKTLEQFIVKEHNTVTFCPSVTMKRLINGE 96


>gi|254418548|ref|ZP_05032272.1| DNA-binding protein HU [Brevundimonas sp. BAL3]
 gi|196184725|gb|EDX79701.1| DNA-binding protein HU [Brevundimonas sp. BAL3]
          Length = 91

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 41/91 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L+  ++    +SR  +   +    + + ++  +G  +K+  F +F    + + V 
Sbjct: 1  MTKAELIGRMATAANISRDQAKTALEAFTDGVVEALTQGRDVKLIGFGSFTPVDRKAGVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT Q V     R   F+    LK  +  
Sbjct: 61 RNPQTGQAVARPASRTARFRPGEGLKSALNG 91


>gi|75676083|ref|YP_318504.1| histone-like DNA-binding protein [Nitrobacter winogradskyi
          Nb-255]
 gi|74420953|gb|ABA05152.1| Histone-like DNA-binding protein [Nitrobacter winogradskyi
          Nb-255]
          Length = 99

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 49/90 (54%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T   L  +++++  LS+K +   ++ +   I     +G+ I+I       V+++ +R 
Sbjct: 10 TVTLKHLAAALAEDHELSKKAAEAILSDMVTRITKHLKKGDRIRIVGLGILQVRKRAARK 69

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN  T +E++I   + V F+A+  LK+ I
Sbjct: 70 GRNPATGEEIQIKASKKVAFRAAKELKEAI 99


>gi|152965970|ref|YP_001361754.1| histone family protein DNA-binding protein [Kineococcus
          radiotolerans SRS30216]
 gi|151360487|gb|ABS03490.1| histone family protein DNA-binding protein [Kineococcus
          radiotolerans SRS30216]
          Length = 188

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++++V ++    G  RK++T  V  +   I  +  +G+ I IS F TF  + + +R G
Sbjct: 1  MNKTEMVDALETRLG-GRKEATAAVEAVIELIQLTVAKGDKIAISGFGTFEKQARNARTG 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + VKI    V  F+  +  K+ + D
Sbjct: 60 RNPRTGEAVKIKKTSVPRFRPGTAFKEIVSD 90


>gi|297156917|gb|ADI06629.1| putative histone-like DNA binding protein [Streptomyces
          bingchenggensis BCW-1]
          Length = 189

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV++I+ + G  R+ +   V  + + +  + V GE + ++ F +F   ++ +R  
Sbjct: 1  MNKAQLVEAIADKLG-GRQQAAEAVDAVLDAMVRAVVSGERVSVTGFGSFEKVERPARYA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN QT + V++    V  F+A    K  +    +
Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93


>gi|224369803|ref|YP_002603967.1| IhfA [Desulfobacterium autotrophicum HRM2]
 gi|223692520|gb|ACN15803.1| IhfA [Desulfobacterium autotrophicum HRM2]
          Length = 108

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ +   K   +SR  S   +      I ++  +GE + IS F  F V +K +R 
Sbjct: 2  ALTKTEITERFQKALDISRNTSYDIMEDFLEIIKETLEQGEDVMISGFGKFCVNEKKARK 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN  T++E+ +  RRV+ FK S  L+  I    +
Sbjct: 62 GRNPATSEEMILPARRVITFKCSGKLRNLINTSEQ 96


>gi|308178354|ref|YP_003917760.1| DNA-binding protein HU [Arthrobacter arilaitensis Re117]
 gi|308178355|ref|YP_003917761.1| DNA-binding protein HU [Arthrobacter arilaitensis Re117]
 gi|307745817|emb|CBT76789.1| DNA-binding protein HU [Arthrobacter arilaitensis Re117]
 gi|307745818|emb|CBT76790.1| DNA-binding protein HU [Arthrobacter arilaitensis Re117]
          Length = 94

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 40/92 (43%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + RS+LV +++ +   S+      +  +F    D   +GE + I  +       + +R 
Sbjct: 2  AMNRSELVAAVAAKTENSQVAVNGVLDAVFEVFVDQISKGEKVSIPGWLAVERTDRAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN QT + ++I     V   A S LK  +  
Sbjct: 62 GRNPQTGEAIQIPAGHSVKLTAGSKLKAAVAK 93


>gi|282880537|ref|ZP_06289244.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1]
 gi|281305640|gb|EFA97693.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1]
          Length = 90

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I++  G+S+  + + +    + I ++ V+GE +++  F TF V ++ +R G
Sbjct: 1  MNKTELIDRIAEAAGISKIAAKKALDGTTDAIKEALVKGEKVQLIGFGTFSVSERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T +++KI+ ++V  FKA + L   + 
Sbjct: 61 INPSTKEKIKIEAKKVAKFKAGAELADALK 90


>gi|39936018|ref|NP_948294.1| DNA-binding protein HU-alpha [Rhodopseudomonas palustris CGA009]
 gi|192291674|ref|YP_001992279.1| histone family protein DNA-binding protein [Rhodopseudomonas
           palustris TIE-1]
 gi|316933828|ref|YP_004108810.1| histone family protein DNA-binding protein [Rhodopseudomonas
           palustris DX-1]
 gi|39649872|emb|CAE28394.1| possible DNA-binding protein hu-alpha (NS2) (HU-2)
           [Rhodopseudomonas palustris CGA009]
 gi|192285423|gb|ACF01804.1| histone family protein DNA-binding protein [Rhodopseudomonas
           palustris TIE-1]
 gi|315601542|gb|ADU44077.1| histone family protein DNA-binding protein [Rhodopseudomonas
           palustris DX-1]
          Length = 103

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T   L  ++++E  LS+K +   +  +   I     +GE I+I       V+++ +R+
Sbjct: 14  TVTLKHLAAALAEEHELSKKQTEAILGDMVTRITKHLKKGERIRIVGLGILQVRKRAARM 73

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           GRN  T ++++I   + V F+A+  LK+ I
Sbjct: 74  GRNPATGEQIQIKASKKVAFRAAKELKEAI 103


>gi|255690691|ref|ZP_05414366.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565]
 gi|260623721|gb|EEX46592.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565]
          Length = 93

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 44/92 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  ++++ G+ +  +   V      + DS + G  + +  F +F VKQ+  +V 
Sbjct: 1  MTKADIVARVAQQTGVEKAVAMTVVEAFMETVKDSMIAGNDVFLRGFGSFVVKQRAEKVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN+  N  + I    +  FK +      + + 
Sbjct: 61 RNISKNTTIVIPAHSIPAFKPAKTFLDAVKEG 92


>gi|92117746|ref|YP_577475.1| histone-like DNA-binding protein [Nitrobacter hamburgensis X14]
 gi|91800640|gb|ABE63015.1| histone-like DNA-binding protein [Nitrobacter hamburgensis X14]
          Length = 99

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T   L  +++++  LS+K +   ++ +   I     +GE I+I       V+++ +R 
Sbjct: 10 TVTLKHLAAALAEDHELSKKAAEAILSDMVTRITKHLKKGERIRIVGLGILQVRKRAARK 69

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN  T +E++I   + V F+A+  LK+ I
Sbjct: 70 GRNPATGEEIQIKASKKVAFRAAKELKEAI 99


>gi|88801872|ref|ZP_01117400.1| DNA-binding protein HU [Polaribacter irgensii 23-P]
 gi|88782530|gb|EAR13707.1| DNA-binding protein HU [Polaribacter irgensii 23-P]
          Length = 96

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 45/96 (46%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D+V  IS + G+ + D    V     E+  +   G+ + +  F +F +K +  + G
Sbjct: 1   MTKADIVSKISDKSGIEKTDVLATVEAFMTEVKGALENGDNVYLRGFGSFIIKTRAEKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           RN+  N  +KI    +  FK +    + +   +  +
Sbjct: 61  RNISKNTTIKIPSHNIPAFKPAKTFTEGVKSKVAVK 96


>gi|145351643|ref|XP_001420178.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580411|gb|ABO98471.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 115

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 43/91 (47%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ L+  ++KE G ++    R +    + I  +   G+ + +S F TF  KQ+ +R G
Sbjct: 23  LNKTTLIDHVAKETGETKASVGRVLNATLDAISATVRAGDKVALSKFGTFARKQRKARDG 82

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN  T   +KI       F ASS  K  +  
Sbjct: 83  RNPLTGAALKIPAANYPSFSASSTFKDLVKG 113


>gi|186683386|ref|YP_001866582.1| histone family protein DNA-binding protein [Nostoc punctiforme
          PCC 73102]
 gi|186465838|gb|ACC81639.1| histone family protein DNA-binding protein [Nostoc punctiforme
          PCC 73102]
          Length = 91

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV +++ +  +++K +   ++   + + ++   GE + +  F +F  +++  R G
Sbjct: 1  MNKGELVDAVATKTNITKKQADEVISAFLSVVTEAVANGEKVTLIGFGSFERRERAEREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I   R+  F A    K+++ 
Sbjct: 61 RNPKTQETMTIPATRIPAFSAGKQFKEKVA 90


>gi|228469635|ref|ZP_04054615.1| DNA-binding protein HU [Porphyromonas uenonis 60-3]
 gi|228308828|gb|EEK17529.1| DNA-binding protein HU [Porphyromonas uenonis 60-3]
          Length = 90

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 46/85 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++VKSI+   G+ R++  + V    + + ++  +G+ + +  F +F VK++  +  
Sbjct: 1  MTKAEVVKSIADTTGVDRQEVLQVVEAFMDTVKNAMSQGDNVYLRGFGSFVVKERAEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+     + +  R+V  FK S   
Sbjct: 61 RNISKQTTIIVPARKVPTFKPSKAF 85


>gi|308272437|emb|CBX29041.1| DNA-binding protein HU-beta [uncultured Desulfobacterium sp.]
          Length = 90

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63
          +T+++LV +I+ +  +++  +   + +    +  +   +   + +  F TF   ++ +R 
Sbjct: 1  MTKAELVDAIAADAKITKTAAVAALDSFTKNVTKALKSKDGKVTLVGFGTFSKAKRVARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN QT  E+KI  R VV  KA   LK+ +
Sbjct: 61 GRNPQTGAEIKIKARNVVKIKAGKKLKEAV 90


>gi|29829226|ref|NP_823860.1| histone-like DNA-binding protein [Streptomyces avermitilis
          MA-4680]
 gi|29606332|dbj|BAC70395.1| putative histone-like DNA-binding protein [Streptomyces
          avermitilis MA-4680]
          Length = 217

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1  MNKAQLVEAIADKVG-GRQQAADAVDAVLDAIVRAVVGGDRVSVTGFGSFEKVDRPARYA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN QT + V++    V  F+A    K  +    +
Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93


>gi|224170258|ref|XP_002192729.1| PREDICTED: similar to DNA-binding protein hu homolog, partial
          [Taeniopygia guttata]
          Length = 90

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++V  I+K  G+ +      V  L   I DS   GE + +  F +F VK++  +  
Sbjct: 1  MTKAEIVTEIAKTTGIEKASVLAVVEGLMTSIKDSLAHGENVYLRGFGSFIVKERKEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN+  N  + I    +  FK ++  KK + 
Sbjct: 61 RNISKNTTIIIPAHNIPAFKPAAEFKKVVA 90


>gi|225850239|ref|YP_002730473.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Persephonella marina EX-H1]
 gi|225645148|gb|ACO03334.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Persephonella marina EX-H1]
          Length = 95

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +SDL+  + + F  L +KD    +   F  + D+  +G+ ++I    +F VK K SR 
Sbjct: 1  MKKSDLLNYLIERFPYLKKKDLHTILNGTFEAMTDALSKGDKVEIRGLGSFKVKVKKSRK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           RN +T   V++  +RVV FK   +LKK++
Sbjct: 61 ARNPKTGVVVEVPEKRVVHFKMGKVLKKKL 90


>gi|34497618|ref|NP_901833.1| DNA-binding protein HU-beta [Chromobacterium violaceum ATCC
          12472]
 gi|34103474|gb|AAQ59836.1| DNA-binding protein hu-beta [Chromobacterium violaceum ATCC
          12472]
          Length = 90

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 42/88 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ DL+K ++    ++ K +   +  L   + D+   G  + IS    F   Q+ ++ G
Sbjct: 1  MTKQDLIKHLAAHADVTNKQAESVLNALTTAVLDTVRAGGELAISDLGKFGTTQRAAKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN +T + ++I  +R   F  +  LK  
Sbjct: 61 RNPKTGETIQIAAKRAPKFSPAKALKDA 88


>gi|325680359|ref|ZP_08159917.1| DNA-binding protein HU [Ruminococcus albus 8]
 gi|324107952|gb|EGC02210.1| DNA-binding protein HU [Ruminococcus albus 8]
          Length = 110

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + + + V ++S++   L++K  T  V ++ + I ++   G+++    F TF  K + +R 
Sbjct: 1  MNKPEFVNAVSEKNPSLTKKTVTEVVDSVISTIQETVAAGDSVSFVGFGTFSSKVRAARE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
            N  T +++ I+ + V  FKA    K  + + 
Sbjct: 61 SINPTTKEKIHIEEKTVPTFKAGKAFKDAVAEA 93


>gi|332188086|ref|ZP_08389817.1| bacterial DNA-binding family protein [Sphingomonas sp. S17]
 gi|332011934|gb|EGI54008.1| bacterial DNA-binding family protein [Sphingomonas sp. S17]
          Length = 95

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 43/90 (47%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T SDL + +S   GL++ D+ + +  +   I  +   GE + ++ F  F +K    R GR
Sbjct: 5  TTSDLAEQLSNTHGLAKADARKVIDAILANITAAVATGEEVSLNGFGKFKLKDTPERQGR 64

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N  T + + I   R + F  +  ++ R+  
Sbjct: 65 NPSTGEAITIAASRKLTFAPAKAVRDRMNG 94


>gi|126641618|ref|YP_001084602.1| integration host factor beta subunit [Acinetobacter baumannii
          ATCC 17978]
          Length = 90

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 10 LVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          +++ I+ K   L+       V  + +++ ++      I+I  F +F +  +  RVGRN +
Sbjct: 1  MIERIALKNPHLAEPLVEEAVKIMIDQMIEALSSDNRIEIRGFGSFALHHREPRVGRNPK 60

Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          T + V +  + V  FK    L+  + +  +
Sbjct: 61 TGKSVDVAAKAVPHFKPGKALRDAVNESGK 90


>gi|304415444|ref|ZP_07396093.1| integration host factor (IHF) DNA-binding protein alpha subunit
          [Candidatus Regiella insecticola LSR1]
 gi|304282708|gb|EFL91222.1| integration host factor (IHF) DNA-binding protein alpha subunit
          [Candidatus Regiella insecticola LSR1]
          Length = 97

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 52/92 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+ ++ ++++++ G+ +  + + V + F+EIC        +K+S F  F V+ K  R 
Sbjct: 2  ALTKDNIAENLTEKLGIDKPVAKQLVESFFDEICLILKEERELKVSKFGNFVVRDKPQRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + + I  R VV FK+   LKK + +
Sbjct: 62 GRNPKTGEGIPISARSVVTFKSGQRLKKEVEN 93


>gi|224369016|ref|YP_002603180.1| hypothetical protein HRM2_19150 [Desulfobacterium autotrophicum
          HRM2]
 gi|223691733|gb|ACN15016.1| hypothetical protein HRM2_19150 [Desulfobacterium autotrophicum
          HRM2]
          Length = 76

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
          ++R+ +   V   F+ + D+   G+ ++I    +FHVK   S +GRN +T + V I  ++
Sbjct: 1  MTREGAAEVVEIFFDSLIDALANGDRVEIRGLCSFHVKDYKSYIGRNPKTGERVLIPGKK 60

Query: 80 VVVFKASSILKKRI 93
          +  FKA   LK+ +
Sbjct: 61 LPFFKAGKELKEGV 74


>gi|301167343|emb|CBW26925.1| DNA-binding protein HU-beta [Bacteriovorax marinus SJ]
          Length = 92

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 5  ITRSDLVKSISKEFGL---SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + + +L+++I K   L   ++KD+  F+ T  + I  +  +GE + +  F +F   ++ +
Sbjct: 1  MNKKELLETILKNKELNHMTKKDAELFLNTTIDTIKKTVKKGEDVSLIGFGSFSKVRRAA 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          R G N  T +++KI  + +  FK     K 
Sbjct: 61 RAGVNPATGEKIKIKAKNLPKFKPGKAWKD 90


>gi|91201933|emb|CAJ74993.1| strongly similar to DNA binding protein HU [Candidatus Kuenenia
          stuttgartiensis]
          Length = 103

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 43/92 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV+ ++ E  +S+    + V  + N I     +   +++  F TF VK++ +R G
Sbjct: 1  MNKQELVEYVANECSVSKTCGEKAVNAVLNGIKQGVKKSNEVRLIGFGTFSVKERKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN QT   + I   + V F      KK +   
Sbjct: 61 RNPQTGAVINIKASKTVKFSVGQDFKKVVAKG 92


>gi|218666994|ref|YP_002426010.1| integration host factor, alpha subunit, putative
          [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519207|gb|ACK79793.1| integration host factor, alpha subunit, putative
          [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 107

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 49/89 (55%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+ D+   + +  G +   + +FV   F  +  + +    +K+S F  F V+ K SR 
Sbjct: 2  TITKKDVANHLWEVGGWTHPQAEQFVDAFFEHMRAAIITESELKLSGFGRFTVRAKSSRP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T Q  +I  RRVV F AS++L+ +
Sbjct: 62 GRNPKTGQPYEIKARRVVTFSASALLRAK 90


>gi|114562616|ref|YP_750129.1| histone family protein DNA-binding protein [Shewanella
          frigidimarina NCIMB 400]
 gi|114333909|gb|ABI71291.1| histone family protein DNA-binding protein [Shewanella
          frigidimarina NCIMB 400]
          Length = 91

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 42/90 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  L ++++ +  + +  + + +  +   I      GE I I  F TF ++    +VG
Sbjct: 1  MNKKQLAQTMASKMDIPQVQAKQQLEQILAVIHQGLAEGEKIYIPQFGTFELRFYLPKVG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + ++ID      FK S  LK  I 
Sbjct: 61 RNPQTGEAIEIDGFNQPSFKVSPALKALIN 90


>gi|255322354|ref|ZP_05363500.1| DNA-binding protein HU 1 [Campylobacter showae RM3277]
 gi|255300727|gb|EET79998.1| DNA-binding protein HU 1 [Campylobacter showae RM3277]
          Length = 100

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 44/87 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D +++++ + GLS+KDS + V      I +    G++I    F TF   ++ +R  
Sbjct: 1  MKKADFIQAVADKAGLSKKDSLKVVDAALETIEEVLKNGDSISFIGFGTFATAERAARKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          R   T + + +   + V FK    LK+
Sbjct: 61 RVPGTTKVIDVPASKAVKFKVGKKLKE 87


>gi|148240879|ref|YP_001220380.1| histone-like DNA-binding protein [Bradyrhizobium sp. BTAi1]
 gi|146411255|gb|ABQ39708.1| Histone-like DNA-binding protein [Bradyrhizobium sp. BTAi1]
          Length = 130

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 1/97 (1%)

Query: 2   SKTITRS-DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           ++ +T + ++ + I+ E  L++  +   V ++F  I D+AV G    +  F  F VK   
Sbjct: 27  ARPMTTANEIAEKIAAENDLTKAQAKTIVDSVFKAIADAAVSGAETSLPGFGKFKVKDSP 86

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           +R GRN  T   + I   R + F  +  +K  +    
Sbjct: 87  AREGRNPSTGATIAIAASRKLTFTPAKAIKDSLNGGT 123


>gi|288926402|ref|ZP_06420324.1| DNA-binding protein HU [Prevotella buccae D17]
 gi|315608690|ref|ZP_07883668.1| DNA-binding protein HU [Prevotella buccae ATCC 33574]
 gi|288336855|gb|EFC75219.1| DNA-binding protein HU [Prevotella buccae D17]
 gi|315249540|gb|EFU29551.1| DNA-binding protein HU [Prevotella buccae ATCC 33574]
          Length = 92

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 48/92 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++++  ++   GLS+++ T  V      + +  ++ E++ +  F +F +K + ++  
Sbjct: 1  MTKAEIISEVAMATGLSKREVTAVVEAFMESVKNHLLKKESVFLRGFGSFIIKHRAAKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN+  N  + I    +  FK +  L +++  +
Sbjct: 61 RNISKNTTITIAAHDLPSFKPAKSLVEQMRGE 92


>gi|333030022|ref|ZP_08458083.1| histone family protein DNA-binding protein [Bacteroides coprosuis
          DSM 18011]
 gi|332740619|gb|EGJ71101.1| histone family protein DNA-binding protein [Bacteroides coprosuis
          DSM 18011]
          Length = 94

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 45/94 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K+ G+ +  +   +    + + DS V  E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEITKKTGIDKVTALNTIEAFMDVVKDSLVNDENVYLRGFGSFIVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN+  N  + I    +  FK S    + +    +
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPSKTFTEAVKKHNK 94


>gi|256419984|ref|YP_003120637.1| histone family protein DNA-binding protein [Chitinophaga pinensis
          DSM 2588]
 gi|256034892|gb|ACU58436.1| histone family protein DNA-binding protein [Chitinophaga pinensis
          DSM 2588]
          Length = 95

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 49/91 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ +I+++ G+ + D    +  +F E+ ++   GE I I  F +F  K++ +++G
Sbjct: 1  MRKADLINNIAEKTGIPKVDVLVTLEAMFKEVKEALANGEHIYIRGFGSFITKKRAAKIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN++ N  V+I    +  FK S      +  
Sbjct: 61 RNIKKNVAVEIPEHFIPAFKPSKEFVAEVKK 91


>gi|170745590|ref|YP_001776812.1| histone family protein DNA-binding protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170752147|ref|YP_001783293.1| histone family protein DNA-binding protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659244|gb|ACB28296.1| histone family protein DNA-binding protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659274|gb|ACB28325.1| histone family protein DNA-binding protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 108

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 5/108 (4%)

Query: 5   ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + RS+LV  I+ +   L  +D    V T+   +  + VRG+ I++  F TF V+   +R+
Sbjct: 1   MIRSELVARIAAKNPHLYARDVEAIVATILKTMTTALVRGDRIELREFGTFTVRHHRARI 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111
            RN ++   V +  +  V FK S  +++ +    + +  + +   +PS
Sbjct: 61  ARNPRSQAVVTVPAKGRVAFKPSKAMRELL----QAKPLSTEHSPAPS 104


>gi|254245990|ref|ZP_04939311.1| Integration host factor, beta subunit [Burkholderia cenocepacia
           PC184]
 gi|124870766|gb|EAY62482.1| Integration host factor, beta subunit [Burkholderia cenocepacia
           PC184]
          Length = 82

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 29  VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88
           + T+ + + D+  +G  I+I  F +F + ++ +RVGRN ++ ++V++  + V  FK    
Sbjct: 1   MKTMLDAMSDALAKGHRIEIRGFGSFGLNRRPARVGRNPKSGEKVQVPEKFVPHFKPGKE 60

Query: 89  LKKRIMDDMRGRKCNKDDV 107
           L++R+ D   G     DD 
Sbjct: 61  LRERV-DGRAGEPLKADDP 78


>gi|226941099|ref|YP_002796173.1| HupB2 [Laribacter hongkongensis HLHK9]
 gi|226716026|gb|ACO75164.1| HupB2 [Laribacter hongkongensis HLHK9]
          Length = 90

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +L++ +++   + + ++   V  L   I +    G  I ++    F ++++ +R+G
Sbjct: 1  MTKQELIQRLAERANVGKVETLLVVDALEQLIREELAAGGEIPLARTGKFRLREQAARMG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + V I  RR +VF  +  LK  +
Sbjct: 61 RNPKTGESVMIPARRKIVFTPAKALKDAV 89


>gi|260654666|ref|ZP_05860156.1| DNA-binding protein HU [Jonquetella anthropi E3_33 E1]
 gi|260630682|gb|EEX48876.1| DNA-binding protein HU [Jonquetella anthropi E3_33 E1]
          Length = 131

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+++LV+ + +   L R D+   V  +   I  +  +G  +++  F TF V+Q+ +R G
Sbjct: 21  VTKTELVEFVRENAQLKRSDAVAAVNAVVAGISGALSQGSKVQLVGFGTFEVRQRSARTG 80

Query: 65  RNLQ-TNQEVKIDPRRVVVFKASSILKKRI 93
           RN Q   + V I  ++V VFKA  +L+  +
Sbjct: 81  RNPQDPTKTVHIPAKKVPVFKAGKLLRSAV 110


>gi|255530044|ref|YP_003090416.1| histone family protein DNA-binding protein [Pedobacter heparinus
          DSM 2366]
 gi|255343028|gb|ACU02354.1| histone family protein DNA-binding protein [Pedobacter heparinus
          DSM 2366]
          Length = 100

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 48/94 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D++  IS + G+ + D    V   F  I +S + GE + +  F +F VK++  +  
Sbjct: 1  MTKADIISEISTKTGIEKVDVQETVEAFFKVIKNSMIGGENVYVRGFGSFVVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN+  N  + I    V  FK + +   ++ ++ +
Sbjct: 61 RNISKNTAIIIPEHFVPSFKPAKVFVDKVKNNSK 94


>gi|303237141|ref|ZP_07323711.1| DNA-binding protein HU [Prevotella disiens FB035-09AN]
 gi|302482528|gb|EFL45553.1| DNA-binding protein HU [Prevotella disiens FB035-09AN]
          Length = 92

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63
          +T++D++  I+   G+S+KD +  V +    I DS     E + +  F +F VK +  + 
Sbjct: 1  MTKADIINEIASSTGISKKDVSAVVESFMEAIKDSLLKSKENVYLRGFGSFIVKHRAEKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN+  N  + I       FK +    +
Sbjct: 61 ARNISKNTTITIPAHDFPSFKPAKTFIE 88


>gi|309774624|ref|ZP_07669648.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917524|gb|EFP63240.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 3_1_53]
          Length = 88

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 43/88 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++++++ I+ + G+S + +   +      I D   + E I+I+ F TF  +    R  
Sbjct: 1  MNKNEIIREIAYKQGISSEVTKGIIDQFIELIGDKMAQREKIQIAGFGTFEARFVSERSS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN QT +++ I       FK    LK++
Sbjct: 61 RNPQTGEKIIIPGHFSPKFKPGKALKEK 88


>gi|15616751|ref|NP_239963.1| integration host factor alpha-subunit [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681506|ref|YP_002467891.1| integration host factor alpha-subunit [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682062|ref|YP_002468446.1| integration host factor alpha-subunit [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|257471187|ref|ZP_05635186.1| integration host factor subunit alpha [Buchnera aphidicola str.
           LSR1 (Acyrthosiphon pisum)]
 gi|11132925|sp|P57231|IHFA_BUCAI RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|254803511|sp|B8D8T2|IHFA_BUCA5 RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|254803512|sp|B8D736|IHFA_BUCAT RecName: Full=Integration host factor subunit alpha;
           Short=IHF-alpha
 gi|25294341|pir||A84945 integration host factor alpha-subunit [imported] - Buchnera sp.
           (strain APS)
 gi|10038814|dbj|BAB12849.1| integration host factor alpha-subunit [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219621795|gb|ACL29951.1| integration host factor alpha-subunit [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|219624349|gb|ACL30504.1| integration host factor alpha-subunit [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311085875|gb|ADP65957.1| integration host factor subunit alpha [Buchnera aphidicola str.
           LL01 (Acyrthosiphon pisum)]
 gi|311087027|gb|ADP67107.1| integration host factor subunit alpha [Buchnera aphidicola str.
           JF99 (Acyrthosiphon pisum)]
 gi|311087593|gb|ADP67672.1| integration host factor subunit alpha [Buchnera aphidicola str.
           JF98 (Acyrthosiphon pisum)]
          Length = 102

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/99 (35%), Positives = 60/99 (60%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++ + +++ ++  L++K+S  FV   F E+  S  +GEA+K+S F  F +K+K +R G
Sbjct: 3   LTKAAISENLFEKLQLTKKESKEFVEFFFEEVRKSLEKGEAVKLSGFGNFQIKKKKARPG 62

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           RN +T +   I  RRVV FKA   LK +I + +  +  N
Sbjct: 63  RNPRTGEIFLITARRVVTFKAGQKLKNKINNYLIKKNNN 101


>gi|325105835|ref|YP_004275489.1| histone family protein DNA-binding protein [Pedobacter saltans DSM
           12145]
 gi|324974683|gb|ADY53667.1| histone family protein DNA-binding protein [Pedobacter saltans DSM
           12145]
          Length = 101

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 46/98 (46%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+++++  I+ + G+ + D    V   F  + +S + GE + +  F +F VK++  +  
Sbjct: 1   MTKAEIIAEIANKTGIEKVDVQETVEAFFKVVKNSMISGENVYVRGFGSFVVKKRAEKTA 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           RN+  N  + I    V  FK +     ++    +  K 
Sbjct: 61  RNISKNTAIIIPEHFVPSFKPAKAFVDKVKVGNKKAKA 98


>gi|282859928|ref|ZP_06269016.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010]
 gi|282587331|gb|EFB92548.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010]
          Length = 91

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 40/71 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  I+    LS+ DS + +      I ++  +G+ I++  F TF V ++ +R G
Sbjct: 1  MNKSELIDQIAASSDLSKADSKKALDATIKAIKEALAKGDKIQLVGFGTFAVNERPAREG 60

Query: 65 RNLQTNQEVKI 75
           N  T ++++I
Sbjct: 61 INPSTKEKIQI 71


>gi|50955922|ref|YP_063210.1| DNA-binding HU protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50952404|gb|AAT90105.1| DNA-binding HU protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 94

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 41/94 (43%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+  + +++LV +++   G S+      V   F  + D+   G  + I  +      Q  
Sbjct: 1  MADNLNKTELVSAVAAASGQSQATVAAVVDAFFATVADTVKGGGKVTIPGWLAAERTQTA 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +R GRN QT +E+ I     V   A S LK  + 
Sbjct: 61 ARTGRNPQTGEEISIPAGHRVKLTAGSKLKAAVK 94


>gi|261414759|ref|YP_003248442.1| histone family protein DNA-binding protein [Fibrobacter
          succinogenes subsp. succinogenes S85]
 gi|261371215|gb|ACX73960.1| histone family protein DNA-binding protein [Fibrobacter
          succinogenes subsp. succinogenes S85]
 gi|302327271|gb|ADL26472.1| DNA-binding protein HU [Fibrobacter succinogenes subsp.
          succinogenes S85]
          Length = 116

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          IT+ ++V  I+ + G ++  +   V  L + I +  + G  I++  F  F  KQ+  R  
Sbjct: 8  ITKKEIVDEIASQTGFTQVKTKVIVEELIDAISNCVIEGNNIELRGFGRFKNKQRKERRT 67

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + V I  +   VF+ S  L ++I +
Sbjct: 68 RNPKTGELVNIPAKVRPVFEPSKDLIEKINN 98


>gi|309813025|ref|ZP_07706753.1| DNA-binding protein HB1 [Dermacoccus sp. Ellin185]
 gi|308433097|gb|EFP57001.1| DNA-binding protein HB1 [Dermacoccus sp. Ellin185]
          Length = 91

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 46/88 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + RSDL  +I++  G+S KD+T  +  L + I ++  RG+ I++    T    ++ +R G
Sbjct: 1  MNRSDLASTIAQRTGVSVKDATAVLAGLNDVIIEAVGRGDKIQLPGLLTIERVERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN QT  E++I         A S LK  
Sbjct: 61 RNPQTGAEIEIPAGYAAKVTAGSKLKAA 88


>gi|294673496|ref|YP_003574112.1| HU family DNA-binding protein [Prevotella ruminicola 23]
 gi|294473143|gb|ADE82532.1| DNA-binding protein, HU family [Prevotella ruminicola 23]
          Length = 95

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 47/92 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   D +  +++  G S  ++ +FV  +   + D     +++ I +F TF VK+K  R+ 
Sbjct: 1  MNNKDFITELAQRTGYSADETQQFVNCVVEAMGDHFQDDDSVLIPTFGTFEVKKKMERIM 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N  T Q + + P+ V+ FK +   K+R+ + 
Sbjct: 61 VNPSTGQRMLVPPKLVLTFKPNVSWKERVKNG 92


>gi|221128059|ref|XP_002155705.1| PREDICTED: similar to hlpA [Hydra magnipapillata]
 gi|260222710|emb|CBA32540.1| DNA-binding protein HU-alpha [Curvibacter putative symbiont of
          Hydra magnipapillata]
          Length = 94

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 41/82 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+++++ +  LS+  + R +  L   I     + E +++  F TF   ++ +R G
Sbjct: 1  MNKGELIEALAAKSELSKAAAGRTLDALIEIITAKVAKKEDVQLIGFGTFKAAKRAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          +N +T + +KI    V  F   
Sbjct: 61 KNPRTGEALKITATTVPKFTPG 82


>gi|284029180|ref|YP_003379111.1| histone family protein DNA-binding protein [Kribbella flavida DSM
          17836]
 gi|283808473|gb|ADB30312.1| histone family protein DNA-binding protein [Kribbella flavida DSM
          17836]
          Length = 97

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 44/94 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R++LV  ++ + G+ R  + + +  L + + ++  +G+ + ++   +     +  R G
Sbjct: 1  MNRNELVAGVAAKAGIPRNQAEKVLDALGDVVTEAVHKGDKVSLTGLLSIERVLRAPRTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN QT + + I     V     S LK     D+R
Sbjct: 61 RNPQTGEPLSIPAGYSVRLSCGSRLKAAARGDLR 94


>gi|149277324|ref|ZP_01883466.1| DNA-binding protein HU [Pedobacter sp. BAL39]
 gi|149232201|gb|EDM37578.1| DNA-binding protein HU [Pedobacter sp. BAL39]
          Length = 100

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 48/94 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D++  IS + G+ + D    V   F  I +S + GE + +  F +F VK++  +  
Sbjct: 1  MTKADIISEISTKTGIEKVDVQETVEAFFKVIKNSMIGGENVYVRGFGSFVVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN+  N  + I    V  FK + +   ++ ++ +
Sbjct: 61 RNISKNTAIIIPEHFVPSFKPAKVFVDKVKNNSK 94


>gi|227875778|ref|ZP_03993906.1| DNA-binding protein HU [Mobiluncus mulieris ATCC 35243]
 gi|306819051|ref|ZP_07452768.1| DNA-binding protein HU [Mobiluncus mulieris ATCC 35239]
 gi|227843720|gb|EEJ53901.1| DNA-binding protein HU [Mobiluncus mulieris ATCC 35243]
 gi|304648244|gb|EFM45552.1| DNA-binding protein HU [Mobiluncus mulieris ATCC 35239]
          Length = 93

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R++LV  I+K   LS+ ++   ++   + + +S  +GE +K++         + +R 
Sbjct: 2  SVNRTELVAEIAKRAALSKTEADAALSAFQDILIESLKKGETVKVTGLMNVERVSRAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T +E+KI     V   A S LKK +
Sbjct: 62 GRNPRTGEEIKIPAGFGVKISAGSTLKKAV 91


>gi|224025287|ref|ZP_03643653.1| hypothetical protein BACCOPRO_02026 [Bacteroides coprophilus DSM
          18228]
 gi|224018523|gb|EEF76521.1| hypothetical protein BACCOPRO_02026 [Bacteroides coprophilus DSM
          18228]
          Length = 93

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 45/92 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I+ + GL ++   + V    + +  S + GE + +  F +F +K +  +  
Sbjct: 1  MTKADIVREIATQTGLEKQVVLQVVEGFMDSVKSSMINGEEVYLRGFGSFIIKHRAEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN+  N  + +    +  FK S     R+  D
Sbjct: 61 RNISRNTTIIVPAHNIPAFKPSKAFAGRMKSD 92


>gi|317476084|ref|ZP_07935336.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316907722|gb|EFV29424.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 93

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 43/92 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D++  I+++ G+ +  +T  V      + +S + G  + +  F +F +KQK  +  
Sbjct: 1  MTKADIIARIAQDTGIEKSVATTVVEAFMESVRESMIAGNEVFLRGFGSFILKQKAEKKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN   N  + I    V  FK +      + + 
Sbjct: 61 RNFSKNTTIVIPAHHVPAFKPAKTFLDAVKEG 92


>gi|325142000|gb|EGC64435.1| integration host factor subunit alpha [Neisseria meningitidis
          961-5945]
          Length = 72

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 35/65 (53%)

Query: 30 TTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSIL 89
             F EI  +   GE IKIS F  F ++ K  R GRN +T +EV I  RRVV F AS  L
Sbjct: 1  ELFFEEIRSTLASGEEIKISGFGNFQLRDKPQRPGRNPKTGEEVPITARRVVTFHASQKL 60

Query: 90 KKRIM 94
          K  + 
Sbjct: 61 KSMVE 65


>gi|255534852|ref|YP_003095223.1| DNA-binding protein HU-beta [Flavobacteriaceae bacterium 3519-10]
 gi|255341048|gb|ACU07161.1| DNA-binding protein HU-beta [Flavobacteriaceae bacterium 3519-10]
          Length = 96

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 48/95 (50%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63
          + +S+L+ +++ + G+++  +   + +  + +  +   +   + +  F TF V ++ +R 
Sbjct: 1  MNKSELIDAMANDAGITKVAAKAALESFISNVTATLSQKDGKVSLVGFGTFSVAERAARQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          G N  T + +KI  + V  FKA + L   +M   +
Sbjct: 61 GINPATKKPIKIAAKTVAKFKAGADLAGSVMGGKK 95


>gi|60681456|ref|YP_211600.1| putative histone-like DNA-binding protein [Bacteroides fragilis
          NCTC 9343]
 gi|60492890|emb|CAH07665.1| putative histone-like DNA-binding protein [Bacteroides fragilis
          NCTC 9343]
          Length = 91

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 46/86 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+K ++    L+ K+++  V  + N + ++ +R E++ +  F TF +K + +R  
Sbjct: 1  MNKHDLIKKVALRGNLNAKEASAIVEVVMNAMVEAILREESVTLVGFGTFSIKMRKARNV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           N  T + + I  R+VV F     +K
Sbjct: 61 LNPSTGENMVIPARKVVKFTPGYKMK 86


>gi|254374459|ref|ZP_04989941.1| hypothetical protein FTDG_00629 [Francisella novicida GA99-3548]
 gi|151572179|gb|EDN37833.1| hypothetical protein FTDG_00629 [Francisella novicida GA99-3548]
          Length = 66

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%)

Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88
          +      +  +   G+++ +  F TF VK++  R GRN +T + +KI   +V  FKA   
Sbjct: 1  LDATIAAVTKALKNGDSVTLVGFGTFQVKERSPREGRNPKTGETIKIPASKVPSFKAGKG 60

Query: 89 LKKRIM 94
          LK  + 
Sbjct: 61 LKDAVK 66


>gi|71083725|ref|YP_266445.1| DNA-binding protein [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062838|gb|AAZ21841.1| Bacterial DNA-binding protein [Candidatus Pelagibacter ubique
          HTCC1062]
          Length = 102

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 1  MSKT-ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          M +T +T+ DL+ SI  + G S+  S   +      I D+    + +K+S F TF ++ K
Sbjct: 3  MQRTNLTKKDLINSIYMQIGFSKNISENLIDDFLITIVDNLKIEKKLKLSKFGTFSIRAK 62

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           SR+GRN +T ++  I  R VV+FKAS   K  + 
Sbjct: 63 KSRIGRNPKTKEQTTISNRDVVLFKASKEFKDLVN 97


>gi|256820307|ref|YP_003141586.1| histone family protein DNA-binding protein [Capnocytophaga ochracea
           DSM 7271]
 gi|315223334|ref|ZP_07865193.1| integration host factor subunit alpha [Capnocytophaga ochracea
           F0287]
 gi|256581890|gb|ACU93025.1| histone family protein DNA-binding protein [Capnocytophaga ochracea
           DSM 7271]
 gi|314946665|gb|EFS98654.1| integration host factor subunit alpha [Capnocytophaga ochracea
           F0287]
          Length = 104

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 51/100 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++++V  IS + GL + D    V    NE+ ++   G+ + +  F +F +K +  + G
Sbjct: 1   MTKAEIVSKISDKLGLDKNDVQLTVENFMNEVINTLESGQNVYLRGFGSFIIKTRAEKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           RN+  N  +KI    +  FK + +  + +   ++  K +K
Sbjct: 61  RNISKNTTLKIPAHNIPAFKPAKVFVEGVKAKVKVAKTDK 100


>gi|157164945|ref|YP_001466788.1| DNA-binding protein HU 1 (DNA-binding protein II; HB)
          [Campylobacter concisus 13826]
 gi|157101488|gb|EAT97269.2| DNA-binding protein, HU family [Campylobacter concisus 13826]
          Length = 100

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 42/87 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ +++++ + GLS+KD+ + V      I     +G+ I    F TF    + +R  
Sbjct: 1  MKKAEFIQAVADKAGLSKKDTLKVVDATLETIQAVLEKGDTISFIGFGTFGTADRAARKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          R   T + + +   + V FK    LK+
Sbjct: 61 RVPGTKKVIDVPASKAVKFKVGKKLKE 87


>gi|289549079|ref|YP_003474067.1| histone family protein DNA-binding protein [Thermocrinis albus
          DSM 14484]
 gi|289182696|gb|ADC89940.1| histone family protein DNA-binding protein [Thermocrinis albus
          DSM 14484]
          Length = 90

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 54/90 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV +I+K  G+++K++   +      + D+  +GE + I  F  F V+Q+ +R G
Sbjct: 1  MTKAELVSAIAKGAGITKKEADAALKAAVAAVADALKKGERVAIPGFGIFTVRQRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T   + I  R+VVVF+ +  L++ + 
Sbjct: 61 RNPRTGAVINIPARKVVVFRPAKDLREGLK 90


>gi|323358137|ref|YP_004224533.1| bacterial nucleoid DNA-binding protein [Microbacterium testaceum
          StLB037]
 gi|323274508|dbj|BAJ74653.1| bacterial nucleoid DNA-binding protein [Microbacterium testaceum
          StLB037]
          Length = 95

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 48/92 (52%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K+IT+++LV SI+   G S+   +  + +LF+ + ++  +G  + I  +  F      +R
Sbjct: 4  KSITKTELVASIASATGQSQSAVSGVLDSLFSTVSEAVAKGSKVSIPGWIAFEQVATSAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT +E+ I   + V   A S LK  + 
Sbjct: 64 TGRNPQTGEEISIPAGKRVKVTAGSKLKAAVK 95


>gi|237737338|ref|ZP_04567819.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817]
 gi|229421200|gb|EEO36247.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817]
          Length = 90

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + ++  +++  L++K++ + +      + +S V+G+ +    +  + V ++ +R  
Sbjct: 1  MTKKEFIELYAEKGNLTKKEAEKNINLFLESVEESLVKGDEVTFVGWGKWEVVERAAREV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          R+ Q+ + +K+  ++ V FK   +L  +I 
Sbjct: 61 RSPQSKEIIKVPAKKAVKFKVGKLLADKIK 90


>gi|126727233|ref|ZP_01743069.1| histone-like DNA-binding protein [Rhodobacterales bacterium
          HTCC2150]
 gi|126703442|gb|EBA02539.1| histone-like DNA-binding protein [Rhodobacterales bacterium
          HTCC2150]
          Length = 94

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 45/94 (47%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSK +T++ LV + +   GL +K +   +  L   I      G A+ +     F+ +++ 
Sbjct: 1  MSKPMTKTQLVAAYADASGLDKKTAGAALEALVGLITKEVSGGGAVTLPGLGKFYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           R+ RN  T +++K D  RVV    +  LK  + 
Sbjct: 61 ERMVRNPATGEQIKKDADRVVKVTIAKALKDSVN 94


>gi|209885048|ref|YP_002288905.1| DNA-binding protein HU 1 [Oligotropha carboxidovorans OM5]
 gi|209873244|gb|ACI93040.1| DNA-binding protein HU 1 [Oligotropha carboxidovorans OM5]
          Length = 99

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 49/90 (54%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T   L  ++++E  LS+K +   +T L  ++     +G+ I+I       V+++ +R+
Sbjct: 10 TVTLKHLAAALAEEHELSKKTAEAILTDLVTKVTKHLKKGDRIRIVGLGILQVRKRAARM 69

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN  T + + I   + V F+AS  LK+ I
Sbjct: 70 GRNPATGEAIHIKASKKVAFRASKELKEAI 99


>gi|313205318|ref|YP_004043975.1| bacterial nucleoid protein hbs [Paludibacter propionicigenes WB4]
 gi|312444634|gb|ADQ80990.1| bacterial nucleoid protein Hbs [Paludibacter propionicigenes WB4]
          Length = 90

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 40/69 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+ E GLS+ D+ + +  +   + D+ V G+ + +  F TF V ++ +R G
Sbjct: 1  MNKAELINAIAAEAGLSKADAKKALDAVVKSVSDALVAGDKVSLVGFGTFSVSERSARSG 60

Query: 65 RNLQTNQEV 73
           N  T Q +
Sbjct: 61 INPATKQPI 69


>gi|326445075|ref|ZP_08219809.1| DNA-binding protein HU 1 [Streptomyces clavuligerus ATCC 27064]
          Length = 93

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + R++L+ ++++   ++RKD+   +T L   + +   +G E + I  F TF    + +R 
Sbjct: 1  MNRTELIAALTERAEVTRKDADAVLTALAETVGEIVAKGDEKVTIPGFLTFERIHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           RN QT   ++I     V   A S LK+ 
Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKEA 89


>gi|302542250|ref|ZP_07294592.1| putative DNA binding protein HU [Streptomyces hygroscopicus ATCC
          53653]
 gi|302459868|gb|EFL22961.1| putative DNA binding protein HU [Streptomyces himastatinicus ATCC
          53653]
          Length = 194

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F   ++ +R  
Sbjct: 1  MNKAQLVEAIADKVG-GRQQAAEAVDAVLDAIVRAVVGGDRVSVTGFGSFEKVERPARYA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN QT + V++    V  F+A    K  +    +
Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93


>gi|239918394|ref|YP_002957952.1| bacterial nucleoid DNA-binding protein [Micrococcus luteus NCTC
          2665]
 gi|289707035|ref|ZP_06503366.1| DNA-binding protein HU [Micrococcus luteus SK58]
 gi|239839601|gb|ACS31398.1| bacterial nucleoid DNA-binding protein [Micrococcus luteus NCTC
          2665]
 gi|289556221|gb|EFD49581.1| DNA-binding protein HU [Micrococcus luteus SK58]
          Length = 93

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 39/89 (43%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + R +LV ++++  G ++   +  +  LF        +GE + I  +      ++  R 
Sbjct: 2  AMNRKELVAAVAERSGNTQAAVSDVLDALFEVFTAQVKKGEKVSIPGWLAVERTERKERT 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T +E+ I     V   A S LK  
Sbjct: 62 GRNPRTGEEITIPAGHSVKVTAGSKLKAA 90


>gi|294053548|ref|YP_003547206.1| histone family protein DNA-binding protein [Coraliomargarita
          akajimensis DSM 45221]
 gi|293612881|gb|ADE53036.1| histone family protein DNA-binding protein [Coraliomargarita
          akajimensis DSM 45221]
          Length = 103

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS  +T+ D+V  I ++    +K+    V    + I ++  +G  +++ +F  F V+ + 
Sbjct: 1  MSNNLTKRDIVLDIYEKTDFPQKEVRETVQLTLDAIANALRQGRNVELRNFGVFEVQVRK 60

Query: 61 SRVGRNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95
          SR+GRN    +  V I  R V+ FKA   LK  + +
Sbjct: 61 SRIGRNPNKPETDVVIPTRAVIKFKAGKELKGALKE 96


>gi|282861336|ref|ZP_06270401.1| histone family protein DNA-binding protein [Streptomyces sp. ACTE]
 gi|282563994|gb|EFB69531.1| histone family protein DNA-binding protein [Streptomyces sp. ACTE]
          Length = 218

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 2/110 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1   MNKAQLVEAIADKVG-GRQQAADAVDVVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV-TSPSGS 113
           RN QT + V++    V  F+A    K  +    +  K  +  V  +P GS
Sbjct: 60  RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKKLPKGGEVSVKKAPKGS 109


>gi|223041461|ref|ZP_03611664.1| integration host factor, alpha chain [Actinobacillus minor 202]
 gi|240949160|ref|ZP_04753507.1| integration host factor subunit alpha [Actinobacillus minor
          NM305]
 gi|223017719|gb|EEF16126.1| integration host factor, alpha chain [Actinobacillus minor 202]
 gi|240296463|gb|EER47099.1| integration host factor subunit alpha [Actinobacillus minor
          NM305]
          Length = 98

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 54/91 (59%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+ +L +++ ++ G  ++ +  F+   F EI  +   GE +K+S F  F V++K +R 
Sbjct: 2  ALTKIELAEALVEKCGFEKRTAKLFIDQFFEEIKRALTTGEEVKLSGFGNFSVREKNARP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T + V +  RRVVVFKA   ++ R+ 
Sbjct: 62 GRNPKTGESVAVSARRVVVFKAGQKMRDRVE 92


>gi|170739317|ref|YP_001767972.1| histone family protein DNA-binding protein [Methylobacterium sp.
          4-46]
 gi|168193591|gb|ACA15538.1| histone family protein DNA-binding protein [Methylobacterium sp.
          4-46]
          Length = 102

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + R+ L++ ++     L    +   V  + + I ++ + G+ I++  F       + +R 
Sbjct: 1  MLRAQLIQRVAALNPHLPHGQADALVRAVLDRITEALMEGDRIELRGFGVLKTTAREARQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN +T + V++  +R V F+AS  + +R+ 
Sbjct: 61 SRNPRTGEAVEVPAKRDVAFRASREMHERLN 91


>gi|299135036|ref|ZP_07028227.1| histone family protein DNA-binding protein [Afipia sp. 1NLS2]
 gi|298590013|gb|EFI50217.1| histone family protein DNA-binding protein [Afipia sp. 1NLS2]
          Length = 99

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T   L  ++++E  LS+K +   +T +  +I     +GE I+I       V+++ +R+
Sbjct: 10 TVTLKHLAAALAEEHELSKKTAEAILTDMVTKITKHLKKGERIRIVGLGILQVRKRAARM 69

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN  T + + I   + V F+A+  LK+ +
Sbjct: 70 GRNPATGEAIHIKASKKVAFRAAKELKEAV 99


>gi|219883076|ref|YP_002478240.1| histone family protein DNA-binding protein [Arthrobacter
          chlorophenolicus A6]
 gi|219862082|gb|ACL42423.1| histone family protein DNA-binding protein [Arthrobacter
          chlorophenolicus A6]
          Length = 93

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 41/92 (44%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + R+ LV  ++++ G ++ D  R +  +F     S   GE I I  +       + +R 
Sbjct: 2  AVNRAQLVDQVAEKSGATKADVNRILDGMFEVFETSVAAGEKITIPGWLAVERTDRAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN QT + ++I     V   A S LK  I  
Sbjct: 62 GRNPQTGESIEIAAGHSVKLTAGSKLKAAIAK 93


>gi|291514301|emb|CBK63511.1| Bacterial nucleoid DNA-binding protein [Alistipes shahii WAL
          8301]
          Length = 96

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 47/94 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  I+ + G+ +  +   V      I ++ + GE + +  F +F VK++  +V 
Sbjct: 1  MTKAELVALITHQTGVEKTAAEAVVEAFMRNIKETMIAGEDVFLRGFGSFIVKERAEKVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN+  N  + I    +  FK S +  + + +  +
Sbjct: 61 RNITKNTTMVIPAHSIPAFKPSKVFLEAVKEGNK 94


>gi|302558180|ref|ZP_07310522.1| DNA binding protein HU [Streptomyces griseoflavus Tu4000]
 gi|302475798|gb|EFL38891.1| DNA binding protein HU [Streptomyces griseoflavus Tu4000]
          Length = 213

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV++I+ + G  R+ +   V  + + I  + V GE + ++ F +F    + +R  
Sbjct: 1  MNKAQLVEAIADKVG-GRQQAAEAVDHVLDAIVRAVVAGERVSVTGFGSFEKVDRPARYA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN QT + V++    V  F+A    K  +    +
Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93


>gi|150005930|ref|YP_001300674.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482]
 gi|149934354|gb|ABR41052.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482]
          Length = 94

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L K IS + G   +     V +L  E+ +S  +GE + +  F +F VKQ+  +  
Sbjct: 1  MTKAELCKKISAKTGCDAQTILAVVESLMVEVKESLEKGENVYLRGFGSFIVKQRAEKTT 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN+  N  + I    +  FK S  L K +  
Sbjct: 61 RNISKNTTIIIPAHNIPAFKPSKELVKLVNK 91


>gi|282879045|ref|ZP_06287805.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310]
 gi|281298779|gb|EFA91188.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310]
          Length = 90

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 41/71 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I++  G+S+  + + +    + I ++   G+ +++  F TF V ++ +R G
Sbjct: 1  MNKTELIDKIAEAAGISKVAAKKALDATTDSIKEALKEGDKVQLIGFGTFSVSERSAREG 60

Query: 65 RNLQTNQEVKI 75
           N  T ++++I
Sbjct: 61 INPLTKEKIQI 71


>gi|329296189|ref|ZP_08253525.1| integration host factor subunit alpha [Plautia stali symbiont]
          Length = 77

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 42/74 (56%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ + + ++ GLS++D+   V   F E+  +   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMSEYLFEKLGLSKRDAKELVEFFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQTNQEVKIDP 77
          GRN +T +  +  P
Sbjct: 62 GRNPKTGKIFQSPP 75


>gi|326408797|gb|ADZ65862.1| Integration host factor, alpha subunit [Brucella melitensis M28]
 gi|326538516|gb|ADZ86731.1| integration host factor, alpha subunit [Brucella melitensis M5-90]
          Length = 79

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/76 (48%), Positives = 55/76 (72%)

Query: 28  FVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASS 87
            V  + +E+CD+ V GE +K+SSFATF V+ K  R+GRN +T +EV I PRRV+ FKAS+
Sbjct: 1   MVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERIGRNPKTGEEVPILPRRVMTFKASN 60

Query: 88  ILKKRIMDDMRGRKCN 103
           +LK+RI+ + + R+  
Sbjct: 61  VLKQRILQEHQKRQGK 76


>gi|302554387|ref|ZP_07306729.1| histone protein DNA-binding protein [Streptomyces
          viridochromogenes DSM 40736]
 gi|302472005|gb|EFL35098.1| histone protein DNA-binding protein [Streptomyces
          viridochromogenes DSM 40736]
          Length = 214

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV++I+ + G  R+ +   V  + + I  S V GE + ++ F +F    + +R  
Sbjct: 1  MNKAQLVEAIADKMG-GRQQAADAVDHVLDAIVRSVVSGERVSVTGFGSFEKVDRPARYA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN QT + V++    V  F+A    K  +    +
Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93


>gi|237737109|ref|ZP_04567590.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
 gi|229420971|gb|EEO36018.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
          Length = 92

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLS-RKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+ + V    ++   + + D+ +        I +   +G+ I    F  F V ++ +R 
Sbjct: 1  MTKKEFVDLYFQKGEFTTKVDAEKKAMAFLATIEEVLEKGDEISFLGFGKFEVTERAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN QT +E+K++ ++ V FKA   L +++  
Sbjct: 61 CRNPQTGEEMKVEAKKAVKFKAGKALSEKVNK 92


>gi|308271765|emb|CBX28373.1| DNA-binding protein HU 1 [uncultured Desulfobacterium sp.]
          Length = 107

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + ++DLV  ++     ++ ++   V  +F  +  +   G+ +K++ F TF VK++ +R
Sbjct: 16 ENMNKTDLVNEVAAIVSNTK-EAKAVVDCIFTSMTAALKNGDEVKLAGFGTFKVKERKAR 74

Query: 63 VGRNLQTNQEVKI 75
           GRN +T +E+KI
Sbjct: 75 TGRNPKTGEEIKI 87


>gi|298373677|ref|ZP_06983666.1| DNA-binding protein HU [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274729|gb|EFI16281.1| DNA-binding protein HU [Bacteroidetes oral taxon 274 str. F0058]
          Length = 93

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  +S++ G+SR +  R + +  + + +S  +GE + + +F +F VKQ+ ++  
Sbjct: 1  MTKADIVNEVSRKTGISRDEVLRTLESFMDTVKNSLGKGENVYMRTFGSFIVKQRAAKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN+  N  +KI   ++  FK S      +  
Sbjct: 61 RNITKNTTIKIPAHKIPAFKPSKEFSAMVKK 91


>gi|256826372|ref|YP_003150332.1| nucleoid DNA-binding protein [Kytococcus sedentarius DSM 20547]
 gi|256689765|gb|ACV07567.1| bacterial nucleoid DNA-binding protein [Kytococcus sedentarius
          DSM 20547]
          Length = 91

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 46/88 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R++L  +I+++  +S KD+   ++ + + IC++  +GE + +    T    ++ +R G
Sbjct: 1  MNRTELASAIAQQADVSAKDAAAVLSAMGDVICETVGKGEKVSLPGLMTIERVERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN +T + ++I         A S LK  
Sbjct: 61 RNPRTGESMEIPASFGAKLSAGSALKAA 88


>gi|167754218|ref|ZP_02426345.1| hypothetical protein ALIPUT_02511 [Alistipes putredinis DSM
          17216]
 gi|237711927|ref|ZP_04542408.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA]
 gi|317474934|ref|ZP_07934203.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
 gi|167658843|gb|EDS02973.1| hypothetical protein ALIPUT_02511 [Alistipes putredinis DSM
          17216]
 gi|229454622|gb|EEO60343.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA]
 gi|316908837|gb|EFV30522.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 93

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 45/92 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V+ I+ + GL ++   + V    + +  S + GE + +  F +F +K +  +  
Sbjct: 1  MTKADIVREIATQTGLEKQVVLQVVEGFMDSVKSSMINGEEVYLRGFGSFIIKHRAEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN+  N  V +    +  FK S     R+  D
Sbjct: 61 RNISRNTTVIVPAHNIPAFKPSKAFAGRMKSD 92


>gi|53715708|ref|YP_101700.1| HU family DNA-binding protein [Bacteroides fragilis YCH46]
 gi|60683646|ref|YP_213790.1| putative histone-like DNA-binding protein HU4 [Bacteroides
          fragilis NCTC 9343]
 gi|253566476|ref|ZP_04843929.1| HU family DNA-binding protein [Bacteroides sp. 3_2_5]
 gi|265767345|ref|ZP_06095011.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_16]
 gi|52218573|dbj|BAD51166.1| DNA binding protein HU family [Bacteroides fragilis YCH46]
 gi|60495080|emb|CAH09899.1| putative histone-like DNA-binding protein HU4 [Bacteroides
          fragilis NCTC 9343]
 gi|251944648|gb|EES85123.1| HU family DNA-binding protein [Bacteroides sp. 3_2_5]
 gi|263252650|gb|EEZ24162.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_16]
 gi|301165158|emb|CBW24728.1| putative histone-like DNA-binding protein HU4 [Bacteroides
          fragilis 638R]
          Length = 96

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 47/85 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL++SI+ +  L ++     V  +   I ++  +GE++ +  F TF VK++ +R G
Sbjct: 1  MKKIDLIRSIAVKSNLKKEQIAIVVEGVMEAIAEALHQGESVTLVGFGTFEVKERKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           NL T + + I  ++ V FK  + +
Sbjct: 61 YNLSTGEIMTIPGKKTVRFKPGAKM 85


>gi|237807496|ref|YP_002891936.1| histone family protein DNA-binding protein [Tolumonas auensis DSM
          9187]
 gi|237499757|gb|ACQ92350.1| histone family protein DNA-binding protein [Tolumonas auensis DSM
          9187]
          Length = 91

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ E   ++  +   +  L   +    V GE + I    TF +  K +R+G
Sbjct: 1  MKKAELINAVATEMNTAKHIADEALFALGKVLQRQLVAGEPLLIPGIGTFSILNKAARLG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT + V+I  ++ V FKA+  L   + +
Sbjct: 61 RNPQTGETVEIAAKKTVKFKAAKALADAVNE 91


>gi|150005790|ref|YP_001300534.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482]
 gi|254882028|ref|ZP_05254738.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA]
 gi|294776169|ref|ZP_06741658.1| DNA-binding protein HU [Bacteroides vulgatus PC510]
 gi|319640964|ref|ZP_07995672.1| DNA-binding protein HU [Bacteroides sp. 3_1_40A]
 gi|149934214|gb|ABR40912.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482]
 gi|254834821|gb|EET15130.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA]
 gi|294449992|gb|EFG18503.1| DNA-binding protein HU [Bacteroides vulgatus PC510]
 gi|317387409|gb|EFV68280.1| DNA-binding protein HU [Bacteroides sp. 3_1_40A]
          Length = 90

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 47/88 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + +  +S++ G + KD+++ V+++   +      G  I I  F TF VK+K  R+ 
Sbjct: 1  MNNKEFISELSRKLGYTNKDTSQLVSSVIGVMTQELQDGNNIAIQGFGTFEVKKKLERIS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
           N  T Q + I P+ V+ +K S  LK++
Sbjct: 61 INPATQQRMLIPPKLVLTYKPSVTLKEK 88


>gi|154149063|ref|YP_001406367.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Campylobacter hominis ATCC BAA-381]
 gi|153805072|gb|ABS52079.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Campylobacter hominis ATCC BAA-381]
          Length = 107

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 51/92 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ +++++++ G ++K +T  V +    I D  V+G++I    F +F + ++ +R G
Sbjct: 1  MKKAEFIQAVAEKTGSTKKVATEVVDSALEVISDVLVKGDSISFIGFGSFGLAERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          +   TN+  K    +VV FK    LK+ + + 
Sbjct: 61 KVPGTNRTYKSPATKVVKFKVGKQLKEAVAEA 92


>gi|325269256|ref|ZP_08135875.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella
          multiformis DSM 16608]
 gi|324988485|gb|EGC20449.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella
          multiformis DSM 16608]
          Length = 97

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + +  ++   G ++ +S R V ++   +  S   G+ + +S F TF VK++  RV 
Sbjct: 1  MNNKEFIAELASRTGYTQDESQRMVKSVIELMGKSFEAGDPVSVSGFGTFEVKKRLERVM 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T Q + + P+ V+ FK ++ +K ++
Sbjct: 61 VNPSTGQRMLVPPKLVLNFKPAANIKGQV 89


>gi|281415410|ref|ZP_06247152.1| bacterial nucleoid DNA-binding protein [Micrococcus luteus NCTC
          2665]
          Length = 91

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 39/88 (44%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +LV ++++  G ++   +  +  LF        +GE + I  +      ++  R G
Sbjct: 1  MNRKELVAAVAERSGNTQAAVSDVLDALFEVFTAQVKKGEKVSIPGWLAVERTERKERTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN +T +E+ I     V   A S LK  
Sbjct: 61 RNPRTGEEITIPAGHSVKVTAGSKLKAA 88


>gi|254383272|ref|ZP_04998625.1| histone protein DNA-binding protein [Streptomyces sp. Mg1]
 gi|194342170|gb|EDX23136.1| histone protein DNA-binding protein [Streptomyces sp. Mg1]
          Length = 224

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 2/110 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1   MNKAQLVEAIADKLG-GRQQAADAVDAVLDAIVRATVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV-TSPSGS 113
           RN QT + V++    V  F+A    K  +    +  K  +  V  +P GS
Sbjct: 60  RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGTKKLPKGGEVSVKKAPKGS 109


>gi|237738391|ref|ZP_04568872.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817]
 gi|229420271|gb|EEO35318.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817]
          Length = 91

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLS-RKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+ D  K + ++   S + ++ R    + N I ++   G+ + I  +  F V +K  RV
Sbjct: 1  MTKKDFTKVLFEKGVFSSKAEAERKFEVILNTIEETLKAGDELNIIGWGKFEVVEKAERV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +E+ I  ++ V FKA   L +++ 
Sbjct: 61 GRNPKTGEEIVIPAKKTVKFKAGKTLVEKMN 91


>gi|326798549|ref|YP_004316368.1| histone family protein DNA-binding protein [Sphingobacterium sp.
          21]
 gi|326549313|gb|ADZ77698.1| histone family protein DNA-binding protein [Sphingobacterium sp.
          21]
          Length = 94

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 47/94 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++++  IS + GL + D    V   F  +  + V GE + +  F +F VK++  +  
Sbjct: 1  MTKAEIIAEISNKTGLEKVDVQETVEAFFKVVKGAMVGGENVYVRGFGSFVVKKRAKKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN+  N  + I    V  FK + +  +++ +  +
Sbjct: 61 RNISKNTAIIIPEHFVPSFKPAKVFVEKVKNGNK 94


>gi|315926169|ref|ZP_07922369.1| DNA-binding protein HU-beta [Pseudoramibacter alactolyticus ATCC
          23263]
 gi|315620613|gb|EFV00594.1| DNA-binding protein HU-beta [Pseudoramibacter alactolyticus ATCC
          23263]
          Length = 96

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 45/89 (50%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +S+ V +++K  GLS+KD+ + +  L   I ++   GE + + +F TF    +  R G N
Sbjct: 8  KSEFVSAMAKNAGLSKKDTRKELDALIKIIMETVKEGEKVLLMNFGTFDCYYRQGRPGSN 67

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           +T + + +       F+A    K+ + +
Sbjct: 68 PRTGEPIDVAACYSPRFRAGRAFKRALKE 96


>gi|326445430|ref|ZP_08220164.1| putative histone-like DNA-binding protein [Streptomyces
           clavuligerus ATCC 27064]
          Length = 130

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 1/110 (0%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ L+ +++ + G SRK +   V  + + I  + V GE + ++ F +F    + +R  
Sbjct: 1   MNKAQLINAVADKMG-SRKQAADAVEHVLDTIVRTVVAGERVSVTGFGSFEKVSRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY 114
           RN QT + V++    +  F+A    K       +  K       +P G++
Sbjct: 60  RNPQTGERVRVKKSSMPRFRAGQGFKDLASGTKKLPKKGVSIRKAPKGTF 109


>gi|237725389|ref|ZP_04555870.1| DNA-binding protein HU [Bacteroides sp. D4]
 gi|265753597|ref|ZP_06088952.1| DNA-binding protein HU [Bacteroides sp. 3_1_33FAA]
 gi|229436076|gb|EEO46153.1| DNA-binding protein HU [Bacteroides dorei 5_1_36/D4]
 gi|263235311|gb|EEZ20835.1| DNA-binding protein HU [Bacteroides sp. 3_1_33FAA]
          Length = 90

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 47/88 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + +  +S++ G + KD+++ V+++   +      G  I I  F TF VK+K  R+ 
Sbjct: 1  MNNKEFISELSRKLGYTNKDTSQLVSSVIGVMTQELQDGNNIVIQGFGTFEVKKKLERIS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
           N  T Q + I P+ V+ +K S  LK++
Sbjct: 61 INPATQQRMLIPPKLVLTYKPSVTLKEK 88


>gi|257125480|ref|YP_003163594.1| histone family protein DNA-binding protein [Leptotrichia buccalis
          C-1013-b]
 gi|257049419|gb|ACV38603.1| histone family protein DNA-binding protein [Leptotrichia buccalis
          C-1013-b]
          Length = 93

 Score =   99 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 43/73 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++ + V + +K  G ++K +   V    + + +S ++G++++   + TF VK++ +R G
Sbjct: 1  MSKKEFVDAYAKATGETKKRAEELVNQFLDTVEESLLKGDSVQFVGWGTFEVKERAARTG 60

Query: 65 RNLQTNQEVKIDP 77
           N QT +E++I  
Sbjct: 61 INPQTKEEIQIPE 73


>gi|182435719|ref|YP_001823438.1| putative histone-like DNA-binding protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326776344|ref|ZP_08235609.1| histone family protein DNA-binding protein [Streptomyces cf.
           griseus XylebKG-1]
 gi|178464235|dbj|BAG18755.1| putative histone-like DNA-binding protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326656677|gb|EGE41523.1| histone family protein DNA-binding protein [Streptomyces cf.
           griseus XylebKG-1]
          Length = 224

 Score =   99 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1   MNKAQLVEAIADKVG-GRQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           RN QT + V++    V  F+A    K  +    +  K +     +P GS
Sbjct: 60  RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKKLPKNDVAVKKAPKGS 108


>gi|302522114|ref|ZP_07274456.1| DNA-binding protein HU 2 [Streptomyces sp. SPB78]
 gi|318056528|ref|ZP_07975251.1| putative histone-like DNA-binding protein [Streptomyces sp.
           SA3_actG]
 gi|318076088|ref|ZP_07983420.1| putative histone-like DNA-binding protein [Streptomyces sp.
           SA3_actF]
 gi|302431009|gb|EFL02825.1| DNA-binding protein HU 2 [Streptomyces sp. SPB78]
          Length = 209

 Score =   99 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 1/109 (0%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+++   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1   MNKAQLVEAIADKLG-GRQNAADAVDVVLDAIVRATVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           RN QT + V++    V  F+A    K  +    +  K +     +P GS
Sbjct: 60  RNPQTGERVRVKKTSVPRFRAGQGFKDLVAGTKKLPKNDVAVKKAPKGS 108


>gi|295836329|ref|ZP_06823262.1| DNA binding protein HU [Streptomyces sp. SPB74]
 gi|197699336|gb|EDY46269.1| DNA binding protein HU [Streptomyces sp. SPB74]
          Length = 209

 Score =   99 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 1/109 (0%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+++   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1   MNKAQLVEAIADKLG-GRQNAADAVDVVLDAIVRATVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           RN QT + V++    V  F+A    K  +    +  K +     +P GS
Sbjct: 60  RNPQTGERVRVKKTSVPRFRAGQGFKDLVAGTKKLPKNDVAVKKAPKGS 108


>gi|302537148|ref|ZP_07289490.1| predicted protein [Streptomyces sp. C]
 gi|302446043|gb|EFL17859.1| predicted protein [Streptomyces sp. C]
          Length = 248

 Score =   99 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 50/103 (48%), Gaps = 1/103 (0%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            + + ++ LV++I+ + G  R+ +   V  + + +  + V G+ + ++ F +F    + +
Sbjct: 16  GEDVNKAQLVEAIADKLG-GRQQAADAVDAVLDAMVRAVVAGDRVSVTGFGSFEKVDRPA 74

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           R  RN QT + V++    V  F+A    K  +    +  K ++
Sbjct: 75  RYARNPQTGERVRVKKTSVPRFRAGQGFKDLVSGTKKLPKGDE 117


>gi|255016156|ref|ZP_05288282.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_7]
 gi|256842574|ref|ZP_05548076.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
 gi|256735930|gb|EEU49262.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
          Length = 98

 Score =   99 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 48/92 (52%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R +LV+S+ +E GL +      V  L   +      GE+I +  F +F   Q+  R+
Sbjct: 7  SMNRGELVQSLVEETGLPKNVVRAVVNALPTVVAKGIREGESISMKGFGSFVPWQQSERL 66

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN +T +EV I PR  V FKA S L K + +
Sbjct: 67 ARNPKTGEEVMITPRVSVKFKAGSDLLKELNE 98


>gi|237709945|ref|ZP_04540426.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA]
 gi|229456038|gb|EEO61759.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA]
          Length = 90

 Score =   99 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 46/88 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + +  +S+  G + KD+++ V+++   +      G  I I  F TF VK+K  R+ 
Sbjct: 1  MNNKEFISELSRRLGYTNKDTSQLVSSVIGVMTQELQDGNNIVIQGFGTFEVKKKLERIS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
           N  T Q + I P+ V+ +K S  LK++
Sbjct: 61 INPATQQRMLIPPKLVLTYKPSVTLKEK 88


>gi|148550580|ref|YP_001260019.1| histone family protein DNA-binding protein [Sphingomonas
          wittichii RW1]
 gi|148502999|gb|ABQ71252.1| histone family protein DNA-binding protein [Sphingomonas
          wittichii RW1]
          Length = 92

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  SDL   ++   G ++ D+ + V  +F  I D+A +GE + ++ F  F VK   +R G
Sbjct: 2  MNNSDLADHLAGATGATKADARKAVDLVFAAIADAAAKGEEVSLNGFGKFKVKDVLAREG 61

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T + +KI   + + F  +  +K R+ 
Sbjct: 62 RNPATGETIKIAASKKLSFSVAKAVKDRLN 91


>gi|91763239|ref|ZP_01265203.1| Bacterial DNA-binding protein [Candidatus Pelagibacter ubique
          HTCC1002]
 gi|91717652|gb|EAS84303.1| Bacterial DNA-binding protein [Candidatus Pelagibacter ubique
          HTCC1002]
          Length = 100

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 1  MSKT-ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          M +T +T+ DL+ SI  + G S+  S   +      I D+    + +K+S F TF ++ K
Sbjct: 1  MKRTNLTKKDLINSIYMQIGFSKNISENLIDDFLITIVDNLKIEKKLKLSKFGTFSIRAK 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           SR+GRN +T ++  I  R VV+FKAS   K  + 
Sbjct: 61 KSRIGRNPKTKEQTTISNRDVVLFKASKEFKDLVN 95


>gi|152966297|ref|YP_001362081.1| histone family protein DNA-binding protein [Kineococcus
          radiotolerans SRS30216]
 gi|151360814|gb|ABS03817.1| histone family protein DNA-binding protein [Kineococcus
          radiotolerans SRS30216]
          Length = 185

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++++V ++    G  RK++T  V  +   I  +  +G+ I IS F TF  + + +R G
Sbjct: 1  MNKAEMVDALETRLG-GRKEATTAVEAVIELIQLTVAKGDKIAISGFGTFEKQVRNARTG 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + VKI    V  F+  +  K+ + D
Sbjct: 60 RNPRTGEAVKIKKTSVPRFRPGTAFKEVVSD 90


>gi|313202747|ref|YP_004041404.1| histone family protein DNA-binding protein [Paludibacter
          propionicigenes WB4]
 gi|312442063|gb|ADQ78419.1| histone family protein DNA-binding protein [Paludibacter
          propionicigenes WB4]
          Length = 90

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 39/85 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +      V      + DS  + E + +  F +F +KQ+  +  
Sbjct: 1  MTKADIVNEIAKNTGIDKVTVLTTVEAFMETVKDSLSKNENVYLRGFGSFVIKQRAEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  + I    +  FK +   
Sbjct: 61 RNISKNTTIIIPAHNIPSFKPAKTF 85


>gi|85057759|ref|YP_456675.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
          AYWB]
 gi|84789864|gb|ABC65596.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
          AYWB]
          Length = 106

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE---AIKISSFATFHVKQKGS 61
          + +   ++ ++++ G+++K++ +F+      I  +    E    + ++ F TF  K + +
Sbjct: 1  MNKLKFLRKLAEKNGITKKEANKFLNNFIELIYQTFEETEEYKKVTLTGFGTFGAKYRNA 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          R G+N +T + + I  ++V  FK S +LK
Sbjct: 61 REGKNPRTGKTIYIPAKKVPTFKFSKLLK 89


>gi|288802260|ref|ZP_06407700.1| DNA-binding protein HU [Prevotella melaninogenica D18]
 gi|302346648|ref|YP_003814946.1| DNA-binding protein HU [Prevotella melaninogenica ATCC 25845]
 gi|288335227|gb|EFC73662.1| DNA-binding protein HU [Prevotella melaninogenica D18]
 gi|302151019|gb|ADK97280.1| DNA-binding protein HU [Prevotella melaninogenica ATCC 25845]
          Length = 92

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63
          +T++D++  I+   G+++KD +  V +    I DS   + E + +  F +F VK +  + 
Sbjct: 1  MTKADIINEIATSTGIAKKDVSAVVESFMETIKDSLLEKKENVYLRGFGSFIVKHRAEKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN+  N  + I       FK +    +
Sbjct: 61 ARNISKNTTITIPAHDFPSFKPAKTFIE 88


>gi|251773380|gb|EES53929.1| histone family protein DNA-binding protein [Leptospirillum
          ferrodiazotrophum]
          Length = 99

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+SDL   +++EF G++   +   +    + + +    G+ ++I  F    V +K  R 
Sbjct: 1  MTKSDLAARLAREFPGITCPLARTLIDYFLDAMKEGLANGDTVEIRDFGVLRVHEKAPRK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T   V I  R+ V FK    LK  
Sbjct: 61 GRNPKTGASVLIPARKTVRFKRGRALKNA 89


>gi|94499890|ref|ZP_01306426.1| Histone-like DNA-binding protein [Oceanobacter sp. RED65]
 gi|94428091|gb|EAT13065.1| Histone-like DNA-binding protein [Oceanobacter sp. RED65]
          Length = 91

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L  ++++   +S++ ++  +T + ++I +S  + +++ +  F +F  K +  R G
Sbjct: 1  MRKPELAAAVAENADISKEKASEIITIITDQITESLRKNDSVSLIGFGSFVQKHRPERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +N QT + + I     V FK    LK  + +
Sbjct: 61 KNPQTGEAITIKASNSVGFKPGKALKDAVNN 91


>gi|307566102|ref|ZP_07628560.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
 gi|307345290|gb|EFN90669.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
          Length = 92

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63
          +T++D++  I+   G+S+KD +  V +    I DS   + E + +  F +F VK +  + 
Sbjct: 1  MTKADIINEIATGTGISKKDVSAVVESFMEAIKDSLLEKKENVYLRGFGSFIVKHRAEKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN+  N  + I       FK +    +
Sbjct: 61 ARNISKNTTLTIPAHDFPSFKPAKTFIE 88


>gi|281420827|ref|ZP_06251826.1| DNA-binding protein HU [Prevotella copri DSM 18205]
 gi|281405119|gb|EFB35799.1| DNA-binding protein HU [Prevotella copri DSM 18205]
          Length = 94

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63
          +T++D++  ++   G+ +K+    V     E+      + + + +  F +F++K + ++ 
Sbjct: 1  MTKADIINEVAIATGMPKKEVGTVVEAFMEEVKKCLIEKKDNVYLRGFGSFNIKHRAAKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           RN+  N  + I    +  FK S    + + + 
Sbjct: 61 ARNISKNTTITIPAHDLPSFKPSKSFIEEMQNA 93


>gi|312889709|ref|ZP_07749257.1| histone family protein DNA-binding protein [Mucilaginibacter
          paludis DSM 18603]
 gi|311297829|gb|EFQ74950.1| histone family protein DNA-binding protein [Mucilaginibacter
          paludis DSM 18603]
          Length = 101

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 48/94 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D++  I+ + G  ++ +   +   F  +  S   GE + +  F TF VK++ +++G
Sbjct: 1  MTKADVIAGITAKTGKGKEATETIIDAFFEVVQSSLTNGEDVFVRGFGTFLVKKRAAKIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN+  N  V+I    +  F+     K ++   +R
Sbjct: 61 RNITKNTAVQIPESYIPAFRPGDEFKNKVKAAVR 94


>gi|94986874|ref|YP_594807.1| nucleoid DNA-binding protein [Lawsonia intracellularis
          PHE/MN1-00]
 gi|94731123|emb|CAJ54485.1| Bacterial nucleoid DNA-binding protein [Lawsonia intracellularis
          PHE/MN1-00]
          Length = 96

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 48/95 (50%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+  +T+ D++ +I ++   ++ D    V TL + +  +      + IS F  F    K 
Sbjct: 1  MNNVLTKVDIIDAIYEKINNNKADIKNIVETLLSIMKQAIKTDNTLLISGFGKFEAYSKH 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +R GRN QT++ + +  R+V+VF+ S   +  +  
Sbjct: 61 TRKGRNPQTDEAITLPSRKVIVFRLSKKFRTELNK 95


>gi|332298535|ref|YP_004440457.1| histone family protein DNA-binding protein [Treponema
          brennaborense DSM 12168]
 gi|332181638|gb|AEE17326.1| histone family protein DNA-binding protein [Treponema
          brennaborense DSM 12168]
          Length = 101

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR-V 63
          +T+ DL++S+ +     ++       +L ++I +S   G  I++  F TF  + +  R  
Sbjct: 4  VTKYDLIESVYQNTKCEKRVVQEVFESLLDQIKESLKSGATIELRGFGTFEPRLRKGRKK 63

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN +T   + + P  +  F++   LK  + +
Sbjct: 64 ARNPKTGDHLSVPPHYIAAFRSGQELKNALWN 95


>gi|329956611|ref|ZP_08297184.1| DNA-binding protein HU-beta [Bacteroides clarus YIT 12056]
 gi|328523983|gb|EGF51059.1| DNA-binding protein HU-beta [Bacteroides clarus YIT 12056]
          Length = 88

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 39/71 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +++ E GLS+ DS R +      +  +   G+ + +  F TF V ++  RVG
Sbjct: 1  MNKSELISAMAAEAGLSKADSKRALDAFIASVTKALKAGDKVALVGFGTFSVMERAGRVG 60

Query: 65 RNLQTNQEVKI 75
           N  T + ++I
Sbjct: 61 INPATKKPIQI 71


>gi|152965328|ref|YP_001361112.1| histone family protein DNA-binding protein [Kineococcus
          radiotolerans SRS30216]
 gi|151359845|gb|ABS02848.1| histone family protein DNA-binding protein [Kineococcus
          radiotolerans SRS30216]
          Length = 179

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++++V ++    G  RK +   V  +   I  +  +G+ + IS F TF  + + +R G
Sbjct: 1  MNKAEMVDALEARLG-GRKQAVSAVEAVVELIQLTVAKGDKVAISGFGTFEKQARNARTG 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + VKI    V  F+  +  K+ + D
Sbjct: 60 RNPRTGEAVKIKKTSVPRFRPGTAFKEIVSD 90


>gi|225012358|ref|ZP_03702794.1| histone family protein DNA-binding protein [Flavobacteria bacterium
           MS024-2A]
 gi|225003335|gb|EEG41309.1| histone family protein DNA-binding protein [Flavobacteria bacterium
           MS024-2A]
          Length = 97

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 48/97 (49%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D+V +IS + G+ R D    V     E+  S  +GE + +  F +F +K +  + G
Sbjct: 1   MTKADIVSNISDQLGIDRADVQATVEKFMKEVKGSLEKGENVYLRGFGSFIIKTRAEKTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           RN+  N  +KI    +  FK + I  K +   +   K
Sbjct: 61  RNISKNIALKIPAHNIPSFKPAKIFVKGVKSKVPVSK 97


>gi|159036797|ref|YP_001536050.1| histone family protein DNA-binding protein [Salinispora arenicola
          CNS-205]
 gi|157915632|gb|ABV97059.1| histone family protein DNA-binding protein [Salinispora arenicola
          CNS-205]
          Length = 209

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++S++   G  RK +T  +  +  E+  +  +GE + I+ F  F  + +G+R  
Sbjct: 1  MNKAELIESLAVRLG-DRKTATAALDAVLTEVQAAVTKGEKVSITGFGAFEKRVRGARTA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T + VK+    V  F+  +  K+ +   
Sbjct: 60 RNPRTGEAVKVKKTSVPTFRPGTGFKEMVASG 91


>gi|189463294|ref|ZP_03012079.1| hypothetical protein BACCOP_04011 [Bacteroides coprocola DSM
          17136]
 gi|189430024|gb|EDU99008.1| hypothetical protein BACCOP_04011 [Bacteroides coprocola DSM
          17136]
          Length = 91

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 39/85 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I++  G+ +      +    + + +S    E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEIARNTGIDKATVLTTLEAFMDSVKESLSNDENVYLRGFGSFIVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  + I    +  FK +   
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85


>gi|315918607|ref|ZP_07914847.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692482|gb|EFS29317.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 92

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 45/89 (50%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+   +    +++  G + KD++  + +L + +      G  + I  F +F VK+K  R+
Sbjct: 2  TMNNKEFTSELAERLGYTIKDTSELMNSLLSSMTQELEEGNVVAIQGFGSFEVKKKAERI 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
            N  + Q + + P+ V+ ++ S+ LK +
Sbjct: 62 SINPASKQRMLVPPKLVLSYRPSNTLKDK 90


>gi|302343276|ref|YP_003807805.1| histone family protein DNA-binding protein [Desulfarculus baarsii
          DSM 2075]
 gi|301639889|gb|ADK85211.1| histone family protein DNA-binding protein [Desulfarculus baarsii
          DSM 2075]
          Length = 101

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 49/93 (52%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  ++  + +   L +  S   V T    I +S    + + IS F  F VK K +R 
Sbjct: 2  ALTKDHIISEVFERTQLPKSRSREVVETTLEIIKNSLADSDDLLISGFGKFLVKDKRARR 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN QT  ++K+  R+VVVFK S +L+K +  +
Sbjct: 62 GRNPQTKADMKLRARKVVVFKTSGVLRKHLNGE 94


>gi|224026370|ref|ZP_03644736.1| hypothetical protein BACCOPRO_03126 [Bacteroides coprophilus DSM
          18228]
 gi|224019606|gb|EEF77604.1| hypothetical protein BACCOPRO_03126 [Bacteroides coprophilus DSM
          18228]
          Length = 91

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 40/85 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +      +    + + DS  + E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEIAKNTGIDKATVLTTLEAFMDSVKDSLSKDENVYLRGFGSFIVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  + I    +  FK +   
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85


>gi|21672413|ref|NP_660480.1| integration host factor alpha-subunit [Buchnera aphidicola str.
          Sg (Schizaphis graminum)]
 gi|25008628|sp|Q8KA11|IHFA_BUCAP RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|21623022|gb|AAM67691.1| integration host factor Alpha-subunit [Buchnera aphidicola str.
          Sg (Schizaphis graminum)]
          Length = 100

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 55/90 (61%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++ + +++ ++  L+++DS  FV   F E+  S  +GE +K+S F  F +K K  R G
Sbjct: 3  VTKAAISENLFEKLKLTKRDSKEFVEFFFEEVRKSLEKGEDVKLSGFGNFQLKNKKERPG 62

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T + + I  RRVV+FKA   LK R+ 
Sbjct: 63 RNPRTGENILITQRRVVIFKAGQKLKNRVE 92


>gi|282881458|ref|ZP_06290132.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1]
 gi|281304684|gb|EFA96770.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1]
          Length = 94

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63
          +T++D++  I+   GL +K+    V +  +++ +S   + E + +  F +F +K + ++ 
Sbjct: 1  MTKADIINEIAASTGLQKKEVAVVVESFMSKVKESLLEKKENVYLRGFGSFIIKHRAAKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           RN+Q N  + ID   +  FK S      + + 
Sbjct: 61 ARNIQKNTTITIDAHNLPSFKPSKSFVNAMKES 93


>gi|117925411|ref|YP_866028.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
 gi|117609167|gb|ABK44622.1| histone family protein DNA-binding protein [Magnetococcus sp.
          MC-1]
          Length = 109

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 45/87 (51%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          L++ I+++  LS    T  V  L + + D   R E + +  F  F VK+    +GR+ QT
Sbjct: 6  LIQQIARKRNLSIAQVTEIVQDLLDGVEDCLSRHEPVILPEFGQFAVKKVPPWLGRHPQT 65

Query: 70 NQEVKIDPRRVVVFKASSILKKRIMDD 96
           + +K+  + V  FK+ S L+KR+   
Sbjct: 66 GEMMKLPGKNVPFFKSDSELRKRLNGG 92


>gi|312977270|ref|ZP_07789018.1| DNA-binding protein HU [Lactobacillus crispatus CTV-05]
 gi|310895701|gb|EFQ44767.1| DNA-binding protein HU [Lactobacillus crispatus CTV-05]
          Length = 59

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          + ++  +G  +++  F TF V+ + +R GRN QT  E++I    V  FK    LK  + 
Sbjct: 1  MQENLAKGFKVQLIGFGTFEVRHRAARKGRNPQTGDEIEIPASEVPAFKPGKALKDAVK 59


>gi|254284406|ref|ZP_04959374.1| integration host factor, beta subunit [gamma proteobacterium
          NOR51-B]
 gi|219680609|gb|EED36958.1| integration host factor, beta subunit [gamma proteobacterium
          NOR51-B]
          Length = 73

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 36/71 (50%)

Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88
          +  + + + ++   GE I+I  F +F +  +  R GRN +T   V++  + V  FK    
Sbjct: 1  MKLIIDHMAEALASGERIEIRGFGSFSLHYREPRKGRNPKTGDTVELSGKYVPHFKPGKE 60

Query: 89 LKKRIMDDMRG 99
          L++R+   ++ 
Sbjct: 61 LRERVNRSLKA 71


>gi|332664549|ref|YP_004447337.1| histone family protein DNA-binding protein [Haliscomenobacter
          hydrossis DSM 1100]
 gi|332333363|gb|AEE50464.1| histone family protein DNA-binding protein [Haliscomenobacter
          hydrossis DSM 1100]
          Length = 108

 Score = 99.2 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 53/93 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV +IS++ G+ + D    + T F E+  S   GE + I  F +F +K++  ++G
Sbjct: 1  MRKADLVAAISEKTGVPKVDVLVTLETFFKEVKGSLADGENVYIRGFGSFVIKRRAKKIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          R+++ N  ++I    +  FK + I  +++  ++
Sbjct: 61 RHIKKNVAIEIPEHFIPSFKPAKIFVEQVKANV 93


>gi|88607772|ref|YP_505798.1| integration host factor, alpha subunit [Anaplasma phagocytophilum
           HZ]
 gi|88598835|gb|ABD44305.1| integration host factor, alpha subunit [Anaplasma phagocytophilum
           HZ]
          Length = 106

 Score = 99.2 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 57/96 (59%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           M +T+T++ +   I++E GLSR+DS   V  + +E+  S VR  ++KISSF  F V +K 
Sbjct: 9   MVQTLTKARIASMINREIGLSREDSLAIVGEILDEMSSSLVRCGSLKISSFGIFKVIRKK 68

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
            RVGRN +T ++  ++    V F  S  +K+ I  D
Sbjct: 69  ERVGRNPKTLEKFVVEEHNTVTFCPSVTVKRFINGD 104


>gi|269102460|ref|ZP_06155157.1| integration host factor alpha subunit [Photobacterium damselae
          subsp. damselae CIP 102761]
 gi|268162358|gb|EEZ40854.1| integration host factor alpha subunit [Photobacterium damselae
          subsp. damselae CIP 102761]
          Length = 72

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 36/67 (53%)

Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88
          +   F E+  +   GE +K+S F  F ++ K  R GRN +T +++ I  RRVV F+    
Sbjct: 1  MEVFFEEVRKALENGEQVKLSGFGNFDLRDKNERPGRNPKTGEDIPITARRVVTFRPGQK 60

Query: 89 LKKRIMD 95
          LK R+  
Sbjct: 61 LKARVEK 67


>gi|258511174|ref|YP_003184608.1| histone family protein DNA-binding protein [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477900|gb|ACV58219.1| histone family protein DNA-binding protein [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 90

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV  +    GL +    + + T      +    GE + +     F    + +R  
Sbjct: 1  MNKGELVAEVQARVGLPKSQVLQVLNTFCEVTTERLQAGEEVSLPPLGKFQYVMRSARRQ 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN QT + + +  +  V F+ S  LK R+ 
Sbjct: 61 RNPQTGEMIDVPEKATVRFRPSGALKGRVN 90


>gi|71900575|ref|ZP_00682702.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
          Ann-1]
 gi|71729632|gb|EAO31736.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
          Ann-1]
          Length = 69

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 39/66 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++    LS+ ++ R +  + NEI ++  +G+++ +  F TF V+ +  R G
Sbjct: 1  MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKKGDSVTLVGFGTFQVRPRAERPG 60

Query: 65 RNLQTN 70
          RN ++ 
Sbjct: 61 RNPKSG 66


>gi|332885920|gb|EGK06164.1| hypothetical protein HMPREF9456_00038 [Dysgonomonas mossii DSM
          22836]
          Length = 91

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 43/91 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +    + V +  + + DS  + E + +  F +F VK +  +  
Sbjct: 1  MTKADIVNEIAKNTGIDKATVLKTVESFMDVVKDSLSKNENVYLRGFGSFIVKTRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN+  N  + I    +  FK +     ++  
Sbjct: 61 RNISKNTTIIIPAHSIPAFKPAKTFITQVRK 91


>gi|269958260|ref|YP_003328047.1| integration host factor, alpha subunit [Anaplasma centrale str.
          Israel]
 gi|269848089|gb|ACZ48733.1| integration host factor, alpha subunit [Anaplasma centrale str.
          Israel]
          Length = 98

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 57/96 (59%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++T+TR+ L  +I++E G+SR+D+   V  + +E+  S VR   +KISSF TF V +K 
Sbjct: 1  MAQTLTRAQLADTINREIGISREDALVLVGEMLDEMVSSLVRDGLLKISSFGTFKVIRKK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           RV RN +T ++  +     V F  S  +K+ I  +
Sbjct: 61 ERVCRNPKTLEQFIVKEHNTVTFCPSVTMKRLINGE 96


>gi|269214903|ref|ZP_06158902.1| integration host factor subunit beta [Neisseria lactamica ATCC
          23970]
 gi|269208725|gb|EEZ75180.1| integration host factor subunit beta [Neisseria lactamica ATCC
          23970]
          Length = 80

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 39/69 (56%)

Query: 30 TTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSIL 89
           +L + +  S  RG+ I+I  F +F +  + +R+GRN +T + V++  + V  FK    L
Sbjct: 8  ESLGDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNPKTGERVEVPEKHVPHFKPGKEL 67

Query: 90 KKRIMDDMR 98
          ++R+   ++
Sbjct: 68 RERVDLALK 76


>gi|152986799|ref|YP_001346553.1| putative DNA binding protein [Pseudomonas aeruginosa PA7]
 gi|150961957|gb|ABR83982.1| probable DNA binding protein [Pseudomonas aeruginosa PA7]
          Length = 93

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 39/92 (42%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  L++ I++     +      +  L + + D+      I +       V ++ +R 
Sbjct: 2  ALTKDQLIQDIAEAIDAPKTTVRSALDQLTDIVKDALENDGEITLPGIGKLKVSERPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN QT + ++I  +RV  F  +  L   I  
Sbjct: 62 GRNPQTGKAIEIAAKRVAKFVPAKALTDAING 93


>gi|114326682|ref|YP_743839.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1]
 gi|114314856|gb|ABI60916.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1]
          Length = 101

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 41/91 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  +DL+  I+K    ++      V+     I  +   GE ++IS    F V ++ +R G
Sbjct: 1  MNHADLIDKIAKSTDQTKATVDAVVSAAIETISATLKAGEEVRISGLGIFDVSERAARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN QT   ++I   R   F+A   LK  +  
Sbjct: 61 RNPQTGATIEIAATRAARFRAGKALKDAVNG 91


>gi|163781827|ref|ZP_02176827.1| hypothetical protein HG1285_03053 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883047|gb|EDP76551.1| hypothetical protein HG1285_03053 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 90

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 53/90 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  ++K+ G+++K++   +      I  +  +GE I I     F VK++ +R G
Sbjct: 1  MTKAELVAEVAKQAGITKKEADAALKAAVAAIAKALKKGERIAIPGLGIFTVKKRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +T Q ++I  R+VV FK +  L++ I 
Sbjct: 61 RNPRTGQVIQIPARKVVAFKPAKDLRESIK 90


>gi|325268537|ref|ZP_08135167.1| DNA-binding protein HU-beta [Prevotella multiformis DSM 16608]
 gi|324989065|gb|EGC21018.1| DNA-binding protein HU-beta [Prevotella multiformis DSM 16608]
          Length = 91

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 49/90 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+   GLS+ D+ + +      I  + V G+ +++  F TF V ++ +  G
Sbjct: 1  MNKTELIEKIAASAGLSKADAKKALDATTEAIKGALVAGDKVQLVGFGTFAVNERPAHEG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T ++++I  ++V  FKA + L   + 
Sbjct: 61 INPATKEKIQIAAKKVAKFKAGAELADAVN 90


>gi|330466240|ref|YP_004403983.1| histone family protein DNA-binding protein [Verrucosispora maris
          AB-18-032]
 gi|328809211|gb|AEB43383.1| histone family protein DNA-binding protein [Verrucosispora maris
          AB-18-032]
          Length = 219

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+++++   G  RK +T  +  +  E+  +  +GE + I+ F  F  + +G+R  
Sbjct: 1  MNKAELIEALAVRLG-DRKTATAALDAVLAEVQAAVTKGEKVAITGFGAFEKRVRGARTA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T + VK+    V  F+  +  K+ +   
Sbjct: 60 RNPRTGEAVKVKKTSVPTFRPGAGFKEMVASG 91


>gi|238897899|ref|YP_002923578.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
          pisum)]
 gi|229465656|gb|ACQ67430.1| integration host factor (IHF), DNA-binding protein, beta subunit
          [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
          pisum)]
          Length = 95

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 5  ITRSDLVKSISKEFGLSRKD-STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+SD V+ + K    +  +     V  +   + +    GE I+I    +F ++ +  R 
Sbjct: 1  MTKSDFVERLVKRLDSTDPEMIHEIVKRILQYMSEKLSEGERIEIRGLGSFSLRYRRPRT 60

Query: 64 GRNLQTNQE-VKIDPRRVVVFKASSILKKRIM 94
           RN +T    VK+  + V+ FK    L+ R+ 
Sbjct: 61 ARNPKTGDSGVKVKSKYVLHFKPGKKLRDRVN 92


>gi|325856433|ref|ZP_08172149.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A]
 gi|327312503|ref|YP_004327940.1| DNA-binding protein HU [Prevotella denticola F0289]
 gi|325483617|gb|EGC86589.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A]
 gi|326945422|gb|AEA21307.1| DNA-binding protein HU [Prevotella denticola F0289]
          Length = 92

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63
          +T++D++  I+   G+++KD +  V +    I  S   + E + +  F +F VK +  + 
Sbjct: 1  MTKADIINEIATSTGIAKKDVSAVVESFMEAIKGSLLEKKENVYLRGFGSFIVKHRAEKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN+  N  + I       FK +    +
Sbjct: 61 ARNISKNTTITIPAHNFPSFKPAKTFIE 88


>gi|257451488|ref|ZP_05616787.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
 gi|317058069|ref|ZP_07922554.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
 gi|313683745|gb|EFS20580.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
          Length = 92

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+ + ++   ++    ++ ++ + +T+    + + A+  E I  S F  F V +K  R+
Sbjct: 1  MTKKEFIELYFRKGKFSTKTEAEKAMTSFLETLEEVALLNENILFSGFGKFEVVEKAERL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +EV+I  ++ + FK    L +++ +
Sbjct: 61 GRNPKTGEEVRIPAKKSMKFKPGKSLDEKLNN 92


>gi|29346322|ref|NP_809825.1| DNA-binding protein HU [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568257|ref|ZP_04845668.1| DNA-binding protein HU [Bacteroides sp. 1_1_6]
 gi|298385676|ref|ZP_06995234.1| HimA protein [Bacteroides sp. 1_1_14]
 gi|29338217|gb|AAO76019.1| DNA-binding protein HU [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842330|gb|EES70410.1| DNA-binding protein HU [Bacteroides sp. 1_1_6]
 gi|298261817|gb|EFI04683.1| HimA protein [Bacteroides sp. 1_1_14]
          Length = 90

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 46/88 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   +    ++   G + KD++  +++L +++      G AI I  F +F VK+K  R+ 
Sbjct: 1  MNNKEFTSELADRLGYTIKDTSELISSLLSDMTQELEDGNAIAIQGFGSFEVKKKAERIS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
           N  T Q + + P+ V+ ++ S+ LK +
Sbjct: 61 INPSTKQRMLVPPKLVLTYRPSNTLKDK 88


>gi|15807733|ref|NP_285388.1| DNA-binding protein HB [Deinococcus radiodurans R1]
 gi|6460544|gb|AAF12250.1|AE001862_76 DNA-binding protein HB [Deinococcus radiodurans R1]
          Length = 137

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 47/84 (55%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
           ++ LV+ ++ + GL++K S   ++++   +  +   G+++ +    T  VK+  +R G  
Sbjct: 51  KTQLVEMVADQTGLTKKQSEEAISSMLECVVSALQSGKSVGLPGLGTLSVKETAARTGVR 110

Query: 67  LQTNQEVKIDPRRVVVFKASSILK 90
             T+++++I   + V FK +S LK
Sbjct: 111 PGTSEKIQIPAGKKVAFKVASTLK 134


>gi|254443383|ref|ZP_05056859.1| DNA-binding protein HU [Verrucomicrobiae bacterium DG1235]
 gi|198257691|gb|EDY81999.1| DNA-binding protein HU [Verrucomicrobiae bacterium DG1235]
          Length = 104

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 2/97 (2%)

Query: 1  MSKTITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          MS  +T+ D+V  I ++   + +      V    + I D+   G  +++ +F  F V+++
Sbjct: 1  MSNNLTKRDIVLRIFEKTKDIPQSKIQDTVQMTLDIILDALAEGRNVELRNFGVFEVQKR 60

Query: 60 GSRVGRNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95
           +RVGRN    +  V I  R VV FKA  +LK +I D
Sbjct: 61 KARVGRNPNRPETDVVIPTRAVVKFKAGKVLKAKIKD 97


>gi|317125453|ref|YP_004099565.1| bacterial nucleoid protein Hbs [Intrasporangium calvum DSM 43043]
 gi|315589541|gb|ADU48838.1| bacterial nucleoid protein Hbs [Intrasporangium calvum DSM 43043]
          Length = 228

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 1/100 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++L+ ++    G SR+ ++  +  + + +     +G  + I+ F TF    + +R G
Sbjct: 1   MNKAELIGALEARLG-SRRVASDALEAVLDIVIREVAKGGKVGITGFGTFERANRAARTG 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           RN +T   VKI   R+  F+A +  K  +    +  K   
Sbjct: 60  RNPKTGDTVKIKKTRIPKFRAGTNFKDIVSGQKKLAKTGS 99


>gi|307566168|ref|ZP_07628623.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
 gi|307345133|gb|EFN90515.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
          Length = 91

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 35/65 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+  I+   GLS+ D+ + +      I ++ V GE I++  F TF V ++  R G
Sbjct: 1  MNKSELIDQIAANSGLSKADAKKALNATTEVIKNALVEGEKIQLVGFGTFSVNERPEREG 60

Query: 65 RNLQT 69
           N  T
Sbjct: 61 INPST 65


>gi|325270174|ref|ZP_08136781.1| DNA-binding protein HU [Prevotella multiformis DSM 16608]
 gi|324987475|gb|EGC19451.1| DNA-binding protein HU [Prevotella multiformis DSM 16608]
          Length = 92

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63
          +T++D++  I+   G+++KD +  V +    I  S   + E + +  F +F VK +  + 
Sbjct: 1  MTKADIINEIATSTGIAKKDVSAVVESFMEAIKGSLLEKKENVYLRGFGSFIVKHRAEKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN+  N  + I       FK + +  +
Sbjct: 61 ARNISKNTTITIPAHNFPSFKPAKVFIE 88


>gi|160882775|ref|ZP_02063778.1| hypothetical protein BACOVA_00736 [Bacteroides ovatus ATCC 8483]
 gi|293373985|ref|ZP_06620326.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
 gi|299145603|ref|ZP_07038671.1| HimA protein [Bacteroides sp. 3_1_23]
 gi|156111799|gb|EDO13544.1| hypothetical protein BACOVA_00736 [Bacteroides ovatus ATCC 8483]
 gi|292631061|gb|EFF49698.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
 gi|298516094|gb|EFI39975.1| HimA protein [Bacteroides sp. 3_1_23]
          Length = 92

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 45/89 (50%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+   +    +++  G + KD++  + +L + +      G  I I  F +F VK+K  R+
Sbjct: 2  TMNNKEFTSELAERLGYTIKDTSELMNSLLSSMTQELEEGNVIAIQGFGSFEVKKKAERI 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
            N  + Q + + P+ V+ ++ S+ LK +
Sbjct: 62 SINPASKQRMLVPPKLVLSYRPSNTLKDK 90


>gi|332826704|gb|EGJ99526.1| hypothetical protein HMPREF9455_04122 [Dysgonomonas gadei ATCC
          BAA-286]
          Length = 91

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 41/85 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +    + V +  + + DS  + E + +  F +F VK +  +  
Sbjct: 1  MTKADIVNEIAKNTGIDKATVLKTVESFMDVVKDSLSKNENVYLRGFGSFIVKTRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  + I    +  FK +   
Sbjct: 61 RNISKNTTIIIPAHSIPAFKPAKTF 85


>gi|260592146|ref|ZP_05857604.1| DNA-binding protein HU [Prevotella veroralis F0319]
 gi|260535780|gb|EEX18397.1| DNA-binding protein HU [Prevotella veroralis F0319]
          Length = 93

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63
          +T++D++  I+   G+++KD +  V +  + I DS + + E + +  F +F +K +  + 
Sbjct: 1  MTKADIINEIATSTGIAKKDVSAVVESFMDSIKDSLLGKKENVYLRGFGSFIIKHRAEKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN+  N  + I       FK +    +
Sbjct: 61 ARNISKNTTITIPAHDFPSFKPAKTFIE 88


>gi|256419934|ref|YP_003120587.1| histone family protein DNA-binding protein [Chitinophaga pinensis
          DSM 2588]
 gi|256034842|gb|ACU58386.1| histone family protein DNA-binding protein [Chitinophaga pinensis
          DSM 2588]
          Length = 89

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 38/67 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++K+ G+++  +   + +    + D+  +G  + +  F TF V ++ +R G
Sbjct: 1  MNKAELIDKLAKDAGITKTQANEALDSFTKAVADTLKKGGKVTLVGFGTFSVSKRAARNG 60

Query: 65 RNLQTNQ 71
          RN QT Q
Sbjct: 61 RNPQTGQ 67


>gi|313676682|ref|YP_004054678.1| histone family protein DNA-binding protein [Marivirga tractuosa
          DSM 4126]
 gi|312943380|gb|ADR22570.1| histone family protein DNA-binding protein [Marivirga tractuosa
          DSM 4126]
          Length = 99

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 50/94 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D++  IS++ G+ + D T  V   F+ + DS   GE I +  F +F  K++  ++ 
Sbjct: 1  MTKADVISEISEKTGIDKADVTATVEAFFSVVKDSMADGENIYVRGFGSFVNKKRAKKIA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN+  N  + ID   V  FK S +  ++I    +
Sbjct: 61 RNISKNTAIVIDEHYVPSFKPSKVFVEKIKSSNK 94


>gi|317154852|ref|YP_004122900.1| histone family protein DNA-binding protein [Desulfovibrio
          aespoeensis Aspo-2]
 gi|316945103|gb|ADU64154.1| histone family protein DNA-binding protein [Desulfovibrio
          aespoeensis Aspo-2]
          Length = 95

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS T+T++ +V  I +    +R +    V T+   +  S  +  A+ +S F  F    K 
Sbjct: 1  MS-TLTKAGIVDYIYERTESNRAEIKDLVETILEIMKTSIKKDHALLVSGFGKFEAYDKR 59

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +R GRN QT+Q + + PR+VVVF+ S   +  + 
Sbjct: 60 ARKGRNPQTSQTITLPPRKVVVFRLSRKFRSELN 93


>gi|124515663|gb|EAY57172.1| putative integration host factor, beta-subunit [Leptospirillum
          rubarum]
 gi|206602281|gb|EDZ38763.1| Putative integration host factor, beta-subunit [Leptospirillum
          sp. Group II '5-way CG']
          Length = 98

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TR DL+K I+++  G+S  DS   V  LF  +    + GE+++I  F  F +  +  R+
Sbjct: 1  MTRDDLIKRIAEKNAGISLSDSRELVLDLFESMKSVILEGESLEIRRFGVFEIHHRKPRI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           RN +T ++V +  R+ ++F+   ILK R+ +  R
Sbjct: 61 ARNPRTGEKVSVGERKSLIFRPGKILKLRMKNLTR 95


>gi|115372447|ref|ZP_01459756.1| non-specific DNA-binding protein [Stigmatella aurantiaca DW4/3-1]
 gi|310819508|ref|YP_003951866.1| DNA-binding protein HU [Stigmatella aurantiaca DW4/3-1]
 gi|115370660|gb|EAU69586.1| non-specific DNA-binding protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392580|gb|ADO70039.1| DNA-binding protein HU [Stigmatella aurantiaca DW4/3-1]
          Length = 89

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV+ ++ +  L++K +   +  +F+ I  +  R        F T+ V+ + +R  
Sbjct: 1  MTKAELVEVVAAQSRLTKKSAAEILDIVFSNIGKAVKRDARFSYPGFGTWSVRSRKARKI 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QTN+ +K+   + + F+ +  LK  +
Sbjct: 61 RNPQTNEMMKLKASKTIGFRPAKELKNSL 89


>gi|94971969|ref|YP_594009.1| histone-like DNA-binding protein [Deinococcus geothermalis DSM
           11300]
 gi|94554020|gb|ABF43935.1| histone-like protein DNA-binding protein [Deinococcus geothermalis
           DSM 11300]
          Length = 149

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 46/87 (52%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
           ++ LV  ++ + GL++K S   V+ +   + D+  +G+++ +    T  VK   +R G  
Sbjct: 53  KTQLVDMVADKTGLTKKQSEEAVSAMLGVVVDAIKQGKSVGLPGLGTLSVKATAARTGVR 112

Query: 67  LQTNQEVKIDPRRVVVFKASSILKKRI 93
             T++ ++I   + V FK +S LK  +
Sbjct: 113 PGTSERIQIPAGKKVAFKVASTLKSSL 139


>gi|332704460|ref|ZP_08424548.1| histone family protein DNA-binding protein [Desulfovibrio
          africanus str. Walvis Bay]
 gi|332554609|gb|EGJ51653.1| histone family protein DNA-binding protein [Desulfovibrio
          africanus str. Walvis Bay]
          Length = 185

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLS-RKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +TR +++ ++     L  +  + + +  +   + +    G ++ I  F +FHVK    R 
Sbjct: 1  MTRQEIIDTLQTAADLPDKTTAGKALDAILESMTEELASGGSVLIRGFGSFHVKIVAERQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GR+ +TNQ + I   R V F+    L++ +
Sbjct: 61 GRDFKTNQPIHIPAYRTVKFEPGVELRQFV 90


>gi|226358227|ref|YP_002787966.1| DNA-binding protein HU (Histone-like protein) [Deinococcus deserti
           VCD115]
 gi|226319870|gb|ACO47864.1| putative DNA-binding protein HU (Histone-like protein) [Deinococcus
           deserti VCD115]
          Length = 125

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 48/89 (53%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S  + ++ LV+ ++   GL++K S   V+T+   I  +   G+++ +    T  VKQ  +
Sbjct: 34  SNKVAKTQLVEMVADRTGLTKKQSEEAVSTMLESIVGALREGKSVGMPGLGTLSVKQTAA 93

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
           R G    T+++++I   + V FK +S LK
Sbjct: 94  RTGVRPGTSEKIQIPAGKKVAFKVASTLK 122


>gi|328552929|gb|AEB23421.1| putative HU-related DNA-binding protein; phage SPbeta [Bacillus
          amyloliquefaciens TA208]
          Length = 91

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 48/72 (66%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++   +++++ G+++K++T  V  +FN I ++  +GE+IKI    TF V+++ +R G
Sbjct: 1  MNKTEFAGAVAEKLGVTKKEATPKVEAVFNVIVETLTKGESIKIPGVGTFEVRERAARKG 60

Query: 65 RNLQTNQEVKID 76
          RN ++ +E+ I 
Sbjct: 61 RNPKSGEEIDIP 72


>gi|282877163|ref|ZP_06286001.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310]
 gi|281300655|gb|EFA92986.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310]
          Length = 92

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63
          +T++D++  IS   GL +K+    V    + + DS   + E + +  F +F +K + ++ 
Sbjct: 1  MTKADIINEISMSTGLQKKEVAAVVECFMSTVKDSLLEKRENVYLRGFGSFIIKHRAAKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSIL 89
           RN+Q N  + ID   +  FK S   
Sbjct: 61 ARNIQKNTTITIDAHDLPSFKPSKSF 86


>gi|260910484|ref|ZP_05917153.1| DNA-binding protein HU [Prevotella sp. oral taxon 472 str. F0295]
 gi|260635430|gb|EEX53451.1| DNA-binding protein HU [Prevotella sp. oral taxon 472 str. F0295]
          Length = 90

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 40/71 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  I+   GLS+ DS + +      I  + V+G+ +++  F TF V ++ + VG
Sbjct: 1  MNKTDLIDKIAAGSGLSKADSKKALDATVAAIKGALVKGDKVQLVGFGTFSVNERPAHVG 60

Query: 65 RNLQTNQEVKI 75
           N  T Q++ I
Sbjct: 61 VNPATKQKITI 71


>gi|114799727|ref|YP_761164.1| DNA-binding protein HU [Hyphomonas neptunium ATCC 15444]
 gi|114739901|gb|ABI78026.1| DNA-binding protein HU [Hyphomonas neptunium ATCC 15444]
          Length = 91

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T   L   +S+   + +K +   V+   + +     +G+ ++I+      V++  +R G
Sbjct: 2  LTLKHLAAELSEAHEMPKKQAEAVVSDFIDRMGGHLKKGKKLRIAGLGILQVRKSPARKG 61

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T +E+KI   + V F+ S  LK+R++
Sbjct: 62 RNPATGEEIKIKASKKVAFRPSKDLKERVL 91


>gi|300727913|ref|ZP_07061291.1| DNA-binding protein HU [Prevotella bryantii B14]
 gi|299774755|gb|EFI71369.1| DNA-binding protein HU [Prevotella bryantii B14]
          Length = 94

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63
          +T++D++  +S++ G+S+K+ +  V +  + +  S   R E + +  F +F +K +  + 
Sbjct: 1  MTKADIIAEVSEQTGMSKKEVSAVVESFMDCVKLSLLERKENVYLRGFGSFVIKHRAEKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSIL 89
           RN+  N  + I    +  FK +   
Sbjct: 61 ARNISKNTTITIAAHDLPSFKPAKNF 86


>gi|325300776|ref|YP_004260692.1| histone family protein DNA-binding protein [Bacteroides
          salanitronis DSM 18170]
 gi|324320329|gb|ADY38219.1| histone family protein DNA-binding protein [Bacteroides
          salanitronis DSM 18170]
          Length = 176

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV  I+ + G+ +KD    + +L  E+ +S  +G+ I +  F +F +K +  +  
Sbjct: 1  MTKAELVNIIAIKTGIDKKDVMAIMESLMAEVKNSLGKGKHIYLRGFGSFIIKHRAEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN+  N  V +    +  FK +      +  
Sbjct: 61 RNISQNTTVMVPAHNIPAFKPAMEFVNAVSK 91


>gi|308273400|emb|CBX30002.1| Integration host factor subunit alpha [uncultured
          Desulfobacterium sp.]
          Length = 94

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++D+V  + +  G ++K S   + +L   I ++   G+ + IS F  F VK+K  R 
Sbjct: 2  ALTKNDIVARVHE-LGFTKKKSVDIIESLLMIIKNNLENGDDVLISGFGKFCVKKKSQRR 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN  T  ++ +  RRVV FK S  L+ +I  +
Sbjct: 61 GRNPATGSDLILRQRRVVTFKCSGKLRDKINKN 93


>gi|251771308|gb|EES51889.1| putative integration host factor, alpha subunit HimA like protein
          [Leptospirillum ferrodiazotrophum]
          Length = 104

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 5  ITRSDLVKSISKE---FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + R+D+V+         GL RK     +  +  EI +S + GE++K++ F TF V+++  
Sbjct: 1  MNRTDIVEYTRNNGGGIGLPRKAVREALDFVIEEITNSVLAGESVKLTGFGTFEVRKRED 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKA 85
          R+GRN +T + + I   +VVVF+ 
Sbjct: 61 RLGRNPKTGEPLLIKSHKVVVFRP 84


>gi|119774748|ref|YP_927488.1| HU family DNA-binding protein [Shewanella amazonensis SB2B]
 gi|119767248|gb|ABL99818.1| DNA-binding protein, HU family [Shewanella amazonensis SB2B]
          Length = 91

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 43/91 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L K I+   G+S+ ++ R +  +   I  +   GE + +  F TF ++    R  
Sbjct: 1  MNKATLTKFIANTTGVSQPEAKRQLEQILASIRQALEEGETLYLPQFGTFELRYHLPRQV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + +++       FK +  LK+ I  
Sbjct: 61 RNPKTGELMEVAGFNQPSFKPAPALKQLIAG 91


>gi|317484392|ref|ZP_07943308.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
 gi|316924344|gb|EFV45514.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
          Length = 97

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 50/96 (52%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSKT+T++D+ KSI  +  + ++ + + +  +   +  +    + + +S F  F    K 
Sbjct: 1  MSKTVTKADIAKSICAQSEMKQQHAKKVLDAMLGIMKKALKEEKEMLLSGFGKFEAFTKK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          +R GRN QT +E+ +D   V+ F+ S   K  +  +
Sbjct: 61 NRKGRNPQTGEEITLDSHDVLAFRISRKFKAAMNSE 96


>gi|225847908|ref|YP_002728071.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643424|gb|ACN98474.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 91

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 54/91 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +L+ +++++ GL +  + + V      + ++  +GE + I  F  F+++++  R G
Sbjct: 1  MTKKELISAVAQKAGLKKAAAEKAVNAAIETVVEAISKGERVAIPGFGIFNIRERKERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T +E+KI  R+VV F A+  LK+ +  
Sbjct: 61 RNPRTGKEIKIPARKVVAFTAAKALKEAVNK 91


>gi|304382113|ref|ZP_07364624.1| DNA-binding protein HU [Prevotella marshii DSM 16973]
 gi|304336711|gb|EFM02936.1| DNA-binding protein HU [Prevotella marshii DSM 16973]
          Length = 99

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 5/103 (4%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63
           +T++D++  I+   GL +KD +  V      I  S + + E + +  F +F VK +  + 
Sbjct: 1   MTKADIINEIAATTGLPKKDVSTTVEAFMETIKQSLLDKRENVYLRGFGSFIVKHRAEKT 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
            RN+  N  + I       FK +       +  M+G +  ++D
Sbjct: 61  ARNISKNTTITIAAHDFPGFKPAKSF----IQKMKGEEITEND 99


>gi|218264143|ref|ZP_03478035.1| hypothetical protein PRABACTJOHN_03725 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222261|gb|EEC94911.1| hypothetical protein PRABACTJOHN_03725 [Parabacteroides johnsonii
           DSM 18315]
          Length = 99

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 41/97 (42%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++++V  I+K+ G  ++     V      +  + + G  + +  F +F +K +  +V 
Sbjct: 1   MTKAEIVARIAKQTGAEKEVVMNVVEAFMESVKGAMIEGNEVFLRGFGSFIIKHRAEKVA 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           RN+  N  + I    +  FK S      +       K
Sbjct: 61  RNISQNTTIVIPAHSIPAFKPSKAFADMVNGKNNKDK 97


>gi|190571140|ref|YP_001975498.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
          quinquefasciatus Pel]
 gi|213018544|ref|ZP_03334352.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
          quinquefasciatus JHB]
 gi|190357412|emb|CAQ54846.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
          quinquefasciatus Pel]
 gi|212995495|gb|EEB56135.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
          quinquefasciatus JHB]
          Length = 99

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 56/92 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T++ + + I++E GLS++DS   +  + +EI  S  +   +KISSF TF VK K  R 
Sbjct: 7  TVTKATIAECINQEIGLSKEDSIAIIDDILDEIKTSLAKDGIVKISSFGTFLVKNKKERP 66

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          G   +T++ V I  R+ + F+ S ++KK I +
Sbjct: 67 GNIPKTSERVVIKARKSISFRPSKMMKKLINN 98


>gi|328541581|ref|YP_004301691.1| Histone-like DNA-binding protein [Polymorphum gilvum SL003B-26A1]
 gi|326415720|gb|ADZ72782.1| Histone-like DNA-binding protein [Polymorphum gilvum SL003B-26A1]
          Length = 92

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 42/90 (46%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+ E  L++  +   V ++FN+I ++A  G    I SF  F VK    R GR
Sbjct: 3  TTNEIADKIASEQNLTKTQAKAIVESVFNQIAEAAKAGAETSIPSFGKFKVKDTPEREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N  T   +KI   + + F     +K  +  
Sbjct: 63 NPATGATIKIAASKKLTFTPGKAVKDALNG 92


>gi|251773075|gb|EES53631.1| histone family protein DNA-binding protein [Leptospirillum
          ferrodiazotrophum]
          Length = 84

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSRVGRNLQTN 70
            IS+   +++  +   +      I  S  + GE + +  F TF   ++ +R GRN +T 
Sbjct: 1  DKISQAAKINKTQANDALNAAVEAIKKSLKKDGERVTLPGFGTFSTAKRKARTGRNPRTG 60

Query: 71 QEVKIDPRRVVVFKASSILKKRIM 94
          Q +KI   RV  F A    K  + 
Sbjct: 61 QAIKIPAMRVPKFTAGKAFKAAVK 84


>gi|258512944|ref|YP_003189201.1| histone-like DNA-binding protein HU [Acetobacter pasteurianus IFO
          3283-01]
 gi|256634847|dbj|BAI00822.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-01]
 gi|256637902|dbj|BAI03870.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-03]
 gi|256640956|dbj|BAI06917.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-07]
 gi|256644011|dbj|BAI09965.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-22]
 gi|256647066|dbj|BAI13013.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-26]
 gi|256650119|dbj|BAI16059.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-32]
 gi|256653110|dbj|BAI19043.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-01-42C]
 gi|256656163|dbj|BAI22089.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-12]
          Length = 92

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 43/89 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   DL++ I     +S+KD+   + T+F  I ++A  G+   I  F  F V+Q   R G
Sbjct: 1  MNNHDLIERIVATTDISKKDAKTALDTVFAAIIEAAAEGDDTAIPGFGKFVVRQTSERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN  T  E+ I   R + F  +  +K  +
Sbjct: 61 RNPHTGAELVIPASRKLAFTPAKAVKDAL 89


>gi|311745198|ref|ZP_07718983.1| DNA-binding protein HU [Algoriphagus sp. PR1]
 gi|126577721|gb|EAZ81941.1| DNA-binding protein HU [Algoriphagus sp. PR1]
          Length = 102

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 53/102 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+++++  IS + G+ + D T+ V   F  + DS   GE I +  F +F  K++  ++ 
Sbjct: 1   MTKAEVITKISDKTGIQKDDVTQTVEAFFKVVKDSMSEGENIYVRGFGSFINKKRAKKIA 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           RN+  N  + ID   +  FK S +  ++I +  + ++    D
Sbjct: 61  RNISKNTAIVIDEHYIPAFKPSKVFVEKIKNSKKIKELAPQD 102


>gi|291302449|ref|YP_003513727.1| histone family protein DNA-binding protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571669|gb|ADD44634.1| histone family protein DNA-binding protein [Stackebrandtia
           nassauensis DSM 44728]
          Length = 185

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 49/99 (49%), Gaps = 1/99 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +++ + ++ +  G  RK + + +  +  EI  +  +GE +  + F  F  +Q+ +R+ 
Sbjct: 1   MNKAEFIDALVEHLG-DRKTALKALDAMLEEIQRAVSKGEKVSFAGFGVFEKRQRAARMA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           RN +T + V++    V  F+     K+ +  + +  K +
Sbjct: 60  RNPRTGEAVRVKKTVVPAFRPGQGFKELVTGEKKMPKRS 98


>gi|313184943|gb|ADR50036.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184945|gb|ADR50037.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 6/99 (6%)

Query: 3   KTITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
            T+T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+
Sbjct: 7   PTVTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVR 66

Query: 58  QKGSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           ++  R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 67  KRKGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|304372872|ref|YP_003856081.1| Histone-like DNA-binding protein [Mycoplasma hyorhinis HUB-1]
 gi|304309063|gb|ADM21543.1| Histone-like DNA-binding protein [Mycoplasma hyorhinis HUB-1]
 gi|330723543|gb|AEC45913.1| nucleoid DNA-binding protein [Mycoplasma hyorhinis MCLD]
          Length = 90

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 40/90 (44%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  I  E  L+ KD+   + + F+ +     RG+ + I+ F TF    K     
Sbjct: 1  MNKKELLDLIVDETQLTHKDTEAVLNSFFDIVTSQIKRGDKVVIAGFGTFQGVFKEQSTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T  EV I  + V  FK S  LK  + 
Sbjct: 61 INPITKSEVNIPAKMVAKFKPSKNLKDMLK 90


>gi|325278965|ref|YP_004251507.1| histone family protein DNA-binding protein [Odoribacter
          splanchnicus DSM 20712]
 gi|324310774|gb|ADY31327.1| histone family protein DNA-binding protein [Odoribacter
          splanchnicus DSM 20712]
          Length = 95

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 45/94 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  IS+  G+ +      V      I +S V G+ + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEISRTTGIEKVAVQATVEAFMESIKNSVVEGKNVYLRGFGSFVVKKRAEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN+  N  +KI    +  FK S      +  +++
Sbjct: 61 RNISKNVTIKIPEHFIPSFKPSKSFVNDVKGNVK 94


>gi|149199234|ref|ZP_01876272.1| probable DNA-binding protein HU [Lentisphaera araneosa HTCC2155]
 gi|149137659|gb|EDM26074.1| probable DNA-binding protein HU [Lentisphaera araneosa HTCC2155]
          Length = 100

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ DLV  I+ E  L++++    V    + I +    G  +++ +F  F +K +  R+G
Sbjct: 1  MTKRDLVVRIADESKLNQQEVMNVVQKTLDYITNELAAGRNVELRNFGVFELKVRKQRIG 60

Query: 65 RNLQTNQ-EVKIDPRRVVVFKASSILKKRI 93
          RN    + EV I  R VV FK+  ++K+++
Sbjct: 61 RNPNKPENEVPIPERVVVKFKSGKVMKEKV 90


>gi|257463524|ref|ZP_05627917.1| DNA-binding protein HU [Fusobacterium sp. D12]
 gi|317061080|ref|ZP_07925565.1| DNA-binding protein HU [Fusobacterium sp. D12]
 gi|313686756|gb|EFS23591.1| DNA-binding protein HU [Fusobacterium sp. D12]
          Length = 105

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + + D +   +K   L ++ ++ + V    N + ++ V G+ +    F  F    + +R 
Sbjct: 1  MNKKDFIALFAKNAELKTKTEAEKLVAAFLNTVEETLVAGDGVAFMGFGKFETSVREART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            N +T +++ +  ++VV FKA   L +++ 
Sbjct: 61 CVNPRTKEKMDVPAKKVVRFKAGKALAEKVN 91


>gi|323699317|ref|ZP_08111229.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          ND132]
 gi|323459249|gb|EGB15114.1| histone family protein DNA-binding protein [Desulfovibrio
          desulfuricans ND132]
          Length = 94

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS T+T++ +V  I +    +R +    V  +   +  S  +  A+ IS F  F    K 
Sbjct: 1  MS-TLTKAGIVDYIYERTDKNRAEIKDLVEIILEIMKKSIKKDHALLISGFGKFEAYDKR 59

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +R GRN QT Q + + PR+VVVF+ S   +  + 
Sbjct: 60 ARKGRNPQTTQTITLPPRKVVVFRLSRKFRAELN 93


>gi|332670429|ref|YP_004453437.1| histone family protein DNA-binding protein [Cellulomonas fimi
          ATCC 484]
 gi|332339467|gb|AEE46050.1| histone family protein DNA-binding protein [Cellulomonas fimi
          ATCC 484]
          Length = 93

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 47/92 (51%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R++LV++++ + G +  ++ + +      + +    GE++ I  F      ++ +R 
Sbjct: 2  SVNRTELVQAVAAKAGTANAEADKVLKAFQEVLVEQLAAGESVTIPGFLAVSRAERSART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          G N QT ++++I     V   A S+LK+ +  
Sbjct: 62 GINPQTGEKLEIPAGYRVKLTAGSVLKRAVQG 93


>gi|108757022|ref|YP_629691.1| DNA-binding protein HU [Myxococcus xanthus DK 1622]
 gi|108460902|gb|ABF86087.1| DNA-binding protein HU [Myxococcus xanthus DK 1622]
          Length = 89

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LV+ ++ +  L++K + + +  +F  I  +  +        F T+ V+ + +R  
Sbjct: 1  MTKAELVEVVAAQTRLTKKSAAQILDIVFTNIGKAVKKDARFSYPGFGTWSVRSRKARKI 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN QTN+ +K+   + + F+ +  LK  +
Sbjct: 61 RNPQTNEMMKLKASKTIGFRPAKELKNSL 89


>gi|160886673|ref|ZP_02067676.1| hypothetical protein BACOVA_04685 [Bacteroides ovatus ATCC 8483]
 gi|298383516|ref|ZP_06993077.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
 gi|156107084|gb|EDO08829.1| hypothetical protein BACOVA_04685 [Bacteroides ovatus ATCC 8483]
 gi|298263120|gb|EFI05983.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
          Length = 93

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 45/92 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++V  IS++ G+ +      V +    + +S V G  + +  F +F +K++  +  
Sbjct: 1  MTKAEIVAQISRQSGIEKTVVMTVVESFMENVKESMVAGNEVFLRGFGSFVIKRRAEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN+  N  +KI    +  FK +      + ++
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKAFLNAVKEN 92


>gi|15639243|ref|NP_218692.1| DNA-binding protein II [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025485|ref|YP_001933257.1| DNA-binding protein II [Treponema pallidum subsp. pallidum SS14]
 gi|14194594|sp|O83278|DBH_TREPA RecName: Full=DNA-binding protein HU
 gi|3322519|gb|AAC65236.1| DNA-binding protein II [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189018060|gb|ACD70678.1| DNA-binding protein II [Treponema pallidum subsp. pallidum SS14]
          Length = 105

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           TRS +V ++  E  LSR+   R V +  + +  +  RGE +++  F  F  + + + VG+
Sbjct: 7   TRSFVVDALCDEVDLSRRHVARVVDSFVSVVTAALERGETVELRDFGVFESRVRKASVGK 66

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           +++T + V I    VVVF+ S  LK  +     G 
Sbjct: 67  SIKTGEVVSIPSHCVVVFRPSKRLKSAVRGYRSGE 101


>gi|198283418|ref|YP_002219739.1| histone family protein DNA-binding protein [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218667634|ref|YP_002426011.1| DNA-binding protein HU family protein [Acidithiobacillus
          ferrooxidans ATCC 23270]
 gi|198247939|gb|ACH83532.1| histone family protein DNA-binding protein [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218519847|gb|ACK80433.1| DNA-binding protein HU family protein [Acidithiobacillus
          ferrooxidans ATCC 23270]
          Length = 91

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 41/90 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + + V ++++   +S+ D+ +      + +         I    F TF V +K +R G
Sbjct: 1  MNKLEFVAALAQHGAMSKVDAEKMFQVFRHTLETELPTAGKIVFPGFCTFEVAEKPARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T QE+ I  ++ + FKA      ++ 
Sbjct: 61 RNPATGQEIDIPAKKSIKFKAGKEFADKVN 90


>gi|58584918|ref|YP_198491.1| nucleoid DNA-binding protein [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|58419234|gb|AAW71249.1| Bacterial nucleoid DNA-binding protein, HupA family [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 102

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 57/92 (61%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T++ + + I++E GLS++DS   +  + +EI  S V+   +KISSF TF +K+K  R 
Sbjct: 10  TVTKATIAEDINQEIGLSKEDSAAIIDDILDEIKASLVKDGIVKISSFGTFLIKKKKERP 69

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           G    T+++V I  R  V F+ S ++KK I +
Sbjct: 70  GNVPNTSKKVVIQARNSVSFRPSKVIKKLINN 101


>gi|269469081|gb|EEZ80634.1| histone family protein DNA-binding [uncultured SUP05 cluster
          bacterium]
          Length = 92

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+ S+S    LS+ D+   V  +   +      GE  +I  F  F+ K + +R+G
Sbjct: 1  MKKTDLILSLSNNTDLSKTDAKVSVEVIIEALTKGIASGEGAEIRGFGGFYKKHRKARLG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N +T++  ++  + V  FK    L++ + 
Sbjct: 61 INPKTSERTQVSEKFVPFFKPGKSLREVVN 90


>gi|91205964|ref|YP_538319.1| DNA-binding protein HU [Rickettsia bellii RML369-C]
 gi|157826672|ref|YP_001495736.1| DNA-binding protein HU [Rickettsia bellii OSU 85-389]
 gi|91069508|gb|ABE05230.1| DNA-binding protein HU [Rickettsia bellii RML369-C]
 gi|157801976|gb|ABV78699.1| DNA-binding protein HU [Rickettsia bellii OSU 85-389]
          Length = 108

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 48/102 (47%), Gaps = 9/102 (8%)

Query: 3   KTITRSDLVKSISKEF---------GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53
           K + +++ +  +++             ++ D+ + +  +   I  +     ++ I+ F +
Sbjct: 6   KKMNKTEFIAFMTEHGHHHKHQGHKSFTKADAEKALNWVLESIISATKHQHSVNITGFGS 65

Query: 54  FHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           F ++ + SR GRN +T  ++ I   +  VFKA S LK+   +
Sbjct: 66  FGIQSRKSREGRNPKTGAKMTIPAYKQPVFKAGSKLKEACNN 107


>gi|163785054|ref|ZP_02179777.1| Histone-like DNA-binding protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879681|gb|EDP73462.1| Histone-like DNA-binding protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 97

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 5/95 (5%)

Query: 5  ITRSDLVKSI--SKEFGLSRKDSTRFVTTLFNEICDSAVRG---EAIKISSFATFHVKQK 59
          +T+ D+V+ I  +K+  L++KD    V  LF+ I +    G   + I+IS F TF VK++
Sbjct: 1  MTKIDIVEWILDNKDINLTKKDIKIIVDELFSLIENELKNGQDGKKIQISGFGTFFVKKR 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           ++VGRN +TN+E  +  R  V FK    L   I 
Sbjct: 61 KAKVGRNPRTNEEKIVPERLGVSFKPGKKLINEIN 95


>gi|189463459|ref|ZP_03012244.1| hypothetical protein BACCOP_04178 [Bacteroides coprocola DSM
          17136]
 gi|265753811|ref|ZP_06089166.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|189429888|gb|EDU98872.1| hypothetical protein BACCOP_04178 [Bacteroides coprocola DSM
          17136]
 gi|263235525|gb|EEZ21049.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 93

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 45/92 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++V  I+++ G+ ++     V      + D+ + G  + +  F +F +KQ+  +V 
Sbjct: 1  MTKAEIVSRIAQQTGIEKEVVMTVVEAFMENVKDAMIAGNEVFLRGFGSFIIKQRAEKVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN+  N  + I    +  FK + +    + + 
Sbjct: 61 RNISKNTTIVIPAHSIPAFKPAKVFLNAVKEG 92


>gi|154490934|ref|ZP_02030875.1| hypothetical protein PARMER_00851 [Parabacteroides merdae ATCC
          43184]
 gi|154088682|gb|EDN87726.1| hypothetical protein PARMER_00851 [Parabacteroides merdae ATCC
          43184]
          Length = 90

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 43/90 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  ISK  G+ ++     V +  + +  S  +GE + +  F +F +K++  +  
Sbjct: 1  MTKADIVSEISKSTGIDKQTVLNSVESFMDIVKSSLSQGENVYLRGFGSFVIKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN+  N  + I    +  FK +      + 
Sbjct: 61 RNISKNTTIIIPEHNIPSFKPAKTFLNEVK 90


>gi|148274118|ref|YP_001223679.1| putative DNA-binding protein HU [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|170783357|ref|YP_001711691.1| DNA-binding protein HU [Clavibacter michiganensis subsp.
          sepedonicus]
 gi|147832048|emb|CAN03021.1| putative DNA-binding protein Hu [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|169157927|emb|CAQ03137.1| DNA-binding protein HU [Clavibacter michiganensis subsp.
          sepedonicus]
          Length = 95

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 45/92 (48%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K++ R++LV +++ E G S+      +  LF+ +  +   G  + I  +  F    + +R
Sbjct: 4  KSLNRTELVAAVAAESGQSQAAVNGVLDALFSTVATNVADGVKVTIPGWVAFEQTARAAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT + ++I   + V   A S LK  + 
Sbjct: 64 TGRNPQTGEPLEIKASKGVKVSAGSKLKAAVK 95


>gi|116326536|ref|YP_796459.1| nucleoid DNA-binding protein [Lactococcus lactis subsp. cremoris
          SK11]
 gi|134093293|ref|YP_001098369.1| hypothetical protein pDB0R0p15 [Lactococcus lactis subsp. lactis
          bv. diacetylactis]
 gi|116108903|gb|ABJ74028.1| nucleoid DNA-binding protein [Lactococcus lactis subsp. cremoris
          SK11]
 gi|133712501|gb|ABO37108.1| unknown [Lactococcus lactis subsp. lactis bv. diacetylactis]
          Length = 103

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 7/96 (7%)

Query: 5  ITRSDLVKSISKEFG-------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          + + +L K+IS++ G       L+  +S + V  +   I +  V+   I++  F TF  K
Sbjct: 2  VNKKELAKAISEKSGNIMKKHPLTIYESKKVVDAITASITELLVQDGKIQMIDFGTFEKK 61

Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           + SR G N Q  + ++I  + V  FKA   LK+ +
Sbjct: 62 TRASRGGFNPQVGERIQIPEKTVPTFKAGKGLKEAV 97


>gi|313185127|gb|ADR50128.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 6/99 (6%)

Query: 3   KTITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
            TIT+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+
Sbjct: 7   PTITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVR 66

Query: 58  QKGSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           ++  R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 67  KRKGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|53712845|ref|YP_098837.1| DNA-binding protein HU [Bacteroides fragilis YCH46]
 gi|60681069|ref|YP_211213.1| putative histone-like DNA-binding protein HU1 [Bacteroides
          fragilis NCTC 9343]
 gi|253563170|ref|ZP_04840627.1| DNA-binding protein HU [Bacteroides sp. 3_2_5]
 gi|255008357|ref|ZP_05280483.1| putative histone-like DNA-binding protein HU1 [Bacteroides
          fragilis 3_1_12]
 gi|265762946|ref|ZP_06091514.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16]
 gi|313146081|ref|ZP_07808274.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
 gi|52215710|dbj|BAD48303.1| DNA-binding protein HU [Bacteroides fragilis YCH46]
 gi|60492503|emb|CAH07273.1| putative histone-like DNA-binding protein HU1 [Bacteroides
          fragilis NCTC 9343]
 gi|251946946|gb|EES87228.1| DNA-binding protein HU [Bacteroides sp. 3_2_5]
 gi|263255554|gb|EEZ26900.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16]
 gi|301162554|emb|CBW22101.1| putative histone-like DNA-binding protein HU1 [Bacteroides
          fragilis 638R]
 gi|313134848|gb|EFR52208.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
          Length = 91

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 40/85 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +      V    + + DS  + E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEIAKNTGVDKVTVLTTVEAFMDAVKDSLSKDENVYLRGFGSFVVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  + I    +  FK +   
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85


>gi|327312706|ref|YP_004328143.1| DNA-binding protein HU-beta [Prevotella denticola F0289]
 gi|326945003|gb|AEA20888.1| DNA-binding protein HU-beta [Prevotella denticola F0289]
          Length = 91

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 40/71 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+   GLS+ D+ + +      I  + V G+ +++  F TF V ++ +  G
Sbjct: 1  MNKTELIEKIAAGAGLSKADAKKALDATTEAIKGALVAGDKVQLVGFGTFAVNERPAHEG 60

Query: 65 RNLQTNQEVKI 75
           N  T Q+++I
Sbjct: 61 INPATKQKIQI 71


>gi|255327422|ref|ZP_05368496.1| HU_IHF family transcriptional regulator [Rothia mucilaginosa ATCC
          25296]
 gi|255295702|gb|EET75045.1| HU_IHF family transcriptional regulator [Rothia mucilaginosa ATCC
          25296]
          Length = 94

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K   R++LV  ++++ G S+      +  +F     S  +GE I I  +       + 
Sbjct: 1  MAK--NRTELVAEVAEKSGKSQATVNAVLDAVFQVFESSVSKGEKITIPGWMAIERTDRA 58

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +R GRN QT + ++I     V   A S LK  +  
Sbjct: 59 ARTGRNPQTGETIQIPAGHGVKLTAGSKLKAAVAK 93


>gi|170741538|ref|YP_001770193.1| histone family protein DNA-binding protein [Methylobacterium sp.
          4-46]
 gi|168195812|gb|ACA17759.1| histone family protein DNA-binding protein [Methylobacterium sp.
          4-46]
          Length = 102

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + R+ L++ +++    L    +   V  + + I ++ + G+ I++  F       + +R 
Sbjct: 1  MLRAQLIQRVAELNPHLPYSQADAVVRAILDRITEALMEGDQIELRGFGALKTTAREARR 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN +T + V++  +R V F+AS  +  R+ 
Sbjct: 61 SRNPRTGEAVEVPAKRDVAFRASREMNGRLN 91


>gi|167753149|ref|ZP_02425276.1| hypothetical protein ALIPUT_01420 [Alistipes putredinis DSM
          17216]
 gi|167659463|gb|EDS03593.1| hypothetical protein ALIPUT_01420 [Alistipes putredinis DSM
          17216]
          Length = 90

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 39/90 (43%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G  +      V      I  S  +   + +  F +F VK++  +V 
Sbjct: 1  MTKADIVSEIAKSTGAEKVQVQAIVEAFMESIKGSLAQNNNVYLRGFGSFIVKKRAKKVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN+  N  + I    +  FK +     ++ 
Sbjct: 61 RNISKNTTITIPAHNIPAFKPAKSFAAKVK 90


>gi|288928985|ref|ZP_06422831.1| DNA-binding protein HU [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329969|gb|EFC68554.1| DNA-binding protein HU [Prevotella sp. oral taxon 317 str. F0108]
          Length = 90

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 40/71 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+  I+   GLS+ DS + +      I ++ V+G+ +++  F TF V ++ +  G
Sbjct: 1  MNKTDLIDKIAAGSGLSKADSKKALDATVAAIKETLVKGDKVQLVGFGTFSVNERPAHGG 60

Query: 65 RNLQTNQEVKI 75
           N  T +++ I
Sbjct: 61 VNPATKEKITI 71


>gi|84498303|ref|ZP_00997100.1| Histone-like bacterial DNA-binding protein [Janibacter sp.
          HTCC2649]
 gi|84381803|gb|EAP97686.1| Histone-like bacterial DNA-binding protein [Janibacter sp.
          HTCC2649]
          Length = 235

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV+ + K  G SRK +T  +  + + I     +G  + I+ F TF   ++ +R G
Sbjct: 1  MNKGELVRELEKRLG-SRKAATEALDAVLDTIVREVTKGGKVGITGFGTFDRVERAARTG 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  +   V+I   +   F+A +  K  +  
Sbjct: 60 RNPHSGASVRIPKSKAPRFRAGAAFKTYVKK 90


>gi|218261480|ref|ZP_03476291.1| hypothetical protein PRABACTJOHN_01957 [Parabacteroides johnsonii
          DSM 18315]
 gi|218223998|gb|EEC96648.1| hypothetical protein PRABACTJOHN_01957 [Parabacteroides johnsonii
          DSM 18315]
          Length = 90

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 43/90 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  ISK  G+ ++     V +  + +  S  +GE + +  F +F +K++  +  
Sbjct: 1  MTKADIVSEISKSTGIDKQTVLSSVESFMDIVKSSLSQGENVYLRGFGSFVIKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN+  N  + I    +  FK +      + 
Sbjct: 61 RNISKNTTIIIPEHNIPSFKPAKTFLNEVK 90


>gi|58979381|gb|AAW83355.1| DNA-binding protein HU [Campylobacter jejuni]
          Length = 98

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 50/97 (51%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D +  +++  GL++KD+T     + + I D   +G++I    F TF  +++ +R  
Sbjct: 1   MTKADFISLVAQTAGLTKKDATTTTDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           R   T + +K+   RV  FK    LK+ +      +K
Sbjct: 61  RVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKK 97


>gi|304382715|ref|ZP_07365207.1| integration host factor subunit alpha [Prevotella marshii DSM
          16973]
 gi|304336166|gb|EFM02410.1| integration host factor subunit alpha [Prevotella marshii DSM
          16973]
          Length = 96

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 49/92 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   D +  +S+  G + +D+ + + TL + +CD    GE +  + F TF VK++  RV 
Sbjct: 1  MNNKDFITELSRRSGYTPEDTQKLIHTLIDGLCDGFDAGEPVVWAGFGTFEVKKRLERVI 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N  T Q++ I P+ V+ FK  S  K+R+   
Sbjct: 61 TNPSTGQKMLIPPKLVLNFKPVSSAKERLKKG 92


>gi|320008332|gb|ADW03182.1| histone family protein DNA-binding protein [Streptomyces
           flavogriseus ATCC 33331]
          Length = 218

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 1/107 (0%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV++I+ + G  R+ +   V  + + I  + V G+ + ++ F +F    + +R  
Sbjct: 1   MNKAQLVEAIADKVG-GRQQAADAVDVVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111
           RN QT + V++    V  F+A    K  +    +  K  +  V    
Sbjct: 60  RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKKLPKGGEVSVKKAP 106


>gi|167725689|ref|ZP_02408925.1| DNA-binding protein Hu-beta [Burkholderia pseudomallei DM98]
          Length = 69

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 35/69 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+ +++K   L++  + + V  + + I    +    + +S F TF +  + +R G
Sbjct: 1  MNKSQLIDAVAKHAELTKAQAAQSVDAVLDAIRTGLLEDGDVALSGFGTFGISARAARTG 60

Query: 65 RNLQTNQEV 73
          RN  T + +
Sbjct: 61 RNPATGEAI 69


>gi|198277146|ref|ZP_03209677.1| hypothetical protein BACPLE_03354 [Bacteroides plebeius DSM
          17135]
 gi|198269644|gb|EDY93914.1| hypothetical protein BACPLE_03354 [Bacteroides plebeius DSM
          17135]
          Length = 91

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 39/85 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +      +      + +S  + E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEIAKNTGIDKATVLATLEAFMGSVKESLSKDENVYLRGFGSFIVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  + I    +  FK +   
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85


>gi|197294717|ref|YP_001799258.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
 gi|171854044|emb|CAM12017.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
          Length = 94

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA---VRGEAIKISSFATFHVKQKGS 61
          +   D +K ++++  +S+K++ + + +    I +S       E + ++ F TF  KQ+ +
Sbjct: 1  MNTLDFLKILAEKHNVSQKEAAKILDSFVAAIYESVQSFEENEKLTLTGFGTFGAKQRTT 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          R G+N +T + + I  ++V VFK S   K 
Sbjct: 61 RQGKNPRTGETIDIPAKKVPVFKFSKNFKD 90


>gi|282878889|ref|ZP_06287653.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310]
 gi|281298888|gb|EFA91293.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310]
          Length = 95

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 50/92 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + +  +S+  G +++ +  +V TL  E+ +    GE+I I SF TF VK++  R+ 
Sbjct: 1  MNNKEFIAELSRRAGYTQEQTQNYVRTLVEEMTNILGEGESIAIPSFGTFEVKKRMERIL 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N  T +++ + P+ V+ F+    +K+++   
Sbjct: 61 TNPSTGKKMLVPPKLVLSFRPMPSVKEQLKKG 92


>gi|119717520|ref|YP_924485.1| nucleoid protein Hbs [Nocardioides sp. JS614]
 gi|119538181|gb|ABL82798.1| bacterial nucleoid protein Hbs [Nocardioides sp. JS614]
          Length = 202

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 45/94 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+ + +++  +  +RK +   + ++ + I     +GE + I+ F +F  + + +R  
Sbjct: 1  MNKSEFIDALAARYEGNRKAAAHALESVLDTITREVAKGEKVAITGFGSFEKRVREARWV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN QT   +K     V  F A + LK  +    +
Sbjct: 61 RNPQTGARIKAKKTAVPKFTAGADLKNVVSGAKK 94


>gi|298377242|ref|ZP_06987195.1| integration host factor, beta subunit [Bacteroides sp. 3_1_19]
 gi|298265656|gb|EFI07316.1| integration host factor, beta subunit [Bacteroides sp. 3_1_19]
          Length = 91

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +LV+S+ +E GL +      V  L   +      GE+I +  F +F   Q+  R+ 
Sbjct: 1  MNRGELVQSLVEETGLPKNVVRAVVNALPTVVAKGIREGESISMKGFGSFVPWQQSERLA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T +EV I PR  V FKA S L K + +
Sbjct: 61 RNPKTGEEVMITPRVSVKFKAGSDLLKELNE 91


>gi|150008609|ref|YP_001303352.1| DNA-binding protein HU [Parabacteroides distasonis ATCC 8503]
 gi|255014407|ref|ZP_05286533.1| DNA-binding protein HU [Bacteroides sp. 2_1_7]
 gi|256841374|ref|ZP_05546881.1| integration host factor, beta subunit [Parabacteroides sp. D13]
 gi|262383459|ref|ZP_06076595.1| DNA-binding protein HU [Bacteroides sp. 2_1_33B]
 gi|298376095|ref|ZP_06986051.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
 gi|301309507|ref|ZP_07215449.1| DNA-binding protein HU [Bacteroides sp. 20_3]
 gi|149937033|gb|ABR43730.1| DNA-binding protein HU [Parabacteroides distasonis ATCC 8503]
 gi|256737217|gb|EEU50544.1| integration host factor, beta subunit [Parabacteroides sp. D13]
 gi|262294357|gb|EEY82289.1| DNA-binding protein HU [Bacteroides sp. 2_1_33B]
 gi|298267132|gb|EFI08789.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
 gi|300832596|gb|EFK63224.1| DNA-binding protein HU [Bacteroides sp. 20_3]
          Length = 90

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 42/85 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  ISK  G+ ++     V +  + +  S  +GE + +  F +F +K++  +  
Sbjct: 1  MTKADIVSEISKSTGIDKQTVLASVESFMDIVKSSLAQGENVYLRGFGSFVIKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  + I    +  FK +   
Sbjct: 61 RNISKNTTIIIPEHNIPSFKPAKTF 85


>gi|260170244|ref|ZP_05756656.1| DNA-binding protein HU [Bacteroides sp. D2]
          Length = 90

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 44/88 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   +    +++  G + KD++  + +L + +      G  + I  F +F VK+K  R+ 
Sbjct: 1  MNNKEFTSELAERLGYTIKDTSELMNSLLSSMTQELEEGNVVAIQGFGSFEVKKKAERIS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
           N  + Q + + P+ V+ ++ S+ LK +
Sbjct: 61 INPASKQRMLVPPKLVLSYRPSNTLKDK 88


>gi|254883542|ref|ZP_05256252.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA]
 gi|254836335|gb|EET16644.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA]
          Length = 93

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 46/92 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++V  IS++ G+ +      V +    + +S V G  + +  F +F +K++  ++ 
Sbjct: 1  MTKAEIVAQISRQSGIEKTVVMTVVESFMENVKESMVAGNEVFLRGFGSFIIKRRAEKMA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN+  N  +KI    +  FK +      + ++
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKAFLNAVKEN 92


>gi|288802185|ref|ZP_06407625.1| HimA protein [Prevotella melaninogenica D18]
 gi|302346576|ref|YP_003814874.1| putative DNA-binding protein HU [Prevotella melaninogenica ATCC
          25845]
 gi|288335152|gb|EFC73587.1| HimA protein [Prevotella melaninogenica D18]
 gi|302151040|gb|ADK97301.1| putative DNA-binding protein HU [Prevotella melaninogenica ATCC
          25845]
          Length = 97

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 46/92 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + + +++   G ++ +S + V T+ + +  S   G+ + +  F TF VK++  RV 
Sbjct: 1  MNNKEFIAALAARTGYTQDESQKMVKTVVDMMGKSFETGDPVPVIGFGTFEVKKRLERVM 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N  T   + + P+ V+ FK ++ +K  +   
Sbjct: 61 VNPSTGLRMLVPPKLVLNFKPAATIKGHVRKG 92


>gi|301308636|ref|ZP_07214588.1| putative virulence-associated protein [Bacteroides sp. 20_3]
 gi|300833160|gb|EFK63778.1| putative virulence-associated protein [Bacteroides sp. 20_3]
          Length = 91

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +LV+S+ +E GL +      V  L   +      GE+I +  F +F   Q+  R+ 
Sbjct: 1  MNRGELVQSLVEETGLPKNVVRTVVNALPTVVAKGMREGESISMKGFGSFVPWQQSERLA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T +EV I PR  V FKA S L K + +
Sbjct: 61 RNPKTGEEVMITPRVSVKFKAGSDLLKELNE 91


>gi|14194634|sp|Q9RZ89|DBH_DEIRA RecName: Full=DNA-binding protein HU
          Length = 122

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 47/84 (55%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
           ++ LV+ ++ + GL++K S   ++++   +  +   G+++ +    T  VK+  +R G  
Sbjct: 36  KTQLVEMVADQTGLTKKQSEEAISSMLECVVSALQSGKSVGLPGLGTLSVKETAARTGVR 95

Query: 67  LQTNQEVKIDPRRVVVFKASSILK 90
             T+++++I   + V FK +S LK
Sbjct: 96  PGTSEKIQIPAGKKVAFKVASTLK 119


>gi|34556922|ref|NP_906737.1| putative DNA-binding protein II (HB) [Wolinella succinogenes DSM
          1740]
 gi|34482637|emb|CAE09637.1| PUTATIVE DNA-BINDING PROTEIN II (HB) [Wolinella succinogenes]
          Length = 91

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ + +++ + GLS+KDS   + ++   + ++  +G+++    F  F   ++ +R  
Sbjct: 1  MKKAEFIDAVALKAGLSKKDSELALDSILEVLTEALAQGKSVNFIGFGGFSTIERAARKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +   T++ V +   R V FK    LK+ +  
Sbjct: 61 KVPGTDKVVDVPAVRAVKFKVGKQLKEAVAK 91


>gi|124007134|sp|Q1RHD4|DBH_RICBR RecName: Full=DNA-binding protein HU
          Length = 101

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 47/100 (47%), Gaps = 9/100 (9%)

Query: 5   ITRSDLVKSISKEF---------GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55
           + +++ +  +++             ++ D+ + +  +   I  +     ++ I+ F +F 
Sbjct: 1   MNKTEFIAFMTEHGHHHKHQGHKSFTKADAEKALNWVLESIISATKHQHSVNITGFGSFG 60

Query: 56  VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           ++ + SR GRN +T  ++ I   +  VFKA S LK+   +
Sbjct: 61  IQSRKSREGRNPKTGAKMTIPAYKQPVFKAGSKLKEACNN 100


>gi|302865832|ref|YP_003834469.1| histone family protein DNA-binding protein [Micromonospora
          aurantiaca ATCC 27029]
 gi|315502377|ref|YP_004081264.1| histone family protein DNA-binding protein [Micromonospora sp.
          L5]
 gi|302568691|gb|ADL44893.1| histone family protein DNA-binding protein [Micromonospora
          aurantiaca ATCC 27029]
 gi|315408996|gb|ADU07113.1| histone family protein DNA-binding protein [Micromonospora sp.
          L5]
          Length = 203

 Score = 97.7 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+++++   G  RK +T  +  +  E+  +  +GE + I+ F  F  + +G+R  
Sbjct: 1  MNKAELIEALAVRLG-DRKTATAALDAVLAEVQAAVTKGEKVAITGFGAFEKRVRGARTA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T + VK+    V  F+A +  K+ +   
Sbjct: 60 RNPRTGEAVKVKKTSVPTFRAGAGFKEMVASG 91


>gi|160886223|ref|ZP_02067226.1| hypothetical protein BACOVA_04230 [Bacteroides ovatus ATCC 8483]
 gi|237715013|ref|ZP_04545494.1| DNA-binding protein HU [Bacteroides sp. D1]
 gi|237723035|ref|ZP_04553516.1| DNA-binding protein HU [Bacteroides sp. 2_2_4]
 gi|255690595|ref|ZP_05414270.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565]
 gi|260173653|ref|ZP_05760065.1| DNA-binding protein HU [Bacteroides sp. D2]
 gi|262409038|ref|ZP_06085583.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22]
 gi|293372582|ref|ZP_06618964.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
 gi|294647093|ref|ZP_06724699.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a]
 gi|294807153|ref|ZP_06765970.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b]
 gi|298481899|ref|ZP_07000089.1| DNA-binding protein HU [Bacteroides sp. D22]
 gi|299146728|ref|ZP_07039796.1| DNA-binding protein HU [Bacteroides sp. 3_1_23]
 gi|315921915|ref|ZP_07918155.1| DNA binding protein [Bacteroides sp. D2]
 gi|156108108|gb|EDO09853.1| hypothetical protein BACOVA_04230 [Bacteroides ovatus ATCC 8483]
 gi|229444846|gb|EEO50637.1| DNA-binding protein HU [Bacteroides sp. D1]
 gi|229447557|gb|EEO53348.1| DNA-binding protein HU [Bacteroides sp. 2_2_4]
 gi|260623864|gb|EEX46735.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565]
 gi|262353249|gb|EEZ02344.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22]
 gi|292632391|gb|EFF50987.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
 gi|292637557|gb|EFF55969.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a]
 gi|294445653|gb|EFG14303.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b]
 gi|295087866|emb|CBK69389.1| Bacterial nucleoid DNA-binding protein [Bacteroides xylanisolvens
          XB1A]
 gi|298272121|gb|EFI13692.1| DNA-binding protein HU [Bacteroides sp. D22]
 gi|298517219|gb|EFI41100.1| DNA-binding protein HU [Bacteroides sp. 3_1_23]
 gi|313695790|gb|EFS32625.1| DNA binding protein [Bacteroides sp. D2]
          Length = 91

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 41/85 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K+ G+ ++     V    + + DS    E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEITKKTGIDKQTVLTTVEAFMDAVKDSLSNDENVYLRGFGSFVVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  + I    +  FK +   
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85


>gi|15607110|ref|NP_214492.1| integration host factor beta subunit [Aquifex aeolicus VF5]
 gi|2984363|gb|AAC07882.1| integration host factor beta subunit [Aquifex aeolicus VF5]
          Length = 100

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 52/98 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+SD+ K +++  G+S K +   V   F  +    + GE +++    TF +K+K  R  
Sbjct: 1   MTKSDIAKELARRHGISYKKALLIVNMTFEILKAKILNGEKVEVRGLGTFKLKRKPGRFV 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           +N +T  E+ +  R V  +K S +L+K++  D    +C
Sbjct: 61  KNPKTGIEIYVKERYVPYYKMSKLLRKKLNGDKEREEC 98


>gi|325854393|ref|ZP_08171592.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A]
 gi|325484187|gb|EGC87121.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A]
          Length = 97

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 46/92 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + +  ++   G ++ +S + V T+   +  S   GE + IS F TF VK++  RV 
Sbjct: 1  MNNKEFIAELALRTGYTQDESQKMVRTVIEMMGKSFETGEPVSISGFGTFEVKKRLERVM 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N  T   + + P+ V+ FK ++ +K ++   
Sbjct: 61 VNPSTGLRMLVPPKLVLNFKPAANIKGQVRKG 92


>gi|313185143|gb|ADR50136.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 6/99 (6%)

Query: 3   KTITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
            TIT+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+
Sbjct: 7   PTITKSDIVDQISLNTKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVR 66

Query: 58  QKGSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           ++  R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 67  KRKGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|293400638|ref|ZP_06644783.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305664|gb|EFE46908.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 94

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 44/75 (58%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS+ + +  LV+ ++++  +++KD+T  V T+F EI  +   G  + +S F  F V ++ 
Sbjct: 1  MSEILNKKALVEVVAEKLEMTKKDATVAVDTVFEEITKTLADGGKVDLSGFGKFEVAERP 60

Query: 61 SRVGRNLQTNQEVKI 75
          +R+G N  T + + I
Sbjct: 61 ARMGINPATKEPLPI 75


>gi|182414469|ref|YP_001819535.1| histone family protein DNA-binding protein [Opitutus terrae
          PB90-1]
 gi|177841683|gb|ACB75935.1| histone family protein DNA-binding protein [Opitutus terrae
          PB90-1]
          Length = 102

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS  +T+ ++V  I K+ G  +K     V    + I  +   G  +++ +F    V+ + 
Sbjct: 1  MSTNLTKREIVLEIYKKTGFPQKQVVESVQLTLDIIQKALAEGRNVELRNFGVLEVQVRK 60

Query: 61 SRVGRNLQTNQ-EVKIDPRRVVVFKASSILKKRIMD 95
          +R+GRN    + EV I  R VV FK+  ILK+++  
Sbjct: 61 ARIGRNPNKPEAEVVIPQRAVVKFKSGKILKQQLKK 96


>gi|153808081|ref|ZP_01960749.1| hypothetical protein BACCAC_02367 [Bacteroides caccae ATCC 43185]
 gi|149128984|gb|EDM20200.1| hypothetical protein BACCAC_02367 [Bacteroides caccae ATCC 43185]
          Length = 91

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 40/85 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K+ G+ +      V    + + DS    E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEITKKTGIDKTTVLTTVEAFMDAVKDSLSNDENVYLRGFGSFVVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  + I    +  FK +   
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85


>gi|294673427|ref|YP_003574043.1| HU family DNA-binding protein [Prevotella ruminicola 23]
 gi|294471958|gb|ADE81347.1| DNA-binding protein, HU family [Prevotella ruminicola 23]
          Length = 91

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63
          +T+++++  I++E GL++KD    V      I +S     E + +  F TF VK++  + 
Sbjct: 1  MTKAEIINRIAEETGLAKKDVAISVEAFMECIRESLASEKENVYLRGFGTFVVKRRAQKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN+  N  + I+      FK S    +++ 
Sbjct: 61 ARNISKNTTLVIEAHDFPAFKPSKSFIEKMK 91


>gi|33152542|ref|NP_873895.1| integration host factor, alpha chain [Haemophilus ducreyi
          35000HP]
 gi|71152153|sp|Q7VLG4|IHFA_HAEDU RecName: Full=Integration host factor subunit alpha;
          Short=IHF-alpha
 gi|33148766|gb|AAP96284.1| integration host factor, alpha chain [Haemophilus ducreyi
          35000HP]
          Length = 98

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 53/92 (57%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ +   S+  ++G  +  + +FV   F EI  +   G+ +K+S F  F +++K +R 
Sbjct: 2  TLTKVEFTASLISKYGFDKSVAKQFVEQFFEEIRVALANGQEVKLSGFGNFSLRKKNARP 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T + V +  RRVVVFK     ++R+ +
Sbjct: 62 GRNPKTGESVAVSARRVVVFKPGQKFRERVEN 93


>gi|269123561|ref|YP_003306138.1| histone family protein DNA-binding protein [Streptobacillus
          moniliformis DSM 12112]
 gi|268314887|gb|ACZ01261.1| histone family protein DNA-binding protein [Streptobacillus
          moniliformis DSM 12112]
          Length = 93

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 47/92 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++   V+  +K  G ++K S   V      + +  V+GE ++   + +F V+++  R G
Sbjct: 1  MSKKGFVEEYAKLTGETKKRSEELVNAFLETVENLVVKGEDVQFVGWGSFKVQERKEREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N +T +E+KI  ++V+ FK      +++   
Sbjct: 61 INPKTQKEIKIPAKKVLKFKVGKKFAEKVSKA 92


>gi|117928796|ref|YP_873347.1| histone family protein DNA-binding protein [Acidothermus
          cellulolyticus 11B]
 gi|117649259|gb|ABK53361.1| histone family protein DNA-binding protein [Acidothermus
          cellulolyticus 11B]
          Length = 163

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++   G  +K ++  V  + + I  +  RGE + I+ F  F   ++ +R+ 
Sbjct: 1  MNKAELITAVAARIG-DKKTASEAVEAVIDTITRTVARGEKVAITGFGIFEKVERAARMA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN  T + V++    V  F+A + LK  +   ++
Sbjct: 60 RNPATGERVRVKKTSVPKFRAGTRLKGVVSGAIK 93


>gi|23006898|ref|ZP_00049004.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magnetotacticum MS-1]
          Length = 80

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 47/69 (68%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           KT+TR+DL +++ ++ GLSR +S   V T+  EIC+    GE +K+SSF +F V+ KG 
Sbjct: 3  GKTVTRADLSEAVYQQVGLSRAESAALVETVLAEICNCLSSGETVKLSSFGSFVVRSKGK 62

Query: 62 RVGRNLQTN 70
          R+GRN +T 
Sbjct: 63 RIGRNPKTG 71


>gi|262384433|ref|ZP_06077568.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B]
 gi|262294136|gb|EEY82069.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B]
          Length = 91

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 47/91 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +LV+S+ +E GL +      V  L   +      GE+I +  F +F   Q+  R+ 
Sbjct: 1  MNRGELVQSLVEETGLPKNVVRTVVNALPTVVAKGIREGESISMKGFGSFVPWQQSERLA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T +EV I PR  V FKA S L K + +
Sbjct: 61 RNPKTGEEVMITPRVSVKFKAGSDLLKELNE 91


>gi|147678826|ref|YP_001213041.1| nucleoid DNA-binding protein [Pelotomaculum thermopropionicum SI]
 gi|146274923|dbj|BAF60672.1| bacterial nucleoid DNA-binding protein [Pelotomaculum
          thermopropionicum SI]
          Length = 92

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + + D ++++       +  ++ R +  +   I  ++     +++  F  F ++ +  R 
Sbjct: 1  MIKRDFLEAVRAAGNYKTLAEAKRALDAVTEAITFASANHNTVRLRGFGAFIIRDRSPRA 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GR+++T Q + I  ++V+VFK    L++ ++D
Sbjct: 61 GRDIRTGQPISIPAKKVIVFKPGKALRQAVLD 92


>gi|238752802|ref|ZP_04614270.1| DNA-binding protein HU-alpha [Yersinia rohdei ATCC 43380]
 gi|238709000|gb|EEQ01250.1| DNA-binding protein HU-alpha [Yersinia rohdei ATCC 43380]
          Length = 67

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 32/66 (48%)

Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88
          + +    I +S   G+ +++  F TF V  +  R GRN QT +E+KI    V  F +   
Sbjct: 1  MESTLAAITESLKDGDPVQLVGFGTFKVNHRNERTGRNPQTGKEIKIAAANVPAFVSGKA 60

Query: 89 LKKRIM 94
          LK  + 
Sbjct: 61 LKDSVK 66


>gi|332091766|gb|EGI96845.1| integration host factor subunit beta [Shigella dysenteriae
          155-74]
 gi|332093460|gb|EGI98518.1| integration host factor subunit beta [Shigella boydii 3594-74]
 gi|332758997|gb|EGJ89307.1| integration host factor subunit beta [Shigella flexneri 4343-70]
 gi|332767859|gb|EGJ98049.1| ihfB [Shigella flexneri 2930-71]
          Length = 66

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%)

Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          +   +  +  +GE I+I  F +F +  +  R GRN +T  +V+++ + V  FK    L+ 
Sbjct: 1  MLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRD 60

Query: 92 RIM 94
          R  
Sbjct: 61 RAN 63


>gi|124514774|gb|EAY56286.1| putative integration host factor, alpha subunit HimA like
          [Leptospirillum rubarum]
 gi|206602432|gb|EDZ38913.1| putative integration host factor, alpha subunit HimA-like
          [Leptospirillum sp. Group II '5-way CG']
          Length = 98

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 5  ITRSDLVKSISKEFGLSRKDST---RFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + R D+V+ I ++   SR  +    +    +  EI  +   GE +KI+ F TF V++   
Sbjct: 1  MKRLDIVQRILEKPEYSRYTAKFVGQIFDGILEEISATLENGEDVKITGFGTFIVRKIND 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          R GRN +T + V I     V+F  S  L K 
Sbjct: 61 RPGRNPKTGEPVLIPAHHTVLFHPSRSLLKA 91


>gi|255009783|ref|ZP_05281909.1| integration host factor, beta subunit [Bacteroides fragilis
          3_1_12]
 gi|313147572|ref|ZP_07809765.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
 gi|313136339|gb|EFR53699.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
          Length = 97

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +L+ +I++   +++ D    + T F+   ++   G++I I  F T   K++ ++V 
Sbjct: 1  MTKQELINTIAERAEINKIDVEHAINTAFDVAKETIANGDSIFIRGFGTLSPKRRQAKVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN+     V +    V  FK     K ++ +
Sbjct: 61 RNITAGTSVVVPETIVPHFKPCKAFKGQVNE 91


>gi|253570965|ref|ZP_04848373.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|319644004|ref|ZP_07998563.1| hypothetical protein HMPREF9011_04166 [Bacteroides sp. 3_1_40A]
 gi|251839914|gb|EES67997.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|313157143|gb|EFR56573.1| putative DNA-binding protein HU-alpha [Alistipes sp. HGB5]
 gi|317384352|gb|EFV65320.1| hypothetical protein HMPREF9011_04166 [Bacteroides sp. 3_1_40A]
          Length = 93

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 45/92 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++V  IS++ G+ +      + +    + +S V G  + +  F +F +K++  +  
Sbjct: 1  MTKAEIVAQISRQSGIEKTVVMTVIESFMENVKESMVAGNEVFLRGFGSFIIKRRAEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN+  N  +KI    +  FK +      + ++
Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKAFLNAVKEN 92


>gi|312889814|ref|ZP_07749360.1| histone family protein DNA-binding protein [Mucilaginibacter
           paludis DSM 18603]
 gi|311297740|gb|EFQ74863.1| histone family protein DNA-binding protein [Mucilaginibacter
           paludis DSM 18603]
          Length = 99

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 46/99 (46%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+++++  IS + G+ + D    V   F  +  S V GE + +  F +F VK++  +  
Sbjct: 1   MTKAEIIAEISTKTGIEKIDVQETVEAFFKVVKTSMVGGENVYVRGFGSFVVKKRAKKTA 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           RN+  N  + I    V  FK +    +++    + +   
Sbjct: 61  RNISKNTAIIIPEHFVPSFKPAKTFVEKVRTGNKVKAVK 99


>gi|58698807|ref|ZP_00373686.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58534682|gb|EAL58802.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 115

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 54/91 (59%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           +V  I++E GLS++DS   +  + +EI  S  +   +KISSF TF VK+K  R G    T
Sbjct: 16  IVGDINQEIGLSKEDSASIIDDILDEIKTSLAKDGIVKISSFGTFLVKKKKERPGNIPNT 75

Query: 70  NQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           +++V I  R  V F+ S I+K + + + +G+
Sbjct: 76  SEKVMIQARNSVSFRPSKIIKNQSIINEQGK 106


>gi|167763389|ref|ZP_02435516.1| hypothetical protein BACSTE_01763 [Bacteroides stercoris ATCC
           43183]
 gi|167698683|gb|EDS15262.1| hypothetical protein BACSTE_01763 [Bacteroides stercoris ATCC
           43183]
          Length = 109

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 41/93 (44%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           K +T++D+V  I+K  G+ +      V    + +  S  + E + +  F +F VK++  +
Sbjct: 17  KKMTKADIVNEITKNTGIDKVTVLATVEAFMDAVKASLSKDENVYLRGFGSFVVKKRAQK 76

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             RN+  N  + I    +  FK +      +  
Sbjct: 77  TARNISKNTTIIIPEHNIPAFKPAKTFTIAVKK 109


>gi|255011482|ref|ZP_05283608.1| putative DNA-binding protein HU [Bacteroides fragilis 3_1_12]
 gi|313149304|ref|ZP_07811497.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
 gi|313138071|gb|EFR55431.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
          Length = 95

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 46/85 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D++  IS+E G+ RK     +      + D+  RG ++ +  F TF +K++ ++  
Sbjct: 1  MTKADIINRISEEQGIDRKTVALVIEGFMKCVKDALGRGRSVFLRGFGTFSLKKRAAKKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          +N+Q +  + I  R+V  FK S   
Sbjct: 61 QNIQQHITICIPTRKVPHFKPSESF 85


>gi|262067818|ref|ZP_06027430.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693]
 gi|291378542|gb|EFE86060.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693]
          Length = 90

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 47/85 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  +S++ G+ + ++ +F+ TL   I +   +GE   +    TF VK +  + G
Sbjct: 1  MLKKELLNVLSEKLGIKKIETEKFLDTLEEVITEELKKGEDFNLGKLGTFKVKDRAEKNG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
           N +T +++ I  R+ V FKAS  L
Sbjct: 61 VNPKTGEKIVIPARKAVTFKASKNL 85


>gi|222480977|ref|YP_002567214.1| histone family protein DNA-binding protein [Halorubrum
           lacusprofundi ATCC 49239]
 gi|222453879|gb|ACM58144.1| histone family protein DNA-binding protein [Halorubrum
           lacusprofundi ATCC 49239]
          Length = 206

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 19  GLSRKDSTRFVTTLFNEICDSAVRGEAIKI-------SSFATFHVKQKGSRVGRNLQTNQ 71
           GLS  D+   +    N    +  +G+ + +         F TF + ++ +R GRN QT +
Sbjct: 124 GLSEDDAKWALEAFINATTKALKKGDRLSLGEEEDENKGFGTFSISKRSARTGRNPQTGK 183

Query: 72  EVKIDPRRVVVFKASSILKKRIM 94
           E++I  + VV FKA + L K + 
Sbjct: 184 EIQIAAKNVVKFKAGAELSKAVK 206



 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 38/64 (59%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++S++ E GLS+ D+ R + T  +    +  +G++  +  F +F + ++ +R G
Sbjct: 1  MNKAELIESMASESGLSKSDAKRALDTFTDATTKALEKGDSAVLVGFGSFSISKRSARTG 60

Query: 65 RNLQ 68
          RN  
Sbjct: 61 RNPS 64


>gi|288800013|ref|ZP_06405472.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333261|gb|EFC71740.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039]
          Length = 97

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 48/92 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + +  +S++   +++ +   +  + + +  +   GE++ +S F TF VK++  R+ 
Sbjct: 1  MNNKEFITELSRQLEYTQEHTQGCIRCVIDAMSMAFDNGESVSVSGFGTFEVKKRLERIM 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N  T Q + + P+ V+ FK S+ +K+ +   
Sbjct: 61 VNPSTGQRMIVPPKLVLNFKPSASIKEELKKG 92


>gi|10954922|ref|NP_053342.1| hypothetical protein pTi-SAKURA_p104 [Agrobacterium tumefaciens]
 gi|41223342|ref|NP_396642.2| HNS-type DNA binding protein [Agrobacterium tumefaciens str. C58]
 gi|6498275|dbj|BAA87727.1| tiorf102 [Agrobacterium tumefaciens]
 gi|159141770|gb|AAK91083.2| HNS-type DNA binding protein [Agrobacterium tumefaciens str. C58]
          Length = 92

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 42/90 (46%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+ E  L++  +   V ++F +I D+A+ G    I SF  F +K    R GR
Sbjct: 3  TTNEIADKIAAEQSLTKAQAKTIVESVFKQITDAALAGAETSIPSFGKFKLKDTPEREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N  T   +KI   + + F     +K  +  
Sbjct: 63 NPATGATIKIAASKKLTFTPGKAVKDALNG 92


>gi|300727620|ref|ZP_07061009.1| HimA protein [Prevotella bryantii B14]
 gi|299775140|gb|EFI71743.1| HimA protein [Prevotella bryantii B14]
          Length = 103

 Score = 96.5 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 50/92 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + +  +++  G +++D+ + V T+ +E+ D     + I I SF TF VK++  R+ 
Sbjct: 1  MNNKEFITELAQRSGYNQRDTQKLVRTVIDEMTDHFAETDIISIPSFGTFEVKKRLERIV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N  T + + + P+ V+ FK    +K+++ + 
Sbjct: 61 VNPATKKRMLVPPKLVLGFKPVQSIKEQLKNA 92


>gi|107101236|ref|ZP_01365154.1| hypothetical protein PaerPA_01002269 [Pseudomonas aeruginosa
          PACS2]
          Length = 63

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          +   +  +   G+++ +  F TF VK++ +R GRN QT + +KI   ++  FKA   LK 
Sbjct: 1  MIESVTGALKAGDSVVLVGFGTFAVKERAARTGRNPQTGKPIKIAAAKIPGFKAGKALKD 60

Query: 92 RIM 94
           + 
Sbjct: 61 AVN 63


>gi|222108996|ref|YP_002551262.1| HNS-type DNA binding protein [Agrobacterium radiobacter K84]
 gi|221727918|gb|ACM30968.1| HNS-type DNA binding protein [Agrobacterium radiobacter K84]
          Length = 92

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 43/90 (47%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+ +  L++  +   V ++F +I D+A+ G    I SF  F +K   +R GR
Sbjct: 3  TTNEIADKIAADQNLTKAQAKTIVESVFKQITDAALAGAETSIPSFGKFKLKDTPAREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N  T   +KI   + + F     +K  +  
Sbjct: 63 NPATGATIKIAASKKLTFAPGKAVKDALNG 92


>gi|168699941|ref|ZP_02732218.1| probable DNA-binding protein HU [Gemmata obscuriglobus UQM 2246]
          Length = 167

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 9/101 (8%)

Query: 5   ITRSDLVKSISKEFG---------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55
           +T+ ++VK+I              L++  +   V   F  I ++ V    I++ +F  F 
Sbjct: 1   MTKKEIVKTICDRANKKNLIPKHNLTQLATKEIVQWTFEAIIETLVSEGRIELRNFGVFE 60

Query: 56  VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           VKQ+  R  RN +T   V+++ + VV F+    +++++   
Sbjct: 61  VKQRKPRKARNPRTGAAVEVEAKNVVTFQPGKTMEEQVKKS 101


>gi|325860232|ref|ZP_08173357.1| DNA-binding protein HU-beta [Prevotella denticola CRIS 18C-A]
 gi|325482319|gb|EGC85327.1| DNA-binding protein HU-beta [Prevotella denticola CRIS 18C-A]
          Length = 91

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 40/71 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+   GLS+ D+ + +      I  + V G+ +++  F TF V ++ +  G
Sbjct: 1  MNKTELIEKIAAGAGLSKADAKKALDATTEAIKGALVVGDKVQLVGFGTFAVNERPAHEG 60

Query: 65 RNLQTNQEVKI 75
           N  T Q+++I
Sbjct: 61 INPATKQKIQI 71


>gi|288818327|ref|YP_003432675.1| integration host factor alpha subunit [Hydrogenobacter
          thermophilus TK-6]
 gi|288787727|dbj|BAI69474.1| integration host factor alpha subunit [Hydrogenobacter
          thermophilus TK-6]
 gi|308751924|gb|ADO45407.1| histone family protein DNA-binding protein [Hydrogenobacter
          thermophilus TK-6]
          Length = 100

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 5  ITRSDLVKSISK--EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +TR  +V  + K    GLS+K     +  +F++I  + V G+ +KIS F TF V+    R
Sbjct: 1  MTRKSIVDDLWKDGNSGLSKKTLYSIINYIFDQINQALVEGQEVKISGFGTFRVRHTKGR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSIL 89
           GRN +T +   I P+R V  K S  L
Sbjct: 61 RGRNPRTGEMRVIHPKRTVQLKPSKKL 87


>gi|145593811|ref|YP_001158108.1| histone family protein DNA-binding protein [Salinispora tropica
           CNB-440]
 gi|145303148|gb|ABP53730.1| histone family protein DNA-binding protein [Salinispora tropica
           CNB-440]
          Length = 237

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           + + +++L+++++   G  RK ++  +  +  E+  +  +GE + I+ F  F  + +G+R
Sbjct: 16  EVVNKAELIETLAVRLG-DRKTASAALDAVLTEVQAAVTKGEKVSITGFGAFEKRVRGAR 74

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
             RN +T + VK+    V  F+  +  K+ +   
Sbjct: 75  TARNPRTGEAVKVKKTSVPTFRPGTGFKEMVASG 108


>gi|15599135|ref|NP_252629.1| DNA binding protein [Pseudomonas aeruginosa PAO1]
 gi|107103457|ref|ZP_01367375.1| hypothetical protein PaerPA_01004527 [Pseudomonas aeruginosa
          PACS2]
 gi|116051980|ref|YP_789177.1| putative DNA binding protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889778|ref|YP_002438642.1| putative DNA binding protein [Pseudomonas aeruginosa LESB58]
 gi|254236833|ref|ZP_04930156.1| hypothetical protein PACG_02853 [Pseudomonas aeruginosa C3719]
 gi|254242628|ref|ZP_04935950.1| hypothetical protein PA2G_03387 [Pseudomonas aeruginosa 2192]
 gi|296387535|ref|ZP_06877010.1| putative DNA binding protein [Pseudomonas aeruginosa PAb1]
 gi|313109375|ref|ZP_07795338.1| putative DNA binding protein [Pseudomonas aeruginosa 39016]
 gi|9950127|gb|AAG07327.1|AE004812_2 probable DNA binding protein [Pseudomonas aeruginosa PAO1]
 gi|14028721|gb|AAK52477.1|AF345630_1 histone-like protein HU form N [Pseudomonas aeruginosa PAO1]
 gi|115587201|gb|ABJ13216.1| histone-like protein HU form N [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|126168764|gb|EAZ54275.1| hypothetical protein PACG_02853 [Pseudomonas aeruginosa C3719]
 gi|126196006|gb|EAZ60069.1| hypothetical protein PA2G_03387 [Pseudomonas aeruginosa 2192]
 gi|218770001|emb|CAW25763.1| probable DNA binding protein [Pseudomonas aeruginosa LESB58]
 gi|310881840|gb|EFQ40434.1| putative DNA binding protein [Pseudomonas aeruginosa 39016]
          Length = 93

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 38/92 (41%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  L++ I++     +      +  L   + D+      I +       V ++ +R 
Sbjct: 2  ALTKDQLIQDIAEAIDAQKTTVRSALDQLAEIVKDALENDGEITLPGIGKLKVSERPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN QT + ++I  +RV  F  +  L   I  
Sbjct: 62 GRNPQTGKAIEIAAKRVAKFVPAKALTDAING 93


>gi|29346909|ref|NP_810412.1| DNA-binding protein HU [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572374|ref|ZP_04849777.1| DNA-binding protein HU [Bacteroides sp. 1_1_6]
 gi|298386444|ref|ZP_06996000.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
 gi|29338807|gb|AAO76606.1| DNA-binding protein HU [Bacteroides thetaiotaomicron VPI-5482]
 gi|251838149|gb|EES66237.1| DNA-binding protein HU [Bacteroides sp. 1_1_6]
 gi|298260821|gb|EFI03689.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
          Length = 91

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 39/85 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K+ G+ +      V      + DS    E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEITKKTGIDKTTVLTTVEAFMEAVKDSLSNDENVYLRGFGSFVVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  + I    +  FK +   
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85


>gi|194246520|ref|YP_002004159.1| Bacterial nucleoid DNA-binding protein [Candidatus Phytoplasma
          mali]
 gi|193806877|emb|CAP18306.1| Bacterial nucleoid DNA-binding protein [Candidatus Phytoplasma
          mali]
          Length = 96

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 46/87 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + + +K +S +   + K+  + +  + + I  + ++ E I I+ F TF VK +  R G
Sbjct: 1  MNKIEFIKQLSDKLETTEKEGKKIINAVIDVIRINLLQNEKILITGFGTFCVKTRSEREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          ++ +T + +KI  +++  FK S   K 
Sbjct: 61 KHPKTREIIKIPAKKIPSFKMSKRFKD 87


>gi|1280573|gb|AAC73094.1| histone-like protein HBbu [Borrelia afzelii]
          Length = 108

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  I+         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   VTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKVLDHNVAYFRPGKDLKERVWG 105


>gi|222083260|ref|YP_002542663.1| HNS-type DNA binding protein [Agrobacterium vitis S4]
 gi|221738640|gb|ACM39478.1| HNS-type DNA binding protein [Agrobacterium vitis S4]
          Length = 92

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 41/90 (45%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+ E  L +  +   V ++F +I ++A+ G    I SF  F +K    R GR
Sbjct: 3  TTNEIADKIAAEQNLPKAQAKTIVESVFKQITEAALAGAETSIPSFGKFKLKDTPEREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N  T   +KI   + + F     +K  +  
Sbjct: 63 NPATGATIKIAASKKLTFTPGKAVKDALNG 92


>gi|317476991|ref|ZP_07936233.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316906784|gb|EFV28496.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 90

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 47/88 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   +    +S+  G + KD++  VT+L +++      G  I I  F TF VK+K  R+ 
Sbjct: 1  MNNKEFTSELSRRLGYTLKDTSELVTSLLSDMTRQLEEGNVISIQGFGTFEVKKKAERIS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
           N  T Q + + P+ V+ +K S++LK +
Sbjct: 61 VNPTTKQRMLVPPKLVLTYKPSTLLKDK 88


>gi|325965076|ref|YP_004242982.1| bacterial nucleoid DNA-binding protein [Arthrobacter
          phenanthrenivorans Sphe3]
 gi|323471163|gb|ADX74848.1| bacterial nucleoid DNA-binding protein [Arthrobacter
          phenanthrenivorans Sphe3]
          Length = 95

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K   RS+LV  ++ + G S+      +  LF     S   GE I I  +       + 
Sbjct: 1  MAK--NRSELVAEVAGKAGTSQAAVNSVLDALFEVFETSVAAGEKITIPGWLAVERTDRA 58

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +R GRN QT + ++I     V   A S LK  + +
Sbjct: 59 ARTGRNPQTGETIQIAAGHSVKLTAGSKLKAAVSN 93


>gi|313159797|gb|EFR59153.1| DNA-binding protein HU [Alistipes sp. HGB5]
          Length = 90

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 40/90 (44%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +      V    + I  S      + +  F +F VK++  +V 
Sbjct: 1  MTKADIVSEIAKSTGVEKVQVQAIVEAFMDSIKTSLTNKNNVYLRGFGSFIVKKRAKKVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN+  N  + I    +  FK +     ++ 
Sbjct: 61 RNISKNTTITIPEHNIPAFKPAKSFAAKVK 90


>gi|312116028|ref|YP_004013624.1| histone family protein DNA-binding protein [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311221157|gb|ADP72525.1| histone family protein DNA-binding protein [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 126

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 44/85 (51%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
            L   +++  GLS+K +   ++   + I     +G  I+I+   T  V+++ +R GRN  
Sbjct: 42  QLATEVAEAHGLSQKQANEVLSEAVSSIGKHLKKGARIRIAGLGTLEVRKRAARTGRNPA 101

Query: 69  TNQEVKIDPRRVVVFKASSILKKRI 93
           T + ++I   + V F+A+  L + I
Sbjct: 102 TGEAIEIKASKKVAFRAAKDLSESI 126


>gi|188997158|ref|YP_001931409.1| histone family protein DNA-binding protein [Sulfurihydrogenibium
          sp. YO3AOP1]
 gi|237756500|ref|ZP_04585032.1| DNA-binding protein HU 1 [Sulfurihydrogenibium yellowstonense
          SS-5]
 gi|188932225|gb|ACD66855.1| histone family protein DNA-binding protein [Sulfurihydrogenibium
          sp. YO3AOP1]
 gi|237691348|gb|EEP60424.1| DNA-binding protein HU 1 [Sulfurihydrogenibium yellowstonense
          SS-5]
          Length = 98

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 6/96 (6%)

Query: 5  ITRSDLVKSIS--KEFGLSRKDSTRFVTTLFNEICDSAV----RGEAIKISSFATFHVKQ 58
          + R+D+V  I+  ++  L +K+    V   F+ I D        G+ + IS F TF +K+
Sbjct: 1  MKRADIVNKIARNEKITLDKKEIATIVNETFDLISDYLTNDIHEGKKVMISGFGTFVIKK 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          + S++GRN +T +E  I  R  + FK   +LKK++ 
Sbjct: 61 RKSKIGRNPKTGEEKLIPDRLGITFKPGKLLKKKVN 96


>gi|145629383|ref|ZP_01785181.1| integration host factor alpha-subunit [Haemophilus influenzae
          22.1-21]
 gi|144978226|gb|EDJ87990.1| integration host factor alpha-subunit [Haemophilus influenzae
          22.1-21]
          Length = 91

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+ D+++ +S ++ LS++D+   V     EI  S   G+ +K+S F  F ++ K SR 
Sbjct: 3  TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRSSLESGQDVKLSGFGNFELRDKSSRP 62

Query: 64 GRNLQ 68
          GRN +
Sbjct: 63 GRNPK 67


>gi|70724874|ref|YP_257083.1| hypothetical protein pSG2GP_12 [Sodalis glossinidius]
 gi|85060469|ref|YP_456169.1| DNA-binding protein [Sodalis glossinidius str. 'morsitans']
 gi|68697091|emb|CAI59372.1| hypothetical protein pSG2.12 [Sodalis glossinidius]
 gi|68697121|emb|CAI59586.1| hypothetical protein pSG2.12 [Sodalis glossinidius]
 gi|84780989|dbj|BAE75764.1| DNA-binding protein [Sodalis glossinidius str. 'morsitans']
          Length = 78

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 37/66 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+ ++ ++  +++  +   V+     I ++   GE++ +S F  F VK++  R G
Sbjct: 1  MNKSDLINAVIEKSDITQVKAGYVVSAFVAAITEALAAGESVALSGFGVFGVKERAERSG 60

Query: 65 RNLQTN 70
          RN QT 
Sbjct: 61 RNPQTG 66


>gi|327313608|ref|YP_004329045.1| DNA-binding protein HU [Prevotella denticola F0289]
 gi|326944716|gb|AEA20601.1| DNA-binding protein HU [Prevotella denticola F0289]
          Length = 97

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 46/92 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + +  ++   G ++ +S + V T+   +  S   GE + IS F TF VK++  RV 
Sbjct: 1  MNNKEFIAELALRTGYTQDESLKMVRTVIEMMGKSFETGEPVSISGFGTFEVKKRLERVM 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N  T   + + P+ V+ FK ++ +K ++   
Sbjct: 61 VNPSTGLRMLVPPKLVLNFKPAANIKGQVRKG 92


>gi|319956531|ref|YP_004167794.1| histone family protein DNA-binding protein [Nitratifractor
          salsuginis DSM 16511]
 gi|319418935|gb|ADV46045.1| histone family protein DNA-binding protein [Nitratifractor
          salsuginis DSM 16511]
          Length = 90

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D +  ++++ GLS+KD+   +      I ++  R E +    F +F   +K  R  
Sbjct: 1  MKKTDFIAEVAQKSGLSKKDTEAVIDAALETITEALKRRENVSFLGFGSFQAVKKNEREI 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
              T ++VK+  +  V FK   +LK+ + 
Sbjct: 61 TIPGTTRKVKVPAKYSVRFKPGKLLKEAVE 90


>gi|294674943|ref|YP_003575559.1| HU family DNA-binding protein [Prevotella ruminicola 23]
 gi|294472674|gb|ADE82063.1| DNA-binding protein, HU family [Prevotella ruminicola 23]
          Length = 90

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 41/71 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV+ I+   G+S+ D+ + +      I D+ V+G+ + +  F TF V ++ +R G
Sbjct: 1  MNKTELVEKIAASAGISKVDAKKALDATVVAIKDALVKGDKVALVGFGTFSVNERPAREG 60

Query: 65 RNLQTNQEVKI 75
           N  T Q++ I
Sbjct: 61 INPLTKQKITI 71


>gi|288928445|ref|ZP_06422292.1| DNA-binding protein HU [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331279|gb|EFC69863.1| DNA-binding protein HU [Prevotella sp. oral taxon 317 str. F0108]
          Length = 94

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63
          +T++D++  I+ + G+ +KD +  V +    I  S + + + + +  F +F +K + ++ 
Sbjct: 1  MTKADIINEIAIQTGIQKKDVSVVVESFMETIKGSLLDKKDNVYLRGFGSFIIKHRAAKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           RN+  N  + I    +  FK +    + +  +
Sbjct: 61 ARNIAKNTTITIAAHDLPCFKPAKSFVESMRGE 93


>gi|281425615|ref|ZP_06256528.1| DNA-binding protein HU [Prevotella oris F0302]
 gi|299140821|ref|ZP_07033959.1| DNA-binding protein HU [Prevotella oris C735]
 gi|281400202|gb|EFB31033.1| DNA-binding protein HU [Prevotella oris F0302]
 gi|298577787|gb|EFI49655.1| DNA-binding protein HU [Prevotella oris C735]
          Length = 93

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63
          +T++D++  I+   G+ ++D T  V +    I +S   + E + +  F +F +K + ++ 
Sbjct: 1  MTKADIINEIAMATGVQKRDVTVVVESFMETIKNSLLEKKENVYLRGFGSFVIKHRAAKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           RN+  N  + I+   +  FK S    +++ ++
Sbjct: 61 ARNILKNTTMTIEAHDLPSFKPSKSFIEQMKNE 93


>gi|220914453|ref|YP_002489762.1| histone family protein DNA-binding protein [Arthrobacter
          chlorophenolicus A6]
 gi|219861331|gb|ACL41673.1| histone family protein DNA-binding protein [Arthrobacter
          chlorophenolicus A6]
          Length = 95

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K   RS+LV  ++ + G S+      +  LF     S   GE I I  +       + 
Sbjct: 1  MAK--NRSELVAEVAGKAGTSQAAVNTVLDALFEVFETSVAAGEKITIPGWLAVERTDRA 58

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +R GRN QT + ++I     V   A S LK  + +
Sbjct: 59 ARTGRNPQTGETIQIAAGHSVKLTAGSKLKAAVSN 93


>gi|160915098|ref|ZP_02077311.1| hypothetical protein EUBDOL_01106 [Eubacterium dolichum DSM 3991]
 gi|158432897|gb|EDP11186.1| hypothetical protein EUBDOL_01106 [Eubacterium dolichum DSM 3991]
          Length = 94

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 45/75 (60%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS+ + +  L +S++++  +++KD+   V T+F EI     +G  ++IS F  F V ++ 
Sbjct: 1  MSEILNKKALAESLAEKLEMTKKDAGVAVDTVFEEITAILAKGGKVEISGFGKFEVAERP 60

Query: 61 SRVGRNLQTNQEVKI 75
           R+G N  T +++KI
Sbjct: 61 ERMGINPATKEQIKI 75


>gi|260592453|ref|ZP_05857911.1| SPBc2 prophage-derived DNA-binding protein HU2 [Prevotella
          veroralis F0319]
 gi|260535499|gb|EEX18116.1| SPBc2 prophage-derived DNA-binding protein HU2 [Prevotella
          veroralis F0319]
          Length = 97

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 48/92 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + +  ++   G ++ +S + V  + +++  S   G+A+ +S F TF VK++  RV 
Sbjct: 1  MNNKEFIAELASRTGHTQDESQKMVKAVIDQMAKSFETGDAVPVSGFGTFEVKKRLERVM 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N  T   + + P+ V+ FK ++ +K ++   
Sbjct: 61 VNPSTGLRMLVPPKLVLNFKPAATIKGQVRKG 92


>gi|331703408|ref|YP_004400095.1| DNA binding protein HU [Mycoplasma mycoides subsp. capri LC str.
          95010]
 gi|256383641|gb|ACU78211.1| DNA-binding protein HU [Mycoplasma mycoides subsp. capri str.
          GM12]
 gi|256384472|gb|ACU79041.1| DNA-binding protein HU [Mycoplasma mycoides subsp. capri str.
          GM12]
 gi|296455617|gb|ADH21852.1| DNA-binding protein HU [synthetic Mycoplasma mycoides
          JCVI-syn1.0]
 gi|328801963|emb|CBW54117.1| DNA binding protein HU [Mycoplasma mycoides subsp. capri LC str.
          95010]
          Length = 90

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +L++ I     +S+ D+ + V  +F  I    + G+ + ++ F  F + ++ SR G
Sbjct: 1  MTKKELIEEIIINENISKVDAEKVVNRIFQTISKHLIDGKEVSVAGFGKFVISERASREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T +++ I   R   FK +  LK+ +
Sbjct: 61 VNPSTGEKIVIPASRSARFKPAKQLKESL 89


>gi|116672458|ref|YP_833391.1| histone family protein DNA-binding protein [Arthrobacter sp.
          FB24]
 gi|116612567|gb|ABK05291.1| histone family protein DNA-binding protein [Arthrobacter sp.
          FB24]
          Length = 94

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K   RS+LV  ++ + G S+      +  LF     S   GE I I  +       + 
Sbjct: 1  MAK--NRSELVAEVAGKAGTSQAAVNSVLDALFEVFETSVAAGEKITIPGWLAVERTDRA 58

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +R GRN QT + ++I     V   A S LK  +  
Sbjct: 59 ARTGRNPQTGETIQIAAGHSVKLTAGSKLKAAVSK 93


>gi|298374475|ref|ZP_06984433.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
 gi|298268843|gb|EFI10498.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
          Length = 95

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +LVK+++ +  +++ ++ RFV        ++     ++ +  F TF   ++  R+G
Sbjct: 1  MNRRELVKTLADKLSVTQAEAMRFVQAWEETTTEALESDGSLMLLGFGTFSAWEQTERIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN +      I  R+ V FK   +L K++ 
Sbjct: 61 RNPKNGVAYMIRARKSVKFKPGKLLLKQLN 90


>gi|91777072|ref|YP_546828.1| histone-like DNA-binding protein [Methylobacillus flagellatus KT]
 gi|91711059|gb|ABE50987.1| histone-like DNA-binding protein [Methylobacillus flagellatus KT]
          Length = 90

 Score = 96.1 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+LV  I K    S   +   +  L + + +   RG  + +       V ++ +R G
Sbjct: 1  MKKSELVALI-KPANTSAAVTESILDALGSVVQEQLARGGEVTLPGIGKLSVTERAARAG 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + + I+ ++   F A+  LK  +  
Sbjct: 60 RNPRTGEIIPIEAKKTPKFSAAKALKDAVNG 90


>gi|46579547|ref|YP_010355.1| DNA-binding protein HU subunit beta [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|46448962|gb|AAS95614.1| DNA-binding protein HU, beta subunit [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|311233363|gb|ADP86217.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris RCH1]
          Length = 95

 Score = 96.1 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 5/94 (5%)

Query: 5  ITRSDLVKSIS---KEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          + R +LV ++    +  G  ++R+D  R +    +      + G  + +         ++
Sbjct: 1  MNRKELVSAVQNTLERTGCKITRRDVERTLDVFGDVAAAELLEGGDVPLPVLGKLRSVER 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           +R GRN +T + + I  RRVV FKA   L++ +
Sbjct: 61 AARAGRNPRTGESIAIPARRVVTFKAGKDLREAL 94


>gi|15828558|ref|NP_325918.1| DNA-binding protein HU [Mycoplasma pulmonis UAB CTIP]
 gi|14089500|emb|CAC13260.1| DNA-BINDING PROTEIN HU [Mycoplasma pulmonis]
          Length = 126

 Score = 96.1 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 49/92 (53%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KT+T+ + ++ IS+   +S++D    + ++   I +S +  E + I    TF  K K +R
Sbjct: 34  KTMTKKEFMQKISEHSFISQRDVEAIINSMVFVIKESLISEEKVTIPMLGTFETKIKAAR 93

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            G    T +++ I  +RVV FK +  +K+ + 
Sbjct: 94  EGIKFTTGEKILIPEKRVVKFKPTKYIKEVVN 125


>gi|330995026|ref|ZP_08318945.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1]
 gi|329757915|gb|EGG74440.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1]
          Length = 91

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 43/88 (48%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          +DLV  I+     S+ D+ + +  L   +  +A  G+ I + +F  F V++  +R GRN 
Sbjct: 4  ADLVDHIATTTDTSKTDTRKVLDALIEAMTAAAKAGDEITLPNFGKFKVREVAAREGRNP 63

Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95
           T   ++I   R + F  +  LK  + D
Sbjct: 64 ATGATIQIAASRKLAFTPAKALKDSLND 91


>gi|42560949|ref|NP_975400.1| DNA-binding protein HU (HB) [Mycoplasma mycoides subsp. mycoides
          SC str. PG1]
 gi|83320061|ref|YP_424544.1| DNA-binding protein HU 1 [Mycoplasma capricolum subsp. capricolum
          ATCC 27343]
 gi|42492446|emb|CAE77042.1| DNA-binding protein HU (HB) [Mycoplasma mycoides subsp. mycoides
          SC str. PG1]
 gi|83283947|gb|ABC01879.1| DNA-binding protein HU 1 [Mycoplasma capricolum subsp. capricolum
          ATCC 27343]
 gi|301321355|gb|ADK69998.1| DNA-binding protein HU [Mycoplasma mycoides subsp. mycoides SC
          str. Gladysdale]
          Length = 90

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +L++ I     +S+ D+ + V  +F  I    + G+ + ++ F  F + ++ SR G
Sbjct: 1  MTKKELIEEIIINENISKVDAEKVVNRIFQTISKHLIEGKEVSVAGFGKFVISERSSREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T +++ I   R   FK +  LK+ +
Sbjct: 61 VNPSTGEKIIIPASRSARFKPAKQLKESL 89


>gi|261879346|ref|ZP_06005773.1| DNA-binding protein HU [Prevotella bergensis DSM 17361]
 gi|270334049|gb|EFA44835.1| DNA-binding protein HU [Prevotella bergensis DSM 17361]
          Length = 94

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA-IKISSFATFHVKQKGSRV 63
          + ++ L+ +++ +  +S+ ++  +V TL   I D+   G+  + I  F  F +KQ   R 
Sbjct: 1  MNKTQLIAALASKTEISKANAATYVNTLLGIIADNLCEGDREVAIPDFGRFFIKQLAERQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSIL 89
          G N  T + + I  R  V F AS  L
Sbjct: 61 GVNPATGERITIAAREKVAFNASDNL 86


>gi|298480649|ref|ZP_06998845.1| DNA-binding protein HU [Bacteroides sp. D22]
 gi|298273083|gb|EFI14648.1| DNA-binding protein HU [Bacteroides sp. D22]
          Length = 93

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 42/92 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L+  I+++ G+ +      V      + +S V G  + +  F +F +K++  RV 
Sbjct: 1  MTKAELITRIAQQSGIEKTIVMTVVEAFMENVKESMVAGNDVFLRGFGSFVIKRRAKRVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN+  N  + +       FK +      + + 
Sbjct: 61 RNISENTTIVVPAHFFPAFKPAKTFLNAVKEG 92


>gi|218249932|ref|YP_002374755.1| small DNA-binding protein Hbb [Borrelia burgdorferi ZS7]
 gi|223888785|ref|ZP_03623376.1| DNA-binding protein HU [Borrelia burgdorferi 64b]
 gi|226321550|ref|ZP_03797076.1| DNA-binding protein HU [Borrelia burgdorferi Bol26]
 gi|134104949|pdb|2NP2|A Chain A, Hbb-Dna Complex
 gi|134104950|pdb|2NP2|B Chain B, Hbb-Dna Complex
 gi|1280531|gb|AAC73070.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|1280535|gb|AAC73072.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|1372991|gb|AAB41460.1| Hbb [Borrelia burgdorferi]
 gi|1372994|gb|AAB41461.1| Hbb [Borrelia burgdorferi]
 gi|73762240|gb|AAZ83608.1| Hbb [Borrelia burgdorferi]
 gi|89145706|gb|ABD62042.1| Hbb [Borrelia burgdorferi 297]
 gi|89145708|gb|ABD62043.1| Hbb [Borrelia burgdorferi]
 gi|218165120|gb|ACK75181.1| small DNA-binding protein Hbb [Borrelia burgdorferi ZS7]
 gi|223885601|gb|EEF56700.1| DNA-binding protein HU [Borrelia burgdorferi 64b]
 gi|226232739|gb|EEH31492.1| DNA-binding protein HU [Borrelia burgdorferi Bol26]
          Length = 108

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  I+         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   VTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|312131596|ref|YP_003998936.1| histone family protein DNA-binding protein [Leadbetterella
          byssophila DSM 17132]
 gi|311908142|gb|ADQ18583.1| histone family protein DNA-binding protein [Leadbetterella
          byssophila DSM 17132]
          Length = 96

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 45/93 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++++  IS++ G+ +  ++  +   F  + +    GEAI +  F +F  K++  +  
Sbjct: 1  MTKAEVISIISEKTGVDKAATSATIEAFFETVKEQLSGGEAIYVRGFGSFVNKKRAEKKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          RN+     V +    +  FK S    + +  ++
Sbjct: 61 RNISKKTTVTVPAHYIPSFKPSKEFVEEVKKNV 93


>gi|262408098|ref|ZP_06084646.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_22]
 gi|294809492|ref|ZP_06768195.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b]
 gi|298484174|ref|ZP_07002340.1| HimA protein [Bacteroides sp. D22]
 gi|262354906|gb|EEZ03998.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_22]
 gi|294443310|gb|EFG12074.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b]
 gi|295084185|emb|CBK65708.1| Bacterial nucleoid DNA-binding protein [Bacteroides xylanisolvens
          XB1A]
 gi|298269678|gb|EFI11273.1| HimA protein [Bacteroides sp. D22]
          Length = 92

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 45/89 (50%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+   +    +++  G + KD++  + +L + +      G  I +  F +F VK+K  R+
Sbjct: 2  TMNNKEFTSELAERLGYTIKDTSELIGSLLSSMTQELEEGNVIAVQGFGSFEVKKKAERI 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
            N  + Q + + P+ V+ ++ S+ LK +
Sbjct: 62 SINPASKQRMLVPPKLVLSYRPSNTLKDK 90


>gi|260912465|ref|ZP_05919002.1| DNA-binding protein HU [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633437|gb|EEX51590.1| DNA-binding protein HU [Prevotella sp. oral taxon 472 str. F0295]
          Length = 93

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63
          +T++D++  I+ + G+ +KD +  V +    I  S + + + + +  F +F +K + ++ 
Sbjct: 1  MTKADIINEIAIQTGIQKKDVSVVVESFMETIKGSLLDKKDNVYLRGFGSFIIKHRAAKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           RN+  N  + I    +  FK +    + +  +
Sbjct: 61 ARNIAKNTTITIAAHDLPCFKPAKSFVESMRGE 93


>gi|318606261|emb|CBY27759.1| integration host factor beta subunit [Yersinia enterocolitica
          subsp. palearctica Y11]
          Length = 66

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          +   +  +   GE I+I  F +F +  +  RVGRN +T  +V+++ + V  FK    L+ 
Sbjct: 1  MLEHMAGTLAEGERIEIRGFGSFSLHYRAPRVGRNPKTGAKVELEGKYVPHFKPGKELRD 60

Query: 92 RIM 94
          R  
Sbjct: 61 RAN 63


>gi|163783706|ref|ZP_02178693.1| integration host factor beta subunit [Hydrogenivirga sp.
          128-5-R1-1]
 gi|159881031|gb|EDP74548.1| integration host factor beta subunit [Hydrogenivirga sp.
          128-5-R1-1]
          Length = 94

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SD+ K I+K  G+S++ +   V  +F  + ++  RGE ++I    TF +K+K SR  
Sbjct: 1  MKKSDITKEIAKRRGISQRKARIIVDQIFQAMAEALTRGEKVEIRGLGTFKIKKKPSRFV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          ++ +T  E+ +  R V  FK   ++K  +    R
Sbjct: 61 KDPRTGVEIFVKERYVPTFKMGKLIKNHLNSKGR 94


>gi|296115319|ref|ZP_06833958.1| putative DNA binding protein [Gluconacetobacter hansenii ATCC
          23769]
 gi|295978142|gb|EFG84881.1| putative DNA binding protein [Gluconacetobacter hansenii ATCC
          23769]
          Length = 91

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 44/88 (50%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          +DLV  I+     S+ D+ + +  L + +  +A  G+ I + +F  F VK+  +R GRN 
Sbjct: 4  ADLVDHIATTTDTSKTDTRKVLDALIDTMTAAAKTGDEITLPNFGKFKVKEVAAREGRNP 63

Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95
           T   ++I   R + F  +  LK  + D
Sbjct: 64 ATGATIQIAASRKLTFTPAKALKDSLND 91


>gi|330814088|ref|YP_004358327.1| integration host factor alpha subunit [Candidatus Pelagibacter
          sp. IMCC9063]
 gi|327487183|gb|AEA81588.1| integration host factor alpha subunit [Candidatus Pelagibacter
          sp. IMCC9063]
          Length = 100

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/96 (43%), Positives = 57/96 (59%), Gaps = 2/96 (2%)

Query: 1  MSK--TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          MSK   ITR  L   + +E GLS+   + FV TLF+ +  +  + + +KI+ F TF  K 
Sbjct: 1  MSKVENITRQKLYDLVFQELGLSKISCSAFVDTLFDSLIANLKKDKKVKIALFGTFSKKN 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          K SRVGRN +T +E  I  R VV FKAS +L K+I 
Sbjct: 61 KKSRVGRNPKTKEEKTISSRNVVTFKASKLLIKKIN 96


>gi|295085994|emb|CBK67517.1| Bacterial nucleoid DNA-binding protein [Bacteroides xylanisolvens
          XB1A]
          Length = 95

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 46/85 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D++  +S+E G+ R+     + +    + D+  R  ++ +  F TF +K++ ++  
Sbjct: 1  MTKADIINRVSEELGIDRRTVGLVIESFMKCVKDALGRERSVFLRGFGTFSLKKRAAKKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          +N+Q +  + I  R+V  FK S   
Sbjct: 61 QNIQQHTTICIPARKVPHFKPSESF 85


>gi|325300026|ref|YP_004259943.1| histone family protein DNA-binding protein [Bacteroides
          salanitronis DSM 18170]
 gi|324319579|gb|ADY37470.1| histone family protein DNA-binding protein [Bacteroides
          salanitronis DSM 18170]
          Length = 91

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 39/85 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++++V  I++  G+ R+     +    N +  S    E + +  F +F VK++  +  
Sbjct: 1  MTKAEIVNEIARNTGIDRQTVLTTLEAFMNSVKTSLSNDENVYLRGFGSFIVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  + I    +  FK +   
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85


>gi|284988917|ref|YP_003407471.1| histone family protein DNA-binding protein [Geodermatophilus
          obscurus DSM 43160]
 gi|284062162|gb|ADB73100.1| histone family protein DNA-binding protein [Geodermatophilus
          obscurus DSM 43160]
          Length = 94

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 44/88 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV +I+K   +        +T L +E+ D+  RGE + +S   T    Q+ +R G
Sbjct: 1  MNKAELVSAIAKRADVPTSTVDSVLTGLQDELVDAITRGEKVAVSGLLTVERTQRSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN QT + + I     V   A S LKK 
Sbjct: 61 RNPQTGESIDIPAANTVKVTAGSNLKKA 88


>gi|146307673|ref|YP_001188138.1| histone family protein DNA-binding protein [Pseudomonas mendocina
          ymp]
 gi|145575874|gb|ABP85406.1| histone family protein DNA-binding protein [Pseudomonas mendocina
          ymp]
          Length = 92

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 38/91 (41%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           IT+  L+  +++   L +      +  L   + D+      I +       V ++ +R 
Sbjct: 2  AITKDQLIGDLAEAVDLPKSTVRALLDQLGEIVSDALENDGEITLPGVGKLKVSERPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN QT + ++I  ++VV    +  L   + 
Sbjct: 62 GRNPQTGKAIEIAAKKVVKLVPAKALTDALN 92


>gi|298292191|ref|YP_003694130.1| histone family protein DNA-binding protein [Starkeya novella DSM
          506]
 gi|296928702|gb|ADH89511.1| histone family protein DNA-binding protein [Starkeya novella DSM
          506]
          Length = 92

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+++LV +++++  L++  +   V   F+ I  S   GE +K+  F +F V  + +R GR
Sbjct: 3  TKNELVAAVAEQAKLTKAAAAAAVDATFDAIAASLKAGEEVKLIGFGSFSVVTRAAREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N +T + VKI+  +   F     LK+ +  
Sbjct: 63 NPRTGKPVKIEASKAPKFTPGKGLKETVNG 92


>gi|282890554|ref|ZP_06299077.1| hypothetical protein pah_c022o145 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499551|gb|EFB41847.1| hypothetical protein pah_c022o145 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 102

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+  L+ SI++E  +   D    +    + + ++   GE ++   F  F V ++  ++
Sbjct: 10  TMTKKKLINSIAQEKQIHPNDVRNVIQAFLDRMTEALAEGERLEFRDFGVFEVVERKQKI 69

Query: 64  GRNLQTNQ-EVKIDPRRVVVFKASSILKKRIMD 95
           GRN +     + I  R  V F     ++K I  
Sbjct: 70  GRNPKNAAVPIIIPARSAVKFTPGKKMRKLIEK 102


>gi|291515896|emb|CBK65106.1| Bacterial nucleoid DNA-binding protein [Alistipes shahii WAL
          8301]
          Length = 90

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 40/90 (44%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +      V      I  S  +   + +  F +F VK++  +V 
Sbjct: 1  MTKADIVSEIAKSTGVEKVQVQAIVEAFMESIKTSLTQKNNVYLRGFGSFIVKKRAKKVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN+  N  + I    +  FK +     ++ 
Sbjct: 61 RNISKNTTITIPEHNIPAFKPAKSFAAKVK 90


>gi|154250962|ref|YP_001411786.1| histone family DNA-binding protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154154912|gb|ABS62129.1| histone family protein DNA-binding protein [Parvibaculum
           lavamentivorans DS-1]
          Length = 113

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 45/86 (52%)

Query: 8   SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
           S L+  I+++  LS+K +T   +        +  +G  ++++      V+++ +R+GRN 
Sbjct: 28  SKLIAEIAEKHDLSKKAATELFSDFVELTVKNLKKGNKVRLTGLGILQVRKRAARMGRNP 87

Query: 68  QTNQEVKIDPRRVVVFKASSILKKRI 93
            T + +KI   + V F+ +  LK+ I
Sbjct: 88  ATGEAIKIKASKKVAFRVAKDLKEAI 113


>gi|124007394|ref|ZP_01692101.1| DNA-binding protein HU [Microscilla marina ATCC 23134]
 gi|123987227|gb|EAY26967.1| DNA-binding protein HU [Microscilla marina ATCC 23134]
          Length = 105

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 52/102 (50%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+++++  I+++ G+ +      V   F  I +S   GE I +  F +F  K++ +++ 
Sbjct: 1   MTKAEVISEIAEKTGVEKDKVQITVEAFFKVIQNSMENGENIYVRGFGSFINKKRATKIA 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
           RN+  N+ + I    V  FK S +  +RI +  + +    D+
Sbjct: 61  RNISKNKAMTIPEHYVPSFKPSKVFIERIKNSAKLKAKISDN 102


>gi|111115057|ref|YP_709675.1| hbbU protein [Borrelia afzelii PKo]
 gi|216263785|ref|ZP_03435779.1| small DNA-binding protein Hbb [Borrelia afzelii ACA-1]
 gi|3913406|sp|Q57220|DBH_BORAF RecName: Full=DNA-binding protein HBbu
 gi|1280571|gb|AAC73093.1| histone-like protein HBbu [Borrelia afzelii]
 gi|1280575|gb|AAC73095.1| histone-like protein HBbu [Borrelia afzelii]
 gi|1280577|gb|AAC73096.1| histone-like protein HBbu [Borrelia afzelii]
 gi|1280579|gb|AAC73097.1| histone-like protein HBbu [Borrelia afzelii]
 gi|1280581|gb|AAC73098.1| histone-like protein HBbu [Borrelia afzelii]
 gi|73762244|gb|AAZ83610.1| Hbb [Borrelia afzelii]
 gi|110890331|gb|ABH01499.1| hbbU protein [Borrelia afzelii PKo]
 gi|215979829|gb|EEC20651.1| small DNA-binding protein Hbb [Borrelia afzelii ACA-1]
 gi|313184941|gb|ADR50035.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184947|gb|ADR50038.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184949|gb|ADR50039.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184951|gb|ADR50040.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184953|gb|ADR50041.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184955|gb|ADR50042.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184957|gb|ADR50043.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184959|gb|ADR50044.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184961|gb|ADR50045.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184963|gb|ADR50046.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184965|gb|ADR50047.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184967|gb|ADR50048.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184969|gb|ADR50049.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184971|gb|ADR50050.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184973|gb|ADR50051.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184975|gb|ADR50052.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184977|gb|ADR50053.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   VTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|310817243|ref|YP_003965207.1| DNA-binding protein HU, form N [Ketogulonicigenium vulgare Y25]
 gi|308755978|gb|ADO43907.1| DNA-binding protein HU, form N [Ketogulonicigenium vulgare Y25]
          Length = 95

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 45/94 (47%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+  +T++ LV ++++  G  +K +   +  L   I D    G A+ +     F+ +++ 
Sbjct: 1  MANQMTKTQLVAALAEATGTDKKAAGAAIEALGKIITDEVAAGGAVTLPGVGKFYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +RV RN +TN+  +    + V    +  LK  + 
Sbjct: 61 ARVVRNPRTNESHEKPADKAVKVTVAKALKDSVN 94


>gi|312148159|gb|ADQ30818.1| DNA-binding protein HU [Borrelia burgdorferi JD1]
          Length = 108

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   VTKSDIVDQISLNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKVLDHNVAYFRPGKDLKERVWG 105


>gi|325284314|ref|YP_004256854.1| histone family protein DNA-binding protein [Deinococcus
           proteolyticus MRP]
 gi|324316378|gb|ADY27491.1| histone family protein DNA-binding protein [Deinococcus
           proteolyticus MRP]
          Length = 128

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 48/89 (53%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S  + ++ L+  +S + GL+R+ ++    +L + + ++   G+ + +    TF +K+  +
Sbjct: 37  SGKMGKTALIAELSSKTGLTRQQASGVTDSLLSTVVEALQAGQTVSLPGLGTFSIKETAA 96

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
           R G    T ++++I   + V FK ++ LK
Sbjct: 97  RTGVKPGTTEKIQIPAGKKVAFKVATGLK 125


>gi|319902105|ref|YP_004161833.1| histone family protein DNA-binding protein [Bacteroides
          helcogenes P 36-108]
 gi|319417136|gb|ADV44247.1| histone family protein DNA-binding protein [Bacteroides
          helcogenes P 36-108]
          Length = 90

 Score = 95.4 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 47/88 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   +    +S++ G + KD++  V +L +++      G  + +  F TF VK+K  R+ 
Sbjct: 1  MNNKEFTSELSRKLGYTLKDTSELVASLLSDMTRQLEEGNIVSVQGFGTFEVKKKAERIS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
           N  T Q + + P+ V+ +K S++LK +
Sbjct: 61 VNPNTKQRMLVPPKLVLTYKPSTLLKDK 88


>gi|1280587|gb|AAC73092.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|89145738|gb|ABD62058.1| Hbb [Borrelia genomosp. 2]
          Length = 108

 Score = 95.4 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   VTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|89145728|gb|ABD62053.1| Hbb [Borrelia californiensis]
 gi|89145730|gb|ABD62054.1| Hbb [Borrelia californiensis]
 gi|89145732|gb|ABD62055.1| Hbb [Borrelia californiensis]
          Length = 108

 Score = 95.4 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  IS         L +K     +   F E+  +      ++  SF TF V+++
Sbjct: 9   VTKSDIVDQISLNIRNSNLKLEKKYIRLVIDAFFEELKSNLCSNNVVEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + V++    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVRVLDHHVAYFRPGKDLKERVWG 105


>gi|220922907|ref|YP_002498209.1| histone family protein DNA-binding protein [Methylobacterium
           nodulans ORS 2060]
 gi|219947514|gb|ACL57906.1| histone family protein DNA-binding protein [Methylobacterium
           nodulans ORS 2060]
          Length = 113

 Score = 95.4 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 2/97 (2%)

Query: 5   ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + R+ L++ I++    L    +   V T+ + + ++ V+ E I +  F TF    +G+R 
Sbjct: 1   MVRAQLIQRIAELNPHLRPGVAEAVVRTILDRMGEALVQEERIALRGFGTFKTNARGAR- 59

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           G N +T + V +  RR V F+AS+ +  R+ D + G 
Sbjct: 60  GHNPRTGEAVAVPARRDVRFRASTEMLHRLNDKVGGA 96


>gi|224531945|ref|ZP_03672577.1| DNA-binding protein HU [Borrelia valaisiana VS116]
 gi|1280583|gb|AAC73090.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|1280585|gb|AAC73091.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|89145740|gb|ABD62059.1| Hbb [Borrelia valaisiana]
 gi|89145742|gb|ABD62060.1| Hbb [Borrelia valaisiana]
 gi|186966720|gb|ACC96221.1| histone-like protein HBbu [Borrelia sp. QSDS4]
 gi|186966722|gb|ACC96222.1| histone-like protein HBbu [Borrelia sp. QTMP2]
 gi|186966724|gb|ACC96223.1| histone-like protein HBbu [Borrelia sp. QSYSP4]
 gi|186966726|gb|ACC96224.1| histone-like protein HBbu [Borrelia sp. QSYSP3]
 gi|186966728|gb|ACC96225.1| histone-like protein HBbu [Borrelia sp. QLZSP1]
 gi|224511410|gb|EEF81816.1| DNA-binding protein HU [Borrelia valaisiana VS116]
 gi|313185123|gb|ADR50126.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185125|gb|ADR50127.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185129|gb|ADR50129.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185131|gb|ADR50130.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185133|gb|ADR50131.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185135|gb|ADR50132.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185137|gb|ADR50133.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185139|gb|ADR50134.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185141|gb|ADR50135.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185147|gb|ADR50138.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185149|gb|ADR50139.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           IT+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|255693886|ref|ZP_05417561.1| HimA protein [Bacteroides finegoldii DSM 17565]
 gi|260620291|gb|EEX43162.1| HimA protein [Bacteroides finegoldii DSM 17565]
          Length = 90

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 43/88 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   +    +++  G + KD++  + +L   +      G  I +  F +F VK+K  R+ 
Sbjct: 1  MNNKEFTSELAERLGYTIKDTSELINSLLASMTQELEEGNMIAVQGFGSFEVKKKAERIS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
           N  + Q + + P+ V+ ++ S+ LK +
Sbjct: 61 INPASKQRMLVPPKLVLSYRPSNTLKDK 88


>gi|160889023|ref|ZP_02070026.1| hypothetical protein BACUNI_01443 [Bacteroides uniformis ATCC
          8492]
 gi|270293860|ref|ZP_06200062.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317479304|ref|ZP_07938439.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36]
 gi|156861490|gb|EDO54921.1| hypothetical protein BACUNI_01443 [Bacteroides uniformis ATCC
          8492]
 gi|270275327|gb|EFA21187.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316904592|gb|EFV26411.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36]
          Length = 91

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 39/85 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +      V    + +  S  + E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEITKNTGIDKTTVLTTVEAFMDAVKASLSKDENVYLRGFGSFVVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  + I    +  FK +   
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85


>gi|238763340|ref|ZP_04624304.1| Integration host factor subunit beta [Yersinia kristensenii ATCC
          33638]
 gi|238698439|gb|EEP91192.1| Integration host factor subunit beta [Yersinia kristensenii ATCC
          33638]
          Length = 69

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 33/66 (50%)

Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88
          +  +   +  +   GE I+I  F +F +  +  RVGRN +T  +V+++ + V  FK    
Sbjct: 1  MKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRVGRNPKTGDKVELEGKYVPHFKPGKE 60

Query: 89 LKKRIM 94
          L+ R  
Sbjct: 61 LRDRAN 66


>gi|150006582|ref|YP_001301326.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482]
 gi|212691238|ref|ZP_03299366.1| hypothetical protein BACDOR_00729 [Bacteroides dorei DSM 17855]
 gi|237712330|ref|ZP_04542811.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA]
 gi|237726466|ref|ZP_04556947.1| DNA-binding protein HU [Bacteroides sp. D4]
 gi|254881516|ref|ZP_05254226.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA]
 gi|265752041|ref|ZP_06087834.1| DNA-binding protein HU [Bacteroides sp. 3_1_33FAA]
 gi|294775457|ref|ZP_06740970.1| DNA-binding protein HU [Bacteroides vulgatus PC510]
 gi|319642901|ref|ZP_07997537.1| DNA-binding protein HU [Bacteroides sp. 3_1_40A]
 gi|149935006|gb|ABR41704.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482]
 gi|212666470|gb|EEB27042.1| hypothetical protein BACDOR_00729 [Bacteroides dorei DSM 17855]
 gi|229434992|gb|EEO45069.1| DNA-binding protein HU [Bacteroides dorei 5_1_36/D4]
 gi|229453651|gb|EEO59372.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA]
 gi|254834309|gb|EET14618.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA]
 gi|263236833|gb|EEZ22303.1| DNA-binding protein HU [Bacteroides sp. 3_1_33FAA]
 gi|294450698|gb|EFG19185.1| DNA-binding protein HU [Bacteroides vulgatus PC510]
 gi|317385449|gb|EFV66392.1| DNA-binding protein HU [Bacteroides sp. 3_1_40A]
          Length = 91

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 40/85 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +      +    + + DS  + E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEITKNTGIDKVTVLTTLEAFMDTVKDSLSKEENVYLRGFGSFVVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  + I    +  FK +   
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85


>gi|84514971|ref|ZP_01002334.1| DNA-binding protein HU [Loktanella vestfoldensis SKA53]
 gi|84511130|gb|EAQ07584.1| DNA-binding protein HU [Loktanella vestfoldensis SKA53]
          Length = 96

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 45/94 (47%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +K +T++ LV +I+ + G+ +K +   +  +   I      G A+ +      + +++  
Sbjct: 3  TKPMTKAQLVAAIADQTGMDKKAAGAALDAVTGIITSEVAGGGAVTLPGVGKIYCRERPE 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          R+ RN  T +++K +  +VV    +  LK  +  
Sbjct: 63 RMVRNPATGEQIKKEADKVVKVTIAKALKDSVNG 96


>gi|160889558|ref|ZP_02070561.1| hypothetical protein BACUNI_01982 [Bacteroides uniformis ATCC
          8492]
 gi|270296682|ref|ZP_06202881.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317480050|ref|ZP_07939162.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36]
 gi|156861075|gb|EDO54506.1| hypothetical protein BACUNI_01982 [Bacteroides uniformis ATCC
          8492]
 gi|270272669|gb|EFA18532.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316903792|gb|EFV25634.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36]
          Length = 90

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 45/88 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   +    +S+  G + KD++  V +L  ++      G  I I  F TF VK+K  R+ 
Sbjct: 1  MNNKEFTSELSRRLGYTLKDTSELVASLLADMTRQLEEGNIISIQGFGTFEVKKKAERIS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
           N  T Q + + P+ V+ +K S++LK +
Sbjct: 61 VNPTTKQRMLVPPKLVLTYKPSTLLKDK 88


>gi|3913402|sp|Q45231|DBH_BORJA RecName: Full=DNA-binding protein HBbu
 gi|1280597|gb|AAC73099.1| histone-like protein HBbu [Borrelia japonica]
 gi|1280599|gb|AAC73100.1| histone-like protein HBbu [Borrelia japonica]
 gi|1280601|gb|AAC73101.1| histone-like protein HBbu [Borrelia japonica]
 gi|1280603|gb|AAC73102.1| histone-like protein HBbu [Borrelia japonica]
 gi|1280605|gb|AAC73103.1| histone-like protein HBbu [Borrelia japonica]
          Length = 108

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   VTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCSNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|222447026|pdb|3C4I|A Chain A, Crystal Structure Analysis Of N Terminal Region
          Containing The Dimerization Domain And Dna Binding
          Domain Of Hu Protein(Histone Like Protein-Dna Binding)
          From Mycobacterium Tuberculosis [h37rv]
 gi|222447027|pdb|3C4I|B Chain B, Crystal Structure Analysis Of N Terminal Region
          Containing The Dimerization Domain And Dna Binding
          Domain Of Hu Protein(Histone Like Protein-Dna Binding)
          From Mycobacterium Tuberculosis [h37rv]
          Length = 99

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|58699046|ref|ZP_00373888.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225629912|ref|YP_002726703.1| DNA-binding protein, HU family [Wolbachia sp. wRi]
 gi|58534440|gb|EAL58597.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225591893|gb|ACN94912.1| DNA-binding protein, HU family [Wolbachia sp. wRi]
          Length = 101

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 51/86 (59%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           +V  I++E GLS++DS   +  + +EI  S  +   +KISSF TF VK+K  R G    T
Sbjct: 16  IVGDINQEIGLSKEDSASIIDDILDEIKTSLAKDGIVKISSFGTFLVKKKKERPGNIPNT 75

Query: 70  NQEVKIDPRRVVVFKASSILKKRIMD 95
           +++V I  R  V F+ S I+KK I +
Sbjct: 76  SEKVMIQARNSVSFRPSKIIKKSINN 101


>gi|313664931|ref|YP_004046802.1| DNA-binding protein HU [Mycoplasma leachii PG50]
 gi|312949541|gb|ADR24137.1| DNA-binding protein HU [Mycoplasma leachii PG50]
          Length = 92

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  I  E  +S+K         F  I    ++ + I I  F  F V QK SR G
Sbjct: 1  MNKKELISEIVLETEVSKKTVNSIFDKTFELIAKILIKDKEISIPDFGKFVVLQKDSRKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T +++ I   +   FK +  LK+ + +
Sbjct: 61 INPKTGEQIIIPASKTAKFKPAKKLKELLTE 91


>gi|268679600|ref|YP_003304031.1| histone family protein DNA-binding protein [Sulfurospirillum
          deleyianum DSM 6946]
 gi|268617631|gb|ACZ11996.1| histone family protein DNA-binding protein [Sulfurospirillum
          deleyianum DSM 6946]
          Length = 92

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 45/92 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ ++++S++ GLS+KD+ + V      I D+ V G+ +    F TF    + +R  
Sbjct: 1  MKKAEFIQAVSEKAGLSKKDTQKAVDAALEAISDALVAGKEVSFIGFGTFSTATRAARKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          R   T++ V +     V FK    LK  +   
Sbjct: 61 RVPGTDRVVDVAKTTAVKFKVGKKLKDVVAKA 92


>gi|163782099|ref|ZP_02177098.1| DNA binding protein HU [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882631|gb|EDP76136.1| DNA binding protein HU [Hydrogenivirga sp. 128-5-R1-1]
          Length = 100

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 4/86 (4%)

Query: 5  ITRSDLVKSISKEFGLSRKDST----RFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          +T+ D+   I        + +     + V+ +F  I ++   GE ++IS F TF VK + 
Sbjct: 1  MTKKDIASLIYGRCEEEFETTKKEIYQIVSEVFEIIEETLKNGEKVQISGFGTFLVKTRK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86
           ++GRN +T +EV +  R+V+VFK S
Sbjct: 61 GKIGRNPRTGEEVPVPDRKVIVFKPS 86


>gi|10955033|ref|NP_059689.1| hypothetical protein pTi_017 [Agrobacterium tumefaciens]
 gi|1163198|gb|AAC28112.1| hupT [Agrobacterium tumefaciens]
          Length = 92

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 42/90 (46%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+ E  L++  +   V ++F +I D+A+ G    I SF  F +K    R GR
Sbjct: 3  TTNEIADKIAAEQNLTKAQAKTIVESVFKQITDAALAGAETSIPSFGKFKLKDTPEREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N  T   +KI   + + F     +K  +  
Sbjct: 63 NPATGATIKIAASKKLTFTLGKAVKDALNG 92


>gi|297516328|ref|ZP_06934714.1| transcriptional regulator HU subunit alpha [Escherichia coli
          OP50]
          Length = 63

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 33/63 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L+  I+++  LS+  +   + +    I +S   G+A+++  F TF V  +  R G
Sbjct: 1  MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60

Query: 65 RNL 67
          RN 
Sbjct: 61 RNP 63


>gi|196232747|ref|ZP_03131598.1| histone family protein DNA-binding protein [Chthoniobacter flavus
          Ellin428]
 gi|196223207|gb|EDY17726.1| histone family protein DNA-binding protein [Chthoniobacter flavus
          Ellin428]
          Length = 107

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ +LV  IS E GL +      V    + I D+  +G+ +++ +F    VK    RV
Sbjct: 3  TLTKRELVVKISNETGLVQHQVFDVVQRTLDHITDALAQGDTVELRNFGILEVKLTKPRV 62

Query: 64 GRNL-QTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN  Q      I  R  V FK+  I+++++  
Sbjct: 63 GRNPNQPGSSFVIPARATVKFKSGKIMRQKVAK 95


>gi|238795852|ref|ZP_04639365.1| Integration host factor subunit beta [Yersinia mollaretii ATCC
          43969]
 gi|238720315|gb|EEQ12118.1| Integration host factor subunit beta [Yersinia mollaretii ATCC
          43969]
          Length = 69

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 33/66 (50%)

Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88
          +  +   +  +   GE I+I  F +F +  +  RVGRN +T  +V+++ + V  FK    
Sbjct: 1  MKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRVGRNPKTGAKVELEGKYVPHFKPGKE 60

Query: 89 LKKRIM 94
          L+ R  
Sbjct: 61 LRDRAN 66


>gi|311896283|dbj|BAJ28691.1| putative DNA-binding protein Hu [Kitasatospora setae KM-6054]
          Length = 93

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV ++++   ++RKD+   +        +   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALAERAEVTRKDADAVLAAFAEITGEVVAKGDEKVTIPGFLTFERTLRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           RN QT + ++I     V   A S LK+ 
Sbjct: 61 ARNPQTGEPIQIAEGFSVKVSAGSKLKEA 89


>gi|309775495|ref|ZP_07670496.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 3_1_53]
 gi|313897383|ref|ZP_07830926.1| DNA-binding protein HU 1 [Clostridium sp. HGF2]
 gi|308916753|gb|EFP62492.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 3_1_53]
 gi|312957753|gb|EFR39378.1| DNA-binding protein HU 1 [Clostridium sp. HGF2]
          Length = 94

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 46/75 (61%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS+ + +  LV+ ++++  +++KD+T  V T+F+EI  +   G  + IS F  F + ++ 
Sbjct: 1  MSEILNKKALVEVVAEKLEMTKKDATVAVETVFDEIAKTLSEGGKVDISGFGKFEISERP 60

Query: 61 SRVGRNLQTNQEVKI 75
          +R+G N  T + ++I
Sbjct: 61 ARMGINPATKEPLEI 75


>gi|237740573|ref|ZP_04571054.1| DNA-binding protein HU [Fusobacterium sp. 2_1_31]
 gi|262067567|ref|ZP_06027179.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693]
 gi|294782350|ref|ZP_06747676.1| DNA-binding protein HU [Fusobacterium sp. 1_1_41FAA]
 gi|229422590|gb|EEO37637.1| DNA-binding protein HU [Fusobacterium sp. 2_1_31]
 gi|291378682|gb|EFE86200.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693]
 gi|294480991|gb|EFG28766.1| DNA-binding protein HU [Fusobacterium sp. 1_1_41FAA]
          Length = 92

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+ +  K + ++    +R ++ + V  +F  +  + + GE I I ++    V ++  R+
Sbjct: 1  MTKKEFAKLLFEKGVFTTRTEAEKKVDIIFETMEKTLLDGEDISIINWGKLEVVERAPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN +T +EV I  R+ V F+      +++  
Sbjct: 61 GRNPKTGEEVNIGERKSVKFRPGKAFLEKLNK 92


>gi|187918104|ref|YP_001883667.1| DNA-binding protein HbbU [Borrelia hermsii DAH]
 gi|119860952|gb|AAX16747.1| DNA-binding protein HbbU [Borrelia hermsii DAH]
          Length = 108

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  IS         L +K     V   F E+ +S      I+  SF TF ++++
Sbjct: 9   VTKSDIVDQISLNIKNSNERLEKKYIRLVVDAFFEELKNSLCLNNIIEFRSFGTFELRKR 68

Query: 60  GSRV-GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
             R   RN QT + V +D   V  F+    LK+R+ 
Sbjct: 69  KGRQNARNPQTGEYVNVDDHHVAYFRPGKDLKERVW 104


>gi|218887119|ref|YP_002436440.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris str. 'Miyazaki F']
 gi|218758073|gb|ACL08972.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris str. 'Miyazaki F']
          Length = 95

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 5  ITRSDLVKSISKEFG---LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +T+++ V ++ +      +++  + +      + + D    G  +++     F V ++ +
Sbjct: 2  LTKAEFVAALKEALPDVFVTKVSAEKAYDAFCSVLADGVANGAGVRLPGVGAFSVTERAA 61

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          R GRN QT Q + I  R+ V F A+  L   +  
Sbjct: 62 RTGRNPQTGQSISIPARKAVKFMAAKTLVDGLNK 95


>gi|15594577|ref|NP_212366.1| hbbU protein [Borrelia burgdorferi B31]
 gi|195941414|ref|ZP_03086796.1| hbbU protein [Borrelia burgdorferi 80a]
 gi|216264191|ref|ZP_03436183.1| small DNA-binding protein Hbb [Borrelia burgdorferi 156a]
 gi|221217809|ref|ZP_03589277.1| DNA-binding protein HU [Borrelia burgdorferi 72a]
 gi|224532651|ref|ZP_03673272.1| DNA-binding protein HU [Borrelia burgdorferi WI91-23]
 gi|224533805|ref|ZP_03674393.1| DNA-binding protein HU [Borrelia burgdorferi CA-11.2a]
 gi|225549097|ref|ZP_03770072.1| DNA-binding protein HU [Borrelia burgdorferi 94a]
 gi|225550199|ref|ZP_03771159.1| DNA-binding protein HU [Borrelia burgdorferi 118a]
 gi|225552278|ref|ZP_03773218.1| DNA-binding protein HU [Borrelia sp. SV1]
 gi|226321207|ref|ZP_03796744.1| DNA-binding protein HU [Borrelia burgdorferi 29805]
 gi|3913407|sp|Q57267|DBH_BORBU RecName: Full=DNA-binding protein HU; AltName: Full=HBbu
 gi|1280537|gb|AAC73073.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|1280539|gb|AAC73074.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|1280541|gb|AAC73075.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|1280543|gb|AAC73076.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|2688124|gb|AAC66617.1| hbbU protein [Borrelia burgdorferi B31]
 gi|89145710|gb|ABD62044.1| Hbb [Borrelia burgdorferi]
 gi|89145712|gb|ABD62045.1| Hbb [Borrelia burgdorferi]
 gi|89145714|gb|ABD62046.1| Hbb [Borrelia burgdorferi]
 gi|89145716|gb|ABD62047.1| Hbb [Borrelia burgdorferi]
 gi|89145718|gb|ABD62048.1| Hbb [Borrelia burgdorferi]
 gi|89145720|gb|ABD62049.1| Hbb [Borrelia burgdorferi]
 gi|215980664|gb|EEC21471.1| small DNA-binding protein Hbb [Borrelia burgdorferi 156a]
 gi|221192486|gb|EEE18705.1| DNA-binding protein HU [Borrelia burgdorferi 72a]
 gi|224512431|gb|EEF82811.1| DNA-binding protein HU [Borrelia burgdorferi WI91-23]
 gi|224513098|gb|EEF83461.1| DNA-binding protein HU [Borrelia burgdorferi CA-11.2a]
 gi|225369311|gb|EEG98764.1| DNA-binding protein HU [Borrelia burgdorferi 118a]
 gi|225370323|gb|EEG99761.1| DNA-binding protein HU [Borrelia burgdorferi 94a]
 gi|225371276|gb|EEH00706.1| DNA-binding protein HU [Borrelia sp. SV1]
 gi|226233404|gb|EEH32148.1| DNA-binding protein HU [Borrelia burgdorferi 29805]
 gi|312149663|gb|ADQ29734.1| DNA-binding protein HU [Borrelia burgdorferi N40]
 gi|313185151|gb|ADR50140.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|1588686|prf||2209287A hbb gene
          Length = 108

 Score = 95.0 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   VTKSDIVDQISLNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|257451702|ref|ZP_05617001.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
 gi|257467010|ref|ZP_05631321.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563]
 gi|315918148|ref|ZP_07914388.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563]
 gi|317058261|ref|ZP_07922746.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
 gi|313683937|gb|EFS20772.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
 gi|313692023|gb|EFS28858.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563]
          Length = 105

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + + D +   +K   L ++ ++ + V    N + ++ V G+ +    F  F    + +R 
Sbjct: 1  MNKKDFIALFAKNAELKTKTEAEKLVAAFLNTVEETLVAGDGVAFMGFGKFETLVREART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            N +T +++ +  ++VV FKA   L +++ 
Sbjct: 61 CVNPRTKEKMNVAAKKVVRFKAGKALAEKVN 91


>gi|238749769|ref|ZP_04611274.1| Integration host factor subunit beta [Yersinia rohdei ATCC 43380]
 gi|238712424|gb|EEQ04637.1| Integration host factor subunit beta [Yersinia rohdei ATCC 43380]
          Length = 69

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 33/66 (50%)

Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88
          +  +   +  +   GE I+I  F +F +  +  RVGRN +T  +V+++ + V  FK    
Sbjct: 1  MKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRVGRNPKTGTKVELEGKYVPHFKPGKE 60

Query: 89 LKKRIM 94
          L+ R  
Sbjct: 61 LRDRAN 66


>gi|298384211|ref|ZP_06993771.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
 gi|298482997|ref|ZP_07001178.1| DNA-binding protein HU [Bacteroides sp. D22]
 gi|298262490|gb|EFI05354.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
 gi|298270741|gb|EFI12321.1| DNA-binding protein HU [Bacteroides sp. D22]
 gi|301165255|emb|CBW24826.1| Putative histone-like DNA-binding protein [Bacteroides fragilis
          638R]
          Length = 95

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 45/85 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D++  +S+E G+ R+     + +    + D+  R   + +  F TF +K++ ++  
Sbjct: 1  MTKADIINRVSEELGIDRRTVGLVIESFMKCVKDALGRERIVFLRGFGTFSLKKRAAKKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          +N+Q +  + I  R+V  FK S   
Sbjct: 61 QNIQQHTTICIPARKVPHFKPSESF 85


>gi|329960937|ref|ZP_08299216.1| DNA-binding protein HU [Bacteroides fluxus YIT 12057]
 gi|328532223|gb|EGF59027.1| DNA-binding protein HU [Bacteroides fluxus YIT 12057]
          Length = 91

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 39/85 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +      V    + +  S  + E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEITKNTGIDKVTVLTTVEAFMDAVKASLSKDENVYLRGFGSFVVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  + I    +  FK +   
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85


>gi|261415246|ref|YP_003248929.1| histone family protein DNA-binding protein [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371702|gb|ACX74447.1| histone family protein DNA-binding protein [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302327669|gb|ADL26870.1| DNA-binding protein HU [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 100

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 3/100 (3%)

Query: 5   ITRSDLVKSI--SKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + + DL++++  +KE G+ S+  + R +  + + I     +   +++  F TF VK + +
Sbjct: 1   MNKQDLIEAVLANKEAGIESKAAAARAIDAVLDGIAAGIKKDGNVQLIGFGTFTVKSRAA 60

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           R GRN QT   +KI   + V FKA + LK+    +   +K
Sbjct: 61  RTGRNPQTGATIKIKASKTVGFKAGAALKETAAKNKPAKK 100


>gi|330897792|gb|EGH29211.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
          japonica str. M301072PT]
          Length = 63

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 33/63 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L+ +I+    + +  + R +  +   +  +   G+++ +  F TF V  + +R+G
Sbjct: 1  MNKSELIDAIAASADIPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARIG 60

Query: 65 RNL 67
          RN 
Sbjct: 61 RNP 63


>gi|313185145|gb|ADR50137.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           IT+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   ITKSDIVDQISLNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|257456676|ref|ZP_05621869.1| DNA-binding protein, HU family [Treponema vincentii ATCC 35580]
 gi|257445943|gb|EEV20993.1| DNA-binding protein, HU family [Treponema vincentii ATCC 35580]
          Length = 112

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG- 64
          T++ +V +I K+     KD        F E+  +  RGE I+I  F TF V+ +  R G 
Sbjct: 11 TKTSIVDAIYKKSDHMLKDIHSVSDLFFAEMFQALERGETIEIRGFGTFSVQFRKGRKGM 70

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + V      VVVF+   IL   +
Sbjct: 71 RNPKTGELVDTADHSVVVFRPGKILSAAV 99


>gi|218130464|ref|ZP_03459268.1| hypothetical protein BACEGG_02053 [Bacteroides eggerthii DSM
          20697]
 gi|317473947|ref|ZP_07933226.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
 gi|329954389|ref|ZP_08295481.1| DNA-binding protein HU [Bacteroides clarus YIT 12056]
 gi|217987343|gb|EEC53673.1| hypothetical protein BACEGG_02053 [Bacteroides eggerthii DSM
          20697]
 gi|316909789|gb|EFV31464.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
 gi|328527657|gb|EGF54650.1| DNA-binding protein HU [Bacteroides clarus YIT 12056]
          Length = 91

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 40/91 (43%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +      V    + +  S  + E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEITKNTGIDKVTVLTTVEAFMDAVKASLSKDENVYLRGFGSFVVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN+  N  + I    +  FK +      +  
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTFTIAVKK 91


>gi|153011966|ref|YP_001373178.1| histone family protein DNA-binding protein [Ochrobactrum anthropi
          ATCC 49188]
 gi|151563854|gb|ABS17349.1| histone family protein DNA-binding protein [Ochrobactrum anthropi
          ATCC 49188]
          Length = 92

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 43/89 (48%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+ E  LS+  +   V ++F +I ++A+ G    I SF  F +K+   R GR
Sbjct: 3  TTNEIADKIASEQNLSKVQAKAIVESVFRQITEAALAGAETSIPSFGKFKLKETPEREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N  T   +KI   + + F     +K  + 
Sbjct: 63 NPATGATIKIAAAKKLAFTPGKAVKDALN 91


>gi|330984063|gb|EGH82166.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str.
          M301315]
          Length = 90

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 40/86 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +L+ ++  + G+ RKD    +  L   I D         +    TF V ++ +R G
Sbjct: 1  MTKKELIDALIAKSGVDRKDVEAVINALPETIKDEIRATGQSAVYGLGTFKVSERAARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
          RN  T   ++I   +VV  K +  L+
Sbjct: 61 RNPSTGAAIEIPASKVVSVKLTKDLR 86


>gi|170723403|ref|YP_001751091.1| histone family protein DNA-binding protein [Pseudomonas putida
          W619]
 gi|169761406|gb|ACA74722.1| histone family protein DNA-binding protein [Pseudomonas putida
          W619]
          Length = 93

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 37/92 (40%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  L+  I++     +  +   +  L   + D    G  I +       V ++ +R 
Sbjct: 2  ALTKDQLIADIAESIAQPKATAKNALEQLGQIVADQLENGAEITLPGIGKLKVSERPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN  T   ++I  ++VV F  +  L   I  
Sbjct: 62 GRNPSTGAAIEIAAKKVVKFVPAKSLTDAINK 93


>gi|255019397|ref|ZP_05291506.1| Integration host factor beta subunit [Acidithiobacillus caldus
          ATCC 51756]
 gi|254971169|gb|EET28622.1| Integration host factor beta subunit [Acidithiobacillus caldus
          ATCC 51756]
          Length = 71

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 33/62 (53%)

Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          + + + D+    E I+I  F +F +  +  + GRN +T + V +  +RV  FK    L++
Sbjct: 1  MLDYLSDALRENERIEIRGFGSFSLHIRPEKQGRNPKTGEPVWVPEKRVPHFKPGKELRE 60

Query: 92 RI 93
          ++
Sbjct: 61 QV 62


>gi|223940629|ref|ZP_03632472.1| histone family protein DNA-binding protein [bacterium Ellin514]
 gi|223890710|gb|EEF57228.1| histone family protein DNA-binding protein [bacterium Ellin514]
          Length = 119

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+ DLV  IS E GL ++     V    + I ++  +G+ +++ +F  F VK + +R+
Sbjct: 2  TMTKRDLVIRISNETGLVQQQVLDVVQKTLDYIAEALSKGDKVELRNFGVFEVKVRKARI 61

Query: 64 GRNLQTNQE-VKIDPRRVVVFKASSILKKRI 93
          GRN       V I  R VV FK    ++  +
Sbjct: 62 GRNPNAPATDVPIPQRSVVKFKPGKEMRAEV 92


>gi|317503236|ref|ZP_07961294.1| DNA-binding protein HU [Prevotella salivae DSM 15606]
 gi|315665649|gb|EFV05258.1| DNA-binding protein HU [Prevotella salivae DSM 15606]
          Length = 92

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63
          +T++D++  I+   G+ ++D    V +    I +S   + E + +  F +F +K + ++ 
Sbjct: 1  MTKADIINEIAMTTGVQKRDVAVVVESFMETIKNSLLEKKENVYLRGFGSFVIKHRAAKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN+  N  + I+   +  FK S    +++  
Sbjct: 61 ARNILKNTTMMIEAHDLPSFKPSKSFVEQMKK 92


>gi|224824984|ref|ZP_03698090.1| histone family protein DNA-binding protein [Lutiella nitroferrum
          2002]
 gi|224602655|gb|EEG08832.1| histone family protein DNA-binding protein [Lutiella nitroferrum
          2002]
          Length = 62

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          +   +  +  +G+ + +  F TF+V ++  R GRN +T   + I   R   F+A   LK 
Sbjct: 1  MIAAVTGALKQGDTVTLVGFGTFYVGERAERTGRNPKTGDSITIPAARSPKFRAGKALKD 60

Query: 92 RI 93
           +
Sbjct: 61 AL 62


>gi|329889861|ref|ZP_08268204.1| DNA-binding protein HU 1 [Brevundimonas diminuta ATCC 11568]
 gi|328845162|gb|EGF94726.1| DNA-binding protein HU 1 [Brevundimonas diminuta ATCC 11568]
          Length = 91

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  SDL   I+ E G S+ D+ + V  +F  I D+A  G  I ++ F  F VK   +R G
Sbjct: 1  MNNSDLADKIAAEHGTSKADARKIVDAVFAAIADAAAGGSEIALNGFGKFKVKDSPAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T + +KI   + + F  +  +K ++  
Sbjct: 61 RNPATGETIKIAASKKLTFSPAKAVKDKLNG 91


>gi|189466527|ref|ZP_03015312.1| hypothetical protein BACINT_02902 [Bacteroides intestinalis DSM
          17393]
 gi|224540249|ref|ZP_03680788.1| hypothetical protein BACCELL_05162 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|189434791|gb|EDV03776.1| hypothetical protein BACINT_02902 [Bacteroides intestinalis DSM
          17393]
 gi|224518128|gb|EEF87233.1| hypothetical protein BACCELL_05162 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 91

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 39/85 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +      V    + +  S  + E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEITKNTGIDKVTVLTTVEAFMDTVKASLSKDENVYLRGFGSFVVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  + I    +  FK +   
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85


>gi|104783417|ref|YP_609915.1| DNA-binding protein HU form N [Pseudomonas entomophila L48]
 gi|95112404|emb|CAK17131.1| DNA-binding protein HU form N [Pseudomonas entomophila L48]
          Length = 93

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 38/92 (41%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  L+  I++     +  +   +  L   + D    G  I +       V ++ +R 
Sbjct: 2  ALTKDQLIADIAESIDAPKTTARAALEQLGQIVADQLENGAEITLPGIGKLKVSERPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN  T   ++I  ++VV F  + +L   I  
Sbjct: 62 GRNPSTGAAIEIAAKKVVKFVPAKVLTDSINK 93


>gi|313185103|gb|ADR50116.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   LTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|257459443|ref|ZP_05624552.1| DNA-binding protein HU 1 [Campylobacter gracilis RM3268]
 gi|257442868|gb|EEV18002.1| DNA-binding protein HU 1 [Campylobacter gracilis RM3268]
          Length = 98

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 45/85 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++D ++ ++ + GLS+KD+   V +    I +  V+G+ I    F +F + ++ +R G
Sbjct: 1  MKKADFIQVVADKAGLSKKDTVNVVDSALEAIKELLVKGDDISFIGFGSFGIAERAAREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          +   TN+  K    +VV FK    L
Sbjct: 61 KVPGTNRTYKSPATKVVKFKVGKQL 85


>gi|330502968|ref|YP_004379837.1| histone family protein DNA-binding protein [Pseudomonas mendocina
          NK-01]
 gi|328917254|gb|AEB58085.1| histone family protein DNA-binding protein [Pseudomonas mendocina
          NK-01]
          Length = 92

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 38/91 (41%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           IT+  L+  +++   L +      +  L   + D+      I +       V ++ +R 
Sbjct: 2  AITKDQLISDLAEAVSLPKATVRTLIDQLGEIVGDALENDGEITLPGIGKLKVSERPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN QT + ++I  ++VV    +  L   + 
Sbjct: 62 GRNPQTGKSIEIAAKKVVKLVPAKALTDALN 92


>gi|251772980|gb|EES53537.1| histone family protein DNA-binding protein [Leptospirillum
          ferrodiazotrophum]
          Length = 96

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+ +LV+ ++++F G+ R+D+   +      + +    G+ +++  F    V+ +  R 
Sbjct: 1  MTKGELVQKLARQFPGIRREDARIMIDLFLESMKEGLREGDTVELRDFGVLRVRTRSERK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN +T   V +  ++V  FK S ILK  + 
Sbjct: 61 ARNPRTGTSVVVGSKKVPYFKQSRILKAMLK 91


>gi|255038180|ref|YP_003088801.1| histone family protein DNA-binding protein [Dyadobacter fermentans
           DSM 18053]
 gi|254950936|gb|ACT95636.1| histone family protein DNA-binding protein [Dyadobacter fermentans
           DSM 18053]
          Length = 101

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 52/100 (52%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D++  IS++ G+ + D  + + + F  + DS   GE + +  F +F  K++  +V 
Sbjct: 1   MTKADVIAQISEKTGVDKGDVQQTLESFFTVVKDSLSDGENLYVRGFGSFINKKRARKVA 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           RN+     + ID   V  FK + +  +++ +  + +   +
Sbjct: 61  RNISKGTSMIIDEHFVPSFKPAKVFVEQVKESDKLKAVAE 100


>gi|313185099|gb|ADR50114.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           IT+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   ITKSDIVDQISLNITNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|238063255|ref|ZP_04607964.1| histone family protein DNA-binding protein [Micromonospora sp. ATCC
           39149]
 gi|237885066|gb|EEP73894.1| histone family protein DNA-binding protein [Micromonospora sp. ATCC
           39149]
          Length = 241

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           + + +++L+++++   G  R+ +T  +  +  E+  +  +GE + I+ F  F  + +G+R
Sbjct: 16  EVVNKAELIEALAVRLG-DRRTATAALDAVLAEVQAAVTKGEKVAITGFGAFEKRVRGAR 74

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
             RN +T + VK+    V  F+A +  K+ +   
Sbjct: 75  TARNPRTGEAVKVKKTSVPTFRAGAGFKEMVASG 108


>gi|315637348|ref|ZP_07892566.1| DNA-binding protein HU [Arcobacter butzleri JV22]
 gi|315478391|gb|EFU69106.1| DNA-binding protein HU [Arcobacter butzleri JV22]
          Length = 91

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ + +++ + GLS+KD+   V  + + I ++ V+ E++    F TF    + +R  
Sbjct: 1  MNKAEFIDAVAAKAGLSKKDAKGAVDAVLDTITEALVKKESVSFIGFGTFATAARAARTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +   T + V +    V  FK    LK+ +  
Sbjct: 61 KVPGTTKTVDVPATTVAKFKVGKALKEAVAK 91


>gi|315121911|ref|YP_004062400.1| integration host factor, beta subunit [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495313|gb|ADR51912.1| integration host factor, beta subunit [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 105

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S L+ +I+K+   ++ +D  + V  L  E+  +   G  ++I  F TF V+++ +R+
Sbjct: 1  MIKSSLIYTIAKKNPQINHQDVEKMVNLLLEEMTKALANGGRVEIRGFGTFSVRKRSARL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           R     + + +  + V  F++   LK+ + 
Sbjct: 61 ARAPLAQKVISVKEKMVPFFRSGKNLKECLN 91


>gi|153806286|ref|ZP_01958954.1| hypothetical protein BACCAC_00542 [Bacteroides caccae ATCC 43185]
 gi|149130963|gb|EDM22169.1| hypothetical protein BACCAC_00542 [Bacteroides caccae ATCC 43185]
          Length = 92

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 45/89 (50%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+   +    +++  G + KD+   + +L +++      G  I +  F +F VK+K  R+
Sbjct: 2  TMNNKEFTSELAERLGYTIKDTAELIGSLLSDMVQELEEGNVIAVQGFGSFEVKKKAERI 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
            N  + Q + + P+ V+ +K S+ LK +
Sbjct: 62 SINPASKQRMLVPPKLVLSYKPSNTLKDK 90


>gi|1280545|gb|AAC73085.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|1280593|gb|AAC73106.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   VTKSDIVDQISLNIRNNNLKLEKKCIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|260889058|ref|ZP_05900321.1| DNA-binding protein HU [Leptotrichia hofstadii F0254]
 gi|260861118|gb|EEX75618.1| DNA-binding protein HU [Leptotrichia hofstadii F0254]
          Length = 99

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 50/95 (52%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
             +++ + V + +K  G ++K +   V        +  V+GE+I+   + TF VK++ +
Sbjct: 4  GDAMSKKEFVDAYAKATGETKKRAEELVNAFLGTAEEFLVKGESIQFVGWGTFEVKERAA 63

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          R GRN  T + +KID ++VV FK    L  ++ D 
Sbjct: 64 REGRNPSTGKPIKIDAKKVVKFKVGKKLADKVADA 98


>gi|308372312|ref|ZP_07428191.2| LOW QUALITY PROTEIN: hypothetical protein TMDG_00186
          [Mycobacterium tuberculosis SUMu004]
 gi|308333643|gb|EFP22494.1| LOW QUALITY PROTEIN: hypothetical protein TMDG_00186
          [Mycobacterium tuberculosis SUMu004]
          Length = 109

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|282858819|ref|ZP_06267964.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010]
 gi|282588388|gb|EFB93548.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010]
          Length = 95

 Score = 94.6 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 51/93 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + +  ++ + G ++++S + VT++  EI  S   G+ ++I+ F TF +K++  RV 
Sbjct: 1  MNNKEFITKLASQTGFTQEESQKMVTSVLKEIGKSFELGDPVQITGFGTFDIKKRMERVM 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           N  T   + + P+ V+ FK +S +K  I   +
Sbjct: 61 VNPATGLRMLVPPKLVLNFKPTSTIKTHIKKGV 93


>gi|296114688|ref|ZP_06833340.1| putative DNA binding protein [Gluconacetobacter hansenii ATCC
          23769]
 gi|295978784|gb|EFG85510.1| putative DNA binding protein [Gluconacetobacter hansenii ATCC
          23769]
          Length = 91

 Score = 94.6 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 43/88 (48%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          +DLV  I+     S+ ++ + +  L   +  +A  G+ I + +F  F VK+  +R GRN 
Sbjct: 4  ADLVDHIATTTDTSKTETRKVLDALIETMTVAAKAGDEITLPNFGKFKVKEVAAREGRNP 63

Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95
           T   ++I   R + F  +  LK  + D
Sbjct: 64 ATGATIQIAASRKLAFTPAKALKDSLND 91


>gi|253570783|ref|ZP_04848191.1| DNA-binding protein HU [Bacteroides sp. 1_1_6]
 gi|251839732|gb|EES67815.1| DNA-binding protein HU [Bacteroides sp. 1_1_6]
          Length = 95

 Score = 94.6 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 46/85 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D++  +S+E G+ R+     + +    + D+  R  ++ +  F TF +K++ ++  
Sbjct: 1  MTKADIINRVSEELGIDRRTVGLVIESFMKCVKDALGRERSVFLRGFGTFSLKKRAAKKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          +N+Q +  + I  R++  FK S   
Sbjct: 61 QNIQQHTTICIPARKIPHFKPSESF 85


>gi|3913401|sp|Q44625|DBH_BORAD RecName: Full=DNA-binding protein HBbu
 gi|1280589|gb|AAC73108.1| histone-like protein HBbu [Borrelia andersonii]
 gi|89145722|gb|ABD62050.1| Hbb [Borrelia andersonii]
 gi|89145726|gb|ABD62052.1| Hbb [Borrelia andersonii]
          Length = 108

 Score = 94.6 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   VTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  RGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|313185021|gb|ADR50075.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           IT+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|262341299|ref|YP_003284154.1| DNA-binding protein HU [Blattabacterium sp. (Blattella germanica)
          str. Bge]
 gi|262272636|gb|ACY40544.1| DNA-binding protein HU [Blattabacterium sp. (Blattella germanica)
          str. Bge]
          Length = 94

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D++  I  E G  R D+ + + T   +I  S   GE + +  F +F +K +  ++G
Sbjct: 1  MTKADIITEIISETGSERIDTQKVIETFMKKIKQSLTSGENVYLRGFGSFIIKYRAKKLG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          R++  ++ + I    +  FK +    + +  
Sbjct: 61 RHISKDESIVIPAHNIPAFKPAKSFTELVKK 91


>gi|222080181|ref|YP_002540044.1| HNS-type DNA binding protein [Agrobacterium vitis S4]
 gi|221738826|gb|ACM39605.1| HNS-type DNA binding protein [Agrobacterium vitis S4]
          Length = 92

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 40/90 (44%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+ + GL++  +   V  +F  I D+A       I  F  F VK    R GR
Sbjct: 3  TTNEIADKIAADNGLTKVQAKGIVEAVFQAIADAAGSDAETSIPGFGKFKVKASPEREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N  T +++ +   + + F  +  LK  +  
Sbjct: 63 NPATGEKMTVAASKKLTFAPAKALKDALNK 92


>gi|257125666|ref|YP_003163780.1| histone family protein DNA-binding protein [Leptotrichia buccalis
          C-1013-b]
 gi|257049605|gb|ACV38789.1| histone family protein DNA-binding protein [Leptotrichia buccalis
          C-1013-b]
          Length = 93

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 38/73 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++ + V + +K  G ++K +   V        +  V+GE I+   + TF VK++ +R G
Sbjct: 1  MSKKEFVDAYAKATGETKKRAEELVNAFLETAEEFLVKGENIQFVGWGTFEVKERAAREG 60

Query: 65 RNLQTNQEVKIDP 77
          RN  T   ++I+ 
Sbjct: 61 RNPSTGDPIQIEA 73


>gi|58979383|gb|AAW83356.1| DNA-binding protein HU [Campylobacter coli]
          Length = 96

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 43/85 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+      + + I D   +G+++    F TF   ++ +R  
Sbjct: 1  MTKADFISQVAQTAGLTKKDAAAATDAVISTITDVLAKGDSVSFIGFGTFSTAERAAREA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          R   T + +K+   RV  FK    L
Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNL 85


>gi|89145724|gb|ABD62051.1| Hbb [Borrelia andersonii]
          Length = 108

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  IS         L +K     +   F E+ ++      I+  SF TF V+++
Sbjct: 9   VTKSDIVDQISLNIRNNNLKLEKKCIRLVIDAFFEELKNNLCSNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  RGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|260911737|ref|ZP_05918313.1| conserved hypothetical protein [Prevotella sp. oral taxon 472
          str. F0295]
 gi|260634162|gb|EEX52276.1| conserved hypothetical protein [Prevotella sp. oral taxon 472
          str. F0295]
          Length = 96

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 48/92 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + +  ++++ G ++  +   V  + +E+      G+ I I  F TF VK++  RV 
Sbjct: 1  MNNKEFITELAQQTGYTQSVTQSLVRNIIDEMAVRFDEGDTISIPGFGTFEVKKRLERVV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N  T Q + + P+ V+ F+ ++ +K+R+ + 
Sbjct: 61 VNPSTQQRMLVPPKLVLNFRPTASIKERLKNG 92


>gi|5419919|emb|CAB46493.1| histone-like protein [Mycobacterium bovis]
          Length = 205

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|255080644|ref|XP_002503895.1| predicted protein [Micromonas sp. RCC299]
 gi|226519162|gb|ACO65153.1| predicted protein [Micromonas sp. RCC299]
          Length = 118

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)

Query: 11  VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT- 69
           V  ++ E G+S+K +   + +L   I  + V GE +    F +F    + +R G N Q  
Sbjct: 33  VDLMASEAGISKKQAEIALKSLLAGIEGAVVAGERVTFQGFGSFESVARAARTGVNPQNP 92

Query: 70  NQEVKIDPRRVVVFKASSILKKRIMD 95
            Q++KI       FKA S  K  +  
Sbjct: 93  TQKIKIPASMAPKFKAGSAFKSAVNK 118


>gi|89067289|ref|ZP_01154802.1| DNA-binding protein HU [Oceanicola granulosus HTCC2516]
 gi|89046858|gb|EAR52912.1| DNA-binding protein HU [Oceanicola granulosus HTCC2516]
          Length = 95

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 48/95 (50%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +T++ LV ++++E G  +K ++  +  + N I      G A+ +      + +++ 
Sbjct: 1  MAKPMTKTQLVAALAEEMGSDKKTASAALDAVTNVITKEVSGGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R+ RN  T +++K D  +VV    +  LK  +  
Sbjct: 61 ERMVRNPATGEQIKKDADKVVKMTIAKALKDSVNG 95


>gi|160871772|ref|ZP_02061904.1| integration host factor subunit alpha (IHF-alpha) [Rickettsiella
          grylli]
 gi|159120571|gb|EDP45909.1| integration host factor subunit alpha (IHF-alpha) [Rickettsiella
          grylli]
          Length = 102

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T++DL+ S+  +E  LSR  + + V   F +I  +  +GE++KIS    F  + K  R 
Sbjct: 4  LTKADLIHSLRQQESSLSRLVANKLVDAFFEQIMFALEQGESVKISGLGRFRRRLKKERP 63

Query: 64 GRNLQTNQEVKIDPRRVVVFKAS 86
          GRN QT    ++  R VV+F+AS
Sbjct: 64 GRNPQTGVTTQVSSRNVVLFQAS 86


>gi|288799936|ref|ZP_06405395.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333184|gb|EFC71663.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039]
          Length = 93

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63
          +T++D++  I+   GL +KD +  V +L   I DS + + E + +  F +F +K + ++ 
Sbjct: 1  MTKADIINEIALSTGLQKKDVSVVVESLMGTIKDSLLNKKENVYLRGFGSFTIKHRAAKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           RN+  N  + ID      FK +    +++   
Sbjct: 61 ARNILKNTTMTIDAHDFPSFKPAKSFAEKMKQG 93


>gi|282881455|ref|ZP_06290129.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1]
 gi|281304681|gb|EFA96767.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1]
          Length = 95

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 48/94 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + +  +++  G +++ +   V  L   +  +   GEA+ I SF TF +K++  R+ 
Sbjct: 1  MNNKEFIAELAQRCGYTQEKTQNLVNILVEAMASNFDEGEAVSIPSFGTFEIKKRLERIL 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           N  T + + + P+ V+ F+ + ++K+++     
Sbjct: 61 VNPSTGKRMMVPPKLVLNFRPTPLVKEQLKKGGN 94


>gi|226329063|ref|ZP_03804581.1| hypothetical protein PROPEN_02966 [Proteus penneri ATCC 35198]
 gi|225202249|gb|EEG84603.1| hypothetical protein PROPEN_02966 [Proteus penneri ATCC 35198]
          Length = 66

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%)

Query: 41 VRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           +G+ + +  F TF V+ + +R GRN QT +E++I+  +V  F+A   LK  +  
Sbjct: 12 KKGDDVALVGFGTFTVRDRAARTGRNPQTGKEIQIEAAKVPAFRAGKGLKDAVNQ 66


>gi|302344202|ref|YP_003808731.1| histone family protein DNA-binding protein [Desulfarculus baarsii
          DSM 2075]
 gi|301640815|gb|ADK86137.1| histone family protein DNA-binding protein [Desulfarculus baarsii
          DSM 2075]
          Length = 95

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 47/93 (50%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           K +T+++++  I+ +  +S++ +   +        D  + G  I+++   TF +K+   
Sbjct: 3  GKPMTKAEMIDKIASKADISKRAAKDALEAFVEICRDEVMAGGTIRVAGLGTFSLKESAP 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          R G N  T + ++I  ++ + FK S+ ++  + 
Sbjct: 63 RQGVNPATRKPIEITAKKRMAFKMSAQVRDMLN 95


>gi|171318736|ref|ZP_02907877.1| histone family protein DNA-binding protein [Burkholderia
          ambifaria MEX-5]
 gi|171096052|gb|EDT40980.1| histone family protein DNA-binding protein [Burkholderia
          ambifaria MEX-5]
          Length = 91

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ +++    +S+ ++ + V    + I  +  RGE++++  F  F  +Q+ +R  
Sbjct: 1  MNKQELIDAVAASADVSKAEAAKSVHAALDVIVGAVSRGESVQLIGFGAFSQRQRAARTR 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN  T  E+ I     V F A    K  + 
Sbjct: 61 RNPATGAEIAIPDANTV-FTAGKAFKDAVN 89


>gi|3228564|gb|AAD03319.1| histone-like protein HLm [Listeria monocytogenes]
          Length = 83

 Score = 93.8 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           ++DLV S+++   LS+K   +    L++++           +  F  F V+++ +R GR
Sbjct: 3  NKTDLVNSVAELADLSKKTQRK--QQLYSKLFKLLH------LLGFGNFEVRERAARKGR 54

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N  T +E+ I   +V  FK    LK+ + 
Sbjct: 55 NPATKEEIDIPASKVPAFKPGKALKEAVK 83


>gi|281421498|ref|ZP_06252497.1| DNA-binding protein HU-beta [Prevotella copri DSM 18205]
 gi|281404570|gb|EFB35250.1| DNA-binding protein HU-beta [Prevotella copri DSM 18205]
          Length = 91

 Score = 93.8 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 39/71 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+    +++  +   +    N + ++ + G+ I++  F TF + ++ +R G
Sbjct: 1  MNKTELIDKIAAGAEITKAQAKAALEATTNALKEALIAGDKIQLVGFGTFSINERPAREG 60

Query: 65 RNLQTNQEVKI 75
           N  T ++++I
Sbjct: 61 INPATKEKIQI 71


>gi|26987711|ref|NP_743136.1| histone family protein DNA-binding protein [Pseudomonas putida
          KT2440]
 gi|148546256|ref|YP_001266358.1| histone family protein DNA-binding protein [Pseudomonas putida
          F1]
 gi|167031996|ref|YP_001667227.1| histone family protein DNA-binding protein [Pseudomonas putida
          GB-1]
 gi|325278215|ref|ZP_08143708.1| histone family protein DNA-binding protein [Pseudomonas sp.
          TJI-51]
 gi|14028719|gb|AAK52476.1|AF345629_1 histone-like protein HU form N [Pseudomonas putida]
 gi|24982398|gb|AAN66600.1|AE016287_11 DNA-binding protein HU, form N [Pseudomonas putida KT2440]
 gi|148510314|gb|ABQ77174.1| histone family protein DNA-binding protein [Pseudomonas putida
          F1]
 gi|166858484|gb|ABY96891.1| histone family protein DNA-binding protein [Pseudomonas putida
          GB-1]
 gi|313497342|gb|ADR58708.1| HupN [Pseudomonas putida BIRD-1]
 gi|324096655|gb|EGB95008.1| histone family protein DNA-binding protein [Pseudomonas sp.
          TJI-51]
          Length = 93

 Score = 93.8 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 38/92 (41%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  L+  I++     +  +   +  L   + D    G  I +       V ++ +R 
Sbjct: 2  ALTKDQLIADIAESIAAPKATAKNALEQLGQIVADQLENGAEITLPGIGKLKVSERPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN  T   ++I  ++VV F  + +L   I  
Sbjct: 62 GRNPSTGAAIEIAAKKVVKFVPAKVLTDAINK 93


>gi|307565346|ref|ZP_07627839.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
 gi|307346015|gb|EFN91359.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
          Length = 96

 Score = 93.8 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 50/92 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + +  +S + G ++++S + V TL +E+  S   G+ I+IS F +F +K++  R+ 
Sbjct: 1  MNNKEFIAKLSNQMGFTQEESQKCVKTLLDEMGKSFELGKPIQISGFGSFDIKKRMERII 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N  T   + + P+ V+ FK ++ +K  I   
Sbjct: 61 VNPATGVRMLVPPKLVLSFKPTNTIKAHIKKG 92


>gi|319902742|ref|YP_004162470.1| histone family protein DNA-binding protein [Bacteroides
          helcogenes P 36-108]
 gi|319417773|gb|ADV44884.1| histone family protein DNA-binding protein [Bacteroides
          helcogenes P 36-108]
          Length = 91

 Score = 93.8 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 38/85 (44%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K  G+ +      V      +  S  + E + +  F +F VK++  +  
Sbjct: 1  MTKADIVNEITKNTGIDKVTVLTTVEAFMEAVKASLSKDENVYLRGFGSFVVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  + I    +  FK +   
Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85


>gi|323345437|ref|ZP_08085660.1| DNA-binding protein HU [Prevotella oralis ATCC 33269]
 gi|323093551|gb|EFZ36129.1| DNA-binding protein HU [Prevotella oralis ATCC 33269]
          Length = 129

 Score = 93.8 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSR 62
            +T++D++  I+   G+ +K+    + +  + + +S   R E + +  F +F +K + ++
Sbjct: 37  AMTKADIINEIANSTGMQKKEVAVVIESFMSTVKESLLKRKENVYLRGFGSFIIKHRAAK 96

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSIL 89
             RN+  N  + I+   +  FK +   
Sbjct: 97  TARNILKNTTMTIEAHDLPSFKPAKSF 123


>gi|145224804|ref|YP_001135482.1| histone family protein DNA-binding protein [Mycobacterium gilvum
          PYR-GCK]
 gi|315445134|ref|YP_004078013.1| bacterial nucleoid protein Hbs [Mycobacterium sp. Spyr1]
 gi|145217290|gb|ABP46694.1| bacterial nucleoid protein Hbs [Mycobacterium gilvum PYR-GCK]
 gi|315263437|gb|ADU00179.1| bacterial nucleoid protein Hbs [Mycobacterium sp. Spyr1]
          Length = 217

 Score = 93.8 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +GE++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTEKLGSDRRQATAAVENVVDTIVRAVHKGESVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    +
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQK 94


>gi|157737565|ref|YP_001490248.1| DNA-binding protein HU [Arcobacter butzleri RM4018]
 gi|157699419|gb|ABV67579.1| DNA-binding protein HU [Arcobacter butzleri RM4018]
          Length = 91

 Score = 93.8 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ + +++ + GLS+KD+   V  + + I ++ V+ E++    F TF    + +R  
Sbjct: 1  MNKAEFIDAVATKAGLSKKDAKGAVDAVLDTITEALVKKESVSFIGFGTFATAARAARTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +   T + V +    V  FK    LK+ +  
Sbjct: 61 KVPGTTKTVDVPATTVAKFKVGKALKEAVAK 91


>gi|219684742|ref|ZP_03539685.1| DNA-binding protein HU [Borrelia garinii PBr]
 gi|219672104|gb|EED29158.1| DNA-binding protein HU [Borrelia garinii PBr]
 gi|313185033|gb|ADR50081.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 93.8 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   VTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|203284151|ref|YP_002221891.1| HbbU protein [Borrelia duttonii Ly]
 gi|203287689|ref|YP_002222704.1| HbbU protein [Borrelia recurrentis A1]
 gi|201083594|gb|ACH93185.1| HbbU protein [Borrelia duttonii Ly]
 gi|201084909|gb|ACH94483.1| HbbU protein [Borrelia recurrentis A1]
          Length = 108

 Score = 93.8 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 5   ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  I          L +K     V   F E+ +S      I+  SF TF ++++
Sbjct: 9   VTKSDIVDQIFLNIKNNNEKLEKKYIRLVVDAFFEELKNSLCVNNVIEFRSFGTFELRKR 68

Query: 60  GSRV-GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
             R   RN QT + V +D   V  F+    LK+R+ 
Sbjct: 69  KGRQNARNPQTGEYVNVDDHHVAYFRPGKDLKERVW 104


>gi|1280595|gb|AAC73107.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 93.8 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF ++++
Sbjct: 9   VTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFELRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|119953028|ref|YP_945237.1| DNA-binding protein HbbU [Borrelia turicatae 91E135]
 gi|119861799|gb|AAX17567.1| DNA-binding protein HbbU [Borrelia turicatae 91E135]
          Length = 108

 Score = 93.8 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  IS         L +K     V   F E+ +S      I+  SF TF ++++
Sbjct: 9   VTKSDIVNQISLNIKNSNEKLEKKYIRLVVDAFFEELKNSLCLNNVIEFRSFGTFELRKR 68

Query: 60  GSRV-GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + V +D   V  F+    LK+R+  
Sbjct: 69  KGRQNARNPQTGEYVNVDDHHVAYFRPGKDLKERVWG 105


>gi|237716500|ref|ZP_04546981.1| DNA-binding protein HU [Bacteroides sp. D1]
 gi|237720681|ref|ZP_04551162.1| DNA-binding protein HU [Bacteroides sp. 2_2_4]
 gi|294645092|ref|ZP_06722818.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a]
 gi|229444147|gb|EEO49938.1| DNA-binding protein HU [Bacteroides sp. D1]
 gi|229449516|gb|EEO55307.1| DNA-binding protein HU [Bacteroides sp. 2_2_4]
 gi|292639598|gb|EFF57890.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a]
          Length = 90

 Score = 93.8 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 44/88 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   +    +++  G + KD++  + +L + +      G  I +  F +F VK+K  R+ 
Sbjct: 1  MNNKEFTSELAERLGYTIKDTSELIGSLLSSMTQELEEGNVIAVQGFGSFEVKKKAERIS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
           N  + Q + + P+ V+ ++ S+ LK +
Sbjct: 61 INPASKQRMLVPPKLVLSYRPSNTLKDK 88


>gi|118465605|ref|YP_883003.1| DNA-binding protein HU [Mycobacterium avium 104]
 gi|118166892|gb|ABK67789.1| DNA-binding protein HU [Mycobacterium avium 104]
          Length = 217

 Score = 93.8 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 50/94 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++    R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 6  MNKAELIDVLTQKLNTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 65

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 66 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 99


>gi|110640053|ref|YP_680263.1| DNA-binding protein HU [Cytophaga hutchinsonii ATCC 33406]
 gi|110282734|gb|ABG60920.1| DNA-binding protein HU [Cytophaga hutchinsonii ATCC 33406]
          Length = 110

 Score = 93.8 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 45/87 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D++  I+++ G+ + D T  V   F  + DS   G  I +  F +F  K++  +V 
Sbjct: 1  MTKADVINEIAEKTGIDKADVTTTVEAFFKVVKDSMSEGHNIYVRGFGSFINKKRARKVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN+  N  + ID   +  FK + +  +
Sbjct: 61 RNISKNTAIIIDEHYIPSFKPAKVFVE 87


>gi|313184981|gb|ADR50055.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 93.8 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           IT+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   ITKSDIVDQISLNITNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|313665448|ref|YP_004047319.1| DNA-binding protein HU [Mycoplasma leachii PG50]
 gi|312949333|gb|ADR23929.1| DNA-binding protein HU [Mycoplasma leachii PG50]
          Length = 90

 Score = 93.8 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 46/89 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +L++ I     +S+ D+ + V  +F  I    + G+ + ++ F  F + ++ SR G
Sbjct: 1  MTKKELIEEIIINENISKVDAEKVVNRIFQTISKHLIEGKEVSVAGFGKFVISERSSREG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N  T +++ I   R   FK +  LK+ +
Sbjct: 61 VNPSTGEKIIIPDSRSARFKPAKQLKESL 89


>gi|1280591|gb|AAC73105.1| histone-like protein HBbu [Borrelia burgdorferi DN127]
          Length = 108

 Score = 93.8 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   VTKSDIVDQISLNIRNNNLKLEKKCIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  RGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|169630373|ref|YP_001704022.1| DNA-binding protein HU [Mycobacterium abscessus ATCC 19977]
 gi|169242340|emb|CAM63368.1| DNA-binding protein HU homolog (Histone-like) [Mycobacterium
          abscessus]
          Length = 207

 Score = 93.8 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +GE++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVEHVVDTIVRTVHKGESVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    +
Sbjct: 61 RNPRTGETVKVKPTSVPTFRPGAQFKAVVSGAQK 94


>gi|330992041|ref|ZP_08315990.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1]
 gi|329761062|gb|EGG77557.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1]
          Length = 91

 Score = 93.8 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 43/88 (48%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          +DLV  I+     S+ D+ + +  L   +  +A  G+ I + +F  F VK+  +R GRN 
Sbjct: 4  ADLVDHIATTTDTSKTDTRKVLDALVEAMTAAAKAGDEITLPNFGKFKVKEVAAREGRNP 63

Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95
           T   ++I   R + F  +  LK  + D
Sbjct: 64 ATGAAIQIAASRKLAFTPAKALKDSLND 91


>gi|288927531|ref|ZP_06421378.1| integration host factor subunit alpha (IHF-alpha) [Prevotella sp.
          oral taxon 317 str. F0108]
 gi|288330365|gb|EFC68949.1| integration host factor subunit alpha (IHF-alpha) [Prevotella sp.
          oral taxon 317 str. F0108]
          Length = 96

 Score = 93.8 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 48/92 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + +  ++++ G ++  +   V  + +E+      G+ + I  F TF VK++  RV 
Sbjct: 1  MNNKEFITELAQQTGYTQNVTQTLVRNVIDEMAVRFDEGDVVSIPGFGTFEVKKRLERVV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N  T Q + + P+ V+ F+ ++ +K+R+ + 
Sbjct: 61 VNPATQQRMLVPPKLVLNFRPTASIKERLKNG 92


>gi|261879549|ref|ZP_06005976.1| DNA-binding protein HU [Prevotella bergensis DSM 17361]
 gi|270333775|gb|EFA44561.1| DNA-binding protein HU [Prevotella bergensis DSM 17361]
          Length = 92

 Score = 93.8 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 50/91 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + +  ++   G ++ D+ + VT L  E+ D    G+ ++I++F TF VK++  R+ 
Sbjct: 1  MNNKEFIAELALRAGYTQADTQKMVTYLVEEMGDRFENGDCVQIANFGTFEVKKRLERII 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N  T Q + + P+ V+ FK  + +K+ + +
Sbjct: 61 VNPGTQQRMLVPPKLVLNFKPVAAIKEELKN 91


>gi|300021566|ref|YP_003754177.1| histone family protein DNA-binding protein [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523387|gb|ADJ21856.1| histone family protein DNA-binding protein [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 107

 Score = 93.8 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 46/91 (50%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+T   +  ++++   + +K S   +  L   I     +G  I+I       V+++ +R
Sbjct: 17  ETVTLKHIAAALAEAHEIPKKQSIALLEDLVTTIGKHLKKGARIRIGGLGVLQVRKRPAR 76

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           +GRN  T + +KI   + + F+A+  LK+ +
Sbjct: 77  MGRNPATGEAIKIKASKKIAFRAAKELKELV 107


>gi|51598493|ref|YP_072681.1| hbbU protein [Borrelia garinii PBi]
 gi|219685851|ref|ZP_03540659.1| DNA-binding protein HU [Borrelia garinii Far04]
 gi|3913405|sp|Q57153|DBH_BORGA RecName: Full=DNA-binding protein HBbu
 gi|1280557|gb|AAC73080.1| histone-like protein HBbu [Borrelia garinii]
 gi|1280559|gb|AAC73081.1| histone-like protein HBbu [Borrelia garinii PBi]
 gi|1280563|gb|AAC73083.1| histone-like protein HBbu [Borrelia garinii]
 gi|1280565|gb|AAC73084.1| histone-like protein HBbu [Borrelia garinii]
 gi|1280567|gb|AAC73086.1| histone-like protein HBbu [Borrelia garinii]
 gi|51573064|gb|AAU07089.1| hbbU protein [Borrelia garinii PBi]
 gi|73762242|gb|AAZ83609.1| Hbb [Borrelia garinii]
 gi|219672625|gb|EED29656.1| DNA-binding protein HU [Borrelia garinii Far04]
 gi|313184979|gb|ADR50054.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184983|gb|ADR50056.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184985|gb|ADR50057.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184987|gb|ADR50058.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184989|gb|ADR50059.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184991|gb|ADR50060.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184993|gb|ADR50061.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184995|gb|ADR50062.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184997|gb|ADR50063.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313184999|gb|ADR50064.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185001|gb|ADR50065.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185003|gb|ADR50066.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185005|gb|ADR50067.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185007|gb|ADR50068.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185009|gb|ADR50069.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185011|gb|ADR50070.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185013|gb|ADR50071.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185015|gb|ADR50072.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185017|gb|ADR50073.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185019|gb|ADR50074.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185023|gb|ADR50076.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185025|gb|ADR50077.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185027|gb|ADR50078.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185031|gb|ADR50080.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185035|gb|ADR50082.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185037|gb|ADR50083.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185039|gb|ADR50084.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185041|gb|ADR50085.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185043|gb|ADR50086.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185045|gb|ADR50087.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185047|gb|ADR50088.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185049|gb|ADR50089.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185051|gb|ADR50090.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185053|gb|ADR50091.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185055|gb|ADR50092.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185057|gb|ADR50093.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185059|gb|ADR50094.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185061|gb|ADR50095.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185063|gb|ADR50096.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185065|gb|ADR50097.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185067|gb|ADR50098.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185069|gb|ADR50099.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185071|gb|ADR50100.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185073|gb|ADR50101.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185075|gb|ADR50102.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185077|gb|ADR50103.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185079|gb|ADR50104.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185081|gb|ADR50105.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185083|gb|ADR50106.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185085|gb|ADR50107.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185087|gb|ADR50108.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185089|gb|ADR50109.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185091|gb|ADR50110.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185093|gb|ADR50111.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185095|gb|ADR50112.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185097|gb|ADR50113.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185105|gb|ADR50117.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185107|gb|ADR50118.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185109|gb|ADR50119.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185111|gb|ADR50120.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185113|gb|ADR50121.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185115|gb|ADR50122.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185117|gb|ADR50123.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185119|gb|ADR50124.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|313185121|gb|ADR50125.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 93.8 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           IT+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|28493083|ref|NP_787244.1| DNA-binding protein HU [Tropheryma whipplei str. Twist]
 gi|28572291|ref|NP_789071.1| DNA-binding protein HU-alpha [Tropheryma whipplei TW08/27]
 gi|28410422|emb|CAD66808.1| DNA-binding protein HU-alpha [Tropheryma whipplei TW08/27]
 gi|28476123|gb|AAO44213.1| DNA-binding protein HU [Tropheryma whipplei str. Twist]
          Length = 93

 Score = 93.8 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R++LV  +++  G+SR      +   F    ++   G  + I  + +     + +R 
Sbjct: 3  SLNRTELVAKVAETSGVSRATVNSVIEETFAVFAETVRAGGKVTIPGWCSVTRSHRAART 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN QT + V+I     V     S LK  + 
Sbjct: 63 GRNPQTGKTVEIPAGYSVRIAPGSKLKAAVK 93


>gi|237737909|ref|ZP_04568390.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817]
 gi|229419789|gb|EEO34836.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817]
          Length = 106

 Score = 93.4 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+ + V+    +  L ++ ++ +        + +  V+G+++    F  F   ++  R 
Sbjct: 1  MTKKEFVELFGAKAELKTKVEAEKLTKAFLETLEEVLVKGDSVAFIGFGKFEAAKRAERT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            N QT + +KI  R+V  FK    L +++ 
Sbjct: 61 CINPQTKKPMKIAARKVAKFKPGKNLLEKMN 91


>gi|120403129|ref|YP_952958.1| histone family protein DNA-binding protein [Mycobacterium
          vanbaalenii PYR-1]
 gi|119955947|gb|ABM12952.1| bacterial nucleoid protein Hbs [Mycobacterium vanbaalenii PYR-1]
          Length = 212

 Score = 93.4 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +GE++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTEKLGSDRRQATAAVENVVDTIVRAVHKGESVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    +
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQK 94


>gi|258648378|ref|ZP_05735847.1| DNA-binding protein HU [Prevotella tannerae ATCC 51259]
 gi|260851548|gb|EEX71417.1| DNA-binding protein HU [Prevotella tannerae ATCC 51259]
          Length = 94

 Score = 93.4 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 43/91 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+V  I+K+ G+ R      V    N + DS  R + + +  F +F +K++  +  
Sbjct: 1  MTKADIVNEIAKKTGIDRVTVLTTVEAFMNSVKDSLDREQNVYLRGFGSFILKKRAEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN+  N  + I    +  FK +    + I  
Sbjct: 61 RNISKNTTLIIPEHNIPAFKPAKSFLQSISK 91


>gi|85706119|ref|ZP_01037214.1| DNA-binding protein HU [Roseovarius sp. 217]
 gi|85669283|gb|EAQ24149.1| DNA-binding protein HU [Roseovarius sp. 217]
          Length = 95

 Score = 93.4 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 46/95 (48%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +T++ LV +++ E G  +K +   + ++   I      G A+ +      + +++ 
Sbjct: 1  MAKPMTKTQLVAALADEMGSDKKTAGAALDSVIAIITREVSAGGAVTLPGIGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R+ RN  T +++K +  +VV    +  LK  +  
Sbjct: 61 ERMVRNPATGEQMKKEADKVVKMTIAKALKDSVNG 95


>gi|304382433|ref|ZP_07364932.1| DNA-binding protein HU-beta [Prevotella marshii DSM 16973]
 gi|304336441|gb|EFM02678.1| DNA-binding protein HU-beta [Prevotella marshii DSM 16973]
          Length = 90

 Score = 93.4 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 35/65 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+   GL++ D+ + +      I D+ V G+ I +  F TF V ++ +R G
Sbjct: 1  MNKTELIDQIANGSGLTKVDARKALDATVKAIKDALVAGDKIALIGFGTFSVNERPAREG 60

Query: 65 RNLQT 69
           N  T
Sbjct: 61 INPAT 65


>gi|222080139|ref|YP_002540002.1| HNS-type DNA binding protein [Agrobacterium vitis S4]
 gi|221738784|gb|ACM39563.1| HNS-type DNA binding protein [Agrobacterium vitis S4]
          Length = 92

 Score = 93.4 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 40/89 (44%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+ E  L+R  +   V ++F  I D+A+      I SF  F +K    R GR
Sbjct: 3  TTNEIADKIASEQSLTRAQAKTIVESVFKHITDAALACAETSIPSFGKFKIKDTPERQGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N  T   +KI   + + F     +K  + 
Sbjct: 63 NPATGATIKIAASKKLTFTPGKAVKDALN 91


>gi|1280533|gb|AAC73071.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 93.4 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  I+         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   VTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT   VK+    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGVYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|237723843|ref|ZP_04554324.1| DNA-binding protein HU [Bacteroides sp. D4]
 gi|229437858|gb|EEO47935.1| DNA-binding protein HU [Bacteroides dorei 5_1_36/D4]
          Length = 94

 Score = 93.4 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 42/91 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S++VK IS   G+  K     V    NE+  S  + E + +  F +F VK++  +  
Sbjct: 1  MTKSEIVKEISARTGIDGKAVLAVVEGFMNEVKTSLGKEENVYLRGFGSFIVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN+  N  + I    +  FK S    K +  
Sbjct: 61 RNISKNTAMIIPAHNIPAFKPSDEFLKMVKQ 91


>gi|189460994|ref|ZP_03009779.1| hypothetical protein BACCOP_01641 [Bacteroides coprocola DSM
          17136]
 gi|198277723|ref|ZP_03210254.1| hypothetical protein BACPLE_03946 [Bacteroides plebeius DSM
          17135]
 gi|265768064|ref|ZP_06095446.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16]
 gi|319643873|ref|ZP_07998466.1| hypothetical protein HMPREF9011_04069 [Bacteroides sp. 3_1_40A]
 gi|189432333|gb|EDV01318.1| hypothetical protein BACCOP_01641 [Bacteroides coprocola DSM
          17136]
 gi|198269420|gb|EDY93690.1| hypothetical protein BACPLE_03946 [Bacteroides plebeius DSM
          17135]
 gi|263252315|gb|EEZ23851.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16]
 gi|317384614|gb|EFV65579.1| hypothetical protein HMPREF9011_04069 [Bacteroides sp. 3_1_40A]
          Length = 94

 Score = 93.4 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S++VK IS   G+  K     +    NE+  S  + E + +  F +F VK++  +  
Sbjct: 1  MTKSEIVKEISARTGIDGKAVLAVLEGFMNEVKTSLGKEENVYLRGFGSFIVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN+  N  + I    +  FK S    K +  
Sbjct: 61 RNISKNTTMIIPAHNIPAFKPSDEFLKMVKQ 91


>gi|41409122|ref|NP_961958.1| HupB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|254776259|ref|ZP_05217775.1| DNA-binding protein HU [Mycobacterium avium subsp. avium ATCC
          25291]
 gi|41397942|gb|AAS05572.1| HupB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|293652258|gb|ADE60770.1| laminin-binding histone-like protein [Mycobacterium avium subsp.
          paratuberculosis K-10]
 gi|293652260|gb|ADE60771.1| laminin-binding histone-like protein [Mycobacterium avium subsp.
          paratuberculosis]
 gi|293652262|gb|ADE60772.1| laminin-binding histone-like protein [Mycobacterium avium subsp.
          paratuberculosis]
 gi|293652264|gb|ADE60773.1| laminin-binding histone-like protein [Mycobacterium avium subsp.
          avium]
 gi|293652266|gb|ADE60774.1| laminin-binding histone-like protein [Mycobacterium avium]
          Length = 212

 Score = 93.4 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 50/94 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++    R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLNTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|3913404|sp|Q45722|DBH_BORTU RecName: Full=DNA-binding protein HBbu
 gi|1280607|gb|AAC73104.1| histone-like protein HBbu [Borrelia turicatae]
          Length = 108

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  IS         L +K     V   F E+ +S      I+  SF TF ++++
Sbjct: 9   VTKSDIVNQISLNIKNSNEKLEKKYIRLVVDAFFEELKNSLCLNNVIEFRSFGTFELRKR 68

Query: 60  GSRV-GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + V +D   V  F+    LK+R+  
Sbjct: 69  KGRQNARNPQTGEYVNVDDHHVAYFRPGKDLKERVWG 105


>gi|88854439|ref|ZP_01129106.1| DNA-binding HU protein [marine actinobacterium PHSC20C1]
 gi|88816247|gb|EAR26102.1| DNA-binding HU protein [marine actinobacterium PHSC20C1]
          Length = 96

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 41/90 (45%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K++ R++ V +++ + G S+   +  V   F  + +S   G  + I  +       + +R
Sbjct: 4  KSLNRTEFVAAVAAQSGQSQAAVSGVVDAFFAVLSESVGNGVKVSIPGWMAAEQTFREAR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           GRN QT + ++I     V   A S LK  
Sbjct: 64 TGRNPQTGEAIQIKASNGVKLSAGSKLKAA 93


>gi|71907279|ref|YP_284866.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB]
 gi|71846900|gb|AAZ46396.1| Histone-like bacterial DNA-binding protein [Dechloromonas
          aromatica RCB]
          Length = 73

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 36/66 (54%)

Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88
          V  L ++I  + V G  +++  F +F +  +  R+GRN +T  +V +  + V  FKA   
Sbjct: 5  VKELLDQIGQTLVAGNRVEVRGFGSFGLTYRPPRLGRNPKTGDKVAVPGKYVPHFKAGKE 64

Query: 89 LKKRIM 94
          L++ ++
Sbjct: 65 LRELVL 70


>gi|269120171|ref|YP_003308348.1| histone family protein DNA-binding protein [Sebaldella termitidis
          ATCC 33386]
 gi|268614049|gb|ACZ08417.1| histone family protein DNA-binding protein [Sebaldella termitidis
          ATCC 33386]
          Length = 91

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 41/73 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++ + +++ +K  G ++K S   V      +  + V+G  ++   + TF V+++ +R G
Sbjct: 1  MSKKEFIEAYAKSTGETKKRSEELVNAFLETVEKTLVKGNPVQFVGWGTFGVQKRAARKG 60

Query: 65 RNLQTNQEVKIDP 77
          RN QT +E+KI  
Sbjct: 61 RNPQTGKEIKIAA 73


>gi|222102443|ref|YP_002539482.1| HNS-type DNA binding protein [Agrobacterium vitis S4]
 gi|221739044|gb|ACM39777.1| HNS-type DNA binding protein [Agrobacterium vitis S4]
          Length = 92

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 40/90 (44%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+   GL++  +   V ++F  I D+A       I  F  F VK    R GR
Sbjct: 3  TTNEIADKIAANNGLTKVQAKGIVESVFKAIADAAGSDAETSIPGFGKFKVKTSPEREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N  T +++ +   + + F  +  LK  +  
Sbjct: 63 NPATGEKMTVAASKKLTFAPAKALKDALNK 92


>gi|297621554|ref|YP_003709691.1| Integration host factor subunit alpha (IHF- alpha) [Waddlia
           chondrophila WSU 86-1044]
 gi|297376855|gb|ADI38685.1| Integration host factor subunit alpha (IHF- alpha) [Waddlia
           chondrophila WSU 86-1044]
          Length = 110

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T+  L+ +IS++ G+   D    +    +++ D    GE ++   F  F V ++  ++
Sbjct: 9   TVTKKKLINAISQDKGIHPNDVRHVIQAFLDKMTDCLTNGERLEFRDFGVFEVVERKQKI 68

Query: 64  GRNLQT-NQEVKIDPRRVVVFKASSILKKRIMD 95
           GRN +  +  + I  R  V F     ++K I  
Sbjct: 69  GRNPKNASVPIVIPARPAVKFTPGKRMRKLIEK 101


>gi|209552051|ref|YP_002283967.1| histone family protein DNA-binding protein [Rhizobium
          leguminosarum bv. trifolii WSM2304]
 gi|209539644|gb|ACI59575.1| histone family protein DNA-binding protein [Rhizobium
          leguminosarum bv. trifolii WSM2304]
          Length = 92

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 38/90 (42%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +D+   I+ E  L++      V  +   I ++AV G    +  F  F VK+   R  R
Sbjct: 3  TTNDIADKIATEHSLTKTQGKAIVEAVIASITEAAVAGNETSLPGFGKFKVKETPERDAR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N  T   +K+   + + F  +  LK  +  
Sbjct: 63 NPATGATIKVAAAKKLAFTPAKALKDALNK 92


>gi|77464964|ref|YP_354468.1| DNA-binding protein HU, form N [Rhodobacter sphaeroides 2.4.1]
 gi|126460833|ref|YP_001041947.1| histone family protein DNA-binding protein [Rhodobacter
          sphaeroides ATCC 17029]
 gi|221640885|ref|YP_002527147.1| Histone family protein DNA-binding protein [Rhodobacter
          sphaeroides KD131]
 gi|332559863|ref|ZP_08414185.1| DNA-binding protein HU-beta [Rhodobacter sphaeroides WS8N]
 gi|77389382|gb|ABA80567.1| DNA-binding protein HU, form N [Rhodobacter sphaeroides 2.4.1]
 gi|126102497|gb|ABN75175.1| histone family protein DNA-binding protein [Rhodobacter
          sphaeroides ATCC 17029]
 gi|221161666|gb|ACM02646.1| Histone family protein DNA-binding protein [Rhodobacter
          sphaeroides KD131]
 gi|332277575|gb|EGJ22890.1| DNA-binding protein HU-beta [Rhodobacter sphaeroides WS8N]
          Length = 95

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 42/94 (44%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSK +T++ LV +++ E G  +K +   +  + + +      G A+ +        +++ 
Sbjct: 1  MSKPMTKTQLVATLADEMGSDKKTANAALDAIASIVAREVAAGGAVTLPGLGKVVCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           R  RN  T ++V     + V F  +  LK  + 
Sbjct: 61 ERQVRNPATGEQVTKAADKQVKFTIAKALKDSVN 94


>gi|238810006|dbj|BAH69796.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 98

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 44/92 (47%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K +T+ + V+ I++   +  + + ++       + +  +  + +++S   TF  K +  R
Sbjct: 6  KIMTKKEFVQKIAEMLEVPVRVADQYFDAFLFVLKEQLIAEDKVQLSDLGTFETKIRRGR 65

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
             N  TN+ +++  +RVV F  S  L+  + 
Sbjct: 66 ETINPFTNEPIQVPEKRVVKFTPSKYLRDIVN 97


>gi|1280553|gb|AAC73078.1| histone-like protein HBbu [Borrelia garinii]
 gi|1280555|gb|AAC73079.1| histone-like protein HBbu [Borrelia garinii]
          Length = 108

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           IT+SD+V  I          L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   ITKSDIVDQIFFNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|291280770|ref|YP_003497604.1| DNA-binding protein HU [Deferribacter desulfuricans SSM1]
 gi|290755472|dbj|BAI81848.1| DNA-binding protein HU [Deferribacter desulfuricans SSM1]
          Length = 90

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 38/90 (42%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +++  + +   + +KD    +      + +    G+ + + +   F   ++ +R G
Sbjct: 1  MKKEEIIALLVERTNMRKKDVKELLNAFEEIVLEGVKEGKKVPLGALGYFKKVERSARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N +T ++++I    V  F      K+ + 
Sbjct: 61 HNPKTGEKIQIPATVVPKFVPGKKFKEAVK 90


>gi|317487172|ref|ZP_07945973.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
 gi|316921573|gb|EFV42858.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
          Length = 109

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 48/105 (45%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           M+   T+ DLV+ I+K   +S  ++ R +  +   +    +   ++ +    T  V +  
Sbjct: 1   MASKSTKKDLVQHIAKALEVSPVEAERVMLVVMRYVRRQLLEDTSVILPGIGTLAVTETA 60

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           +R+GRN  T Q V I PR+ +  K S  LK+ +      R    D
Sbjct: 61  ARLGRNPHTGQPVPIPPRKTIKLKVSKDLKEAMEPSETVRTGGAD 105


>gi|311742216|ref|ZP_07716026.1| DNA-binding protein HU [Aeromicrobium marinum DSM 15272]
 gi|311314709|gb|EFQ84616.1| DNA-binding protein HU [Aeromicrobium marinum DSM 15272]
          Length = 92

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 46/89 (51%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           I+RSDLV +++++ G ++ ++   ++ L + + DS  +GE + I    +     + +R 
Sbjct: 2  AISRSDLVSALAEKAGTTKTEADAVLSALSDVLLDSVGKGEKVSIPGILSVERVSRAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN  T + ++I     V   A S LK  
Sbjct: 62 GRNPSTGETIEIPAGFGVKVSAGSKLKAA 90


>gi|255603750|ref|XP_002538109.1| DNA-binding protein HU, putative [Ricinus communis]
 gi|223513783|gb|EEF24275.1| DNA-binding protein HU, putative [Ricinus communis]
          Length = 92

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 38/90 (42%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+ +  L++  S   V  +F  I  +A  G    I  F  F VK   +R  R
Sbjct: 3  TTNEIADKIAADHKLTKVQSKAIVEAVFAAITGAATSGAETSIPGFGKFKVKDTPAREAR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N  T   +K+   + + F  +  LK  +  
Sbjct: 63 NPGTGATIKVAASKKLAFTPAKALKDALNK 92


>gi|254525351|ref|ZP_05137404.1| DNA-binding protein HU-beta [Stenotrophomonas sp. SKA14]
 gi|219718467|gb|EED36994.1| DNA-binding protein HU-beta [Stenotrophomonas sp. SKA14]
          Length = 71

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%)

Query: 37 CDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            +   G+A+ +  F TF V+ + +R GRN +T   +KI   +   FKA   LK  + 
Sbjct: 14 TKALKDGDAVTLVGFGTFQVRDRAARTGRNPKTGDTIKIAASKNPSFKAGKALKDAVN 71


>gi|332638320|ref|ZP_08417183.1| DNA-binding protein hu [Weissella cibaria KACC 11862]
          Length = 92

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 39/64 (60%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          +++L+  ++ + G ++ ++T+ V  L + I D   +GE + +  F TF V+++ +R GRN
Sbjct: 4  KTELIDLVAAKTGQAKSETTKTVNALLDVIKDQLAQGEKVALVGFGTFEVRERAARKGRN 63

Query: 67 LQTN 70
           QT 
Sbjct: 64 PQTG 67


>gi|212703101|ref|ZP_03311229.1| hypothetical protein DESPIG_01140 [Desulfovibrio piger ATCC
          29098]
 gi|212673367|gb|EEB33850.1| hypothetical protein DESPIG_01140 [Desulfovibrio piger ATCC
          29098]
          Length = 97

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 5  ITRSDLVKSISKEF------GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          +T+ DLV+++++         L + D    +  L +        G  + +        K 
Sbjct: 1  MTKEDLVRNVTERSRIHLGRSLCQADVEAVLQALKDVTAQELTAGGEVPLPGLGKLKTKD 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSIL 89
          + +R+GRN +T + V I  RRVVVF  S  L
Sbjct: 61 RAARMGRNPRTGEAVTIPARRVVVFAPSEKL 91


>gi|262382608|ref|ZP_06075745.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B]
 gi|262295486|gb|EEY83417.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B]
          Length = 95

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 44/92 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +LVK+++ +  +++ ++ RFV        ++     ++ +  F T    ++  R+G
Sbjct: 1  MNRRELVKTLADKMSVTQAEAMRFVQAWEETTTEALESDGSLMLLGFGTLSAWEQTERIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +      I  RR V FK   +L KR+   
Sbjct: 61 RNPRNGVAYMIRARRSVKFKPGKLLLKRLNAS 92


>gi|226365961|ref|YP_002783744.1| DNA-binding protein HU [Rhodococcus opacus B4]
 gi|226244451|dbj|BAH54799.1| putative DNA-binding protein HU [Rhodococcus opacus B4]
          Length = 231

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  RG+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTEKLGTDRRTATEAVEHVVDTIVRAVHRGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  I    +
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVIAGGQK 94


>gi|111023460|ref|YP_706432.1| DNA-binding protein [Rhodococcus jostii RHA1]
 gi|110822990|gb|ABG98274.1| DNA-binding protein [Rhodococcus jostii RHA1]
          Length = 230

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  RG+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTEKLGTDRRTATEAVEHVVDTIVRAVHRGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  I    +
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVIAGGQK 94


>gi|288926928|ref|ZP_06420826.1| DNA-binding protein HU-beta [Prevotella buccae D17]
 gi|315607055|ref|ZP_07882059.1| DNA-binding protein HU-beta [Prevotella buccae ATCC 33574]
 gi|288336287|gb|EFC74670.1| DNA-binding protein HU-beta [Prevotella buccae D17]
 gi|315251109|gb|EFU31094.1| DNA-binding protein HU-beta [Prevotella buccae ATCC 33574]
          Length = 91

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 37/65 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S+L++ I+    LS+ D+ + +    N I D+ V G+ I++  F TF V ++ +R G
Sbjct: 1  MNKSELIEKIAATAELSKADAKKALDATVNAIKDALVAGDKIQLVGFGTFAVSERPAREG 60

Query: 65 RNLQT 69
           N  T
Sbjct: 61 INPAT 65


>gi|83319387|ref|YP_424299.1| DNA-binding protein, HU [Mycoplasma capricolum subsp. capricolum
          ATCC 27343]
 gi|83283273|gb|ABC01205.1| DNA-binding protein, HU [Mycoplasma capricolum subsp. capricolum
          ATCC 27343]
          Length = 92

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 49/92 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +L+  I+ E  +S+K+    V  +F  I  + +  + + IS F  F + QK SR G
Sbjct: 1  MTKKELINKIALETEVSKKEVNLIVKKVFELISKNLLDKKEVLISDFGKFTILQKVSRKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N  T Q++ I   + V FK S  LK+ ++ +
Sbjct: 61 VNPITRQKMVIPASKTVKFKPSKQLKELLIKE 92


>gi|302343037|ref|YP_003807566.1| histone family protein DNA-binding protein [Desulfarculus baarsii
          DSM 2075]
 gi|301639650|gb|ADK84972.1| histone family protein DNA-binding protein [Desulfarculus baarsii
          DSM 2075]
          Length = 93

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 5  ITRSDLVKSISKEFGL--SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + DL+ +++ + G       + R V   F  + ++  RGE ++I+ F  + V+ + +R
Sbjct: 1  MNKKDLIAAVAGKLGYGPCAPVTGRVVEAAFEAMAEALGRGEQVRINGFGVWRVRGRKAR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN +T + ++I     V+F+ +  LK R+ 
Sbjct: 61 EGRNPRTGESIQIPAASGVIFRPADALKGRVN 92


>gi|84685968|ref|ZP_01013864.1| DNA-binding protein HU [Maritimibacter alkaliphilus HTCC2654]
 gi|84666061|gb|EAQ12535.1| DNA-binding protein HU [Rhodobacterales bacterium HTCC2654]
          Length = 95

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 47/94 (50%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +T++ LV ++++E    +K ++  +  + + I      G A+ +      + +++ 
Sbjct: 1  MAKPMTKTQLVAALAEEMDTDKKSASAALDAITSIITKEVSGGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           R+ RN  T +++K +  +VV    +  LK  + 
Sbjct: 61 ERMVRNPATGEQIKKEADKVVKMTIAKALKDSVN 94


>gi|78045437|ref|YP_361687.1| histone-like family DNA-binding protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78033941|emb|CAJ19940.1| histone-like family DNA-binding protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 99

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 48/97 (49%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +S L  +I+    +++ +++  V T+   +    +    + I+ F  F ++ K  R  
Sbjct: 1   MNKSALASAIAHRHAMTQAEASSIVDTVTEVVALMLLEHGRVNINRFGRFRLQHKPPRQA 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           RN +T + V++  R  V F A+  LK+R +D   G +
Sbjct: 61  RNPKTGETVQVGERVAVQFTAADELKRRFLDSKNGNR 97


>gi|146278828|ref|YP_001168987.1| histone family protein DNA-binding protein [Rhodobacter
          sphaeroides ATCC 17025]
 gi|145557069|gb|ABP71682.1| histone family protein DNA-binding protein [Rhodobacter
          sphaeroides ATCC 17025]
          Length = 95

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 42/94 (44%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSK +T++ LV +++ E G  +K +   +  + + +      G A+ +        +++ 
Sbjct: 1  MSKPMTKTQLVATLADEMGADKKTANAALDAIASIVAREVAAGGAVTLPGLGKVVCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           R  RN  T ++V     + V F  +  LK  + 
Sbjct: 61 ERQVRNPATGEQVTKAADKQVKFTIAKALKDSVN 94


>gi|15610123|ref|NP_217502.1| DNA-binding protein HU [Mycobacterium tuberculosis H37Rv]
 gi|15842542|ref|NP_337579.1| DNA binding protein HU, putative [Mycobacterium tuberculosis
          CDC1551]
 gi|31794162|ref|NP_856655.1| DNA-binding protein HU [Mycobacterium bovis AF2122/97]
 gi|148662836|ref|YP_001284359.1| DNA-binding protein hupB [Mycobacterium tuberculosis H37Ra]
 gi|148824176|ref|YP_001288930.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
          tuberculosis F11]
 gi|167969993|ref|ZP_02552270.1| DNA-binding protein HU [Mycobacterium tuberculosis H37Ra]
 gi|215404970|ref|ZP_03417151.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis 02_1987]
 gi|215412830|ref|ZP_03421542.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis
          94_M4241A]
 gi|215428438|ref|ZP_03426357.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis T92]
 gi|215431936|ref|ZP_03429855.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis EAS054]
 gi|215447253|ref|ZP_03434005.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis T85]
 gi|218754746|ref|ZP_03533542.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis GM 1503]
 gi|219559018|ref|ZP_03538094.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis T17]
 gi|253797921|ref|YP_003030922.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          KZN 1435]
 gi|254233069|ref|ZP_04926396.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
          tuberculosis C]
 gi|254365619|ref|ZP_04981664.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
          tuberculosis str. Haarlem]
 gi|254552063|ref|ZP_05142510.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis '98-R604
          INH-RIF-EM']
 gi|260188010|ref|ZP_05765484.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis CPHL_A]
 gi|260202128|ref|ZP_05769619.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis T46]
 gi|289444550|ref|ZP_06434294.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          T46]
 gi|289448658|ref|ZP_06438402.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          CPHL_A]
 gi|289553224|ref|ZP_06442434.1| predicted protein [Mycobacterium tuberculosis KZN 605]
 gi|289571185|ref|ZP_06451412.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          T17]
 gi|289746790|ref|ZP_06506168.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
          tuberculosis 02_1987]
 gi|289751663|ref|ZP_06511041.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          T92]
 gi|289755102|ref|ZP_06514480.1| predicted protein [Mycobacterium tuberculosis EAS054]
 gi|289759111|ref|ZP_06518489.1| predicted protein [Mycobacterium tuberculosis T85]
 gi|289763166|ref|ZP_06522544.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
          tuberculosis GM 1503]
 gi|294993927|ref|ZP_06799618.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis 210]
 gi|297635611|ref|ZP_06953391.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis KZN
          4207]
 gi|297732609|ref|ZP_06961727.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis KZN
          R506]
 gi|298526456|ref|ZP_07013865.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
          tuberculosis 94_M4241A]
 gi|306777279|ref|ZP_07415616.1| hypothetical protein TMAG_01192 [Mycobacterium tuberculosis
          SUMu001]
 gi|306781190|ref|ZP_07419527.1| hypothetical protein TMBG_03136 [Mycobacterium tuberculosis
          SUMu002]
 gi|306785829|ref|ZP_07424151.1| hypothetical protein TMCG_02241 [Mycobacterium tuberculosis
          SUMu003]
 gi|306794680|ref|ZP_07432982.1| hypothetical protein TMEG_02256 [Mycobacterium tuberculosis
          SUMu005]
 gi|306798923|ref|ZP_07437225.1| hypothetical protein TMFG_00187 [Mycobacterium tuberculosis
          SUMu006]
 gi|306804768|ref|ZP_07441436.1| hypothetical protein TMHG_02196 [Mycobacterium tuberculosis
          SUMu008]
 gi|306808962|ref|ZP_07445630.1| hypothetical protein TMGG_02527 [Mycobacterium tuberculosis
          SUMu007]
 gi|306969060|ref|ZP_07481721.1| hypothetical protein TMIG_02492 [Mycobacterium tuberculosis
          SUMu009]
 gi|306973397|ref|ZP_07486058.1| hypothetical protein TMJG_01980 [Mycobacterium tuberculosis
          SUMu010]
 gi|307081105|ref|ZP_07490275.1| hypothetical protein TMKG_03422 [Mycobacterium tuberculosis
          SUMu011]
 gi|307085709|ref|ZP_07494822.1| hypothetical protein TMLG_01487 [Mycobacterium tuberculosis
          SUMu012]
 gi|313659941|ref|ZP_07816821.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis KZN
          V2475]
 gi|6014921|sp|P95109|DBH_MYCTU RecName: Full=DNA-binding protein HU homolog; AltName: Full=21
          kDa laminin-2-binding protein; AltName: Full=28 kDa
          iron-regulated protein; Short=Irep-28; AltName:
          Full=Histone-like protein; Short=Hlp
 gi|38605697|sp|Q9XB18|DBH_MYCBO RecName: Full=DNA-binding protein HU homolog; AltName:
          Full=Histone-like protein; Short=Hlp
 gi|1694845|emb|CAB05427.1| PROBABLE DNA-BINDING PROTEIN HU HOMOLOG HUPB (HISTONE-LIKE
          PROTEIN) (HLP) (21-KDA LAMININ-2-BINDING PROTEIN)
          [Mycobacterium tuberculosis H37Rv]
 gi|13882853|gb|AAK47393.1| DNA binding protein HU, putative [Mycobacterium tuberculosis
          CDC1551]
 gi|31619757|emb|CAD96697.1| PROBABLE DNA-BINDING PROTEIN HU HOMOLOG HUPB (HISTONE-LIKE
          PROTEIN) (HLP) (21-KDA LAMININ-2-BINDING PROTEIN)
          [Mycobacterium bovis AF2122/97]
 gi|124602128|gb|EAY61138.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
          tuberculosis C]
 gi|134151132|gb|EBA43177.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
          tuberculosis str. Haarlem]
 gi|148506988|gb|ABQ74797.1| DNA-binding protein hupB [Mycobacterium tuberculosis H37Ra]
 gi|148722703|gb|ABR07328.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
          tuberculosis F11]
 gi|253319424|gb|ACT24027.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          KZN 1435]
 gi|289417469|gb|EFD14709.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          T46]
 gi|289421616|gb|EFD18817.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          CPHL_A]
 gi|289437856|gb|EFD20349.1| predicted protein [Mycobacterium tuberculosis KZN 605]
 gi|289544939|gb|EFD48587.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          T17]
 gi|289687318|gb|EFD54806.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
          tuberculosis 02_1987]
 gi|289692250|gb|EFD59679.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          T92]
 gi|289695689|gb|EFD63118.1| predicted protein [Mycobacterium tuberculosis EAS054]
 gi|289710672|gb|EFD74688.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
          tuberculosis GM 1503]
 gi|289714675|gb|EFD78687.1| predicted protein [Mycobacterium tuberculosis T85]
 gi|298496250|gb|EFI31544.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
          tuberculosis 94_M4241A]
 gi|308214329|gb|EFO73728.1| hypothetical protein TMAG_01192 [Mycobacterium tuberculosis
          SUMu001]
 gi|308325973|gb|EFP14824.1| hypothetical protein TMBG_03136 [Mycobacterium tuberculosis
          SUMu002]
 gi|308329504|gb|EFP18355.1| hypothetical protein TMCG_02241 [Mycobacterium tuberculosis
          SUMu003]
 gi|308337000|gb|EFP25851.1| hypothetical protein TMEG_02256 [Mycobacterium tuberculosis
          SUMu005]
 gi|308340814|gb|EFP29665.1| hypothetical protein TMFG_00187 [Mycobacterium tuberculosis
          SUMu006]
 gi|308344677|gb|EFP33528.1| hypothetical protein TMGG_02527 [Mycobacterium tuberculosis
          SUMu007]
 gi|308348627|gb|EFP37478.1| hypothetical protein TMHG_02196 [Mycobacterium tuberculosis
          SUMu008]
 gi|308353353|gb|EFP42204.1| hypothetical protein TMIG_02492 [Mycobacterium tuberculosis
          SUMu009]
 gi|308357197|gb|EFP46048.1| hypothetical protein TMJG_01980 [Mycobacterium tuberculosis
          SUMu010]
 gi|308361151|gb|EFP50002.1| hypothetical protein TMKG_03422 [Mycobacterium tuberculosis
          SUMu011]
 gi|308364744|gb|EFP53595.1| hypothetical protein TMLG_01487 [Mycobacterium tuberculosis
          SUMu012]
 gi|323718365|gb|EGB27539.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          CDC1551A]
 gi|326904600|gb|EGE51533.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          W-148]
 gi|328457696|gb|AEB03119.1| hypothetical protein TBSG_00990 [Mycobacterium tuberculosis KZN
          4207]
          Length = 214

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|324998717|ref|ZP_08119829.1| hypothetical protein PseP1_08129 [Pseudonocardia sp. P1]
          Length = 98

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ LV +++   G  R+ +   V  + + I D+   G  + ++ F  F  +++  R  
Sbjct: 1  MNKAQLVDALTTRLG-DRRAAAEAVDAMVDVIVDTVGAGGTVTLTGFGVFEPRRRAPRTA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +T + V +    V  F+  +  K+R+ D 
Sbjct: 60 RNPRTGETVPVAETVVPSFRPGAAFKERVADS 91


>gi|87248001|gb|ABD36054.1| Hbb [Borrelia lusitaniae]
 gi|87248003|gb|ABD36055.1| Hbb [Borrelia lusitaniae]
          Length = 108

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   VTKSDVVNQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|323345506|ref|ZP_08085729.1| DNA-binding protein HU-beta [Prevotella oralis ATCC 33269]
 gi|323093620|gb|EFZ36198.1| DNA-binding protein HU-beta [Prevotella oralis ATCC 33269]
          Length = 97

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 47/94 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + +  +S+  G +++++   V  + +    S   GE + I  F TF +K++  RV 
Sbjct: 1  MNNKEFISELSQRSGYTQENTQNLVRGIIDAFGISFDDGEDVHIGGFGTFELKKRTERVV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           N  T Q + + P+ V+ F+  + +K+++ +   
Sbjct: 61 VNPSTGQRMMVPPKLVLTFRPVASIKEKLKNGGH 94


>gi|312140481|ref|YP_004007817.1| histone-like bacterial DNA-binding protein hupb [Rhodococcus equi
          103S]
 gi|325675901|ref|ZP_08155585.1| histone family DNA-binding protein [Rhodococcus equi ATCC 33707]
 gi|311889820|emb|CBH49137.1| histone-like bacterial DNA-binding protein HupB [Rhodococcus equi
          103S]
 gi|325553872|gb|EGD23550.1| histone family DNA-binding protein [Rhodococcus equi ATCC 33707]
          Length = 242

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 50/94 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ ++  V  + + I  +   GE++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTEKLGTDRRTASEAVEHVVDTIVRAVHAGESVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  I    +
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKALIAGGQK 94


>gi|260206310|ref|ZP_05773801.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis K85]
 gi|289575693|ref|ZP_06455920.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          K85]
 gi|289540124|gb|EFD44702.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
          K85]
          Length = 214

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|121638867|ref|YP_979091.1| putative DNA-binding protein HU homolog hupB [Mycobacterium bovis
          BCG str. Pasteur 1173P2]
 gi|224991359|ref|YP_002646048.1| putative DNA-binding protein HU homolog [Mycobacterium bovis BCG
          str. Tokyo 172]
 gi|4996103|dbj|BAA78330.1| MDP1 [Mycobacterium bovis]
 gi|121494515|emb|CAL72996.1| Probable DNA-binding protein HU homolog hupB [Mycobacterium bovis
          BCG str. Pasteur 1173P2]
 gi|224774474|dbj|BAH27280.1| putative DNA-binding protein HU homolog [Mycobacterium bovis BCG
          str. Tokyo 172]
 gi|264669723|gb|ACY72210.1| laminin-binding histone-like protein [Mycobacterium bovis BCG]
          Length = 205

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|221632837|ref|YP_002522059.1| DNA-binding protein HU 1 [Thermomicrobium roseum DSM 5159]
 gi|221156064|gb|ACM05191.1| DNA-binding protein HU 1 [Thermomicrobium roseum DSM 5159]
          Length = 92

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 49/91 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +SDL+K +++     +      V  +F  I ++  +GE + I+ F TF V ++  R G
Sbjct: 1  MRKSDLIKVVAERTNARQSQVAPIVNAVFQTIQETLAKGEEVSIAGFGTFRVSERARRRG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +TN+ ++I  RR   F+  + LK+ +  
Sbjct: 61 RNPRTNEPIEIPARRSPSFRPGTQLKRAVAG 91


>gi|283458729|ref|YP_003363367.1| nucleoid DNA-binding protein [Rothia mucilaginosa DY-18]
 gi|283134782|dbj|BAI65547.1| bacterial nucleoid DNA-binding protein [Rothia mucilaginosa
          DY-18]
          Length = 95

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K   R++LV  ++++ G S+      +  +F     S  +GE I I  +       + 
Sbjct: 1  MAK--NRTELVAEVAEKSGKSQATVNAVLDAVFQVFESSVSKGEKITIPGWMAIERTDRA 58

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASS 87
          +R GRN QT + ++I     V   A S
Sbjct: 59 ARTGRNPQTGETIQIPAGHGVKLTAGS 85


>gi|237712971|ref|ZP_04543452.1| DNA-binding protein HU [Bacteroides sp. D1]
 gi|237717786|ref|ZP_04548267.1| DNA-binding protein HU [Bacteroides sp. 2_2_4]
 gi|256842595|ref|ZP_05548096.1| integration host factor, beta subunit [Parabacteroides sp. D13]
 gi|262409581|ref|ZP_06086122.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22]
 gi|229446946|gb|EEO52737.1| DNA-binding protein HU [Bacteroides sp. D1]
 gi|229452885|gb|EEO58676.1| DNA-binding protein HU [Bacteroides sp. 2_2_4]
 gi|256735732|gb|EEU49065.1| integration host factor, beta subunit [Parabacteroides sp. D13]
 gi|262352595|gb|EEZ01694.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22]
          Length = 94

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 40/85 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+S++VK IS   G+  K     V    NE+  S  + E + +  F +F VK++  +  
Sbjct: 1  MTKSEIVKEISARTGIDGKAVLAVVEGFMNEVKTSLGKEENVYLRGFGSFIVKKRAQKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  + I    +  FK S   
Sbjct: 61 RNISKNTTMIIPAHNIPAFKPSDEF 85


>gi|1280547|gb|AAC73087.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|1280549|gb|AAC73088.1| histone-like protein HBbu [Borrelia burgdorferi]
 gi|1280551|gb|AAC73089.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   VTKSDVVNQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|42519971|ref|NP_965886.1| HU family DNA-binding protein [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|225677276|ref|ZP_03788259.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|42409708|gb|AAS13820.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|225590696|gb|EEH11940.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 101

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 51/86 (59%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           +   I++E GLS++DS   +  + +EI  S V+   +KISSF TF VK+K  R G    T
Sbjct: 16  IAGDINQEIGLSKEDSVSIIDDILDEIKTSLVKDGIVKISSFGTFLVKKKKERPGNIPNT 75

Query: 70  NQEVKIDPRRVVVFKASSILKKRIMD 95
           +++V I  R  V F+ S I+KK I +
Sbjct: 76  SEKVMIQARNSVSFRPSKIIKKSINN 101


>gi|225158968|ref|ZP_03725280.1| histone family protein DNA-binding protein [Opitutaceae bacterium
          TAV2]
 gi|224802463|gb|EEG20723.1| histone family protein DNA-binding protein [Opitutaceae bacterium
          TAV2]
          Length = 102

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M   +T+ ++V  I ++ G  +K+    V    + I  +   G  +++ +F    V+++ 
Sbjct: 1  MPANLTKREIVLEIYEKTGFPQKEIVTSVQMTLDIIMRALSEGRNVELRNFGVLEVQRRK 60

Query: 61 SRVGRNLQTNQ-EVKIDPRRVVVFKASSILKKRIMD 95
          SR+GRN    + EV I  R VV FK+  ILK+ +  
Sbjct: 61 SRIGRNPNKPEAEVVIPERAVVKFKSGKILKQLLKK 96


>gi|116254928|ref|YP_770763.1| putative DNA-binding protein HU-alpha [Rhizobium leguminosarum
          bv. viciae 3841]
 gi|115259576|emb|CAK11544.1| putative DNA-binding protein Hu-alpha [Rhizobium leguminosarum
          bv. viciae 3841]
          Length = 92

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+ E  L++      V  +   I ++AV G    +  F  F VK    R  R
Sbjct: 3  TTNEIADKIAGEHSLTKAQGKAIVEAVIASITEAAVAGNETSLPGFGKFKVKATPEREAR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N  T   +K+   + + F  +  LK  +  
Sbjct: 63 NPSTGATIKVAAAKKLAFTPAKALKDALNK 92


>gi|254461410|ref|ZP_05074826.1| DNA-binding protein HU [Rhodobacterales bacterium HTCC2083]
 gi|206677999|gb|EDZ42486.1| DNA-binding protein HU [Rhodobacteraceae bacterium HTCC2083]
          Length = 95

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 46/95 (48%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +T++ LV ++++E G  +K S   +  +   I      G A+ +      + +++ 
Sbjct: 1  MAKPMTKTQLVAALAEEMGADKKASGAALDAVCALITREVSGGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R+ RN  T +++K D  +VV    +  LK  +  
Sbjct: 61 ERMVRNPATGEQIKKDADKVVKMTIAKALKDSVNG 95


>gi|261749189|ref|YP_003256874.1| DNA-binding protein HU [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
 gi|261497281|gb|ACX83731.1| DNA-binding protein HU [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
          Length = 97

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 48/97 (49%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D++  I  E G  R D+ + + T   +I  S   GE + +  F +F +K +  ++G
Sbjct: 1   MTKADIITEIISETGSERIDTQKVIETFMKKIKQSLTSGENVYLRGFGSFIIKYRAKKLG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           R++  +  + I    +  FK +    + +  ++  +K
Sbjct: 61  RHISKDMSIVIPAHNIPAFKPAKAFTELVKKNVPIKK 97


>gi|189461332|ref|ZP_03010117.1| hypothetical protein BACCOP_01982 [Bacteroides coprocola DSM
          17136]
 gi|189431861|gb|EDV00846.1| hypothetical protein BACCOP_01982 [Bacteroides coprocola DSM
          17136]
          Length = 96

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 49/91 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   +L+  +S+  G + KD+ R +T++   + +    G+ I I  F TF VK+K  R+ 
Sbjct: 1  MNNKELIGELSRRLGYTNKDAARLLTSVTGIMGEELQEGKVIAIQDFGTFEVKKKMERIT 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N  T Q   + P+ ++ F+ S++ K+R+  
Sbjct: 61 VNPVTKQRFLVPPKLILNFRPSNLWKERLKK 91


>gi|229493365|ref|ZP_04387154.1| DNA-binding protein [Rhodococcus erythropolis SK121]
 gi|229319681|gb|EEN85513.1| DNA-binding protein [Rhodococcus erythropolis SK121]
          Length = 183

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  RGE++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTEKLGSDRRTATDAVEHVVDTIVRAVHRGESVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  I    +
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVIAGGQK 94


>gi|84503484|ref|ZP_01001539.1| DNA-binding protein HU, form N [Oceanicola batsensis HTCC2597]
 gi|84388162|gb|EAQ01115.1| DNA-binding protein HU, form N [Oceanicola batsensis HTCC2597]
          Length = 95

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 48/94 (51%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +T++ LV +++ E G  +K +   +  L N I      G A+ I     F+ +++ 
Sbjct: 1  MAKPLTKTQLVAALADELGSDKKTAGAALDALANVITKEVSGGGAVAIPGVGKFYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           R+ RN  TN+++K +  RVV    +  LK  + 
Sbjct: 61 ERMVRNPATNEQIKKEADRVVKVTIAKALKDSVN 94


>gi|320333649|ref|YP_004170360.1| histone family protein DNA-binding protein [Deinococcus
           maricopensis DSM 21211]
 gi|319754938|gb|ADV66695.1| histone family protein DNA-binding protein [Deinococcus
           maricopensis DSM 21211]
          Length = 122

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 44/84 (52%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
           ++ ++  ++ +  L++K +   V T+ + + ++   G+++ +    TF V +  +R G  
Sbjct: 36  KTQIIDLVADQTSLNKKQAAEAVATMLDVVVEALRDGKSVGLPGLGTFSVAKTAARTGVK 95

Query: 67  LQTNQEVKIDPRRVVVFKASSILK 90
             T++ + I   + V FK +S LK
Sbjct: 96  PGTSERITIPAGKKVRFKVASTLK 119


>gi|253565663|ref|ZP_04843118.1| DNA-binding protein HU [Bacteroides sp. 3_2_5]
 gi|251945942|gb|EES86349.1| DNA-binding protein HU [Bacteroides sp. 3_2_5]
          Length = 96

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   +    +S+  G + K ++  +T+L ++I      G AI I  F TF VK+K  R+ 
Sbjct: 1  MNNKEFTSELSRRLGYNTKYTSELITSLLSDITQELQEGNAIGIQGFGTFEVKKKAERIV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N  T   + + P+ V+ FK S ILK +  +
Sbjct: 61 INPVTKLRLLVPPKLVLAFKPSPILKDKFKE 91


>gi|163745273|ref|ZP_02152633.1| DNA-binding protein HU [Oceanibulbus indolifex HEL-45]
 gi|161382091|gb|EDQ06500.1| DNA-binding protein HU [Oceanibulbus indolifex HEL-45]
          Length = 95

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 46/95 (48%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +T++ LV ++++E    +K +   +  + N I      G A+ +      + +++ 
Sbjct: 1  MAKPMTKTQLVAALAEEMDTDKKSAGAALDAVCNLITREVSAGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R+ RN  T ++ K D  +VV    +  LK  + +
Sbjct: 61 ERMVRNPATGEQFKKDADKVVKMTIAKALKDSVNE 95


>gi|313185101|gb|ADR50115.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +++SD+V  IS         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   LSKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|281424724|ref|ZP_06255637.1| DNA-binding protein HU-beta [Prevotella oris F0302]
 gi|299142061|ref|ZP_07035195.1| DNA-binding protein HU-beta (NS1) (HU-1) [Prevotella oris C735]
 gi|281401094|gb|EFB31925.1| DNA-binding protein HU-beta [Prevotella oris F0302]
 gi|298576523|gb|EFI48395.1| DNA-binding protein HU-beta (NS1) (HU-1) [Prevotella oris C735]
          Length = 91

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 35/63 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+   GLS+ D+ + +      I ++ V G+ I++  F TF V ++ +R G
Sbjct: 1  MNKTELIDKIAAGAGLSKADAKKALDATTAAIKEALVAGDKIQLVGFGTFSVNERPAREG 60

Query: 65 RNL 67
           N 
Sbjct: 61 INP 63


>gi|225848149|ref|YP_002728312.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643798|gb|ACN98848.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 100

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 8/99 (8%)

Query: 5  ITRSDLVKSISKEFGLS----RKDSTRFVTTLFNEICDSA----VRGEAIKISSFATFHV 56
          + R+D+V  I K+  L+    +++  + V   F+ I +        G+ + IS F TF +
Sbjct: 1  MKRADIVNMIHKDKDLNLSLDKREIHKIVNDTFDMISEYLTTDIKEGKKVMISGFGTFII 60

Query: 57 KQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          K++  +VGRN +T +E  I  R  + FKA   LKK+I  
Sbjct: 61 KRRKGKVGRNPKTGEEKLIPDRLGISFKAGKELKKKINQ 99


>gi|218258078|ref|ZP_03474505.1| hypothetical protein PRABACTJOHN_00158 [Parabacteroides johnsonii
          DSM 18315]
 gi|218225797|gb|EEC98447.1| hypothetical protein PRABACTJOHN_00158 [Parabacteroides johnsonii
          DSM 18315]
          Length = 91

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + RS L+  +SK+ GL +KD  R +  +   I      G+ I +  F +F  + + SR  
Sbjct: 1  MNRSQLINILSKKTGLDKKDVKRTIDEMQKLIVQEVKEGQRICLHGFGSFKPRFQSSRPA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN ++   V++ PR ++ FK +  L + +  
Sbjct: 61 RNPKSGTAVQLSPRTIIHFKCAPHLLELMNK 91


>gi|224534210|ref|ZP_03674788.1| DNA-binding protein HU [Borrelia spielmanii A14S]
 gi|73762238|gb|AAZ83607.1| Hbb [Borrelia spielmanii]
 gi|74476805|gb|ABA08453.1| Hbb [Borrelia spielmanii]
 gi|74476807|gb|ABA08454.1| Hbb [Borrelia spielmanii]
 gi|74476809|gb|ABA08455.1| Hbb [Borrelia spielmanii]
 gi|78482926|emb|CAJ20126.1| hbb protein [Borrelia spielmanii]
 gi|78482928|emb|CAJ20127.1| hbb protein [Borrelia spielmanii]
 gi|224514312|gb|EEF84628.1| DNA-binding protein HU [Borrelia spielmanii A14S]
          Length = 108

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           IT+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFQELKSNLCLNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105


>gi|308190236|ref|YP_003923167.1| DNA-binding protein HU [Mycoplasma fermentans JER]
 gi|319777603|ref|YP_004137254.1| bacterial nucleoid DNA-binding protein [Mycoplasma fermentans
          M64]
 gi|307624978|gb|ADN69283.1| putative DNA-binding protein HU [Mycoplasma fermentans JER]
 gi|318038678|gb|ADV34877.1| Bacterial nucleoid DNA-binding protein [Mycoplasma fermentans
          M64]
          Length = 91

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 43/90 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V+ I++   +  + + ++       + +  +  + +++S   TF  K +  R  
Sbjct: 1  MTKKEFVQKIAEMLEVPVRVADQYFDAFLFVLKEQLIAEDKVQLSDLGTFETKIRRGRET 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  TN+ +++  +RVV F  S  L+  + 
Sbjct: 61 INPFTNEPIQVPEKRVVKFTPSKYLRDIVN 90


>gi|257463408|ref|ZP_05627803.1| DNA-binding protein HU [Fusobacterium sp. D12]
 gi|317060975|ref|ZP_07925460.1| DNA-binding protein HU [Fusobacterium sp. D12]
 gi|313686651|gb|EFS23486.1| DNA-binding protein HU [Fusobacterium sp. D12]
          Length = 91

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLS-RKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+ +  K +      S + ++ R + T+F+ + +  +R  +  I+++    V ++  R+
Sbjct: 1  MTKKEFAKVLFDNGVYSSKAEAERNIETIFSLMEECIIRDGSFSITNWGKLEVVERAPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +EVKI  R+ + F+      +++ 
Sbjct: 61 GRNPKTGEEVKIPSRKSIKFRPGKAFLEKLN 91


>gi|284040813|ref|YP_003390743.1| histone family protein DNA-binding protein [Spirosoma linguale DSM
           74]
 gi|283820106|gb|ADB41944.1| histone family protein DNA-binding protein [Spirosoma linguale DSM
           74]
          Length = 100

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 52/100 (52%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++D++  IS + G+ + + T  + T F+ + DS   GE I +  F +F  K++  +V 
Sbjct: 1   MTKADVIAEISDKTGIDKAEVTNTLETFFSVVKDSLAEGENIYVRGFGSFINKKRAKKVA 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           RN+  N  + ID   +  FK + +  +++    + +   +
Sbjct: 61  RNISKNTAMVIDEHFIPSFKPAKVFVEQVKTSDKAKVAAE 100


>gi|257451617|ref|ZP_05616916.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
 gi|257466933|ref|ZP_05631244.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563]
 gi|315918076|ref|ZP_07914316.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563]
 gi|317058182|ref|ZP_07922667.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
 gi|313683858|gb|EFS20693.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
 gi|313691951|gb|EFS28786.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563]
          Length = 91

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLS-RKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+ +  K +      S + ++ R + T+F+ + +  +   +  I+++    V ++  R+
Sbjct: 1  MTKKEFAKVLFDNGVYSSKAEAERNIETIFSLMEECIINDGSFSITNWGKLEVVERAPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +EVKI  R+ + F+      +++ 
Sbjct: 61 GRNPKTGEEVKIPSRKSIKFRPGKAFLEKLN 91


>gi|240168953|ref|ZP_04747612.1| hypothetical protein MkanA1_06550 [Mycobacterium kansasii ATCC
          12478]
          Length = 217

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    +
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVAGAQK 94


>gi|220923150|ref|YP_002498452.1| histone family protein DNA-binding protein [Methylobacterium
          nodulans ORS 2060]
 gi|219947757|gb|ACL58149.1| histone family protein DNA-binding protein [Methylobacterium
          nodulans ORS 2060]
          Length = 90

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 42/90 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+K+I+ + G+S    ++ +    +    S   G+ + +         ++ +R G
Sbjct: 1  MNKPDLLKAIAAKAGVSEAIGSKVLAAFGDIATQSLKSGDDVPLPGLGKLVTVRQEARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N +T Q ++I  R V   +AS+ L   + 
Sbjct: 61 HNPRTGQPLQIPARLVPKLRASTTLHDALN 90


>gi|150010105|ref|YP_001304848.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC
          8503]
 gi|255012635|ref|ZP_05284761.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_7]
 gi|301308155|ref|ZP_07214109.1| DNA-binding protein HU [Bacteroides sp. 20_3]
 gi|149938529|gb|ABR45226.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC
          8503]
 gi|300833625|gb|EFK64241.1| DNA-binding protein HU [Bacteroides sp. 20_3]
          Length = 95

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 44/92 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +LVK+++ +  +++ ++ RFV        ++     ++ +  F T    ++  R+G
Sbjct: 1  MNRRELVKTLADKLSVTQAEAMRFVQAWEETTTEALESDGSLMLLGFGTLSAWEQTERIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +      I  R+ V FK   +L K++   
Sbjct: 61 RNPKNGVAYMIRARKSVKFKPGKLLLKQLNAS 92


>gi|226305897|ref|YP_002765857.1| DNA-binding protein HU [Rhodococcus erythropolis PR4]
 gi|226185014|dbj|BAH33118.1| putative DNA-binding protein HU [Rhodococcus erythropolis PR4]
          Length = 228

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  RGE++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTEKLGSDRRTATDAVEHVVDTIVRAVHRGESVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  I    +
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVIAGGQK 94


>gi|163841555|ref|YP_001625960.1| DNA-binding protein HU [Renibacterium salmoninarum ATCC 33209]
 gi|162955031|gb|ABY24546.1| DNA-binding protein HU [Renibacterium salmoninarum ATCC 33209]
          Length = 107

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K   RS+LV  ++ +   S+      +  LF+    S   GE I I  +       + 
Sbjct: 1  MAK--NRSELVAEVAAKAETSQAAVNNVLDALFSTFESSVAAGEKITIPGWLAVERTDRA 58

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSIL 89
          +R GRN QT + ++I     V   A S L
Sbjct: 59 ARTGRNPQTGETIQIAAGHSVKLTAGSKL 87


>gi|53802893|ref|YP_115338.1| prophage MuMc02, DNA-binding protein HU [Methylococcus capsulatus
          str. Bath]
 gi|53756654|gb|AAU90945.1| prophage MuMc02, DNA-binding protein HU [Methylococcus capsulatus
          str. Bath]
          Length = 95

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 2/94 (2%)

Query: 5  ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + +S L+ +I ++    L++    R +  L N   ++   G+ + I   A   VK++ +R
Sbjct: 1  MNQSQLINAIHEDANGSLTKTVIQRVLIALANVAQEALANGDEVTIPGVAKLTVKERAAR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           GRN QT + V+I  +RV        LK+R+   
Sbjct: 61 TGRNPQTGETVEIPAKRVARASFVKALKERVQGG 94


>gi|209528275|ref|ZP_03276738.1| histone family protein DNA-binding protein [Arthrospira maxima
          CS-328]
 gi|209491295|gb|EDZ91687.1| histone family protein DNA-binding protein [Arthrospira maxima
          CS-328]
          Length = 71

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 34/68 (50%)

Query: 28 FVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASS 87
           ++     + D+    E + +  F +F  +++ +R GRN QT +++ I    V  F A  
Sbjct: 3  VLSAALESVIDAVATQEKVTLVGFGSFEARKRKAREGRNPQTGEKMDIPETWVPAFSAGK 62

Query: 88 ILKKRIMD 95
          + K+++ D
Sbjct: 63 LFKEKVAD 70


>gi|15827894|ref|NP_302157.1| histone-like protein [Mycobacterium leprae TN]
 gi|221230371|ref|YP_002503787.1| putative histone-like protein [Mycobacterium leprae Br4923]
 gi|6014920|sp|O33125|DBH_MYCLE RecName: Full=DNA-binding protein HU homolog; AltName: Full=21
          kDa laminin-2-binding protein; AltName:
          Full=Histone-like protein; Short=Hlp
 gi|2414560|emb|CAB16449.1| histone-like DNA binding protein [Mycobacterium leprae]
 gi|6009551|dbj|BAA84958.1| 21-kDa laminin-2-binding protein [Mycobacterium leprae]
 gi|13093447|emb|CAC30636.1| probable histone-like protein [Mycobacterium leprae]
 gi|219933478|emb|CAR71778.1| probable histone-like protein [Mycobacterium leprae Br4923]
          Length = 200

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVAGAQR 94


>gi|189218096|ref|YP_001938738.1| nucleoid DNA-binding protein [Methylacidiphilum infernorum V4]
 gi|189184954|gb|ACD82139.1| Bacterial nucleoid DNA-binding protein [Methylacidiphilum
          infernorum V4]
          Length = 109

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +TR DLV  +S + GL +++  +    + +   +   + E I++ +F  F V  + +R+G
Sbjct: 1  MTRRDLVVKVSTKTGLPQQEVAKIFEEILDVFMEVFKKKETIELRNFGVFEVTLRKARIG 60

Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIM 94
          RN +  ++ + I PR V+ FK    +K  + 
Sbjct: 61 RNPRNPEKDILIPPRAVIRFKPGKEVKGILN 91


>gi|218667767|ref|YP_002425678.1| DNA-binding protein HU family protein [Acidithiobacillus
          ferrooxidans ATCC 23270]
 gi|218519980|gb|ACK80566.1| DNA-binding protein HU family protein [Acidithiobacillus
          ferrooxidans ATCC 23270]
          Length = 91

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 1  MSKTITRSDLVKSISKEFGL--SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          MS+   + DL KS+    GL  + + +   V  L   I +    G  ++I  F TF    
Sbjct: 1  MSEISGKKDLAKSLVD-AGLAPTVRKAEDIVQHLVESIVELVSEGHKVRIHQFGTFQQIH 59

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88
          + +R+GRN QT  E++I  R+V+ FKAS  
Sbjct: 60 RAARMGRNPQTGGELEIPERKVLTFKASKS 89


>gi|1280561|gb|AAC73082.1| histone-like protein HBbu [Borrelia garinii]
          Length = 108

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           IT+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    +  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHIAYFRPGKDLKERVWG 105


>gi|330962165|gb|EGH62425.1| HU family DNA-binding protein [Pseudomonas syringae pv.
          maculicola str. ES4326]
          Length = 93

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 38/92 (41%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  L+  I++     +  +   +  L   + D    G  I +       V ++ +R 
Sbjct: 2  ALTKDQLIADIAEAIDAPKTTARNALEQLGQIVADQLENGAEITLPGIGKLKVAERPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN  T   ++I  ++V+ F  + +L   I  
Sbjct: 62 GRNPSTGAAIEIAAKKVIKFVPAKVLTDSINK 93


>gi|331271066|ref|YP_004385777.1| DNA-binding protein HU1 [Clostridium botulinum BKT015925]
 gi|329127458|gb|AEB77402.1| DNA-binding protein HU1 [Clostridium botulinum BKT015925]
          Length = 95

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++LV S++++  L++KD+   +      + ++   G+ I++  F TF  +++  R G
Sbjct: 1  MNKTELVNSMAEKAVLTKKDAELALKAFIESVKEALKEGKKIQLIGFGTFETREQKGRTG 60

Query: 65 -RNL--QTNQEVKIDPRRVVVFKASSILKKRIMD 95
            N   +  +      + V VFKA   LK+ + +
Sbjct: 61 TINFGSKKGETYTSKDKIVPVFKAGRQLKEIVDN 94


>gi|297516633|ref|ZP_06935019.1| transcriptional regulator HU subunit beta [Escherichia coli OP50]
          Length = 63

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 33/63 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L+  I+    +S+  + R +  +   + +S   G+ + +  F TF VK++ +R G
Sbjct: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60

Query: 65 RNL 67
          RN 
Sbjct: 61 RNP 63


>gi|62632021|gb|AAX89115.1| laminin-binding protein [Mycobacterium ulcerans]
          Length = 229

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|149913075|ref|ZP_01901609.1| hypothetical protein RAZWK3B_03765 [Roseobacter sp. AzwK-3b]
 gi|149813481|gb|EDM73307.1| hypothetical protein RAZWK3B_03765 [Roseobacter sp. AzwK-3b]
          Length = 95

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 45/95 (47%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +T++ LV +++ E G  +K +   +  +   I      G A+ +      + +++ 
Sbjct: 1  MAKPMTKTQLVAALADEMGTDKKTAGTALDAVTAIITREVSGGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R+ RN  T +++K +  +VV    +  LK  +  
Sbjct: 61 ERMVRNPATGEQIKKEADKVVKMTIAKALKDSVNG 95


>gi|62632025|gb|AAX89117.1| laminin-binding protein [Mycobacterium ulcerans]
          Length = 220

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|118617556|ref|YP_905888.1| DNA-binding protein HU HupB-like protein [Mycobacterium ulcerans
          Agy99]
 gi|62632019|gb|AAX89114.1| laminin-binding protein [Mycobacterium ulcerans]
 gi|118569666|gb|ABL04417.1| DNA-binding protein Hu HupB-like protein [Mycobacterium ulcerans
          Agy99]
          Length = 229

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|62632023|gb|AAX89116.1| laminin-binding protein [Mycobacterium ulcerans]
          Length = 229

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|289627960|ref|ZP_06460914.1| HU family DNA-binding protein [Pseudomonas syringae pv. aesculi
          str. NCPPB3681]
          Length = 93

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 38/92 (41%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  L+  I++     +  +   +  L   + D    G  I +       V ++ +R 
Sbjct: 2  ALTKDQLIADIAEAIDAPKTTARNALEQLGQIVADQLENGVEITLPGIGKLKVAERPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN  T   ++I  ++V+ F  + +L   I  
Sbjct: 62 GRNPSTGASIEIAAKKVIKFVPAKVLTDSINK 93


>gi|298373014|ref|ZP_06983004.1| DNA-binding protein HU-beta [Bacteroidetes oral taxon 274 str.
          F0058]
 gi|298275918|gb|EFI17469.1| DNA-binding protein HU-beta [Bacteroidetes oral taxon 274 str.
          F0058]
          Length = 91

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 51/91 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DLVK+I+ E GLS+ DS + +    N +  S V+GE++ +  F TF V ++ +R G
Sbjct: 1  MNKQDLVKAIATEAGLSQVDSKKALEAFENAVKKSLVKGESVTMIGFGTFSVVKRAARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N    + ++I  ++V  FK  S L + +  
Sbjct: 61 INPANGKPLQIKAKKVAKFKVGSKLAEAVAK 91


>gi|89145734|gb|ABD62056.1| Hbb [Borrelia genomosp. 1]
 gi|89145736|gb|ABD62057.1| Hbb [Borrelia genomosp. 1]
          Length = 108

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  IS         L +K     +   F ++  +      I+  SF TF V+++
Sbjct: 9   VTKSDIVDQISLHIRNNNLKLEKKYIRLVIDAFFEKLKSNLCSNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK+    V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKVLDHHVAYFRPGRDLKERVWG 105


>gi|259417894|ref|ZP_05741813.1| DNA-binding protein HU [Silicibacter sp. TrichCH4B]
 gi|259346800|gb|EEW58614.1| DNA-binding protein HU [Silicibacter sp. TrichCH4B]
          Length = 97

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 44/96 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSK +T++ LV ++++E    +K +   +  + N I      G A+ +      + +++ 
Sbjct: 1  MSKPMTKTQLVAALAEEMDSDKKTAGAALDAVCNLITREVSGGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R  RN  T ++   +  +VV    +  LK  +  D
Sbjct: 61 EREVRNPATGEKFMKEADKVVKMTIAKALKDSVNGD 96


>gi|256824922|ref|YP_003148882.1| nucleoid DNA-binding protein [Kytococcus sedentarius DSM 20547]
 gi|256688315|gb|ACV06117.1| bacterial nucleoid DNA-binding protein [Kytococcus sedentarius
          DSM 20547]
          Length = 106

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL + +    G  +  +++ V  L + +      G  + ++ F TF   ++  R G
Sbjct: 1  MNKADLARILEPIVG-GQGVASQCVDVLVDAMIREVAAGGTVTLTGFGTFERVERAPRTG 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN +T + V+I       F+ S + +  + D
Sbjct: 60 RNPRTGEVVRIPGTAGPRFRPSPMFRGFVAD 90


>gi|62632027|gb|AAX89118.1| laminin-binding protein [Mycobacterium ulcerans]
          Length = 220

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|183981741|ref|YP_001850032.1| DNA-binding protein HU, HupB [Mycobacterium marinum M]
 gi|62632029|gb|AAX89119.1| laminin-binding protein [Mycobacterium ulcerans]
 gi|183175067|gb|ACC40177.1| DNA-binding protein Hu, HupB [Mycobacterium marinum M]
          Length = 220

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|62632031|gb|AAX89120.1| laminin-binding protein [Mycobacterium ulcerans]
          Length = 211

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|62632033|gb|AAX89121.1| laminin-binding protein [Mycobacterium ulcerans]
          Length = 211

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++ G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|300743697|ref|ZP_07072717.1| DNA-binding protein HU [Rothia dentocariosa M567]
 gi|311112948|ref|YP_003984170.1| DNA-binding protein HU [Rothia dentocariosa ATCC 17931]
 gi|300380058|gb|EFJ76621.1| DNA-binding protein HU [Rothia dentocariosa M567]
 gi|310944442|gb|ADP40736.1| DNA-binding protein HU [Rothia dentocariosa ATCC 17931]
          Length = 106

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K   R++LV  ++++ G S+      +  +F     S  +GE I I  +       + 
Sbjct: 1  MAK--NRTELVAEVAEKSGKSQATVNAVLDAVFQAFETSVSKGEKITIPGWLAIERTDRA 58

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASS 87
          +R GRN QT + ++I     V   A S
Sbjct: 59 ARTGRNPQTGETIQIPAGHGVKLTAGS 85


>gi|261880407|ref|ZP_06006834.1| DNA-binding protein HU [Prevotella bergensis DSM 17361]
 gi|270332952|gb|EFA43738.1| DNA-binding protein HU [Prevotella bergensis DSM 17361]
          Length = 93

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEIC-DSAVRGEAIKISSFATFHVKQKGSRV 63
          +T++D++  I+++ GL +K+ +  +      +  +   + E + +  F +F VK++ ++ 
Sbjct: 1  MTKADIISEIAEQTGLQKKEVSVVIECFMETVKRNMLEKKENVYLRGFGSFIVKRRAAKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R++  N  + I       FK +    + +  +
Sbjct: 61 ARDIGKNTTITIPAHDFPSFKPAKAFVEEMKGE 93


>gi|28868477|ref|NP_791096.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|71735134|ref|YP_273418.1| HU family DNA-binding protein [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|213967075|ref|ZP_03395224.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
          T1]
 gi|237799866|ref|ZP_04588327.1| HU family DNA-binding protein [Pseudomonas syringae pv. oryzae
          str. 1_6]
 gi|257487397|ref|ZP_05641438.1| HU family DNA-binding protein [Pseudomonas syringae pv. tabaci
          ATCC 11528]
 gi|289651134|ref|ZP_06482477.1| HU family DNA-binding protein [Pseudomonas syringae pv. aesculi
          str. 2250]
 gi|298485811|ref|ZP_07003890.1| DNA-binding protein HU, form N [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|301386379|ref|ZP_07234797.1| HU family DNA-binding protein [Pseudomonas syringae pv. tomato
          Max13]
 gi|302063942|ref|ZP_07255483.1| HU family DNA-binding protein [Pseudomonas syringae pv. tomato
          K40]
 gi|302133049|ref|ZP_07259039.1| HU family DNA-binding protein [Pseudomonas syringae pv. tomato
          NCPPB 1108]
 gi|302188392|ref|ZP_07265065.1| HU family DNA-binding protein [Pseudomonas syringae pv. syringae
          642]
 gi|28851715|gb|AAO54791.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|71555687|gb|AAZ34898.1| DNA-binding protein HU family [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|213927917|gb|EEB61463.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
          T1]
 gi|298159837|gb|EFI00879.1| DNA-binding protein HU, form N [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|320322895|gb|EFW78986.1| HU family DNA-binding protein [Pseudomonas syringae pv. glycinea
          str. B076]
 gi|320329796|gb|EFW85784.1| HU family DNA-binding protein [Pseudomonas syringae pv. glycinea
          str. race 4]
 gi|330873104|gb|EGH07253.1| HU family DNA-binding protein [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
 gi|330887716|gb|EGH20377.1| HU family DNA-binding protein [Pseudomonas syringae pv. mori str.
          301020]
 gi|330899524|gb|EGH30943.1| HU family DNA-binding protein [Pseudomonas syringae pv. japonica
          str. M301072PT]
 gi|330950952|gb|EGH51212.1| HU family DNA-binding protein [Pseudomonas syringae Cit 7]
 gi|330975719|gb|EGH75785.1| HU family DNA-binding protein [Pseudomonas syringae pv. aptata
          str. DSM 50252]
 gi|331009010|gb|EGH89066.1| HU family DNA-binding protein [Pseudomonas syringae pv. tabaci
          ATCC 11528]
 gi|331015242|gb|EGH95298.1| HU family DNA-binding protein [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
 gi|331022721|gb|EGI02778.1| HU family DNA-binding protein [Pseudomonas syringae pv. oryzae
          str. 1_6]
          Length = 93

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 38/92 (41%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  L+  I++     +  +   +  L   + D    G  I +       V ++ +R 
Sbjct: 2  ALTKDQLIADIAEAIDAPKTTARNALEQLGQIVADQLENGVEITLPGIGKLKVAERPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN  T   ++I  ++V+ F  + +L   I  
Sbjct: 62 GRNPSTGAAIEIAAKKVIKFVPAKVLTDSINK 93


>gi|118471339|ref|YP_886729.1| DNA-binding protein HU [Mycobacterium smegmatis str. MC2 155]
 gi|14194641|sp|Q9ZHC5|DBH_MYCS2 RecName: Full=DNA-binding protein HU homolog; AltName:
          Full=Histone-like protein; Short=Hlp
 gi|3930569|gb|AAD13809.1| histone-like protein [Mycobacterium smegmatis str. MC2 155]
 gi|67515139|gb|AAY68087.1| histone-like protein [Mycobacterium smegmatis str. MC2 155]
 gi|118172626|gb|ABK73522.1| DNA-binding protein HU [Mycobacterium smegmatis str. MC2 155]
          Length = 208

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 50/94 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++ + G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTTKMGTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  I    +
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVISGAQK 94


>gi|258651712|ref|YP_003200868.1| histone family protein DNA-binding protein [Nakamurella
           multipartita DSM 44233]
 gi|258554937|gb|ACV77879.1| histone family protein DNA-binding protein [Nakamurella
           multipartita DSM 44233]
          Length = 222

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 45/101 (44%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++DL+  +++     +K +   V  + + I     +G ++ IS F  F  + + +R  
Sbjct: 1   MNKTDLINQLAERLDGDKKKAQVAVEGVIDLIQREVQKGRSVSISGFGVFEKRARAARTA 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           RN +T + VK+    V  F+     K  I   ++  K +  
Sbjct: 61  RNPRTGEAVKVRKTNVPAFRPGKYFKDVIAGTVKLPKPSNT 101


>gi|226330391|ref|ZP_03805909.1| hypothetical protein PROPEN_04309 [Proteus penneri ATCC 35198]
 gi|225201186|gb|EEG83540.1| hypothetical protein PROPEN_04309 [Proteus penneri ATCC 35198]
          Length = 87

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 40/65 (61%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T++++ +++ ++ G+S++D+   V + F E+  S   GE +K+S F  F ++ K  R 
Sbjct: 2  ALTKAEMAENLFEKLGVSKRDAKDLVESFFEEVRRSLENGEQVKLSGFGNFDLRDKNQRP 61

Query: 64 GRNLQ 68
          GRN +
Sbjct: 62 GRNPK 66


>gi|254476572|ref|ZP_05089958.1| DNA-binding protein HU [Ruegeria sp. R11]
 gi|214030815|gb|EEB71650.1| DNA-binding protein HU [Ruegeria sp. R11]
          Length = 95

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 43/95 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSK +T++ LV ++++E G  +K +   +  +   I      G A+ +      + +++ 
Sbjct: 1  MSKPMTKTQLVAALAEEMGSDKKAAGAALDAVCALITREVSGGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R  RN  T ++   +  +VV    +  LK  +  
Sbjct: 61 EREVRNPATGEKFTKEADKVVKMTIAKALKDSVNG 95


>gi|260431902|ref|ZP_05785873.1| DNA-binding protein HU [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415730|gb|EEX08989.1| DNA-binding protein HU [Silicibacter lacuscaerulensis ITI-1157]
          Length = 95

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 43/94 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +T++ LV ++++E G  +K +   +  + N I      G A+ +      + +++ 
Sbjct: 1  MAKPMTKTQLVAALAEEMGTDKKSANAALEAITNLITREVSAGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           R  RN  T +    +  +VV    +  LK  + 
Sbjct: 61 ERQVRNPATGETFTKEADKVVKMTIAKALKDSVN 94


>gi|296171286|ref|ZP_06852690.1| histone family protein [Mycobacterium parascrofulaceum ATCC
          BAA-614]
 gi|295894254|gb|EFG74011.1| histone family protein [Mycobacterium parascrofulaceum ATCC
          BAA-614]
          Length = 211

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 50/94 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++++    R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDVLTQKLNTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    R
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94


>gi|253582110|ref|ZP_04859334.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251836459|gb|EES64996.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 111

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+ + V+    + G+ ++ ++ +      + + +  V+GE +    F  F   ++ +R 
Sbjct: 6  MTKKEFVELFGTKAGIKTKVEADKLTKAFIDTLEEILVKGENVSFIGFGKFEAAERAART 65

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            N QT + +K++ ++V  F+A   L +++ 
Sbjct: 66 CVNPQTKKPMKVEAKKVAKFRAGKNLLEKMN 96


>gi|297194088|ref|ZP_06911486.1| DNA-binding protein HU 1 [Streptomyces pristinaespiralis ATCC
          25486]
 gi|197720925|gb|EDY64833.1| DNA-binding protein HU 1 [Streptomyces pristinaespiralis ATCC
          25486]
          Length = 93

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV +++    ++RKD+   +  L   + +   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAALAETVGEVVAKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           RN QT   ++I     V   A S LK+ 
Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKEA 89


>gi|255009412|ref|ZP_05281538.1| putative histone-like DNA-binding protein HU2 [Bacteroides
          fragilis 3_1_12]
 gi|313147171|ref|ZP_07809364.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
 gi|313135938|gb|EFR53298.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
          Length = 96

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 46/92 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   +    +S+  G + KD++  +TTL ++I      G AI I  F  F VK+K  R+ 
Sbjct: 1  MNNKEFTSELSRRLGYNTKDTSDLITTLLSDIIQELQEGNAIGIQGFGAFEVKKKAERIV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N  T   + + P+ V+ FK S ILK +  + 
Sbjct: 61 INPVTRLRLLVPPKLVLAFKPSPILKDKFKEA 92


>gi|325168608|ref|YP_004280398.1| DNA binding protein [Agrobacterium sp. H13-3]
 gi|325064331|gb|ADY68020.1| DNA binding protein [Agrobacterium sp. H13-3]
          Length = 92

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 41/90 (45%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++V+ I+ E  L++  +   V T+F  I  +A  G    I  F  F +K    R  R
Sbjct: 3  TTNEIVEKIASEQNLTKAQAKSIVETVFASITTAATSGAETSIPGFGKFKIKDTPEREAR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N  T   +K+   + + F+ +  LK  +  
Sbjct: 63 NPATGATIKVAAAKKLTFQPAKALKDVLNK 92


>gi|154493959|ref|ZP_02033279.1| hypothetical protein PARMER_03303 [Parabacteroides merdae ATCC
          43184]
 gi|154086219|gb|EDN85264.1| hypothetical protein PARMER_03303 [Parabacteroides merdae ATCC
          43184]
          Length = 91

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 48/91 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + RS L+  ++++ GL++KD  R +  +   I      G+ I +  F +F  + + SR  
Sbjct: 1  MNRSQLINILAQKTGLNKKDVKRTIDEMQKLIVQEVKEGQRICLHGFGSFKPRFQSSRPA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RNL+    V++ PR ++ FK +  L +++  
Sbjct: 61 RNLKNGTAVQLSPRTIIHFKCAPHLLEQMNK 91


>gi|108798891|ref|YP_639088.1| nucleoid protein Hbs [Mycobacterium sp. MCS]
 gi|119868006|ref|YP_937958.1| nucleoid protein Hbs [Mycobacterium sp. KMS]
 gi|126434491|ref|YP_001070182.1| nucleoid protein Hbs [Mycobacterium sp. JLS]
 gi|108769310|gb|ABG08032.1| bacterial nucleoid protein Hbs [Mycobacterium sp. MCS]
 gi|119694095|gb|ABL91168.1| bacterial nucleoid protein Hbs [Mycobacterium sp. KMS]
 gi|126234291|gb|ABN97691.1| bacterial nucleoid protein Hbs [Mycobacterium sp. JLS]
          Length = 225

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 51/94 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +++ + G  R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIDALTTKMGTDRRQATEAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+ P  V  F+  +  K  +    +
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAIVSGAQK 94


>gi|3913403|sp|Q45352|DBH_BORPR RecName: Full=DNA-binding protein HBbu
 gi|1280569|gb|AAC73077.1| histone-like protein HBbu [Borrelia parkeri]
          Length = 108

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +T+SD+V  IS         L +K     V   F E+ +S      I+  SF TF ++++
Sbjct: 9   VTKSDIVNQISLNIKNSNEKLEKKYIRLVVDAFFEELKNSLCLNNVIEFRSFGTFELRKR 68

Query: 60  GSRV-GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + V +D   V  F+    LK  +  
Sbjct: 69  KGRQNARNPQTGEYVNVDDHHVAYFRPGKDLKDGVWG 105


>gi|317504625|ref|ZP_07962592.1| DNA-binding protein HU-beta [Prevotella salivae DSM 15606]
 gi|315664246|gb|EFV03946.1| DNA-binding protein HU-beta [Prevotella salivae DSM 15606]
          Length = 91

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 36/63 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  I+   GLS+ ++ + +      I ++ V+G+ I++  F TF V ++ +R G
Sbjct: 1  MNKTELIDKIAAGAGLSKAEAKKALDATTAAIKEALVKGDKIQLVGFGTFSVNERPAREG 60

Query: 65 RNL 67
           N 
Sbjct: 61 INP 63


>gi|298489534|ref|ZP_07007542.1| DNA-binding protein HU, form N [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|298155938|gb|EFH97050.1| DNA-binding protein HU, form N [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
          Length = 97

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 40/93 (43%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  LV  I++     +  + + +  L   + D    G  I +       V ++ +R 
Sbjct: 2  ALTKDQLVAGIAEAIDAPKTTARKALEQLGQIVADQLESGAEITLPGIGKLKVAERPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN  T   ++I  ++VV F ++ +L   I   
Sbjct: 62 GRNPSTGAAIEIAAKKVVKFVSAKVLNDAINKG 94


>gi|304321185|ref|YP_003854828.1| DNA-binding protein HU [Parvularcula bermudensis HTCC2503]
 gi|303300087|gb|ADM09686.1| DNA-binding protein HU [Parvularcula bermudensis HTCC2503]
          Length = 95

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV---RGEAIKISSFATFHVKQKGS 61
          +++++ + +++    +S  ++ R V  +F EI        +     I +F TF + ++ +
Sbjct: 1  MSKAEFISNVAAAGDMSNAEAKRMVELVFGEIEAGLKRAKKDGKYTIGTFGTFTITKRPA 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          R GRN +T +E+KI   + + F+ SS LK  
Sbjct: 61 RKGRNPRTGEEIKIKASKSLRFRPSSNLKAA 91


>gi|296273437|ref|YP_003656068.1| histone family protein DNA-binding protein [Arcobacter
          nitrofigilis DSM 7299]
 gi|296097611|gb|ADG93561.1| histone family protein DNA-binding protein [Arcobacter
          nitrofigilis DSM 7299]
          Length = 91

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++ + +++ + GLS+KD+   V ++   I ++ V+ E++    F TF    + +R  
Sbjct: 1  MNKAEFIDAVATKAGLSKKDAKCAVDSVLETITETLVKNESVSFIGFGTFSTAARAARTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +   T++ V +    V  FK    LK+ +  
Sbjct: 61 KVPGTDRTVDVKATTVAKFKVGKALKEAVAK 91


>gi|126734354|ref|ZP_01750101.1| DNA-binding protein HU [Roseobacter sp. CCS2]
 gi|126717220|gb|EBA14084.1| DNA-binding protein HU [Roseobacter sp. CCS2]
          Length = 91

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 44/91 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++ LV ++++E G+ +K +   +  +   I      G A+ +      + +++  R+ 
Sbjct: 1  MTKAQLVTALAEETGMDKKAAGSALDAVTGIITKEVSGGGAVTLPGVGKIYCRERPERMV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T +++K D  +VV    +  LK  +  
Sbjct: 61 RNPATGEQIKKDADKVVKMTIAKALKDSVNG 91


>gi|330969241|gb|EGH69307.1| HU family DNA-binding protein [Pseudomonas syringae pv. aceris
          str. M302273PT]
          Length = 93

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 38/92 (41%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  L+  I++     +  +   +  L   + D    G  I +       V ++ +R 
Sbjct: 2  ALTKDQLIADIAESIEAPKTTARNALEQLGQIVADQLENGVEITLPGIGKLKVAERPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN  T   ++I  ++V+ F  + +L   I  
Sbjct: 62 GRNPSTGAAIEIAAKKVIKFVPAKVLTDSINK 93


>gi|126730363|ref|ZP_01746174.1| histone-like DNA-binding protein [Sagittula stellata E-37]
 gi|126709096|gb|EBA08151.1| histone-like DNA-binding protein [Sagittula stellata E-37]
          Length = 108

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 44/94 (46%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           M+K +T++ LV +++++    +K +   + +L   I      G A+ +      + +++ 
Sbjct: 14  MAKPMTKTQLVAALAEKMDADKKTANAALDSLVEIITSEVADGGAVTLPGVGKIYCRERP 73

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            R+ RN  T ++ K +  + V    +  LK  + 
Sbjct: 74  ERMVRNPATGEQFKKEADKQVKMTIAKALKDSVN 107


>gi|254389768|ref|ZP_05004992.1| DNA-binding protein HU [Streptomyces clavuligerus ATCC 27064]
 gi|294812896|ref|ZP_06771539.1| DNA-binding protein HU 1 [Streptomyces clavuligerus ATCC 27064]
 gi|326441327|ref|ZP_08216061.1| DNA-binding protein HU 1 [Streptomyces clavuligerus ATCC 27064]
 gi|197703479|gb|EDY49291.1| DNA-binding protein HU [Streptomyces clavuligerus ATCC 27064]
 gi|294325495|gb|EFG07138.1| DNA-binding protein HU 1 [Streptomyces clavuligerus ATCC 27064]
          Length = 93

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV +++    ++RKD+   +  L   + +   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAALAETVGEIVAKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           RN QT   ++I     V   A S LK+ 
Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKEA 89


>gi|254884846|ref|ZP_05257556.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA]
 gi|254837639|gb|EET17948.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA]
          Length = 94

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 42/91 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++L K I+ + G   +  +  V +L   I  S  + E + +  F +F +K++  +  
Sbjct: 1  MTKAELCKKITDQTGCDMQTVSAIVESLMVSIKGSLEKEENVYLRGFGSFIIKRRAEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN+  N  + I    +  FK++      +  
Sbjct: 61 RNISKNTTIIIPAHNIPAFKSAKEFTDLVSK 91


>gi|330995080|ref|ZP_08318997.1| putative DNA-binding protein HU [Paraprevotella xylaniphila YIT
          11841]
 gi|332879536|ref|ZP_08447231.1| putative DNA-binding protein HU [Capnocytophaga sp. oral taxon
          329 str. F0087]
 gi|329576656|gb|EGG58159.1| putative DNA-binding protein HU [Paraprevotella xylaniphila YIT
          11841]
 gi|332682502|gb|EGJ55404.1| putative DNA-binding protein HU [Capnocytophaga sp. oral taxon
          329 str. F0087]
          Length = 92

 Score = 91.1 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63
          +T++++V  ISK+ G+ +      V      + +S   + + + +  F +F +K++  + 
Sbjct: 1  MTKAEIVNEISKKTGIDKATVLTAVEAFMESVKESLIQKEDNVYLRGFGSFILKKRAKKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN+  N  + ID   +  FK + +    I  
Sbjct: 61 ARNISKNTTIIIDEHNIPAFKPAKVFVDAIKK 92


>gi|49188573|ref|YP_025670.1| single-stranded binding protein [Pseudomonas syringae pv.
          maculicola]
 gi|47525156|gb|AAT35169.1| single-stranded binding protein [Pseudomonas syringae pv.
          maculicola]
          Length = 97

 Score = 91.1 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 38/93 (40%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  LV  I++     +  +   +  L   + D    G  I +       V ++ +R 
Sbjct: 2  ALTKDQLVAGIAEAIDAPKTTARNALEQLGQIVADQLESGAEITLPGIGKLKVAERPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN  T   + I  ++VV F ++ +L   I   
Sbjct: 62 GRNPSTGASIDIAAKKVVKFVSAKVLNDAINKG 94


>gi|288926972|ref|ZP_06420868.1| DNA-binding protein HU [Prevotella buccae D17]
 gi|315608920|ref|ZP_07883892.1| DNA-binding protein HU [Prevotella buccae ATCC 33574]
 gi|288336255|gb|EFC74640.1| DNA-binding protein HU [Prevotella buccae D17]
 gi|315249300|gb|EFU29317.1| DNA-binding protein HU [Prevotella buccae ATCC 33574]
          Length = 97

 Score = 91.1 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 48/92 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + +  +++  G +++ + + V  +  E+ D     E + I+ F +F VK++  R+ 
Sbjct: 1  MNNKEYINELARRSGYTQEVTRKLVHDVVAEMTDRLGESETVSIAGFGSFEVKKRLERIL 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N  T Q + + P+ V+ F+  + +K+++ + 
Sbjct: 61 VNPSTKQRMLVPPKLVLSFRPVASVKEKLKNG 92


>gi|126739059|ref|ZP_01754753.1| DNA-binding protein HU [Roseobacter sp. SK209-2-6]
 gi|126719676|gb|EBA16384.1| DNA-binding protein HU [Roseobacter sp. SK209-2-6]
          Length = 94

 Score = 91.1 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 1/94 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M K +  S L+++I++E   S++     ++ L  +I  +A  G    I     F   ++ 
Sbjct: 1  MGK-LNYSGLIRAIAEETSQSQEAVKAVLSALTEQIIKAAEGGSDTTIPGLGVFKRSERA 59

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +R GRN  T  E++I     + FK +   K R+ 
Sbjct: 60 ARKGRNPSTGVEIEIAASSSLSFKPAKAAKDRLN 93


>gi|110677982|ref|YP_680989.1| DNA-binding protein HU [Roseobacter denitrificans OCh 114]
 gi|163732504|ref|ZP_02139949.1| DNA-binding protein HU [Roseobacter litoralis Och 149]
 gi|109454098|gb|ABG30303.1| DNA-binding protein HU [Roseobacter denitrificans OCh 114]
 gi|161393864|gb|EDQ18188.1| DNA-binding protein HU [Roseobacter litoralis Och 149]
          Length = 95

 Score = 91.1 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 45/95 (47%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +T++ LV ++++E    +K +   +  + N I      G A+ +      + +++ 
Sbjct: 1  MAKPMTKTQLVAALAEEMDTDKKSAGAALDAVCNLITKEVSGGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R+ RN  T ++ K D  +VV    +  LK  +  
Sbjct: 61 ERMVRNPATGEQFKKDADKVVKMTIAKALKDSVNG 95


>gi|256838928|ref|ZP_05544438.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
 gi|256739847|gb|EEU53171.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
          Length = 95

 Score = 91.1 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 44/92 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +LVK+++ +  +++ ++ RFV        ++     ++ +  F T    ++  R+G
Sbjct: 1  MNRRELVKTLADKLSVTQVEAMRFVQAWEETTTEALESDGSLMLLGFGTLSAWKQTERIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          RN +      I  R+ V FK   +L KR+   
Sbjct: 61 RNPRNGVAYIIRARKSVKFKPGKLLLKRLNAS 92


>gi|99082641|ref|YP_614795.1| histone-like DNA-binding protein [Ruegeria sp. TM1040]
 gi|99038921|gb|ABF65533.1| histone-like DNA-binding protein [Ruegeria sp. TM1040]
          Length = 97

 Score = 91.1 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 44/96 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSK +T++ LV ++++E    +K +   +  + N I      G A+ +      + +++ 
Sbjct: 1  MSKPMTKTQLVAALAEEMDSDKKTAGAALDAVCNLITREVSGGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R  RN  T ++   +  +VV    +  LK  +  +
Sbjct: 61 EREVRNPATGEKFMKEADKVVKMTIAKALKDSVNGE 96


>gi|77457211|ref|YP_346716.1| histone-like DNA-binding protein [Pseudomonas fluorescens Pf0-1]
 gi|77381214|gb|ABA72727.1| putative DNA-binding protein [Pseudomonas fluorescens Pf0-1]
          Length = 93

 Score = 91.1 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 36/92 (39%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  L+  I++     +  +   +  L   + D    G  I +       V ++ +R 
Sbjct: 2  ALTKDQLIADIAEAIDAPKTTARNALDQLGQIVADQLENGGEITLPGIGKLKVTERPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN  T   ++I  ++V+    +  L   +  
Sbjct: 62 GRNPSTGAAIEIPAKKVIKLVVAKGLTDAVNK 93


>gi|19704153|ref|NP_603715.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum
          ATCC 25586]
 gi|254303834|ref|ZP_04971192.1| DNA-binding protein HU [Fusobacterium nucleatum subsp.
          polymorphum ATCC 10953]
 gi|296328641|ref|ZP_06871158.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum
          ATCC 23726]
 gi|19714367|gb|AAL95014.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum
          ATCC 25586]
 gi|148324026|gb|EDK89276.1| DNA-binding protein HU [Fusobacterium nucleatum subsp.
          polymorphum ATCC 10953]
 gi|296154240|gb|EFG95041.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum
          ATCC 23726]
          Length = 91

 Score = 91.1 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+ +  K + ++    +R ++ + V  +F+ I    + GE + I ++    + ++  R+
Sbjct: 1  MTKKEFAKLLFEKGVFTTRTEAEKKVDIIFDSIEKILLDGENLSIINWGKLEIVERAPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +EVKI  R+ V F+      +++ 
Sbjct: 61 GRNPKTGEEVKIGKRKSVKFRPGKAFLEKLN 91


>gi|119477609|ref|ZP_01617759.1| integration host factor, beta subunit [marine gamma
          proteobacterium HTCC2143]
 gi|119449112|gb|EAW30352.1| integration host factor, beta subunit [marine gamma
          proteobacterium HTCC2143]
          Length = 68

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 33/59 (55%)

Query: 40 AVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
             GE I+I  F +F +  +  R GRN +T + V+++ + V  FK    +++R+ + ++
Sbjct: 7  LASGERIEIRGFGSFSLHYREPRQGRNPKTGEAVELNGKYVPHFKPGKEMRERVNESLQ 65


>gi|296113089|ref|YP_003627027.1| integration host factor subunit beta [Moraxella catarrhalis RH4]
 gi|295920783|gb|ADG61134.1| integration host factor subunit beta [Moraxella catarrhalis RH4]
 gi|326560082|gb|EGE10472.1| integration host factor subunit beta [Moraxella catarrhalis
          46P47B1]
 gi|326560465|gb|EGE10847.1| integration host factor subunit beta [Moraxella catarrhalis 7169]
 gi|326561668|gb|EGE12005.1| integration host factor subunit beta [Moraxella catarrhalis
          103P14B1]
 gi|326564204|gb|EGE14440.1| integration host factor subunit beta [Moraxella catarrhalis
          12P80B1]
 gi|326565803|gb|EGE15965.1| integration host factor subunit beta [Moraxella catarrhalis BC1]
 gi|326570456|gb|EGE20496.1| integration host factor subunit beta [Moraxella catarrhalis BC8]
 gi|326571139|gb|EGE21163.1| integration host factor subunit beta [Moraxella catarrhalis BC7]
 gi|326573433|gb|EGE23401.1| integration host factor subunit beta [Moraxella catarrhalis
          101P30B1]
 gi|326575671|gb|EGE25594.1| integration host factor subunit beta [Moraxella catarrhalis CO72]
 gi|326577137|gb|EGE27031.1| integration host factor subunit beta [Moraxella catarrhalis O35E]
          Length = 99

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 1  MSKTITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          M   I +S+L+ +++     L        V  +   + +  V    I++  F +F +  +
Sbjct: 1  MQAVINKSNLIANLASVCEELEEDVVDEAVRLMIAMMVNELVYDGRIEVRGFGSFCLHHR 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           +R+ RN +T + V +  +    FK    L++ + 
Sbjct: 61 SARIARNPRTGESVSVKAKATPYFKPGKALRESVN 95


>gi|99034453|ref|ZP_01314451.1| hypothetical protein Wendoof_01000745 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 101

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 50/86 (58%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           +   I++E GLS++D    +  + +EI  S V+   +KISSF TF VK+K  R G    T
Sbjct: 16  IAGDINQEIGLSKEDYVSIIDDILDEIKTSLVKDGIVKISSFGTFLVKKKKERPGNIPNT 75

Query: 70  NQEVKIDPRRVVVFKASSILKKRIMD 95
           +++V I  R  V F+ S I+KK I +
Sbjct: 76  SEKVMIQARNSVSFRPSKIIKKSINN 101


>gi|168187176|ref|ZP_02621811.1| DNA-binding protein HU 1 [Clostridium botulinum C str. Eklund]
 gi|169294964|gb|EDS77097.1| DNA-binding protein HU 1 [Clostridium botulinum C str. Eklund]
          Length = 95

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ S++++  L++KD+   +      + ++   G+ +++  F TF  +++  R G
Sbjct: 1  MNKTELLNSMAEKAVLTKKDAELALKAFIESVKEALKEGKKVQLIGFGTFETREQKGRTG 60

Query: 65 -RNL--QTNQEVKIDPRRVVVFKASSILKKRIMD 95
            N   +  +      + V VFKA   LK+ + +
Sbjct: 61 TINFGSKKGETYTSKDKIVPVFKAGRQLKEIVDN 94


>gi|46201151|ref|ZP_00055681.2| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magnetotacticum MS-1]
          Length = 87

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 41/87 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          ++++ + K+I    G +   +   V  +   I D         +  F TF   ++ +R G
Sbjct: 1  MSKTAISKAIRTATGCTVAQADEAVDAVIATILDGVKTEGRFGLIGFGTFSKSERPARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN +T + ++I     + FKASS LKK
Sbjct: 61 RNPRTGKTIEIKASSTIKFKASSALKK 87


>gi|257469123|ref|ZP_05633217.1| hypothetical protein FulcA4_07245 [Fusobacterium ulcerans ATCC
          49185]
 gi|317063369|ref|ZP_07927854.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
 gi|313689045|gb|EFS25880.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
          Length = 106

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+ + V+    + G+ ++ ++ +      + + +  V+GE +    F  F   ++ +R 
Sbjct: 1  MTKKEFVELFGTKAGIKTKVEADKLTKAFIDTLEEILVKGENVSFIGFGKFEAAERAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            N QT + +K++ ++V  F+A   L +++ 
Sbjct: 61 CVNPQTKKPMKVEAKKVAKFRAGKNLLEKMN 91


>gi|119962186|ref|YP_949429.1| DNA-binding protein HU [Arthrobacter aurescens TC1]
 gi|119949045|gb|ABM07956.1| DNA-binding protein HU [Arthrobacter aurescens TC1]
          Length = 95

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K   RS+LV  ++ + G S+      +  LF     S   GE I I  +       + 
Sbjct: 1  MAK--NRSELVAEVAGKAGTSQAAVNSVLDALFEVFETSVAAGEKITIPGWLAVERTDRA 58

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASS 87
          +R GRN QT + ++I     V   A S
Sbjct: 59 ARTGRNPQTGETIQIAAGHSVKLTAGS 85


>gi|302534743|ref|ZP_07287085.1| integration host factor, beta subunit [Streptomyces sp. C]
 gi|302443638|gb|EFL15454.1| integration host factor, beta subunit [Streptomyces sp. C]
          Length = 93

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV ++S+   ++RKD+   +  L   + +   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALSERAEVTRKDADAVLAALAETVGEIVAKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           RN QT   ++I     V   A S LK+ 
Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKEA 89


>gi|218260115|ref|ZP_03475545.1| hypothetical protein PRABACTJOHN_01206 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224732|gb|EEC97382.1| hypothetical protein PRABACTJOHN_01206 [Parabacteroides johnsonii
           DSM 18315]
          Length = 101

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 3/101 (2%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +  LV+ IS    +        + TL + I DS +  E + I +F +F +  + SR  
Sbjct: 1   MNKHSLVEIISDRLNMPHDLVCSVINTLADVIADSLLEEERVVIQNFGSFRLWHQASRPV 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIM---DDMRGRKC 102
           RN +T + +   PR  V F     L   +    DDM   K 
Sbjct: 61  RNPKTGEPMIFQPRNSVKFVPGKHLVDLLNRQADDMESDKA 101


>gi|94984283|ref|YP_603647.1| histone-like protein DNA-binding protein [Deinococcus geothermalis
           DSM 11300]
 gi|94554564|gb|ABF44478.1| histone-like protein DNA-binding protein [Deinococcus geothermalis
           DSM 11300]
          Length = 116

 Score = 90.7 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 43/84 (51%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
           ++ +V  I++   LSRK ++  V T+ + I  +   G+ + +    T  V +  +R G  
Sbjct: 30  KTQIVDQIAERTSLSRKQASEAVATILDTIAQALREGKTVGLPGLGTLSVTETAARTGVR 89

Query: 67  LQTNQEVKIDPRRVVVFKASSILK 90
             T++ ++I   + + FK ++ LK
Sbjct: 90  PGTSERIQIPAGKKIRFKVATTLK 113


>gi|254463816|ref|ZP_05077227.1| DNA-binding protein HU [Rhodobacterales bacterium Y4I]
 gi|206684724|gb|EDZ45206.1| DNA-binding protein HU [Rhodobacterales bacterium Y4I]
          Length = 95

 Score = 90.7 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 44/95 (46%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSK +T++ LV ++++E G  +K +   +  + + I      G A+ +      + +++ 
Sbjct: 1  MSKPMTKTQLVAALAEEMGSDKKTAGSALEAVCSLITREVSGGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R  RN  T ++   +  +VV    +  LK  +  
Sbjct: 61 EREVRNPATGEKFTKEADKVVKMTIAKALKDSVNG 95


>gi|289628684|ref|ZP_06461638.1| single-stranded binding protein [Pseudomonas syringae pv. aesculi
          str. NCPPB3681]
          Length = 95

 Score = 90.7 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 38/94 (40%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  LV  I++     +  +   +  L   + D    G  I +       V ++ +R 
Sbjct: 2  ALTKDQLVAGIAEAIDAPKTTARNALEQLGQIVADQLESGAEITLPGIGKLKVAERPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN  T   ++I  ++ + F  + +L   I   +
Sbjct: 62 GRNPSTGASIEIAAKKAIKFVPAKVLNDSINKGL 95


>gi|241518439|ref|YP_002979067.1| histone family protein DNA-binding protein [Rhizobium
          leguminosarum bv. trifolii WSM1325]
 gi|240862852|gb|ACS60516.1| histone family protein DNA-binding protein [Rhizobium
          leguminosarum bv. trifolii WSM1325]
          Length = 92

 Score = 90.7 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+ +  L++      V  +   I  +A+ G    +  F  F VK    R  R
Sbjct: 3  TTNEIADKIAGDHSLTKAQGKAIVEAVIASITQAAMDGNETSLPGFGKFKVKATPEREAR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N  T   +K+   + + F  +  LK  +  
Sbjct: 63 NPATGATIKVAAAKKLAFTPAKALKDALNK 92


>gi|328882764|emb|CCA56003.1| Non-specific DNA-binding protein HBsu [Streptomyces venezuelae
          ATCC 10712]
          Length = 93

 Score = 90.7 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV +++    ++RKD+   +  L   + +   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAALAETVGEVVAKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           RN QT   + I     V   A S LK+ 
Sbjct: 61 ARNPQTGDPIDIPAGYSVKVSAGSKLKEA 89


>gi|269121288|ref|YP_003309465.1| histone family protein DNA-binding protein [Sebaldella termitidis
          ATCC 33386]
 gi|268615166|gb|ACZ09534.1| histone family protein DNA-binding protein [Sebaldella termitidis
          ATCC 33386]
          Length = 92

 Score = 90.7 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 41/73 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++ + +++ +K  G ++K S   V      +  S  +GE ++   + TF V+++ +R G
Sbjct: 1  MSKKEFIEAYAKATGETKKRSEELVNEFLGTVEKSLTKGETVQFVGWGTFGVQKRAARKG 60

Query: 65 RNLQTNQEVKIDP 77
          RN QT +E+KI  
Sbjct: 61 RNPQTGKEIKIAA 73


>gi|86136850|ref|ZP_01055428.1| DNA-binding protein HU [Roseobacter sp. MED193]
 gi|85826174|gb|EAQ46371.1| DNA-binding protein HU [Roseobacter sp. MED193]
          Length = 97

 Score = 90.7 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 43/96 (44%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSK +T++ LV +++ E G  +K +   +  +   I      G A+ +      + +++ 
Sbjct: 1  MSKPMTKTQLVAALADEMGEDKKTAGAALEAVCALITSEVSAGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R  RN  T ++   +  +VV    +  LK  +  +
Sbjct: 61 EREVRNPATGEKFMKEADKVVKMTIAKALKDSVNGE 96


>gi|303235684|ref|ZP_07322291.1| DNA-binding protein HU [Prevotella disiens FB035-09AN]
 gi|302484131|gb|EFL47119.1| DNA-binding protein HU [Prevotella disiens FB035-09AN]
          Length = 95

 Score = 90.7 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 48/92 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + + +++ + G ++ ++ + V T    + D+   GE   +S F  F VK++  R+ 
Sbjct: 1  MNNKEFIAALANKTGRTQDETEKLVKTALQAMGDNFESGEPFLVSGFGAFEVKKRMERIM 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N  T Q + + P+ V+ F+A+  +K+++   
Sbjct: 61 VNPGTGQRMLVPPKLVLGFRATQSVKEKLKKG 92


>gi|325297733|ref|YP_004257650.1| histone family protein DNA-binding protein [Bacteroides
           salanitronis DSM 18170]
 gi|324317286|gb|ADY35177.1| histone family protein DNA-binding protein [Bacteroides
           salanitronis DSM 18170]
          Length = 97

 Score = 90.7 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 48/97 (49%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +   +L   +++  G   +D+ + V ++   + +    G+ + ++ F TF VK++  R+ 
Sbjct: 1   MNNKELTNELARRLGYENQDAAQLVNSMVTMMSEQLQEGKTLVLADFGTFEVKKELERIE 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
            N  T Q   + P+ V+ FK ++  K+++ +     +
Sbjct: 61  VNPLTKQRFLVPPKLVLTFKPAAAFKEKLKNTRAIHE 97


>gi|190014828|ref|YP_001967592.1| orf_Bo196 [Agrobacterium tumefaciens]
 gi|71849631|gb|AAZ50579.1| orf_Bo196 [Agrobacterium tumefaciens]
          Length = 92

 Score = 90.4 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 40/90 (44%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++ + I+ E  L++  +   V T+F  I  +A  G    I  F  F +K    R  R
Sbjct: 3  TTNEIAEKIASEQNLTKAQAKSIVETVFASITTAATSGAETSIPGFGKFKIKDTPEREAR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N  T   +K+   + + F+ +  LK  +  
Sbjct: 63 NPATGATIKVAAAKKLTFQPAKALKDVLNK 92


>gi|226357673|ref|YP_002787412.1| DNA-binding protein HU (Histone-like protein) [Deinococcus deserti
           VCD115]
 gi|226319915|gb|ACO47908.1| putative DNA-binding protein HU (Histone-like protein) [Deinococcus
           deserti VCD115]
          Length = 121

 Score = 90.4 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 46/84 (54%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
           ++ +V  I+   GL++K S   V+ +   I ++   G+++ +    T  V++  +R G  
Sbjct: 35  KTQMVDMIADRAGLTKKQSEEVVSVMLESIVEAVRSGKSVGLPGLGTLSVRETAARTGVR 94

Query: 67  LQTNQEVKIDPRRVVVFKASSILK 90
             T+++++I   + + FKA++ LK
Sbjct: 95  PGTSEKIQIAAGKKLAFKAATTLK 118


>gi|254446217|ref|ZP_05059693.1| DNA-binding protein HU [Verrucomicrobiae bacterium DG1235]
 gi|198260525|gb|EDY84833.1| DNA-binding protein HU [Verrucomicrobiae bacterium DG1235]
          Length = 104

 Score = 90.4 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 15/104 (14%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEA--------------IKIS 49
           + +S+L+  I    G  S+ ++ + ++ + + I  +  +                 I++ 
Sbjct: 1   MNKSELIAEIQSNLGASSKAEAEKALSAVLSSIKTAVKKAGKEVKLRDKDSKDAVAIQLV 60

Query: 50  SFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            F TF V ++ +R G N  T + +KI   + V FKA + LK ++
Sbjct: 61  GFGTFSVGKRSARTGINPLTKEPLKIKASKNVKFKAGAGLKDQL 104


>gi|163737907|ref|ZP_02145323.1| histone-like DNA-binding protein [Phaeobacter gallaeciensis
          BS107]
 gi|163743911|ref|ZP_02151282.1| DNA-binding protein HU [Phaeobacter gallaeciensis 2.10]
 gi|161382852|gb|EDQ07250.1| DNA-binding protein HU [Phaeobacter gallaeciensis 2.10]
 gi|161388523|gb|EDQ12876.1| histone-like DNA-binding protein [Phaeobacter gallaeciensis
          BS107]
          Length = 95

 Score = 90.4 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 42/95 (44%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSK +T++ LV ++++E    +K +   +  +   I      G A+ +      + +++ 
Sbjct: 1  MSKPMTKTQLVAALAEEMDSDKKAAGAALDAVCALITREVSGGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R  RN  T ++   +  +VV    +  LK  +  
Sbjct: 61 EREVRNPATGEKFTKEADKVVKMTIAKALKDSVNG 95


>gi|11514467|pdb|1EXE|A Chain A, Solution Structure Of A Mutant Of Transcription Factor
          1.
 gi|11514468|pdb|1EXE|B Chain B, Solution Structure Of A Mutant Of Transcription Factor 1
          Length = 99

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 48/88 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K+I+++ GL++   ++ + +    I ++  +G+ ++++ F       + +R G
Sbjct: 1  MNKTELIKAIAQDTGLTQVSVSKMLASFEKIITETVAKGDKVQLTGFLNIKPVARQARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
           N QT + ++I P   V  K    LKK 
Sbjct: 61 FNPQTQEALEIAPSVGVSVKPGESLKKA 88


>gi|195952487|ref|YP_002120777.1| histone family protein DNA-binding protein [Hydrogenobaculum sp.
          Y04AAS1]
 gi|195932099|gb|ACG56799.1| histone family protein DNA-binding protein [Hydrogenobaculum sp.
          Y04AAS1]
          Length = 102

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 7/97 (7%)

Query: 5  ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSA--VRGEAIKISSFATFHVK 57
          + + DL+  +      +   L ++D +R +    N + D+    +   I++S F TF++K
Sbjct: 1  MRKKDLLDQVMIKLQKQNTKLKKRDVSRIINMFLNALEDAIISKKENKIQLSGFGTFYIK 60

Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          ++  R+GRN +T    KI PR  + FK S     ++ 
Sbjct: 61 ERKPRIGRNPKTGDLYKIPPRYNLTFKPSQNFVLQVN 97


>gi|296129746|ref|YP_003636996.1| histone family protein DNA-binding protein [Cellulomonas
          flavigena DSM 20109]
 gi|296021561|gb|ADG74797.1| histone family protein DNA-binding protein [Cellulomonas
          flavigena DSM 20109]
          Length = 93

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 48/92 (52%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          ++ R++LV++++++ GL+  D+ + +  L   + +    G ++ I  F      ++ +R 
Sbjct: 2  SVNRTELVQAVAEKAGLTNVDADKALKALQEVVVEQLAAGGSVSIPGFLAVARAERAART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          G N QT ++++I     V   A S LK+ +  
Sbjct: 62 GVNPQTGEKLEIPAGHRVKITAGSALKRAVQG 93


>gi|254455329|ref|ZP_05068758.1| bacterial DNA-binding protein [Candidatus Pelagibacter sp.
          HTCC7211]
 gi|207082331|gb|EDZ59757.1| bacterial DNA-binding protein [Candidatus Pelagibacter sp.
          HTCC7211]
          Length = 99

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 50/99 (50%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M   +T+ DLV  +  + G S++ S   +    + I  +    + +K+S F TF ++QK 
Sbjct: 1  MRINLTKKDLVNLVYMQLGFSKQISENLIEDFLSTIIKNIKLEKKLKLSKFGTFSIRQKK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          SR+GRN +T +   I  R VV+FK S   K  I     G
Sbjct: 61 SRIGRNPKTKESKIISSRDVVLFKPSKEFKDFINLKDNG 99


>gi|254454440|ref|ZP_05067877.1| DNA-binding protein HU [Octadecabacter antarcticus 238]
 gi|198268846|gb|EDY93116.1| DNA-binding protein HU [Octadecabacter antarcticus 238]
          Length = 96

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 46/94 (48%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +K +T++ LV +++++ G  +K ++  +  +   I      G A+ +      + +++  
Sbjct: 3  TKPMTKTQLVAALAEDMGTDKKSASAALDAMVGLITREVSGGGAVTLPGVGKIYCRERPE 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          R+ RN  T +++K D  +VV    +  LK  +  
Sbjct: 63 RMVRNPATGEQIKKDADKVVKMTIAKALKDSVNG 96


>gi|254166674|ref|ZP_04873528.1| DNA-binding protein HU [Aciduliprofundum boonei T469]
 gi|254168488|ref|ZP_04875332.1| DNA-binding protein HU [Aciduliprofundum boonei T469]
 gi|289596099|ref|YP_003482795.1| histone family protein DNA-binding protein [Aciduliprofundum
          boonei T469]
 gi|197622543|gb|EDY35114.1| DNA-binding protein HU [Aciduliprofundum boonei T469]
 gi|197624284|gb|EDY36845.1| DNA-binding protein HU [Aciduliprofundum boonei T469]
 gi|289533886|gb|ADD08233.1| histone family protein DNA-binding protein [Aciduliprofundum
          boonei T469]
          Length = 89

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 47/83 (56%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          S+L K+++K+ G+S+K +   +    +E+ D   +G  + +  F  F  + + +R  RN 
Sbjct: 5  SELAKTVAKKTGVSQKQARMVIRAFVDEVIDQVNKGNKVNLVGFGIFERRVQKARKARNP 64

Query: 68 QTNQEVKIDPRRVVVFKASSILK 90
          +T + + +  ++  VF+ASS +K
Sbjct: 65 RTKEVINVPEKKKFVFRASSKIK 87


>gi|78224249|ref|YP_385996.1| histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
 gi|78195504|gb|ABB33271.1| Histone-like DNA-binding protein [Geobacter metallireducens
          GS-15]
          Length = 70

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%)

Query: 28 FVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASS 87
           V  L  +I  +  R + IKI+ F  F VK+K  R GRN QT + + I  RRV+ FK S+
Sbjct: 1  MVEVLLEQIKKTLEREDRIKITGFGNFEVKRKADRRGRNPQTGEALTIQSRRVLTFKPSA 60

Query: 88 ILKKRIMDD 96
          +LK  I  +
Sbjct: 61 VLKNSINGE 69


>gi|15672862|ref|NP_267036.1| HU-like DNA-binding protein [Lactococcus lactis subsp. lactis
          Il1403]
 gi|12723810|gb|AAK04978.1|AE006322_6 HU-like DNA-binding protein [Lactococcus lactis subsp. lactis
          Il1403]
 gi|12830842|gb|AAK08215.1|AF320914_2 HllB [Lactococcus lactis]
 gi|326406426|gb|ADZ63497.1| DNA-binding protein HU-beta [Lactococcus lactis subsp. lactis
          CV56]
          Length = 115

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 46/91 (50%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L+  ++    LS+ ++ + +      I      G  + IS+F TF V+++ +RV  +
Sbjct: 4  KQELIDYVADRTELSKVNAAKAINAFVEAITYYISEGTPVHISNFGTFEVRKRAARVSHD 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          + + +++ +  + + VF+A   LK     ++
Sbjct: 64 VHSREKILVGEQNIPVFRAGKALKLATKQEL 94


>gi|182438375|ref|YP_001826094.1| putative DNA-binding protein HU 1 [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|239941634|ref|ZP_04693571.1| putative DNA-binding protein HU 1 [Streptomyces roseosporus NRRL
          15998]
 gi|239988096|ref|ZP_04708760.1| putative DNA-binding protein HU 1 [Streptomyces roseosporus NRRL
          11379]
 gi|282865174|ref|ZP_06274227.1| histone family protein DNA-binding protein [Streptomyces sp.
          ACTE]
 gi|291445076|ref|ZP_06584466.1| DNA-binding protein Hu 1 [Streptomyces roseosporus NRRL 15998]
 gi|326779026|ref|ZP_08238291.1| histone family protein DNA-binding protein [Streptomyces cf.
          griseus XylebKG-1]
 gi|178466891|dbj|BAG21411.1| putative DNA-binding protein Hu 1 [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|282560097|gb|EFB65646.1| histone family protein DNA-binding protein [Streptomyces sp.
          ACTE]
 gi|291348023|gb|EFE74927.1| DNA-binding protein Hu 1 [Streptomyces roseosporus NRRL 15998]
 gi|320010510|gb|ADW05360.1| histone family protein DNA-binding protein [Streptomyces
          flavogriseus ATCC 33331]
 gi|326659359|gb|EGE44205.1| histone family protein DNA-binding protein [Streptomyces cf.
          griseus XylebKG-1]
          Length = 93

 Score = 90.4 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV +++    ++RKD+   +  L   + +   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAALAETVGEIVAKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           RN QT   + I     V   A S LK+ 
Sbjct: 61 ARNPQTGDPINIPAGYSVKVSAGSKLKEA 89


>gi|110639133|ref|YP_679342.1| DNA-binding protein HU-beta [Cytophaga hutchinsonii ATCC 33406]
 gi|110281814|gb|ABG60000.1| DNA-binding protein HU-beta [Cytophaga hutchinsonii ATCC 33406]
          Length = 90

 Score = 90.4 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 36/66 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+ +I+ E  L++ DS R +    N    +  +GE++ +  F +F    + +R G
Sbjct: 1  MNKAELIDAIAAESKLTKADSKRALDAFLNATGKALKKGESVVLIGFGSFKTATRAARNG 60

Query: 65 RNLQTN 70
          RN QT 
Sbjct: 61 RNPQTG 66


>gi|254386635|ref|ZP_05001932.1| histone-like DNA-binding protein [Streptomyces sp. Mg1]
 gi|194345477|gb|EDX26443.1| histone-like DNA-binding protein [Streptomyces sp. Mg1]
          Length = 93

 Score = 90.4 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV ++S+   ++RKD+   +  L   I +   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALSERAEVTRKDADAVLAALAETIGEVVAKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           RN QT   ++I     V   A S LK+ 
Sbjct: 61 ARNPQTGDPIQIPAGFSVKVSAGSKLKEA 89


>gi|313206026|ref|YP_004045203.1| bacterial nucleoid protein hbs [Riemerella anatipestifer DSM
          15868]
 gi|312445342|gb|ADQ81697.1| bacterial nucleoid protein Hbs [Riemerella anatipestifer DSM
          15868]
 gi|325336533|gb|ADZ12807.1| Bacterial nucleoid DNA-binding protein [Riemerella anatipestifer
          RA-GD]
          Length = 96

 Score = 90.4 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRV 63
          + +S+L+  ++K+  +++  + + + +  N + ++  + +  + +  F TF V ++ +R 
Sbjct: 1  MNKSELIDVMAKDAEITKAAAKKALESFVNAVTETLKKKDGKVSLVGFGTFSVAERAARQ 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          G N  T + +KI  ++V  FKA S L   +    +
Sbjct: 61 GINPATKKAIKIPAKKVAKFKAGSELADAVAGAKK 95


>gi|260425403|ref|ZP_05779383.1| DNA-binding protein HU [Citreicella sp. SE45]
 gi|260423343|gb|EEX16593.1| DNA-binding protein HU [Citreicella sp. SE45]
          Length = 95

 Score = 90.0 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 45/95 (47%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +T++ LV ++++E G  +K ++  +  +   I      G A+ +      + +++ 
Sbjct: 1  MAKPMTKTQLVAALAEEMGADKKTASAALDAITGIITKEVADGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R+ RN  T ++ K +  + V    +  LK  +  
Sbjct: 61 ERMVRNPATGEQFKKEADKQVKMTIAKALKDSVNG 95


>gi|325300201|ref|YP_004260118.1| histone family protein DNA-binding protein [Bacteroides
          salanitronis DSM 18170]
 gi|324319754|gb|ADY37645.1| histone family protein DNA-binding protein [Bacteroides
          salanitronis DSM 18170]
          Length = 90

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++LVK IS+  G         + +  +E+  S  RG+ + + SF TF +K +  +V 
Sbjct: 1  MTKAELVKEISQTTGTDSVTILSVIESFMSEVKSSLERGDEVTLRSFGTFCLKHRAEKVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RNL  N  + I    +  FK S+   KR+ 
Sbjct: 61 RNLSLNTSMVIPEHDIPSFKPSTEFLKRLK 90


>gi|34762422|ref|ZP_00143422.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. vincentii
          ATCC 49256]
 gi|237741782|ref|ZP_04572263.1| DNA-binding protein HU [Fusobacterium sp. 4_1_13]
 gi|256845110|ref|ZP_05550568.1| integration host factor, alpha subunit [Fusobacterium sp.
          3_1_36A2]
 gi|294785602|ref|ZP_06750890.1| DNA-binding protein HU [Fusobacterium sp. 3_1_27]
 gi|27887890|gb|EAA24958.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. vincentii
          ATCC 49256]
 gi|229429430|gb|EEO39642.1| DNA-binding protein HU [Fusobacterium sp. 4_1_13]
 gi|256718669|gb|EEU32224.1| integration host factor, alpha subunit [Fusobacterium sp.
          3_1_36A2]
 gi|294487316|gb|EFG34678.1| DNA-binding protein HU [Fusobacterium sp. 3_1_27]
          Length = 91

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 50/92 (54%), Gaps = 3/92 (3%)

Query: 5  ITRSDLVKSISKEFGL--SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T+ +  K + ++ G+  +R ++ + V  +FN +    + GE + I +F    V ++  R
Sbjct: 1  MTKKEFAKLLFEK-GIFTTRTEAEKKVDIIFNSMEKILLDGENLSIINFGKLEVIERAPR 59

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +GRN +T +EVKI  R+ + F+      +++ 
Sbjct: 60 LGRNPKTGEEVKIGKRKSIKFRPGKAFLEKLN 91


>gi|189220184|ref|YP_001940824.1| nucleoid DNA-binding protein [Methylacidiphilum infernorum V4]
 gi|189187042|gb|ACD84227.1| Bacterial nucleoid DNA-binding protein [Methylacidiphilum
          infernorum V4]
          Length = 99

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 6  TRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           ++ LV+ + K  G   ++  + + V  + N +    ++   +++  F TF V  + +R+
Sbjct: 10 NKASLVEVVQKNMGKDTTKALAEKSVDAVINGLKTGVLKNGIVQLIGFGTFRVITRKARM 69

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          G N +T +++KI   + V F     LK+++
Sbjct: 70 GVNPKTGEKIKIKASKTVRFSPGKELKEKL 99


>gi|332827120|gb|EGJ99905.1| hypothetical protein HMPREF9455_03778 [Dysgonomonas gadei ATCC
          BAA-286]
          Length = 96

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 44/91 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T  +L+ +++K  G +++ ++  +    + I  +   G +I I  F  F  K+KG R+ 
Sbjct: 1  MTNQELIAALAKRLGWTQRQTSEVLEATVSIINSNLEDGNSINIQGFGLFETKKKGERIS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N  + Q   + P+  + F+    +K  + +
Sbjct: 61 VNPVSKQRFLVPPKISLAFRPGQTIKDNLKN 91


>gi|1580711|dbj|BAA11644.1| HupB, beta-subunit of HU [Escherichia coli W3110]
          Length = 54

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 41 VRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            G+ + +  F TF VK++ +R GRN QT +E+ I   +V  F+A   LK  + 
Sbjct: 1  KEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN 54


>gi|189485571|ref|YP_001956512.1| DNA-binding protein HU-1 [uncultured Termite group 1 bacterium
          phylotype Rs-D17]
 gi|170287530|dbj|BAG14051.1| DNA-binding protein HU-1 [uncultured Termite group 1 bacterium
          phylotype Rs-D17]
          Length = 89

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 47/89 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + D+VK +S   GL++ DS + +  L   I  +      I +S   +F  K + +R G
Sbjct: 1  MKKPDIVKQVSDISGLTQGDSNKAIKALVKVIQITLKNNGVISLSGLGSFRAKTRKARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I P + V FK ++ L+K I
Sbjct: 61 RNPKTKEVILIPPGKKVSFKPTTTLRKII 89


>gi|46446802|ref|YP_008167.1| putative integration host factor [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400443|emb|CAF23892.1| putative integration host factor [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 120

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L+ SIS++ G+   D    +    ++I D   +GE ++   F  F V ++  ++GRN + 
Sbjct: 24  LINSISQDKGIHPNDVRHVIQAFLDKITDCLSQGERLEFREFGVFEVVERKQKIGRNPKN 83

Query: 70  NQ-EVKIDPRRVVVFKASSILKKRIM 94
               + I  R+ V F     +++ + 
Sbjct: 84  AAVPIVIPARQAVKFTPGKKMRQVVE 109


>gi|325989776|ref|YP_004249475.1| Histone-like DNA-binding superfamily protein HimA [Mycoplasma
          suis KI3806]
 gi|323574861|emb|CBZ40521.1| Histone-like DNA-binding superfamily protein HimA/HU/Integration
          host factor (himA/hup_1) [Mycoplasma suis]
          Length = 102

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 44/92 (47%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L+K ++ + G ++ +    +      I ++  +   + +  F +F V ++ +R G N
Sbjct: 4  KDELIKHLADKCGCTQNNVASVLREYQYLILENLKKEGKVNVLEFGSFEVVKRSARTGVN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           QT  ++ I  + V   KAS   K+ +   ++
Sbjct: 64 PQTKAKIDIPEKEVPRLKASKKFKEFVSGQVK 95


>gi|313185029|gb|ADR50079.1| histone-like protein HBbu [Borrelia burgdorferi]
          Length = 108

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           IT+SD+V  IS         L +K     +   F E+  +      I+  SF TF V+++
Sbjct: 9   ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68

Query: 60  GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R   RN QT + VK     V  F+    LK+R+  
Sbjct: 69  KGRLNARNPQTGEYVKGLDHHVAYFRPGKDLKERVWG 105


>gi|114765808|ref|ZP_01444901.1| DNA-binding protein HU [Pelagibaca bermudensis HTCC2601]
 gi|114541807|gb|EAU44844.1| DNA-binding protein HU [Roseovarius sp. HTCC2601]
          Length = 95

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 45/95 (47%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +T++ LV ++++E G  +K ++  +  +   I      G A+ +      + +++ 
Sbjct: 1  MAKPMTKTQLVAALAEEMGADKKTASTALDAITGIITKEVAEGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R+ RN  T ++ K +  + V    +  LK  +  
Sbjct: 61 ERMVRNPATGEQFKKEADKQVKMTIAKALKDSVNG 95


>gi|237744930|ref|ZP_04575411.1| DNA-binding protein HU [Fusobacterium sp. 7_1]
 gi|256028389|ref|ZP_05442223.1| DNA-binding protein HU [Fusobacterium sp. D11]
 gi|260494711|ref|ZP_05814841.1| integration host factor, alpha subunit [Fusobacterium sp. 3_1_33]
 gi|289766314|ref|ZP_06525692.1| DNA-binding protein HU [Fusobacterium sp. D11]
 gi|229432159|gb|EEO42371.1| DNA-binding protein HU [Fusobacterium sp. 7_1]
 gi|260197873|gb|EEW95390.1| integration host factor, alpha subunit [Fusobacterium sp. 3_1_33]
 gi|289717869|gb|EFD81881.1| DNA-binding protein HU [Fusobacterium sp. D11]
          Length = 91

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+ +  K + ++    +R ++ + V  +FN +    + GE + I +F    V ++  R+
Sbjct: 1  MTKKEFAKLLFEKGVFTTRTEAEKKVDIIFNSMEKILLDGENLSIINFGKLEVIERAPRL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +EVKI  R+ + F+      +++ 
Sbjct: 61 GRNPKTGEEVKIGKRKSIKFRPGKAFLEKLN 91


>gi|189464081|ref|ZP_03012866.1| hypothetical protein BACINT_00416 [Bacteroides intestinalis DSM
          17393]
 gi|198275171|ref|ZP_03207702.1| hypothetical protein BACPLE_01329 [Bacteroides plebeius DSM
          17135]
 gi|255010947|ref|ZP_05283073.1| putative HU-like DNA binding protein [Bacteroides fragilis
          3_1_12]
 gi|298482410|ref|ZP_07000596.1| DNA-binding protein HU [Bacteroides sp. D22]
 gi|313148752|ref|ZP_07810945.1| predicted protein [Bacteroides fragilis 3_1_12]
 gi|317477426|ref|ZP_07936654.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
 gi|189438415|gb|EDV07400.1| hypothetical protein BACINT_00416 [Bacteroides intestinalis DSM
          17393]
 gi|198271991|gb|EDY96261.1| hypothetical protein BACPLE_01329 [Bacteroides plebeius DSM
          17135]
 gi|298271389|gb|EFI12964.1| DNA-binding protein HU [Bacteroides sp. D22]
 gi|313137519|gb|EFR54879.1| predicted protein [Bacteroides fragilis 3_1_12]
 gi|316906408|gb|EFV28134.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 92

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+K ++++     K+    + + F E+  +    + + I  F TF    + +R+ 
Sbjct: 3  MNKTDLIKMVAEKANKPTKEVAEIIDSFFKELSQNLREKD-VSIKDFGTFKKIIQPARIA 61

Query: 65 RNLQTNQEVKIDPRRVVVFKASS 87
          RN  T + V++  + VV FK S 
Sbjct: 62 RNPATGEPVEVPEKEVVKFKPSK 84


>gi|325973340|ref|YP_004250404.1| DNA-binding protein [Mycoplasma suis str. Illinois]
 gi|323651942|gb|ADX98024.1| DNA-binding protein [Mycoplasma suis str. Illinois]
          Length = 102

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 44/92 (47%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L+K ++ + G ++ +    +      I ++  +   + +  F +F V ++ +R G N
Sbjct: 4  KDELIKHLADKCGCTQNNVASVLREYQYLILENLKKEGKVNVLEFGSFEVVKRSARTGIN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           QT  ++ I  + V   KAS   K+ +   ++
Sbjct: 64 PQTKAKIDIPEKEVPRLKASKKFKEFVSGQVK 95


>gi|325283874|ref|YP_004256415.1| histone family protein DNA-binding protein [Deinococcus
          proteolyticus MRP]
 gi|324315683|gb|ADY26798.1| histone family protein DNA-binding protein [Deinococcus
          proteolyticus MRP]
          Length = 94

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 1  MSK-TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          M+K  + +++L   IS++ GLSRK +   V +    + D+  +G  + + +  TF + Q 
Sbjct: 1  MNKGKVAKAELAARISEQTGLSRKQAGDVVASAVGLMVDALKQGRTVGLPNLGTFSISQT 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            R G    T + + I   + V FK S+ L+ ++
Sbjct: 61 SQRQGVRPGTTERITIPAGKKVRFKISTGLRDQL 94


>gi|83309465|ref|YP_419729.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1]
 gi|82944306|dbj|BAE49170.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magneticum AMB-1]
          Length = 89

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 40/89 (44%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++S + K+I +  G +   +   V  +   I +         +  F +F   ++ +R G
Sbjct: 1  MSKSAMSKAIRQAAGCTVAQADAAVEAVLATIVEGVKTEGRFSLIGFGSFSKSERPARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I     + F  S+ LKK +
Sbjct: 61 RNPRTGKTIDIAASTSIKFSTSAALKKSL 89


>gi|289650209|ref|ZP_06481552.1| single-stranded binding protein [Pseudomonas syringae pv. aesculi
          str. 2250]
          Length = 97

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 40/93 (43%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  LV  I++     +  + + +  L   + D    G  I +       V ++ +R 
Sbjct: 2  ALTKDQLVVGIAEAIDAPKTTARKTLEQLGQIVADQLESGAEITLPGIGKLKVAERPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN  T   ++I  ++VV F ++ +L   I   
Sbjct: 62 GRNPSTGAAIEIAAKKVVKFVSAKVLNDAINKG 94


>gi|256379997|ref|YP_003103657.1| histone family protein DNA-binding protein [Actinosynnema mirum
          DSM 43827]
 gi|255924300|gb|ACU39811.1| histone family protein DNA-binding protein [Actinosynnema mirum
          DSM 43827]
          Length = 285

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L++++++  G  +K++   V  + + I  S  +GE + I+ F  F  + + +R  
Sbjct: 1  MNKAQLIEALAERLG-DKKNAAAAVDGIVDVIVRSVHKGEKVNITGFGVFEKRARAARTA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+    V  F+A S  K  I    +
Sbjct: 60 RNPRTGETVKVKKTNVPAFRAGSTFKDVISGAKK 93


>gi|302544965|ref|ZP_07297307.1| DNA-binding protein HU [Streptomyces hygroscopicus ATCC 53653]
 gi|307331132|ref|ZP_07610259.1| histone family protein DNA-binding protein [Streptomyces
          violaceusniger Tu 4113]
 gi|302462583|gb|EFL25676.1| DNA-binding protein HU [Streptomyces himastatinicus ATCC 53653]
 gi|306883212|gb|EFN14271.1| histone family protein DNA-binding protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 93

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV ++S+   ++RKD+   +  L     +   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALSERAEVTRKDADAVLAALAEVTGEVVAKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           RN QT + ++I     V   A S LK+ 
Sbjct: 61 ARNPQTGEPIEIPAGYSVKVSAGSKLKEA 89


>gi|126738405|ref|ZP_01754110.1| DNA-binding protein HU [Roseobacter sp. SK209-2-6]
 gi|126720204|gb|EBA16910.1| DNA-binding protein HU [Roseobacter sp. SK209-2-6]
          Length = 97

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 44/96 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSK +T++ LV ++++E G  +K +   +  +   I      G A+ +      + +++ 
Sbjct: 1  MSKPMTKTQLVATLAEEMGADKKTAGAALEAVCALITREVSGGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           R  RN  T ++   +  +VV    +  LK  +  +
Sbjct: 61 EREVRNPATGEKFMKEADKVVKMTIAKALKDSVNGE 96


>gi|253572936|ref|ZP_04850333.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251837463|gb|EES65557.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 92

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+K ++++     K+    + + F E+  +    + + I  F TF    + +R+ 
Sbjct: 3  MNKTDLIKMVAEKANKPTKEVAEIIDSFFKELSQNLREKD-VSIKDFGTFKKIIQPARIA 61

Query: 65 RNLQTNQEVKIDPRRVVVFKASS 87
          RN  T + V++  + VV FK S 
Sbjct: 62 RNPATGEPVEVPEKEVVKFKPSK 84


>gi|254456031|ref|ZP_05069460.1| integration host factor beta-subunit [Candidatus Pelagibacter sp.
          HTCC7211]
 gi|207083033|gb|EDZ60459.1| integration host factor beta-subunit [Candidatus Pelagibacter sp.
          HTCC7211]
          Length = 97

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 1/93 (1%)

Query: 7  RSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          +S L+K +S       +KD  +F   +  EI ++  RG+ +++  F  F    + +R+ R
Sbjct: 5  KSKLLKQLSDNYPNFLKKDLEKFTNIILGEIKNALKRGDRVELRGFGVFSTNIQKARISR 64

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          N +T ++V    ++ + FK S  L K++ D+ +
Sbjct: 65 NPKTGEKVNTPQKKTIHFKMSKDLFKKLNDEEQ 97


>gi|223937617|ref|ZP_03629520.1| histone family protein DNA-binding protein [bacterium Ellin514]
 gi|223893780|gb|EEF60238.1| histone family protein DNA-binding protein [bacterium Ellin514]
          Length = 95

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 46/96 (47%), Gaps = 2/96 (2%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +++S L  +I+ + G+++K +   +  +      +A       +       +  + 
Sbjct: 1  MAKALSKSQLAAAIADKNGITKKQAVEILDHIAELAYKNAKN--TFTLPGLGKLVLVNRK 58

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          +RVGRN  T +++ I  +RVV F+ +   K  I+  
Sbjct: 59 ARVGRNPATGEQINIPAKRVVKFRVAKAAKDSILGA 94


>gi|330891782|gb|EGH24443.1| single-stranded binding protein [Pseudomonas syringae pv. mori str.
           301020]
          Length = 104

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 41/98 (41%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           ++T+   +  I++     +  + + +  L   + D    G  I +       V ++ +R 
Sbjct: 2   SLTKDQFIAGIAEAIDAPKNTTGKALDQLGQIVADQLGNGAEITLPGIGKLKVAERPART 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           GR+  T   ++I  ++V+ F  +  L   I +    +K
Sbjct: 62  GRHPSTGAAIEIAAKKVIKFVPAKRLNDAINNGAPQKK 99


>gi|297159968|gb|ADI09680.1| DNA-binding protein HU 1 [Streptomyces bingchenggensis BCW-1]
          Length = 93

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63
          + RS+LV ++S+   ++RKD+   +  L     +   +G E + I  F TF    + +R 
Sbjct: 1  MNRSELVAALSERAEVTRKDADAVLAALAEVTGEIVAKGDEKVTIPGFLTFERTHRAART 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           RN QT + ++I     V   A S LK+ 
Sbjct: 61 ARNPQTGEPIEIPAGYSVKVSAGSKLKEA 89


>gi|253582555|ref|ZP_04859776.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251835425|gb|EES63965.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 91

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+ + +     +    ++ D+ R      N I +  ++ E I    F  F V ++  + 
Sbjct: 1  MTKKEFINLYFTKGEFKTKTDAERKAAAFLNLIEEVLLKEEEITFLGFGKFKVIERAPKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN QT +++KI+ ++VV FK S  L ++I 
Sbjct: 61 CRNPQTGKKMKIEAKKVVKFKPSKTLSEKIK 91


>gi|226354832|ref|YP_002784572.1| DNA-binding protein HU [Deinococcus deserti VCD115]
 gi|226316822|gb|ACO44818.1| putative DNA-binding protein HU (Histone-like protein) [Deinococcus
           deserti VCD115]
          Length = 115

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 40/84 (47%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
           ++ L++ ++    L++K +   V T+   +  +   G  + +    T  V Q  +R G  
Sbjct: 29  KTQLIEMVADRTSLNKKQAGDAVATMLECVVGALREGRNVGLPGLGTLSVAQTAARTGVR 88

Query: 67  LQTNQEVKIDPRRVVVFKASSILK 90
             T++++ I   + + FK +S LK
Sbjct: 89  PGTSEKITIPAGKKIRFKVASTLK 112


>gi|15618331|ref|NP_224616.1| integration host factor Alpha [Chlamydophila pneumoniae CWL029]
 gi|15835949|ref|NP_300473.1| integration host factor alpha [Chlamydophila pneumoniae J138]
 gi|16752623|ref|NP_444887.1| integration host factor beta-subunit, putative [Chlamydophila
          pneumoniae AR39]
 gi|33241765|ref|NP_876706.1| integration host factor beta chain [Chlamydophila pneumoniae
          TW-183]
 gi|9789718|sp|Q9Z8C7|DBH_CHLPN RecName: Full=Probable DNA-binding protein HU
 gi|4376697|gb|AAD18560.1| Integration Host Factor Alpha [Chlamydophila pneumoniae CWL029]
 gi|7189266|gb|AAF38192.1| integration host factor beta-subunit, putative [Chlamydophila
          pneumoniae AR39]
 gi|8978788|dbj|BAA98624.1| integration host factor alpha [Chlamydophila pneumoniae J138]
 gi|33236274|gb|AAP98363.1| integration host factor beta chain [Chlamydophila pneumoniae
          TW-183]
 gi|269303292|gb|ACZ33392.1| DNA-binding protein HU [Chlamydophila pneumoniae LPCoLN]
          Length = 100

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+  L+ +IS++  +        +    +++ D+ V+G+ ++   F    V ++  +V
Sbjct: 3  TMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVKGDRLEFRDFGVLQVVERKPKV 62

Query: 64 GRNLQTNQ-EVKIDPRRVVVFKASSILKKRIM 94
          GRN +     + I  RR V F     +K+ I 
Sbjct: 63 GRNPKNAAVPIHIPARRAVKFTPGKRMKRLIE 94


>gi|254885106|ref|ZP_05257816.1| DNA binding protein HU [Bacteroides sp. 4_3_47FAA]
 gi|254837899|gb|EET18208.1| DNA binding protein HU [Bacteroides sp. 4_3_47FAA]
          Length = 90

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+K ++++     K+    + + F E+  +    + + I  F TF    + +R+ 
Sbjct: 1  MNKTDLIKMVAEKANKPTKEVAEIIDSFFKELSQNLREKD-VSIKDFGTFKKIIQPARIA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASS 87
          RN  T + V++  + VV FK S 
Sbjct: 60 RNPATGEPVEVPEKEVVKFKPSK 82


>gi|255689974|ref|ZP_05413649.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565]
 gi|260624581|gb|EEX47452.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565]
          Length = 71

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%)

Query: 25 STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84
          + + +      + ++   GE + +  F TF V ++  R G N  T   + I  ++V  FK
Sbjct: 2  TKKALDAFVTSVTNAMKAGEKVSLVGFGTFSVSERAERTGINPSTKATITIPAKKVAKFK 61

Query: 85 ASSILKKRIM 94
          A + L   + 
Sbjct: 62 AGAELSAAVE 71


>gi|299068805|emb|CBJ40046.1| DNA-binding protein HU-beta [Ralstonia solanacearum CMR15]
          Length = 91

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 37/80 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+K ++ +  +S+  +   +  L   + D+   G  + I     F   ++ ++ G
Sbjct: 1  MNKQELIKHLAAQAEVSKGKAEDLLNALTTTVLDTVRAGNELTIPDLGKFGSVERAAKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFK 84
          RN +T   ++I  +R   F 
Sbjct: 61 RNPKTGSPIQIAAKRAPKFT 80


>gi|29840141|ref|NP_829247.1| integration host factor beta-subunit, putative [Chlamydophila
          caviae GPIC]
 gi|62184997|ref|YP_219782.1| integration host factor alpha-subunit [Chlamydophila abortus
          S26/3]
 gi|89898437|ref|YP_515547.1| DNA-binding protein HU [Chlamydophila felis Fe/C-56]
 gi|332287322|ref|YP_004422223.1| integration host factor alpha-subunit [Chlamydophila psittaci
          6BC]
 gi|29834489|gb|AAP05125.1| integration host factor beta-subunit, putative [Chlamydophila
          caviae GPIC]
 gi|62148064|emb|CAH63818.1| integration host factor alpha-subunit [Chlamydophila abortus
          S26/3]
 gi|89331809|dbj|BAE81402.1| DNA-binding protein HU [Chlamydophila felis Fe/C-56]
 gi|313847906|emb|CBY16901.1| integration host factor alpha-subunit [Chlamydophila psittaci
          RD1]
 gi|325507160|gb|ADZ18798.1| integration host factor alpha-subunit [Chlamydophila psittaci
          6BC]
 gi|328914565|gb|AEB55398.1| integration host factor, beta subunit, putative [Chlamydophila
          psittaci 6BC]
          Length = 100

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+  L+ +IS++  +        +    +++ D+ V+G+ ++   F    V ++  +V
Sbjct: 3  TMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVKGDRLEFRDFGVLQVVERKPKV 62

Query: 64 GRNLQTNQ-EVKIDPRRVVVFKASSILKKRIM 94
          GRN +     + I  RR V F     +K+ I 
Sbjct: 63 GRNPKNATVPIHIPARRAVKFTPGKRMKRLIE 94


>gi|52421248|ref|YP_087160.1| DNA binding protein HU [Bacteroides fragilis YCH46]
 gi|52218769|dbj|BAD51361.1| DNA binding protein HU [Bacteroides fragilis YCH46]
          Length = 90

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+K ++ E G   KD  + + T   E+ +   + E + I  F TF    + +R+ 
Sbjct: 1  MNKKDLIKVVATETGFPMKDVQKTIDTFLKELSEEVNK-EDVAIKDFGTFKTVIQKARIA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASS 87
          RN  T + V++  ++V+ FK S 
Sbjct: 60 RNPATGELVEVPEKKVLKFKPSK 82


>gi|160889559|ref|ZP_02070562.1| hypothetical protein BACUNI_01983 [Bacteroides uniformis ATCC
          8492]
 gi|156861076|gb|EDO54507.1| hypothetical protein BACUNI_01983 [Bacteroides uniformis ATCC
          8492]
          Length = 404

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 46/94 (48%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +   DL+ ++++  G+S+K++  FV   F  I +S  + + +KI    TF +   G
Sbjct: 1  MNEKLNIQDLIDTLAERHGMSKKNADSFVKEFFQLIEESLEKDKYVKIRGLGTFKLIDVG 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          SR   N+ T +  +I     V F     LK  I 
Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDIIN 94


>gi|254440395|ref|ZP_05053889.1| DNA-binding protein HU [Octadecabacter antarcticus 307]
 gi|198255841|gb|EDY80155.1| DNA-binding protein HU [Octadecabacter antarcticus 307]
          Length = 96

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 46/94 (48%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +K +T++ LV +++++ G  +K ++  +  +   I      G A+ +      + +++  
Sbjct: 3  TKPMTKTQLVAALAEDMGTDKKSASASLDAIVGLITREVSGGGAVTLPGVGKIYCRERPE 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          R+ RN  T +++K D  +VV    +  LK  +  
Sbjct: 63 RMVRNPATGEQIKKDADKVVKMTIAKALKDSVNG 96


>gi|237707812|ref|ZP_04538293.1| DNA binding protein HU [Bacteroides sp. 9_1_42FAA]
 gi|229458140|gb|EEO63861.1| DNA binding protein HU [Bacteroides sp. 9_1_42FAA]
          Length = 90

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+K ++++     K+ T  + + F E+  +    + + I  F TF    + +R+ 
Sbjct: 1  MNKTDLIKMVAEKANKPTKEVTEIIDSFFKELSQNLREKD-VSIKDFGTFKKIIQPARIA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASS 87
          RN  T + V++  + VV FK S 
Sbjct: 60 RNPATGEPVEVPEKEVVKFKPSK 82


>gi|114769939|ref|ZP_01447549.1| DNA-binding protein HU, form N [alpha proteobacterium HTCC2255]
 gi|114549644|gb|EAU52526.1| DNA-binding protein HU, form N [alpha proteobacterium HTCC2255]
          Length = 96

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 1/96 (1%)

Query: 1  MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          MS K +T++ LV ++++  G  +  + R +  L + +      G A+ +     F  + +
Sbjct: 1  MSQKPMTKTQLVANLAEATGSDKVTANRALEALADIVSKEVAAGGAVTLPGLGKFQCRAR 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            R+ RN  T ++      RV     +  LK  I D
Sbjct: 61 PERMVRNPATGEQFMKAADRVAKVTIAKALKDVIND 96


>gi|60650162|ref|YP_209715.1| putative HU-like DNA binding protein [Bacteroides fragilis NCTC
          9343]
 gi|60495242|emb|CAH05736.1| putative HU-like DNA binding protein [Bacteroides fragilis NCTC
          9343]
          Length = 90

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DL+K ++++     K+    + + F E+  +    + + I  F TF    + +R+ 
Sbjct: 1  MNKTDLIKMVAEKANKPTKEVAEIIDSFFKELSQNLREKD-VSIKDFGTFKKIIQPARIA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASS 87
          RN  T + V++  + VV FK S 
Sbjct: 60 RNPATGEPVEVPEKEVVKFKPSK 82


>gi|237744441|ref|ZP_04574922.1| DNA-binding protein HU [Fusobacterium sp. 7_1]
 gi|256027212|ref|ZP_05441046.1| DNA-binding protein HU [Fusobacterium sp. D11]
 gi|260494006|ref|ZP_05814137.1| integration host factor, beta subunit [Fusobacterium sp. 3_1_33]
 gi|289765189|ref|ZP_06524567.1| DNA-binding protein HU [Fusobacterium sp. D11]
 gi|229431670|gb|EEO41882.1| DNA-binding protein HU [Fusobacterium sp. 7_1]
 gi|260198152|gb|EEW95668.1| integration host factor, beta subunit [Fusobacterium sp. 3_1_33]
 gi|289716744|gb|EFD80756.1| DNA-binding protein HU [Fusobacterium sp. D11]
          Length = 102

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 39/69 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V + +++  L  KDS R V      I D+ ++G+ ++   F ++ VK++ +R  
Sbjct: 1  MTKKEFVNAFAEKGELKIKDSERLVNAFLETIEDALLKGDGVRFIGFGSWEVKERSAREV 60

Query: 65 RNLQTNQEV 73
          +N QT + +
Sbjct: 61 KNPQTGKMI 69


>gi|148244693|ref|YP_001219387.1| integration host factor, beta subunit [Candidatus Vesicomyosocius
          okutanii HA]
 gi|146326520|dbj|BAF61663.1| integration host factor, beta subunit [Candidatus Vesicomyosocius
          okutanii HA]
          Length = 92

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+ ++S    LS+ D+   V  +  E+    V GE ++I  F  F+ K + +R G
Sbjct: 1  MKKPDLILNLSNSSNLSKTDAKIAVEVILEELTQGIVSGEGVEIRGFGGFYKKYRKARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T++  ++  + V  FK    LK+ I  
Sbjct: 61 INPKTSERTEVSEKFVPFFKPGKFLKEIINK 91


>gi|149201305|ref|ZP_01878280.1| DNA-binding protein HU [Roseovarius sp. TM1035]
 gi|149145638|gb|EDM33664.1| DNA-binding protein HU [Roseovarius sp. TM1035]
          Length = 91

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 42/91 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++ LV +++ + G  +K +   +  +   I      G A+ +      + +++  R+ 
Sbjct: 1  MTKTQLVAALADDMGSDKKTAGAALDAVIAIITREVSAGGAVTLPGIGKIYCRERPERMV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T +++K +  +VV    +  LK  +  
Sbjct: 61 RNPATGEQMKKEADKVVKMTIAKALKDSVNG 91


>gi|53713715|ref|YP_099707.1| DNA-binding protein HU [Bacteroides fragilis YCH46]
 gi|60681986|ref|YP_212130.1| putative histone-like DNA-binding protein HU2 [Bacteroides
          fragilis NCTC 9343]
 gi|265764039|ref|ZP_06092607.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_16]
 gi|52216580|dbj|BAD49173.1| DNA-binding protein HU [Bacteroides fragilis YCH46]
 gi|60493420|emb|CAH08206.1| putative histone-like DNA-binding protein HU2 [Bacteroides
          fragilis NCTC 9343]
 gi|263256647|gb|EEZ27993.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_16]
 gi|301163424|emb|CBW22975.1| putative histone-like DNA-binding protein HU2 [Bacteroides
          fragilis 638R]
          Length = 96

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   +    +S+  G + K ++  +T+L ++I        AI I  F TF VK+K  R+ 
Sbjct: 1  MNNKEFTSELSRRLGYNTKYTSELITSLLSDITQELQESNAIGIQGFGTFEVKKKAERIV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N  T   + + P+ V+ FK S ILK +  +
Sbjct: 61 INPVTKLRLLVPPKLVLAFKPSPILKDKFKE 91


>gi|332703149|ref|ZP_08423237.1| histone family protein DNA-binding protein [Desulfovibrio
          africanus str. Walvis Bay]
 gi|332553298|gb|EGJ50342.1| histone family protein DNA-binding protein [Desulfovibrio
          africanus str. Walvis Bay]
          Length = 95

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 6  TRSDLVKSISKEFG---LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          T++  V+S+ +       ++  + +        +       E +++ +  +F +  + SR
Sbjct: 3  TKTQFVESLRQALPDVFTTKVSAEKAFDVFCETLAQGIKSNEGVRLPNVGSFALSARASR 62

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           GRN QT QE+ I  ++VV F  S  LK+ + 
Sbjct: 63 TGRNPQTGQEITIPEKKVVKFTTSKTLKEDLN 94


>gi|330444386|ref|YP_004377372.1| histone-like DNA-binding protein [Chlamydophila pecorum E58]
 gi|328807496|gb|AEB41669.1| Bacterial histone-like DNA-binding protein [Chlamydophila pecorum
          E58]
          Length = 100

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 45/96 (46%), Gaps = 1/96 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+  L+ +IS++  +        +    +++ D+ V+G+ ++   F    V ++  +V
Sbjct: 3  TMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVKGDRLEFRDFGVLQVVERKPKV 62

Query: 64 GRNLQTNQ-EVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +     + I  R+ V F     +K+ I    +
Sbjct: 63 GRNPKNAAVPIHIPARKAVKFTPGKRMKRLIETPNK 98


>gi|169825341|ref|YP_001691234.1| hypothetical protein M446_6976 [Methylobacterium sp. 4-46]
 gi|168199263|gb|ACA21209.1| hypothetical protein M446_6976 [Methylobacterium sp. 4-46]
          Length = 102

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RS   + I++    L    +   V  + + I +    G  +++  F  F    + +R 
Sbjct: 1  MLRSQFTRRIAELNPHLRSGQANAVVRAVLDRIAEGLADGSRVELRGFGAFKTVTRDARP 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           RN +T + V +  +R V FKAS  + KR+ 
Sbjct: 61 SRNPRTGELVTVPAKRDVKFKASVEVTKRLN 91


>gi|182412327|ref|YP_001817393.1| histone family protein DNA-binding protein [Opitutus terrae
          PB90-1]
 gi|177839541|gb|ACB73793.1| histone family protein DNA-binding protein [Opitutus terrae
          PB90-1]
          Length = 91

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 5  ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + +++LV  + K  G   S   + R V  +   +     R + +++  F  F V  + +R
Sbjct: 1  MNKAELVDEVRKLLGAETSTAAAERAVDAVLAAVTRGLHRDKEVQLVGFGAFAVATRAAR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKK 91
           G N  T Q +KI   + + FKA   L+ 
Sbjct: 61 RGFNPHTQQPMKIRAMKTIRFKAGQALRA 89


>gi|144898899|emb|CAM75763.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum
          gryphiswaldense MSR-1]
          Length = 87

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 41/87 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          ++++ + K+I      +   +   V  L   I D        ++  F TF   ++ +R G
Sbjct: 1  MSKTAISKAIRTATSCTAAQADEAVDALVATILDGVKSEGRFRMIGFGTFSKSERPARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN QT + ++I     + FKASS LKK
Sbjct: 61 RNPQTGKTIEIAASSTIKFKASSSLKK 87


>gi|270296683|ref|ZP_06202882.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270272670|gb|EFA18533.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 393

 Score = 88.8 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 46/94 (48%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +   DL+ ++++  G+S+K++  FV   F  I +S  + + +KI    TF +   G
Sbjct: 1  MNEKLNIQDLIDTLAERHGMSKKNADSFVKEFFQLIEESLEKDKYVKIRGLGTFKLIDVG 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          SR   N+ T +  +I     V F     LK  I 
Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDIIN 94


>gi|240142432|ref|YP_002966942.1| putative integration host factor [Methylobacterium extorquens AM1]
 gi|240012376|gb|ACS43601.1| Putative integration host factor [Methylobacterium extorquens AM1]
          Length = 140

 Score = 88.8 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 50/96 (52%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T ++L   ++   GL  ++++R V    + + +    GE +K+  F  F V+ + +R  
Sbjct: 45  MTLAELESVLAGRLGLGSEETSRVVRAALSLVAERLAAGEDVKLQGFGRFCVRDRPARRR 104

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           ++ +  +E+++  RR  VF+ S +L++ +      R
Sbjct: 105 KDPRDGRELEVPARRGAVFRPSRLLREALNRSSEDR 140


>gi|317480051|ref|ZP_07939163.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36]
 gi|316903793|gb|EFV25635.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36]
          Length = 393

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 46/94 (48%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +   DL+ ++++  G+S+K++  FV   F  I +S  + + +KI    TF +   G
Sbjct: 1  MNEKLNIQDLIDTLAERHGMSKKNADSFVKEFFQLIEESLEKDKYVKIRGLGTFKLIDVG 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          SR   N+ T +  +I     V F     LK  I 
Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDIIN 94


>gi|291513675|emb|CBK62885.1| Bacterial nucleoid DNA-binding protein [Alistipes shahii WAL
          8301]
          Length = 89

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 34/85 (40%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ DL+  +  + G +       +    + I +   R E + +  F TF  K++  +  
Sbjct: 1  MTKQDLITVVGSKTGQNDSHVRPIIEATLDAIKECVQRKEPVYLRGFGTFQPKKRAEKKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+     + +    V  FK S   
Sbjct: 61 RNITAGTTIIVPAHEVAHFKPSKSF 85


>gi|116511709|ref|YP_808925.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris
          SK11]
 gi|116107363|gb|ABJ72503.1| nucleoid DNA-binding protein [Lactococcus lactis subsp. cremoris
          SK11]
          Length = 120

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 43/84 (51%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L+  ++    LS+ ++ + +      I      G  + IS+F TF V++  +R+  +
Sbjct: 4  KQELIDYVADRTELSKVNAAKAINAFVEAITYYISEGATVHISNFGTFEVRKHAARISHD 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90
          + + +++ +  + + VF+A   LK
Sbjct: 64 VHSREKILVGEQNIPVFRAGKALK 87


>gi|284032739|ref|YP_003382670.1| histone family protein DNA-binding protein [Kribbella flavida DSM
          17836]
 gi|283812032|gb|ADB33871.1| histone family protein DNA-binding protein [Kribbella flavida DSM
          17836]
          Length = 197

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 47/95 (49%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63
          + +S LV++++  F  +R+ +   + ++ + +      +G  + I+ F  F   ++G+R+
Sbjct: 1  MNKSQLVEALAVHFDGNRRSAQHALESVIDTVQRELTKKGGKVAITGFGAFEAIERGARM 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           RN +T +  +     V  F+A + LK  +    +
Sbjct: 61 VRNPRTGETKRAKKTVVPKFRAGAELKAVVSGAKK 95


>gi|218259923|ref|ZP_03475438.1| hypothetical protein PRABACTJOHN_01099 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224840|gb|EEC97490.1| hypothetical protein PRABACTJOHN_01099 [Parabacteroides johnsonii
           DSM 18315]
          Length = 99

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 42/97 (43%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + R D+ K  +   G+       FV      + D  + G  + I  F +F   ++ SR  
Sbjct: 1   MNRKDIEKITAARLGVPVTTVEPFVQAFLETVSDCLMYGHHVTIQRFGSFRRWEQTSRPV 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           RN +T +   ++PR  V F     L +++  D+  ++
Sbjct: 61  RNPRTGEPCMLEPRTSVKFNPGKTLFEKMNTDLVDKQ 97


>gi|15604988|ref|NP_219772.1| integration host factor alpha-subunit [Chlamydia trachomatis
          D/UW-3/CX]
 gi|15835156|ref|NP_296915.1| integration host factor beta subunit, putative [Chlamydia
          muridarum Nigg]
 gi|76788989|ref|YP_328075.1| integration host factor alpha-subunit [Chlamydia trachomatis
          A/HAR-13]
 gi|166154478|ref|YP_001654596.1| integration host factor alpha-subunit [Chlamydia trachomatis
          434/Bu]
 gi|166155353|ref|YP_001653608.1| integration host factor alpha-subunit [Chlamydia trachomatis
          L2b/UCH-1/proctitis]
 gi|237802690|ref|YP_002887884.1| integration host factor alpha-subunit [Chlamydia trachomatis
          B/Jali20/OT]
 gi|237804612|ref|YP_002888766.1| integration host factor alpha-subunit [Chlamydia trachomatis
          B/TZ1A828/OT]
 gi|255311068|ref|ZP_05353638.1| integration host factor alpha-subunit [Chlamydia trachomatis
          6276]
 gi|255317369|ref|ZP_05358615.1| integration host factor alpha-subunit [Chlamydia trachomatis
          6276s]
 gi|255348627|ref|ZP_05380634.1| integration host factor alpha-subunit [Chlamydia trachomatis 70]
 gi|255503167|ref|ZP_05381557.1| integration host factor alpha-subunit [Chlamydia trachomatis 70s]
 gi|255506845|ref|ZP_05382484.1| integration host factor alpha-subunit [Chlamydia trachomatis
          D(s)2923]
 gi|270285328|ref|ZP_06194722.1| integration host factor alpha-subunit [Chlamydia muridarum Nigg]
 gi|270289344|ref|ZP_06195646.1| integration host factor alpha-subunit [Chlamydia muridarum Weiss]
 gi|301335738|ref|ZP_07223982.1| integration host factor alpha-subunit [Chlamydia trachomatis
          L2tet1]
 gi|301336725|ref|ZP_07224927.1| integration host factor alpha-subunit [Chlamydia muridarum
          MopnTet14]
 gi|54036943|sp|P64387|DBH_CHLMU RecName: Full=Probable DNA-binding protein HU
 gi|54040776|sp|P64386|DBH_CHLTR RecName: Full=Probable DNA-binding protein HU
 gi|3328679|gb|AAC67860.1| Integration Host Factor Alpha [Chlamydia trachomatis D/UW-3/CX]
 gi|7190578|gb|AAF39378.1| integration host factor beta subunit, putative [Chlamydia
          muridarum Nigg]
 gi|76167519|gb|AAX50527.1| integration host factor alpha-subunit [Chlamydia trachomatis
          A/HAR-13]
 gi|165930466|emb|CAP03959.1| integration host factor alpha-subunit [Chlamydia trachomatis
          434/Bu]
 gi|165931341|emb|CAP06913.1| integration host factor alpha-subunit [Chlamydia trachomatis
          L2b/UCH-1/proctitis]
 gi|231272912|emb|CAX09823.1| integration host factor alpha-subunit [Chlamydia trachomatis
          B/TZ1A828/OT]
 gi|231273924|emb|CAX10716.1| integration host factor alpha-subunit [Chlamydia trachomatis
          B/Jali20/OT]
 gi|289525306|emb|CBJ14782.1| integration host factor alpha-subunit [Chlamydia trachomatis
          Sweden2]
 gi|296434856|gb|ADH17034.1| integration host factor alpha-subunit [Chlamydia trachomatis
          E/150]
 gi|296435783|gb|ADH17957.1| integration host factor alpha-subunit [Chlamydia trachomatis
          G/9768]
 gi|296436708|gb|ADH18878.1| integration host factor alpha-subunit [Chlamydia trachomatis
          G/11222]
 gi|296437643|gb|ADH19804.1| integration host factor alpha-subunit [Chlamydia trachomatis
          G/11074]
 gi|296438576|gb|ADH20729.1| integration host factor alpha-subunit [Chlamydia trachomatis
          E/11023]
 gi|297140142|gb|ADH96900.1| integration host factor alpha-subunit [Chlamydia trachomatis
          G/9301]
 gi|297748397|gb|ADI50943.1| Integration host factor beta-subunit [Chlamydia trachomatis D-EC]
 gi|297749277|gb|ADI51955.1| Integration host factor beta-subunit [Chlamydia trachomatis D-LC]
          Length = 100

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 1/96 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T+T+  L+ +IS++  +        +    +++ D+ V+G+ ++   F    V ++  +V
Sbjct: 3  TMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVQGDRLEFRDFGVLQVVERKPKV 62

Query: 64 GRNLQTNQ-EVKIDPRRVVVFKASSILKKRIMDDMR 98
          GRN +     + I  RR V F     +K+ I    +
Sbjct: 63 GRNPKNAAVPIHIPARRAVKFTPGKRMKRLIETPTK 98


>gi|83747725|ref|ZP_00944760.1| DNA-binding protein HU [Ralstonia solanacearum UW551]
 gi|207743976|ref|YP_002260368.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum
          IPO1609]
 gi|83725635|gb|EAP72778.1| DNA-binding protein HU [Ralstonia solanacearum UW551]
 gi|206595378|emb|CAQ62305.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum
          IPO1609]
          Length = 91

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 38/79 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +L+K ++ +  +++  +   +  L   I D+   G  + I+    F   ++ ++ G
Sbjct: 1  MTKQELIKHLADKAEVTKGKAEDLLNALTETILDTVRAGNELTITDLGKFGSVERAAKTG 60

Query: 65 RNLQTNQEVKIDPRRVVVF 83
          RN +T   + I  +R   F
Sbjct: 61 RNPKTGDVIAIAAKRAPKF 79


>gi|189425695|ref|YP_001952872.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
 gi|189421954|gb|ACD96352.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
          Length = 96

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 41/87 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++DLV  ++ + G+++  + + +         +   G+ + +  F TF    + +R G
Sbjct: 1  MKKADLVAKMATDAGITKAQAEKALAAFTAATEAALKAGDKVTLVGFGTFSTISRKARTG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN QT +E+KI  +    F     LK 
Sbjct: 61 RNPQTGKEIKIAAKTSAKFSPGKGLKD 87


>gi|15606646|ref|NP_214026.1| DNA binding protein HU [Aquifex aeolicus VF5]
 gi|14194592|sp|O67461|DBH_AQUAE RecName: Full=DNA-binding protein HU
 gi|2983862|gb|AAC07415.1| DNA binding protein HU [Aquifex aeolicus VF5]
          Length = 94

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 6/91 (6%)

Query: 5  ITRSDLVKSISKEF------GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          +T+ ++ + I           + +K+    V+ +F  I +  ++GE +KIS F TF VK 
Sbjct: 1  MTKKEIAEEIYDRLIRDYNVKIQKKEVYNLVSEVFTIIQECLLKGEKVKISGFGTFVVKT 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSIL 89
          +  + G N++  + V++  R++V+FK S   
Sbjct: 61 RKPKKGMNIKKREIVEVPERKIVLFKPSKNF 91


>gi|320321166|gb|EFW77307.1| single-stranded binding protein [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 104

 Score = 88.0 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 40/102 (39%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T+  L   I++          + +  L   + D    G  I +       V ++ +R 
Sbjct: 2   ALTKDQLAAGIAEAIDAPNTTGRKALEQLGQIVADQLGNGAEITLPGIGKLKVAERPART 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           GRN  T   ++I  ++VV F  + +L   I +    +  NK 
Sbjct: 62  GRNPSTGAAIEIAAKKVVKFVPAKVLNDVINNGASQKTANKT 103


>gi|58039587|ref|YP_191551.1| DNA-binding protein HU-beta [Gluconobacter oxydans 621H]
 gi|58002001|gb|AAW60895.1| DNA-binding protein HU-beta [Gluconobacter oxydans 621H]
          Length = 89

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 40/89 (44%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          ++++ L   +      +   + R V  + + I +         + SF TF V +  +R  
Sbjct: 1  MSKAFLAAVLQDSMNCTGVVAQRAVNDMIDAIIEELREEGGFTLPSFGTFTVCETKARQA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T + V++   R V FKAS  LK+ +
Sbjct: 61 VNPRTGEPVEVSAGRTVRFKASPGLKQLV 89


>gi|70728443|ref|YP_258192.1| DNA-binding protein HU, nu subunit [Pseudomonas fluorescens Pf-5]
 gi|68342742|gb|AAY90348.1| DNA-binding protein HU, nu subunit [Pseudomonas fluorescens Pf-5]
          Length = 93

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 36/92 (39%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           IT+  L+  I++     +  +   +  L   + D    G  I +       V ++ +R 
Sbjct: 2  AITKDQLIADIAEAIDAPKTTARNALDQLAQIVADQLENGGEITLPGIGKLKVTERPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN  T   ++I  ++V+    +  L   +  
Sbjct: 62 GRNPSTGAAIEIAAKKVIKLVVAKGLTDAVNK 93


>gi|66044337|ref|YP_234178.1| histone-like DNA-binding protein [Pseudomonas syringae pv.
          syringae B728a]
 gi|63255044|gb|AAY36140.1| Histone-like bacterial DNA-binding protein [Pseudomonas syringae
          pv. syringae B728a]
          Length = 93

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 41/92 (44%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  L+  I++     +  +   +  L + + D   +G  I + +     V ++ +R 
Sbjct: 2  ALTKDQLIADIAEAIDAPKTTARSALEQLGHIVADQLEKGVEITLPNIGKLKVAERPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN  T   ++I  ++V+ F  + +L   I  
Sbjct: 62 GRNPSTGAAIEIAAKKVIKFVPAKVLTDSINK 93


>gi|306521780|ref|ZP_07408127.1| DNA-binding protein HU [Clostridium difficile QCD-32g58]
          Length = 64

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 33 FNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQE-VKIDPRRVVVFKASSILKK 91
           + + D+ V  E +++  F TF  +++ +R GRN +  ++ + I   +  VFKA   LK 
Sbjct: 1  MSSVQDALVNNEKVQLVGFGTFETRERAARQGRNPRDPEQVIDIPASKAPVFKAGKGLKD 60

Query: 92 RIMD 95
           I  
Sbjct: 61 IING 64


>gi|302039319|ref|YP_003799641.1| transcriptional dual regulator HU-beta [Candidatus Nitrospira
          defluvii]
 gi|300607383|emb|CBK43716.1| Transcriptional dual regulator HU-beta [Candidatus Nitrospira
          defluvii]
          Length = 95

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 49/98 (50%), Gaps = 8/98 (8%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV---RGEAIKISSFATFHVK 57
          M+K++T+S +   ++ + G+++K + +F+         +        A  +       + 
Sbjct: 1  MAKSMTKSQIADHLAGKAGITKKTAVQFLDDF-----AALAYREAKNAFVVPGIGKLVLA 55

Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           + +R+GRN QT + +KI  +RVV F+ + + K  I+ 
Sbjct: 56 NRKARMGRNPQTGEPIKIPAKRVVKFRVAKMAKDSILG 93


>gi|237741958|ref|ZP_04572439.1| DNA-binding protein HU [Fusobacterium sp. 4_1_13]
 gi|256845298|ref|ZP_05550756.1| integration host factor, beta subunit [Fusobacterium sp.
          3_1_36A2]
 gi|294785402|ref|ZP_06750690.1| DNA-binding protein HU [Fusobacterium sp. 3_1_27]
 gi|229429606|gb|EEO39818.1| DNA-binding protein HU [Fusobacterium sp. 4_1_13]
 gi|256718857|gb|EEU32412.1| integration host factor, beta subunit [Fusobacterium sp.
          3_1_36A2]
 gi|294487116|gb|EFG34478.1| DNA-binding protein HU [Fusobacterium sp. 3_1_27]
          Length = 102

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 39/69 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V + +++  L  KDS R V      + D+ ++G+ ++   F ++ VK++ +R  
Sbjct: 1  MTKKEFVNAFAEKGELKIKDSERLVNAFLETVEDALLKGDGVRFIGFGSWEVKERSAREV 60

Query: 65 RNLQTNQEV 73
          +N QT + +
Sbjct: 61 KNPQTGKMI 69


>gi|262276735|ref|ZP_06054528.1| integration host factor subunit beta (IHF-beta) [alpha
           proteobacterium HIMB114]
 gi|262223838|gb|EEY74297.1| integration host factor subunit beta (IHF-beta) [alpha
           proteobacterium HIMB114]
          Length = 103

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 2/103 (1%)

Query: 1   MSK-TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
           MSK T  +SD+VK +   F  +   +    + ++F  + ++   G  I+I    TF VK+
Sbjct: 1   MSKKTFVKSDIVKDLQGHFQKIPNNNVEHIIESIFKYLSNALSEGRNIEIRGLGTFKVKK 60

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
             +R  RN +T + ++I+ +  V +K+S +L  RI  D +  +
Sbjct: 61  MPARNARNPKTGETIQIEEKNKVKWKSSKLLNYRINKDKKIEE 103


>gi|262198187|ref|YP_003269396.1| histone family protein DNA-binding protein [Haliangium ochraceum
           DSM 14365]
 gi|262081534|gb|ACY17503.1| histone family protein DNA-binding protein [Haliangium ochraceum
           DSM 14365]
          Length = 105

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 13/103 (12%)

Query: 5   ITRSDLVKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIK--------ISSFA 52
           +T+ +L+  +  ++G    L++K     +  +F E+ D  V+ E +            F 
Sbjct: 1   MTKQELIDRVYAKYGKPANLTKKAVGDIIGGVFEELSDYFVK-EKVTKKLTPRFTFPGFG 59

Query: 53  TFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           TF  K + +R GR+ QT  E+ I     + F   S LK  + +
Sbjct: 60  TFTKKHREARKGRHPQTGAEITIGATDTLTFSIGSDLKATMNE 102


>gi|329963577|ref|ZP_08301056.1| LysM domain protein [Bacteroides fluxus YIT 12057]
 gi|328528566|gb|EGF55537.1| LysM domain protein [Bacteroides fluxus YIT 12057]
          Length = 379

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 47/94 (50%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +   DL+  ++++ G+S+KD+  FV   F  + +S  + + +KI    TF +    
Sbjct: 1  MNEKLNIQDLIDLLAEKHGMSKKDADSFVKEFFLLVEESLEKDKYVKIKGLGTFKLIDVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          SR   N+ T + ++I     V F     LK+ I 
Sbjct: 61 SRESVNVNTGERIEIQGHTKVTFTPEPSLKEVIN 94


>gi|152993465|ref|YP_001359186.1| DNA-binding protein HU [Sulfurovum sp. NBC37-1]
 gi|151425326|dbj|BAF72829.1| DNA-binding protein HU [Sulfurovum sp. NBC37-1]
          Length = 93

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++ V+ + K     S+  + R V      + ++ V  + + +  F TF       + 
Sbjct: 1  MTKAEFVELVQKNGEFESKAAAERAVKAFITSVTEALVNKDTVSLVGFGTFSTVDVAEKS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          G+   TN+           FK    LK  +  +
Sbjct: 61 GKVPGTNKTYTKPAHTAPKFKIGKTLKDAVAGN 93


>gi|330811521|ref|YP_004355983.1| DNA-binding protein [Pseudomonas brassicacearum subsp.
          brassicacearum NFM421]
 gi|327379629|gb|AEA70979.1| putative DNA-binding protein [Pseudomonas brassicacearum subsp.
          brassicacearum NFM421]
          Length = 93

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 35/92 (38%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  L+  +++     +      +  L   + D    G  I +       V ++ +R 
Sbjct: 2  ALTKDQLIADLAESVDAPKATVRSLLDQLGQVVADQLENGGEITLPGVGKLKVTERPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN  T   ++I  ++V+    +  L   +  
Sbjct: 62 GRNPSTGAAIEIAAKKVIKLVVAKGLTDAVNK 93


>gi|228982427|ref|ZP_04142686.1| DNA-binding protein HU [Bacillus thuringiensis Bt407]
 gi|228776610|gb|EEM24918.1| DNA-binding protein HU [Bacillus thuringiensis Bt407]
          Length = 94

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ + +   LS+ ++   V T  N I ++   GE + +  F  F  K++ SR  
Sbjct: 1  MNKNELLEKMKERNRLSKSENQLAVDTFINIIYEALQNGEKVSLKGFGQFVTKERKSRNI 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          R   + +EV++  + +  F+     K ++ 
Sbjct: 61 RIPSSEKEVRVPAKEIPAFEPGEEFKNKVE 90


>gi|301166851|emb|CBW26428.1| integration host factor beta-subunit [Bacteriovorax marinus SJ]
          Length = 108

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 48/89 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++DL+ +I K+  L+ K +   +   F+ +  S    E I+I  F +F  +   +  G
Sbjct: 8  MTKADLIAAIEKQANLTHKQAESIINICFDSMIKSLYNDERIEIRGFGSFANRNYKAYEG 67

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + VK+ P++V  FK    L++ +
Sbjct: 68 RNPKTGKVVKVPPKKVPFFKVGKELREMV 96


>gi|167950382|ref|ZP_02537456.1| integration host factor, beta subunit [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 122

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 5  ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ + K +  L+ +D    +  +  ++  +   GE I+I  F +F +  +  R+
Sbjct: 1  MTKSELIEIVRKDQSHLAYRDIELAIKCMIEQMSQALSSGERIEIRGFGSFSLHYRPPRM 60

Query: 64 GRNLQTN 70
          GRN +  
Sbjct: 61 GRNPKNG 67


>gi|260222772|emb|CBA32664.1| Integration host factor subunit beta [Curvibacter putative
          symbiont of Hydra magnipapillata]
          Length = 103

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 1/96 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + RSDL+  ++  F  + +KD+   V  +F+E+ ++ V+G  I+I +F     + + S  
Sbjct: 1  MNRSDLINQLANRFNEIDKKDTELAVRLIFDEMANALVKGRRIEIRNFGILQARTRPSTT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           RN +T +++K    R + FK    L+ R+     G
Sbjct: 61 YRNPRTGEKLKRRSTRSIRFKEGKELRSRMAGGNSG 96


>gi|110347039|ref|YP_665857.1| histone-like DNA-binding protein [Mesorhizobium sp. BNC1]
 gi|110283150|gb|ABG61210.1| histone-like DNA-binding protein [Chelativorans sp. BNC1]
          Length = 92

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 1/92 (1%)

Query: 5  ITRS-DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T + ++   I+   GL++  +   V ++F EI  +A  G    I +F  F  K+  +R 
Sbjct: 1  MTSANEIADKIAGAHGLTKAQAKTIVESVFKEIAGAAAAGAETSIPAFGKFKPKKTAARE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN  T   ++I     + F  +  LK  +  
Sbjct: 61 GRNPSTGATIRIAASTKLTFTPAKALKDALNG 92


>gi|332884203|gb|EGK04471.1| hypothetical protein HMPREF9456_00798 [Dysgonomonas mossii DSM
          22836]
          Length = 445

 Score = 87.3 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 50/94 (53%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ ++  DL+  ++K+  +++K++  F+  L   I ++    E++KI  F TF + +  
Sbjct: 1  MNERLSLQDLIDLLAKKQEITKKEAEVFLRELIAVISETIESNESVKIKDFGTFKLVKVN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +R   ++ T + ++I     + F    +LK+ I 
Sbjct: 61 ARKSVDVNTGEAIEIAAHYKLSFTPDKLLKEAIN 94


>gi|254303147|ref|ZP_04970505.1| possible nucleoid DNA-binding protein [Fusobacterium nucleatum
          subsp. polymorphum ATCC 10953]
 gi|148323339|gb|EDK88589.1| possible nucleoid DNA-binding protein [Fusobacterium nucleatum
          subsp. polymorphum ATCC 10953]
          Length = 102

 Score = 87.3 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 39/69 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V + +++  L  KDS R V      + D+ ++G+ ++   F ++ VK++ +R  
Sbjct: 1  MTKKEFVNAFAEKGELKIKDSERLVNAFLETVEDALLKGDGVRFIGFGSWEVKERSAREV 60

Query: 65 RNLQTNQEV 73
          +N QT + +
Sbjct: 61 KNPQTGKMI 69


>gi|124506647|ref|XP_001351921.1| bacterial histone-like protein [Plasmodium falciparum 3D7]
 gi|23504948|emb|CAD51732.1| bacterial histone-like protein [Plasmodium falciparum 3D7]
 gi|227300960|emb|CAR57919.1| plastid histone-like protein HU precursor [Plasmodium falciparum]
          Length = 189

 Score = 87.3 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 53/103 (51%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           MS+ IT+  +++ +S E   ++K   + +  +F+ I       E I I  F  F+   + 
Sbjct: 54  MSQAITKKQIIEEVSMETKENKKTVEKIMNGIFDNIYKHLENNEKIYIHKFGMFYNIFRK 113

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
            R  +NL+T ++++I+   +  FK S + K+ I  +++ +K  
Sbjct: 114 KRCIKNLRTKEDIEIESSHMPHFKFSKVFKELIKQNVKVKKGK 156


>gi|71083197|ref|YP_265916.1| integration host factor beta-subunit (IHF-beta) [Candidatus
          Pelagibacter ubique HTCC1062]
 gi|91762373|ref|ZP_01264338.1| Integration host factor beta-subunit (IHF-beta) [Candidatus
          Pelagibacter ubique HTCC1002]
 gi|71062310|gb|AAZ21313.1| Integration host factor beta-subunit (IHF-beta) [Candidatus
          Pelagibacter ubique HTCC1062]
 gi|91718175|gb|EAS84825.1| Integration host factor beta-subunit (IHF-beta) [Candidatus
          Pelagibacter ubique HTCC1002]
          Length = 96

 Score = 87.3 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 7  RSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          +S L+K ++       +KD  +F   +  EI  +  RG+ +++  F  F    + +R+ R
Sbjct: 5  KSKLLKQLANNYPNFLKKDLEKFTDIILTEIKQALKRGDRVELRGFGMFSTNIQKARISR 64

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          N +T ++V    ++ + FK S  + K++ +D
Sbjct: 65 NPKTGEKVNTPEKKTIHFKMSKEMFKKLNND 95


>gi|313159618|gb|EFR58978.1| putative DNA-binding protein HU [Alistipes sp. HGB5]
          Length = 92

 Score = 87.3 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 41/85 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+VK +++E G+        V     E+  + +R E + +  F TF +K +  +  
Sbjct: 1  MTKADIVKQLAQETGVEAVTVLAVVEGFMEEVRAAQIRKENVFLRGFGTFLIKHRKEKTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN+  N  +KI    +  FK S   
Sbjct: 61 RNITKNTTIKIPAHDIPAFKPSPAF 85


>gi|159045828|ref|YP_001534622.1| DNA-binding protein HU [Dinoroseobacter shibae DFL 12]
 gi|157913588|gb|ABV95021.1| DNA-binding protein HU [Dinoroseobacter shibae DFL 12]
          Length = 96

 Score = 87.3 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 45/94 (47%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +K +T++ LV ++++   L +K +   +  L + +      G A+ +      + +++  
Sbjct: 3  AKPLTKTQLVAALAEGAELDKKTAAATLDALTSIVTKEVTDGGAVTLPGIGKIYCRERPE 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          R+ RN  T +++K D  +VV    +  LK  +  
Sbjct: 63 RMVRNPATGEQIKKDADKVVKVTIAKALKDSVNG 96


>gi|281419890|ref|ZP_06250889.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella copri
          DSM 18205]
 gi|281406017|gb|EFB36697.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella copri
          DSM 18205]
          Length = 96

 Score = 87.3 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 49/92 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + +  ++++ G S++D+ + V    + +      GEA+ I +F TF VK++  RV 
Sbjct: 1  MNNKEYIAELAQQTGYSQEDTQKLVRKAIDAMIAEFEDGEAVSIPNFGTFEVKKRMERVV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N  T +   + P+ V+ F+  + +K+++ + 
Sbjct: 61 VNPTTKKRQLVPPKLVLGFRPVASVKEKLKNG 92


>gi|83942118|ref|ZP_00954580.1| DNA-binding protein HU [Sulfitobacter sp. EE-36]
 gi|83953173|ref|ZP_00961895.1| DNA-binding protein HU [Sulfitobacter sp. NAS-14.1]
 gi|83842141|gb|EAP81309.1| DNA-binding protein HU [Sulfitobacter sp. NAS-14.1]
 gi|83847938|gb|EAP85813.1| DNA-binding protein HU [Sulfitobacter sp. EE-36]
          Length = 91

 Score = 87.3 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 44/91 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++ LV ++++E G  +K ++  +  +   I      G A+ +      + +++  R+ 
Sbjct: 1  MTKTQLVAALAEEMGEDKKTASAALDAVCALITKEVSGGGAVTLPGIGKIYCRERPERMV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T ++ K D  +VV    +  LK  + +
Sbjct: 61 RNPATGEQFKKDADKVVKMTIAKALKDSVNE 91


>gi|225873629|ref|YP_002755088.1| DNA-binding protein HU [Acidobacterium capsulatum ATCC 51196]
 gi|225793084|gb|ACO33174.1| DNA-binding protein HU [Acidobacterium capsulatum ATCC 51196]
          Length = 98

 Score = 87.3 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 46/94 (48%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+ T+T++ LV+ ++++  L+ K +  F+  L         +     I         ++ 
Sbjct: 1  MATTMTKTALVRHMAEKLELTNKQAAAFLDLLAETAIKETKKNGVFVIPGLGRLVKAERK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +R+GRN QT +++KI  + VV F+ +   K  I 
Sbjct: 61 ARIGRNPQTGEQIKIKAKTVVKFRVAKSAKDVIA 94


>gi|282601029|ref|ZP_05980488.2| integration host factor, beta subunit [Subdoligranulum variabile
          DSM 15176]
 gi|282570392|gb|EFB75927.1| integration host factor, beta subunit [Subdoligranulum variabile
          DSM 15176]
          Length = 91

 Score = 87.3 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 49/91 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +TRS L+  ++ + G++  +  + +  +F  I D    G+ + I+ F  F ++++ ++  
Sbjct: 1  MTRSQLITKVANDTGMTSGEVEKVMDCIFGTIGDVLKGGDKVTIAGFGRFEMRERQTKNF 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T    K++P  +  FKAS  LK+++  
Sbjct: 61 TNPKTKVTSKLEPTAIPGFKASGRLKEKVAQ 91


>gi|71894500|ref|YP_278608.1| nucleoid DNA-binding protein [Mycoplasma synoviae 53]
 gi|71851288|gb|AAZ43897.1| bacterial nucleoid DNA-binding protein [Mycoplasma synoviae 53]
          Length = 91

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++ +K++S + GL+  +  R        + +  V GE +++S+   F V  +  R  
Sbjct: 1  MTKTEFIKAVSDKTGLTVGELNRVFDGFVYVLQEQLVAGEKVQLSNLGIFDVATRAERTI 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +N  T +E  +  ++VV +K S  L   + +
Sbjct: 61 KNHFTGKEQVVAAKKVVKYKPSKYLTDVVNE 91


>gi|254486971|ref|ZP_05100176.1| DNA-binding protein HU [Roseobacter sp. GAI101]
 gi|214043840|gb|EEB84478.1| DNA-binding protein HU [Roseobacter sp. GAI101]
          Length = 91

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 43/91 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++ LV ++++E G  +K +   +  +   I      G A+ +      + +++  R+ 
Sbjct: 1  MTKTQLVAALAEEMGEDKKTAGAALDAVCALITKEVSGGGAVTLPGIGKIYCRERPERMV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T ++ K +  +VV    +  LK  + +
Sbjct: 61 RNPATGEQFKKEADKVVKMTIAKALKDSVNE 91


>gi|320334434|ref|YP_004171145.1| histone family protein DNA-binding protein [Deinococcus
           maricopensis DSM 21211]
 gi|319755723|gb|ADV67480.1| histone family protein DNA-binding protein [Deinococcus
           maricopensis DSM 21211]
          Length = 115

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 38/84 (45%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
           ++ LV  ++    L+RK S   +      I  +   G+++ +    TF V+    R G  
Sbjct: 29  KTQLVDLVTDRTSLNRKQSAEAIDAALGIIVSALRDGKSVGLPGLGTFAVRATAERTGVK 88

Query: 67  LQTNQEVKIDPRRVVVFKASSILK 90
             T++ + I   + V FK +S LK
Sbjct: 89  PGTSERITIAAGKKVGFKVASTLK 112


>gi|312959161|ref|ZP_07773680.1| DNA-binding protein HU, nu subunit [Pseudomonas fluorescens WH6]
 gi|311286931|gb|EFQ65493.1| DNA-binding protein HU, nu subunit [Pseudomonas fluorescens WH6]
          Length = 93

 Score = 86.9 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 35/92 (38%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           IT+  L+  +++     +      +  L   + D    G  I +       V ++ +R 
Sbjct: 2  AITKDQLIADLAEAVDAPKTTVRALLDQLSQVVADQLENGGEITLPGIGKLKVTERPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN  T   ++I  ++V+    +  L   +  
Sbjct: 62 GRNPSTGAAIEIAAKKVIKLVVAKGLTDAVNK 93


>gi|94967113|ref|YP_589161.1| histone-like DNA-binding protein [Candidatus Koribacter
          versatilis Ellin345]
 gi|94549163|gb|ABF39087.1| histone-like DNA-binding protein [Candidatus Koribacter
          versatilis Ellin345]
          Length = 98

 Score = 86.9 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 44/98 (44%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+  +T++ LV+ +++   +S K +  F+ +L         +     I          + 
Sbjct: 1  MASGMTKTQLVRHMAESHEISNKTAAAFLESLAEVAIKETKKNGVFVIPGLGRLVKSNRK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          +RVGRN QT + +KI  + VV F+ +   K  I    +
Sbjct: 61 ARVGRNPQTGEPIKIPAKTVVKFRVAKAAKDSIAPSKK 98


>gi|78355172|ref|YP_386621.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
 gi|78217577|gb|ABB36926.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
          Length = 95

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 5  ITRSDLVKSISKEFGL---SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +T+++ V +          ++  + +        + D   + E +++ +     V ++  
Sbjct: 2  LTKAEFVAAFKDALPEVFETKVSAEKAYDAFCQVLADGIAKNEGVRLPNVGALTVAERAE 61

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          R GRN QT Q + I  R+VV F  +  L   + 
Sbjct: 62 RQGRNPQTGQPMTIPARKVVKFSPAKSLVDGVN 94


>gi|229588591|ref|YP_002870710.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25]
 gi|269864503|ref|XP_002651596.1| DNA-binding protein HU [Enterocytozoon bieneusi H348]
 gi|220064232|gb|EED42460.1| DNA-binding protein HU [Enterocytozoon bieneusi H348]
 gi|229360457|emb|CAY47314.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25]
          Length = 93

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 35/92 (38%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           IT+  L+  +++     +      +  L   + D    G  I +       V ++ +R 
Sbjct: 2  AITKDQLIADLAEAVDAPKTTVRALLDQLSQVVADQLENGGEITLPGVGKLKVTERPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN  T   ++I  ++V+    +  L   +  
Sbjct: 62 GRNPSTGAAIEIAAKKVIKLVVAKGLTDAVNK 93


>gi|56698562|ref|YP_168938.1| DNA-binding protein HU [Ruegeria pomeroyi DSS-3]
 gi|56680299|gb|AAV96965.1| DNA-binding protein HU [Ruegeria pomeroyi DSS-3]
          Length = 91

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 39/91 (42%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++ LV +++++ G  +K ++  +  +   I      G A+ +      + +++  R  
Sbjct: 1  MTKTQLVAALAEDMGSDKKTASAALDAVCALITREVSGGGAVTLPGVGKIYCRERPERQV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN  T +       +VV    +  LK  +  
Sbjct: 61 RNPATGETFTKAADKVVKMTIAKALKDSVNG 91


>gi|317484122|ref|ZP_07943052.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
 gi|316924626|gb|EFV45782.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
          Length = 97

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 40/96 (41%), Gaps = 6/96 (6%)

Query: 5  ITRSDLVKS---ISKEFG---LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          +T+ +L++     ++      ++  D    + +L        + G  + +       +++
Sbjct: 1  MTKRELIEKALETARNSHERAMTLADMGAALDSLCEVAAAELLGGGEVSLPGLGKIKMRE 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            +R GRN +T + + I   + VVF     LK+ + 
Sbjct: 61 TAAREGRNPRTGESLHIPAGKKVVFVPGKDLKEALK 96


>gi|167836518|ref|ZP_02463401.1| histone family protein DNA-binding protein [Burkholderia
          thailandensis MSMB43]
          Length = 64

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 33 FNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
           + I  +  R EA+++  F  F   Q+ +R GRN  T +E+ I     V F A   LK  
Sbjct: 1  MDAITGAVSRDEAVQLVGFGAFSRGQRSARTGRNPTTGEEIAIAAANTVRFAAGKALKDA 60

Query: 93 IMDD 96
          +   
Sbjct: 61 VNGS 64


>gi|19704359|ref|NP_603921.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum
          ATCC 25586]
 gi|296327419|ref|ZP_06869966.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum
          ATCC 23726]
 gi|19714609|gb|AAL95220.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum
          ATCC 25586]
 gi|296155432|gb|EFG96202.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum
          ATCC 23726]
          Length = 102

 Score = 86.1 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 39/69 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V + +++  L  KDS R V      + ++ ++G+ ++   F ++ VK++ +R  
Sbjct: 1  MTKKEFVNAFAEKGELKIKDSERLVNAFLETVENALLKGDGVRFIGFGSWEVKERSAREV 60

Query: 65 RNLQTNQEV 73
          +N QT + +
Sbjct: 61 KNPQTGKMI 69


>gi|240047359|ref|YP_002960747.1| nucleoid DNA-binding protein [Mycoplasma conjunctivae HRC/581]
 gi|239984931|emb|CAT04924.1| Bacterial nucleoid DNA-binding protein [Mycoplasma conjunctivae]
          Length = 90

 Score = 86.1 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 46/90 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L++ IS +  +S+K+    +++ F E+     + + + I+SF TF    K + V 
Sbjct: 1  MNKKELIEIISAKTEMSQKNVEIILSSFFEEVAHVMKKQDKLVINSFGTFQGIYKEASVS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T  E++   + V  FK S  LK+ + 
Sbjct: 61 INPLTKSEIRTPAKTVAKFKPSKNLKEFVA 90


>gi|218261010|ref|ZP_03476021.1| hypothetical protein PRABACTJOHN_01685 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224259|gb|EEC96909.1| hypothetical protein PRABACTJOHN_01685 [Parabacteroides johnsonii
           DSM 18315]
          Length = 136

 Score = 86.1 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 44/89 (49%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           T+  L+K +++    +   + +F+ +    I +    GE + I  F       +  R GR
Sbjct: 45  TKRALIKELAQRMECTDVAAKKFLNSYIELITEKLSEGEGVSIHYFGKLVPHYQTERPGR 104

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           NL+T +E KI  R  V FKAS IL +++ 
Sbjct: 105 NLRTGEECKIRARTSVKFKASEILIQKLN 133


>gi|71483084|gb|AAZ32517.1| nucleoid DNA binding protein [uncultured euryarchaeote Alv-FOS4]
          Length = 89

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 49/83 (59%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          +++ K ++K+ GLS+K +   +     E+ +   +GE+++I+    F  + + +R  RN 
Sbjct: 5  TEISKPVAKKTGLSQKKAREVINAFLEEVLEQVNKGESVRIAGLGIFERRVQKARKVRNP 64

Query: 68 QTNQEVKIDPRRVVVFKASSILK 90
          +T + +K+  ++ +VFK S+ +K
Sbjct: 65 RTGKMMKVGEKKKLVFKPSANIK 87


>gi|332879557|ref|ZP_08447252.1| DNA-binding protein HU [Capnocytophaga sp. oral taxon 329 str.
          F0087]
 gi|332682523|gb|EGJ55425.1| DNA-binding protein HU [Capnocytophaga sp. oral taxon 329 str.
          F0087]
          Length = 90

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + +  +S+  G + KD++  +  L  E+ D       I I +  +F V++K  RV 
Sbjct: 1  MNNKEFIAELSRRLGYTVKDASSLMVALVAEMTDELEDENVIAIQNIGSFEVRKKQERVV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T Q + + P+ V+ FK S+  K+++ 
Sbjct: 61 VNPATQQRMLVPPKLVINFKPSASFKEKMQ 90


>gi|224540004|ref|ZP_03680543.1| hypothetical protein BACCELL_04916 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224518371|gb|EEF87476.1| hypothetical protein BACCELL_04916 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 471

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 43/95 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +   +L++ ++++ G+ + D+  FV   F  I +S    + +KI    TF +    
Sbjct: 1  MNEKLNIQNLIELLAEKHGMDKADAESFVKEFFQLIEESLENDKYVKIRGLGTFKLIDVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR   N+ T +  +I     V F     LK  I  
Sbjct: 61 SRESVNINTGERFEIQGHTKVSFAPEPALKDLINK 95


>gi|332884204|gb|EGK04472.1| hypothetical protein HMPREF9456_00799 [Dysgonomonas mossii DSM
          22836]
          Length = 96

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 41/91 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T  +L+ +++K    +++ ++  +    + I  +     ++ I  F  F  K+K  R+ 
Sbjct: 1  MTNQELIAALAKRLSWTQRQTSEVLEATVSIINSNLEENNSVNIQGFGLFETKKKAERIS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N  + Q   + P+  + F+    +K+ +  
Sbjct: 61 VNPVSKQRFLVPPKITLSFRPGQTIKENLKK 91


>gi|147678837|ref|YP_001213052.1| nucleoid DNA-binding protein [Pelotomaculum thermopropionicum SI]
 gi|146274934|dbj|BAF60683.1| bacterial nucleoid DNA-binding protein [Pelotomaculum
          thermopropionicum SI]
          Length = 89

 Score = 85.3 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +LV+ ++ E G+++  +   +  L + +      G  ++ +   TF    +  R  
Sbjct: 1  MRKYELVRLLAAETGVTQGQAKAVLDALPDVVLSLVQAGHPVRFAGLGTFQAVTRQPRKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RNLQT + V +  RR++ F+A    +K +
Sbjct: 61 RNLQTGEPVMVPARRMLSFRAERKYRKGV 89


>gi|256830460|ref|YP_003159188.1| histone family protein DNA-binding protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579636|gb|ACU90772.1| histone family protein DNA-binding protein [Desulfomicrobium
           baculatum DSM 4028]
          Length = 109

 Score = 85.3 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 30  TTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSIL 89
              +  I ++  +G+ I +    +F V    +R+GRN +T + + I  RR + FK    L
Sbjct: 44  KAFYAVIREALAKGQGISLPGLGSFSVMLHAARMGRNPRTGETIAIPARRRIHFKTCKGL 103

Query: 90  KKRIM 94
           ++ + 
Sbjct: 104 RELLN 108


>gi|227889959|ref|ZP_04007764.1| DNA-binding protein HU [Lactobacillus johnsonii ATCC 33200]
 gi|227849403|gb|EEJ59489.1| DNA-binding protein HU [Lactobacillus johnsonii ATCC 33200]
          Length = 64

 Score = 85.3 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 37/61 (60%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TI +++L+K +++   L++  S + +  +F+ I ++  + E +++  F +F V+ + +R 
Sbjct: 3  TINKAELIKEVAESTDLNKTQSDQAIDAVFSAIQNALAKDEKVQLIGFGSFEVRNRAARK 62

Query: 64 G 64
          G
Sbjct: 63 G 63


>gi|322437337|ref|YP_004219549.1| histone family protein DNA-binding protein [Acidobacterium sp.
          MP5ACTX9]
 gi|321165064|gb|ADW70769.1| histone family protein DNA-binding protein [Acidobacterium sp.
          MP5ACTX9]
          Length = 98

 Score = 85.3 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 47/94 (50%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +T++ LV++++++  L+ K +  F+  L         +     I         ++ 
Sbjct: 1  MAKGMTKTALVRALAEKMELTNKQTAAFLDLLAETAVKETKKNGEFTIPGIGKLVKAERK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +R+GRN QT + +KI  + VV F+ + I K  I 
Sbjct: 61 ARLGRNPQTGETIKIKAKTVVKFRVAKIAKDTIA 94


>gi|223935064|ref|ZP_03626983.1| histone family protein DNA-binding protein [bacterium Ellin514]
 gi|223896517|gb|EEF62959.1| histone family protein DNA-binding protein [bacterium Ellin514]
          Length = 96

 Score = 85.3 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 2/98 (2%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +++S L   I+++  +++K +   +  L      +A       I       +  + 
Sbjct: 1  MAKALSKSQLAAEIAEKNQITKKQAVEILDHLAELAYKNAKN--TFTIPGLGKLVLVNRK 58

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          +R+GRN  T + +KI  +RVV F+ +   K  I+   +
Sbjct: 59 ARMGRNPATGETIKIAAKRVVKFRVAKAAKDAILGVKK 96


>gi|39939049|ref|NP_950815.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
 gi|39722158|dbj|BAD04648.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
          OY-M]
          Length = 96

 Score = 85.3 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGSRV 63
          +T+ +L+K+I++    S   +  F  +  + + +S    E + +SS    F +K + +  
Sbjct: 1  MTKKELIKNIAEANKTSISKTEEFYNSFEHTLIESITSNEEVILSSKIGKFILKTRKAYT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN QT Q++KI  + VV FK S  +K ++ D
Sbjct: 61 GRNPQTGQKLKISAKTVVSFKLSQTIKDKVKD 92


>gi|209972969|ref|YP_002300416.1| TF1 [Bacillus phage SPO1]
 gi|135625|sp|P04445|TF1_BPSP1 RecName: Full=Transcription factor 1
 gi|1942238|pdb|1WTU|A Chain A, Transcription Factor 1, Nmr, Minimized Average Structure
 gi|1942239|pdb|1WTU|B Chain B, Transcription Factor 1, Nmr, Minimized Average Structure
 gi|216145|gb|AAA32599.1| transcription factor 1 [Bacillus phage SPO1]
 gi|209871289|gb|ACI91045.1| TF1 [Bacillus phage SPO1]
          Length = 99

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 46/88 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+K+I+++  L++   ++ + +      ++  +G+ ++++ F       + +R G
Sbjct: 1  MNKTELIKAIAQDTELTQVSVSKMLASFEKITTETVAKGDKVQLTGFLNIKPVARQARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
           N QT + ++I P   V  K    LKK 
Sbjct: 61 FNPQTQEALEIAPSVGVSVKPGESLKKA 88


>gi|75812751|ref|YP_320368.1| histone-like DNA-binding protein [Anabaena variabilis ATCC 29413]
 gi|75705507|gb|ABA25179.1| Histone-like DNA-binding protein [Anabaena variabilis ATCC 29413]
          Length = 80

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQ-------KGSRVGRNLQTNQEVKIDPRRVVVFK 84
          +   + ++   G+ + +  F +F  +        +  R GRN QTN+++ I   ++  F 
Sbjct: 10 ITTTVTEAVANGDKVTLVGFGSFERRDHEVCRRYRSEREGRNPQTNEKITIPATKIPAFS 69

Query: 85 ASSILKKRIM 94
          A    ++++ 
Sbjct: 70 AGKQFREKVA 79


>gi|75762605|ref|ZP_00742453.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
 gi|74489901|gb|EAO53269.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
          Length = 76

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 39/62 (62%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K + +++L+K++++   +S+K++T  V T+   I ++   GE +++  F TF V+++ +R
Sbjct: 2  KNMNKTELIKNVAQNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAAR 61

Query: 63 VG 64
            
Sbjct: 62 TA 63


>gi|315500767|ref|YP_004089568.1| histone family protein DNA-binding protein [Asticcacaulis
          excentricus CB 48]
 gi|315418779|gb|ADU15417.1| histone family protein DNA-binding protein [Asticcacaulis
          excentricus CB 48]
          Length = 90

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 38/67 (56%)

Query: 28 FVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASS 87
           V ++F  I ++AV G+ + + +F  F V+ K +R GRNL T   ++I   R +VFK   
Sbjct: 23 IVDSVFASITEAAVLGQEVNLPAFGKFQVQAKPAREGRNLSTGATIQIAASRKLVFKPGK 82

Query: 88 ILKKRIM 94
           +K R+ 
Sbjct: 83 PVKDRLN 89


>gi|153007189|ref|YP_001381514.1| histone family protein DNA-binding protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030762|gb|ABS28530.1| histone family protein DNA-binding protein [Anaeromyxobacter sp.
           Fw109-5]
          Length = 123

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 37/87 (42%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T++   +++++   LS+    +    + + +         I +       +  + +R+G
Sbjct: 29  MTQAQFFQAVAEGAQLSKAQVRQVFQAVEDVVTKKLKGEGKIPLGGLGAVKLVDRKARIG 88

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKK 91
           RN  T +++KI  R  +    +  LK 
Sbjct: 89  RNPATGEQIKIPARTAIKITPAKGLKD 115


>gi|27383423|ref|NP_774952.1| HNS-type DNA binding protein [Bradyrhizobium japonicum USDA 110]
 gi|27356598|dbj|BAC53577.1| HNS-type DNA binding protein [Bradyrhizobium japonicum USDA 110]
          Length = 92

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 38/90 (42%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T +++   I+K + L +  +   V  +F  I D+A       +  F  F VK    R GR
Sbjct: 3  TATEIADEIAKAYNLPKAQAKAIVDGVFKSIADAAASDAETNVPGFGKFKVKHTPEREGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          N  T   +KI   + + F  +  LK  +  
Sbjct: 63 NPSTGATIKIAAAKKLTFAPAKALKDVLNG 92


>gi|330995099|ref|ZP_08319016.1| DNA-binding protein HU [Paraprevotella xylaniphila YIT 11841]
 gi|329576675|gb|EGG58178.1| DNA-binding protein HU [Paraprevotella xylaniphila YIT 11841]
          Length = 90

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + +  +S+  G + KD++  +  L  E+ +       I I +  +F V++K  RV 
Sbjct: 1  MNNKEFIAELSRRLGYTVKDTSSLMVALVAEMTEELEDENVIAIQNIGSFEVRKKQERVV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T Q + + P+ V+ FK S+  K+R+ 
Sbjct: 61 VNPATQQRMLVPPKLVINFKPSTSFKERMQ 90


>gi|195953183|ref|YP_002121473.1| histone family protein DNA-binding protein [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932795|gb|ACG57495.1| histone family protein DNA-binding protein [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 99

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 45/97 (46%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +SD++K I K    S+KD    +    + I +  ++ E I++     F +K+K S++ 
Sbjct: 1   MKKSDIIKQIDKYTNYSQKDIKLVIEYFLDAIMEGLIQDERIELRRLGIFLLKKKPSKMV 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
            N +T  +  +  R +  FK    +KK +       K
Sbjct: 61  INPRTGVQTLVSERYLPYFKMGKYIKKELNKHQANAK 97


>gi|46200905|ref|ZP_00056166.2| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magnetotacticum MS-1]
          Length = 84

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 35/82 (42%)

Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQ 71
          K+I +  G +   +   V  +   I +         +  F +F   ++ +R GRN +T +
Sbjct: 3  KAIRQAAGCTVAQADAAVEAVLATIVEGVKTEGRFSLIGFGSFSKSERPARQGRNPRTGK 62

Query: 72 EVKIDPRRVVVFKASSILKKRI 93
           + I     + F  S+ LKK +
Sbjct: 63 TIDIAASTSIKFSTSAALKKSL 84


>gi|257437801|ref|ZP_05613556.1| DNA binding protein HU [Faecalibacterium prausnitzii A2-165]
 gi|257199724|gb|EEU98008.1| DNA binding protein HU [Faecalibacterium prausnitzii A2-165]
          Length = 103

 Score = 84.6 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 49/103 (47%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +TRS ++++++++ G +       +  LF++I D     E + I+ F  F ++ +  +  
Sbjct: 1   MTRSQMIETVARKTGFTEAQVETTMDALFDQIADCLRADEKVTIAGFGRFEMRPRKPKAY 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
            N +T    +++   +  FKAS   K+++       +  ++  
Sbjct: 61  TNPKTKVSSRLESTSIPGFKASGRFKQKLEAGRAAAQSVEETA 103


>gi|85057490|ref|YP_456406.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
          AYWB]
 gi|84789595|gb|ABC65327.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
          AYWB]
          Length = 96

 Score = 84.6 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGSRV 63
          +T+ +L+K I++    S   +  F  +  + + +S    E + +SS    F +K + +  
Sbjct: 1  MTKKELIKKIAEVNKTSISKTEEFYHSFEHTLIESITSNEEVILSSKIGKFILKTRKAYT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN QT +++KI  + VV FK S  +K ++ D
Sbjct: 61 GRNPQTGKKLKIPAKTVVSFKLSKTIKDKVKD 92


>gi|321311008|ref|YP_004193337.1| DNA-binding protein hu-alpha [Mycoplasma haemofelis str. Langford
          1]
 gi|319802852|emb|CBY93498.1| DNA-binding protein hu-alpha [Mycoplasma haemofelis str. Langford
          1]
          Length = 101

 Score = 84.6 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 41/94 (43%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + DL+  ISKE  LS K     + +    I +  +  + + +     F V Q+ +R G
Sbjct: 2  LNKKDLLSKISKESNLSMKQVQDVLNSYQKTILEELMASKEVVVLDLGKFKVSQRSARTG 61

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           N  T + ++I  + V     S   K  +  +++
Sbjct: 62 INPLTKKPIEIPAKDVPKLVPSRKFKGLVEGEVK 95


>gi|295101480|emb|CBK99025.1| Bacterial nucleoid DNA-binding protein [Faecalibacterium
           prausnitzii L2-6]
          Length = 102

 Score = 84.6 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 48/101 (47%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +TRS ++++++++ G +       +  LF++I D     E + I+ F  F ++ +  +  
Sbjct: 1   MTRSQMIETVARKTGFTEAQVETTMDALFDQIADCLRADEKVTIAGFGRFEMRPRKPKAY 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
            N +T    +++   +  FKAS   K+++      +   + 
Sbjct: 61  TNPKTKVSSRLESTSIPGFKASGRFKQKLESGRAAKSVEET 101


>gi|85057510|ref|YP_456426.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
          AYWB]
 gi|84789615|gb|ABC65347.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
          AYWB]
          Length = 96

 Score = 84.6 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGSRV 63
          +T+ +L+K+I++    S   +  F  +  + + +S    E + +SS    F +K + +  
Sbjct: 1  MTKKELIKNIAEANKTSISKTEEFYHSFEHTLIESITSNEEVILSSKIGKFILKTRKAYT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN QT +++KI  + +V FK S  +K ++ D
Sbjct: 61 GRNPQTGKKLKIPAKTIVTFKLSKTIKDKVKD 92


>gi|167763121|ref|ZP_02435248.1| hypothetical protein BACSTE_01490 [Bacteroides stercoris ATCC
          43183]
 gi|167699461|gb|EDS16040.1| hypothetical protein BACSTE_01490 [Bacteroides stercoris ATCC
          43183]
          Length = 376

 Score = 84.6 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 44/95 (46%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +   DL+  ++++ G+S+K++  FV   F  I ++  + + +KI     F +    
Sbjct: 1  MNEKLNIQDLIDLLAEKHGMSKKNADSFVKEFFQLIEEALEKDKYVKIKGLGAFKLIDVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR   N+ T +  +I     V F     LK  I  
Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDIINK 95


>gi|309808912|ref|ZP_07702790.1| DNA-binding protein HU-beta [Lactobacillus iners LactinV 01V1-a]
 gi|308167842|gb|EFO69982.1| DNA-binding protein HU-beta [Lactobacillus iners LactinV 01V1-a]
          Length = 47

 Score = 84.6 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 27/47 (57%)

Query: 48 ISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +  F TF V+++ +R GRN QT  E++I   +V  FK    LK+ + 
Sbjct: 1  MIGFGTFEVRERAARKGRNPQTGAEIEIPASKVPAFKPGKALKEAVK 47


>gi|29346321|ref|NP_809824.1| putative integration host factor IHF subunit alpha [Bacteroides
          thetaiotaomicron VPI-5482]
 gi|253568258|ref|ZP_04845669.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29338216|gb|AAO76018.1| putative integration host factor IHF alpha subunit [Bacteroides
          thetaiotaomicron VPI-5482]
 gi|251842331|gb|EES70411.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 487

 Score = 84.6 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 43/95 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  DL+  ++ +  +++KD+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNERLTIQDLIDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLVDVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR   N+ T +  +I     V F   + L+  I  
Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFTPDTNLRDTINK 95


>gi|295104398|emb|CBL01942.1| Bacterial nucleoid DNA-binding protein [Faecalibacterium
          prausnitzii SL3/3]
          Length = 100

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 47/94 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +TRS ++++++++ G +       +  +F++I D     E + I+ F  F ++ +  +  
Sbjct: 1  MTRSQMIETVARKTGFTEAQVETTMDAMFDQIADCLRADEKVTIAGFGRFEMRPRKPKAY 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           N +T    +++   +  FKAS   K+++    +
Sbjct: 61 TNPKTKVSSQLESTSIPGFKASGRFKQKLEAGKK 94


>gi|189912884|ref|YP_001964773.1| DNA-binding protein, IHF-related [Leptospira biflexa serovar
          Patoc strain 'Patoc 1 (Ames)']
 gi|189913209|ref|YP_001964438.1| Putative DNA-binding protein (HU-like protein) [Leptospira
          biflexa serovar Patoc strain 'Patoc 1 (Paris)']
 gi|167777560|gb|ABZ95860.1| DNA-binding protein, IHF-related [Leptospira biflexa serovar
          Patoc strain 'Patoc 1 (Ames)']
 gi|167781277|gb|ABZ99574.1| Putative DNA-binding protein (HU-like protein) [Leptospira
          biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 101

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 3/96 (3%)

Query: 1  MSKT---ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          M+ T   + +S+++  +++  G+++K+   F+ +          +  A  I        +
Sbjct: 1  MATTPTPMKKSEMLSELAETTGMTKKNVAAFLDSFVELAYKETKKNGAFVIPGLGKLVKR 60

Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           +  R GRN  T + + I  + VV F  S   K  +
Sbjct: 61 NRPKRKGRNPATGEAIVIPAKTVVKFTLSKTCKDAV 96


>gi|154492585|ref|ZP_02032211.1| hypothetical protein PARMER_02219 [Parabacteroides merdae ATCC
          43184]
 gi|154087810|gb|EDN86855.1| hypothetical protein PARMER_02219 [Parabacteroides merdae ATCC
          43184]
          Length = 94

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 44/89 (49%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          T+  L+K +++    +   + +F+ +    I +    GE + I  F       +  R GR
Sbjct: 3  TKRALIKELAQRMECTDVAAKKFLNSYIELITEKLSEGEGVSIHYFGKLVPHYQTERPGR 62

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          NL+T +E KI  R  V FKAS IL +++ 
Sbjct: 63 NLRTGEECKIRARTSVKFKASEILIQKLN 91


>gi|182676999|ref|YP_001831146.1| histone family protein DNA-binding protein [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182636629|gb|ACB97402.1| histone family protein DNA-binding protein [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 114

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 41/91 (45%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            TIT   +   ++    L +K        +   +     +G  I+IS    F VK++ SR
Sbjct: 24  PTITLKQIGADLAILHDLPKKTVESLFDDMVELVGKHLKKGSKIRISGLGIFQVKKRASR 83

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            GRN  T + +KI   + V FK +  LK+ +
Sbjct: 84  QGRNPATGEAMKIKASKTVGFKIARDLKESL 114


>gi|32266292|ref|NP_860324.1| histone-like DNA-binding protein HU (HupB) [Helicobacter
          hepaticus ATCC 51449]
 gi|32262342|gb|AAP77390.1| Histone-like DNA-binding protein HU (HupB) [Helicobacter
          hepaticus ATCC 51449]
          Length = 95

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 43/95 (45%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +++ V  + K     ++KD+ + V +  + I  +  + +++++  F  F    + ++ 
Sbjct: 1  MNKAEFVDLVKKVGEYNTKKDAEQAVNSFVDAISKALSKKQSVELVGFGKFETAIQKAKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          G+   TN+      + V  F+    LK ++    +
Sbjct: 61 GKVPGTNKTYTTKEKSVPKFRPGKGLKDQVAKAKK 95


>gi|160944593|ref|ZP_02091820.1| hypothetical protein FAEPRAM212_02106 [Faecalibacterium
          prausnitzii M21/2]
 gi|158443777|gb|EDP20781.1| hypothetical protein FAEPRAM212_02106 [Faecalibacterium
          prausnitzii M21/2]
          Length = 100

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 47/94 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +TRS ++++++++ G +       +  +F++I D     E + I+ F  F ++ +  +  
Sbjct: 1  MTRSQMIETVARKTGFTEAQVETTMDAMFDQIADCLRADEKVTIAGFGRFEMRPRKPKAY 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           N +T    +++   +  FKAS   K+++    +
Sbjct: 61 TNPKTKVSSQLESTSIPGFKASGRFKQKLEAGKK 94


>gi|224436626|ref|ZP_03657635.1| histone-like DNA-binding protein HU (HupB) [Helicobacter cinaedi
          CCUG 18818]
 gi|313143126|ref|ZP_07805319.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128157|gb|EFR45774.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 95

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 45/95 (47%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +++ V+ + K     ++KD+ + V +  + I  +  + +++++  F  F    + ++ 
Sbjct: 1  MNKAEFVELVKKVGEYDTKKDAEKAVNSFVDAISQALTKKQSVELVGFGKFETAVQKAKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          G+   TN+  K   + V  F+    LK ++    +
Sbjct: 61 GKVPGTNKTYKTSEKAVPKFRPGKGLKDQVAKAKK 95


>gi|257451811|ref|ZP_05617110.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
 gi|317058367|ref|ZP_07922852.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
 gi|313684043|gb|EFS20878.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
          Length = 94

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 5  ITRSDLVKSISKEFGL--SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +TR +  K +  + G+  S+ ++ R +  +F  I  + +      I  F    + ++  R
Sbjct: 1  MTRREFAKVLF-QHGIFSSKLEADRNIEIIFQLIEKAIIEDGFFSIRHFGKIKLVERAPR 59

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          +GRN +T +E+ ID R+ + F+ S  L +R+ ++
Sbjct: 60 MGRNPKTGEEINIDARKSIKFRPSRFLLERLWEE 93


>gi|293363573|ref|ZP_06610329.1| DNA-binding protein HU [Mycoplasma alligatoris A21JP2]
 gi|292552922|gb|EFF41676.1| DNA-binding protein HU [Mycoplasma alligatoris A21JP2]
          Length = 92

 Score = 83.8 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V  I+ + G + K+  +F       + +  +  E +++S+  TF  + K  R  
Sbjct: 1  MTKKEFVMKIANKTGYTVKEVNKFFDAFVFYLKEELIGEEKVQLSTLGTFSTQIKRKRET 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +N  T + + I  RRVV F+ S  L++ +
Sbjct: 61 KNAFTGENISIPERRVVRFRPSKYLREIV 89


>gi|326381558|ref|ZP_08203252.1| histone family protein DNA-binding protein [Gordonia
          neofelifaecis NRRL B-59395]
 gi|326199805|gb|EGD56985.1| histone family protein DNA-binding protein [Gordonia
          neofelifaecis NRRL B-59395]
          Length = 239

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 50/94 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ ++K     RK +T FV  + + I  +  +GE++ I+ F  F  +++ +RV 
Sbjct: 1  MNKAELIEELTKRLDADRKTATNFVEQVIDTIVRAVNKGESVTITGFGVFEKRRRAARVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN +T + VK+    +  F+  +  K  +    +
Sbjct: 61 RNPRTGETVKVKATSIPAFRPGAQFKAIVSGKQK 94


>gi|213609081|ref|ZP_03368907.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-2068]
          Length = 54

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 44 EAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          E I+I  F +F +  +  R GRN +T  +V+++ + V  FK    L+ R  
Sbjct: 1  ERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 51


>gi|255603677|ref|XP_002538095.1| DNA-binding protein HU, putative [Ricinus communis]
 gi|223513840|gb|EEF24287.1| DNA-binding protein HU, putative [Ricinus communis]
          Length = 101

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 44/99 (44%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + R  LV+ I+ + GL++  +   + T+   I  +  +   ++I  F TF  + + +R G
Sbjct: 1   MNRVQLVEIIADKHGLTKVVAAEILDTITQTITTTVKKNGVVQILGFGTFKQQVRVARTG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
            N    +++K+   +V  F   +  K  +      RK  
Sbjct: 61  YNPVEGKKIKLPATKVPKFVPGTKFKAAVDPKAAKRKAA 99


>gi|322433108|ref|YP_004210357.1| histone family protein DNA-binding protein [Acidobacterium sp.
           MP5ACTX9]
 gi|322433120|ref|YP_004210369.1| histone family protein DNA-binding protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321165335|gb|ADW71039.1| histone family protein DNA-binding protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321165347|gb|ADW71051.1| histone family protein DNA-binding protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 125

 Score = 83.8 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 43/93 (46%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           SKT+T++ LV  +S++  LS+K +  F   L         +     I         Q+ +
Sbjct: 30  SKTMTKAALVLLVSEKMELSKKQTAEFFDLLAATAIQETKKNGEFTIPGLGKLVKAQRAA 89

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           R+GRN QT + +KI  +  V F+ +   K  I 
Sbjct: 90  RLGRNPQTGETIKIKAKTAVKFRVAKAAKDLIA 122


>gi|329954834|ref|ZP_08295851.1| LysM domain protein [Bacteroides clarus YIT 12056]
 gi|328526938|gb|EGF53949.1| LysM domain protein [Bacteroides clarus YIT 12056]
          Length = 412

 Score = 83.8 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 44/95 (46%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +   DL+  ++++ G+S+K++  FV   F  I ++  + + +KI     F +    
Sbjct: 1  MNEKLNIQDLIDLLAEKHGMSKKNADSFVKEFFQLIEEALEKDKYVKIKGLGAFKLIDVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR   N+ T +  +I     V F     LK  I  
Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDIINK 95


>gi|212693202|ref|ZP_03301330.1| hypothetical protein BACDOR_02712 [Bacteroides dorei DSM 17855]
 gi|212664307|gb|EEB24879.1| hypothetical protein BACDOR_02712 [Bacteroides dorei DSM 17855]
          Length = 439

 Score = 83.4 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 49/95 (51%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS+ +T  D+++ ++++  +++KD+  FV  +F  I ++    + +K+    TF + +  
Sbjct: 1  MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALATEKYVKVKGLGTFKLTEVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR   N+ T + ++I     + F   S +K  I  
Sbjct: 61 SRESVNVNTGERIEIQGHTKISFTPDSSMKDLINK 95


>gi|255263938|ref|ZP_05343280.1| DNA-binding protein HU [Thalassiobium sp. R2A62]
 gi|255106273|gb|EET48947.1| DNA-binding protein HU [Thalassiobium sp. R2A62]
          Length = 95

 Score = 83.4 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 46/95 (48%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M K +T++ LV ++++E G  +K +   +  + N I      G A+ +      + +++ 
Sbjct: 1  MVKPMTKTQLVAALAEEMGADKKAAGAALDAVCNLITTEVSGGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R+ RN  T +++K D  +VV    +  LK  +  
Sbjct: 61 ERMVRNPATGEQIKKDADKVVKMTIAKALKDSVNG 95


>gi|148260981|ref|YP_001235108.1| histone family protein DNA-binding protein [Acidiphilium cryptum
          JF-5]
 gi|326404379|ref|YP_004284461.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301]
 gi|146402662|gb|ABQ31189.1| histone family protein DNA-binding protein [Acidiphilium cryptum
          JF-5]
 gi|325051241|dbj|BAJ81579.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301]
          Length = 89

 Score = 83.4 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 44/89 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          ++++ + + I     ++   + R  T L   I     +     + SF TF V++  +R G
Sbjct: 1  MSKAFIAEVIQGSAEITGVAANRAATDLMEAIVKELKKNGKFTLPSFGTFTVRKTKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T +E+K+   + V FKAS  LKK +
Sbjct: 61 VNPRTGEEIKVKAGKTVRFKASPSLKKMV 89


>gi|258648339|ref|ZP_05735808.1| putative integration host factor IHF alpha subunit [Prevotella
          tannerae ATCC 51259]
 gi|260851504|gb|EEX71373.1| putative integration host factor IHF alpha subunit [Prevotella
          tannerae ATCC 51259]
          Length = 423

 Score = 83.4 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 5  ITRS----DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          + R     ++  + ++   +S+K +  F    F+ I +       +KI  F TF V    
Sbjct: 1  MNRKLLLQEVADAFAQRANISKKKAEAFCRAFFDLIEEELTHESFVKIKGFGTFKVITVN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R   N+ T + ++ID    + F   S LK  I  
Sbjct: 61 ERESININTGERIRIDSHAKLSFVPDSQLKDLINK 95


>gi|303257412|ref|ZP_07343425.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
 gi|331001348|ref|ZP_08324972.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis
          YIT 11859]
 gi|302859769|gb|EFL82847.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
 gi|329568607|gb|EGG50409.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis
          YIT 11859]
          Length = 94

 Score = 83.4 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 49/91 (53%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  L++ I++E  +++  +TR + T+   I  S   GE + +  F TF   ++ +RV 
Sbjct: 1  MNKQQLIEIIAEENEITKDMATRTLNTMIRSIMTSVKNGEPVVLVGFGTFRQVKRKARVI 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N  T +++++ PR V  F   ++ K+ + +
Sbjct: 61 CNPHTGEKLELKPRSVPKFVPGTLFKQIVDE 91


>gi|265753596|ref|ZP_06088951.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263235310|gb|EEZ20834.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 474

 Score = 83.4 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 49/95 (51%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS+ +T  D+++ ++++  +++KD+  FV  +F  I ++    + +K+    TF + +  
Sbjct: 1  MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALATEKYVKVKGLGTFKLTEVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR   N+ T + ++I     + F   S +K  I  
Sbjct: 61 SRESVNVNTGERIEIQGHTKISFTPDSSMKDLINK 95


>gi|237709944|ref|ZP_04540425.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237725390|ref|ZP_04555871.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229436077|gb|EEO46154.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229456037|gb|EEO61758.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 474

 Score = 83.4 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 49/95 (51%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS+ +T  D+++ ++++  +++KD+  FV  +F  I ++    + +K+    TF + +  
Sbjct: 1  MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALATEKYVKVKGLGTFKLTEVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR   N+ T + ++I     + F   S +K  I  
Sbjct: 61 SRESVNVNTGERIEIQGHTKISFTPDSSMKDLINK 95


>gi|317476992|ref|ZP_07936234.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316906785|gb|EFV28497.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 389

 Score = 83.4 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 44/95 (46%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +   DL+  ++++ G+S+K++  FV   F  I ++  + + +K+     F +    
Sbjct: 1  MNEKLNIQDLIDLLAEKHGMSKKNADSFVKEFFQLIEEALEKDKYVKVKGLGAFKLIDVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR   N+ T +  +I     V F     LK  I  
Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDLINK 95


>gi|294776170|ref|ZP_06741659.1| DNA-binding protein HU [Bacteroides vulgatus PC510]
 gi|294449993|gb|EFG18504.1| DNA-binding protein HU [Bacteroides vulgatus PC510]
          Length = 476

 Score = 83.4 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 50/95 (52%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS+ +T  D+++ ++++  +++KD+  FV  +F  I ++ V  + +K+    TF + +  
Sbjct: 1  MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR   N+ T + ++I     + F   S +K  I  
Sbjct: 61 SRESVNVNTGERIEIQGHTKISFTPDSSMKDLINK 95


>gi|288819045|ref|YP_003433393.1| integration host factor beta subunit [Hydrogenobacter
          thermophilus TK-6]
 gi|288788445|dbj|BAI70192.1| integration host factor beta subunit [Hydrogenobacter
          thermophilus TK-6]
 gi|308752628|gb|ADO46111.1| histone family protein DNA-binding protein [Hydrogenobacter
          thermophilus TK-6]
          Length = 98

 Score = 83.4 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 50/95 (52%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K + +S++   ISKE+ +  + +   V  +F+ I         ++I  F  F ++++G R
Sbjct: 4  KKVKKSEIASKISKEYQIPLELAKSLVEGVFSWIVQKTAEDGRVEIRGFGVFKLRRRGGR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
            +N +T  E+ ++ R ++ FK S  L KR+ + +
Sbjct: 64 FTKNPKTGIEMYVEERYLMSFKPSKKLLKRLNEKV 98


>gi|300783623|ref|YP_003763914.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32]
 gi|299793137|gb|ADJ43512.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32]
          Length = 225

 Score = 83.4 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
            ++ L++++S+  G  +K + + V  L + I  +  +GE + I+ F  F  + + +R  R
Sbjct: 3   NKAQLIEALSERLGDDKKVAAQAVDGLVDIIIRTVNKGEKVNITGFGVFEKRARAARTAR 62

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           N +T + VK+    V  F+A +  K  I    +  K   
Sbjct: 63  NPRTGEAVKVKKTNVPAFRAGTTFKDVISGTKKLPKATP 101


>gi|258543687|ref|YP_003189120.1| histone-like DNA-binding protein HU [Acetobacter pasteurianus IFO
          3283-01]
 gi|329113852|ref|ZP_08242623.1| DNA-binding protein HU-alpha [Acetobacter pomorum DM001]
 gi|256634765|dbj|BAI00741.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-01]
 gi|256637821|dbj|BAI03790.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-03]
 gi|256640875|dbj|BAI06837.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-07]
 gi|256643930|dbj|BAI09885.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-22]
 gi|256646985|dbj|BAI12933.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-26]
 gi|256650038|dbj|BAI15979.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-32]
 gi|256653028|dbj|BAI18962.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-01-42C]
 gi|256656082|dbj|BAI22009.1| histone-like bacterial DNA-binding protein HU [Acetobacter
          pasteurianus IFO 3283-12]
 gi|326696862|gb|EGE48532.1| DNA-binding protein HU-alpha [Acetobacter pomorum DM001]
          Length = 89

 Score = 83.4 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 42/89 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          ++++ +   I      +   + +    L + I +   R     + SF TF V++  +R  
Sbjct: 1  MSKAFIAAVIQDSINCTGVAANQAANDLIDAIVEELKREGGFTLPSFGTFTVRKTKARKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T ++VK+   + V FKAS  LKK +
Sbjct: 61 LNPRTGEQVKVKAGKTVRFKASPNLKKAV 89


>gi|254882027|ref|ZP_05254737.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319640965|ref|ZP_07995673.1| integration host factor IHF alpha subunit [Bacteroides sp.
          3_1_40A]
 gi|254834820|gb|EET15129.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317387410|gb|EFV68281.1| integration host factor IHF alpha subunit [Bacteroides sp.
          3_1_40A]
          Length = 476

 Score = 83.4 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 50/95 (52%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS+ +T  D+++ ++++  +++KD+  FV  +F  I ++ V  + +K+    TF + +  
Sbjct: 1  MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR   N+ T + ++I     + F   S +K  I  
Sbjct: 61 SRESVNVNTGERIEIQGHTKISFTPDSSMKDLINK 95


>gi|167948154|ref|ZP_02535228.1| integration host factor, alpha subunit [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 104

 Score = 83.4 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 10/97 (10%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQKGSR 62
          ++T++D+ + +  E GL+++++   V   F EI  +   G  +K+S F  F    +K  R
Sbjct: 2  SLTKADMAERLFDELGLNKREAKEMVEMFFEEIRRALEEGSQVKLSGFGNFDPGVEKKQR 61

Query: 63 VGRNLQ--TNQEVK---IDPRRVVVFKASSILKKRIM 94
               +  T +  K     P  +V F+    LK R+ 
Sbjct: 62 ----PRSYTQKPEKRSRSPPAELVTFRPGQTLKARVE 94


>gi|237710577|ref|ZP_04541058.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA]
 gi|237720884|ref|ZP_04551365.1| DNA-binding protein HU [Bacteroides sp. 2_2_4]
 gi|229449719|gb|EEO55510.1| DNA-binding protein HU [Bacteroides sp. 2_2_4]
 gi|229455299|gb|EEO61020.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA]
          Length = 92

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+K +++  G++  +    +     E  D+   G  + I  F T   K    +V 
Sbjct: 1  MRKEELIKQVAESTGIAICEVRTVIEAALKETVDAVANGRTLYIRGFGTLSPKHYKRKVA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
          RN+  N+ + I       FK +   K R
Sbjct: 61 RNIHKNETIVIAEHYTPHFKPAKSFKNR 88


>gi|299135887|ref|ZP_07029071.1| histone family protein DNA-binding protein [Acidobacterium sp.
          MP5ACTX8]
 gi|298602011|gb|EFI58165.1| histone family protein DNA-binding protein [Acidobacterium sp.
          MP5ACTX8]
          Length = 98

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 46/94 (48%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K IT++ LV+ ++++  L+ K +  F+  L         +     I         ++ 
Sbjct: 1  MAKGITKTQLVRLLAEKLELTNKQTAAFLELLAETAVKETKKNGEFTIPGIGKLVKAERK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +RVGRN QT + +KI  + VV F+ + + K  I 
Sbjct: 61 ARVGRNPQTGEAIKIKAKTVVKFRVAKVAKDTIA 94


>gi|114327347|ref|YP_744504.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1]
 gi|114315521|gb|ABI61581.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1]
          Length = 100

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 43/89 (48%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           ++++ + + I     L+   + R    L   I     +     + SF TF V++  +R G
Sbjct: 12  MSKAFIAQVIQDSAELTGVAANRTANDLITAIVKEMKKNGKFTLPSFGTFTVRKTKARKG 71

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            N +T +++K+   + V FKAS  LKK +
Sbjct: 72  LNPRTGEQIKVKAGKTVRFKASPNLKKSV 100


>gi|150005791|ref|YP_001300535.1| putative integration host factor IHF alpha subunit [Bacteroides
          vulgatus ATCC 8482]
 gi|149934215|gb|ABR40913.1| putative integration host factor IHF alpha subunit [Bacteroides
          vulgatus ATCC 8482]
          Length = 476

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 50/95 (52%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS+ +T  D+++ ++++  +++KD+  FV  +F  I ++ V  + +K+    TF + +  
Sbjct: 1  MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR   N+ T + ++I     + F   S +K  I  
Sbjct: 61 SRESVNVNTGERIEIQGHTKISFTPDSSMKDLINK 95


>gi|313114932|ref|ZP_07800429.1| DNA-binding protein HU [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622754|gb|EFQ06212.1| DNA-binding protein HU [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 101

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 47/96 (48%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +TRS ++++++++ G +       +  +F++I D     E + I+ F  F ++ +  +  
Sbjct: 1   MTRSQMIETVARKTGFTEAQVETTMDAMFDQIADCLRADEKVTIAGFGRFEMRPRKPKAY 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
            N +T    +++   +  FKAS   K+++      +
Sbjct: 61  TNPKTKVSSRLESTSIPGFKASGRFKQKLEAGKAAK 96


>gi|218131130|ref|ZP_03459934.1| hypothetical protein BACEGG_02735 [Bacteroides eggerthii DSM
          20697]
 gi|217986650|gb|EEC52984.1| hypothetical protein BACEGG_02735 [Bacteroides eggerthii DSM
          20697]
          Length = 397

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 44/95 (46%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +   DL+  ++++ G+S+K++  FV   F  I ++  + + +K+     F +    
Sbjct: 1  MNEKLNIQDLIDLLAEKHGMSKKNADSFVKEFFQLIEEALEKDKYVKVKGLGAFKLIDVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR   N+ T +  +I     V F     LK  I  
Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDLINK 95


>gi|332827119|gb|EGJ99904.1| hypothetical protein HMPREF9455_03777 [Dysgonomonas gadei ATCC
          BAA-286]
          Length = 420

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 48/95 (50%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ ++  DL+  ++K+ G+++K++  F+  L   I  S    ++++I  F  F + +  
Sbjct: 1  MNERLSLQDLIDLLAKKQGIAKKEAETFLRELIAVISVSIESNDSVRIKDFGVFKLVKVN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +R   ++ T + ++I     + F     LK+ I  
Sbjct: 61 ARKSVDVNTGEAIEIPAHYKLSFTPDKSLKEAINK 95


>gi|197294495|ref|YP_001799036.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
 gi|171853822|emb|CAM11766.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
          Length = 96

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS-SFATFHVKQKGSRV 63
          +T+ +L+K+++     S   +  F  +  N + ++    E + IS     F +K + +  
Sbjct: 1  MTKKELIKNLAVMNNTSVTQTQDFYNSFENALIEAIKSNEEVIISPKIGKFILKSRKAHK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN QT +++KI  + VV FK S  LK  + +
Sbjct: 61 GRNPQTGKKLKIPAKTVVNFKLSKTLKDEVKN 92


>gi|320109312|ref|YP_004184902.1| histone family protein DNA-binding protein [Terriglobus saanensis
          SP1PR4]
 gi|319927833|gb|ADV84908.1| histone family protein DNA-binding protein [Terriglobus saanensis
          SP1PR4]
          Length = 98

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 45/94 (47%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K IT++ LV++++++  L+ K S  F   +         +     I         ++ 
Sbjct: 1  MAKGITKTALVRTLAEKLELTNKQSAAFFEAIAEIAVKETKKNGEFTIPGIGKLVKAERK 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          +R+GRN QT + +KI  + VV F+ +   K  I 
Sbjct: 61 ARLGRNPQTGETIKIKAKTVVKFRVAKAAKDAIA 94


>gi|319789020|ref|YP_004150653.1| histone family protein DNA-binding protein [Thermovibrio
          ammonificans HB-1]
 gi|317113522|gb|ADU96012.1| histone family protein DNA-binding protein [Thermovibrio
          ammonificans HB-1]
          Length = 97

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 6/92 (6%)

Query: 5  ITRSDLVK----SISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          +T+ +LV      +S++ G  + ++     V  L + I      GE +KI  F  F++K+
Sbjct: 1  MTKYELVNELRQRVSRKLGKQVRKELIETTVEELLDLIVFKVFGGEEVKIRGFGKFYLKE 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
             R  RN +T + V + PR+V  FK S  ++
Sbjct: 61 ASPRRARNPKTGEVVNVPPRKVFAFKPSKDIR 92


>gi|307721611|ref|YP_003892751.1| histone family protein DNA-binding protein [Sulfurimonas
          autotrophica DSM 16294]
 gi|306979704|gb|ADN09739.1| histone family protein DNA-binding protein [Sulfurimonas
          autotrophica DSM 16294]
          Length = 94

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + ++  V+ + +     ++ ++   +      + ++ V+GE + +  F +F    +  + 
Sbjct: 1  MNKAQFVELVQEHGNYKTKVEAENAIKAFTEAVIEALVKGEDVSLVGFGSFAAALQKGKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          G+   T++      + V  FKA   LK R+ 
Sbjct: 61 GKVPGTDKTYTTQDKMVPKFKAGKGLKDRVA 91


>gi|197294327|ref|YP_001798868.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
 gi|197294355|ref|YP_001798896.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
 gi|197294406|ref|YP_001798947.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
 gi|197294488|ref|YP_001799029.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
 gi|197294819|ref|YP_001799360.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
 gi|171853654|emb|CAM11533.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
 gi|171853682|emb|CAM11565.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
 gi|171853733|emb|CAM11656.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
 gi|171853815|emb|CAM11756.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
 gi|171854146|emb|CAM12138.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
          Length = 96

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS-SFATFHVKQKGSRV 63
          +T+ +L+K+I+     S   +  F  +  N + ++    E + IS     F +K + +  
Sbjct: 1  MTKKELIKNIAVMNNTSVTQTQDFYNSFENALIEAITSNEEVIISPKIGKFILKSRKAHK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN QT +++KI  + VV FK S  LK  + +
Sbjct: 61 GRNPQTGKKLKIPAKTVVNFKLSKTLKDEVKN 92


>gi|85057657|ref|YP_456573.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
          AYWB]
 gi|84789762|gb|ABC65494.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
          AYWB]
          Length = 96

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGSRV 63
          +T+ +L+K+I++    S   +  F  +  + + +S    E + +SS    F +K + +  
Sbjct: 1  MTKKELIKNIAEVNKTSISKTEEFYHSFEHTLIESITSNEEVILSSKIGKFILKTRKAYT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          GRN QT +++KI  + VV FK S  +K ++ D
Sbjct: 61 GRNPQTGKKLKISAKTVVSFKLSKTIKDKVKD 92


>gi|134102579|ref|YP_001108240.1| histone-like DNA binding protein [Saccharopolyspora erythraea
          NRRL 2338]
 gi|291004735|ref|ZP_06562708.1| histone-like DNA binding protein [Saccharopolyspora erythraea
          NRRL 2338]
 gi|133915202|emb|CAM05315.1| histone-like DNA binding protein [Saccharopolyspora erythraea
          NRRL 2338]
          Length = 215

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++ L++++++  G  +K +++ V  + + I     +GE + I+ F  F  + + +R  
Sbjct: 1  MNKAQLIEALAERLG-DKKTASKAVEDVVDIIVRQVNKGEKVNITGFGVFEKRARAARTA 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + VK+    V  F+A +  K+ I
Sbjct: 60 RNPRTGEAVKVKKTNVPAFRAGTQFKEVI 88


>gi|226943962|ref|YP_002799035.1| histone-like DNA-binding protein [Azotobacter vinelandii DJ]
 gi|226718889|gb|ACO78060.1| histone-like bacterial DNA-binding protein [Azotobacter
          vinelandii DJ]
          Length = 55

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 40 AVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
             G  + +  F  F VK++ +R GRN  T QE++I   RV  FKA   LK+ + 
Sbjct: 1  MKAGREVSLVGFGAFTVKERAARTGRNPSTGQELEIRAARVPGFKAGKGLKEAVN 55


>gi|254434179|ref|ZP_05047687.1| DNA-binding protein HU [Nitrosococcus oceani AFC27]
 gi|207090512|gb|EDZ67783.1| DNA-binding protein HU [Nitrosococcus oceani AFC27]
          Length = 119

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 38/78 (48%)

Query: 8   SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
            +L   I+K+ G++       +     +I      G+ +++S F  F+ K   +R  RN 
Sbjct: 33  KELAGRIAKQTGMAPDQIEEVLVAFKKQIIADLASGQEVRLSHFGKFYAKHMNAREARNP 92

Query: 68  QTNQEVKIDPRRVVVFKA 85
           +T + +++ PR  + FKA
Sbjct: 93  RTGEAIQVPPRSYLRFKA 110


>gi|86160619|ref|YP_467404.1| histone-like DNA-binding protein [Anaeromyxobacter dehalogenans
          2CP-C]
 gi|197124716|ref|YP_002136667.1| histone family protein DNA-binding protein [Anaeromyxobacter sp.
          K]
 gi|220919437|ref|YP_002494741.1| histone family protein DNA-binding protein [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|85777130|gb|ABC83967.1| Histone-like DNA-binding protein [Anaeromyxobacter dehalogenans
          2CP-C]
 gi|196174565|gb|ACG75538.1| histone family protein DNA-binding protein [Anaeromyxobacter sp.
          K]
 gi|219957291|gb|ACL67675.1| histone family protein DNA-binding protein [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 95

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 35/87 (40%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++   +++++   +S+         +   +         I +       +  + +R+G
Sbjct: 1  MTQAQFFQAVAEGSQVSKAQVRAVFEAVEEVVTKRLKAEGKIPLGGLGAVKLVDRKARIG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91
          RN  T +++KI  R  +    +  LK 
Sbjct: 61 RNPATGEQIKIPARTAIKLTPAKALKD 87


>gi|260592454|ref|ZP_05857912.1| putative integration host factor IHF alpha subunit [Prevotella
          veroralis F0319]
 gi|260535500|gb|EEX18117.1| putative integration host factor IHF alpha subunit [Prevotella
          veroralis F0319]
          Length = 376

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 1/95 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+KT+ +  +  +++K++ LS  D   FV T F  I D   +G  +KI    TF V++  
Sbjct: 1  MAKTVIQI-IASALAKQYKLSAADGATFVDTFFAIISDELKKGNQVKIKGLGTFKVQRVK 59

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R   N+ T + V I+    V F   + +K+ +  
Sbjct: 60 PRESVNVNTGERVLIEGHDKVSFTPDAAMKELVNK 94


>gi|313678363|ref|YP_004056103.1| DNA-binding protein HU [Mycoplasma bovis PG45]
 gi|312950746|gb|ADR25341.1| DNA-binding protein HU [Mycoplasma bovis PG45]
          Length = 91

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 43/90 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + +K+I+ +  +S K + +F       + +  +    +++SS   F  + +  R  
Sbjct: 1  MTKKEFIKAIANKMEVSVKKADQFFDAFVFVLKEELIAENKVQLSSLGIFETRIRRGRDT 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T  E+ +  +RV+ F  S  L++ + 
Sbjct: 61 INPFTMNELSVPEKRVIKFTPSKYLRELVN 90


>gi|294056334|ref|YP_003549992.1| histone family protein DNA-binding protein [Coraliomargarita
          akajimensis DSM 45221]
 gi|293615667|gb|ADE55822.1| histone family protein DNA-binding protein [Coraliomargarita
          akajimensis DSM 45221]
          Length = 91

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 5  ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + +++LV  + K  G   ++  + R V  +   +     + + +++  F TF V ++ +R
Sbjct: 1  MNKAELVAEVQKSLGKDTTKAAAERAVEAVLEGVKKGVKKDKNVQLIGFGTFSVTKRAAR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKK 91
           G N QT +++KI   + V FKA + LK 
Sbjct: 61 EGINPQTGEKIKIKASKAVKFKAGAGLKA 89


>gi|189465619|ref|ZP_03014404.1| hypothetical protein BACINT_01977 [Bacteroides intestinalis DSM
          17393]
 gi|189437893|gb|EDV06878.1| hypothetical protein BACINT_01977 [Bacteroides intestinalis DSM
          17393]
          Length = 433

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 43/95 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +   +L++ ++++ G+ + D+  FV   F  I +S    + +KI    TF +    
Sbjct: 1  MNEKLNIQNLIELLAEKHGMDKTDAESFVKEFFQLIEESLESDKYVKIKGLGTFKLIDVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR   N+ T +  +I     V F     LK  I  
Sbjct: 61 SRESVNINTGERFEIQGHTKVSFTPEPTLKDLINK 95


>gi|288803467|ref|ZP_06408899.1| DNA-binding protein HU-beta [Prevotella melaninogenica D18]
 gi|288334077|gb|EFC72520.1| DNA-binding protein HU-beta [Prevotella melaninogenica D18]
          Length = 91

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 32/64 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+    +S+  + + +      I ++   G+ +++  F TF   ++ +  G
Sbjct: 1  MNKTELIEKIAANAEVSKAVAKKALDATTEAIKEALAAGDKVQLVGFGTFATTERPAHEG 60

Query: 65 RNLQ 68
           N +
Sbjct: 61 INPR 64


>gi|292490832|ref|YP_003526271.1| histone family protein DNA-binding protein [Nitrosococcus
           halophilus Nc4]
 gi|291579427|gb|ADE13884.1| histone family protein DNA-binding protein [Nitrosococcus
           halophilus Nc4]
          Length = 109

 Score = 81.9 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 38/78 (48%)

Query: 8   SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
            +L   I+K+ G++       +     ++      G+ +++S F  F+ K   +R  RN 
Sbjct: 23  KELAGRIAKQTGMTPDQVEEILAAFKKQVIADLTSGQEVRLSHFGKFYAKHMDAREARNP 82

Query: 68  QTNQEVKIDPRRVVVFKA 85
           +T + +++ PR  + F+A
Sbjct: 83  RTGEIIQVPPRSYLRFRA 100


>gi|299145604|ref|ZP_07038672.1| putative integration host factor IHF alpha subunit [Bacteroides
          sp. 3_1_23]
 gi|298516095|gb|EFI39976.1| putative integration host factor IHF alpha subunit [Bacteroides
          sp. 3_1_23]
          Length = 471

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  DL   ++ +  +++KD+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR   N+ T +  +I     V F   + L+  I  
Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTINK 95


>gi|293373986|ref|ZP_06620327.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
 gi|292631062|gb|EFF49699.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
          Length = 471

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  DL   ++ +  +++KD+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR   N+ T +  +I     V F   + L+  I  
Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTINK 95


>gi|77165933|ref|YP_344458.1| histone-like DNA-binding protein [Nitrosococcus oceani ATCC 19707]
 gi|76884247|gb|ABA58928.1| Histone-like DNA-binding protein [Nitrosococcus oceani ATCC 19707]
          Length = 109

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 38/78 (48%)

Query: 8   SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
            +L   I+K+ G++       +     +I      G+ +++S F  F+ K   +R  RN 
Sbjct: 23  KELAGRIAKQTGMAPDQIEEVLVAFKKQIIADLASGQEVRLSHFGKFYAKHMNAREARNP 82

Query: 68  QTNQEVKIDPRRVVVFKA 85
           +T + +++ PR  + FKA
Sbjct: 83  RTGEAIQVPPRSYLRFKA 100


>gi|317014245|gb|ADU81681.1| DNA-binding protein HU [Helicobacter pylori Gambia94/24]
          Length = 96

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 47/95 (49%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +++ +  + +     S++++   +      +  +  +GE++++  F  F   ++  + 
Sbjct: 1  MNKAEFIDLVKEAGKYNSKREAEEAINAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          G+   +++  K + +RV  FK   ILK+++ +  R
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEGKR 95


>gi|148259522|ref|YP_001233649.1| histone family protein DNA-binding protein [Acidiphilium cryptum
          JF-5]
 gi|326402729|ref|YP_004282810.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301]
 gi|146401203|gb|ABQ29730.1| histone family protein DNA-binding protein [Acidiphilium cryptum
          JF-5]
 gi|325049590|dbj|BAJ79928.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301]
          Length = 89

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 43/89 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          ++++ +   I    G++   + R  T +   I     +     + SF TF V++  +R G
Sbjct: 1  MSKAFITDVIQNSTGITGVAANRAATDVIEAIVKELKKKGKFTLPSFGTFTVRKTKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N ++ + +K+   + V FK+S  LK R+
Sbjct: 61 VNPRSGEPIKVKAGKTVRFKSSPTLKTRV 89


>gi|237716501|ref|ZP_04546982.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262408099|ref|ZP_06084647.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645093|ref|ZP_06722819.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a]
 gi|229444148|gb|EEO49939.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262354907|gb|EEZ03999.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292639599|gb|EFF57891.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a]
          Length = 472

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  DL   ++ +  +++KD+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR   N+ T +  +I     V F   + L+  I  
Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTINK 95


>gi|307637527|gb|ADN79977.1| DNA-binding protein [Helicobacter pylori 908]
 gi|325996116|gb|ADZ51521.1| DNA-binding protein [Helicobacter pylori 2018]
 gi|325997712|gb|ADZ49920.1| DNA-binding protein HU [Helicobacter pylori 2017]
          Length = 94

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +++ +  + +     S++++   +      +  +  +GE++++  F  F   ++  + 
Sbjct: 1  MNKAEFIDLVKEAGKYNSKREAEEAINAFTLAVETALSKGESVELVGFGKFETAEQKGKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          G+   +++  K + +RV  FK   ILK+++ + 
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEES 93


>gi|298484175|ref|ZP_07002341.1| integration host factor IHF alpha subunit [Bacteroides sp. D22]
 gi|298269679|gb|EFI11274.1| integration host factor IHF alpha subunit [Bacteroides sp. D22]
          Length = 472

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  DL   ++ +  +++KD+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR   N+ T +  +I     V F   + L+  I  
Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTINK 95


>gi|294809493|ref|ZP_06768196.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b]
 gi|294443311|gb|EFG12075.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b]
          Length = 144

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  DL   ++ +  +++KD+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR   N+ T +  +I     V F   + L+  I  
Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTINK 95


>gi|317180599|dbj|BAJ58385.1| dna-binding protein hu [Helicobacter pylori F32]
          Length = 94

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +++ +  + +     S++++   ++     +  +  RGE++++  F  F   ++  + 
Sbjct: 1  MNKAEFIDLVKEAGKYNSKREAEEAISAFILAVETALSRGESVELVGFGKFETAEQKGKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          G+   +++  K + +RV  FK   ILK+++ + 
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93


>gi|68077087|ref|XP_680463.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56501398|emb|CAH98113.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 187

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 51/100 (51%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S+ +T+  +++ +S E   S+K   + +  +F+ I       E I I  F  ++   +  
Sbjct: 54  SQAVTKKQIIEEVSMETKESKKTVEKIMNGIFDNIYKHLENNEKIYIHKFGMYYNIFRKK 113

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           R  +N++T ++++I+   V  FK S I K  I  +++ +K
Sbjct: 114 RYIKNMRTKEDIEIESSHVPHFKFSKIFKDMIKVNIKAKK 153


>gi|291461216|ref|ZP_06027675.2| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693]
 gi|291378149|gb|EFE85667.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693]
          Length = 107

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 36/65 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V + +K+  L  KDS R V      + D+ ++GE ++   F ++ V+++ +R  
Sbjct: 6  MTKKEFVDAFAKKGELKIKDSERLVAAFLETVEDALLKGEGVRFIGFGSWEVRERAAREV 65

Query: 65 RNLQT 69
           N QT
Sbjct: 66 TNPQT 70


>gi|15893011|ref|NP_360725.1| integration host factor alpha-subunit [Rickettsia conorii str.
          Malish 7]
 gi|34581296|ref|ZP_00142776.1| integration host factor alpha-subunit [Rickettsia sibirica 246]
 gi|229587067|ref|YP_002845568.1| Integration host factor alpha-subunit [Rickettsia africae ESF-5]
 gi|81527945|sp|Q92GN5|HLP_RICCN RecName: Full=Histone-like DNA-binding protein
 gi|15620211|gb|AAL03626.1| integration host factor alpha-subunit [Rickettsia conorii str.
          Malish 7]
 gi|28262681|gb|EAA26185.1| integration host factor alpha-subunit [Rickettsia sibirica 246]
 gi|228022117|gb|ACP53825.1| Integration host factor alpha-subunit [Rickettsia africae ESF-5]
          Length = 95

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 1/95 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT++ +   +S + G S       V T+F+ I +   + + + + +F +F VKQK  R 
Sbjct: 2  TITKAKIAAMLSSKLGFSNNLCEEIVHTVFSNILE-IAKEQKLTLKNFGSFEVKQKNPRP 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          G N  T   V I+ ++ + F  SS LK  I +  R
Sbjct: 61 GINFHTKAPVIIESKKHLRFVPSSKLKALINESTR 95


>gi|16081263|ref|NP_393571.1| DNA-binding protein HTa [Thermoplasma acidophilum DSM 1728]
 gi|11467945|sp|P02345|DBH_THEAC RecName: Full=DNA-binding protein HTa
 gi|10639239|emb|CAC11241.1| DNA-binding protein HTa [Thermoplasma acidophilum]
          Length = 90

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 47/83 (56%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          S+L K ++K+   ++K +   + +  +EI   A  G+ I ++ F  F  + +G R  RN 
Sbjct: 5  SELSKEVAKKANTTQKVARTVIKSFLDEIVSQANGGQKINLAGFGIFERRTQGPRKARNP 64

Query: 68 QTNQEVKIDPRRVVVFKASSILK 90
          QT + +++  ++  VF+ASS +K
Sbjct: 65 QTKKVIEVPSKKKFVFRASSKIK 87


>gi|317178804|dbj|BAJ56592.1| dna-binding protein hu [Helicobacter pylori F30]
          Length = 94

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +++ +  + +     S++++   ++     +  +  +GE++++  F  F   ++  + 
Sbjct: 1  MNKAEFIDLVKEAGKYNSKREAEEAISAFTLAVQTALSKGESVELVGFGKFETAEQKGKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          G+   +++  K + +RV  FK   ILK+++ + 
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93


>gi|160882774|ref|ZP_02063777.1| hypothetical protein BACOVA_00735 [Bacteroides ovatus ATCC 8483]
 gi|156111798|gb|EDO13543.1| hypothetical protein BACOVA_00735 [Bacteroides ovatus ATCC 8483]
          Length = 471

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  DL   ++ +  +++KD+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR   N+ T +  +I     V F   + L+  I  
Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTINK 95


>gi|325300753|ref|YP_004260669.1| histone family protein DNA-binding protein [Bacteroides
          salanitronis DSM 18170]
 gi|324320306|gb|ADY38196.1| histone family protein DNA-binding protein [Bacteroides
          salanitronis DSM 18170]
          Length = 92

 Score = 81.1 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          I ++DL+K ++++     K+    +   F E+  +  R + + I  F TF  +    +  
Sbjct: 3  INKTDLIKIVAEKANQPTKEVAEIIDLFFKELSQNL-RDKDVSIKDFGTFKKRIVPPKKA 61

Query: 65 RNLQTNQEVKIDPRRVVVFKASS 87
          RN  T + + +  +  V F+ S 
Sbjct: 62 RNPATGETIYVPEKEAVKFRPSK 84


>gi|167950934|ref|ZP_02538008.1| histone family protein DNA-binding protein [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 63

 Score = 81.1 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 10/68 (14%)

Query: 32 LFNEICDSAVRGEAIKISS-----FATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKAS 86
          +   I ++   G+   ++      F     +++ +R GRN QT + ++I   +   FKA 
Sbjct: 1  MVEAITEALKSGDQ-GLAGWLWDLFG----QERAARQGRNPQTGETIQIAASKTPSFKAG 55

Query: 87 SILKKRIM 94
            LK  + 
Sbjct: 56 KALKDAVN 63


>gi|260170243|ref|ZP_05756655.1| putative integration host factor IHF alpha subunit [Bacteroides
          sp. D2]
 gi|315918606|ref|ZP_07914846.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692481|gb|EFS29316.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 470

 Score = 81.1 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  DL   ++ +  +++KD+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR   N+ T +  +I     V F   + L+  I  
Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTINK 95


>gi|237720680|ref|ZP_04551161.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449515|gb|EEO55306.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 470

 Score = 81.1 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  DL   ++ +  +++KD+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR   N+ T +  +I     V F   + L+  I  
Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTINK 95


>gi|153806287|ref|ZP_01958955.1| hypothetical protein BACCAC_00543 [Bacteroides caccae ATCC 43185]
 gi|149130964|gb|EDM22170.1| hypothetical protein BACCAC_00543 [Bacteroides caccae ATCC 43185]
          Length = 435

 Score = 81.1 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  DL   ++ +  +++KD+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNERLTIQDLTDLLAAKHSMTKKDAEVFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR   N+ T +  +I     V F   + L+  I  
Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTINK 95


>gi|300776330|ref|ZP_07086188.1| DNA-binding protein HU [Chryseobacterium gleum ATCC 35910]
 gi|300501840|gb|EFK32980.1| DNA-binding protein HU [Chryseobacterium gleum ATCC 35910]
          Length = 96

 Score = 81.1 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRV 63
          + +S+L+ +I+K+ G+++  +   + +    +  +  + +  + +  F TF V ++ +R 
Sbjct: 1  MNKSELIDAIAKDAGITKVAAKAALESFIGNVTTTLKKKDGKVSLVGFGTFSVAERAARQ 60

Query: 64 GRNLQT 69
          G N  T
Sbjct: 61 GINPAT 66


>gi|315586499|gb|ADU40880.1| DNA-binding protein HU [Helicobacter pylori 35A]
          Length = 94

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +++ +  + +     S++++   ++     +  +  +GE++++  F  F   ++  + 
Sbjct: 1  MNKAEFIDLVKEAGKYNSKREAEEAISAFILAVETALSKGESVELVGFGKFETAEQKGKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          G+   +++  K + +RV  FK   ILK+++ + 
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93


>gi|109947731|ref|YP_664959.1| histon like DNA-binding protein HU [Helicobacter acinonychis str.
          Sheeba]
 gi|109714952|emb|CAJ99960.1| histon like DNA-binding protein HU [Helicobacter acinonychis str.
          Sheeba]
          Length = 94

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +++ +  + +     S++++   +      +  +  +GE++++  F  F   ++  + 
Sbjct: 1  MNKAEFIDLVKEVGEFNSKREAEEVINAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          G+   + +  K   +RV  FKA  ILK+++   
Sbjct: 61 GKVPGSGKTYKTKDKRVPKFKAGKILKQKVEKG 93


>gi|188527318|ref|YP_001910005.1| dna-binding protein hu [Helicobacter pylori Shi470]
 gi|30060258|gb|AAP13078.1| DNA-binding protein HU [Helicobacter pylori NCTC 11637]
 gi|188143558|gb|ACD47975.1| dna-binding protein hu [Helicobacter pylori Shi470]
 gi|308062156|gb|ADO04044.1| DNA-binding protein HU [Helicobacter pylori Cuz20]
          Length = 94

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +++ +  + +     S++++   +      +  +  +GE++++  F  F   ++  + 
Sbjct: 1  MNKAEFIDLVKEAGKYNSKREAEEAINAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          G+   +++  K + +RV  FK   ILK+++ + 
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93


>gi|332673359|gb|AEE70176.1| DNA-binding protein HU [Helicobacter pylori 83]
          Length = 94

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +++ +  + +     S++++   +T     +  +  +GE++++  F  F   ++  + 
Sbjct: 1  MNKAEFIDLVKEAGKYNSKREAEEAITAFTLAVQTALSKGESVELVGFGKFETAEQKGKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          G+   +++  K + +RV  FK   ILK+++ + 
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93


>gi|134034140|sp|Q1RK52|HLP_RICBR RecName: Full=Histone-like DNA-binding protein
          Length = 94

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+  +   ++ E G S+      V  +F  I D   + + + + +F +F VK K SR 
Sbjct: 2  TITKEKIAFMLNAELGFSKSLCEEVVNAVFTNILD-IAKEQKLILKNFGSFEVKHKNSRP 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          G N  T  ++ I+P+ ++ F  S+ LK  I ++
Sbjct: 61 GINFHTKSQITIEPKNILRFVPSAKLKALINEN 93


>gi|315644375|ref|ZP_07897515.1| histone family protein DNA-binding protein [Paenibacillus vortex
          V453]
 gi|315280252|gb|EFU43544.1| histone family protein DNA-binding protein [Paenibacillus vortex
          V453]
          Length = 61

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          + ++DL+ +IS + GL++KD    +     EI D+   G+ +++  F TF
Sbjct: 1  MNKTDLINNISGKSGLTKKDVENVLNGFLGEITDALANGDKVQLIGFGTF 50


>gi|294155859|ref|YP_003560243.1| DNA-binding protein HU [Mycoplasma crocodyli MP145]
 gi|291600263|gb|ADE19759.1| DNA-binding protein HU [Mycoplasma crocodyli MP145]
          Length = 93

 Score = 80.7 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 45/89 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + +  I+   G + K+  +F  T    + +  +  E +++SS  TF  + K  R  
Sbjct: 1  MTKKEFIMKIANRTGYTVKEVNKFFDTFVFFLKEELIGEEKVQLSSLGTFSTQIKHKRHT 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          +N  T +++ I  +RVV F  S  L++ I
Sbjct: 61 KNAFTGEDLFIPEKRVVKFTPSKYLRELI 89


>gi|317182148|dbj|BAJ59932.1| dna-binding protein hu [Helicobacter pylori F57]
          Length = 94

 Score = 80.7 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +++ +  + +     S++++   ++     +  +  +GE++++  F  F   ++  + 
Sbjct: 1  MNKAEFINLVKEAGKYNSKREAEEAISAFTLAVQTALSKGESVELVGFGKFETAEQKGKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          G+   +++  K + +RV  FK   ILK+++ + 
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93


>gi|238650372|ref|YP_002916224.1| integration host factor alpha-subunit [Rickettsia peacockii str.
          Rustic]
 gi|238624470|gb|ACR47176.1| integration host factor alpha-subunit [Rickettsia peacockii str.
          Rustic]
          Length = 95

 Score = 80.7 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 1/95 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT++ +   +S + G S       V T+F+ I +   + + + + +F +F VKQK  R 
Sbjct: 2  TITKAKIAAMLSSKLGFSNNLCEAIVHTVFSNILE-IAKAQKLTLKNFGSFEVKQKNPRP 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          G N  T   V I+ ++ + F  SS LK  I +  R
Sbjct: 61 GINFHTKAPVIIESKKHLRFVPSSKLKALINESTR 95


>gi|224024934|ref|ZP_03643300.1| hypothetical protein BACCOPRO_01665 [Bacteroides coprophilus DSM
          18228]
 gi|224018170|gb|EEF76168.1| hypothetical protein BACCOPRO_01665 [Bacteroides coprophilus DSM
          18228]
          Length = 95

 Score = 80.7 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 41/92 (44%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   +    +S+  G + KD+   V +L + +         +    F TF VK+K  R+ 
Sbjct: 1  MNSKEFTGELSRRLGYTNKDAAVLVASLVDIMAQELQESNVLTFQEFGTFEVKKKMERIV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N  T Q + + P+  + FK    LK ++ ++
Sbjct: 61 VNPVTRQRLLVPPKLSLTFKPCPALKGKVKNE 92


>gi|13540991|ref|NP_110679.1| nucleoid DNA-binding protein (HB-related) [Thermoplasma volcanium
          GSS1]
 gi|14324375|dbj|BAB59303.1| DNA-binding protein HU [Thermoplasma volcanium GSS1]
          Length = 90

 Score = 80.7 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 47/83 (56%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          S+L K ++K+   ++K +   + +  +EI   A  G+ I ++ F  F  + +G R  RN 
Sbjct: 5  SELSKDVAKKANTTQKVARTVIKSFLDEIVAQANGGQKINLAGFGIFERRTQGPRKARNP 64

Query: 68 QTNQEVKIDPRRVVVFKASSILK 90
          QT + +++  ++  VF+ASS +K
Sbjct: 65 QTKKVIEVPSKKKFVFRASSKIK 87


>gi|91792857|ref|YP_562508.1| histone-like DNA-binding protein [Shewanella denitrificans OS217]
 gi|91714859|gb|ABE54785.1| histone-like DNA-binding protein [Shewanella denitrificans OS217]
          Length = 94

 Score = 80.7 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  L+ S+S++   S++ +   +  +   I  + + GE + +  F TF +  +  ++ 
Sbjct: 1  MNKQQLIASMSRQLQQSQRQTKMELEQVLASIKQALIEGEKVFLPQFGTFELSYRLPQIA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          R+ QT   ++++ + V   K S  LK  + 
Sbjct: 61 RHPQTGASIEVEGQNVPRIKFSPNLKAALN 90


>gi|48477447|ref|YP_023153.1| DNA-binding protein [Picrophilus torridus DSM 9790]
 gi|48430095|gb|AAT42960.1| DNA-binding protein [Picrophilus torridus DSM 9790]
          Length = 90

 Score = 80.7 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 45/83 (54%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          S+L K+++K+   ++K +   +     E+   A  G+ I ++ F  F  K +  R  RN 
Sbjct: 5  SELSKTVAKKTDTTQKKARDVIREFLAEVVSQADSGQKINLAGFGIFERKTQSPRTARNP 64

Query: 68 QTNQEVKIDPRRVVVFKASSILK 90
          QT  E+K+  ++  VF+ASS +K
Sbjct: 65 QTRAEIKVPAKKKFVFRASSKIK 87


>gi|317011056|gb|ADU84803.1| DNA-binding protein HU [Helicobacter pylori SouthAfrica7]
          Length = 94

 Score = 80.3 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +++ +  + +     S++++   +      +  +  +GE++++  F  F   ++  + 
Sbjct: 1  MNKAEFIDLVKEAGKYNSKREAEEAINAFTLAVETALSKGESVELIGFGKFETVEQKGKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          G+   +++  K + +RV  FKA  ILK+++ + 
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKAGKILKQKVEEG 93


>gi|88596497|ref|ZP_01099734.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88191338|gb|EAQ95310.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 84-25]
          Length = 61

 Score = 80.3 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 35/61 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D +  +++  GL++KD+T     + + I D   +G++I    F TF  +++ +R  
Sbjct: 1  MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60

Query: 65 R 65
          R
Sbjct: 61 R 61


>gi|15611841|ref|NP_223492.1| DNA-binding protein HU [Helicobacter pylori J99]
 gi|9789720|sp|Q9ZL08|DBH_HELPJ RecName: Full=DNA-binding protein HU
 gi|4155341|gb|AAD06354.1| DNA-BINDING PROTEIN HU [Helicobacter pylori J99]
          Length = 94

 Score = 80.3 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 5  ITRSDLVKSISKEFGL--SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + +++ +  + K+ G   S++++   +      +  +  +GE++++  F  F   ++  +
Sbjct: 1  MNKAEFIDLV-KKAGKYNSKREAEEAINAFTLAVETALSKGESVELVGFGKFETAEQKGK 59

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           G+   +++  K + +RV  FK   ILK+++ + 
Sbjct: 60 EGKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93


>gi|50365485|ref|YP_053910.1| histone-like DNA-binding protein [Mesoplasma florum L1]
 gi|50364041|gb|AAT76026.1| predicted histone-like DNA-binding protein [Mesoplasma florum L1]
          Length = 441

 Score = 80.3 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 1/86 (1%)

Query: 7   RSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + DL+  + +     S+K     V + F  + ++ +  E + IS+F       K ++ G 
Sbjct: 337 KKDLLIKLEETHSEFSKKSVKEVVDSAFEIMSNAIINNEEVLISNFGKLTKIHKEAKKGI 396

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKK 91
           N  T + + I     V FKA+  LK+
Sbjct: 397 NPSTGETIDIPASNTVKFKANKHLKE 422


>gi|282858820|ref|ZP_06267965.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010]
 gi|282588389|gb|EFB93549.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010]
          Length = 443

 Score = 80.3 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 42/86 (48%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          L  +I+K++ LS  D+T+FV  +F+ + +       +KI    TF V+    R   N+ T
Sbjct: 9  LAIAIAKKYKLSNVDATKFVEAIFDIVTEELKNNGQVKIKGLGTFKVQSVKPRESVNVNT 68

Query: 70 NQEVKIDPRRVVVFKASSILKKRIMD 95
           + V I+    + F   + +K+ +  
Sbjct: 69 GERVLIEGHDKISFTPDATMKELVNK 94


>gi|208434749|ref|YP_002266415.1| DNA-binding protein HU [Helicobacter pylori G27]
 gi|208432678|gb|ACI27549.1| DNA-binding protein HU [Helicobacter pylori G27]
 gi|261839347|gb|ACX99112.1| histone-like DNA-binding protein HU (hup) [Helicobacter pylori
          52]
          Length = 94

 Score = 80.3 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +++ +  + +     S++++   ++     +  +  +GE++++  F  F   ++  + 
Sbjct: 1  MNKAEFIDLVKEAGKYNSKREAEEAISAFTLAVQTALSKGESVELVGFGKFETAEQKGKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          G+   +++  K + +RV  FK   ILK+++ + 
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93


>gi|157964859|ref|YP_001499683.1| integration host factor alpha-subunit [Rickettsia massiliae MTU5]
 gi|157844635|gb|ABV85136.1| Integration host factor alpha-subunit [Rickettsia massiliae MTU5]
          Length = 119

 Score = 80.3 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           TIT+  +   +S + G S       V T+F+ I +   + + + + +F +F VKQ+  R 
Sbjct: 26  TITKKKIAAMLSSKLGFSNSLCEEIVHTVFSNILE-IAKEQKLTLKNFGSFEVKQQNPRP 84

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           G N  T   V I+ ++ + F  SS LK  I +  R
Sbjct: 85  GINFYTKAPVIIESKKHLRFVPSSKLKALINESTR 119


>gi|294782111|ref|ZP_06747437.1| DNA-binding protein HU [Fusobacterium sp. 1_1_41FAA]
 gi|294480752|gb|EFG28527.1| DNA-binding protein HU [Fusobacterium sp. 1_1_41FAA]
          Length = 102

 Score = 80.3 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 36/65 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V + +K+  L  KDS R V      + ++ ++GE ++   F ++ VK++ +R  
Sbjct: 1  MTKKEFVDAFAKKAELKLKDSERLVAAFLETVEEALLKGEGVRFIGFGSWEVKERAAREV 60

Query: 65 RNLQT 69
           N QT
Sbjct: 61 TNPQT 65


>gi|160872801|ref|ZP_02062933.1| integration host factor, beta subunit [Rickettsiella grylli]
 gi|159121600|gb|EDP46938.1| integration host factor, beta subunit [Rickettsiella grylli]
          Length = 100

 Score = 80.0 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+L+  +  +F  L      + V  L   +  +  +G  I+I  F +F +    +R 
Sbjct: 1  MLKSELINQLILKFPQLQASTVKKSVEHLIQLLEQTLHQGHRIEIRGFGSFSLHYNAARS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90
            N +T +      +  + FK    LK
Sbjct: 61 AFNPKTKEHFLAPEKYRIHFKMGKTLK 87


>gi|217032526|ref|ZP_03438017.1| hypothetical protein HPB128_180g25 [Helicobacter pylori B128]
 gi|298736540|ref|YP_003729066.1| DNA-binding protein HU-beta [Helicobacter pylori B8]
 gi|216945804|gb|EEC24427.1| hypothetical protein HPB128_180g25 [Helicobacter pylori B128]
 gi|298355730|emb|CBI66602.1| DNA-binding protein HU-beta [Helicobacter pylori B8]
          Length = 94

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +++ +  + +     S++++   ++     +  +  +GE++++  F  F   ++  + 
Sbjct: 1  MNKAEFIDLVKEAGKYNSKREAEEAISAFTLAVQTALSKGESVELIGFGKFETAEQKGKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          G+   +++  K + +RV  FK   ILK+++ + 
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93


>gi|261837934|gb|ACX97700.1| histone-like DNA-binding protein HU [Helicobacter pylori 51]
 gi|317177333|dbj|BAJ55122.1| dna-binding protein hu [Helicobacter pylori F16]
          Length = 94

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +++ +  + +     S++++   +T     +  +  +GE++++  F  F   ++  + 
Sbjct: 1  MNKAEFIDLVKEAGKYNSKREAEEAITAFTLAVQTALSKGESVELVGFGKFETAEQKGKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          G+   +++  K + +RV  FK   ILK+++ + 
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93


>gi|189501612|ref|YP_001957329.1| histone family DNA-binding protein [Candidatus Amoebophilus
          asiaticus 5a2]
 gi|189497053|gb|ACE05600.1| histone family protein DNA-binding protein [Candidatus
          Amoebophilus asiaticus 5a2]
          Length = 95

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 45/95 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + ++++V  I+ + G+++ D    V + F  +  + V G+++    F  F  K++  ++ 
Sbjct: 1  MNKAEVVTEIATKTGINKSDVQVVVESFFQVVQQAMVDGKSVHFKGFGKFFNKKRSKKIA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          RNL  N  + ID   V   K S     ++   ++ 
Sbjct: 61 RNLTDNTAMVIDEHYVPTLKISKDFVNKVKGVVKA 95


>gi|108563246|ref|YP_627562.1| DNA-binding protein HU [Helicobacter pylori HPAG1]
 gi|107837019|gb|ABF84888.1| DNA-binding protein HU [Helicobacter pylori HPAG1]
          Length = 94

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGLS-RKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +++ +  + +    S ++++   ++     +  +  +GE++++  F  F   ++  + 
Sbjct: 1  MNKAEFIDLVKEAGKYSSKREAEEAISAFTLAVETALSKGESVELVGFGKFETAEQKGKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          G+   +++  K + +RV  FK   ILK+++ + 
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93


>gi|291320508|ref|YP_003515772.1| DNA binding histone like protein HU [Mycoplasma agalactiae]
 gi|268326522|emb|CAL59247.1| DNA binding histone like protein HU [Mycoplasma agalactiae PG2]
 gi|290752843|emb|CBH40818.1| DNA binding histone like protein HU [Mycoplasma agalactiae]
          Length = 91

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 43/90 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + VK+I+ +  +S K + +F       + +  +    +++SS   F  K +  R  
Sbjct: 1  MTKKEFVKAIANKMEVSVKRADQFFDAFVFVLKEELIAESKVQLSSLGIFETKIRRGRDT 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T  E+ +  +RV+ F  S  L++ + 
Sbjct: 61 INPFTMSELSVPEKRVIKFTPSKYLRELVN 90


>gi|254780748|ref|YP_003065161.1| integration host factor, beta subunit [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040425|gb|ACT57221.1| integration host factor, beta subunit [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 100

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S L+ +I+K+   L+ +D  + V  L  E+  +   G  ++I  F +F V+++ +R+
Sbjct: 1  MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           R     + + ++ + V  F+A   LK+R+ 
Sbjct: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91


>gi|212550692|ref|YP_002309009.1| DNA-binding protein HU [Candidatus Azobacteroides
          pseudotrichonymphae genomovar. CFP2]
 gi|212548930|dbj|BAG83598.1| DNA-binding protein HU [Candidatus Azobacteroides
          pseudotrichonymphae genomovar. CFP2]
          Length = 102

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 49/94 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ ++V +I++  G+ R+     +     E+  S   GE I +  F TF  K++ ++  
Sbjct: 1  MTKKEIVVTIAENTGIDRESVLAVIEEFMREVTFSLSSGENIYLRFFGTFKAKKRAAKPA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          RN++ N  + +  R V  FK S   K +++D M+
Sbjct: 61 RNIKKNTTIFLPERYVPHFKPSDYFKNKVIDGMK 94


>gi|217034118|ref|ZP_03439538.1| hypothetical protein HP9810_868g11 [Helicobacter pylori 98-10]
 gi|216943402|gb|EEC22858.1| hypothetical protein HP9810_868g11 [Helicobacter pylori 98-10]
          Length = 94

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +++ +  + +     S++++   +T     +  +  +GE++++  F  F   ++  + 
Sbjct: 1  MNKAEFIDLVKEAGKYNSKREAEEAITAFTLAVQTALSKGESVELVGFGKFETAEQKGKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          G+   +++  K + +RV  FK   ILK+++ + 
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVGEG 93


>gi|15645454|ref|NP_207628.1| histone-like DNA-binding protein HU (hup) [Helicobacter pylori
          26695]
 gi|3913400|sp|O25506|DBH_HELPY RecName: Full=DNA-binding protein HU
 gi|2313970|gb|AAD07885.1| histone-like DNA-binding protein HU (hup) [Helicobacter pylori
          26695]
          Length = 94

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +++ +  + +     S++++   ++     +  +  +GE++++  F  F   ++  + 
Sbjct: 1  MNKAEFIDLVKEAGKYNSKREAEEAISAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          G+   +++  K + +RV  FK    LK+++ + 
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKTLKQKVEEG 93


>gi|226357785|ref|YP_002787525.1| DNA-binding protein HU [Deinococcus deserti VCD115]
 gi|226320028|gb|ACO48021.1| putative DNA-binding protein HU [Deinococcus deserti VCD115]
          Length = 166

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 34/69 (49%)

Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80
          +R  S + V      + ++   G+++ ++   T  +++  +R G    T++ ++I   + 
Sbjct: 8  TRVQSQQAVDVFLESVLEAVRTGKSVGLAGLGTLSIRETAARTGVRPGTSERIQIPAGKK 67

Query: 81 VVFKASSIL 89
          V FK ++ L
Sbjct: 68 VAFKVATTL 76


>gi|294675806|ref|YP_003576421.1| DNA-binding protein HU [Rhodobacter capsulatus SB 1003]
 gi|294474626|gb|ADE84014.1| DNA-binding protein HU-1 [Rhodobacter capsulatus SB 1003]
          Length = 95

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 40/94 (42%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSK +T++ LV ++++  G  +K +T  +  + + +      G ++ +        K + 
Sbjct: 1  MSKPMTKTQLVAALAEAMGSDKKTATAAIDAIADVVTKEVAAGGSVTLPGIGKVSCKARP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           R  RN  T + +     + V    +  LK  + 
Sbjct: 61 ERQVRNPATGETMMKPADKQVKVTIAKALKDSVN 94


>gi|207092268|ref|ZP_03240055.1| dna-binding protein hu [Helicobacter pylori HPKX_438_AG0C1]
 gi|210135035|ref|YP_002301474.1| histone-like DNA-binding protein hu [Helicobacter pylori P12]
 gi|308182995|ref|YP_003927122.1| DNA-binding protein HU [Helicobacter pylori PeCan4]
 gi|210133003|gb|ACJ07994.1| histone-like DNA-binding protein hu [Helicobacter pylori P12]
 gi|297380038|gb|ADI34925.1| DNA-binding protein HU [Helicobacter pylori v225d]
 gi|308063375|gb|ADO05262.1| DNA-binding protein HU [Helicobacter pylori Sat464]
 gi|308065180|gb|ADO07072.1| DNA-binding protein HU [Helicobacter pylori PeCan4]
 gi|317009154|gb|ADU79734.1| DNA-binding protein HU [Helicobacter pylori India7]
 gi|317012646|gb|ADU83254.1| DNA-binding protein HU [Helicobacter pylori Lithuania75]
          Length = 94

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +++ +  + +     S++++   ++     +  +  +GE++++  F  F   ++  + 
Sbjct: 1  MNKAEFIDLVKEAGKYNSKREAEEAISAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          G+   +++  K + +RV  FK   ILK+++ + 
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93


>gi|300113361|ref|YP_003759936.1| histone family protein DNA-binding protein [Nitrosococcus watsonii
           C-113]
 gi|299539298|gb|ADJ27615.1| histone family protein DNA-binding protein [Nitrosococcus watsonii
           C-113]
          Length = 109

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 36/78 (46%)

Query: 8   SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
            +L   I+ + G+        +     ++      G+ +++S F  F+ +   +R  RN 
Sbjct: 23  KELAGRIAAQTGMETDQVEVVLAAFKKQVIADLTSGQEVRLSHFGKFYARHMEAREARNP 82

Query: 68  QTNQEVKIDPRRVVVFKA 85
           +T + +++ PR  + FKA
Sbjct: 83  RTGEAIQVPPRSYLRFKA 100


>gi|302524984|ref|ZP_07277326.1| hypothetical protein SSMG_01366 [Streptomyces sp. AA4]
 gi|302433879|gb|EFL05695.1| hypothetical protein SSMG_01366 [Streptomyces sp. AA4]
          Length = 207

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 1/97 (1%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
            ++ L++++S+  G  +K +   V  L + I  +  +GE + I+ F  F  + + +R  R
Sbjct: 3   NKAQLIEALSERIG-DKKAAAEAVDGLVDIIIRTVHKGEKVTITGFGVFEKRARAARTAR 61

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           N +T + V++    V  F+A +  K  I    +  K 
Sbjct: 62  NPRTGEAVRVKKTNVPAFRAGTTFKDVISGTKKLPKA 98


>gi|254779192|ref|YP_003057297.1| Histone-like DNA-binding protein HU [Helicobacter pylori B38]
 gi|308184622|ref|YP_003928755.1| DNA-binding protein HU [Helicobacter pylori SJM180]
 gi|254001103|emb|CAX29058.1| Histone-like DNA-binding protein HU [Helicobacter pylori B38]
 gi|308060542|gb|ADO02438.1| DNA-binding protein HU [Helicobacter pylori SJM180]
          Length = 94

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGLS-RKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +++ +  + +    S ++++   ++     +  +  +GE++++  F  F   ++  + 
Sbjct: 1  MNKAEFIDLVKEAGKYSSKREAEEAISAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          G+   +++  K + +RV  FK   ILK+++ + 
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93


>gi|291569292|dbj|BAI91564.1| DNA-binding protein HU [Arthrospira platensis NIES-39]
          Length = 93

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 42/88 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +  ++LV+ ++++  L +K     +   F+ I +    G+ + +     F +K++ +R  
Sbjct: 1  MKTNELVQRVAEKAKLPKKRVRAILDLAFSAISEEIESGQPVVVRGLGKFTLKEQPARTK 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
           N +T +  ++  R VV F+     K +
Sbjct: 61 TNPETGETTEVPARTVVNFRVIKPSKDK 88


>gi|237740736|ref|ZP_04571217.1| DNA-binding protein HU [Fusobacterium sp. 2_1_31]
 gi|229422753|gb|EEO37800.1| DNA-binding protein HU [Fusobacterium sp. 2_1_31]
          Length = 102

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 36/65 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ + V + +K+  L  KDS R V      + ++ ++GE ++   F ++ VK++ +R  
Sbjct: 1  MTKKEFVDAFAKKGELKIKDSERLVAAFLETVEEALLKGEGVRFIGFGSWEVKERAAREV 60

Query: 65 RNLQT 69
           N QT
Sbjct: 61 TNPQT 65


>gi|313203645|ref|YP_004042302.1| histone family protein DNA-binding protein [Paludibacter
          propionicigenes WB4]
 gi|312442961|gb|ADQ79317.1| histone family protein DNA-binding protein [Paludibacter
          propionicigenes WB4]
          Length = 96

 Score = 79.6 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   +L+ S++ +    +      + T      +  V  + I   SF  F +++K  R+ 
Sbjct: 1  MNHKELIASMAAKLNAPKSVVADLLDTTVTTCTELLVENKTIGFQSFGNFEIRKKEERLS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           +  T     I P+ VV FK S+ILK+++ D
Sbjct: 61 VHPSTQVRTLIPPKLVVNFKQSNILKEKLKD 91


>gi|157828936|ref|YP_001495178.1| integration host factor alpha-subunit [Rickettsia rickettsii str.
          'Sheila Smith']
 gi|165933660|ref|YP_001650449.1| integration host factor subunit alpha [Rickettsia rickettsii str.
          Iowa]
 gi|75487853|sp|Q9AKF3|HLP_RICRI RecName: Full=Histone-like DNA-binding protein
 gi|13235508|emb|CAC33712.1| Integration host factor alpha-subunit [Rickettsia rickettsii]
 gi|157801417|gb|ABV76670.1| integration host factor alpha-subunit [Rickettsia rickettsii str.
          'Sheila Smith']
 gi|165908747|gb|ABY73043.1| integration host factor alpha-subunit [Rickettsia rickettsii str.
          Iowa]
          Length = 95

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 1/95 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT++ +   +S + G S       V T+F+ I +   + + + + +F +F VKQK  R 
Sbjct: 2  TITKAKIAAMLSSKLGFSNHLCEEIVHTVFSNILE-IAKAQKLTLKNFGSFEVKQKNPRP 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          G N  T   V I+ ++ + F  SS LK  I +  R
Sbjct: 61 GINFHTKALVIIESKKHLRFVPSSKLKALINESTR 95


>gi|312601041|gb|ADQ90296.1| Bacterial nucleoid DNA-binding protein [Mycoplasma hyopneumoniae
          168]
          Length = 90

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 40/90 (44%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L++ I+ +  L  K+    +   F    D   +   + I+SF TF    K +   
Sbjct: 1  MNKKELIEQIATKTNLPIKNIELVLNEFFGITADVVKKQGKLVINSFGTFQGVFKPASSS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T  ++ ++ +  V FK S +LK  I 
Sbjct: 61 FNPLTKTQITVNAKTTVRFKPSKVLKDFIA 90


>gi|296535865|ref|ZP_06898024.1| probable DNA-binding protein HU-alpha [Roseomonas cervicalis ATCC
          49957]
 gi|296263815|gb|EFH10281.1| probable DNA-binding protein HU-alpha [Roseomonas cervicalis ATCC
          49957]
          Length = 89

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 42/89 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          ++++ + + +    G +   + R    L   I     +     + SF TF V++  +R G
Sbjct: 1  MSKAFIAQVLQDSLGCTGVAANRAAGELIAAIVKDMKKQGGFTLPSFGTFTVRKTKARKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T + VKI   + V FKAS  L+K +
Sbjct: 61 MNPRTGEPVKIKAGKTVRFKASPNLRKSV 89


>gi|89052827|ref|YP_508278.1| histone-like DNA-binding protein [Jannaschia sp. CCS1]
 gi|88862376|gb|ABD53253.1| histone-like DNA-binding protein [Jannaschia sp. CCS1]
          Length = 96

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 43/94 (45%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +K +T++ LV +++ E G  +K +   +  +   I      G A+ I      + +++  
Sbjct: 3  TKPMTKTQLVAALADEMGADKKAAGAALDAVSAVITKEVANGGAVTIPGIGKVYCRERPE 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          R+ RN  T +++K D  + V    +  LK  +  
Sbjct: 63 RMVRNPATGEQIKKDADKQVKVTIAKALKDSVNG 96


>gi|330952801|gb|EGH53061.1| nucleoid protein HU beta subunit [Pseudomonas syringae Cit 7]
          Length = 51

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 46 IKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          + +  F TF V  + +R+GRN QT + ++I   +   FKA   LK+ + 
Sbjct: 3  VVLVGFGTFSVTDRPARIGRNPQTGKTLEIAAAKKPGFKAGKALKEAVN 51


>gi|307565356|ref|ZP_07627849.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
 gi|307346025|gb|EFN91369.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
          Length = 424

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 39/86 (45%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          L  +I+K+  LS  D+ +FV T+FN I D       +KI    TF ++    R   N+ T
Sbjct: 2  LATAIAKKNNLSNADAIKFVETMFNIIIDELKNSNPVKIKGLGTFKLQSVKPRESVNVNT 61

Query: 70 NQEVKIDPRRVVVFKASSILKKRIMD 95
           + V I+    + F     +K  +  
Sbjct: 62 GERVLIEGHDKISFTPDQAMKDIVNK 87


>gi|302524989|ref|ZP_07277331.1| histone family protein DNA-binding protein [Streptomyces sp. AA4]
 gi|302433884|gb|EFL05700.1| histone family protein DNA-binding protein [Streptomyces sp. AA4]
          Length = 178

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 1/97 (1%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
            ++ L++++S+  G  +K ++  V  L + I  +  +GE + I+ F  F  + + +R  R
Sbjct: 3   NKAQLIEALSERLG-DKKVASEAVDGLVDIIIRTVNKGEKVNITGFGVFEKRARAARTAR 61

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           N +T + V++    V  F+A +  K  I    +  K 
Sbjct: 62  NPRTGEAVRVKKTNVPAFRAGTTFKDVISGSKKLPKA 98


>gi|307111764|gb|EFN59998.1| hypothetical protein CHLNCDRAFT_15526 [Chlorella variabilis]
          Length = 82

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 40/80 (50%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L++++  +  LS   +   V  L + I  +  +G+ + I+ F  F  + + +R GRN
Sbjct: 3  KRELIQAVKDQAQLSGPQADAAVNALLDTIVGTVAKGQRVAITGFGVFEARTRAARRGRN 62

Query: 67 LQTNQEVKIDPRRVVVFKAS 86
           +T +E++I       F A 
Sbjct: 63 PKTGEELQIAETVAPAFSAG 82


>gi|300783634|ref|YP_003763925.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32]
 gi|299793148|gb|ADJ43523.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32]
          Length = 225

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 49/99 (49%), Gaps = 1/99 (1%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
            ++ L++++S+  G  +K +++ V  L + I  +  +GE + I+ F  F  + + +R  R
Sbjct: 3   NKAQLIEALSERLG-DKKVASQAVDGLVDIIIRTVNKGEKVNITGFGVFEKRARAARTAR 61

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           N +T + V++    V  F+A +  K  I    +  K   
Sbjct: 62  NPRTGEAVRVKKTNVPAFRAGTTFKDVISGTKKLPKATP 100


>gi|159186493|ref|NP_396041.2| DNA binding protein [Agrobacterium tumefaciens str. C58]
 gi|159141553|gb|AAK90482.2| DNA binding protein [Agrobacterium tumefaciens str. C58]
          Length = 76

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
          +++  +   V T+F  I  +A  G    I  F  F +K    R  RN  T   +K+   +
Sbjct: 1  MTKAQAKSIVETVFASITTAATSGAETSIPGFGKFKIKDTPEREARNPATGATIKVAAAK 60

Query: 80 VVVFKASSILKKRIMD 95
           + F+ +  LK  +  
Sbjct: 61 KLTFQPAKALKDVLNK 76


>gi|257076532|ref|ZP_05570893.1| DNA-binding protein [Ferroplasma acidarmanus fer1]
          Length = 90

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 44/83 (53%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          S+L K ++     ++K +   +T    E  +S   G  + ++ F  F  K++  RV RN 
Sbjct: 5  SELSKKVASTTNTTQKKTAEIITAFLKETVESVNAGNKVNLADFGIFERKEQKERVARNP 64

Query: 68 QTNQEVKIDPRRVVVFKASSILK 90
          +T +E+K+  +   VF+ASS +K
Sbjct: 65 KTREEIKVPAKDKFVFRASSAIK 87


>gi|85715380|ref|ZP_01046362.1| histone-like DNA-binding protein [Nitrobacter sp. Nb-311A]
 gi|85697801|gb|EAQ35676.1| histone-like DNA-binding protein [Nitrobacter sp. Nb-311A]
          Length = 116

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 6/99 (6%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK- 59
           M+  +T+S LV+ IS + GLS+ D    +  L         +     +  FA F V +K 
Sbjct: 18  MATQMTKSQLVEKISAQAGLSKTDVKGVLEALATTGYKELKKTGVFLLPGFAKFVVIKKP 77

Query: 60  --GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
              +R G N  T + +       R+VV  +     K  +
Sbjct: 78  ATKARKGTNPFTGEPMTFKAKPARKVVRARPVKAAKDAV 116


>gi|39938999|ref|NP_950765.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
 gi|39722108|dbj|BAD04598.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
          OY-M]
          Length = 96

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGSRV 63
          + + +L+K I++    S   +  F  +  N +  + +  E + +SS    F +K + + +
Sbjct: 1  MNKKELIKKIAEVNKTSISKTEEFYNSFENTLIKAIISNEEVSLSSKIGKFKLKPRKAYI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T +++KI  + VV FK S  +K +
Sbjct: 61 GRNPKTKKKLKIPAKTVVTFKLSKTIKDQ 89


>gi|296114622|ref|ZP_06833275.1| histone family protein DNA-binding protein [Gluconacetobacter
          hansenii ATCC 23769]
 gi|295978978|gb|EFG85703.1| histone family protein DNA-binding protein [Gluconacetobacter
          hansenii ATCC 23769]
          Length = 89

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 40/89 (44%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          ++++ +   I      +   + +  + L   I     R     + SF TF VK+  +R  
Sbjct: 1  MSKAFIAAVIQDSIDCTGVAANQAASDLMEAIIKELKREGGFTLPSFGTFTVKKTKARKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T + VK+   + V FKAS  LKK +
Sbjct: 61 LNPRTGEPVKVKAGKTVRFKASPNLKKAV 89


>gi|187735356|ref|YP_001877468.1| histone family protein DNA-binding protein [Akkermansia
          muciniphila ATCC BAA-835]
 gi|187425408|gb|ACD04687.1| histone family protein DNA-binding protein [Akkermansia
          muciniphila ATCC BAA-835]
          Length = 90

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 5  ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + ++  ++ + +E G  ++ + +   +  +   I  +  R   +K   F TF VK++ +R
Sbjct: 1  MNKTQFIRELQRELGNDVTSRQAEHALNAVLETIARAVRRRSLVKFRGFGTFRVKRRRAR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSIL 89
          + R+ +    + +   + + F+ SS+L
Sbjct: 61 IVRHPENGGRLLVHESKTMKFRPSSLL 87


>gi|258648340|ref|ZP_05735809.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella
          tannerae ATCC 51259]
 gi|260851505|gb|EEX71374.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella
          tannerae ATCC 51259]
          Length = 90

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 43/90 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   + +  ++       K++ R  +       +S   G+++ I SF TF VK+K  R+ 
Sbjct: 1  MNNKEFIADLATRLDEKAKETQRLASIFSTVFAESLEEGDSLSIQSFGTFEVKKKLERIV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N    Q + + P+  + FK S+ILK +I 
Sbjct: 61 TNPTNKQRMLVPPKLALSFKPSNILKDKIK 90


>gi|4091109|gb|AAC98965.1| unknown [Mycoplasma hyopneumoniae]
          Length = 96

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 41/90 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L++ I+ +  L  K+    +   F    D   +   + I+SF TF    K +   
Sbjct: 7  MNKKELIEQIAIKTNLPIKNIELVLNEFFGITADVVKKQGKLVINSFGTFQGVFKPASSS 66

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T  +++++ +  V FK S +LK  I 
Sbjct: 67 FNPLTKTQIQVNAKTTVRFKPSKVLKDFIA 96


>gi|150009221|ref|YP_001303964.1| putative histone-like protein [Parabacteroides distasonis ATCC
          8503]
 gi|149937645|gb|ABR44342.1| putative histone-like protein [Parabacteroides distasonis ATCC
          8503]
          Length = 91

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 45/91 (49%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L++ +SK  G  + +    +  L N I +    GE + I  F  +  + + SR+ 
Sbjct: 1  MNKSQLIEELSKRVGNDKAEIRYILEELNNIILEKTRAGEKVCIQGFGVYTPRLQTSRLA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN ++ + + + PR +V FK +  L K I  
Sbjct: 61 RNPKSGETLMLIPRTIVHFKCAPNLLKEINK 91


>gi|39938529|ref|NP_950295.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
 gi|39938880|ref|NP_950646.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
 gi|39721638|dbj|BAD04128.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
          OY-M]
 gi|39721989|dbj|BAD04479.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
          OY-M]
          Length = 96

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGSRV 63
          +T+ +L+K I++    S   +  F  +  N +  + +  E + +SS    F +K + +  
Sbjct: 1  MTKKELIKKIAEVNKTSISKTEEFYNSFENTLIKAIISNEEVSLSSKIGKFKLKSRKAYT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T +++KI  + VV FK S  +K +
Sbjct: 61 GRNPKTRKKLKIPAKTVVTFKLSKTIKDQ 89


>gi|189485144|ref|YP_001956085.1| integration host factor alpha subunit [uncultured Termite group 1
          bacterium phylotype Rs-D17]
 gi|170287103|dbj|BAG13624.1| integration host factor alpha subunit [uncultured Termite group 1
          bacterium phylotype Rs-D17]
          Length = 86

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T++D+  ++S+    S+K++   V  +F E+ +S   G+ + I+ F +F++ +  ++  
Sbjct: 1  MTKNDIAIALSRILS-SKKEAEEAVNKVFEEMSNSLKNGDKVIITGFGSFNMFETKTKRV 59

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          RN +T +++ I P + + FK S   
Sbjct: 60 RNPRTCEKLLIAPMKKIRFKQSKKF 84


>gi|167041244|gb|ABZ06000.1| putative bacterial DNA-binding protein [uncultured marine
           microorganism HF4000_005D21]
 gi|167045748|gb|ABZ10394.1| putative bacterial DNA-binding protein [uncultured marine bacterium
           HF4000_APKG3108]
          Length = 103

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 54/102 (52%), Gaps = 1/102 (0%)

Query: 5   ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + +S+L++ +      + RKD  + +  +  EI ++  R EA++I  F  F    + +R+
Sbjct: 1   MVKSELMQQLCNIHPNILRKDIEKILDIIIFEIIEALYRNEAVEIRGFGRFKTVIRKARI 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105
           GRN + +  ++I  ++ + +K S IL KR+  +    K + +
Sbjct: 61  GRNPKNSTAIQIPAKKAIKWKMSKILFKRLNKNFTENKISTN 102


>gi|23007144|ref|ZP_00049143.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 74

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 32/62 (51%)

Query: 43  GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           G+ +++  F  F VK++ +R GRN +T + V +  + + VFK    ++ R+     G + 
Sbjct: 12  GDRVELRGFGAFSVKRREARRGRNPRTGESVSVSEKAIPVFKTGKEMRLRLNRAGIGDEQ 71

Query: 103 NK 104
             
Sbjct: 72  PS 73


>gi|256829419|ref|YP_003158147.1| histone family protein DNA-binding protein [Desulfomicrobium
          baculatum DSM 4028]
 gi|256578595|gb|ACU89731.1| histone family protein DNA-binding protein [Desulfomicrobium
          baculatum DSM 4028]
          Length = 101

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 8/87 (9%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          ++DL+  +  E G S +++ R V  +   I +S  +G+ I +    T  V ++  R G +
Sbjct: 12 KADLIARLKAEMGYSEEEAERVVDAMMESITESLSKGDKINLPGIGTMAVVERSLRKGED 71

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93
            T +++         F     LK  +
Sbjct: 72 HSTGRDI--------KFSPGKRLKDAL 90


>gi|268316438|ref|YP_003290157.1| histone family protein DNA-binding protein [Rhodothermus marinus
          DSM 4252]
 gi|262333972|gb|ACY47769.1| histone family protein DNA-binding protein [Rhodothermus marinus
          DSM 4252]
          Length = 131

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE---AIKISSFATFHVKQK 59
           T+T+ D+ + +++  G     S  +V  +   +       +    I++  F  F VK+ 
Sbjct: 6  PTLTKKDVARRVAQLMGEPIYKSEPWVNAVIEALAQLLEEADPEVRIELRDFGVFEVKRT 65

Query: 60 GSRV-GRNLQTNQEVKIDPRRVVVFKASSILKK 91
           ++   RN +TN+ V I  RR   FK S  LK+
Sbjct: 66 RAKPKARNPKTNETVFIPSRRKTHFKPSKRLKQ 98


>gi|54020025|ref|YP_115591.1| nucleoid DNA-binding protein [Mycoplasma hyopneumoniae 232]
 gi|71893426|ref|YP_278872.1| nucleoid DNA-binding protein [Mycoplasma hyopneumoniae J]
 gi|72080413|ref|YP_287471.1| nucleoid DNA-binding protein [Mycoplasma hyopneumoniae 7448]
 gi|53987198|gb|AAV27399.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
 gi|71851553|gb|AAZ44161.1| bacterial nucleoid DNA-binding protein [Mycoplasma hyopneumoniae
          J]
 gi|71913537|gb|AAZ53448.1| bacterial nucleoid DNA-binding protein [Mycoplasma hyopneumoniae
          7448]
          Length = 96

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 40/90 (44%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L++ I+ +  L  K+    +   F    D   +   + I+SF TF    K +   
Sbjct: 7  MNKKELIEQIAIKTNLPIKNIELVLNEFFGITADVVKKQGKLVINSFGTFQGVFKPASSS 66

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T  ++ ++ +  V FK S +LK  I 
Sbjct: 67 FNPLTKTQITVNAKTTVRFKPSKVLKDFIA 96


>gi|39938888|ref|NP_950654.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
 gi|39721997|dbj|BAD04487.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
          OY-M]
          Length = 96

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS-SFATFHVKQKGSRV 63
          +T+ +L+K I++    S   +  F       + ++    E + +S     F +K + + +
Sbjct: 1  MTKKELIKKIAEVNKTSISKTEEFYNIFEKTLIEAITTNEEVVLSPQIGKFKLKSRKAYI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          GRN +T +++KI  + VV FK S  +K ++ 
Sbjct: 61 GRNPKTKKKLKIPAKTVVTFKLSKNIKDQVK 91


>gi|218666551|ref|YP_002426854.1| DNA-binding protein HU family protein [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218518764|gb|ACK79350.1| DNA-binding protein HU family protein [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 192

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 34/70 (48%)

Query: 25  STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84
           + RF+      I       E I I    T H   + +R GRNL T ++++I  RRVV FK
Sbjct: 122 AARFLEAFARTIRAEMHSAEKILIPEVDTLHFTNRSARKGRNLATGEKIQIPARRVVTFK 181

Query: 85  ASSILKKRIM 94
           A+   + R+ 
Sbjct: 182 ATKTFQDRVN 191


>gi|255015828|ref|ZP_05287954.1| putative histone-like protein [Bacteroides sp. 2_1_7]
 gi|256841777|ref|ZP_05547283.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
 gi|298376992|ref|ZP_06986946.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
 gi|256736671|gb|EEU49999.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
 gi|298265976|gb|EFI07635.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
          Length = 91

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L++ +SK  G  +++    +  L N I +    GE + I  F  +  + + SR+ 
Sbjct: 1  MNKSQLIEELSKRVGNDKEEIRYILEELNNIILEKTRAGEKVCIQGFGVYTPRLQTSRLA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN ++ + + + PR +V FK +  L K I  
Sbjct: 61 RNPKSGETLMLIPRTIVHFKCAPNLLKEINK 91


>gi|75487893|sp|Q9AKK7|HLP_RICMO RecName: Full=Histone-like DNA-binding protein
 gi|13235521|emb|CAC33647.1| Integration host factor alpha-subunit [Rickettsia montanensis]
          Length = 95

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+  +   +S + G S       V T+F+ I +   + + + + +F +F VKQK  R 
Sbjct: 2  TITKEKIAAMLSSKLGFSNNLCEEIVHTVFSNILE-IAKEQKLTLKNFGSFEVKQKNPRP 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          G N  T   V I+ ++ + F  SS LK  I    R
Sbjct: 61 GINFHTKAPVIIESKKNLRFVPSSKLKALINGSTR 95


>gi|255013881|ref|ZP_05286007.1| putative DNA-binding protein HU [Bacteroides sp. 2_1_7]
 gi|256839777|ref|ZP_05545286.1| integration host factor, beta subunit [Parabacteroides sp. D13]
 gi|262381911|ref|ZP_06075049.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298375536|ref|ZP_06985493.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
 gi|256738707|gb|EEU52032.1| integration host factor, beta subunit [Parabacteroides sp. D13]
 gi|262297088|gb|EEY85018.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298268036|gb|EFI09692.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
          Length = 100

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 43/95 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M   +   +L+  ++     + K+ +  ++ L + +    V  + I +  F  F VK+K 
Sbjct: 1  MELDMKNKELITELANRMDWTSKEVSDMLSALSSVVSSKLVDNDTIYLQGFGQFEVKKKA 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R+  N    +   + P+ V VFK  + +K R+ +
Sbjct: 61 ERISVNPANGKRYLVPPKLVPVFKPGTTVKNRLKE 95


>gi|190571020|ref|YP_001975378.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
          quinquefasciatus Pel]
 gi|213019541|ref|ZP_03335347.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
          quinquefasciatus JHB]
 gi|190357292|emb|CAQ54720.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
          quinquefasciatus Pel]
 gi|212994963|gb|EEB55605.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
          quinquefasciatus JHB]
          Length = 103

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 5  ITRSDLVKS-----ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          +++ D++       +S+   +++ D +         I D   R   I++    TF     
Sbjct: 1  MSKEDIINRLKQDCVSQNIDITKSDLSNVHDMFMEMIKDQLSRKGEIRLHGIGTFSTVIN 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSIL 89
            R  RN Q  + + +  +  V FK S  L
Sbjct: 61 KERKCRNPQNGEIMTVPEKTRVKFKISQTL 90


>gi|162148370|ref|YP_001602831.1| DNA-binding protein HU-beta [Gluconacetobacter diazotrophicus PAl
          5]
 gi|209542995|ref|YP_002275224.1| histone family protein DNA-binding protein [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|161786947|emb|CAP56531.1| putative DNA-binding protein HU-beta [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209530672|gb|ACI50609.1| histone family protein DNA-binding protein [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 89

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          ++++ +   +      +   + +    L   I  +        + SF TF V +  +R  
Sbjct: 1  MSKAFIAAVLQDSLACTGVAAGKAADDLITAIVATLQEEGGFTLPSFGTFTVHKTKARKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T + VK+   + V FKAS  LKK +
Sbjct: 61 LNPRTGEPVKVKAGKTVRFKASPNLKKAV 89


>gi|262384108|ref|ZP_06077244.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|301311014|ref|ZP_07216943.1| DNA-binding protein HU [Bacteroides sp. 20_3]
 gi|262295006|gb|EEY82938.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|300831077|gb|EFK61718.1| DNA-binding protein HU [Bacteroides sp. 20_3]
          Length = 91

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +S L++ +SK  G  +++    +  L N I +    GE + I  F  +  + + SR+ 
Sbjct: 1  MNKSQLIEELSKRVGNDKEEIRYILEELNNIILEKTRAGEKVCIQGFGVYTPRLQTSRLA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          RN ++ + + + PR +V FK +  L K I  
Sbjct: 61 RNPKSGETLMLIPRTIVHFKCAPNLVKEINK 91


>gi|198274637|ref|ZP_03207169.1| hypothetical protein BACPLE_00789 [Bacteroides plebeius DSM
          17135]
 gi|198272084|gb|EDY96353.1| hypothetical protein BACPLE_00789 [Bacteroides plebeius DSM
          17135]
          Length = 96

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 43/91 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T  + ++ +S+    + K++   + +    +  S    + + +  F +F V++K   + 
Sbjct: 1  MTNKEFIEELSRRLEKTEKETASLLASFTECVSQSLQENKTVVLQDFGSFEVEKKMEYIS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N  T Q   + P   V FK+++ LK R+ +
Sbjct: 61 VNPVTKQRFLVPPELAVSFKSATSLKGRVKN 91


>gi|291612681|ref|YP_003522838.1| histone family protein DNA-binding protein [Sideroxydans
          lithotrophicus ES-1]
 gi|291582793|gb|ADE10451.1| histone family protein DNA-binding protein [Sideroxydans
          lithotrophicus ES-1]
          Length = 93

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 26/74 (35%)

Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80
          S+      +  L          G  + +       VK+  +R GRN  T  E+ I  +  
Sbjct: 20 SKTTVKAVLDELAKVASAELKAGNEVTLPGLGKLTVKKSAARKGRNPATGAEMDIPAKTK 79

Query: 81 VVFKASSILKKRIM 94
            F A+  LK  + 
Sbjct: 80 PHFSAAKALKDAVA 93


>gi|300783647|ref|YP_003763938.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32]
 gi|299793161|gb|ADJ43536.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32]
          Length = 261

 Score = 77.3 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 48/99 (48%), Gaps = 1/99 (1%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
            ++ L++++++  G  +K ++  V  L + I  +  +GE + I+ F  F  + + +R  R
Sbjct: 3   NKAQLIEALTERLG-DKKAASEAVDGLVDIIIRTVNKGEKVNITGFGVFEKRARAARTAR 61

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           N +T + V++    V  F+A +  K  I    +  K   
Sbjct: 62  NPRTGEAVRVKKTNVPAFRAGTTFKDVISGAKKLPKATP 100


>gi|330993012|ref|ZP_08316950.1| DNA-binding protein HU-alpha [Gluconacetobacter sp. SXCC-1]
 gi|329759782|gb|EGG76288.1| DNA-binding protein HU-alpha [Gluconacetobacter sp. SXCC-1]
          Length = 89

 Score = 77.3 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 39/89 (43%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          ++++ +   I      +   + +    L   I     R     + SF TF VK+  +R  
Sbjct: 1  MSKAFIAAVIQDSIDCTGVAANQAAADLIQAIVKELKREGGFTLPSFGTFTVKKTKARQA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T + VK+   + V FKAS  LKK +
Sbjct: 61 LNPRTGEPVKVKAGKTVRFKASPNLKKAV 89


>gi|302346019|ref|YP_003814372.1| DNA-binding protein HU [Prevotella melaninogenica ATCC 25845]
 gi|302150112|gb|ADK96374.1| DNA-binding protein HU [Prevotella melaninogenica ATCC 25845]
          Length = 91

 Score = 77.3 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 32/64 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L++ I+    +S+  + + +      I ++   G+ +++  F TF   ++ +  G
Sbjct: 1  MNKTELIEKIAANAEVSKAAAKKALDATTEAIKEALAAGDKVQLVGFGTFATTERPAHEG 60

Query: 65 RNLQ 68
           N +
Sbjct: 61 INPR 64


>gi|207108675|ref|ZP_03242837.1| dna-binding protein hu [Helicobacter pylori HPKX_438_CA4C1]
          Length = 89

 Score = 77.3 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +++ +  + +     S++++   ++     +  +  +GE++++  F  F   ++  + 
Sbjct: 1  MNKAEFIDLVKEAGKYNSKREAEEAISAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          G+   +++  K + +RV  FK   ILK++
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQK 89


>gi|254457259|ref|ZP_05070687.1| DNA-binding protein HU [Campylobacterales bacterium GD 1]
 gi|207086051|gb|EDZ63335.1| DNA-binding protein HU [Campylobacterales bacterium GD 1]
          Length = 94

 Score = 77.3 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + ++  V+ +    G  ++ ++   +      +  + V+ E + +  F +F    +  + 
Sbjct: 1  MNKAQFVELVQANGGYKTKVEAELAIKAFTEAVTAALVKKEDVSLVGFGSFAANLQKGKS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          G+   T++      + V  FKA   LK R+ 
Sbjct: 61 GKVPGTDKTYTTQDKMVPKFKAGKGLKDRVA 91


>gi|221054358|ref|XP_002258318.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|193808387|emb|CAQ39090.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 188

 Score = 77.3 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 50/100 (50%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S+ IT+  +++ +S E   S+K   + +  +F+ I       E I I  F  ++   +  
Sbjct: 55  SQAITKKQIIEEVSMETKESKKTVEKIMNGIFDNIYKHLENNEKIYIHKFGMYYNIFRKK 114

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           R  +N++T +++ I+   +  FK S I +  I  +++ +K
Sbjct: 115 RCIKNMRTKEDIHIESSHMPHFKFSKIFRDLIKVNVKAKK 154


>gi|162146838|ref|YP_001601299.1| DNA-binding protein HU-beta [Gluconacetobacter diazotrophicus PAl
          5]
 gi|161785415|emb|CAP54963.1| putative DNA-binding protein HU-beta [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 89

 Score = 76.9 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 40/89 (44%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          ++++ +   +      +   +T+    L   I     +     + SF TF V +  +R  
Sbjct: 1  MSKAFIAAVLQDSLACTGVAATKAADDLVGAIVAELKQEGGFTLPSFGTFTVHKTKARKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T + VK+   + V FKAS +LKK +
Sbjct: 61 LNPRTGEPVKVKAGKTVRFKASPVLKKAV 89


>gi|91204996|ref|YP_537351.1| integration host factor alpha-subunit [Rickettsia bellii
          RML369-C]
 gi|157827672|ref|YP_001496736.1| integration host factor alpha-subunit [Rickettsia bellii OSU
          85-389]
 gi|91068540|gb|ABE04262.1| Integration host factor alpha-subunit [Rickettsia bellii
          RML369-C]
 gi|157802976|gb|ABV79699.1| Integration host factor alpha-subunit [Rickettsia bellii OSU
          85-389]
          Length = 84

 Score = 76.9 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV 73
          ++ E G S+      V  +F  I D   + + + + +F +F VK K SR G N  T  ++
Sbjct: 2  LNAELGFSKSLCEEVVNAVFTNILD-IAKEQKLILKNFGSFEVKHKNSRPGINFHTKSQI 60

Query: 74 KIDPRRVVVFKASSILKKRIMDD 96
           I+P+ ++ F  S+ LK  I ++
Sbjct: 61 TIEPKNILRFVPSAKLKALINEN 83


>gi|83950622|ref|ZP_00959355.1| DNA-binding protein HU [Roseovarius nubinhibens ISM]
 gi|83838521|gb|EAP77817.1| DNA-binding protein HU [Roseovarius nubinhibens ISM]
          Length = 95

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 44/95 (46%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K +T+S L   +++E G  +K +   +  +   I      G A+ +      + +++ 
Sbjct: 1  MAKPLTKSQLSAVLAEEMGSDKKSAAAALDAVCAVITREVSNGGAVTLPGVGKIYCRERP 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R+ RN  T Q++K +  +VV    +  LK  +  
Sbjct: 61 ERMVRNPATGQQIKKEADKVVKMTIAKALKDSVNG 95


>gi|46581589|ref|YP_012397.1| DNA-binding protein HU [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|120601251|ref|YP_965651.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris DP4]
 gi|46451012|gb|AAS97657.1| DNA-binding protein HU [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|120561480|gb|ABM27224.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris DP4]
 gi|311235232|gb|ADP88086.1| histone family protein DNA-binding protein [Desulfovibrio
          vulgaris RCH1]
          Length = 95

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 5  ITRSDLVKSISKEFG---LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +T+++ V ++         ++  + +   T    + D    G+ +++       V ++ +
Sbjct: 2  LTKAEFVAALKDSLPDVFETKVSAEKAYDTFCKIMADGVANGQGVRLPGVGALTVTERAA 61

Query: 62 RVGRNLQTNQEVKID 76
          R GRN QT Q + I 
Sbjct: 62 RTGRNPQTGQTITIP 76


>gi|150007590|ref|YP_001302333.1| putative DNA-binding protein HU [Parabacteroides distasonis ATCC
          8503]
 gi|301310444|ref|ZP_07216383.1| DNA-binding protein HU [Bacteroides sp. 20_3]
 gi|149936014|gb|ABR42711.1| putative DNA-binding protein HU [Parabacteroides distasonis ATCC
          8503]
 gi|300832018|gb|EFK62649.1| DNA-binding protein HU [Bacteroides sp. 20_3]
          Length = 96

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 42/91 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   +L+  ++     + K+ +  ++ L + +    V  + I +  F  F VK+K  R+ 
Sbjct: 1  MKNKELITELANRMDWTSKEVSDMLSALSSVVSSKLVDNDTIYLQGFGQFEVKKKAERIS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N    +   + P+ V VFK  + +K R+ +
Sbjct: 61 VNPANGKRYLVPPKLVPVFKPGTTVKNRLKE 91


>gi|330813566|ref|YP_004357805.1| integration host factor beta subunit [Candidatus Pelagibacter sp.
          IMCC9063]
 gi|327486661|gb|AEA81066.1| integration host factor beta subunit [Candidatus Pelagibacter sp.
          IMCC9063]
          Length = 101

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 3  KTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          KT  + +L++ +  ++  +   D  + V  +F  + +    G  ++I  F     K    
Sbjct: 4  KTFVKKELIQELQSKYPKILNADIEKTVEGIFKYLSNQLASGHNVEIRGFGMLKTKATKP 63

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSIL 89
          R  RN ++ + V++  +R + +K+S +L
Sbjct: 64 RTARNPKSGESVEVPAKRKISWKSSKLL 91


>gi|289548636|ref|YP_003473624.1| histone family protein DNA-binding protein [Thermocrinis albus
          DSM 14484]
 gi|289182253|gb|ADC89497.1| histone family protein DNA-binding protein [Thermocrinis albus
          DSM 14484]
          Length = 95

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 50/95 (52%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R +L++ +S+E  +SR+D+ + V  +   + +  ++   +++ +F  F + +   R  
Sbjct: 1  MNRENLIRRVSEELKVSREDARKLVRGIVESMVEVLIQHRKLELRNFGVFRIGKIRGRFV 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
          +N +T  E+ +     V FK S  + ++I  + +G
Sbjct: 61 KNPRTGVEMYVAESYTVRFKPSRHVIRKINGENQG 95


>gi|270643381|ref|ZP_06222167.1| DNA-binding protein HU-2 [Haemophilus influenzae HK1212]
 gi|270317269|gb|EFA28837.1| DNA-binding protein HU-2 [Haemophilus influenzae HK1212]
          Length = 46

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 24/46 (52%)

Query: 49 SSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            F TF V ++ +R GRN QT  E++I   +V  F +   LK  I 
Sbjct: 1  IGFGTFKVNERAARTGRNPQTGAEIQIAASKVPAFVSGKALKDAIK 46


>gi|260889031|ref|ZP_05900294.1| DNA-binding protein HU [Leptotrichia hofstadii F0254]
 gi|260861091|gb|EEX75591.1| DNA-binding protein HU [Leptotrichia hofstadii F0254]
          Length = 70

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 28 FVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDP 77
           V      +  + + G++++   + TF VK++ +R G N QT +E+KI  
Sbjct: 1  MVNQFLETVEKTLLNGDSVQFVGWGTFEVKERAARTGINPQTKKEIKIPA 50


>gi|13357842|ref|NP_078116.1| DNA-binding protein HU-alpha (HU-2) [Ureaplasma parvum serovar 3
           str. ATCC 700970]
 gi|167971917|ref|ZP_02554194.1| DNA-binding protein HU [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|168282463|ref|ZP_02690130.1| DNA-binding protein HU [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|168308619|ref|ZP_02691294.1| DNA-binding protein HU [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|170762221|ref|YP_001752366.1| DNA-binding protein HU [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|14194633|sp|Q9PQK9|DBH_UREPA RecName: Full=DNA-binding protein HU
 gi|11356844|pir||H82909 DNA-binding protein Hu-alpha (HU-2) UU282 [imported] - Ureaplasma
           urealyticum
 gi|6899255|gb|AAF30691.1|AE002125_2 DNA-binding protein Hu-alpha (HU-2) [Ureaplasma parvum serovar 3
           str. ATCC 700970]
 gi|168827798|gb|ACA33060.1| DNA-binding protein HU [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171902890|gb|EDT49179.1| DNA-binding protein HU [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|182675752|gb|EDT87657.1| DNA-binding protein HU [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186700669|gb|EDU18951.1| DNA-binding protein HU [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 130

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 43/95 (45%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           K  TRS ++  +SK   + +K +  F+ T    +     R + +++ +   F V  +  R
Sbjct: 6   KAKTRSQMIDELSKMLNIEKKQTKAFMDTYEAFLILELSRAKEVRLGNIGKFKVSVRAER 65

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
            G N +T + V I  + +  F  +  +K+ I   +
Sbjct: 66  KGINPKTGETVIIPEKTIPKFTFTKGIKEIINAGI 100


>gi|298385402|ref|ZP_06994960.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
 gi|298261543|gb|EFI04409.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
          Length = 91

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 41/90 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + ++V+ +     +SR  + + V  +F+ I +S  RGE++ I  FAT        +  
Sbjct: 1  MKKIEIVEHVINNTTISRSQAIQAVDCVFDAIENSLCRGESVYIRGFATIKAHTSKRKKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          RN+     V I  +R      S  LK R+ 
Sbjct: 61 RNISKGTTVVIPAQRSAKLIISKQLKARMN 90


>gi|189461333|ref|ZP_03010118.1| hypothetical protein BACCOP_01983 [Bacteroides coprocola DSM
          17136]
 gi|189431862|gb|EDV00847.1| hypothetical protein BACCOP_01983 [Bacteroides coprocola DSM
          17136]
          Length = 371

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 46/95 (48%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS   T+ DL   +++   ++  D+  FV TLF  + +S +  + +KI    TF + +  
Sbjct: 1  MSDKFTQQDLADLLAQRHEMNPADAEAFVRTLFALVEESVISDKYVKIKGLGTFKLIEVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +R   ++ T + ++I     + F   S +++ +  
Sbjct: 61 ARESIDINTGERIEIREHSRISFTPDSTMRETVNK 95


>gi|298251892|ref|ZP_06975695.1| histone family protein DNA-binding protein [Ktedonobacter racemifer
           DSM 44963]
 gi|297546484|gb|EFH80352.1| histone family protein DNA-binding protein [Ktedonobacter racemifer
           DSM 44963]
          Length = 120

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 13/94 (13%), Positives = 47/94 (50%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
           + +L+  ++ + G++ K++++ +    + + +   +G  +++  F T++++    R  ++
Sbjct: 13  KDELIHQVAAKAGMNLKETSKIIDAFTDVVREDVSQGHEVRLMGFGTWNLRDVAPRKVKS 72

Query: 67  LQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           ++   ++ I  R+ V F   ++L +        R
Sbjct: 73  IRGGDQITIPARKRVGFSVGAVLSQAAQGAEHTR 106


>gi|156097106|ref|XP_001614586.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148803460|gb|EDL44859.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 188

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 50/100 (50%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S+ IT+  +++ +S E   S+K   + +  +F+ I       E I I  F  ++   +  
Sbjct: 55  SQAITKKQIIEEVSMETKESKKTVEKIMNGIFDNIYKHLENNEKIYIHKFGMYYNIFRKK 114

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           R  +N++T +++ I+   +  FK S I +  I  +++ ++
Sbjct: 115 RCIKNMRTKEDIHIESSHMPHFKFSKIFRDLIKVNVKAKR 154


>gi|254819110|ref|ZP_05224111.1| DNA-binding protein HU [Mycobacterium intracellulare ATCC 13950]
          Length = 207

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 44/85 (51%)

Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV 73
          ++++    R+ +T  V  + + I  +  +G+++ I+ F  F  +++ +RV RN +T + V
Sbjct: 2  LTQKLNTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVARNPRTGETV 61

Query: 74 KIDPRRVVVFKASSILKKRIMDDMR 98
          K+ P  V  F+  +  K  +    R
Sbjct: 62 KVKPTSVPAFRPGAQFKAVVSGAQR 86


>gi|209543183|ref|YP_002275412.1| histone family protein DNA-binding protein [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209530860|gb|ACI50797.1| histone family protein DNA-binding protein [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 89

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          ++++ +   +      +   + +    L   I           + SF TF V +  +R  
Sbjct: 1  MSKAFIAAVLQDSLACTGVAAAKAADDLVGAIVAELKHEGGFTLPSFGTFSVHKTKARKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T + VK+   + V FKAS +LKK I
Sbjct: 61 LNPRTGEPVKVKAGKTVRFKASPVLKKTI 89


>gi|162146745|ref|YP_001601204.1| DNA-binding protein HU-alpha [Gluconacetobacter diazotrophicus
          PAl 5]
 gi|209543268|ref|YP_002275497.1| histone family protein DNA-binding protein [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|161785320|emb|CAP54866.1| putative DNA-binding protein HU-alpha [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209530945|gb|ACI50882.1| histone family protein DNA-binding protein [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 89

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 40/89 (44%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          ++++ +   I      +   + +  + L   I     +     + SF TF VK+  +R  
Sbjct: 1  MSKAFIAAVIQDSIDCTGVAANQAASDLIAAIVREMKKEGGFTLPSFGTFTVKKTKARKA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           N +T + VK+   + V FKAS  LKK +
Sbjct: 61 LNPRTGEPVKVKAGKTVRFKASPNLKKAV 89


>gi|156088029|ref|XP_001611421.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154798675|gb|EDO07853.1| conserved hypothetical protein [Babesia bovis]
          Length = 175

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 42/96 (43%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+T+  L+  I++   +++KD    V      I       + + I+ F  FH   +G R
Sbjct: 77  ETVTKKQLISEIAQTTNMTQKDVGIVVDEFLKSIVKHLGENKEVSIAKFGLFHNSLRGPR 136

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           + +NLQT +     P  V   +    +K  +   ++
Sbjct: 137 LMKNLQTGEMYTAKPVYVPNVRFYEAVKAEVNQSLK 172


>gi|92117005|ref|YP_576734.1| histone-like DNA-binding protein [Nitrobacter hamburgensis X14]
 gi|91799899|gb|ABE62274.1| histone-like DNA-binding protein [Nitrobacter hamburgensis X14]
          Length = 99

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 6/99 (6%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK- 59
          M+  +T+S LV+ IS + GLS+KD    +  L         +  A  +  FA F V +K 
Sbjct: 1  MATQMTKSQLVEKISAQAGLSKKDVKGVLEALATTGYKELKKTGAFLLPGFAKFVVIKKP 60

Query: 60 --GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
             +R G N  T + +       R++V  +     K  +
Sbjct: 61 ATKARKGTNPFTGEPMTFKAKPARKIVRARPVKAAKDAV 99


>gi|281491375|ref|YP_003353355.1| DNA-binding protein HU [Lactococcus lactis subsp. lactis KF147]
 gi|281375116|gb|ADA64634.1| DNA-binding protein HU [Lactococcus lactis subsp. lactis KF147]
          Length = 108

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + +L+  ++    LS+ ++ +        I      G  + IS+F TF V+++ +RV  +
Sbjct: 4  KQELIDYVADRTELSKLNAAKA-------ITYYISEGTPVHISNFGTFEVRKRAARVSHD 56

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          + + +++ +  + + VF+A   LK     ++
Sbjct: 57 VHSREKILVGEQNIPVFRAGKALKLATKQEL 87


>gi|49188522|ref|YP_025620.1| single-stranded binding protein [Pseudomonas syringae pv.
          maculicola]
 gi|47525105|gb|AAT35119.1| single-stranded binding protein [Pseudomonas syringae pv.
          maculicola]
 gi|320326966|gb|EFW82983.1| single-stranded binding protein [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 95

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 39/94 (41%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  LV  I++     +  + + +  L   + D    G  I +       V ++ +R 
Sbjct: 2  ALTKDQLVAGIAEAIDAPKTTARKALEQLGQIVADQLESGAEITLPGIGKLKVAERPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN  T   ++I  ++ + F  + +L   I   +
Sbjct: 62 GRNPSTGAAIEIAAKKAIKFVPAKVLNDSINKGL 95


>gi|323345507|ref|ZP_08085730.1| hypothetical protein HMPREF0663_12266 [Prevotella oralis ATCC
          33269]
 gi|323093621|gb|EFZ36199.1| hypothetical protein HMPREF0663_12266 [Prevotella oralis ATCC
          33269]
          Length = 441

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 5  ITR-SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + + S L   I K++ LS+K++  FV+ +F  I ++    + +KI    TF V     R 
Sbjct: 3  MNKISYLSTFIQKKYSLSQKEADNFVSQMFEVISEALHTEKQVKIKGLGTFKVMSVSPRE 62

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            N+ T +   I+ R  + F   + ++ R+ 
Sbjct: 63 SVNVNTGERFVIEGRDKISFTPETSMRDRVN 93


>gi|283852590|ref|ZP_06369857.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          FW1012B]
 gi|283572038|gb|EFC20031.1| histone family protein DNA-binding protein [Desulfovibrio sp.
          FW1012B]
          Length = 86

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 38/82 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+++ +K  + E G+++  +   +      +  +   GE++K     TF       R G
Sbjct: 1  MTQTEFIKRFATESGMTQDAAKNCLALAGQMVEATMRAGESVKFPCLGTFTPVATKERQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
          RN +T + + I     + FKA+
Sbjct: 61 RNPRTGEPLTIPAGVRIKFKAA 82


>gi|116620138|ref|YP_822294.1| histone family protein DNA-binding protein [Candidatus Solibacter
          usitatus Ellin6076]
 gi|116223300|gb|ABJ82009.1| histone family protein DNA-binding protein [Candidatus Solibacter
          usitatus Ellin6076]
          Length = 100

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 1  MSKT-ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          M+ T +T++ LV+ ++++  ++ K +   +  L         +     +          +
Sbjct: 1  MAATRLTQTQLVRQLAEKAEVNNKVARALLDNLAATAISEVKKNGVFVLPGIGRLVRVDR 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           +R+GRN  T + +KI  ++VV F+ +   K  I
Sbjct: 61 KARMGRNPATGEAIKIAAKKVVKFRVAKSAKDAI 94


>gi|238898294|ref|YP_002923975.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Candidatus
          Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466053|gb|ACQ67827.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation [Candidatus
          Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 75

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 36/64 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +++L+  ++ +  +S+  +   V +L N + +    G A+ ++ F TF VK++ +R G
Sbjct: 1  MKKNELITKVAVDAEISKAKAEAEVNSLINSVTEELKAGGAVALTGFGTFQVKERAARTG 60

Query: 65 RNLQ 68
          R  +
Sbjct: 61 RTPK 64


>gi|301384246|ref|ZP_07232664.1| single-stranded binding protein [Pseudomonas syringae pv. tomato
          Max13]
 gi|302063657|ref|ZP_07255198.1| single-stranded binding protein [Pseudomonas syringae pv. tomato
          K40]
          Length = 95

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 38/94 (40%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  LV  I++     +  + + +  L   + D    G  I +       V  + +R 
Sbjct: 2  ALTKDQLVAGIAEAIDAPKTTARKALEQLGQIVADQLESGAEITLPGIGKLKVADRPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN  T   ++I  ++ + F  + +L   I   +
Sbjct: 62 GRNPSTGAAIEIAAKKAIKFVPAKVLNDSINKGL 95


>gi|282881456|ref|ZP_06290130.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1]
 gi|281304682|gb|EFA96768.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1]
          Length = 457

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 5  ITR-SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + + +DL   + ++  L+++++  F+    + +       + +KI    TF V     R 
Sbjct: 1  MIKLTDLAAVLVEKAELTKREADFFIPLFIDVLTTGLKSDKQVKIKGLGTFKVTAVSPRE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            ++ T + + I+ R  + F     L+ R+ 
Sbjct: 61 SVDVNTGERILIEGRDKISFTPEVALRDRVN 91


>gi|39938803|ref|NP_950569.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
 gi|39938843|ref|NP_950609.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
 gi|39721912|dbj|BAD04402.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
          OY-M]
 gi|39721952|dbj|BAD04442.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
          OY-M]
          Length = 96

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKI-SSFATFHVKQKGSRV 63
          +T+ +L+K I++    S   +  F       + ++    E + +      F +K + + +
Sbjct: 1  MTKKELIKKIAEVNKTSISKTEEFYHIFEKTLIEAITTNEEVVLSPQIGKFQLKPRKAYI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T +++KI  + VV FK S  +K +
Sbjct: 61 GRNPKTKKKLKIPAKTVVAFKLSKSIKDK 89


>gi|253578053|ref|ZP_04855325.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850371|gb|EES78329.1| predicted protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 209

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 41/88 (46%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            +T+T+S  ++ +++   L  KD+      +F E+      G  IK   F TF    + +
Sbjct: 112 GRTLTQSAFIRRLARSNDLQIKDADIITKQVFRELISCLKDGFCIKFEGFGTFGTYTRKA 171

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSIL 89
           R  ++  T +   I  + VV FK S+ L
Sbjct: 172 RSVKHPVTQERCTIKEKAVVKFKPSAKL 199


>gi|34557406|ref|NP_907221.1| hypothetical protein WS1019 [Wolinella succinogenes DSM 1740]
 gi|34483122|emb|CAE10121.1| hypothetical protein WS1019 [Wolinella succinogenes]
          Length = 99

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 44/99 (44%), Gaps = 1/99 (1%)

Query: 1  MSKTITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          M + + +++ V+ + +  G  ++K++ + V+     +  +  +   +++  F  F    +
Sbjct: 1  MEECMNKAEFVELVKEVGGFETKKEAEKAVSAFTAAVEKALEKKGNVELVGFGKFEAVLQ 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            + G+   ++++ K   + V  FK    LK  +    +
Sbjct: 61 KGKEGKVPGSDKKYKTKDKFVPKFKPGKGLKDLVAKAKK 99


>gi|119383159|ref|YP_914215.1| histone family protein DNA-binding protein [Paracoccus
          denitrificans PD1222]
 gi|119372926|gb|ABL68519.1| histone family protein DNA-binding protein [Paracoccus
          denitrificans PD1222]
          Length = 99

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 40/93 (43%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          SK +T++ LV +++ E G  +K +   +  L   +  +   G A+ +        + +  
Sbjct: 6  SKPMTKTQLVATLADEMGSDKKTAAAALDALSAVVSRTVAEGGALTLPGIGKVACRTRPE 65

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          R  RN QT + +     +VV    +  LK  + 
Sbjct: 66 RQVRNPQTQEMMTKPADKVVKVTIAKALKDSVN 98


>gi|310780573|ref|YP_003968905.1| histone family protein DNA-binding protein [Ilyobacter polytropus
          DSM 2926]
 gi|309749896|gb|ADO84557.1| histone family protein DNA-binding protein [Ilyobacter polytropus
          DSM 2926]
          Length = 92

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+ + +    +  G  S+ ++ R +  L + I +  V G  +    +  + V ++  R 
Sbjct: 1  MTKKEFIAKYCENGGFVSKAEAERKLNALLDTIENILVDGNEVNFIGWGKWEVVERAKRK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           RN QT +++ +  ++VV FK    L  +I +
Sbjct: 61 VRNPQTGRKMTVKAKKVVKFKPGKKLVDKIAN 92


>gi|84996135|ref|XP_952789.1| bacterial histone-like protein [Theileria annulata strain Ankara]
 gi|65303786|emb|CAI76163.1| bacterial histone-like protein, putative [Theileria annulata]
          Length = 170

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 38/99 (38%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
            + D+V  + ++   ++K+  + V    + I         + +S F  F    +G R  R
Sbjct: 66  NKRDIVSEVGEKLNKTQKEVGQVVDEFLSSIKRHLSNDSEVSLSKFGVFKNSLRGERRMR 125

Query: 66  NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           NLQT +     P  V   +     K  + D ++ +    
Sbjct: 126 NLQTGEIFTAKPVHVPTLRFYDTFKAELNDKLKSKDKRN 164


>gi|331695682|ref|YP_004331921.1| histone family protein DNA-binding protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326950371|gb|AEA24068.1| histone family protein DNA-binding protein [Pseudonocardia
           dioxanivorans CB1190]
          Length = 185

 Score = 74.9 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 1/97 (1%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + ++ LV +++   G  R+ +   V  + + I D+   G ++ ++ F  F  + + +RV 
Sbjct: 1   MNKTQLVDALAARLG-DRRTAASAVDGVLSIIVDTVGSGGSVSLTGFGVFEARARAARVA 59

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           RN +T   V + P  V  F+     K  +  +    +
Sbjct: 60  RNPRTGDTVAVPPTVVPSFRPGIAFKATVSGNGAAAE 96


>gi|86608286|ref|YP_477048.1| DNA-binding protein HU [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556828|gb|ABD01785.1| DNA-binding protein HU [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 195

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 5   ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +TR  L + ++ +  GL+ + +   +  + + I     +G +++++ F TF ++ + +R 
Sbjct: 93  LTRRLLARQMAAQVDGLTVEMAAAALEAMLDSISQCLAQGGSVRLARFGTFSLRHRPARQ 152

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSIL 89
             + +T   V I    V  F  S  L
Sbjct: 153 TYHPRTKAPVHIPAADVPHFVPSPEL 178


>gi|67458593|ref|YP_246217.1| integration host factor alpha-subunit [Rickettsia felis
          URRWXCal2]
 gi|75536941|sp|Q4UN06|HLP_RICFE RecName: Full=Histone-like DNA-binding protein
 gi|67004126|gb|AAY61052.1| Integration host factor alpha-subunit [Rickettsia felis
          URRWXCal2]
          Length = 95

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+  +   +S + G S       V T+F  I +   + + + + +F +F VKQK  R 
Sbjct: 2  TITKEKIATMLSSKLGFSNNLCEEIVNTVFFNILE-IAKEQKLTLKNFGSFEVKQKNPRP 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          G N  T   + I+ ++ + F  S+ LK  I +
Sbjct: 61 GINFHTKSPIIIESKKNLRFIPSTKLKALINE 92


>gi|157826134|ref|YP_001493854.1| integration host factor alpha-subunit [Rickettsia akari str.
          Hartford]
 gi|157800092|gb|ABV75346.1| Integration host factor alpha-subunit [Rickettsia akari str.
          Hartford]
          Length = 96

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT+  +   +S + G S       V T+F+ I +   R + + + +F  F VK K  R 
Sbjct: 2  TITKEKISAMLSSKLGFSNNLCKEIVNTVFSNILE-IAREQKLTLKNFGRFEVKHKNPRP 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          G N  T   V I+ ++ + F  S+ LK  +  
Sbjct: 61 GINFHTKSPVIIESKKSLRFVPSAKLKALVNK 92


>gi|78776705|ref|YP_393020.1| histone-like DNA-binding protein [Sulfurimonas denitrificans DSM
          1251]
 gi|78497245|gb|ABB43785.1| Histone-like DNA-binding protein [Sulfurimonas denitrificans DSM
          1251]
          Length = 94

 Score = 74.6 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + ++  V+ +       ++ ++   +      +  + V+ E + +  F +F    +  + 
Sbjct: 1  MNKAQFVELVQASGNYKTKVEAEAAIKAFTEAVASALVKKEDVSLVGFGSFGASLQKGKS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          G+   T++      + V  FKA   LK R+ 
Sbjct: 61 GKVPGTDKTYTTKDKMVPKFKAGKGLKDRVA 91


>gi|257485822|ref|ZP_05639863.1| single-stranded binding protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|331013726|gb|EGH93782.1| single-stranded binding protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 104

 Score = 74.6 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 38/100 (38%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
            +T+  LV  I++     +  + + +  L   + D    G  I +       V ++ +R 
Sbjct: 2   ALTKDQLVAGIAEAIDAPKTTARKALEQLGQIVADQLESGAEITLPGIGKLKVAERPART 61

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           GRN  T   ++I  ++ + F  + +L   I          
Sbjct: 62  GRNPSTGAAIEIAAKKAIKFVPAKVLNDSINKGSPQNSEK 101


>gi|322836844|ref|YP_004210758.1| histone family protein DNA-binding protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321165931|gb|ADW71631.1| histone family protein DNA-binding protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 125

 Score = 74.6 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 38/86 (44%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           +LVK ++++  LS K S  F   L +       +     I         Q+ +R+GRN Q
Sbjct: 37  ELVKLVAEKMELSLKQSAAFFDLLASTAIQETKKNGEFTIPGLGKLVKAQRAARIGRNPQ 96

Query: 69  TNQEVKIDPRRVVVFKASSILKKRIM 94
           T + +KI  +  V F+ +   K  I 
Sbjct: 97  TGESIKIKAKTAVKFRVAKAAKDMIA 122


>gi|315022339|gb|EFT35367.1| DNA-binding protein HU-beta [Riemerella anatipestifer RA-YM]
          Length = 87

 Score = 74.2 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRVGRNLQTNQE 72
          ++K+  +++  + + + +  N + ++  + +  + +  F TF V ++ +R G N  T + 
Sbjct: 1  MAKDAEITKAAAKKALESFVNAVTETLKKKDGKVSLVGFGTFSVAERAARQGINPATKKA 60

Query: 73 VKIDPRRVVVFKASSILKKRIMDDMR 98
          +KI  ++V  FKA S L   +    +
Sbjct: 61 IKIPAKKVAKFKAGSELADAVAGAKK 86


>gi|213972297|ref|ZP_03400361.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
          T1]
 gi|213922946|gb|EEB56577.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
          T1]
          Length = 95

 Score = 74.2 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 38/94 (40%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  LV  I++     +  + + +  L   + D    G  I +       V  + +R 
Sbjct: 2  ALTKDQLVAGIAEAIDAQKTTARKALEQLGQIVADQLESGAEITLPGIGKLKVADRPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          GRN  T   ++I  ++ + F  + +L   I   +
Sbjct: 62 GRNPSTGAAIEIAAKKAIKFVPAKVLNDSINKGL 95


>gi|327313607|ref|YP_004329044.1| DNA-binding protein HU [Prevotella denticola F0289]
 gi|326944082|gb|AEA19967.1| DNA-binding protein HU [Prevotella denticola F0289]
          Length = 419

 Score = 74.2 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 7/98 (7%)

Query: 1  MSKT---ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          M+KT   +    +  ++++ + L   D+  FV T F  I      G  +K+    TF V+
Sbjct: 1  MAKTGMQM----ITNTLARLYKLPAADAMAFVDTFFAIISSELKNGRQVKVKGLGTFKVQ 56

Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
              R   N+ T + V I+    V F   + +K+ +  
Sbjct: 57 SVKPRESVNVNTGERVLIEGHDKVTFTPDTAMKELVNK 94


>gi|325854317|ref|ZP_08171516.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A]
 gi|325484111|gb|EGC87045.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A]
          Length = 419

 Score = 74.2 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 7/98 (7%)

Query: 1  MSKT---ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          M+KT   +    +  ++++ + L   D+  FV T F  I      G  +K+    TF V+
Sbjct: 1  MAKTGMQM----ITNTLARLYKLPAADAMAFVDTFFAIISSELKNGRQVKVKGLGTFKVQ 56

Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
              R   N+ T + V I+    V F   + +K+ +  
Sbjct: 57 SVKPRESVNVNTGERVLIEGHDKVTFTPDTAMKELVNK 94


>gi|154492266|ref|ZP_02031892.1| hypothetical protein PARMER_01900 [Parabacteroides merdae ATCC
          43184]
 gi|218261906|ref|ZP_03476579.1| hypothetical protein PRABACTJOHN_02250 [Parabacteroides johnsonii
          DSM 18315]
 gi|154087491|gb|EDN86536.1| hypothetical protein PARMER_01900 [Parabacteroides merdae ATCC
          43184]
 gi|218223700|gb|EEC96350.1| hypothetical protein PRABACTJOHN_02250 [Parabacteroides johnsonii
          DSM 18315]
          Length = 100

 Score = 74.2 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 43/95 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M   +   +LV  ++   G + ++    ++ L + +    V  + I +  F  F VK+K 
Sbjct: 1  MDADMKNKELVTELAARMGWTAQEVAETLSVLSSVVSSRLVDNDTIYLQGFGQFEVKKKA 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R+  N    +   + P+ V VFK  + +K ++ +
Sbjct: 61 ERISVNPSNGKRYLVPPKLVPVFKPGTTVKNKLKE 95


>gi|313203644|ref|YP_004042301.1| histone family protein DNA-binding protein [Paludibacter
           propionicigenes WB4]
 gi|312442960|gb|ADQ79316.1| histone family protein DNA-binding protein [Paludibacter
           propionicigenes WB4]
          Length = 494

 Score = 74.2 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 49/102 (48%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           +++  +S +  +S++ S  F+  + + I +S + G+ +KI +F TF ++    R   N+ 
Sbjct: 10  EVIDLVSSKAQVSKRVSEDFLKVMISTIEESLLSGDVVKIKNFGTFKLQWNEPRKSVNVH 69

Query: 69  TNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSP 110
           + +++ +     V F    +LK  + +        + D  +P
Sbjct: 70  SGEDILLAGYYKVTFTPDVVLKDLVNEPFAHLTPVELDSENP 111


>gi|15604549|ref|NP_221067.1| integration host factor alpha-subunit (himA) [Rickettsia
          prowazekii str. Madrid E]
 gi|81554787|sp|Q9ZCL7|HLP_RICPR RecName: Full=Histone-like DNA-binding protein
 gi|3861244|emb|CAA15143.1| INTEGRATION HOST FACTOR ALPHA-SUBUNIT (himA) [Rickettsia
          prowazekii]
 gi|292572345|gb|ADE30260.1| Integration host factor alpha-subunit [Rickettsia prowazekii
          Rp22]
          Length = 95

 Score = 74.2 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT++ +   +S + G S       V T+F+ I +   + + + + +F +F VKQK  R 
Sbjct: 2  TITKNKISLMLSSKLGFSNNLCEAIVNTVFSNILE-IAKVQKLTLKNFGSFEVKQKTPRP 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          G N  T   V I  ++ + F  S  LK  I   M
Sbjct: 61 GINFHTKSPVMIASKKNLRFTPSEKLKALINKSM 94


>gi|319956219|ref|YP_004167482.1| histone family protein DNA-binding protein [Nitratifractor
          salsuginis DSM 16511]
 gi|319418623|gb|ADV45733.1| histone family protein DNA-binding protein [Nitratifractor
          salsuginis DSM 16511]
          Length = 92

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+++ V+ + ++ G  S+  + + +      I ++  R E + +  F TF   +   + 
Sbjct: 1  MTKAEFVELVQEKGGYESKAAAEKAIKAFTEAIEEALKRKETVTLVGFGTFSTVEVPEKS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          G+   T++           FK    +K  +  
Sbjct: 61 GKVPGTDKTYTKPAHTAPKFKFGKSIKDAVAK 92


>gi|51473887|ref|YP_067644.1| integration host factor alpha subunit [Rickettsia typhi str.
          Wilmington]
 gi|81636348|sp|Q9AKA7|HLP_RICTY RecName: Full=Histone-like DNA-binding protein
 gi|13235499|emb|CAC33761.1| Integration host factor alpha-subunit [Rickettsia typhi]
 gi|51460199|gb|AAU04162.1| integration host factor alpha subunit [Rickettsia typhi str.
          Wilmington]
          Length = 95

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          TIT++ +   ++ + G S       V T+F+ I +   + + + + +F +F VKQK  R 
Sbjct: 2  TITKNKISLMLNSKLGFSNNLCEEIVNTVFSNILE-IAKVQKLTLKNFGSFEVKQKKQRP 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          G N  T   V I  ++ + F  S  LK  I   MR
Sbjct: 61 GINFHTKSPVMIASKKNLRFSPSEKLKALINKSMR 95


>gi|331703904|ref|YP_004400591.1| hypothetical protein MLC_8840 [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802459|emb|CBW54614.1| Hypothetical transmembrane protein, Predictedhistone like DNA
           binding protein [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 299

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 5   ITRSDLVKSISKE---FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +T+  L+  + ++     +++          F     + V G+ + ++ F  F   +K +
Sbjct: 206 VTKGMLLDELYEDPEFIEMTKVSIKTIFDKAFIVASKNLVAGDHVVLAKFGKFETVEKEA 265

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           ++  N  T +++++   +VV FK S  +K+++ +
Sbjct: 266 QMKMNPLTQEQIEVPAHKVVKFKLSKSVKEKMNE 299


>gi|75675396|ref|YP_317817.1| histone-like DNA-binding protein [Nitrobacter winogradskyi
          Nb-255]
 gi|74420266|gb|ABA04465.1| histone-like DNA-binding protein [Nitrobacter winogradskyi
          Nb-255]
          Length = 99

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 6/99 (6%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK- 59
          M+  +T+S LV+ IS + GLS+KD    +  L         +  A  +  FA F V +K 
Sbjct: 1  MAAQMTKSQLVEKISTQVGLSKKDVKGVLEALATTGYKELKKTGAFLLPGFAKFVVIKKP 60

Query: 60 --GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
             +R G N  T + +       R++V  +     K  +
Sbjct: 61 ATKARKGTNPFTGEPMTFKAKPARKIVRARPVKAAKDAV 99


>gi|237750349|ref|ZP_04580829.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229373879|gb|EEO24270.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 97

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGLSRK-DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +SD VK+I +  G ++K D+ + + ++ + I       + +++  F  F    +  + 
Sbjct: 1  MKKSDFVKTIKEIGGYAKKEDAEKALDSVVDAITHVLKSNDTVELVGFGKFENAVQKGKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          G+   T++  K   + V  FK    LK  + 
Sbjct: 61 GKVPGTDKTYKTADKMVPKFKPGKALKDEVA 91


>gi|86605026|ref|YP_473789.1| DNA-binding protein HU [Synechococcus sp. JA-3-3Ab]
 gi|86553568|gb|ABC98526.1| DNA-binding protein HU [Synechococcus sp. JA-3-3Ab]
          Length = 108

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 5   ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + R  L + ++ +  GL+ K +   +  + + I      G +++++ F TF ++ + +R 
Sbjct: 6   LNRRLLARQMAAQVDGLTVKMAAAALEAMLDSISQCLAEGGSVRLARFGTFLLRPRPARQ 65

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111
             + +T   V I   +V  F  S  L          R+   D    PS
Sbjct: 66  TYHPRTKAPVHIPAAQVPYFVPSPEL------GHPRRERRGDLEAPPS 107


>gi|291276956|ref|YP_003516728.1| DNA-binding HU-like protein [Helicobacter mustelae 12198]
 gi|290964150|emb|CBG39995.1| DNA-binding protein HU homolog [Helicobacter mustelae 12198]
          Length = 93

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 38/92 (41%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + ++  V  + +     ++KD+   +      + ++  + E++++  F  F    +  + 
Sbjct: 1  MNKAQFVDLVKEAGAYATKKDAEVAIDAFVKAVENALTKKESVELVGFGKFETVLQKGKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          G+   +++  K   R V  FK    LK  +  
Sbjct: 61 GKVPGSDKSYKTADRFVPKFKPGKGLKDLVSK 92


>gi|330944003|gb|EGH46189.1| single-stranded binding protein [Pseudomonas syringae pv. pisi
          str. 1704B]
          Length = 97

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 39/93 (41%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  LV  I++     +  + + +  L   + D    G  I +       V ++ +R 
Sbjct: 2  ALTKDQLVAGIAEAIDAPKTTARKALEQLGQIVADQLESGAEITLPGIGKLKVAERPART 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN  T   ++I  ++ + F ++ +L   I   
Sbjct: 62 GRNPSTGAAIEIAAKKAIKFVSAKVLNDAINKG 94


>gi|193216658|ref|YP_001999900.1| DNA-binding protein HU [Mycoplasma arthritidis 158L3-1]
 gi|193001981|gb|ACF07196.1| DNA-binding protein HU [Mycoplasma arthritidis 158L3-1]
          Length = 92

 Score = 72.6 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 39/90 (43%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+ + S+  G  +         +   I +  V+   + IS F TF V +K     
Sbjct: 1  MNKRELIVAASENTGKPQVLIEEVFDEIQRLIIEELVKKNTVSISGFGTFWVIEKPESQR 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N  T +++ +  +    F+ S++ K ++ 
Sbjct: 61 INYFTKEKIVVAAKTEPKFRFSNVFKAQVN 90


>gi|198284191|ref|YP_002220512.1| histone family protein DNA-binding protein [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|198248712|gb|ACH84305.1| histone family protein DNA-binding protein [Acidithiobacillus
          ferrooxidans ATCC 53993]
          Length = 93

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 34/70 (48%)

Query: 25 STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84
          + RF+      I       E I I    T H   + +R GRNL T ++++I  RRVV FK
Sbjct: 23 AARFLEAFARTIRAEMHSAEKILIPEVDTLHFTNRSARKGRNLATGEKIQIPARRVVTFK 82

Query: 85 ASSILKKRIM 94
          A+   + R+ 
Sbjct: 83 ATKTFQDRVN 92


>gi|164504804|gb|ABY59642.1| DNA-binding protein HU [Flammeovirga yaeyamensis]
          Length = 79

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 36/79 (45%)

Query: 27  RFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKAS 86
           + +   FN + D    G  I I  F +F  K++ S+ GR++   + + I    +  FK S
Sbjct: 1   QVLEDFFNVVKDKMAEGNNIYIRRFGSFVNKKRASKKGRDISRGEIIPIPEHFIPSFKPS 60

Query: 87  SILKKRIMDDMRGRKCNKD 105
               ++I    + R  N++
Sbjct: 61  KEFVEKIKGSDKVRLINEN 79


>gi|288926971|ref|ZP_06420867.1| DNA-binding protein HU [Prevotella buccae D17]
 gi|288336254|gb|EFC74639.1| DNA-binding protein HU [Prevotella buccae D17]
          Length = 493

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 2  SKTITR---SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
           K + R   ++L +++S +  +S+ D+  FV  +F  + D   + + +KI SF TF +  
Sbjct: 3  GKKMNRIGITELARTLSSKHNMSQADAENFVRLMFAVVGDGLEQEKLVKIKSFGTFKMGS 62

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
             R   ++ T + + I+ R  + F   + L+  + 
Sbjct: 63 VKDRESVDVNTGERIVIEGRNKINFTPDNALRDFVN 98


>gi|32474163|ref|NP_867157.1| DNA-binding protein HU [Rhodopirellula baltica SH 1]
 gi|32444700|emb|CAD74702.1| probable DNA-binding protein HU [Rhodopirellula baltica SH 1]
 gi|327537506|gb|EGF24228.1| DNA-binding protein HU [Rhodopirellula baltica WH47]
          Length = 105

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 8/96 (8%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISSFATFHVKQ---KG 60
           T++ ++ +I++E  L++KD    + +L  EI  S  +G      I       +K    K 
Sbjct: 10  TKTQIIANIAEETELTKKDVAAVLDSLAAEIEKSLQKGGPGQFAIPGLCKIVLKDVPAKP 69

Query: 61  SRVGRNLQTNQEV---KIDPRRVVVFKASSILKKRI 93
            R GRN    +E+        + +  +    LK+ I
Sbjct: 70  KRKGRNPANGEEIWLAPKPASKKLTIRPLKGLKEMI 105


>gi|299133418|ref|ZP_07026613.1| histone family protein DNA-binding protein [Afipia sp. 1NLS2]
 gi|298593555|gb|EFI53755.1| histone family protein DNA-binding protein [Afipia sp. 1NLS2]
          Length = 99

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 6/99 (6%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK- 59
          M+  +T+S L++ I++   LS++D      +L         +     +  FA F V +K 
Sbjct: 1  MATQMTKSQLIEKIAEANELSKRDVKGVFESLATIGYKELKKNGTFLLPGFAKFVVIKKP 60

Query: 60 --GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
             +R G N  T + +       R++V  +     K  +
Sbjct: 61 ATKARKGTNPFTGEPMTFKAKPARKIVRARPVKAAKDAV 99


>gi|39939140|ref|NP_950906.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
 gi|39722249|dbj|BAD04739.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
          OY-M]
          Length = 96

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKI-SSFATFHVKQKGSRV 63
          + + +L+K I+     S   +  F     N +  +    E + +      F +K + S +
Sbjct: 1  MNKKELIKKIALANKTSVTKTEEFYNIFENTLIKAITTNEEVVLFPKIGKFKLKSRKSYI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T +++KI  + VV FK S  +K +
Sbjct: 61 GRNPKTKKKIKISAKTVVTFKLSKTIKDQ 89


>gi|83310262|ref|YP_420526.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1]
 gi|82945103|dbj|BAE49967.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum
          magneticum AMB-1]
          Length = 89

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 39/89 (43%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++S + K+I +  G S   +   V      I D         +  F +F   ++ +R G
Sbjct: 1  MSKSAMSKAIRQAAGCSVAQADAAVEAALAAIVDGVKTEGRFSLIGFGSFSKSERPARQG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          RN +T + + I     + F  S+ LKK +
Sbjct: 61 RNPRTGKTIDIAASTSIKFSTSAALKKSL 89


>gi|126667926|ref|ZP_01738891.1| integration host factor subunit alpha [Marinobacter sp. ELB17]
 gi|126627586|gb|EAZ98218.1| integration host factor subunit alpha [Marinobacter sp. ELB17]
          Length = 85

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          S+  E GL+++++   V   F+EI  +  + E +K+S F  F ++ K  R G
Sbjct: 19 SLYDELGLNKREAKEIVGAFFDEIRGALSQNEQVKLSGFGNFDLRDKKERPG 70


>gi|255009411|ref|ZP_05281537.1| putative integration host factor IHF alpha subunit [Bacteroides
          fragilis 3_1_12]
 gi|313147170|ref|ZP_07809363.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135937|gb|EFR53297.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 467

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 42/94 (44%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  +LV  +    G+ +KD+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNERLTIQNLVDLLVSRHGVPQKDADVFVREFFLLIEQALENDQYVKIKGLGTFKLIGVN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          SR   N+ T + +KI+    + F     L+  I 
Sbjct: 61 SRESVNINTGERIKIEGHTKISFTPDPSLRDIIN 94


>gi|42527215|ref|NP_972313.1| HU family DNA-binding protein [Treponema denticola ATCC 35405]
 gi|41817639|gb|AAS12224.1| DNA-binding protein, HU family [Treponema denticola ATCC 35405]
 gi|325474261|gb|EGC77449.1| HU family DNA-binding protein [Treponema denticola F0402]
          Length = 106

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 2/97 (2%)

Query: 1  MSKTITRSDLVKSISKEFGLSR-KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          M +  ++ D++ S+ +     + K          +E+     +G  ++I    +F     
Sbjct: 1  MKQKRSKIDIIDSVYRNNPQYQLKQINAIANLFLDELSVLLQQGIPVEIRGLGSFDFAVL 60

Query: 60 GSRV-GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            R   RN +T + V    R  V FK    LK+ +  
Sbjct: 61 HGRKNARNPKTGEAVLTADRCKVRFKPGKELKEALHK 97


>gi|39938549|ref|NP_950315.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
 gi|39721658|dbj|BAD04148.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
          OY-M]
          Length = 96

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKI-SSFATFHVKQKGSRV 63
          +T+ +L+K  ++    S   +  F     N +  +    E + +      F +K + + +
Sbjct: 1  MTKKELIKKTAEVNKTSISKTEEFYHIFENTLIKAITTNEEVVLSPQIGKFQLKPRKAYI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T +++KI  + VV FK S  +K +
Sbjct: 61 GRNPKTKKKLKIPAKTVVAFKLSKSIKDK 89


>gi|167973131|ref|ZP_02555408.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|167974791|ref|ZP_02557068.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|167976046|ref|ZP_02558323.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|167988544|ref|ZP_02570215.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|168361961|ref|ZP_02695140.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|195867588|ref|ZP_03079590.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198273620|ref|ZP_03206155.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|209554305|ref|YP_002284683.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225550891|ref|ZP_03771840.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225551578|ref|ZP_03772524.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|171903493|gb|EDT49782.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|184209058|gb|EDU06101.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188018798|gb|EDU56838.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188997726|gb|EDU66823.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195659567|gb|EDX52947.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195660645|gb|EDX53900.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198249648|gb|EDY74429.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|209541806|gb|ACI60035.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225379393|gb|EEH01758.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|225380045|gb|EEH02407.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 131

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 41/95 (43%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           K  TR  ++  +SK   + +K +  F+ T    +     R + ++  +   F V  +  R
Sbjct: 6   KAKTRVQMIDELSKMLNIDKKQTKTFMDTYEAFLILELSRAKEVRFGNIGKFKVTVRAER 65

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
            G N +T + V I  + +  F  +  +K+ I   +
Sbjct: 66  KGINPKTGETVIIPEKTIPKFTFTKGIKEIINAGI 100


>gi|296532061|ref|ZP_06894838.1| DNA-binding protein HU [Roseomonas cervicalis ATCC 49957]
 gi|296267623|gb|EFH13471.1| DNA-binding protein HU [Roseomonas cervicalis ATCC 49957]
          Length = 103

 Score = 71.5 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 35/88 (39%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++  L  +I     ++   +      +   I    V+     I  F  F V++   R  
Sbjct: 1  MSKKFLADTIQNSIEITGVGANALAGDIIEAIKAEIVKTGRFTIPDFGAFIVRETPKRTA 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92
           N +T ++V++     V FK S  L++ 
Sbjct: 61 MNPRTGEKVQVKANATVRFKPSPALREA 88


>gi|242309055|ref|ZP_04808210.1| conserved hypothetical protein [Helicobacter pullorum MIT
          98-5489]
 gi|239524479|gb|EEQ64345.1| conserved hypothetical protein [Helicobacter pullorum MIT
          98-5489]
          Length = 96

 Score = 71.5 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSR 62
          + +S+ V  + +     ++K++ + ++     I  +   +  ++++  F  F    +  +
Sbjct: 1  MNKSEFVDLVKQVGEYETKKEAEKAISAFVAAIEKALSKKDGSVELVGFGKFETVLQKGK 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           G    TN++ K   + V  FKA   LK  +    +
Sbjct: 61 EGTVPGTNKKYKTKDKFVPKFKAGKGLKDAVAAAKK 96


>gi|313681742|ref|YP_004059480.1| histone family protein DNA-binding protein [Sulfuricurvum
          kujiense DSM 16994]
 gi|313154602|gb|ADR33280.1| histone family protein DNA-binding protein [Sulfuricurvum
          kujiense DSM 16994]
          Length = 94

 Score = 71.5 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 35/91 (38%), Gaps = 1/91 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + ++  V+ + K     ++ ++   +      +  + V  E + +  F +F    +  + 
Sbjct: 1  MNKAQFVELVQKSGSYKTKVEAETAIKAFTEAVTAALVAKEEVSLVGFGSFTSTLQKGKS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          G+   T++      + V  FK    LK  + 
Sbjct: 61 GKVPGTSKTYSTKDKMVPKFKPGKSLKDSVE 91


>gi|304382714|ref|ZP_07365206.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
 gi|304336165|gb|EFM02409.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
          Length = 338

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 39/91 (42%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T  DL K++ ++  L  KD+  F+  L   + +       +KI    TF V +   R  
Sbjct: 2  MTIKDLAKALVEKHDLREKDAEEFIDLLIEILYEGLRTDRLVKIKGLGTFKVMEVKERES 61

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           ++ T + V ID    + F   + ++  +  
Sbjct: 62 ISVNTGERVVIDGHDRITFTPDATMRDLVNK 92


>gi|212693203|ref|ZP_03301331.1| hypothetical protein BACDOR_02713 [Bacteroides dorei DSM 17855]
 gi|212664308|gb|EEB24880.1| hypothetical protein BACDOR_02713 [Bacteroides dorei DSM 17855]
          Length = 59

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 29/57 (50%)

Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          +      G  I I  F TF VK+K  R+  N  T Q + I P+ V+ +K S  LK++
Sbjct: 1  MTQELQDGNNIVIQGFGTFEVKKKLERISINPATQQRMLIPPKLVLTYKPSVTLKEK 57


>gi|209884160|ref|YP_002288017.1| histone family protein DNA-binding protein [Oligotropha
          carboxidovorans OM5]
 gi|209872356|gb|ACI92152.1| histone family protein DNA-binding protein [Oligotropha
          carboxidovorans OM5]
          Length = 99

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK- 59
          M+  +T+S L++ I++   LS++D    + +L         +     +  FA F V +K 
Sbjct: 1  MATQMTKSQLIEKIAETNELSKRDVKGVLESLATLGYKELKKNGVFLVPGFAKFVVIKKP 60

Query: 60 --GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
             +R G N  T + +       R++V  +     K  +
Sbjct: 61 ATKARKGTNPFTGEPMTFKAKPARKIVRARPVKAAKDAV 99


>gi|253565662|ref|ZP_04843117.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251945941|gb|EES86348.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 483

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 43/94 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  DLV+ +     +S++D+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNEKLTIQDLVELLVNRHEVSQEDADVFVREFFLLIEQALDADQYVKIKGLGTFKLIGVN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          SR   N+ T + +KI+    + F     L+  I 
Sbjct: 61 SRESVNVNTGERIKIEEHTKISFTPDPSLRDIIN 94


>gi|149921263|ref|ZP_01909719.1| DNA-binding protein HU [Plesiocystis pacifica SIR-1]
 gi|149817923|gb|EDM77385.1| DNA-binding protein HU [Plesiocystis pacifica SIR-1]
          Length = 241

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 11/102 (10%)

Query: 5   ITRSDLVKSISKEFGL----SRKDSTRFVTTLFNEICDSAVRGE-------AIKISSFAT 53
           +T+++L+  I++   L    ++K   + +   F+E+    VR               F T
Sbjct: 1   MTKAELIDRIARNRDLPPEVTKKVIAQILDLAFSELSTYFVRTRLTRSSTPRFTFPKFGT 60

Query: 54  FHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           +  K +  R G N +T + + I+    + FK S+ LK+ + +
Sbjct: 61  WTKKTRSGRRGVNPRTLEPMDIEACDTIDFKPSAELKRLLNE 102


>gi|83319548|ref|YP_424760.1| DNA-binding protein HU [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|83283434|gb|ABC01366.1| DNA-binding protein HU [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 208

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 5   ITRSDLVKSISKE---FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +T+  L++ + ++     +++          F     +   G+ + ++ F  F   +K +
Sbjct: 115 VTKGMLLEELYEDPEFVEMTKVSIKTIFDKAFIVASKNLAAGDHVVLAKFGKFETIEKEA 174

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           ++  N  T +E+++   +VV FK S  +K+++  
Sbjct: 175 QMKMNPSTQEEIEVPAHKVVKFKLSKSIKEKMNK 208


>gi|197294200|ref|YP_001798741.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
 gi|197294218|ref|YP_001798759.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
 gi|197294452|ref|YP_001798993.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
 gi|171853527|emb|CAM11377.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
 gi|171853545|emb|CAM11405.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
 gi|171853779|emb|CAM11711.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
          Length = 105

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 11  VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKI-SSFATFHVKQKGSRVGRNLQT 69
           +K+++     S   +  F  +  N + ++    E + I      F +K + +  GRN QT
Sbjct: 16  IKNLAVMNNTSVTQTQDFYNSFENALIEAIKSNEEVIISPKIGKFILKSRKAHKGRNPQT 75

Query: 70  NQEVKIDPRRVVVFKASSILKKRIMD 95
            +++KI  + VV FK S  LK  + +
Sbjct: 76  GKKLKIPAKTVVNFKLSKTLKDEVKN 101


>gi|325269257|ref|ZP_08135876.1| putative integration host factor IHF alpha subunit [Prevotella
          multiformis DSM 16608]
 gi|324988486|gb|EGC20450.1| putative integration host factor IHF alpha subunit [Prevotella
          multiformis DSM 16608]
          Length = 420

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 7/98 (7%)

Query: 1  MSKT---ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          M KT   +    +  +++K++ LS  D++ FV ++F  I      G  +K+    TF ++
Sbjct: 1  MGKTGIQM----ITGALAKQYKLSASDASVFVDSVFAIISSELKDGRPVKVKGLGTFKIQ 56

Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
              R   N+ T + V I     + F   + +K+ +  
Sbjct: 57 SVKPRESVNVNTGERVLIKGHDKITFTPDAAMKELVNK 94


>gi|148255421|ref|YP_001240006.1| DNA-binding protein HU [Bradyrhizobium sp. BTAi1]
 gi|146407594|gb|ABQ36100.1| DNA-binding protein HU [Bradyrhizobium sp. BTAi1]
          Length = 100

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 6/100 (6%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK- 59
           M+  +++S L++ I+    LS++D    + TL +       +     +  FA F V +K 
Sbjct: 1   MATQLSKSQLIEKIATTTELSKRDVKNVMETLTDVGHKELKKNGVFLVPGFAKFVVVKKP 60

Query: 60  --GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94
              +R G N  T +E+       R++V  +     K  + 
Sbjct: 61  AVKARKGTNPFTGEEMMFKAKPARKIVRARPVKAAKDAVA 100


>gi|153839871|ref|ZP_01992538.1| integration host factor beta-subunit [Vibrio parahaemolyticus
          AQ3810]
 gi|149746604|gb|EDM57592.1| integration host factor beta-subunit [Vibrio parahaemolyticus
          AQ3810]
          Length = 89

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5  ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          +T+S+L++ + +++  LS K+    V  +   +  +   G+ I+I  F +F
Sbjct: 1  MTKSELIERLCAEQTHLSAKEVEDAVKDILEHMASTLESGDRIEIRGFGSF 51


>gi|218129617|ref|ZP_03458421.1| hypothetical protein BACEGG_01194 [Bacteroides eggerthii DSM
          20697]
 gi|255009041|ref|ZP_05281167.1| histone-like DNA-binding protein HU-alpha [Bacteroides fragilis
          3_1_12]
 gi|217988347|gb|EEC54670.1| hypothetical protein BACEGG_01194 [Bacteroides eggerthii DSM
          20697]
          Length = 65

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 27/64 (42%)

Query: 33 FNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
             + +S + G  + +  F +F +KQ+  +  RN+  N  + I    V  FK +      
Sbjct: 1  MESVRESMIAGNEVFLRGFGSFIIKQRAEKKARNISKNTTIVIPAHSVPAFKPAKTFLDA 60

Query: 93 IMDD 96
          + + 
Sbjct: 61 VKEG 64


>gi|255018442|ref|ZP_05290568.1| non-specific DNA-binding protein HU [Listeria monocytogenes FSL
          F2-515]
          Length = 42

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 53 TFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           F V+++ +R GRN +T +E+ I   +V  FK    LK+ + 
Sbjct: 1  NFEVRERAARKGRNPRTKEEIDIPASKVPAFKPGKALKEAVK 42


>gi|58698152|ref|ZP_00373074.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225629919|ref|YP_002726710.1| DNA-binding protein, HU family [Wolbachia sp. wRi]
 gi|225677271|ref|ZP_03788254.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|58535302|gb|EAL59379.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225590691|gb|EEH11935.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225591900|gb|ACN94919.1| DNA-binding protein, HU family [Wolbachia sp. wRi]
          Length = 103

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 5   ITRSDLVKSI-----SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +++ D++K +     S+   +++ D ++        I +       I++    TF     
Sbjct: 1   MSKEDIIKQLKEDCSSQNIDITKSDLSKIHDAFIKIIKNELHGKGEIRLHGIGTFSTAIS 60

Query: 60  GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
             +  RN Q+ + + +  +  V FKAS  L   + +  +  
Sbjct: 61  QEKQCRNPQSGEIMTVPKKTRVKFKASQTLLSILNEKEKAA 101


>gi|197294765|ref|YP_001799306.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
 gi|171854092|emb|CAM12072.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
          Length = 105

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 11  VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS-SFATFHVKQKGSRVGRNLQT 69
           +K+++     S   +  F  +  N + ++    E + IS     F +K + +  GRN QT
Sbjct: 16  IKNLAVMNNTSVTQTQDFYNSFENALIEAIKSNEEVIISPKIGKFILKSRKAHKGRNPQT 75

Query: 70  NQEVKIDPRRVVVFKASSILKKRIMD 95
            +++KI  + VV FK S  LK  + +
Sbjct: 76  GKKLKIPAKTVVNFKLSKTLKDDVKN 101


>gi|315608921|ref|ZP_07883893.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315249301|gb|EFU29318.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 493

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 46/96 (47%), Gaps = 3/96 (3%)

Query: 2  SKTITR---SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
           K + R   ++L + +S +  +S+ ++  FV  +F  + D   + + +KI SF TF +  
Sbjct: 3  GKKMNRIGITELARMLSSKHNMSQANAENFVRLMFAVVGDGLEQEKLVKIKSFGTFKMGS 62

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
             R   ++ T + + I+ R  + F   + L+  + 
Sbjct: 63 VKDRESVDVNTGERIVIEGRNKINFTPDNALRDFVN 98


>gi|253584118|ref|ZP_04861316.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251834690|gb|EES63253.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 97

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 5  ITRSDLVKSISK--EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +L K  S   +  +S+K +   +      + ++ V    +K     TF V +K  R
Sbjct: 9  MNKKELAKLYSAISQGKISQKAALEEIDIFLETMQEALVISGKVKFIKKGTFEVLKKEPR 68

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSI 88
          +  N  T + +KI PR+VV F+AS  
Sbjct: 69 IVSNPSTRELMKIYPRKVVRFRASKS 94


>gi|282878888|ref|ZP_06287652.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310]
 gi|281298887|gb|EFA91292.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310]
          Length = 458

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 5  ITR-SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + + +DL   + ++  LS+ ++  F+  L + +       + +KI    TF V    +R 
Sbjct: 1  MIKITDLASVLEEQHQLSKSEAEFFIPLLVDVLTTGLKADKQVKIKGLGTFKVTSVNARE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            ++ T + + I+ R  + F    IL+ ++ 
Sbjct: 61 SVDVNTGERIIIEGREKISFTPEPILRDKVN 91


>gi|265764038|ref|ZP_06092606.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256646|gb|EEZ27992.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 483

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 43/94 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  DLV+ +     +S++D+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNEKLTIQDLVELLVNRHEVSQEDADVFVREFFLLIEQALDADQYVKIKGLGTFKLIGVN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          SR   N+ T + +KI+    + F     L+  I 
Sbjct: 61 SRESVNVNTGERIKIEGHTKISFTPDPSLRDIIN 94


>gi|167763122|ref|ZP_02435249.1| hypothetical protein BACSTE_01491 [Bacteroides stercoris ATCC
          43183]
 gi|167699462|gb|EDS16041.1| hypothetical protein BACSTE_01491 [Bacteroides stercoris ATCC
          43183]
          Length = 59

 Score = 70.3 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 30/57 (52%)

Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          +      G  I I  F TF VK+K  R+  N  T Q + + P+ V+ +K S++LK +
Sbjct: 1  MTRQLEEGNMISIQGFGTFEVKKKAERISVNPTTKQRMLVPPKLVLTYKPSTLLKDK 57


>gi|301163423|emb|CBW22974.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 483

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 43/94 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  DLV+ +     +S++D+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNEKLTIQDLVELLVNRHEVSQEDADVFVREFFLLIEQALDADQYVKIKGLGTFKLIGVN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          SR   N+ T + +KI+    + F     L+  I 
Sbjct: 61 SRESVNVNTGERIKIEGHTKISFTPDPSLRDIIN 94


>gi|330995098|ref|ZP_08319015.1| DNA-binding protein HU [Paraprevotella xylaniphila YIT 11841]
 gi|329576674|gb|EGG58177.1| DNA-binding protein HU [Paraprevotella xylaniphila YIT 11841]
          Length = 495

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 4/95 (4%)

Query: 5  ITRSDLVKSISK----EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          + +  L++ ++       GL +KD+  FV ++F  I +     + +K+    TF +    
Sbjct: 1  MDKKVLIQDLADGLVLRRGLPKKDADVFVRSVFEIIGEYLQTDKIVKVKGLGTFKLVTVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR   ++ T + + I     V F    +L+  +  
Sbjct: 61 SRESVDVNTGERIVIKEYTKVNFTPDPVLRDAVNK 95


>gi|218131132|ref|ZP_03459936.1| hypothetical protein BACEGG_02737 [Bacteroides eggerthii DSM
          20697]
 gi|217986652|gb|EEC52986.1| hypothetical protein BACEGG_02737 [Bacteroides eggerthii DSM
          20697]
          Length = 59

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 30/57 (52%)

Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          +      G  I I  F TF VK+K  R+  N  T Q + + P+ V+ +K S++LK +
Sbjct: 1  MTRQLEEGNVISIQGFGTFEVKKKAERISVNPTTKQRMLVPPKLVLTYKPSTLLKDK 57


>gi|58584829|ref|YP_198402.1| nucleoid DNA-binding protein [Wolbachia endosymbiont strain TRS
          of Brugia malayi]
 gi|58419145|gb|AAW71160.1| Bacterial nucleoid DNA-binding protein, HupA family [Wolbachia
          endosymbiont strain TRS of Brugia malayi]
          Length = 103

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 5  ITRSDLVKSI-----SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          +++ D++  +     S++  +++ D ++    L   I         I++    TF     
Sbjct: 1  MSKEDIINKLKQACSSQDVEITKSDLSKIFDALMKIIKGKLDEEGEIRLHGIGTFSTAIS 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            +  RN Q  + + +  +  V FKAS  L   +  +  
Sbjct: 61 QEKQCRNPQNGEIMTVPQKTRVKFKASQTLLSILNKEKE 99


>gi|53713714|ref|YP_099706.1| putative integration host factor IHF subunit alpha [Bacteroides
          fragilis YCH46]
 gi|52216579|dbj|BAD49172.1| putative integration host factor IHF alpha subunit [Bacteroides
          fragilis YCH46]
          Length = 483

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 43/94 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T  DLV+ +     +S++D+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNEKLTIQDLVELLVNRHEVSQEDADVFVREFFLLIEQALDADQYVKIKGLGTFKLIGVN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          SR   N+ T + +KI+    + F     L+  I 
Sbjct: 61 SRESVNVNTGERIKIEGHTKISFTPDPSLRDIIN 94


>gi|27381286|ref|NP_772815.1| DNA-binding protein HU 1 [Bradyrhizobium japonicum USDA 110]
 gi|27354453|dbj|BAC51440.1| hupA [Bradyrhizobium japonicum USDA 110]
          Length = 100

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 6/100 (6%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK- 59
           M   +++S L++ I+    LS++D    + TL +       +     +  FA F V +K 
Sbjct: 1   MPAQMSKSQLIEKIATATELSKRDVKSVMETLTDVGHKELKKNGLFLVPGFAKFVVIKKP 60

Query: 60  --GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94
              +R G N  T +E+       R++V  +     K  + 
Sbjct: 61  ATKARKGTNPFTGEEMMFKAKPARKIVRARPVKAAKDAVA 100


>gi|115526040|ref|YP_782951.1| histone family protein DNA-binding protein [Rhodopseudomonas
          palustris BisA53]
 gi|115519987|gb|ABJ07971.1| histone family protein DNA-binding protein [Rhodopseudomonas
          palustris BisA53]
          Length = 99

 Score = 70.3 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK- 59
          M+  +T+S L++ I+ +  L++KD    + TL         +     +  FA F V +K 
Sbjct: 1  MATQMTKSQLIEKIATKSELAKKDVKGVIETLAEIGYKELKKNGVFLVPGFAKFVVIKKP 60

Query: 60 --GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
             +R G N  T + +       R++V  +     K  +
Sbjct: 61 ATKARKGTNPFTGEAMTFKAKPARKIVRARPVKAAKDAV 99


>gi|253682948|ref|ZP_04863735.1| DNA-binding protein HU [Clostridium phage D-1873]
 gi|253560874|gb|EES90336.1| DNA-binding protein HU [Clostridium phage D-1873]
          Length = 95

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 5  ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          + +++L+  + ++       +S+KD     + +   + +       +      TF    +
Sbjct: 1  MVKTELLGRMVEKLEGKEVKVSKKDMDAIYSAVLETVAEVVKEEGKLTTP-IGTFKNTTR 59

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          G+RVGRN ++ +E++I     + FK S  +K++   
Sbjct: 60 GARVGRNPRSGEEIQIAESHALTFKQSKAVKEQFNK 95


>gi|315453214|ref|YP_004073484.1| DNA-binding protein HU [Helicobacter felis ATCC 49179]
 gi|315132266|emb|CBY82894.1| DNA-binding protein HU homolog [Helicobacter felis ATCC 49179]
          Length = 101

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 1/101 (0%)

Query: 5   ITRSDLVKSISKEFGLS-RKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + + + +  + KE G   +KD+     +    I  +  + E++++  F  F    +  + 
Sbjct: 1   MKKLEFIDLMQKEGGFKDKKDTELAFNSFIKAIEKALSQHESVELVGFGKFEAVLQKGKK 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           G+   +++      + V  FK   ILK  +    +  K  K
Sbjct: 61  GKVPGSDKTYTTKDKMVPKFKPGKILKDAVATPPKIGKKKK 101


>gi|297243580|ref|ZP_06927511.1| bacterial nucleoid DNA-binding protein [Gardnerella vaginalis
          AMD]
 gi|298253945|ref|ZP_06977532.1| bacterial nucleoid DNA-binding protein [Gardnerella vaginalis
          5-1]
 gi|296888331|gb|EFH27072.1| bacterial nucleoid DNA-binding protein [Gardnerella vaginalis
          AMD]
 gi|297532088|gb|EFH71063.1| bacterial nucleoid DNA-binding protein [Gardnerella vaginalis
          5-1]
          Length = 61

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 29/57 (50%)

Query: 37 CDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           ++   GE +K++   +    ++  R GRN +T + +KI     V   A S+LKK +
Sbjct: 3  VEALQSGEGLKLTGLFSAERVKRAERTGRNPRTGETIKIPASYGVRISAGSLLKKAV 59


>gi|42519978|ref|NP_965893.1| HU family DNA-binding protein [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|99034834|ref|ZP_01314748.1| hypothetical protein Wendoof_01000424 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|42409715|gb|AAS13827.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 103

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 5   ITRSDLVKSI-----SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           +++ D++K +     S+   +++ D ++        I +       I++    TF     
Sbjct: 1   MSKEDIIKQLKEDCSSQNIDITKSDLSKIHDAFIKIIKNELHGKGEIRLHGIGTFSTAIS 60

Query: 60  GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
             +  RN Q+ Q + +  +  V FKAS  L   + +  +  
Sbjct: 61  QEKQCRNPQSGQIMTVPKKTRVKFKASQTLLSILNEKEKAA 101


>gi|329963576|ref|ZP_08301055.1| putative DNA-binding protein HU [Bacteroides fluxus YIT 12057]
 gi|328528565|gb|EGF55536.1| putative DNA-binding protein HU [Bacteroides fluxus YIT 12057]
          Length = 59

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 30/57 (52%)

Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          +      G  I I  F TF VK+K  R+  N  T Q + + P+ V+ +K S++LK +
Sbjct: 1  MTRQLEEGNVISIQGFGTFEVKKKAERISVNPTTRQRMLVPPKLVLTYKPSTLLKDK 57


>gi|330968518|gb|EGH68778.1| HU family DNA-binding protein [Pseudomonas syringae pv.
          actinidiae str. M302091]
          Length = 58

 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 38 DSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          D    G  I +       V ++ +R GRN  T   ++I  ++V+ F  + +L   I  
Sbjct: 1  DQLENGVEITLPGIGKLKVAERPARTGRNPSTGAAIEIAAKKVIKFVPAKVLTDSINK 58


>gi|303235570|ref|ZP_07322177.1| DNA-binding protein HU [Prevotella disiens FB035-09AN]
 gi|302484017|gb|EFL47005.1| DNA-binding protein HU [Prevotella disiens FB035-09AN]
          Length = 408

 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 5  ITRSDL---VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + ++ L     +++K+  L+ K+S +FV+ LF  I +     +  K+    TF V+    
Sbjct: 1  MAKTALQLVADAVAKKHKLTIKESEKFVSQLFEVIQEGLHEDKIAKVKGLGTFKVQAVKP 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          R   N+ T + V I     V F   + +K+ +  
Sbjct: 61 RESINVNTGKRVLIAGHDKVSFTPDAAMKELVNK 94


>gi|71028204|ref|XP_763745.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350699|gb|EAN31462.1| hypothetical protein, conserved [Theileria parva]
          Length = 167

 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 35/98 (35%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
           + D+V  + +    ++K+  + V    + I         + +  F  F    +G R  RN
Sbjct: 64  KRDIVSEVGERLNKTQKEVGQVVDEFLSSIKRHLSNDAEVSLPRFGVFKNSMRGERRMRN 123

Query: 67  LQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           LQT +     P  V   +     K  +   ++ +    
Sbjct: 124 LQTGEIFTAKPVHVPTLRFYDTFKAELNHKLKTKDKRN 161


>gi|115525842|ref|YP_782753.1| histone family protein DNA-binding protein [Rhodopseudomonas
          palustris BisA53]
 gi|115519789|gb|ABJ07773.1| histone family protein DNA-binding protein [Rhodopseudomonas
          palustris BisA53]
          Length = 99

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 6/99 (6%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK- 59
          M+  +T+S L++ I+ +  L+++D    +  +         +     +  FA F V +K 
Sbjct: 1  MATQLTKSQLIEKIATQTELAKRDVKGVLEAMSEIGYKELKKNGLFLVPGFAKFVVIKKP 60

Query: 60 --GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
             +R G N  T + +       R++V  +     K  +
Sbjct: 61 ATKARKGTNPFTGEPMVFKAKPARKIVRARPVKAAKDAV 99


>gi|307564882|ref|ZP_07627407.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
 gi|307346418|gb|EFN91730.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
          Length = 89

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV- 63
          + +++++  +     L+R  + +    + N I  S ++GE + +  FAT  V     RV 
Sbjct: 1  MKKNEILSEVIDATDLTRSQAVKAYEAIINAIKKSLIKGEDVTLRGFATLKVVHVKERVS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          G +    ++  I   + V  KA   LKK I  
Sbjct: 61 GLH---GKKTVIPAHKTVKIKACQELKKLINK 89


>gi|322379007|ref|ZP_08053410.1| DNA-binding protein hu [Helicobacter suis HS1]
 gi|322380772|ref|ZP_08054878.1| dna-binding protein hu [Helicobacter suis HS5]
 gi|321146776|gb|EFX41570.1| dna-binding protein hu [Helicobacter suis HS5]
 gi|321148499|gb|EFX42996.1| DNA-binding protein hu [Helicobacter suis HS1]
          Length = 105

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 39/90 (43%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +++ V+ + +     SRKD+   +      +  +    E++++  F  F V  +  + 
Sbjct: 1  MKKAEFVELMKEAGSFDSRKDAEFALDGFVRAVQKALSTHESVELVGFGKFEVALQKGKS 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          G+   +++      + V  FK   +LK  +
Sbjct: 61 GKVPGSDKTYMTKDKMVPKFKPGKVLKDIV 90


>gi|187251516|ref|YP_001875998.1| DNA-binding protein [Elusimicrobium minutum Pei191]
 gi|186971676|gb|ACC98661.1| Bacterial DNA-binding protein [Elusimicrobium minutum Pei191]
          Length = 86

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + D+V  ++    L +K S + V  +F  I +  +R   + IS+F TF + +  + V 
Sbjct: 1  MKKEDIVNRLALSL-LDKKQSKQTVEEVFAIIKEGLLRDGKVTISNFGTFKLVRTKAAVR 59

Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86
           N +T + V +  +  V FK+S
Sbjct: 60 HNPKTLERVNVPAKTKVRFKSS 81


>gi|317062728|ref|ZP_07927213.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688404|gb|EFS25239.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 106

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 30/73 (41%)

Query: 24  DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVF 83
           ++ + V   F+ +     + E +    +  F ++ +  R   N +T + + I  ++V+ F
Sbjct: 34  EAKKRVKVFFDTLKQVIDKDEKVIFKDWGKFEIEHREQRTYGNPRTKERIIIPAKKVLKF 93

Query: 84  KASSILKKRIMDD 96
                   R+ + 
Sbjct: 94  TVGKKFADRVKNS 106


>gi|125624460|ref|YP_001032943.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|124493268|emb|CAL98235.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|300071248|gb|ADJ60648.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris
          NZ9000]
          Length = 101

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 34/66 (51%)

Query: 25 STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84
          + + +      I      G  + IS+F TF V+++ +R+  ++ + +++ +  + + VF+
Sbjct: 3  AAKAINAFVEAITYYISEGATVHISNFGTFEVRKRAARISHDVHSREKILVGEQNIPVFR 62

Query: 85 ASSILK 90
          A   LK
Sbjct: 63 AGKALK 68


>gi|329954833|ref|ZP_08295850.1| DNA-binding protein HU [Bacteroides clarus YIT 12056]
 gi|328526937|gb|EGF53948.1| DNA-binding protein HU [Bacteroides clarus YIT 12056]
          Length = 59

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 30/57 (52%)

Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          +      G  I +  F TF VK+K  R+  N  T Q + + P+ V+ +K S++LK +
Sbjct: 1  MTRQLEDGNTISVQGFGTFEVKKKAERISVNPTTKQRMLVPPKLVLTYKPSTLLKDK 57


>gi|119490325|ref|ZP_01622803.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106]
 gi|119453984|gb|EAW35138.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106]
          Length = 176

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 27/71 (38%)

Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV 73
          I K  G S       + +    I      G  +KI  F  F+ K+   R  RN +T + +
Sbjct: 6  IQKSTGFSEGIVNAVIDSFIKFIQLELRSGNEVKIPDFGVFYSKELPERQSRNPRTGESI 65

Query: 74 KIDPRRVVVFK 84
             P+    F+
Sbjct: 66 IAKPKTKPKFR 76


>gi|257468465|ref|ZP_05632559.1| histone family protein DNA-binding protein [Fusobacterium
          ulcerans ATCC 49185]
          Length = 97

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 30/73 (41%)

Query: 24 DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVF 83
          ++ + V   F+ +     + E +    +  F ++ +  R   N +T + + I  ++V+ F
Sbjct: 25 EAKKRVKVFFDTLKQVIDKDEKVIFKDWGKFEIEHREQRTYGNPRTKERIIIPAKKVLKF 84

Query: 84 KASSILKKRIMDD 96
                  R+ + 
Sbjct: 85 TVGKKFADRVKNS 97


>gi|330938918|gb|EGH42423.1| HU family DNA-binding protein [Pseudomonas syringae pv. pisi str.
          1704B]
          Length = 68

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  L+  I++     +  +   +  L   + D    G  I +       V ++ +R 
Sbjct: 2  ALTKDQLIADIAEAIDAPKTTARNALEQLGQIVADQLENGVEITLPGIGKLKVAERPART 61

Query: 64 GRNLQTN 70
          GRN  T 
Sbjct: 62 GRNPSTG 68


>gi|284931152|gb|ADC31090.1| Histone-like DNA-binding superfamily protein HimA/HU/Integration
           host factor [Mycoplasma gallisepticum str. F]
          Length = 123

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 1/102 (0%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+S++ K I++  G+S K          + +         +++    TF V     R+ 
Sbjct: 2   LTKSEICKIIAECTGVSPKLVKACFQVYSDLVKKEIKSQGQVRLPELGTFRVTIGRERIS 61

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
            N  T  + +I P+  V F+A+  LK+ +   ++ +  ++DD
Sbjct: 62  VNPITGAQTRIPPKPKVKFRAAKPLKE-VTATIKWKYVSEDD 102


>gi|90425234|ref|YP_533604.1| histone-like DNA-binding protein [Rhodopseudomonas palustris
          BisB18]
 gi|90107248|gb|ABD89285.1| histone-like DNA-binding protein [Rhodopseudomonas palustris
          BisB18]
          Length = 99

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK- 59
          M+  +T+S L++ I+ +  L++KD    +  +         +     +  FA F V +K 
Sbjct: 1  MATQMTKSQLIEKIATQSELAKKDVKGVLEAMTEIGYKELKKNGVFLVPGFAKFVVIKKP 60

Query: 60 --GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
             +R G N    + +       R++V  +     K  +
Sbjct: 61 ATKARKGTNPFNGEPMVFKAKPARKIVRARPVKAAKDSV 99


>gi|298385675|ref|ZP_06995233.1| integration host factor IHF alpha subunit [Bacteroides sp.
          1_1_14]
 gi|298261816|gb|EFI04682.1| integration host factor IHF alpha subunit [Bacteroides sp.
          1_1_14]
          Length = 466

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
          +++KD+  FV   F  I  +    + +KI    TF +    SR   N+ T +  +I    
Sbjct: 1  MTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLVDVDSRESVNVNTGERFQIKGHT 60

Query: 80 VVVFKASSILKKRIMD 95
           V F   + L+  I  
Sbjct: 61 KVSFTPDTNLRDTINK 76


>gi|31544347|ref|NP_852925.1| histone-like DNA-binding superfamily protein HimA/HU/Integration
           host factor [Mycoplasma gallisepticum str. R(low)]
 gi|31541191|gb|AAP56493.1| Histone-like DNA-binding superfamily protein HimA/HU/Integration
           host factor [Mycoplasma gallisepticum str. R(low)]
 gi|284930387|gb|ADC30326.1| Histone-like DNA-binding superfamily protein HimA/HU/Integration
           host factor [Mycoplasma gallisepticum str. R(high)]
          Length = 118

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 1/102 (0%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+S++ K I++  G+S K          + +         +++    TF V     R+ 
Sbjct: 2   LTKSEICKIIAECTGVSPKLVKACFQVYSDLVKKEIKSQGQVRLPELGTFRVTIGRERIS 61

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106
            N  T  + +I P+  V F+A+  LK+ +   ++ +  ++DD
Sbjct: 62  VNPITGAQTRIPPKPKVKFRAAKPLKE-VTATIKWKYVSEDD 102


>gi|119494127|ref|ZP_01624637.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106]
 gi|119452166|gb|EAW33370.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106]
          Length = 177

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 29/71 (40%)

Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV 73
          I    G S       V +L   +      G  +KI  F  F+ K+ GSR  RN +T + +
Sbjct: 6  IQNSTGFSEATVQAVVDSLIKFVQLELRSGNEVKIPDFGVFYPKELGSRPSRNPRTGESI 65

Query: 74 KIDPRRVVVFK 84
             P+    F+
Sbjct: 66 IAKPKTKPKFR 76


>gi|253581429|ref|ZP_04858654.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251836499|gb|EES65034.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 97

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 30/73 (41%)

Query: 24 DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVF 83
          ++ + V   F+ +       E +    +  F ++ +  R+  N +T + + I  +RV+ F
Sbjct: 25 EAKKRVKVFFDTLKQVIDENEKVIFKDWGKFEIEHREQRIYGNPKTKERIVIPAKRVLKF 84

Query: 84 KASSILKKRIMDD 96
                  R+ + 
Sbjct: 85 TVGKKFADRVKNS 97


>gi|237752734|ref|ZP_04583214.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
          BAA-430]
 gi|229376223|gb|EEO26314.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
          BAA-430]
          Length = 98

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S+ V  + +     ++KD+ + +      +  +  + E+I++  F  F    +  + 
Sbjct: 1  MNKSEFVDLVKEVGEFETKKDAEKAIGAFTAAVEKALAKKESIELVGFGKFETVLQKGKE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSIL 89
          G    T ++ K   + V  FKA   L
Sbjct: 61 GTVPGTTKKYKTQDKFVPKFKAGKGL 86


>gi|302336640|ref|YP_003801846.1| histone family protein DNA-binding protein [Spirochaeta smaragdinae
           DSM 11293]
 gi|301633825|gb|ADK79252.1| histone family protein DNA-binding protein [Spirochaeta smaragdinae
           DSM 11293]
          Length = 292

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           T+  +   I+    L++    R +   F+ +    + GE + + S      + +     R
Sbjct: 188 TKDRMAAYIAGRNDLTQLQVRRILDDFFSVVESGIMLGERVSLGSLGKIGYRVRPPSKAR 247

Query: 66  N---LQTNQEVKIDP---RRVVVFKASSILKKR 92
                 T +E+ I     R VV F  S  LK+R
Sbjct: 248 IITVPATGEEMTIPAKPSRAVVKFSPSGRLKER 280


>gi|332879556|ref|ZP_08447251.1| DNA-binding protein HU [Capnocytophaga sp. oral taxon 329 str.
          F0087]
 gi|332682522|gb|EGJ55424.1| DNA-binding protein HU [Capnocytophaga sp. oral taxon 329 str.
          F0087]
          Length = 494

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 4/95 (4%)

Query: 5  ITRSDLVKSISK----EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          + +  L++ ++       GL +KD+  FV ++F  I +     + +K+    TF +    
Sbjct: 1  MDKKVLIQDLADGLVLRRGLPKKDADVFVRSVFEIIGEYLQTDKIVKVKGLGTFKLVTVD 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          SR   ++ T + + I     + F    +L+  +  
Sbjct: 61 SRESVDVNTGERIVIKEYTKINFTPDPVLRDAVNK 95


>gi|288927532|ref|ZP_06421379.1| integration host factor IHF alpha subunit [Prevotella sp. oral
          taxon 317 str. F0108]
 gi|288330366|gb|EFC68950.1| integration host factor IHF alpha subunit [Prevotella sp. oral
          taxon 317 str. F0108]
          Length = 638

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 4/99 (4%)

Query: 1  MSKTITRS----DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          M   +       +L  ++  +  LS K++  FV T+F+ +       + +K+    TF V
Sbjct: 1  MEVKMNNRVGIRELAMALVNKNKLSLKEAENFVATMFDTLNVGLNDDKQVKLKGLGTFKV 60

Query: 57 KQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
              +R   ++ T + + ID R  + F   S +K  +  
Sbjct: 61 MSVSARKSVDVNTGEPIIIDGRDKISFTPDSTMKDLVNK 99


>gi|317064750|ref|ZP_07929235.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690426|gb|EFS27261.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 92

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 1  MSKTITRSDLVKSISKEFGL---SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          M   + + +L   +  +  L   S+  +   +   F  + ++ V    +K     TF + 
Sbjct: 1  MVIQMNKRELT-KLYIKLSLCPISQNKAKEEIEEFFETLKEAIVIDGKVKFPKIGTFEIL 59

Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
           +  R   N  T + + I P++++ F+AS  +K
Sbjct: 60 TRQPRKVSNPVTRELMTIYPKKIIKFRASKKIK 92


>gi|294673497|ref|YP_003574113.1| HU family DNA-binding protein [Prevotella ruminicola 23]
 gi|294472549|gb|ADE81938.1| DNA-binding protein, HU family/extensin domain protein
          [Prevotella ruminicola 23]
          Length = 472

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 41/87 (47%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          +L   + +   ++R+D++ FV+ +F+ +       + +K+    TF +     R   N+ 
Sbjct: 8  ELANVLVERRKMNRRDASLFVSAMFDIVQQRLETDKLVKVKGLGTFKIIDVEDRESVNVN 67

Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMD 95
          T + V I+    + F   ++LK+ +  
Sbjct: 68 TGERVLIEGHGKITFVPDALLKELVNK 94


>gi|300727619|ref|ZP_07061008.1| DNA-binding protein HU [Prevotella bryantii B14]
 gi|299775139|gb|EFI71742.1| DNA-binding protein HU [Prevotella bryantii B14]
          Length = 521

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 40/87 (45%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          +L K +     LS  D+ +FV  +F+ + +     + +KI  F TF V     R   ++ 
Sbjct: 8  ELAKVLVNTHKLSVDDAEQFVRLMFDTVNEGLQEDKQVKIKGFGTFKVLSVKDRESVDVN 67

Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMD 95
          T + + I+ R  + F   +I+K  +  
Sbjct: 68 TGERIIIEGRDKISFTPDAIVKDIVNK 94


>gi|530471|emb|CAA83809.1| DNA-bind. protein HU [Mycoplasma capricolum subsp. capricolum
          ATCC 27343]
          Length = 90

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 10 LVKSISKE---FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          L++ + ++     +++          F     +   G+ + ++ F  F   +K +++  N
Sbjct: 2  LLEELYEDPEFVEMTKVSIKTIFDKAFIVASKNLAAGDHVVLAKFGKFETIEKEAQMKMN 61

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            T +E+++   +VV FK S  +K+++  
Sbjct: 62 PSTQEEIEVPAHKVVKFKLSKSIKEKMNK 90


>gi|253583307|ref|ZP_04860505.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251833879|gb|EES62442.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 89

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 45/88 (51%), Gaps = 4/88 (4%)

Query: 5  ITRSDLV---KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + + +L     +IS +  +S+K +   +      + ++ ++ +++   +   F + ++  
Sbjct: 1  MNKRELARIYNTIS-QGKISQKAALEEINIFTQTLQEALMKYDSVTFVNIGIFEILERKP 59

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSIL 89
          R+  N  T + +KI P++VV F+AS  L
Sbjct: 60 RLVSNPSTREIMKIYPKKVVRFRASKNL 87


>gi|161789239|ref|YP_001595601.1| histone-like DNA-binding protein [Vibrio sp. 23023]
 gi|161761364|gb|ABX77010.1| Histone-like DNA-binding protein [Vibrio sp. 23023]
          Length = 98

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  IS ++ L  K        +F+E+  + +  E+I+I     F +K +  ++ 
Sbjct: 1  MNKVELIARISSKYDLDEKRVRVLADVIFDEMAKALLDRESIEIPELGDFWIKTRPEKLS 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N +  Q + I  +  V FK    L+K + 
Sbjct: 61 EN-RRGQVITIREKHAVRFKPVIQLRKALN 89


>gi|254511061|ref|ZP_05123128.1| DNA-binding protein HU [Rhodobacteraceae bacterium KLH11]
 gi|221534772|gb|EEE37760.1| DNA-binding protein HU [Rhodobacteraceae bacterium KLH11]
          Length = 78

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 31/78 (39%)

Query: 18 FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDP 77
           G  +K +   +  +   I      G A+ +      + +++  R+ RN  T ++ K + 
Sbjct: 1  MGTDKKSANAALEAMTGLITREVSAGGAVTLPGVGKIYCRERPERMVRNPATGEQFKKEA 60

Query: 78 RRVVVFKASSILKKRIMD 95
           +VV    +  LK  +  
Sbjct: 61 DKVVKMTIAKALKDSVNG 78


>gi|261879548|ref|ZP_06005975.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333774|gb|EFA44560.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 494

 Score = 67.2 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 3/93 (3%)

Query: 5  ITR---SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + +    +L + +  +FGL R  S  FV  +F+ + D        KI    TF + +   
Sbjct: 1  MNKIGNKELARLLVDKFGLDRAASEDFVRLIFDVVNDGLKDDSQAKIKGLGTFKITRVAP 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          R   ++ T + + I+ R  + F A   ++ ++ 
Sbjct: 61 RKSVDVNTGEPIIIEGRDKMSFTADVSMRNQVN 93


>gi|297182787|gb|ADI18941.1| hypothetical protein [uncultured SAR11 cluster bacterium
          HF0010_09O16]
          Length = 97

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 7  RSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          +S+++K + K       K  ++ V T+  EI +S  R E+ +I  F  +  K +   + R
Sbjct: 5  KSEIIKQLKKSYPNFENKILSKIVDTILKEIKESLKRNESCEIRKFGRWSTKIQKPSIRR 64

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          N ++ Q+V I+ ++VV +K S  L +++ +D  
Sbjct: 65 NPKSGQKVHINAKKVVRWKMSKELFRKLNNDEE 97


>gi|253578052|ref|ZP_04855324.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850370|gb|EES78328.1| predicted protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 97

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 40/97 (41%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +TRS++++  S+    S + +   V T+   I +   +   + +  F  F ++   +  G
Sbjct: 1   MTRSEMIRRYSEIQCCSYEMAADAVDTVVTLISEGLEQDGKVSLKYFGRFEIRPFKAHRG 60

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
            +    + ++I     + F      +K ++     +K
Sbjct: 61  YDFSKGESIEIPAHNTIRFTPCEAWRKEVLRKEIVKK 97


>gi|315185584|gb|EFU19353.1| histone family protein DNA-binding protein [Spirochaeta thermophila
           DSM 6578]
          Length = 291

 Score = 66.9 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK---QKGSRVGRN 66
           +   +S+  GL +K     +      +    + GE +++ +  +F +     + +RV R+
Sbjct: 188 ITSYLSRRHGLPQKAVKELLADYLTLVEAGVLMGERVRLGNLGSFSLTVRPPRKARVMRH 247

Query: 67  LQTNQEVKIDPR---RVVVFKASSILKKR 92
             T  E+ +  +    V  FK S   K++
Sbjct: 248 PATGGEILVPAQPAIAVPRFKPSRSFKEK 276


>gi|193214623|ref|YP_001995822.1| histone family protein DNA-binding protein [Chloroherpeton
           thalassium ATCC 35110]
 gi|193088100|gb|ACF13375.1| histone family protein DNA-binding protein [Chloroherpeton
           thalassium ATCC 35110]
          Length = 115

 Score = 66.9 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 5/100 (5%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE---AIKISSFATFHVK- 57
           S+T+TR DL+K ++K    S      FV      +       +    I++     F VK 
Sbjct: 13  SQTLTRRDLIKLVAKRTQKSEASVAEFVDVTIESLSKLIRNADDELRIELRGLGVFEVKF 72

Query: 58  QKGSRVGRNLQTNQEVKIDP-RRVVVFKASSILKKRIMDD 96
            K     R+ +T   +  +  RR V F+ S ++K+ +  +
Sbjct: 73  MKNEATVRDPRTGTIIDYEGRRRKVHFRPSKLIKRALQKE 112


>gi|160937344|ref|ZP_02084706.1| hypothetical protein CLOBOL_02234 [Clostridium bolteae ATCC
          BAA-613]
 gi|158439908|gb|EDP17657.1| hypothetical protein CLOBOL_02234 [Clostridium bolteae ATCC
          BAA-613]
          Length = 94

 Score = 66.9 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 44/92 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + +  L   I++  G  R+++T+ +  L   + D+   G  + ++      V++  ++ G
Sbjct: 1  MIKKKLAIQIAQRIGNGREETTKLLDVLCEVLGDTLDAGVFVHLTGLGRLTVREYPAQKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           + +T   + +  ++  VFKA+  LK +  + 
Sbjct: 61 FDPRTRGFINMAAKKSPVFKANKSLKGKSNEA 92


>gi|257470543|ref|ZP_05634633.1| hypothetical protein FulcA4_14451 [Fusobacterium ulcerans ATCC
          49185]
          Length = 88

 Score = 66.9 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 5  ITRSDLVKSISKEFGL---SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + + +L   +  +  L   S+  +   +   F  + ++ V    +K     TF +  +  
Sbjct: 1  MNKRELT-KLYIKLSLCPISQNKAKEEIEEFFETLKEAIVIDGKVKFPKIGTFEILTRQP 59

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          R   N  T + + I P++++ F+AS  +K
Sbjct: 60 RKVSNPVTRELMTIYPKKIIKFRASKKIK 88


>gi|212213043|ref|YP_002303979.1| DNA-binding protein [Coxiella burnetii CbuG_Q212]
 gi|212011453|gb|ACJ18834.1| bacterial DNA-binding protein [Coxiella burnetii CbuG_Q212]
          Length = 105

 Score = 66.9 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISSFATFHVKQK--- 59
           +T+S ++  +++   L++K  T     L +       +G      +       VK+K   
Sbjct: 8   MTKSQILAHLAESTELTKKQVTMIFEALSDLTHAHLKKGGAGEFVVPGLCKCSVKRKPAT 67

Query: 60  GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94
            +R G N  T + +       R VV  +    LK+ + 
Sbjct: 68  KARKGINPFTGESMTFKAKPARNVVKIRPLKRLKEMVE 105


>gi|253583929|ref|ZP_04861127.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251834501|gb|EES63064.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 95

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 44/86 (51%), Gaps = 4/86 (4%)

Query: 5  ITRSDLV---KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + + +L     +IS +  +S+K +   +      + ++ ++ +++   +   F + ++  
Sbjct: 6  MNKRELARIYNTIS-QGKISQKAALEEIDIFTQTLQEALMKYDSVTFVNIGIFEILERKP 64

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASS 87
          R+  N  T + +KI P++VV F+AS 
Sbjct: 65 RLVSNPSTREIMKIYPKKVVRFRASK 90


>gi|307718393|ref|YP_003873925.1| hypothetical protein STHERM_c06940 [Spirochaeta thermophila DSM
           6192]
 gi|306532118|gb|ADN01652.1| hypothetical protein STHERM_c06940 [Spirochaeta thermophila DSM
           6192]
          Length = 291

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK---QKGSRVGRN 66
           +   +S+   L RK     +      +    + GE +++ +  +F +     + +RV R+
Sbjct: 188 ITSYLSRRHDLPRKVVKELLADYLTLVEAGVLMGERVRLGTLGSFSLTVRPPRKARVMRH 247

Query: 67  LQTNQEVKIDPR---RVVVFKASSILKKR 92
             T  E+ +  R    V  FK S   K++
Sbjct: 248 PATGGEILVPARPALAVPRFKPSRSFKEK 276


>gi|253582857|ref|ZP_04860076.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251835291|gb|EES63833.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 90

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 5  ITRSDLVKSISK--EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +L K  SK  +  +S+K +   +      + ++ ++ +++   +   F + ++  R
Sbjct: 1  MNKRELAKIYSKISQGKVSQKAALEEINIFTQTLQEALMKYDSVTFVNIGVFEILERKPR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASS 87
          +  N  T + +KI P++VV F+AS 
Sbjct: 61 LVSNPSTREIMKIYPKKVVRFRASK 85


>gi|329942725|ref|ZP_08291504.1| bacterial DNA-binding family protein [Chlamydophila psittaci
          Cal10]
 gi|328814985|gb|EGF84974.1| bacterial DNA-binding family protein [Chlamydophila psittaci
          Cal10]
          Length = 66

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQ-EVKIDPRRVVVFKASSILKKRIM 94
          + D+ V+G+ ++   F    V ++  +VGRN +     + I  RR V F     +K+ I 
Sbjct: 1  MTDALVKGDRLEFRDFGVLQVVERKPKVGRNPKNATVPIHIPARRAVKFTPGKRMKRLIE 60


>gi|60681985|ref|YP_212129.1| hypothetical protein BF2505 [Bacteroides fragilis NCTC 9343]
 gi|60493419|emb|CAH08205.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
          Length = 483

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 42/94 (44%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T   LV+ +     +S++D+  FV   F  I  +    + +KI    TF +    
Sbjct: 1  MNEKLTIQYLVELLVNRHEVSQEDADVFVREFFLLIEQALDADQYVKIKGLGTFKLIGVN 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          SR   N+ T + +KI+    + F     L+  I 
Sbjct: 61 SRESVNVNTGERIKIEGHTKISFTPDPSLRDIIN 94


>gi|325973341|ref|YP_004250405.1| DNA-binding protein [Mycoplasma suis str. Illinois]
 gi|323651943|gb|ADX98025.1| DNA-binding protein [Mycoplasma suis str. Illinois]
          Length = 99

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 33/92 (35%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T+ +L+  IS E GL++      +                + +       + ++  R G
Sbjct: 1  MTKLELLVKISGETGLTKDQIDSVLKAYQAITIAEMKEQGEVNVLEIGKIKISRRPERKG 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           N  T + + I    V  F  S  LK+   + 
Sbjct: 61 VNFMTKEPMVIPAANVAKFSFSKKLKEAASES 92


>gi|253584284|ref|ZP_04861482.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251834856|gb|EES63419.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 94

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 5  ITRSDLVK---SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + + +L K    ISK   ++ K +   +      + ++ +    +K     TF V +K +
Sbjct: 6  MNKKELAKIYSKISKNM-INVKRAIEEIDVFLETVQEALLVDGKVKFIKRGTFEVLKKKA 64

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSIL 89
          R+  N  T + +KI P++ + FK S  L
Sbjct: 65 RIISNPSTRELMKIYPKKTIKFKISKEL 92


>gi|254448116|ref|ZP_05061579.1| bacterial DNA-binding protein [gamma proteobacterium HTCC5015]
 gi|198262242|gb|EDY86524.1| bacterial DNA-binding protein [gamma proteobacterium HTCC5015]
          Length = 116

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE--AIKISSFATFH---VKQKG 60
          T + +V  I+ + GL++ D    + +L   I     +           A F    V ++ 
Sbjct: 11 TTAQVVSYIADQTGLTKNDVKAVLDSLEEIITLHLKKKGVQKFNFLGMAQFKIDRVARRA 70

Query: 61 SRVGRNLQTNQEVKIDPR 78
          +R GRN  T +E+ I  +
Sbjct: 71 ARPGRNPATGEEITIPAK 88


>gi|67923415|ref|ZP_00516894.1| Histone-like bacterial DNA-binding protein [Crocosphaera watsonii
          WH 8501]
 gi|67854750|gb|EAM50030.1| Histone-like bacterial DNA-binding protein [Crocosphaera watsonii
          WH 8501]
          Length = 54

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 27/50 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          + + DLV  I+ +  L++K++   + +L   I ++   G+ + +  F TF
Sbjct: 1  MNKEDLVNMIAAKTRLTKKETIHILDSLTETIMETVASGDKVVLVGFGTF 50


>gi|50365246|ref|YP_053671.1| histone-like DNA-binding protein [Mesoplasma florum L1]
 gi|50363802|gb|AAT75787.1| predicted histone-like DNA-binding protein [Mesoplasma florum L1]
          Length = 271

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 1/85 (1%)

Query: 7   RSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           +  LV+ +++      +K     V  LF  + +  + GE + I +F      +K  +   
Sbjct: 159 KKYLVERLTEMYPDYKKKTIDEIVKNLFQNVENHLISGEEVIIENFGKLIKVEKPVKQAI 218

Query: 66  NLQTNQEVKIDPRRVVVFKASSILK 90
           N    + V++    ++ FK S  LK
Sbjct: 219 NPSNGEIVEVPATTIIKFKPSRNLK 243


>gi|253583855|ref|ZP_04861053.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251834427|gb|EES62990.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 89

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 5  ITRSDLVKSI--SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +L K    + +  +S K +   +      + ++ V    +K     TF V +K  R
Sbjct: 1  MNKMELAKLYIKASKSEISIKKAVEEIDIFLKTMQEALVISGKVKFMKKGTFEVLKKEPR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          +  N  T + +KI PRR V F+AS  + +
Sbjct: 61 IISNPSTRELMKIYPRRTVKFRASKSIME 89


>gi|160937268|ref|ZP_02084630.1| hypothetical protein CLOBOL_02158 [Clostridium bolteae ATCC
          BAA-613]
 gi|158439832|gb|EDP17581.1| hypothetical protein CLOBOL_02158 [Clostridium bolteae ATCC
          BAA-613]
          Length = 51

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 52 ATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99
           TF V ++  R  RN +T + V+I PRRV VF+A SILK+ ++   +G
Sbjct: 4  GTFAVAERKGRQRRNPRTGEVVEIKPRRVPVFRAGSILKREVIQGNQG 51


>gi|289829537|ref|ZP_06547133.1| integration host factor subunit alpha [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-3139]
          Length = 50

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 28/48 (58%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSF 51
           +T++++ + +  + GLS++D+   V   F EI  +   GE +K+S F
Sbjct: 2  ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGF 49


>gi|189465618|ref|ZP_03014403.1| hypothetical protein BACINT_01976 [Bacteroides intestinalis DSM
          17393]
 gi|189437892|gb|EDV06877.1| hypothetical protein BACINT_01976 [Bacteroides intestinalis DSM
          17393]
          Length = 59

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 29/57 (50%)

Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          +      G  + + SF TF VK+K  R+  N  T   + + P+ V+ ++ S+ LK +
Sbjct: 1  MTQQLQEGNIVSVQSFGTFEVKKKAERITINPTTKLRMLVPPKLVLTYRPSTTLKDK 57


>gi|297618190|ref|YP_003703349.1| histone family protein DNA-binding protein [Syntrophothermus
          lipocalidus DSM 12680]
 gi|297146027|gb|ADI02784.1| histone family protein DNA-binding protein [Syntrophothermus
          lipocalidus DSM 12680]
          Length = 100

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 5  ITRS-----DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          + R      +LVK I+ + GL +KD    +      + D+   G  +++  F TF  +++
Sbjct: 1  MNRKAIGGDELVKRIADKTGLLQKDVRAVLRAFEQVVKDALTDGYEVRLVGFGTFRTRRR 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           +R G+     +  +I    V VF     LK+ +  +  
Sbjct: 61 AARKGQI--GGRAYEIPETVVPVFAPGKGLKEAVGGETA 97


>gi|224540005|ref|ZP_03680544.1| hypothetical protein BACCELL_04917 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224518372|gb|EEF87477.1| hypothetical protein BACCELL_04917 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 59

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 30/57 (52%)

Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          +      G AI + SF TF VK+K  R+  N  T   + + P+ V+ ++ S+ LK +
Sbjct: 1  MTQQLQEGNAISVQSFGTFEVKKKAERITINPTTKLRMLVPPKLVLTYRPSTALKDK 57


>gi|257470535|ref|ZP_05634625.1| HU family DNA-binding protein [Fusobacterium ulcerans ATCC 49185]
 gi|317064742|ref|ZP_07929227.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690418|gb|EFS27253.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 96

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 5  ITRSDLVKSISKEFGLSR---KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + + D    I ++   ++   K++ + +  L   I +       +  +    F V  K +
Sbjct: 1  MNKGDFT-KIYRKMDRTKVSLKEAAKDINVLLETIKEGLKISGKVSFAKRGIFEVVDKKA 59

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          R   N  T + ++I PRR V F+ S  LK
Sbjct: 60 RNIANPSTWEIMRIKPRRTVRFRTSKPLK 88


>gi|289806659|ref|ZP_06537288.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. AG3]
          Length = 73

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          +T+S+L++ ++ ++  +  K     V  +   +  +  +GE I+I  F +F
Sbjct: 1  MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSF 51


>gi|220936085|ref|YP_002514984.1| histone family protein DNA-binding protein [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219997395|gb|ACL73997.1| histone family protein DNA-binding protein [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 118

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 8/95 (8%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RG-EAIKISSFATFHVKQK---GS 61
           +++++  I+ + GLS+KD    + +L   I  S   RG     +       V +K    +
Sbjct: 24  KTEILNHIATQTGLSKKDVGAVMDSLQGLIEKSVKPRGVGMFTLPGLLKIKVVKKPATKA 83

Query: 62  RVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
           R GRN  T +E+       R+VV       LK  I
Sbjct: 84  RKGRNPATGEEMIFKAKPARKVVKVLPLKNLKDMI 118


>gi|225851318|ref|YP_002731552.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Persephonella marina EX-H1]
 gi|225646385|gb|ACO04571.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
          [Persephonella marina EX-H1]
          Length = 92

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +T  +L   +SK   +  + + + V  +F+ +    +RG+ +++  F  F+ K + SR  
Sbjct: 1  MTYKELKIQVSKNAQVPVEVADKVVEEVFHTLKSVMLRGDRLQVPGFGVFYTKIRSSRKV 60

Query: 65 RNLQT-NQEVKIDPRRVVVFKASSILKKRIMDDM 97
             +T  +  ++  +RV VF  +  LKK I  + 
Sbjct: 61 ---KTHGEIKQLPSKRVPVFAPAKALKKEIESNT 91


>gi|281419889|ref|ZP_06250888.1| putative integration host factor IHF alpha subunit [Prevotella
          copri DSM 18205]
 gi|281406016|gb|EFB36696.1| putative integration host factor IHF alpha subunit [Prevotella
          copri DSM 18205]
          Length = 479

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 38/82 (46%)

Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV 73
          ++ + GLS+ ++  F+  +F+         + +KI    TF V+    R   N+ T +  
Sbjct: 13 LADKSGLSQVEAELFIRKMFDVCNQGLDADKQVKIKWLGTFKVQATKDRESINVNTGERF 72

Query: 74 KIDPRRVVVFKASSILKKRIMD 95
           I+ R  + F   +ILK+ +  
Sbjct: 73 TIEGRDKLTFTPDNILKEIVNK 94


>gi|154707338|ref|YP_001424941.1| DNA-binding protein [Coxiella burnetii Dugway 5J108-111]
 gi|161830030|ref|YP_001596403.1| DNA-binding protein BpH2 [Coxiella burnetii RSA 331]
 gi|215918971|ref|NP_819508.2| DNA-binding protein BpH2 [Coxiella burnetii RSA 493]
 gi|154356624|gb|ABS78086.1| bacterial DNA-binding protein [Coxiella burnetii Dugway 5J108-111]
 gi|161761897|gb|ABX77539.1| DNA-binding protein BpH2 [Coxiella burnetii RSA 331]
 gi|206583856|gb|AAO90022.2| bacterial DNA-binding protein [Coxiella burnetii RSA 493]
          Length = 129

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISSFATFHVKQK--- 59
           +T+S ++  +++   L++K  T     L +       +G      +       VK+K   
Sbjct: 32  MTKSQILAHLAESTELTKKQVTMIFEALSDLTHAHLKKGGAGEFVVPGLCKCSVKRKPAT 91

Query: 60  GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94
            +R G N  T + +       R VV  +    LK+ + 
Sbjct: 92  KARKGINPFTGESMTFKAKPARNVVKIRPLKRLKEMVE 129


>gi|88798564|ref|ZP_01114148.1| DNA-binding protein HU, putative [Reinekea sp. MED297]
 gi|88778664|gb|EAR09855.1| DNA-binding protein HU, putative [Reinekea sp. MED297]
          Length = 109

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQ---K 59
           T++ ++  I++   LS+K     +  L + I     +   GE + +         +   +
Sbjct: 13  TKTQILTEIAENTELSKKQVQSVLDELSDVIERHIKKRACGEFV-LPGLMKIQTVKKPAR 71

Query: 60  GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91
            +R G N  T +E+ I        V  +    LK 
Sbjct: 72  KARPGVNPFTGEEIMIAAKPASTTVKVRPLKKLKD 106


>gi|313665705|ref|YP_004047576.1| DNA-binding protein HU [Mycoplasma leachii PG50]
 gi|312950036|gb|ADR24632.1| DNA-binding protein HU [Mycoplasma leachii PG50]
          Length = 358

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 34/78 (43%)

Query: 18  FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDP 77
             +++          F     +   G+ I ++ F  F   +K + +  N  T +++++  
Sbjct: 281 VEMTKVSIKTIFDKAFIVASKNLAAGDHIVLAKFGKFETIEKEAEMKINPLTQEQIEVPA 340

Query: 78  RRVVVFKASSILKKRIMD 95
            ++V FK S  +K+++  
Sbjct: 341 HKIVKFKLSKSIKEKMNK 358


>gi|303257527|ref|ZP_07343539.1| putative integration host factor subunit alpha (IHF-alpha)
           [Burkholderiales bacterium 1_1_47]
 gi|331000208|ref|ZP_08323892.1| DNA-binding protein HU [Parasutterella excrementihominis YIT 11859]
 gi|302859497|gb|EFL82576.1| putative integration host factor subunit alpha (IHF-alpha)
           [Burkholderiales bacterium 1_1_47]
 gi|329572374|gb|EGG54027.1| DNA-binding protein HU [Parasutterella excrementihominis YIT 11859]
          Length = 118

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 45/98 (45%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
            T+ RS L + + +E G SR+ S  FVT  F  I D    GE +K+++   F +  +  +
Sbjct: 20  NTMNRSTLEEVLFEELGFSREMSRVFVTQFFQTISDVLATGEEVKLTTLGRFEICGRAYK 79

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100
           +  + +  +      R  V F  S  L   I  ++R +
Sbjct: 80  MFFDPEAKEWFDAPTRLDVYFHPSKKLTDFIDYNLRQK 117


>gi|299140823|ref|ZP_07033961.1| DNA-binding protein HU [Prevotella oris C735]
 gi|298577789|gb|EFI49657.1| DNA-binding protein HU [Prevotella oris C735]
          Length = 423

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           M+ T    D+ + +  + GL   D+  F+  + + I +   R   +KI    TF +    
Sbjct: 13  MAMT-NMKDIARCLVDKHGLKVADAEHFIALMIDVINEGVQRERQVKIKGLGTFKLTSVS 71

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           SR   ++ T + + I+ R  + F   + +K+ + 
Sbjct: 72  SRESVDVNTGERIVIEGRDKISFTPDNAMKELVN 105


>gi|257469718|ref|ZP_05633810.1| histone-like DNA-binding phage protein [Fusobacterium ulcerans
          ATCC 49185]
          Length = 90

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 5  ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + +S L +   +E    +S+  + + +      + ++ +    +K    ATF V ++  R
Sbjct: 1  MNKSQLAELYRRETDGEISKLKALKEIDDFMETLNEALMTDGKVKFHEKATFEVLERKPR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
          V  N  T + ++I P++ V FK S I+K
Sbjct: 61 VISNPATRERLEIFPKKTVKFKLSKIVK 88


>gi|83816472|ref|YP_445195.1| DNA-binding protein HU [Salinibacter ruber DSM 13855]
 gi|294507079|ref|YP_003571137.1| DNA-binding protein HU [Salinibacter ruber M8]
 gi|83757866|gb|ABC45979.1| probable DNA-binding protein HU [Salinibacter ruber DSM 13855]
 gi|294343407|emb|CBH24185.1| DNA-binding protein HU [Salinibacter ruber M8]
          Length = 126

 Score = 64.2 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 51/116 (43%), Gaps = 6/116 (5%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE---AIKISSFATFHVKQKG 60
           T T+ D+ + ++        ++   V ++   + D  +  +    I++ +F  F VK+  
Sbjct: 7   TATKEDVARRVANIQECPLYEAKEQVRSVLTALGDLMIEADPERRIELRNFGVFEVKKTK 66

Query: 61  SR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR--GRKCNKDDVTSPSGS 113
           ++   RN +TN+ + +  RR  +F+    +++ +   +R  G +  +       G 
Sbjct: 67  AKPTARNPKTNEPMFVPSRRKTLFRPGKRVEEVLKTPLRELGYEVPEGSAERDDGE 122


>gi|317063950|ref|ZP_07928435.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689626|gb|EFS26461.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 96

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 5  ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + +S L +   +E    +S+  + + +      + ++ +    +K    ATF V ++  R
Sbjct: 7  MNKSQLAELYRRETDGEISKLKALKEIDDFMETLNEALMTDGKVKFHEKATFEVLERKPR 66

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
          V  N  T + ++I P++ V FK S I+K
Sbjct: 67 VISNPATRERLEIFPKKTVKFKLSKIVK 94


>gi|322836831|ref|YP_004210745.1| histone family protein DNA-binding protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321165918|gb|ADW71618.1| histone family protein DNA-binding protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 132

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 36/91 (39%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           + +++  +++ ++++  L       F+  L         +     I         Q+ +R
Sbjct: 37  QKMSKIQVIRYMAEKTELPVGQCAAFLAGLVELALMQTKKNGEFTIPGLGKLVKSQRAAR 96

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           +GRN  T + ++I  +  V  + S   K  +
Sbjct: 97  IGRNPATGESIRIAAKTTVKLRISKAAKDVV 127


>gi|281425613|ref|ZP_06256526.1| putative integration host factor IHF alpha subunit [Prevotella
          oris F0302]
 gi|281400200|gb|EFB31031.1| putative integration host factor IHF alpha subunit [Prevotella
          oris F0302]
          Length = 421

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+ T    D+ + +  + GL   D+  F+  + + I +   R   +KI    TF +    
Sbjct: 4  MAMT-NMKDIARCLVDKHGLKVADAEHFIALMIDVINEGVQRERQVKIKGLGTFKLTSVS 62

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          SR   ++ T + + I+ R  + F   + +K+ + 
Sbjct: 63 SRESVDVNTGERIVIEGRDKISFTPDNAMKELVN 96


>gi|255013880|ref|ZP_05286006.1| putative integration host factor IHF alpha subunit [Bacteroides
          sp. 2_1_7]
          Length = 363

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 36/95 (37%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+  +   DL   +S+  G  R +  RF+    + + +     + +K+    TF +    
Sbjct: 1  MNNRLNIQDLAGLLSERTGKDRGEVERFLRDFISVVSEGVYTDKIVKVKGLGTFKIISVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R   ++ T +   I       F     L++++  
Sbjct: 61 KRESIHVNTGERFLIPEHYKFSFLPDKDLREQVNK 95


>gi|150007591|ref|YP_001302334.1| putative integration host factor IHF subunit alpha
          [Parabacteroides distasonis ATCC 8503]
 gi|298375537|ref|ZP_06985494.1| integration host factor IHF alpha subunit [Bacteroides sp.
          3_1_19]
 gi|149936015|gb|ABR42712.1| putative integration host factor IHF alpha subunit
          [Parabacteroides distasonis ATCC 8503]
 gi|298268037|gb|EFI09693.1| integration host factor IHF alpha subunit [Bacteroides sp.
          3_1_19]
          Length = 363

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 36/95 (37%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+  +   DL   +S+  G  R +  RF+    + + +     + +K+    TF +    
Sbjct: 1  MNNRLNIQDLAGLLSERTGKDRGEVERFLRDFISVVSEGVYTDKIVKVKGLGTFKIISVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R   ++ T +   I       F     L++++  
Sbjct: 61 KRESIHVNTGERFLIPEHYKFSFLPDKDLREQVNK 95


>gi|256839778|ref|ZP_05545287.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738708|gb|EEU52033.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 365

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 36/95 (37%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+  +   DL   +S+  G  R +  RF+    + + +     + +K+    TF +    
Sbjct: 3  MNNRLNIQDLAGLLSERTGKDRGEVERFLRDFISVVSEGVYTDKIVKVKGLGTFKIISVE 62

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R   ++ T +   I       F     L++++  
Sbjct: 63 KRESIHVNTGERFLIPEHYKFSFLPDKDLREQVNK 97


>gi|253583859|ref|ZP_04861057.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251834431|gb|EES62994.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 97

 Score = 64.2 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 5  ITRSDLVKSISKEFGLSR--KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T  + +    K   LSR  K++   V   ++ +  +      + + ++  F  K+  SR
Sbjct: 1  MTEKEFI-KFYKRRNLSRSYKEAKGKVDLFWDTLLKALNEDGKVSLKNWGVFEKKEVKSR 59

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
               +TN+ V I  ++ + F+  + L+  I   
Sbjct: 60 KVVLPKTNEAVIIGAKKKIKFRTGAGLQDAINSG 93


>gi|253584142|ref|ZP_04861340.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251834714|gb|EES63277.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 96

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 9  DLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          + +K + ++  L S K +   V   +  I D     E ++   +  F VK+   R+  N 
Sbjct: 5  EFIKELKEKRELRSMKIAKNKVDIFWEGIVDVLKTNEKLEFKGWGKFEVKETKERIFSNP 64

Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          +T +  KI  ++ + FK    LK+     ++
Sbjct: 65 RTKKIEKIPAQKKITFKQGKNLKRSFNTKVK 95


>gi|301310443|ref|ZP_07216382.1| DNA-binding protein HU [Bacteroides sp. 20_3]
 gi|300832017|gb|EFK62648.1| DNA-binding protein HU [Bacteroides sp. 20_3]
          Length = 359

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 36/95 (37%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+  +   DL   +S+  G  R +  RF+    + + +     + +K+    TF +    
Sbjct: 1  MNNRLNIQDLAGLLSERTGKDRGEVERFLRDFISVVSEGVYTDKIVKVKGLGTFKIISVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R   ++ T +   I       F     L++++  
Sbjct: 61 KRESIHVNTGERFLIPEHYKFSFLPDKDLREQVNK 95


>gi|222475030|ref|YP_002563445.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale
          str. Florida]
 gi|254994876|ref|ZP_05277066.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale
          str. Mississippi]
 gi|255003010|ref|ZP_05277974.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale
          str. Puerto Rico]
 gi|255004136|ref|ZP_05278937.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale
          str. Virginia]
 gi|269958917|ref|YP_003328706.1| DNA-binding protein HU [Anaplasma centrale str. Israel]
 gi|222419166|gb|ACM49189.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale
          str. Florida]
 gi|269848748|gb|ACZ49392.1| DNA-binding protein HU [Anaplasma centrale str. Israel]
          Length = 91

 Score = 63.8 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 44/90 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++  +V+++    G ++KDS+     + + +  +     +I++ +  T HV Q   +  
Sbjct: 1  MSKEIIVRALMSNLGFTKKDSSSAYDVVMSAVKTALETNHSIRLHNVGTLHVIQCAEKKY 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N +T +   + P+R V F++S  L   + 
Sbjct: 61 HNPKTGRLETLPPKRRVRFRSSRKLLDTVN 90


>gi|88606926|ref|YP_505361.1| DNA-binding protein HU [Anaplasma phagocytophilum HZ]
 gi|88597989|gb|ABD43459.1| DNA-binding protein HU [Anaplasma phagocytophilum HZ]
          Length = 91

 Score = 63.8 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 43/90 (47%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +++  +V+++    G ++KDS+     + + I  +     +I++ +  T HV Q   +  
Sbjct: 1  MSKEIIVRALMSGLGFTKKDSSSAYDVVMSAIKTALETNHSIRLHNVGTLHVIQCAEKKY 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           N +T     + P+R V F++S  L   + 
Sbjct: 61 HNPKTGHLETLPPKRRVRFRSSRKLLDTVN 90


>gi|262381910|ref|ZP_06075048.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262297087|gb|EEY85017.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 363

 Score = 63.8 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 36/95 (37%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+  +   DL   +S+  G  R +  RF+    + + +     + +K+    TF +    
Sbjct: 1  MNNRLNIQDLAGLLSERTGKDRGEVERFLRDFISVVSEGVYTDKIVKVKGLGTFKIISVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R   ++ T +   I       F     L++++  
Sbjct: 61 KRESIHVNTGERFLIPEHYKFSFLPDKDLREQVNK 95


>gi|257469043|ref|ZP_05633137.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
 gi|317063289|ref|ZP_07927774.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688965|gb|EFS25800.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 94

 Score = 63.8 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 5  ITRSDLVKSISKEFGLSR-KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +  +++++   ++  L   K +   +   +  + DS    E +    + TF VK+   R+
Sbjct: 1  MKETEIIREYKEKRKLKNLKTAKEKIEAFWETLIDSLQEDERLIFKGWGTFEVKKIKERI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
            N +T +  KI P   +VFK   ILKK+  +++
Sbjct: 61 FNNPRTKKIEKISPINKIVFKQGKILKKKFNEEI 94


>gi|153208886|ref|ZP_01947108.1| DNA-binding protein BpH2 [Coxiella burnetii 'MSU Goat Q177']
 gi|165920600|ref|ZP_02219571.1| DNA-binding protein BpH2 [Coxiella burnetii RSA 334]
 gi|212218921|ref|YP_002305708.1| DNA-binding protein [Coxiella burnetii CbuK_Q154]
 gi|120575675|gb|EAX32299.1| DNA-binding protein BpH2 [Coxiella burnetii 'MSU Goat Q177']
 gi|165916802|gb|EDR35406.1| DNA-binding protein BpH2 [Coxiella burnetii RSA 334]
 gi|212013183|gb|ACJ20563.1| bacterial DNA-binding protein [Coxiella burnetii CbuK_Q154]
          Length = 129

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISSFATFHVKQK--- 59
           +T+S ++  +++   L++K  T     L +       +G      +       VK+K   
Sbjct: 32  MTKSQILAHLAESTELTKKQVTMIFEALSDLTHAHLKKGGAGEFVVPGLCKCSVKRKPAT 91

Query: 60  GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94
            +R G N  T + +       R VV  +    LK+ + 
Sbjct: 92  KARKGINPFTGESMTFKAKPARNVVKIRPLKRLKEMVE 129


>gi|224418117|ref|ZP_03656123.1| hypothetical protein HcanM9_02456 [Helicobacter canadensis MIT
          98-5491]
 gi|253827444|ref|ZP_04870329.1| Histone-like DNA-binding protein HU (HupB) [Helicobacter
          canadensis MIT 98-5491]
 gi|313141652|ref|ZP_07803845.1| DNA-binding protein HU [Helicobacter canadensis MIT 98-5491]
 gi|253510850|gb|EES89509.1| Histone-like DNA-binding protein HU (HupB) [Helicobacter
          canadensis MIT 98-5491]
 gi|313130683|gb|EFR48300.1| DNA-binding protein HU [Helicobacter canadensis MIT 98-5491]
          Length = 96

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 39/96 (40%), Gaps = 2/96 (2%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSR 62
          + +S+ V  + +     ++K++ + ++     I  +   +  ++++  F  F    +  +
Sbjct: 1  MNKSEFVDLVKEVGEYETKKEAEKAISAFTAAIEKALSKKDGSVELVGFGKFETVLQKGK 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           G    T ++ K   + V  FKA    K  +    +
Sbjct: 61 EGTVPGTTKKYKTKDKFVPKFKAGKGFKDAVAAAKK 96


>gi|294660441|ref|NP_853203.2| histone-like DNA-binding superfamily protein HimA/HU/Integration
          host factor [Mycoplasma gallisepticum str. R(low)]
 gi|516627|gb|AAA91332.1| open reading frame ORF99; putative [Mycoplasma gallisepticum]
 gi|284812101|gb|AAP56771.2| histone-like DNA-binding superfamily protein HimA/HU/Integration
          host factor [Mycoplasma gallisepticum str. R(low)]
 gi|284930685|gb|ADC30624.1| histone-like DNA-binding superfamily protein HimA/HU/Integration
          host factor [Mycoplasma gallisepticum str. R(high)]
 gi|284931405|gb|ADC31343.1| histone-like DNA-binding superfamily protein HimA/HU/Integration
          host factor [Mycoplasma gallisepticum str. F]
          Length = 99

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 40/91 (43%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K+++ ++ +K ++ E  L  +D    VT+L   +         +++     F +     R
Sbjct: 5  KSLSAAEYLKEMADETNLKVQDIRLVVTSLQKVLAKELATTGEVRLFDIGKFKLVATKPR 64

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           G N +T Q+++I   + +    S IL   +
Sbjct: 65 TGINPKTKQKIQIPAGKKIKLTVSKILTDAV 95


>gi|27379515|ref|NP_771044.1| histone-like protein [Bradyrhizobium japonicum USDA 110]
 gi|27352667|dbj|BAC49669.1| histone-like protein [Bradyrhizobium japonicum USDA 110]
          Length = 140

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 7/99 (7%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           M+K +T++ L+ +I++   L++ D    +  +               I  F    V  K 
Sbjct: 43  MAK-MTKTQLIDAIAEGTQLAKNDVKSVIEYMATVGYKELNESGEFVIPGFVKMSVVNKP 101

Query: 61  ---SRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
              +R+G N  T + ++       + V      + K  +
Sbjct: 102 ATEARMGVNPFTKEPMQFAAKPASKSVKASPLKVAKDAV 140


>gi|228943512|ref|ZP_04105952.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228976071|ref|ZP_04136585.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228783642|gb|EEM31707.1| DNA-binding protein HU [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228816164|gb|EEM62349.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner
          ATCC 10792]
          Length = 54

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 29/51 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55
          + +++L K I+++  L++K++      + + I ++    E ++I  F+TF 
Sbjct: 1  MNKTELTKVIAEKTELTQKEAVAATQAVLDTIINALANKEKVQILGFSTFE 51


>gi|253583854|ref|ZP_04861052.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251834426|gb|EES62989.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 97

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T  + +K       L + K++   V   ++ I  +    E + + ++ TF  K+  +R 
Sbjct: 1  MTEKEFIKYYRNRNHLKNVKEAKEKVELFWDTILKALDEDEKVVLKNWGTFEKKEVKARR 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
              + ++ + ID +  + FKA   L+  I   
Sbjct: 61 VMIPKMDKIIIIDAKEKIRFKAGKGLRNVINGA 93


>gi|80159860|ref|YP_398604.1| histone-like DNA binding protein [Clostridium phage c-st]
 gi|78675450|dbj|BAE47872.1| histone-like DNA binding protein [Clostridium phage c-st]
          Length = 86

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 16 KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKI 75
          KE  +S+KD     + +   + +       +      TF    +G+RVGRN ++ +E++I
Sbjct: 8  KEVKVSKKDMDAIYSVVLETVAEVVKEEGKLTTP-IGTFKNTTRGARVGRNPRSGEEIQI 66

Query: 76 DPRRVVVFKASSILKKRIMD 95
               + FK S  +K+    
Sbjct: 67 AESHALTFKQSKAVKEEFNK 86


>gi|317063648|ref|ZP_07928133.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689324|gb|EFS26159.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 92

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 4  TITRSDLVKSISKEF---GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          ++ + +L K   K      L+ K +   +      + ++      ++      F +  + 
Sbjct: 3  SMNKRELAKVYKKRHSSNNLTVKKAVEEINEFLETVKEAIAIDSEVRFPKRGAFEILIRQ 62

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
           RV  N  T ++++I P++ V F+AS  +K
Sbjct: 63 PRVVSNPVTREQMEIYPKKTVRFRASKKMK 92


>gi|317062390|ref|ZP_07926875.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688066|gb|EFS24901.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 92

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 2/92 (2%)

Query: 1  MSKTITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          M   + R ++ K  S+     LS   S   +      + ++ V    +K      F +  
Sbjct: 1  MVIQMNRREMAKLYSEMSPDRLSIIKSEDEIEEFLETVKEAIVLDREVKFPRRGIFEILT 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          +  RV  N  T +++ I P++++ F+AS  +K
Sbjct: 61 RKPRVVANPVTKEQMTIYPKKIIKFRASKKMK 92


>gi|288800014|ref|ZP_06405473.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333262|gb|EFC71741.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039]
          Length = 458

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 41/85 (48%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
          L++ ++ + GL   ++  F++ +F  + +     + +KI    TF + +  +R   ++ T
Sbjct: 7  LIEMLTSKMGLEVAEAETFISVMFKVVNEGLREDKLVKIKGLGTFKLTKVSARESVDVNT 66

Query: 70 NQEVKIDPRRVVVFKASSILKKRIM 94
           + + ++ R  + F   + ++  + 
Sbjct: 67 GERIVLEGRDKISFTPDNYMRDLVN 91


>gi|308270543|emb|CBX27155.1| hypothetical protein N47_A11840 [uncultured Desulfobacterium sp.]
          Length = 54

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
           +T++++V++I  E   S+  S + V      I  S   G+ + IS F  F V
Sbjct: 2  ALTKANIVENIQSELEFSKNKSLQIVDAFIETIRGSLESGDDVLISGFGKFCV 54


>gi|317064237|ref|ZP_07928722.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689913|gb|EFS26748.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 91

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 5  ITRSDLVK---SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + + +  K    IS E  ++ +     V      + ++      +K     TF V  +  
Sbjct: 4  MNKREFAKTYRKISSE-DMTIETVLTDVDIFLETLREALQIEGKVKFVKRGTFEVISRKP 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          RV  N  T + + + P+++V F+AS  +K
Sbjct: 63 RVISNPATRERMTVYPKKIVKFRASKKIK 91


>gi|257468667|ref|ZP_05632761.1| non-specific DNA-binding protein HBsu [Fusobacterium ulcerans
          ATCC 49185]
 gi|317062922|ref|ZP_07927407.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688598|gb|EFS25433.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 96

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 34/72 (47%)

Query: 23 KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVV 82
          K +   V   +  + D     + +    + +F VK++ +++  N +T +  +I   + ++
Sbjct: 20 KIAKERVEIFWETLLDILKEEKKVIFKGWGSFEVKERKAKIFNNPKTKKAERIPACKKII 79

Query: 83 FKASSILKKRIM 94
          FK   +LKKR  
Sbjct: 80 FKQGKLLKKRFN 91


>gi|186474602|ref|YP_001863573.1| DNA-binding protein HU-alpha [Burkholderia phymatum STM815]
 gi|184198561|gb|ACC76523.1| DNA-binding protein HU-alpha [Burkholderia phymatum STM815]
          Length = 58

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 24/49 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53
          + + +L+ +++   G S+  +   +  +   +  +  RGE +++  F +
Sbjct: 1  MNKHELIDAVATSTGESKSSTGEAIDAILEAVTAAVTRGETVQLVGFGS 49


>gi|330880619|gb|EGH14768.1| single-stranded binding protein [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
          Length = 66

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 26/65 (40%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  LV  I++     +  +   +  L + + D    G  I +       V ++ +R 
Sbjct: 2  ALTKDQLVAGIAEAIDAPKTTARNALEQLGHIVADQLESGAEITLPGIGKLKVAERPART 61

Query: 64 GRNLQ 68
          GRN  
Sbjct: 62 GRNPS 66


>gi|110833609|ref|YP_692468.1| DNA-binding protein [Alcanivorax borkumensis SK2]
 gi|110646720|emb|CAL16196.1| bacterial DNA-binding protein [Alcanivorax borkumensis SK2]
          Length = 124

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 8/98 (8%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR--GEAIKISSFATFHVKQK 59
           ++ + ++ ++  IS+  GL++KD       L + +     +       +        ++K
Sbjct: 24  TEPMNKTQIINQISETTGLTKKDVNAVFDQLNDIMEGHLKKRGAGQFTLPGLLKIVTQKK 83

Query: 60  ---GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91
               +R G N  T +         R +V  +    LK 
Sbjct: 84  PATKARKGINPFTGEATTFAAKPARTMVKVRPLKKLKD 121


>gi|257469787|ref|ZP_05633879.1| hypothetical protein FulcA4_10627 [Fusobacterium ulcerans ATCC
          49185]
 gi|317064017|ref|ZP_07928502.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689693|gb|EFS26528.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 88

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 5  ITRSDLVKSISKEF---GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + + +    I ++     ++ + + R +      + ++      +K     TF V  +  
Sbjct: 1  MNKREFA-KIYRKISSDDVTIEAALRDIDIFLETLREALQIEGEVKFVKRGTFEVISRKP 59

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          RV  N  T + + + P+++V F+AS  +K
Sbjct: 60 RVISNPVTRERMTVYPKKIVRFRASKKIK 88


>gi|73667235|ref|YP_303251.1| histone-like DNA-binding protein [Ehrlichia canis str. Jake]
 gi|72394376|gb|AAZ68653.1| Histone-like bacterial DNA-binding protein [Ehrlichia canis str.
          Jake]
          Length = 87

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 8/93 (8%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S LV+ ISK+   LS +  ++ +   F+ I +    G  +++  F +F V+      
Sbjct: 1  MLKSHLVQHISKKNPSLSEEIVSKILNIFFSLIIEYLKNGYRVELRGFGSFTVRSY---- 56

Query: 64 GRNLQT-NQEVKIDPRRVVVFKASSILKKRIMD 95
            N++T N  +  +  R V F+AS+   K I  
Sbjct: 57 --NIKTVNTRLTKNKYRKVYFRASNKFIKLINQ 87


>gi|257469401|ref|ZP_05633494.1| hypothetical protein FulcA4_08674 [Fusobacterium ulcerans ATCC
          49185]
          Length = 89

 Score = 62.2 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 5  ITRSDLVKSISKEF---GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + + +L K   K      L+ K +   +      + ++      ++      F +  +  
Sbjct: 1  MNKRELAKVYKKRHSSNNLTVKKAVEEINEFLETVKEAIAIDSEVRFPKRGAFEILIRQP 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          RV  N  T ++++I P++ V F+AS  +K
Sbjct: 61 RVVSNPVTREQMEIYPKKTVRFRASKKMK 89


>gi|153841627|ref|ZP_01993426.1| DNA-binding protein HU [Vibrio parahaemolyticus AQ3810]
 gi|149745458|gb|EDM56709.1| DNA-binding protein HU [Vibrio parahaemolyticus AQ3810]
          Length = 137

 Score = 62.2 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R GRN +T +++ I  RRVV F+    LK R+ +
Sbjct: 99  RPGRNPKTGEDIPITARRVVTFRPGQKLKARVEN 132


>gi|294340617|emb|CAZ89007.1| putative Integration host factor (IHF) [Thiomonas sp. 3As]
          Length = 107

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%)

Query: 19 GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPR 78
           L+RKD+      + N I  +   G+ ++I +F  F    + + + R+ +T + V     
Sbjct: 7  HLARKDAEEAGEVILNGIMRAVAEGKRVEIRNFGVFSASLRKAHLTRSPKTAKPVPKASA 66

Query: 79 RVVVFKASSIL 89
          R   F+A   L
Sbjct: 67 RFPKFRADKPL 77


>gi|254429211|ref|ZP_05042918.1| DNA-binding protein HU [Alcanivorax sp. DG881]
 gi|196195380|gb|EDX90339.1| DNA-binding protein HU [Alcanivorax sp. DG881]
          Length = 124

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 8/98 (8%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR--GEAIKISSFATFHVKQK 59
           ++ + ++ ++  IS+  GL++KD       L + +     +       +        ++K
Sbjct: 24  TEPMNKTQIINQISETTGLTKKDVNAVFDELGDIMEGHLKKRGAGQFTLPGLLKIVTQKK 83

Query: 60  ---GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91
               +R G N  T +         R +V  +    LK 
Sbjct: 84  PATKARKGINPFTGEATTFAAKPARTMVKVRPLKKLKD 121


>gi|317063851|ref|ZP_07928336.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689527|gb|EFS26362.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 92

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 1  MSKTITRSDLVKSISKEFGLSR---KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          M K + +  L   + +E  L      +S + +      + ++ +    +K +    F + 
Sbjct: 1  MVKPMNKRSLA-KLYREMSLRTLVLSESIKEIDIFLETLEEALLVDGEVKFTKVGVFEIL 59

Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
           + SRV  N  T + + I P++ V F+ S  +K
Sbjct: 60 TRKSRVIANPVTKEPMMIYPKKTVKFRVSKKMK 92


>gi|9628142|ref|NP_042728.1| histone-like protein [African swine fever virus]
 gi|56405050|sp|P68742|VHLP_ASFB7 RecName: Full=Viral histone-like protein
 gi|56405051|sp|P68743|VHLP_ASFM2 RecName: Full=Viral histone-like protein
 gi|229892031|sp|P0C9E5|VHLP_ASFK5 RecName: Full=Viral histone-like protein A104R
 gi|229892032|sp|P0C9E3|VHLP_ASFP4 RecName: Full=Viral histone-like protein A104R
 gi|289177|gb|AAA42689.1| histone-like DNA binding protein [African swine fever virus]
 gi|780404|gb|AAA65264.1| histone-like protein [African swine fever virus]
 gi|162849245|emb|CAN10133.1| Histone-like protein [African swine fever virus Benin 97/1]
 gi|162849417|emb|CAN10382.1| Histone-like protein [African swine fever virus OURT 88/3]
 gi|291289478|emb|CBH29135.1| BA71V-A104R [African swine fever virus E75]
 gi|303398719|emb|CBW46700.1| A104R [African swine fever virus Georgia 2007/1]
 gi|1097423|prf||2113434AG histone-like protein
          Length = 104

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS---SFATFHVKQK 59
            TIT+ +L   ++ +  L++    R  T+    I ++    + + I     F    VK K
Sbjct: 7   PTITKQELYSLVAADTQLNKALIERIFTSQQKIIQNALKHNQEVIIPPGIKFTVVTVKAK 66

Query: 60  GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94
            +R G N  T + ++I      + V  +A   +   + 
Sbjct: 67  PARQGHNPATGEPIQIKAKPEHKAVKIRALKPVHDMLN 104


>gi|229892033|sp|P0C9E4|VHLP_ASFWA RecName: Full=Viral histone-like protein A104R
          Length = 104

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS---SFATFHVKQK 59
            TIT+ +L   ++ +  L++    R  T+    I ++    + + I     F    VK K
Sbjct: 7   PTITKQELYSLVAADTQLNKALIERIFTSQQKIIQNALKHNQEVIIPPGIKFTVVTVKAK 66

Query: 60  GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94
            +R G N  T + ++I      + V  +A   +   + 
Sbjct: 67  PARQGHNPATGEPIQIKAKPEHKAVKIRALKPVHDMLN 104


>gi|253584313|ref|ZP_04861511.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251834885|gb|EES63448.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 92

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 5  ITRSDLVK--SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +L K  +I  +  +SRK +   +      + ++  +  ++K  +  TF V ++  +
Sbjct: 4  LNKKELAKVYNIVSQGKISRKAALEEINIFTQTLQEALCKYNSVKFINRGTFEVIKRKPK 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASS 87
          V  N  T + +KI   +VV F+AS 
Sbjct: 64 VVSNPSTRELMKISLGKVVRFRASK 88


>gi|73666903|ref|YP_302919.1| histone-like DNA-binding protein [Ehrlichia canis str. Jake]
 gi|72394044|gb|AAZ68321.1| Histone-like bacterial DNA-binding protein [Ehrlichia canis str.
          Jake]
          Length = 94

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSK +    +V+++  E GL++K S++    +   I ++      I++ +  T HV Q  
Sbjct: 1  MSKDM----VVRTLMGELGLTKKVSSQAYDLVMLSIQNALENSHLIRLHNVGTLHVIQCA 56

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           +   N +T +   + P++ V F++S  L   I 
Sbjct: 57 EKKYHNPKTGKLETLAPKKRVRFRSSKKLSNAIN 90


>gi|50365273|ref|YP_053698.1| histone-like DNA-binding protein [Mesoplasma florum L1]
 gi|50363829|gb|AAT75814.1| predicted histone-like DNA-binding protein [Mesoplasma florum L1]
          Length = 377

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 3   KTITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQK 59
             +T++DLV SI       L++    + V +LF  + ++ V  G  IKI++FA F     
Sbjct: 279 NKVTKNDLVNSIFSNNENKLTKVKIKKIVDSLFELMENNLVNEGSEIKINNFAKFSTVFV 338

Query: 60  GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
                ++++T +   +  R+ + FK+   L++ + ++
Sbjct: 339 DETTMKDMKTGELKMVPSRKTIKFKSLKGLRESLNNE 375


>gi|257470012|ref|ZP_05634104.1| hypothetical protein FulcA4_11773 [Fusobacterium ulcerans ATCC
          49185]
          Length = 88

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 5  ITRSDLVK---SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + + +  K    IS E  ++ +     V      + ++      +K     TF V  +  
Sbjct: 1  MNKREFAKTYRKISSE-DMTIETVLTDVDIFLETLREALQIEGKVKFVKRGTFEVISRKP 59

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          RV  N  T + + + P+++V F+AS  +K
Sbjct: 60 RVISNPATRERMTVYPKKIVKFRASKKIK 88


>gi|253584115|ref|ZP_04861313.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251834687|gb|EES63250.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 92

 Score = 61.5 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 5  ITRSDLVKSISK--EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +L K  S   +  +S+K +   +      + ++ ++ +++   +     V ++  R
Sbjct: 4  MNKRELAKIYSTITQGKISQKAALEEINIFTQTLQEALMKYDSVTFVNRGILEVLERKPR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASS 87
          +  N  T + +KI P++VV F+AS 
Sbjct: 64 LVSNPSTRELMKIYPKKVVRFRASK 88


>gi|257468105|ref|ZP_05632201.1| hypothetical protein FulcA4_02137 [Fusobacterium ulcerans ATCC
          49185]
          Length = 88

 Score = 61.5 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 5  ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + R ++ K  S+     LS   S   +      + ++ V    +K      F +  +  R
Sbjct: 1  MNRREMAKLYSEMSPDRLSIIKSEDEIEEFLETVKEAIVLDREVKFPRRGIFEILTRKPR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
          V  N  T +++ I P++++ F+AS  +K
Sbjct: 61 VVANPVTKEQMTIYPKKIIKFRASKKMK 88


>gi|209527523|ref|ZP_03276025.1| histone family protein DNA-binding protein [Arthrospira maxima
          CS-328]
 gi|209492011|gb|EDZ92364.1| histone family protein DNA-binding protein [Arthrospira maxima
          CS-328]
          Length = 73

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 26 TRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVF-- 83
             +   F+ I      G+ + +     F  K++ +R   N +T +  ++  R VV F  
Sbjct: 1  RAILDLAFSAISQEIESGQPVVVRGLGKFTPKEQPARTKTNPETGETTEVPARTVVNFRV 60

Query: 84 -KASSILKKR 92
           K S   ++ 
Sbjct: 61 IKPSKDTEEA 70


>gi|317062494|ref|ZP_07926979.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688170|gb|EFS25005.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 91

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 5  ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + R ++ K  S+     LS   +   +      + ++      +K      F +  +  R
Sbjct: 4  MNRREMAKLYSEMSPDRLSIIKAEDEIEEFLETLKEAIALDREVKFPRRGIFEILTRKPR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
          V  N  T +++ I P++++ F+AS  +K
Sbjct: 64 VVANPVTKEQMTIYPKKIIKFRASKKIK 91


>gi|262037630|ref|ZP_06011076.1| DNA-binding protein HU-alpha [Leptotrichia goodfellowii F0264]
 gi|261748346|gb|EEY35739.1| DNA-binding protein HU-alpha [Leptotrichia goodfellowii F0264]
          Length = 55

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 41 VRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDP 77
           +GE ++   + TF V+++ +R GRN QT +E+KI  
Sbjct: 1  AKGETVQFVGWGTFGVQKRAARTGRNPQTGKEIKIAA 37


>gi|253583070|ref|ZP_04860284.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251835057|gb|EES63604.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 94

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%)

Query: 25 STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84
          +   V   +  + D     E +    + +F VK+   R+  N +T +  KI     +VFK
Sbjct: 22 AKEKVEIFWENLADILKEEEKLIFKGWGSFEVKEVKERIFNNPRTKKSEKIPATNKIVFK 81

Query: 85 ASSILKKRIMDDM 97
             ILK++  + +
Sbjct: 82 QGKILKRKFNEKV 94


>gi|39939020|ref|NP_950786.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
 gi|39939184|ref|NP_950950.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
 gi|39722129|dbj|BAD04619.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
           OY-M]
 gi|39722293|dbj|BAD04783.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
           OY-M]
          Length = 110

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 15/106 (14%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGS-- 61
           +T+ +L+KSI+++   S   +  F  +  N I  +      + +SS    F +K + +  
Sbjct: 1   MTKKELIKSIAEKNKTSITQTEEFYNSFENAIIKAITNNAEVVLSSKLGKFILKTRKAHL 60

Query: 62  ----------RVGRN--LQTNQEVKIDPRRVVVFKASSILKKRIMD 95
                     R G+    +T + +KI  + VV FK S  +K ++ +
Sbjct: 61  TPETKFIINKRTGKKNAQRTGKNLKIPSKTVVTFKLSKTIKDKVKE 106


>gi|154707087|ref|YP_001423674.1| DNA-binding protein [Coxiella burnetii Dugway 5J108-111]
 gi|165923916|ref|ZP_02219748.1| DNA-binding protein BpH2 [Coxiella burnetii RSA 334]
 gi|154356373|gb|ABS77835.1| bacterial DNA-binding protein [Coxiella burnetii Dugway 5J108-111]
 gi|165916641|gb|EDR35245.1| DNA-binding protein BpH2 [Coxiella burnetii RSA 334]
          Length = 149

 Score = 61.1 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 8/96 (8%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISSFATFHVKQK---GS 61
           +S L   I++   LS+K+ +  +  L + +     +G      +       VK+K    +
Sbjct: 54  KSQLTTHIAEATNLSKKEVSAVLDELADVMHRHLRKGAAGEFTLPGLVKCTVKRKPATKA 113

Query: 62  RVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94
           R G N  T + +       R VV  +A   LK+ + 
Sbjct: 114 RKGINPFTGEMMTFKAKPARNVVKVRALKRLKEMVE 149


>gi|218261907|ref|ZP_03476580.1| hypothetical protein PRABACTJOHN_02251 [Parabacteroides johnsonii
          DSM 18315]
 gi|218223701|gb|EEC96351.1| hypothetical protein PRABACTJOHN_02251 [Parabacteroides johnsonii
          DSM 18315]
          Length = 422

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 35/95 (36%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+  +T  DL   +++  G  +  S RF+      + +     + +K+    TF +    
Sbjct: 1  MNNRLTIQDLAGLLAEYTGKDKNSSERFLREFIAVVSEGVYTDKLVKVKGLGTFKIIPVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R   ++ T +   I       F     L++ +  
Sbjct: 61 KRESIHVNTGERFVIPEHYKFSFLPDKELRELVNK 95


>gi|253583860|ref|ZP_04861058.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251834432|gb|EES62995.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 89

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 4/86 (4%)

Query: 5  ITRSDLVK---SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + + +L K   +IS+E  + R+++ + +      + ++  +  ++   +   F V ++  
Sbjct: 1  MNKRELAKIYSTISQE-EVLRREALKEIEIFIQTLQEALQKYNSVTFVNRGVFEVAKRKP 59

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASS 87
          +V  N  T + +KI PR+ V F+AS 
Sbjct: 60 KVVSNPSTRELMKIYPRKTVKFRASK 85


>gi|257468389|ref|ZP_05632483.1| hypothetical protein FulcA4_03549 [Fusobacterium ulcerans ATCC
          49185]
 gi|317062662|ref|ZP_07927147.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688338|gb|EFS25173.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 88

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 5  ITRSDLVKSISKEF---GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + + ++   + ++     +S  ++   +      + ++      ++      F +  +  
Sbjct: 1  MNKKEMA-KLYQKMTSEKISIMEAKEEIEEFLETVKEAIALDGEVRFPKRGAFEILTRQP 59

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          R+  N  T +++KI P++ V F+AS  +K
Sbjct: 60 RLVANPITKEQMKIYPKKTVRFRASKKMK 88


>gi|325107670|ref|YP_004268738.1| histone family protein DNA-binding protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324967938|gb|ADY58716.1| histone family protein DNA-binding protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 126

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 9/101 (8%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAI-KISSFATFHVKQK 59
           +K +++++L+ S+S+  GLS+KD +  +  L   I  +   RG  +  +       V++K
Sbjct: 26  AKPMSKTELLTSLSESTGLSKKDVSAVLDGLGEVIQKNLGKRGPGVFNLPGLLKIQVQRK 85

Query: 60  GSRVGR---NL-QTNQEVKI---DPRRVVVFKASSILKKRI 93
            +       N  +  + + +     R VV  +    LK  +
Sbjct: 86  PATKATTRENPFKPGEMMTVKAKPARNVVKVRPLKGLKDMV 126


>gi|162454873|ref|YP_001617240.1| histone-like protein [Sorangium cellulosum 'So ce 56']
 gi|161165455|emb|CAN96760.1| histone-like protein [Sorangium cellulosum 'So ce 56']
          Length = 112

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 8/100 (8%)

Query: 3   KTITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK- 59
           KT+++S L+++I++  G  LSRK     + +L         +     +  FA F V ++ 
Sbjct: 13  KTLSKSGLIQAITEAAGDELSRKQVKNVLESLITIGHRELKKSGVFTLPGFAKFRVVKRP 72

Query: 60  --GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94
              +R G N  T Q +        + V  +    +K  ++
Sbjct: 73  ATKARQGINPFTKQPMTFAAKPASKSVRARPIKAIKDALL 112


>gi|302346575|ref|YP_003814873.1| DNA-binding protein HU [Prevotella melaninogenica ATCC 25845]
 gi|302151149|gb|ADK97410.1| DNA-binding protein HU [Prevotella melaninogenica ATCC 25845]
          Length = 455

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 5  ITRS--DLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + +S   L+  +++K+  LS  D+  FV   F+ I      G  +KI    TF V+    
Sbjct: 1  MAKSAIQLITSALAKQHNLSADDAAAFVDAFFDIISSELKNGNQVKIKGLGTFKVQAVKP 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          R   N+ T + V I+    + F   +++K+ +  
Sbjct: 61 RESVNVNTGERVLIEGHDKISFTPDTVMKELVNK 94


>gi|288802184|ref|ZP_06407624.1| integration host factor IHF alpha subunit [Prevotella
          melaninogenica D18]
 gi|288335151|gb|EFC73586.1| integration host factor IHF alpha subunit [Prevotella
          melaninogenica D18]
          Length = 455

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 5  ITRS--DLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + +S   L+  +++K+  LS  D+  FV   F+ I      G  +KI    TF V+    
Sbjct: 1  MAKSAIQLITSALAKQHNLSVADAAAFVDAFFDIISSELKNGNQVKIKGLGTFKVQAVKP 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          R   N+ T + V I+    + F   +++K+ +  
Sbjct: 61 RESVNVNTGERVLIEGHDKISFTPDTVMKELVNK 94


>gi|255594034|ref|XP_002536006.1| conserved hypothetical protein [Ricinus communis]
 gi|223521229|gb|EEF26379.1| conserved hypothetical protein [Ricinus communis]
          Length = 169

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 26/49 (53%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53
           + R +L+ +++   G S+ ++   +  +   +  + +RGE +++  F +
Sbjct: 121 VNRHELIDAVAVATGGSKTNTAEAIDAILETVTAAVIRGETVQLIGFGS 169


>gi|257468209|ref|ZP_05632305.1| hypothetical protein FulcA4_02657 [Fusobacterium ulcerans ATCC
          49185]
          Length = 88

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 5  ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + R ++ K  S+     LS   +   +      + ++      +K      F +  +  R
Sbjct: 1  MNRREMAKLYSEMSPDRLSIIKAEDEIEEFLETLKEAIALDREVKFPRRGIFEILTRKPR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
          V  N  T +++ I P++++ F+AS  +K
Sbjct: 61 VVANPVTKEQMTIYPKKIIKFRASKKIK 88


>gi|253582642|ref|ZP_04859863.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251835512|gb|EES64052.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 94

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 5  ITRSDLVKSISK--EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +L +  SK  + G + K++ + +      + ++ +    IK     TF V +K  R
Sbjct: 6  MNKKELARVYSKMSKEGTNIKEALKEIDIFTKTVEEALLIKGYIKFIKRGTFMVLKKKPR 65

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKK 91
             N  T + ++I P+  V FK S  L +
Sbjct: 66 TVSNPSTKELMRIYPKNTVKFKTSKKLVE 94


>gi|298373792|ref|ZP_06983781.1| DNA-binding protein HU [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274844|gb|EFI16396.1| DNA-binding protein HU [Bacteroidetes oral taxon 274 str. F0058]
          Length = 94

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 38/91 (41%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   +L+  +S+    +++ +  F+     EI D    G  I+   F       +  ++ 
Sbjct: 1  MDNKELIVKLSRSTKATQEKTKEFLDAFVEEISDKLGAGNHIEFLDFGVLQTVVREQKII 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           N +T +     P+ VV  K +  +K+ I +
Sbjct: 61 TNPKTQKRTLYPPKNVVELKVTKSVKEHIKN 91


>gi|253582815|ref|ZP_04860035.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|257470501|ref|ZP_05634591.1| histone-like DNA-binding phage protein [Fusobacterium ulcerans
          ATCC 49185]
 gi|317064708|ref|ZP_07929193.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|251835391|gb|EES63932.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|313690384|gb|EFS27219.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 94

 Score = 61.1 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + + D +K   K+   L+  ++   V  +   I     +   ++  +   F V     + 
Sbjct: 1  MNKKDFIKLYRKKLNNLTIAEAKEDVEAILEIIEAGLKKDGKVQFFNKGVFTVGNIKPKT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            N +T + ++    + V F AS  LK +I D
Sbjct: 61 ISNPKTRELMQTTEMKKVKFNASFKLKDKIQD 92


>gi|46562241|ref|YP_009044.1| DNA-binding protein HU [Desulfovibrio vulgaris str. Hildenborough]
 gi|46447778|gb|AAS94444.1| DNA-binding protein HU, putative [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311235386|gb|ADP88239.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris
           RCH1]
          Length = 117

 Score = 61.1 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 2/113 (1%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           M KT ++  LV  + +   L+ + +   +  L+    +   +G  + +            
Sbjct: 1   MEKT-SKPQLVAYLRERAHLTEEQALMTLKALYLFSLEHLEKGVGVVLPDIGQIKPSMGK 59

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
             VGRN +T +   I+P+  + F AS  LK+ + D  + +   + D  S  G+
Sbjct: 60  GGVGRNFRTGEATVIEPKLKLTFSASKALKEPL-DAAQRKAAKQRDAKSQDGA 111


>gi|68171138|ref|ZP_00544547.1| Histone-like bacterial DNA-binding protein [Ehrlichia chaffeensis
          str. Sapulpa]
 gi|88657616|ref|YP_507602.1| DNA-binding protein HU [Ehrlichia chaffeensis str. Arkansas]
 gi|67999463|gb|EAM86103.1| Histone-like bacterial DNA-binding protein [Ehrlichia chaffeensis
          str. Sapulpa]
 gi|88599073|gb|ABD44542.1| DNA-binding protein HU [Ehrlichia chaffeensis str. Arkansas]
          Length = 94

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSK +    +V+++  E GL++K S++    +   I ++      I++ +  T HV Q  
Sbjct: 1  MSKDM----VVRTLMGELGLTKKVSSQAYDLVMLSIQNALETSHLIRLHNVGTLHVIQCA 56

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           +   N +T +   + P++ V F++S  L   I 
Sbjct: 57 EKKYHNPKTGKLETLAPKKRVRFRSSKKLSNAIN 90


>gi|120586958|ref|YP_961303.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris
           subsp. vulgaris DP4]
 gi|120564372|gb|ABM30115.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris
           DP4]
          Length = 117

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 2/113 (1%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           M KT ++  LV  + +   L+ + +   +  L+    +   +G  + +            
Sbjct: 1   MEKT-SKPQLVAYLRERAHLTEEQALMTLKALYLFSLEHLEKGVGVVLPDIGQIKPSMGK 59

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
             VGRN +T +   I+P+  + F AS  LK+ + D  + +   + D  S  G+
Sbjct: 60  GGVGRNFRTGEATVIEPKLKLTFSASKALKEPL-DAAQRKAAKQRDAKSQDGT 111


>gi|317063948|ref|ZP_07928433.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689624|gb|EFS26459.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 100

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T  + +    K+ GL S  ++   V   ++ + ++    E++    +  F  K   +R 
Sbjct: 4  MTEKEFLTLYQKKRGLKSLNEAKEKVNMFWDTLFEALEENESVSFRGWGVFEKKVVPARR 63

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            N+ T +     PR+ V F+  S L  RI ++ +
Sbjct: 64 IMNINTKKIQYSTPRKTVRFRTGSNLSLRINEEKK 98


>gi|49146394|ref|YP_025502.1| putative integration host factor alpha subunit [Caedibacter
           taeniospiralis]
 gi|40458362|gb|AAR87110.1| putative integration host factor alpha subunit [Caedibacter
           taeniospiralis]
          Length = 183

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 49/97 (50%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +++++R++L+K +S +   SR+D   F   L N + +  +    I +     F  +    
Sbjct: 30  NRSMSRNELIKHLSLKTKFSREDCNHFFYELMNLLREQLLNNRIILLEGLGRFETRVSFR 89

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           +   N +T +++K   +RVV+FK ++  K  I D+  
Sbjct: 90  KNAHNPRTMEKIKPREKRVVLFKFANEFKALISDEAH 126


>gi|94317729|gb|ABF15024.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Newport]
          Length = 48

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 24/48 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFA 52
          + +S+L+  ++++  +S+  +   V  L N + +    G  + ++ F 
Sbjct: 1  MNKSELIMKVAEDADISKAKAEAAVNALINSVTEELKAGGTVALTGFG 48


>gi|325914662|ref|ZP_08177003.1| bacterial nucleoid DNA-binding protein [Xanthomonas vesicatoria
          ATCC 35937]
 gi|325539164|gb|EGD10819.1| bacterial nucleoid DNA-binding protein [Xanthomonas vesicatoria
          ATCC 35937]
          Length = 92

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 29/106 (27%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + R DLV+ ++ E  L +  +TR V  LF  I     +G  + IS F  F          
Sbjct: 1  MNRKDLVELLAHELDLPKHKTTRLVAMLFEAIVAQLGKGREVNISGFGVFG--------- 51

Query: 65 RNLQTNQEVKIDPR---------------RVVVFKASSILKKRIMD 95
               ++ V I                  R   F+ S  L +++  
Sbjct: 52 -----SEPVTIHAASTRRLAPSLQSTHTIRRPTFRPSDGLTRKLSK 92


>gi|317064289|ref|ZP_07928774.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689965|gb|EFS26800.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 92

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 35/74 (47%)

Query: 17 EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKID 76
          +  +S K +   +      I ++ +    IK     TF + ++ SR+  N  T + +KI 
Sbjct: 17 KEEISLKKAQEEIDEFIEVIQEAILIDGKIKFKEIGTFEILKRHSRIIANPVTKEPMKIY 76

Query: 77 PRRVVVFKASSILK 90
          P++ + F+ S  LK
Sbjct: 77 PKKTIKFRVSKNLK 90


>gi|257469716|ref|ZP_05633808.1| hypothetical protein FulcA4_10270 [Fusobacterium ulcerans ATCC
          49185]
          Length = 97

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T  + +    K+ GL S  ++   V   ++ + ++    E++    +  F  K   +R 
Sbjct: 1  MTEKEFLTLYQKKRGLKSLNEAKEKVNMFWDTLFEALEENESVSFRGWGVFEKKVVPARR 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            N+ T +     PR+ V F+  S L  RI ++ +
Sbjct: 61 IMNINTKKIQYSTPRKTVRFRTGSNLSLRINEEKK 95


>gi|255021291|ref|ZP_05293339.1| histone family protein DNA-binding protein [Acidithiobacillus
          caldus ATCC 51756]
 gi|254969154|gb|EET26668.1| histone family protein DNA-binding protein [Acidithiobacillus
          caldus ATCC 51756]
          Length = 43

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          ++ +R GRN  T QE+ I   R   FKA   L+  + 
Sbjct: 7  EREARKGRNPATGQEIMIAASRTPEFKAGKALRDAVN 43


>gi|257470065|ref|ZP_05634157.1| hypothetical protein FulcA4_12040 [Fusobacterium ulcerans ATCC
          49185]
          Length = 90

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 35/74 (47%)

Query: 17 EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKID 76
          +  +S K +   +      I ++ +    IK     TF + ++ SR+  N  T + +KI 
Sbjct: 15 KEEISLKKAQEEIDEFIEVIQEAILIDGKIKFKEIGTFEILKRHSRIIANPVTKEPMKIY 74

Query: 77 PRRVVVFKASSILK 90
          P++ + F+ S  LK
Sbjct: 75 PKKTIKFRVSKNLK 88


>gi|253584372|ref|ZP_04861570.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251834944|gb|EES63507.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 101

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T  + +    K+ GL S  ++   V   ++ + ++    E++    +  F  K   +R 
Sbjct: 4  MTEREFLSLYQKKRGLKSFNEAKEKVNMFWDTLFEALKENESVSFRGWGVFEKKVVPARR 63

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            N+ T +     PR+ V F+  S L  RI D+ +
Sbjct: 64 IMNINTKKIQYSTPRKTVRFRTGSNLSLRINDEKK 98


>gi|161830256|ref|YP_001597572.1| DNA-binding protein BpH2 [Coxiella burnetii RSA 331]
 gi|161762123|gb|ABX77765.1| DNA-binding protein BpH2 [Coxiella burnetii RSA 331]
          Length = 149

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 8/96 (8%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISSFATFHVKQK---GS 61
           +S L   I+    LS+K+ +  +  L + +     +G      +       VK+K    +
Sbjct: 54  KSQLTTHIAGATNLSKKEVSAVLDELADVMHRHLRKGAAGEFTLPGLVKCTVKRKPATKA 113

Query: 62  RVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94
           R G N  T + +       R VV  +A   LK+ + 
Sbjct: 114 RKGINPFTGEMMTFKAKPARNVVKVRALKRLKEMVE 149


>gi|317503238|ref|ZP_07961296.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315665651|gb|EFV05260.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 436

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 1/92 (1%)

Query: 5  ITR-SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T   DL + + ++ G+   D+  F++ +   I +   R   +KI    TF +    SR 
Sbjct: 1  MTNIKDLARFLVEKHGIKLADAELFISLMTEIINEGVHRERQVKIKGLGTFKLTSVSSRE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            ++ T + + I+ R  + F   + +K+ +  
Sbjct: 61 SIDVNTGERIVIEGRDKLSFAPDNAMKELVNQ 92


>gi|317062955|ref|ZP_07927440.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688631|gb|EFS25466.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 92

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 2/92 (2%)

Query: 1  MSKTITRSDLVKSISKEF--GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          M   + + +L K   K     +S   + + +      + +S      +       F +  
Sbjct: 1  MVIQMNKRELAKVYVKMSPKNISIVQAVKEIEEFLETLKESIALDNEVGFPKRGVFEILT 60

Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          +  RV  N  T + + + P++ V F+AS  +K
Sbjct: 61 RQPRVVANPVTRERMTVYPKKTVKFRASKKIK 92


>gi|257470164|ref|ZP_05634256.1| hypothetical protein FulcA4_12557 [Fusobacterium ulcerans ATCC
          49185]
 gi|317064383|ref|ZP_07928868.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690059|gb|EFS26894.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 88

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 5  ITRSDLVKSISKEFG---LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + R +L   + ++     ++   +   +      + ++      +K      F +  +  
Sbjct: 1  MNRKELA-KLYQKMSSEKITITKAREEIEKFLETVEEAIAIDGGVKFQERGIFEILTRQP 59

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          R+  N  T ++++I P++ V F+AS  +K
Sbjct: 60 RMVSNPVTREQMEIYPKKTVKFRASKKMK 88


>gi|294054815|ref|YP_003548473.1| histone family protein DNA-binding protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614148|gb|ADE54303.1| histone family protein DNA-binding protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 107

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 18/107 (16%)

Query: 5   ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVR----------GEA-IK----- 47
           +T+ +LV+++ KE GL S+ ++TR +  +      +  +          GE  +K     
Sbjct: 1   MTKIELVEALQKELGLESKAEATRTLDAVGAVYLKALKKAAKEIKKPKKGEPAVKPAVVA 60

Query: 48  -ISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            +     F+V     R GRN      V +  ++ + FKA+  +  ++
Sbjct: 61  PLPGVGNFYVGASAPRKGRNPLDGSTVNVKAKKKISFKAAPSISAKL 107


>gi|153208222|ref|ZP_01946632.1| DNA-binding protein BpH2 [Coxiella burnetii 'MSU Goat Q177']
 gi|120576127|gb|EAX32751.1| DNA-binding protein BpH2 [Coxiella burnetii 'MSU Goat Q177']
          Length = 149

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 8/93 (8%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISSFATFHVKQK---GS 61
           +S L   I++   LS+K+ +  +  L + +     +G      +       VK+K    +
Sbjct: 54  KSQLTTHIAEATNLSKKEVSAVLDELADVMHRHLRKGAAGEFTLPGLVKCTVKRKPATKA 113

Query: 62  RVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91
           R G N  T + +       R VV  +A   LK+
Sbjct: 114 RKGINPFTGEMMTFKAKPARNVVKVRALKRLKE 146


>gi|220923813|ref|YP_002499115.1| hypothetical protein Mnod_3912 [Methylobacterium nodulans ORS
          2060]
 gi|219948420|gb|ACL58812.1| hypothetical protein Mnod_3912 [Methylobacterium nodulans ORS
          2060]
          Length = 66

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 44 EAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
          EA+++       V+ KG RVGRN +T  EV I PRRV+VFK S++LK  +   + 
Sbjct: 9  EAVRLRLL---VVRDKGKRVGRNPKTGVEVAIAPRRVMVFKPSNVLKAHVTGGLA 60


>gi|68171780|ref|ZP_00545125.1| Histone-like bacterial DNA-binding protein [Ehrlichia chaffeensis
          str. Sapulpa]
 gi|88658424|ref|YP_507220.1| integration host factor, beta subunit [Ehrlichia chaffeensis str.
          Arkansas]
 gi|67998805|gb|EAM85512.1| Histone-like bacterial DNA-binding protein [Ehrlichia chaffeensis
          str. Sapulpa]
 gi|88599881|gb|ABD45350.1| integration host factor, beta subunit [Ehrlichia chaffeensis str.
          Arkansas]
          Length = 87

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S L++ ISK+   LS +  ++ +   F+ I D       +++  F +F V+      
Sbjct: 1  MLKSHLIQHISKKNPSLSEEIVSKILNIFFSLIVDYLKNDCRVELRGFGSFTVRSY---- 56

Query: 64 GRNLQT-NQEVKIDPRRVVVFKASSILKKRIMD 95
            N++T N  +     + V F+ASS   K I  
Sbjct: 57 --NIKTANARLAKSKYKKVYFRASSKFIKIINQ 87


>gi|67459159|ref|YP_246783.1| integration host factor beta-subunit [Rickettsia felis URRWXCal2]
 gi|67004692|gb|AAY61618.1| Integration host factor beta-subunit [Rickettsia felis URRWXCal2]
          Length = 80

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          +T++ L+  +  +   LS++D    V  + + +  S    E I+I +F  F ++++ 
Sbjct: 2  VTKNYLIDKVHDKLNYLSKEDVKDSVDLILDYLSRSLKEQERIEIRNFGNFSIRKRK 58


>gi|262037516|ref|ZP_06010975.1| DNA-binding protein HU [Leptotrichia goodfellowii F0264]
 gi|261748446|gb|EEY35826.1| DNA-binding protein HU [Leptotrichia goodfellowii F0264]
          Length = 57

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 41 VRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDP 77
           +GE ++   + TF V+++ +R GRN QT +E+KI  
Sbjct: 1  AKGETVQFVGWGTFGVQKRAARKGRNPQTGKEIKIAA 37


>gi|57239343|ref|YP_180479.1| putative integration host factor beta-subunit [Ehrlichia
          ruminantium str. Welgevonden]
 gi|58579309|ref|YP_197521.1| putative integration host factor beta-subunit [Ehrlichia
          ruminantium str. Welgevonden]
 gi|58617363|ref|YP_196562.1| putative integration host factor beta-subunit [Ehrlichia
          ruminantium str. Gardel]
 gi|57161422|emb|CAH58346.1| putative integration host factor beta subunit [Ehrlichia
          ruminantium str. Welgevonden]
 gi|58416975|emb|CAI28088.1| Putative Integration host factor beta-subunit [Ehrlichia
          ruminantium str. Gardel]
 gi|58417935|emb|CAI27139.1| Putative Integration host factor beta-subunit [Ehrlichia
          ruminantium str. Welgevonden]
          Length = 87

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 8/93 (8%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +S L++ ISK+   LS    +R + T F+ I +       +++  F  F V+      
Sbjct: 1  MLKSHLIQHISKKNPSLSEDIVSRILHTFFSLIVEYLKDNHRVELRGFGAFTVRTY---- 56

Query: 64 GRNLQTNQEVKIDPRR-VVVFKASSILKKRIMD 95
            N++T        +   V F+ S+   K I  
Sbjct: 57 --NIKTANTRLTKNKYQKVYFRPSNKFIKLINQ 87


>gi|253582550|ref|ZP_04859771.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251835420|gb|EES63960.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 92

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 33/71 (46%)

Query: 17 EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKID 76
          +  +    +T+ +      + ++ V+   +K     TF + ++  R+  N  T + +KI 
Sbjct: 18 KNNIDINQATKEIEIFLETLEEALVKYGKVKFVERGTFEIMERKPRIISNPSTRELMKIY 77

Query: 77 PRRVVVFKASS 87
          P++ V F+ S 
Sbjct: 78 PKKTVKFRVSK 88


>gi|57239022|ref|YP_180158.1| putative DNA-binding protein HU [Ehrlichia ruminantium str.
          Welgevonden]
 gi|58578963|ref|YP_197175.1| putative DNA-binding protein HU [Ehrlichia ruminantium str.
          Welgevonden]
 gi|58617020|ref|YP_196219.1| putative DNA-binding protein HU [Ehrlichia ruminantium str.
          Gardel]
 gi|57161101|emb|CAH58010.1| putative DNA-binding protein HU-beta [Ehrlichia ruminantium str.
          Welgevonden]
 gi|58416632|emb|CAI27745.1| Putative DNA-binding protein HU [Ehrlichia ruminantium str.
          Gardel]
 gi|58417589|emb|CAI26793.1| Putative DNA-binding protein HU [Ehrlichia ruminantium str.
          Welgevonden]
          Length = 94

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MSK +    +V+++  E GL++K S++    +   I ++      I++ +  T HV Q  
Sbjct: 1  MSKDM----VVRTLMAELGLTKKTSSQAYDLVMLNIQNALKTSHLIRLHNVGTLHVIQCA 56

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           +   N +T +   + P++ V F++S  L   I 
Sbjct: 57 EKKYHNPKTGKLETLSPKKRVRFRSSKKLSNSIN 90


>gi|198283420|ref|YP_002219741.1| histone family protein DNA-binding protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665856|ref|YP_002426013.1| DNA-binding protein, HU family [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198247941|gb|ACH83534.1| histone family protein DNA-binding protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518069|gb|ACK78655.1| DNA-binding protein, HU family [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 73

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 27/99 (27%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+TR +L+  +   FG S K     V + F+                           R 
Sbjct: 2   TVTRQELMDYLVDTFGFSHKGCAELVASFFS---------------------------RP 34

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           GRN  T    +I   RVV FKA   L++R    ++  + 
Sbjct: 35  GRNPGTGVPCEITACRVVTFKARPKLRQRCNPHVQDAEA 73


>gi|253582651|ref|ZP_04859872.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251835521|gb|EES64061.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 91

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 5  ITRSDLVKSISK--EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + + +K   K  +  ++  ++ + V    + I ++ +    IK      F V ++  R
Sbjct: 1  MNKLEFIKEYKKCYKKNITYTEAKKDVEAFLDLIENNIMNVGNIKFKEIGAFSVLERKER 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          V  N +T + + I P   V F  + + K+
Sbjct: 61 VISNPKTRERMTIYPLTTVKFIPTKVKKE 89


>gi|320101860|ref|YP_004177451.1| histone family protein DNA-binding protein [Isosphaera pallida ATCC
           43644]
 gi|319749142|gb|ADV60902.1| histone family protein DNA-binding protein [Isosphaera pallida ATCC
           43644]
          Length = 130

 Score = 58.8 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 43/97 (44%), Gaps = 8/97 (8%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAI-KISSFATFHVKQKGS-- 61
           T++++   +++   L++K        L   I +    +G  + +I +     V  + +  
Sbjct: 34  TKNEVFGKLAESTQLTKKQVAAVFEQLEKMIIEELGPKGSQVFQIPNLVKLSVTVRPATA 93

Query: 62  -RVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94
            ++GRN  T + +KI     R+ V  +   +LK+ + 
Sbjct: 94  EKMGRNPATGEPMKIAAKPARKAVKVRVLKMLKEAVE 130


>gi|188997008|ref|YP_001931259.1| histone family protein DNA-binding protein [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|237756708|ref|ZP_04585210.1| integration host factor subunit beta [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|188932075|gb|ACD66705.1| histone family protein DNA-binding protein [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|237691132|gb|EEP60238.1| integration host factor subunit beta [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 99

 Score = 58.8 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 10/103 (9%)

Query: 5   ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQKGSR 62
           + + D+VK I ++   +  K     V  +F  + ++  +GE I+I    +F V K+K   
Sbjct: 1   MKKPDIVKYIKEKHPEMDLKSIKDVVDEIFEVMAEALAKGEKIEIRKIGSFRVLKRKKPL 60

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD-DMRGRKCNK 104
            GR        ++   + V FK   +LK+ +    + G K  K
Sbjct: 61  KGRK-------RVSYSKTVHFKPGKVLKRALKSVSLEGEKNAK 96


>gi|254995187|ref|ZP_05277377.1| integration host factor, beta subunit [Anaplasma marginale str.
          Mississippi]
 gi|255003362|ref|ZP_05278326.1| integration host factor, beta subunit [Anaplasma marginale str.
          Puerto Rico]
 gi|255004485|ref|ZP_05279286.1| integration host factor, beta subunit [Anaplasma marginale str.
          Virginia]
          Length = 91

 Score = 58.8 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 7  RSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
          +SDL++ ++++   L     ++ V   F+ I      G  +++  F  F  +     V +
Sbjct: 4  KSDLIQRVARKNPSLGEAVVSQIVGIFFSSIVGCVSSGCRVELRGFGAFSTRHY---VLK 60

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93
          N   N  +     + V F+ S  L K +
Sbjct: 61 NHSLNSRLPKPTYKRVYFRPSEKLVKAV 88


>gi|85057552|ref|YP_456468.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789657|gb|ABC65389.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 122

 Score = 58.8 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 15/108 (13%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGS 61
           K + + +L+KSI++    S   +  F  +  N +  +    E + +SS    F +K + +
Sbjct: 11  KNMNKKELIKSIAEVNKTSITQTEEFYNSFENALIKAITSNEEVVLSSKIGKFILKTRKA 70

Query: 62  RVG------RNLQTNQE--------VKIDPRRVVVFKASSILKKRIMD 95
            +        N QT ++        +KI  + VV FK S  +K  +  
Sbjct: 71  HITPETKFIINKQTGKKTVKRTGKNLKIPAKTVVSFKMSKPIKDEVKK 118


>gi|88608036|ref|YP_506518.1| DNA-binding protein HU [Neorickettsia sennetsu str. Miyayama]
 gi|88600205|gb|ABD45673.1| DNA-binding protein HU [Neorickettsia sennetsu str. Miyayama]
          Length = 93

 Score = 58.8 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 42/86 (48%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +   DL+  +++   +S+  + R +  L+  I +S  R ++I+I    T  V +K +   
Sbjct: 1  MKNVDLINVVAEGASISKGHAKRAINALYEYIYESLKRRKSIRIPKIGTLSVVKKKATTY 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90
           + +T Q V+      V F  SS++K
Sbjct: 61 CDPKTKQMVRQAETERVKFTISSVVK 86


>gi|317064578|ref|ZP_07929063.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690254|gb|EFS27089.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 100

 Score = 58.8 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 41/94 (43%), Gaps = 1/94 (1%)

Query: 3  KTITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          K + + DLVK    +  + + +D+   +      +  + ++   +K      F +  +  
Sbjct: 5  KIMNKKDLVKIYKDKSKMENARDALADINDFIETLKKAILKDGTVKFHDNGIFEILVRKP 64

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +V  N  T + + I P++ V F+ S   K+ + +
Sbjct: 65 KVISNPSTRELITIYPKKTVRFRMSKGTKEGMNN 98


>gi|257468700|ref|ZP_05632794.1| hypothetical protein FulcA4_05120 [Fusobacterium ulcerans ATCC
          49185]
          Length = 88

 Score = 58.8 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 5  ITRSDLVKSISKEF--GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + + +L K   K     +S   + + +      + +S      +       F +  +  R
Sbjct: 1  MNKRELAKVYVKMSPKNISIVQAVKEIEEFLETLKESIALDNEVGFPKRGVFEILTRQPR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
          V  N  T + + + P++ V F+AS  +K
Sbjct: 61 VVANPVTRERMTVYPKKTVKFRASKKIK 88


>gi|239627561|ref|ZP_04670592.1| predicted protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517707|gb|EEQ57573.1| predicted protein [Clostridiales bacterium 1_7_47FAA]
          Length = 99

 Score = 58.8 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 41/89 (46%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
          + D+V  I++  G ++K +  F+    + + ++   GE   I    TF  + K   V  N
Sbjct: 4  KEDIVTRIARRSGHTKKATYEFMKAFGDILTETLADGERFHIHKVITFRPEYKEECVRYN 63

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           +T +EV I P   V     S L++ + D
Sbjct: 64 PKTREEVIIPPHIKVKTVIGSELERALFD 92


>gi|15604381|ref|NP_220897.1| hypothetical protein RP524 [Rickettsia prowazekii str. Madrid E]
 gi|14423682|sp|Q9ZD26|DBHL_RICPR RecName: Full=DNA-binding protein HU-like
 gi|3861073|emb|CAA14973.1| unknown [Rickettsia prowazekii]
 gi|292572136|gb|ADE30051.1| Integration host factor beta-subunit [Rickettsia prowazekii Rp22]
          Length = 80

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          +T++ L+  +  +   LS++D    V  + + + +S    + I+I +F  F ++++ 
Sbjct: 2  VTKNYLIDKVHDKLDYLSKQDVKESVDLILDYLNESLKEQKRIEIRNFGNFSIRKRK 58


>gi|2944015|gb|AAC05204.1| unknown [Rickettsia rickettsii str. 'Sheila Smith']
          Length = 90

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          IT++ L+  I  +   LS++D    V  + + + +S  + + I+I +F  F ++++ 
Sbjct: 2  ITKNYLIDKIHDKLNYLSKEDVKDSVDLILDYLNESLKQQKRIEIRNFGNFSIRKRK 58


>gi|257469615|ref|ZP_05633707.1| histone family protein DNA-binding protein [Fusobacterium
          ulcerans ATCC 49185]
          Length = 88

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 5  ITRSDLVKSISKEFGLSR---KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + +  L   + +E  L      +S + +      + ++ +    +K +    F +  + S
Sbjct: 1  MNKRSLA-KLYREMSLRTLVLSESIKEIDIFLETLEEALLVDGEVKFTKVGVFEILTRKS 59

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          RV  N  T + + I P++ V F+ S  +K
Sbjct: 60 RVIANPVTKEPMMIYPKKTVKFRVSKKMK 88


>gi|253582650|ref|ZP_04859871.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251835520|gb|EES64060.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 101

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 37/84 (44%)

Query: 21  SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80
           S +++   V T +  +  S   GE +K   +  F +K+   R    LQT +E+ I   R 
Sbjct: 18  SLEEAKEKVDTFWKTLKTSLENGEKVKFKDWGNFEMKEVRPRKIIELQTKKEIIIPKSRK 77

Query: 81  VVFKASSILKKRIMDDMRGRKCNK 104
           + F +   L K +    +  K N+
Sbjct: 78  IKFTSGKGLVKSVNVKCKEGKINE 101


>gi|254796988|ref|YP_003081825.1| DNA-binding protein HU [Neorickettsia risticii str. Illinois]
 gi|254590174|gb|ACT69536.1| DNA-binding protein HU [Neorickettsia risticii str. Illinois]
          Length = 98

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 5  ITRS-----DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          +T+      DL+  +++   +S+  + R +  L+  I +S    ++++I    T  V +K
Sbjct: 1  MTKEVVKNVDLINVVAEGASISKGHAKRAINALYEYIYESLKHRKSVRIPKVGTLSVVKK 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
           +    + +T Q V+      V F  SS++K
Sbjct: 61 KATTYCDPKTKQMVRQAETERVKFTISSVVK 91


>gi|330884084|gb|EGH18233.1| single-stranded binding protein [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 71

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 29/71 (40%)

Query: 27 RFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKAS 86
          + +  L   + D    G  I +       V ++ +R GRN  T   ++I  ++ + F  +
Sbjct: 1  KALEQLGQIVADQLESGAEITLPGIGKLKVAERPARTGRNPSTGAAIEIAAKKAIKFVPA 60

Query: 87 SILKKRIMDDM 97
           +L   I   +
Sbjct: 61 KVLNDLINKGL 71


>gi|149177891|ref|ZP_01856489.1| DNA-binding protein HU, putative [Planctomyces maris DSM 8797]
 gi|148843231|gb|EDL57596.1| DNA-binding protein HU, putative [Planctomyces maris DSM 8797]
          Length = 129

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 47/100 (47%), Gaps = 9/100 (9%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAI-KISSFATFHVKQKG 60
           K +T+++++ ++++  GL++K+ T  +  L + I  +   RG  +  +       V++K 
Sbjct: 30  KPLTKTEILNALAEGSGLTKKEVTAVLDELSSLISKNLGKRGPGVFNMPGLLKIQVQRKP 89

Query: 61  SRVGR---NL-QTNQEVKI---DPRRVVVFKASSILKKRI 93
           +       N  +  + +++     R VV  +    LK+ +
Sbjct: 90  ATKATTRPNPFKPGEMMQVAAKPARNVVKVRPLKALKEMV 129


>gi|91205550|ref|YP_537905.1| integration host factor beta-subunit [Rickettsia bellii RML369-C]
 gi|91069094|gb|ABE04816.1| Integration host factor beta-subunit [Rickettsia bellii RML369-C]
          Length = 88

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 6  TRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          T+ DL+  I K+   LS++D +  V  + N + +S      I+I +F  F ++ + 
Sbjct: 11 TKIDLINKIHKQLDYLSKEDVSDSVNLILNYLSNSLKEQNRIEIRNFGNFSIRTRK 66


>gi|225849333|ref|YP_002729497.1| integration host factor subunit beta [Sulfurihydrogenibium
          azorense Az-Fu1]
 gi|225643457|gb|ACN98507.1| integration host factor, beta subunit [Sulfurihydrogenibium
          azorense Az-Fu1]
          Length = 90

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + +SD+VK + ++   +  K+  + V  +F+++ +    GE I+I    TF V ++   +
Sbjct: 1  MKKSDIVKILKEKYTNIDSKEIKKVVDAIFDKMIEGLASGEKIEIRKLGTFKVLKRKKPL 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
                  + ++   + V FK   ILK+ 
Sbjct: 61 ------KGKKRVSYSKTVHFKPGKILKRA 83


>gi|257470624|ref|ZP_05634714.1| histone-like DNA-binding phage protein [Fusobacterium ulcerans
          ATCC 49185]
 gi|317064830|ref|ZP_07929315.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690506|gb|EFS27341.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 90

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 5  ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + +   +K   + +   ++  D+ + V    N I D+ V   +IK     TF + ++  R
Sbjct: 1  MDKLQFIKKYKENYEKRITNADAKKDVEAFLNLIEDNIVEAGSIKFKGVGTFSLLKRKPR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSI 88
          V  N +T + + I P  +V F  + +
Sbjct: 61 VISNPKTRERMTIYPLPIVKFIPTKV 86


>gi|317065089|ref|ZP_07929574.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690765|gb|EFS27600.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 91

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFV---TTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + + +  K+  ++           +         + ++      +K     TF V  +  
Sbjct: 4  MNKREFAKT-YRKISPYEATIETVLTDIDIFLETLREALQIEGEVKFVKRGTFEVISRQP 62

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          RV  N  T + + + P+++V F+AS  +K
Sbjct: 63 RVISNPVTRERMTVYPKKIVRFRASKKIK 91


>gi|51473705|ref|YP_067462.1| integration host factor beta subunit [Rickettsia typhi str.
          Wilmington]
 gi|51460017|gb|AAU03980.1| integration host factor beta subunit [Rickettsia typhi str.
          Wilmington]
          Length = 80

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 6  TRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          T++ L+  +  +   LS++D    V  + + + +S    + I+I +F  F ++++ 
Sbjct: 3  TKNYLIDKVHDKLNYLSKQDVKESVDLILDYLNESLKEQKRIEIRNFGNFSIRKRK 58


>gi|15892680|ref|NP_360394.1| integration host factor beta-subunit [Rickettsia conorii str.
          Malish 7]
 gi|20137863|sp|Q92HL4|DBHL_RICCN RecName: Full=DNA-binding protein HU-like
 gi|15619852|gb|AAL03295.1| integration host factor beta-subunit [Rickettsia conorii str.
          Malish 7]
          Length = 80

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          IT++ L+  I  +   LS++D    V  + + + +S  + + I+I +F  F ++++ 
Sbjct: 2  ITKNYLIDKIHDKLNCLSKEDVKDSVDLILDYLNESLKKQKRIEIRNFGNFSIRKRK 58


>gi|34581629|ref|ZP_00143109.1| integration host factor beta-subunit [Rickettsia sibirica 246]
 gi|229586789|ref|YP_002845290.1| Integration host factor beta-subunit [Rickettsia africae ESF-5]
 gi|28263014|gb|EAA26518.1| integration host factor beta-subunit [Rickettsia sibirica 246]
 gi|228021839|gb|ACP53547.1| Integration host factor beta-subunit [Rickettsia africae ESF-5]
          Length = 80

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          IT++ L+  I  +   LS++D    V  + + + +S  + + I+I +F  F ++++ 
Sbjct: 2  ITKNYLIDKIHDKLNYLSKEDVKDSVDLILDYLNESLKKQKRIEIRNFGNFSIRKRK 58


>gi|330880309|gb|EGH14458.1| HU family DNA-binding protein [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
          Length = 66

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 25/65 (38%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+   +  I++     +  + + +  L   + D    G  I +       V ++ +R 
Sbjct: 2  ALTKDQFIAVIAEAIDAPKNTTGKALEQLGQIVADQLGNGAEITLPGIGKLKVAERPART 61

Query: 64 GRNLQ 68
          GR+  
Sbjct: 62 GRHPS 66


>gi|257470887|ref|ZP_05634977.1| hypothetical protein FulcA4_16199 [Fusobacterium ulcerans ATCC
          49185]
          Length = 88

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFV---TTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + + +  K+  ++           +         + ++      +K     TF V  +  
Sbjct: 1  MNKREFAKT-YRKISPYEATIETVLTDIDIFLETLREALQIEGEVKFVKRGTFEVISRQP 59

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          RV  N  T + + + P+++V F+AS  +K
Sbjct: 60 RVISNPVTRERMTVYPKKIVRFRASKKIK 88


>gi|257470369|ref|ZP_05634460.1| hypothetical protein FulcA4_13577 [Fusobacterium ulcerans ATCC
          49185]
          Length = 94

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 40/92 (43%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          + + DLVK    +  + + +D+   +      +  + ++   +K      F +  +  +V
Sbjct: 1  MNKKDLVKIYKDKSKMENARDALADINDFIETLKKAILKDGTVKFHDNGIFEILVRKPKV 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            N  T + + I P++ V F+ S   K+ + +
Sbjct: 61 ISNPSTRELITIYPKKTVRFRMSKGTKEGMNN 92


>gi|255961253|ref|YP_003097811.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
           OY-M]
 gi|162809323|dbj|BAF95568.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
           OY-M]
          Length = 110

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 19/108 (17%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGS-- 61
           + + +L+KSI++    S   +  F  +  N +  +    E + +SS    F +K + +  
Sbjct: 1   MNKKELIKSIAEVNKTSITQTEEFYNSFENALIKAITSNEEVVLSSKIGKFILKTRKAHT 60

Query: 62  --------------RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
                         + G+  +T + +KI  + VV FK S  +K  +  
Sbjct: 61  TPETKFIINKQTGKKTGK--RTGKNLKIPAKTVVSFKMSKPIKDEVKK 106


>gi|157828573|ref|YP_001494815.1| integration host factor beta-subunit [Rickettsia rickettsii str.
          'Sheila Smith']
 gi|165933287|ref|YP_001650076.1| hypothetical protein RrIowa_0832 [Rickettsia rickettsii str.
          Iowa]
 gi|238651133|ref|YP_002916075.1| integration host factor beta-subunit [Rickettsia peacockii str.
          Rustic]
 gi|166214917|sp|O68451|DBHL_RICRS RecName: Full=DNA-binding protein HU-like
 gi|157801054|gb|ABV76307.1| integration host factor beta-subunit [Rickettsia rickettsii str.
          'Sheila Smith']
 gi|165908374|gb|ABY72670.1| hypothetical protein RrIowa_0832 [Rickettsia rickettsii str.
          Iowa]
 gi|238625231|gb|ACR47937.1| integration host factor beta-subunit [Rickettsia peacockii str.
          Rustic]
          Length = 80

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          IT++ L+  I  +   LS++D    V  + + + +S  + + I+I +F  F ++++ 
Sbjct: 2  ITKNYLIDKIHDKLNYLSKEDVKDSVDLILDYLNESLKQQKRIEIRNFGNFSIRKRK 58


>gi|257470392|ref|ZP_05634483.1| hypothetical protein FulcA4_13692 [Fusobacterium ulcerans ATCC
          49185]
          Length = 93

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 4/91 (4%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFV---TTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + +      + ++    + D  R +         I ++ +    IK     TF + ++  
Sbjct: 1  MNKRRFA-KVYRDLSNEKIDINRALKEIENFLKTIEEALIADGKIKFIEKGTFEILERKP 59

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          R+  N  T + + I P++ V F +S  L K+
Sbjct: 60 RIISNPLTRELMTIYPKKSVKFTSSKKLNKK 90


>gi|154492265|ref|ZP_02031891.1| hypothetical protein PARMER_01899 [Parabacteroides merdae ATCC
          43184]
 gi|154087490|gb|EDN86535.1| hypothetical protein PARMER_01899 [Parabacteroides merdae ATCC
          43184]
          Length = 384

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 34/95 (35%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+  +   DL   +++  G  +  S RF+      + +     + +K+    TF +    
Sbjct: 1  MNNRLAIQDLAGLLAEYTGKDKNSSERFLREFIAVVSEGVYTDKLVKVKGLGTFKIIPVE 60

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R   ++ T +   I       F     L++ +  
Sbjct: 61 KRESIHVNTGERFVIPEHYKFSFLPDKELRELVNK 95


>gi|99036035|ref|ZP_01315073.1| hypothetical protein Wendoof_01000090 [Wolbachia endosymbiont of
          Drosophila willistoni TSC#14030-0811.24]
          Length = 92

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 6  TRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          T+SD++  ++K    L +      V   F  +  +      ++I  F +F V+   
Sbjct: 3  TKSDIIARVAKRHPFLDKVVIAAIVDRFFGILSSTLKHHNRVEIRGFGSFSVRSYN 58


>gi|157964585|ref|YP_001499409.1| integration host factor beta-subunit [Rickettsia massiliae MTU5]
 gi|157844361|gb|ABV84862.1| Integration host factor beta-subunit [Rickettsia massiliae MTU5]
          Length = 81

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          IT++ L+  I  +   LS++D    V  + + + +S    + I+I +F  F ++++ 
Sbjct: 3  ITKNYLIDKIHDKLNYLSKEDVKDSVDLILDYLNESLKEQKRIEIRNFGNFSIRKRK 59


>gi|255690919|ref|ZP_05414594.1| putative non-specific DNA-binding protein HU-1 [Bacteroides
           finegoldii DSM 17565]
 gi|260623561|gb|EEX46432.1| putative non-specific DNA-binding protein HU-1 [Bacteroides
           finegoldii DSM 17565]
          Length = 137

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 8/92 (8%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ---KGSR 62
           T++  V+ ++ +  LS+ D+ + +T +   I      G  + +  F +F +     K  +
Sbjct: 34  TKA-FVEYLADKNNLSKGDAYKNLTMVLEGIEAVLKNGNILNLDDFGSFSLNGSFCKDKQ 92

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            G N +  + ++I   + VVFKA   LKKRI 
Sbjct: 93  PGENHR-AESIEI---KNVVFKAEKQLKKRIA 120


>gi|331007234|ref|ZP_08330441.1| putative DNA-binding protein HU [gamma proteobacterium IMCC1989]
 gi|330418950|gb|EGG93409.1| putative DNA-binding protein HU [gamma proteobacterium IMCC1989]
          Length = 121

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 10/95 (10%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQKGSR 62
           T++ +V  I++   L++K     +  L + +     +   GE + +         +K +R
Sbjct: 25  TKTQMVAQIAENTELTKKQVQSVLDELSDLMEGHIKKRACGEFV-LPGLMKIVTVKKPAR 83

Query: 63  VGR---NLQTNQEVKI---DPRRVVVFKASSILKK 91
             R   N    +E           V  +    LK+
Sbjct: 84  KARKGINPFNGEETTFAAKPASTAVKIRPLKKLKE 118


>gi|42520895|ref|NP_966810.1| HU family DNA-binding protein [Wolbachia endosymbiont of
          Drosophila melanogaster]
 gi|42410636|gb|AAS14744.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
          Drosophila melanogaster]
          Length = 92

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 6  TRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          T+SD++  ++K    L +      V   F  +  +      ++I  F +F V+   
Sbjct: 3  TKSDIIARVAKRHPFLDKIVIAAIVDRFFGILSSTLKHHNRVEIRGFGSFSVRSYN 58


>gi|325989777|ref|YP_004249476.1| Histone-like DNA-binding superfamily protein HimA [Mycoplasma
          suis KI3806]
 gi|323574862|emb|CBZ40522.1| Histone-like DNA-binding superfamily protein HimA/HU/Integration
          host factor (himA/hup_2) [Mycoplasma suis]
          Length = 92

 Score = 56.8 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 27/84 (32%)

Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQE 72
           IS E GL++      +                + +       + ++  R G N  T + 
Sbjct: 2  KISGETGLTKDQIDSVLKAYQAITIAEMKEQGEVNVLEIGKIKISRRPERKGVNFMTKEP 61

Query: 73 VKIDPRRVVVFKASSILKKRIMDD 96
          + I    V  F  S  LK+   + 
Sbjct: 62 MVIPAANVAKFSFSKKLKEAASES 85


>gi|58698449|ref|ZP_00373358.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
          Drosophila ananassae]
 gi|225630819|ref|YP_002727610.1| DNA-binding protein, HU family [Wolbachia sp. wRi]
 gi|58535041|gb|EAL59131.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
          Drosophila ananassae]
 gi|225592800|gb|ACN95819.1| DNA-binding protein, HU family [Wolbachia sp. wRi]
          Length = 92

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 6  TRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          T+SD++  ++K    L +      V   F  +  +      ++I  F +F V+   
Sbjct: 3  TKSDIIARVAKRHPFLDKIVIAAIVDRFFGILSSTLKHHNRVEIRGFGSFSVRSYN 58


>gi|254785041|ref|YP_003072469.1| DNA-binding protein BpH2 [Teredinibacter turnerae T7901]
 gi|237683728|gb|ACR10992.1| DNA-binding protein BpH2 [Teredinibacter turnerae T7901]
          Length = 147

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQKGSRV 63
           ++ ++  I++   LSRK  T  +  L + I     +   GE + +       V++K +R 
Sbjct: 52  KTQILNQIAENTELSRKQVTAVLDELSDIIEGHVKKRSCGEFV-MPGLFKIVVQKKPARK 110

Query: 64  GR---NLQTNQEVKI---DPRRVVVFKASSILKK 91
            R   N  T +E           V  +    LK+
Sbjct: 111 ARKGINPFTGEETVFAAKPASNAVKIRPLKKLKE 144


>gi|253584117|ref|ZP_04861315.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251834689|gb|EES63252.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 97

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 5  ITRSDLVKSISKEFGLSR--KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T  + +    K    SR  K++   +   +N I  +      + + ++  F  K+  +R
Sbjct: 1  MTEKEFI-KFYKRRNFSRNHKEAKEKIDLFWNAILKALEEDGKVVLKNWGRFEKKEVKAR 59

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
               + N+ V  + ++ + F+  + L+  +  
Sbjct: 60 KIVIPKMNEAVITEAKKKIRFRTGTGLQDAVNG 92


>gi|257470623|ref|ZP_05634713.1| histone family protein DNA-binding protein [Fusobacterium ulcerans
           ATCC 49185]
 gi|317064829|ref|ZP_07929314.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690505|gb|EFS27340.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 101

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 35/80 (43%)

Query: 24  DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVF 83
           ++   V   +  + +S  +GE +K   +  F +K    R    L+T +++ I   R + F
Sbjct: 21  EAKEKVNIFWKTVKESLEKGEKVKFKDWGNFEMKDVRPRRIIELKTKRDMTIPGSRKMKF 80

Query: 84  KASSILKKRIMDDMRGRKCN 103
            +   L K I + +   K +
Sbjct: 81  SSGKGLIKSINNKIEEGKID 100


>gi|157827266|ref|YP_001496330.1| integration host factor beta-subunit [Rickettsia bellii OSU
          85-389]
 gi|157802570|gb|ABV79293.1| Integration host factor beta-subunit [Rickettsia bellii OSU
          85-389]
          Length = 88

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 6  TRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          T+ DL+  I K+   LS++D +  V  + N + +S      I+I +F  F ++ + 
Sbjct: 11 TKIDLINKIHKQLDYLSKEDVSDSVNLILNYLSNSLKEQNCIEIRNFGNFSIRTRK 66


>gi|160872720|ref|ZP_02062852.1| DNA-binding protein BpH2 [Rickettsiella grylli]
 gi|159121519|gb|EDP46857.1| DNA-binding protein BpH2 [Rickettsiella grylli]
          Length = 129

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK--- 59
           K+ T+++L++ + +   L +K     + TL   +      G A          V +K   
Sbjct: 33  KSFTKTELLQCLVESTELPKKKIAEVLETLQMIMHAHVKAGCAFAHPGLYKITVVKKPAT 92

Query: 60  GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
            +R G N  T +         R+VV  K    LK  +
Sbjct: 93  KARKGINPFTGEPTTFKAKPARKVVKIKPLKKLKAAV 129


>gi|190571428|ref|YP_001975786.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
          quinquefasciatus Pel]
 gi|213018826|ref|ZP_03334634.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
          quinquefasciatus JHB]
 gi|190357700|emb|CAQ55149.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
          quinquefasciatus Pel]
 gi|212995777|gb|EEB56417.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
          quinquefasciatus JHB]
          Length = 92

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 2/91 (2%)

Query: 6  TRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          T+SD++  ++K+   L +      V + F    ++      ++I  F +F ++    +  
Sbjct: 3  TKSDIIAKVAKKNLLLDKVIIAAIVDSFFRVFSNTLKYHNRVEIRGFGSFSIRSYNLKEA 62

Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           NL T+Q+V         F++S  L   I +
Sbjct: 63 SNL-TSQKVAKHQYFKTYFRSSKKLSLLINE 92


>gi|85057472|ref|YP_456388.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789577|gb|ABC65309.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 110

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 15/106 (14%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGSRV 63
           + + +L+KSI++    S   +  F  +  N +  +    E + +SS    F +K + + +
Sbjct: 1   MNKKELIKSIAEVNKTSITQTEEFYNSFENALIKAITSNEEVVLSSKIGKFILKTRKAHI 60

Query: 64  G------RNLQTNQE--------VKIDPRRVVVFKASSILKKRIMD 95
                   N QT ++        +KI  + VV FK S  +K  +  
Sbjct: 61  TPETKFIINKQTGKKTVKRTGKNLKIPAKTVVSFKMSKPIKDEVKK 106


>gi|192361184|ref|YP_001982926.1| DNA-binding protein HU family [Cellvibrio japonicus Ueda107]
 gi|190687349|gb|ACE85027.1| DNA-binding protein HU family [Cellvibrio japonicus Ueda107]
          Length = 159

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 10/95 (10%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQK--- 59
            +S +V+ I     LS+K     +  L N I     +   GE + +         +K   
Sbjct: 63  NKSQIVQQIVDATELSKKQVQAVLDELSNVIEGHIKKKGVGEFV-LPGLLKITTVKKPAT 121

Query: 60  GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91
            +R G N  T +EV          V  +A   LK+
Sbjct: 122 KARKGINPFTGEEVTFKAKPASTSVKVRALKKLKE 156


>gi|317064600|ref|ZP_07929085.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690276|gb|EFS27111.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 96

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFV---TTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          K + +      + ++    + D  R +         I ++ +    IK     TF + ++
Sbjct: 2  KAVNKRRFA-KVYRDLSNEKIDINRALKEIENFLKTIEEALIADGKIKFIEKGTFEILER 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
            R+  N  T + + I P++ V F +S  L K+
Sbjct: 61 KPRIISNPLTRELMTIYPKKSVKFTSSKKLNKK 93


>gi|304312892|ref|YP_003812490.1| hypothetical protein HDN1F_32740 [gamma proteobacterium HdN1]
 gi|301798625|emb|CBL46857.1| Hypothetical protein HDN1F_32740 [gamma proteobacterium HdN1]
          Length = 153

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQKG---S 61
           ++ ++  I++  GL++K     +  L + I      +G     +       V  K    +
Sbjct: 58  KTQILSEIAENTGLAKKQVQGVLDELNSLIARHIGKKGVGQFTVPGLMKITVVNKPATRA 117

Query: 62  RVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91
           R G N  T +E        R VV  +    LK 
Sbjct: 118 RKGINPFTGEETTFKAKPARNVVKVRPLKKLKD 150


>gi|157825821|ref|YP_001493541.1| integration host factor beta-subunit [Rickettsia akari str.
          Hartford]
 gi|157799779|gb|ABV75033.1| Integration host factor beta-subunit [Rickettsia akari str.
          Hartford]
          Length = 82

 Score = 56.1 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          +T++ L+  + ++   L+++D    V  + + +  S    E I+I +F  F ++++ 
Sbjct: 2  VTKNYLIDKVHEKLNYLAKEDVKDSVDLILDYLSRSLKEQERIEIRNFCNFSIRKRK 58


>gi|330870883|gb|EGH05592.1| hypothetical protein PSYAE_27258 [Pseudomonas syringae pv.
          aesculi str. 0893_23]
          Length = 46

 Score = 56.1 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 52 ATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
              V ++ +R GRN  T   ++I  ++VV F ++ +L   I   
Sbjct: 2  GKLKVAERPARTGRNPSTGAAIEIAAKKVVKFVSAKVLNDAINKG 46


>gi|257470393|ref|ZP_05634484.1| hypothetical protein FulcA4_13697 [Fusobacterium ulcerans ATCC
           49185]
 gi|317064601|ref|ZP_07929086.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690277|gb|EFS27112.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 125

 Score = 56.1 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 5   ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T ++ +K   +  GL S+K++   +   +  +  +    + +   ++  F  K   SR 
Sbjct: 28  MTETEFIKFYKERNGLKSKKEAKEKIDNFWKALFKAIDEDKKVVFKNWGIFEEKDVKSRK 87

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
               +  +E+   P++V+ F+A   LK  +
Sbjct: 88  IVIPKHPKEIYTQPKKVLKFRAGEGLKNSV 117


>gi|162456561|ref|YP_001618928.1| histone-like protein [Sorangium cellulosum 'So ce 56']
 gi|161167143|emb|CAN98448.1| histone-like protein [Sorangium cellulosum 'So ce 56']
          Length = 111

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 8/100 (8%)

Query: 2   SKTITRSDLVKSI--SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           S ++++S L+ ++  + E  +SRK     + +L +       +     +  FA F V +K
Sbjct: 11  STSLSKSALINAVVEANENEISRKQVKAILESLTDIAYKELKKNGIFTMPGFAKFRVVKK 70

Query: 60  ---GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
               +R G N  T Q +        + V  +    +K  +
Sbjct: 71  PATKAREGINPFTKQPMTFAAKPASKSVRARPIKAIKDSL 110


>gi|269958577|ref|YP_003328364.1| putative integration host factor [Anaplasma centrale str. Israel]
 gi|269848406|gb|ACZ49050.1| putative integration host factor [Anaplasma centrale str. Israel]
          Length = 91

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 12/92 (13%)

Query: 7  RSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV-G 64
          +SDL++ +S+    L     ++ V   F+ I      G  +++  F  F  +    +  G
Sbjct: 4  KSDLIQRVSRRNPSLGEAVVSQIVGIFFSSIVSCISSGHRVELRGFGAFSTRHYVLKDHG 63

Query: 65 RN---LQTNQEVKIDPRRVVVFKASSILKKRI 93
           N    +          + V F+ S  L K +
Sbjct: 64 LNSRLPK-------ATYKRVYFRPSEKLVKAV 88


>gi|254362481|ref|ZP_04978589.1| DNA-binding protein HU [Mannheimia haemolytica PHL213]
 gi|153094073|gb|EDN74985.1| DNA-binding protein HU [Mannheimia haemolytica PHL213]
          Length = 37

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          ++ +R GRN +T +E+KI   +V  F +   LK  + 
Sbjct: 1  ERKARTGRNPKTGEEIKIAAAKVPAFVSGKALKDLVK 37


>gi|254281566|ref|ZP_04956534.1| bacterial DNA-binding protein [gamma proteobacterium NOR51-B]
 gi|219677769|gb|EED34118.1| bacterial DNA-binding protein [gamma proteobacterium NOR51-B]
          Length = 139

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 10/98 (10%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQK 59
           + +T++ +V SI++  GL++K     +  L + I  S  +   GE   +         +K
Sbjct: 39  EKMTKTQIVGSIAESTGLNKKQVGDVLGELESLIQGSIKKRAVGE-FTLPGLMKVTTVRK 97

Query: 60  ---GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91
               +R G N  T +E           V  +    +K+
Sbjct: 98  PAVKARKGINPFTGEETMFKAKPASTAVKIRPLKKMKE 135


>gi|224024933|ref|ZP_03643299.1| hypothetical protein BACCOPRO_01664 [Bacteroides coprophilus DSM
          18228]
 gi|224018169|gb|EEF76167.1| hypothetical protein BACCOPRO_01664 [Bacteroides coprophilus DSM
          18228]
          Length = 385

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 36/95 (37%), Gaps = 16/95 (16%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M++ +T   L + ++    + + D+  FV T    I ++  + + +K+    TF +    
Sbjct: 1  MNEKVTLQALAEQLASRHQMEQADAEAFVQTFVALIEEALQQEKYVKVKGLGTFKL---- 56

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
                      +++     V F   + L+  I  
Sbjct: 57 ------------IEMSGHNRVSFVPEASLRDLINK 79


>gi|253584285|ref|ZP_04861483.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251834857|gb|EES63420.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 96

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 23 KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVV 82
          K++   +   +N +  +    E++ + ++ TF  K+  +R      T + +    ++V+ 
Sbjct: 20 KEAKEKIDLFWNVLLKALEE-ESVILKNWGTFEKKEVKARKVIIPNTEKAITTKAKKVIK 78

Query: 83 FKASSILKKRIMD 95
          F+A   L+  +  
Sbjct: 79 FRAGKGLRNIVNG 91


>gi|282858797|ref|ZP_06267943.1| hypothetical protein HMPREF0648_1395 [Prevotella bivia
          JCVIHMP010]
 gi|282588425|gb|EFB93584.1| hypothetical protein HMPREF0648_1395 [Prevotella bivia
          JCVIHMP010]
          Length = 100

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR-NL 67
          +L++   +  GLS++   + + +L   I ++   G+ I + +F +F ++           
Sbjct: 12 ELLQKAKERSGLSKEVLRQSLHSLLGVISEALDDGKCIVLDNFGSFDLRTVKEHTVTPPP 71

Query: 68 QTNQEVKIDPRRVVVFKASS 87
            N+ + +   +VV FK   
Sbjct: 72 PNNKPIVVPEHQVVRFKPYK 91


>gi|257468326|ref|ZP_05632422.1| hypothetical protein FulcA4_03244 [Fusobacterium ulcerans ATCC
          49185]
 gi|317062603|ref|ZP_07927088.1| ABC transporter [Fusobacterium ulcerans ATCC 49185]
 gi|313688279|gb|EFS25114.1| ABC transporter [Fusobacterium ulcerans ATCC 49185]
          Length = 103

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 39/92 (42%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T  + +    +   L S +++   + + +  + D     E + I  +  F  K+   R 
Sbjct: 1  MTEKEFLTLYKERRNLKSIREAKERLDSFWKALFDVLAEEEKVIIKDWGIFEKKEVKPRK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            NL T + +  + ++V+ FK    +  ++ +
Sbjct: 61 ILNLATREMMITEEKKVIKFKPRMKMIDKVNE 92


>gi|237742453|ref|ZP_04572934.1| predicted protein [Fusobacterium sp. 4_1_13]
 gi|229430101|gb|EEO40313.1| predicted protein [Fusobacterium sp. 4_1_13]
          Length = 118

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query: 2   SKTITRSD----LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE--AIKISSFATFH 55
             ++ +++     +K  +K    S +++          I ++    E   I +    +F 
Sbjct: 6   GDSMIKNEGYIIFLKEYAKISNFSIEEAEELTKNFIEAIRNTLSNYEIQNILLKRLGSFI 65

Query: 56  VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           V ++  R G      + V    ++ + FK S   K++I ++++ RK     V
Sbjct: 66  VHEQKERSGTLFGKKEVVTFPAKKAIKFKFSRNAKEKIEENIKKRKKKNGGV 117


>gi|260588231|ref|ZP_05854144.1| putative DNA-binding protein HU-alpha [Blautia hansenii DSM 20583]
 gi|260541369|gb|EEX21938.1| putative DNA-binding protein HU-alpha [Blautia hansenii DSM 20583]
          Length = 117

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 38/96 (39%), Gaps = 5/96 (5%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA---VRGEAIKISSFATFHVKQK-- 59
           +T  ++VK +++  G ++K+    +  + + +           +++I  F   +V  +  
Sbjct: 22  MTTKEMVKGVAELTGKTQKEVREVLDGIEDVVMAQVGQATEDNSVEIRLFNGLYVTSEFV 81

Query: 60  GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
                RN +T +    + +  V  K  + LK     
Sbjct: 82  APHTARNPRTGETFTAEGKNRVKAKIGAALKNAANQ 117


>gi|118580695|ref|YP_901945.1| integration host factor subunit alpha [Pelobacter propionicus DSM
          2379]
 gi|118503405|gb|ABK99887.1| integration host factor, alpha subunit [Pelobacter propionicus
          DSM 2379]
          Length = 57

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 29/48 (60%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFA 52
          +T++D+V+ I ++ G ++KD    + T+F+ +  +   GE +KI+   
Sbjct: 7  VTKADIVERIYEKTGFAKKDCADLLETVFDIMKATLEAGEKLKIAGRG 54


>gi|257469296|ref|ZP_05633390.1| hypothetical protein FulcA4_08142 [Fusobacterium ulcerans ATCC
          49185]
 gi|317063544|ref|ZP_07928029.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689220|gb|EFS26055.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 103

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 39/92 (42%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T  + +    +   L S +++   + + +  + D     E + I  +  F  K+   R 
Sbjct: 1  MTEKEFLTLYKERRNLKSIREAKERLDSFWKALFDVLEEEEKVIIKDWGIFEKKEVKPRK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            NL T + +  + ++V+ FK    +  ++ +
Sbjct: 61 ILNLATREMMITEEKKVIKFKPRMKMIDKVNE 92


>gi|257467762|ref|ZP_05631858.1| hypothetical protein FulcA4_00412 [Fusobacterium ulcerans ATCC
          49185]
 gi|317062053|ref|ZP_07926538.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313687729|gb|EFS24564.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 103

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 39/92 (42%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T  + +    +   L S +++   + + +  + D     E + I  +  F  ++   R 
Sbjct: 1  MTEKEFLTLYKERRNLKSIREAKERLDSFWKALFDVLEEEEKVIIKDWGIFEKREVKPRK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            NL T + +  + ++V+ F+    +  ++ +
Sbjct: 61 ILNLATREMMVTEEKKVIKFRPRMKMIDKVNE 92


>gi|253582641|ref|ZP_04859862.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251835511|gb|EES64051.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 97

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 5  ITRSDLVKSISKEFGLSR--KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T ++ +    K    S+  K++   +   +N +  +    E + + ++ TF  K+   R
Sbjct: 1  MTEAEFI-RYYKRRNKSKNYKEAKEKIDLFWNSLLKALGEAEKVSLKNWGTFEKKEVKPR 59

Query: 63 VGRNLQTNQEVKI-DPRRVVVFKASSILKKRIMD 95
                  ++V I   ++V+ FKA + L+  + +
Sbjct: 60 RIVIP-NMEKVTITKAKKVIKFKAGAGLRNVVNE 92


>gi|90020558|ref|YP_526385.1| DNA-binding protein HU [Saccharophagus degradans 2-40]
 gi|89950158|gb|ABD80173.1| histone-like DNA-binding protein [Saccharophagus degradans 2-40]
          Length = 135

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 8/93 (8%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQ--KGS 61
           ++ ++  I++   L++K     +  L + I     +   GE +    F    VK+  + +
Sbjct: 40  KTQMLTQIAENTELTKKQVQSVLDELTDIIEGHVKKRACGEFVMPGLFKILTVKKPARKA 99

Query: 62  RVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91
           R G N  T +E           V  +    LK+
Sbjct: 100 RKGINPFTGEETTFAAKPASIQVKIRPLKKLKE 132


>gi|330952800|gb|EGH53060.1| hypothetical protein PSYCIT7_15803 [Pseudomonas syringae Cit 7]
          Length = 43

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 5/42 (11%), Positives = 21/42 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAI 46
          + +S+L+ +I+    + +  + R +  +   +  +   G+++
Sbjct: 1  MNKSELIDAIAASADIPKAAAGRALDAVIESVTGALKAGDSV 42


>gi|171913744|ref|ZP_02929214.1| DNA-binding protein HU, putative [Verrucomicrobium spinosum DSM
           4136]
          Length = 109

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQK---G 60
           ++ +++ I+++  LSRK  +  + +L   I     +   GE + +         +K    
Sbjct: 14  KTQILEQITQDTELSRKQVSAVLDSLTEIISSHLKKNSVGEFV-LPGLLQIKTVRKPAVK 72

Query: 61  SRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94
           +R G N  T +           VV  +    LK  + 
Sbjct: 73  ARKGINPFTKEPTVFKAKPASTVVKVRPLKKLKDMVA 109


>gi|154495134|ref|ZP_02034139.1| hypothetical protein PARMER_04181 [Parabacteroides merdae ATCC
           43184]
 gi|154085684|gb|EDN84729.1| hypothetical protein PARMER_04181 [Parabacteroides merdae ATCC
           43184]
          Length = 128

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L + I+     S  +    V  L   I ++   G  + I    TF V  + +R   +   
Sbjct: 37  LAEQIAGSSTFSYGEVKGLVENLTILIAEALEGGNTVTIDGLGTFSVTARPNREVEDP-- 94

Query: 70  NQEVKIDPR----RVVVFKASSILKKRI 93
              +KI       + + FK S  LK+R+
Sbjct: 95  ---LKIRAESIKLKGIGFKPSPKLKERL 119


>gi|157093381|gb|ABV22345.1| histone-like protein [Noctiluca scintillans]
          Length = 101

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK-- 59
           + T+T S++ +S+++  GL  K+    V  +         +  + K++      +K+K  
Sbjct: 3   ATTLTASNVYQSVAETVGLKPKEVKGAVEAVMGVASGELKKHGSFKLAGVLALKLKKKPA 62

Query: 60  -GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94
             +R G N  T +          + V   A   LK  + 
Sbjct: 63  TPARKGVNPFTKEPCVFKAKPASKTVRVLAMKKLKDAVN 101


>gi|256821889|ref|YP_003145852.1| histone family protein DNA-binding protein [Kangiella koreensis DSM
           16069]
 gi|256795428|gb|ACV26084.1| histone family protein DNA-binding protein [Kangiella koreensis DSM
           16069]
          Length = 113

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQK--- 59
           T++ ++  I+ + GL++KD +  +  L   I     +   GE   +         +K   
Sbjct: 17  TKTQILNEIAAQTGLTKKDVSAVLDELGVVIERHVKKRAVGE-FTLPGLLKISTVKKPAV 75

Query: 60  GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94
            +R G N  T +E           V  +    LK  + 
Sbjct: 76  KARKGINPFTGEETMFKAKPASIAVKVRPLKKLKDMVQ 113


>gi|87311600|ref|ZP_01093718.1| probable DNA-binding protein HU [Blastopirellula marina DSM 3645]
 gi|87285722|gb|EAQ77638.1| probable DNA-binding protein HU [Blastopirellula marina DSM 3645]
          Length = 113

 Score = 54.1 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 48/101 (47%), Gaps = 10/101 (9%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR--GEAIKISSFATFHVKQKG 60
           K +T+++L+ +I++E G+++KD +  + +L N++  S  +    AI +        K+  
Sbjct: 13  KPLTKTELLNNIAEETGIAKKDVSIVLDSLQNQVKKSLGKTGAGAISLPGLIKIEKKKVP 72

Query: 61  SRVGR----NL-QTNQEVKIDPR---RVVVFKASSILKKRI 93
           +R  +    N  +  + + +  +     V  +A   LK  +
Sbjct: 73  ARPAKKGVPNPFKPGELMDVPAKPASVKVKIRALKNLKDMV 113


>gi|317063682|ref|ZP_07928167.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689358|gb|EFS26193.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 91

 Score = 54.1 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 5  ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + +  + K   K     LS  D+   +T +   I ++      ++      F +  +  R
Sbjct: 4  MNKRKMAKLYVKMSPEKLSITDAIEEITEVLETIKEAIALDGEVRFLKRGAFEILTRQPR 63

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
          V  N  T + + + P++ V F+AS  +K
Sbjct: 64 VVSNPVTRERMTVYPKKTVRFRASKNMK 91


>gi|330884569|gb|EGH18718.1| single-stranded binding protein [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 53

 Score = 54.1 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 22/53 (41%)

Query: 27 RFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
          + +  L + + D    G  I +       V ++ +R  R+  T   ++I  ++
Sbjct: 1  KALEQLGHIVADQLESGAEITLPGIGKLKVAERPARTVRHPSTGAAIEIAAKK 53


>gi|253583722|ref|ZP_04860920.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251834294|gb|EES62857.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 103

 Score = 54.1 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 39/92 (42%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T  + +    +   L S +++   + + +  + D     E + I  +  F  K+   R 
Sbjct: 1  MTEKEFLILYKERRNLKSIREAKERLDSFWKALFDVLEEEEKVIIKDWGIFEKKEVKPRK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            NL T + +  + ++V+ FK    +  ++ +
Sbjct: 61 ILNLATREMMITEEKKVIKFKPRMKMIDKVNE 92


>gi|94501846|ref|ZP_01308357.1| DNA-binding protein HU, putative [Oceanobacter sp. RED65]
 gi|94425979|gb|EAT10976.1| DNA-binding protein HU, putative [Oceanobacter sp. RED65]
          Length = 139

 Score = 53.8 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 10/95 (10%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQ---K 59
            ++ ++  I++   L++K     +  L + I     +   GE + +         +   K
Sbjct: 43  NKTQILTEIAENTELTKKQVQAVLDNLGDVIERHVKKRAVGEFV-LPGLLKIQAVKKPAK 101

Query: 60  GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91
            +R G N  T +E           V  +    LK+
Sbjct: 102 KARKGINPFTGEETVFKAKPASIAVKIRPLKKLKE 136


>gi|257469438|ref|ZP_05633530.1| hypothetical protein FulcA4_08878 [Fusobacterium ulcerans ATCC
          49185]
          Length = 88

 Score = 53.8 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 5  ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          + +  + K   K     LS  D+   +T +   I ++      ++      F +  +  R
Sbjct: 1  MNKRKMAKLYVKMSPEKLSITDAIEEITEVLETIKEAIALDGEVRFLKRGAFEILTRQPR 60

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90
          V  N  T + + + P++ V F+AS  +K
Sbjct: 61 VVSNPVTRERMTVYPKKTVRFRASKNMK 88


>gi|146340621|ref|YP_001205669.1| DNA-binding protein HU [Bradyrhizobium sp. ORS278]
 gi|146193427|emb|CAL77443.1| DNA-binding protein HU [Bradyrhizobium sp. ORS278]
          Length = 100

 Score = 53.8 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 6/100 (6%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS---FATFHVK 57
           M+  +++S L++ I+    LS++D    + TL +       +     +     F      
Sbjct: 1   MATQLSKSQLIEKIATTTELSKRDVKNVMETLTDVGHKELKKNGVFLVPGFAKFVVVKKA 60

Query: 58  QKGSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94
              +R G N  T +E+       R++V  +     K  + 
Sbjct: 61  AVKARKGTNPFTGEEMMFKAKPARKIVRARPVKAAKDAVA 100


>gi|330962997|gb|EGH63257.1| single-stranded binding protein [Pseudomonas syringae pv.
          maculicola str. ES4326]
          Length = 63

 Score = 53.8 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%)

Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88
          +  L   + D    G  I +       V ++ +R GRN  T   ++I  ++ + F  + +
Sbjct: 1  LEQLGQIVADQLESGAEITLPGIGKLKVAERPARTGRNPSTGAAIEIAAKKAIKFVPAKV 60

Query: 89 LKK 91
          L  
Sbjct: 61 LND 63


>gi|292492068|ref|YP_003527507.1| histone family protein DNA-binding protein [Nitrosococcus
           halophilus Nc4]
 gi|291580663|gb|ADE15120.1| histone family protein DNA-binding protein [Nitrosococcus
           halophilus Nc4]
          Length = 147

 Score = 53.8 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 10/100 (10%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR--GEAIKISSFATFHVKQKGSR 62
           +T++ L  +I++   LS+KD       L   I     +       +         +K +R
Sbjct: 48  MTKTQLYATIAENTNLSKKDVVAVFDELNTLINRHIKKRSAGVFTLPGLLKITTVKKPAR 107

Query: 63  VGR----NL-QTNQEVKI---DPRRVVVFKASSILKKRIM 94
             +    N  +  + + +     R VV  +    LK  + 
Sbjct: 108 KAQKNVPNPFKPGETMDVAAKPARTVVKVRPLKKLKDMVA 147


>gi|289548471|ref|YP_003473459.1| histone family protein DNA-binding protein [Thermocrinis albus DSM
           14484]
 gi|289182088|gb|ADC89332.1| histone family protein DNA-binding protein [Thermocrinis albus DSM
           14484]
          Length = 95

 Score = 53.8 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 7/100 (7%)

Query: 5   ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +TR  +V+  +    G S     + +  +  EI  +  +   ++I    TF + +   R 
Sbjct: 1   MTRRRVVEKFLQNNPGFSPTLVGKALNLMLEEIICALEKEGVVRIQGLGTFRLDRTAVRK 60

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
            R     +      R+ V FK S +L   +    +  K  
Sbjct: 61  LR----GKVY--PSRKTVRFKPSKLLLSALKMGTKSNKIK 94


>gi|119504254|ref|ZP_01626334.1| DNA-binding protein HU, putative [marine gamma proteobacterium
           HTCC2080]
 gi|119459762|gb|EAW40857.1| DNA-binding protein HU, putative [marine gamma proteobacterium
           HTCC2080]
          Length = 141

 Score = 53.8 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 20/104 (19%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF------- 54
           S  +T++ +V +I+   GL++K  +  +  +     D+ V G +IK      F       
Sbjct: 40  STKMTKTQIVGTIADNTGLTKKQVSDVMQQM-----DALVEG-SIKKRGAGEFTIPGMMK 93

Query: 55  --HVKQ--KGSRVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91
              V++    +R G N  T +E           V  +    +K+
Sbjct: 94  ITTVRKPAVKARKGINPFTGEETMFKAKPASTAVKIRPLKKMKE 137


>gi|253582644|ref|ZP_04859865.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251835514|gb|EES64054.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 77

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79
          ++ K++ + +      + ++ +    IK     TF V +K  R   N  T + ++I PR+
Sbjct: 6  INIKEALKEIDIFTKTVEEALLIKGYIKFIRRGTFMVLKKKPRTVSNPSTKELMRIYPRK 65

Query: 80 VVVFKASSIL 89
           V FK S  L
Sbjct: 66 TVKFKISKKL 75


>gi|253581507|ref|ZP_04858732.1| methionine import ATP-binding protein metN [Fusobacterium varium
          ATCC 27725]
 gi|251836577|gb|EES65112.1| methionine import ATP-binding protein metN [Fusobacterium varium
          ATCC 27725]
          Length = 103

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 39/92 (42%), Gaps = 1/92 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T  + +    +   L S +++   + + +  + D     + + I  +  F  K+   R 
Sbjct: 1  MTEKEFLTLYKERRNLKSIREAKERLDSFWKALFDVLEEEDKVIIKDWGIFEKKEVKPRK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            NL T + +  + ++V+ FK    +  ++ +
Sbjct: 61 ILNLATRKMMMTEEKKVIKFKPRMKMIDKVNE 92


>gi|260220519|emb|CBA28137.1| hypothetical protein Csp_A05780 [Curvibacter putative symbiont of
          Hydra magnipapillata]
          Length = 65

 Score = 53.0 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 28/55 (50%)

Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          + D+  +G  I++  F     K + + V RN +T ++++    +VV FK    L+
Sbjct: 1  MTDALKKGRRIEVRKFGILQTKVRSAVVYRNSRTGEKLQKRQSKVVHFKEGKNLR 55


>gi|241762720|ref|ZP_04760784.1| hypothetical protein AcdelDRAFT_0015 [Acidovorax delafieldii 2AN]
 gi|241368139|gb|EER62331.1| hypothetical protein AcdelDRAFT_0015 [Acidovorax delafieldii 2AN]
          Length = 64

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAI 46
            + RSDL+ ++  + GL +      + TL + I ++   G+ +
Sbjct: 21 NKMNRSDLIDTLHAKNGLVKMQCDAVLNTLIDTIQNAVKNGDTV 64


>gi|256845789|ref|ZP_05551247.1| predicted protein [Fusobacterium sp. 3_1_36A2]
 gi|256719348|gb|EEU32903.1| predicted protein [Fusobacterium sp. 3_1_36A2]
          Length = 111

 Score = 52.2 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 6/109 (5%)

Query: 5   ITRSD----LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE--AIKISSFATFHVKQ 58
           + +++     +K  +K    S + +          I ++    E   I +    +F V +
Sbjct: 2   MIKNEGYNIFLKEYAKISNFSIEKAEELTKNFIEAIRNTLSNYEIQNILLKRLGSFIVHE 61

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
           +  R G      + V    ++ + FK S   K++I ++++ RK     V
Sbjct: 62  QKERNGTLFGKKEVVTFPAKKAIKFKFSRNAKEKIEENIKERKRKNGGV 110


>gi|162448296|ref|YP_001610663.1| hypothetical protein sce0027 [Sorangium cellulosum 'So ce 56']
 gi|161158878|emb|CAN90183.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 102

 Score = 52.2 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 8/98 (8%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RG-EAIKISSFATFHVKQK 59
           S  +T++ ++  +++   L +K     +  L   +       G   + +        K+ 
Sbjct: 4   SNKLTKAQMIVGLAEATHLDKKSVASVLDALGELVKKELGPEGPGEVTVPGLVKIKAKEI 63

Query: 60  GS---RVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91
            +   R G N  T Q + I      R +       LK 
Sbjct: 64  PATQDREGINPFTKQPMTIKGKPASRKLRAAPVKALKD 101


>gi|329954720|ref|ZP_08295780.1| putative DNA-binding protein [Bacteroides clarus YIT 12056]
 gi|328527261|gb|EGF54265.1| putative DNA-binding protein [Bacteroides clarus YIT 12056]
          Length = 164

 Score = 52.2 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 16/116 (13%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           M +T+T   +   + ++  LS  D    +T     +  +   G ++ I  F  F +    
Sbjct: 30  MGQTMTLESIAYEMKEKSSLSYGDIKSVLTNFVEAMRTALYNGHSVNIQEFGVFSLSAHS 89

Query: 61  SRVG-------RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
           + V        +N++T   VKI       F+ASS +K  +     G K    DV +
Sbjct: 90  AGVADVKDCTSKNIRT---VKI------NFRASSSVKPNLTSTRAGEKIEFLDVQA 136


>gi|198274638|ref|ZP_03207170.1| hypothetical protein BACPLE_00790 [Bacteroides plebeius DSM
          17135]
 gi|198272085|gb|EDY96354.1| hypothetical protein BACPLE_00790 [Bacteroides plebeius DSM
          17135]
          Length = 381

 Score = 52.2 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV--KQ 58
          M+  IT  +LV   +++  LS+ D+  F     + I ++  R + +K+    TF +    
Sbjct: 1  MNDKITLHELVDLFARKSQLSQADAALFAKEFLSLIEEALARDKYVKVKGLGTFKLITVD 60

Query: 59 KGSRVGRN-LQTNQEVKIDPRRVVVFKASSILKKRIMD 95
                 N  +T           V F   + LK  +  
Sbjct: 61 ATEETASNGPETTDS---QSHTRVSFIPETGLKDLVNK 95


>gi|303271375|ref|XP_003055049.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463023|gb|EEH60301.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 132

 Score = 52.2 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 17  EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKID 76
           +  +++  +   +  L   I  S   G+ +    F +F    K SR+ +  +   ++++ 
Sbjct: 54  KAAITKAQAEAALEALIGGIKSSVASGQRVTFQGFGSFTPVTKASRMVQTPK-GVKMQLP 112

Query: 77  PRRVVVFKASSILKKRIMD 95
            R+ + FK SS  K  +  
Sbjct: 113 ERKGLRFKISSEFKSAVQG 131


>gi|39938811|ref|NP_950577.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
 gi|39938851|ref|NP_950617.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
 gi|39721920|dbj|BAD04410.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
          OY-M]
 gi|39721960|dbj|BAD04450.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
          OY-M]
          Length = 96

 Score = 51.8 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKI-SSFATFHVKQKGSRV 63
          +T+ +L+K I+     S   +  F       + ++    E + +      F +K + S +
Sbjct: 1  MTKKELIKKIALSNKTSVTKTEEFYHIFEKTLIEAITNNEEVVLFPKIGKFKLKSRKSYI 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92
          GRN +T +++KI  + VV FK S  +K +
Sbjct: 61 GRNPKTKKKLKIPKKTVVTFKLSKSIKDK 89


>gi|325297734|ref|YP_004257651.1| histone family protein DNA-binding protein [Bacteroides
          salanitronis DSM 18170]
 gi|324317287|gb|ADY35178.1| histone family protein DNA-binding protein [Bacteroides
          salanitronis DSM 18170]
          Length = 317

 Score = 51.4 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 43/97 (44%), Gaps = 4/97 (4%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+  IT  +L++ +++   +   D+ +F  T F  I ++    + +K+    TF +    
Sbjct: 1  MNDQITLQELIELLAQHHQIEHTDAEKFGRTFFALIGEALATDKYVKVKGLGTFKLID-- 58

Query: 61 SRVGRNLQTN--QEVKIDPRRVVVFKASSILKKRIMD 95
          + V  N+ T+  + + +     + F   + ++  +  
Sbjct: 59 ADVCENMGTDAEERIGMQNHLRISFTPDATIRDAVNK 95


>gi|298243053|ref|ZP_06966860.1| histone family protein DNA-binding protein [Ktedonobacter
          racemifer DSM 44963]
 gi|297556107|gb|EFH89971.1| histone family protein DNA-binding protein [Ktedonobacter
          racemifer DSM 44963]
          Length = 87

 Score = 51.4 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 16/91 (17%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          MS+ I + D+ + ++         +T +V  +   + ++   GE++ +  F  F V+   
Sbjct: 1  MSERIKKEDVARRLATRMDTDEATATAWVDGVIETLYEAFKAGESVTLPGFGGFFVR--- 57

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
                 +           V  F     L+ 
Sbjct: 58 ------PE-------PKSWVFKFNPGQRLRA 75


>gi|269941613|emb|CBI50019.1| phage DNA-binding protein [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 109

 Score = 51.4 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 46/108 (42%), Gaps = 12/108 (11%)

Query: 1   MSKTITRSDLVKSISKEF-----GLSRKDSTRFVTTLFNEICDSAVRGEAIKI----SSF 51
           M+K + + DL+  + ++       +++KD+    +   + + ++    + +      ++F
Sbjct: 1   MTK-LAKKDLINELQEKSRVRGLEITKKDAATLFSAFEDTMIEAIHAADEVGYDSFSTNF 59

Query: 52  ATFHVKQKGSRVGRNLQTNQEV--KIDPRRVVVFKASSILKKRIMDDM 97
            TF + +   + G +    +E        + V FK +  +K ++  + 
Sbjct: 60  GTFKIVEVPEKSGVSRLGGEEKSWTSPAHKTVRFKLNKSVKDKLKAET 107


>gi|257469717|ref|ZP_05633809.1| hypothetical protein FulcA4_10275 [Fusobacterium ulcerans ATCC
          49185]
 gi|317063949|ref|ZP_07928434.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689625|gb|EFS26460.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 99

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +  +D +K   K  G   +K     +   +  +  +    + +K   +  F  ++   R 
Sbjct: 1  MKEADFIKLYKKRSGDKDKKIVKEKIDRFWEMLFKALEEEKKVKFKDWGVFETREMKGRK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
               + + +  +P++ + F+A   L   I ++
Sbjct: 61 IIVPVSTEAIYTEPKKTIKFRAGKGLLDLINNE 93


>gi|253584114|ref|ZP_04861312.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251834686|gb|EES63249.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 97

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 5  ITRSDLVKSISKEFGLSR--KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T  + +    K+  LSR  K+    +   ++ I  +      + +  +  F  K+   R
Sbjct: 1  MTEKEFI-KFYKKRNLSRSYKEVKEKIDLFWDTILKALDEDGKVSLKDWGVFEKKEVAPR 59

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
               +  +E        + F+  + LK  +  D
Sbjct: 60 KIMTPRMEKERVTKAGEKISFRTGTGLKTLVNRD 93


>gi|257470534|ref|ZP_05634624.1| DNA-binding protein HU-beta [Fusobacterium ulcerans ATCC 49185]
 gi|317064741|ref|ZP_07929226.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690417|gb|EFS27252.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 95

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 1/88 (1%)

Query: 5  ITRSDLVKSISKEFGLSR-KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +   D +K      GL   +++   + T +  +       E +    +  F  K+  SR 
Sbjct: 1  MKEKDFIKLYKNNRGLKNLEEAKEKIETFWTTLFTVLEEEEKVTFKGWGIFRKKEMNSRK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91
              +  + +   P+ V+ F+A   LK+
Sbjct: 61 VILPKNKKTIYTTPKTVIKFRAGKELKE 88


>gi|88705600|ref|ZP_01103310.1| histone-like protein [Congregibacter litoralis KT71]
 gi|88700113|gb|EAQ97222.1| histone-like protein [Congregibacter litoralis KT71]
          Length = 140

 Score = 51.1 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 10/98 (10%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQK 59
           + +T++ ++ SI++  GL++K     +T L   I  S  +   GE   +         +K
Sbjct: 40  EKMTKTQVMASIAESTGLTKKQVGDVMTELETLIERSIKKRAVGE-FTLPGLMKITTVKK 98

Query: 60  ---GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91
               +R G N  T +E           V  +    +K+
Sbjct: 99  PAVKARKGINPFTGEETMFKAKPASVAVKVRPLKKMKE 136


>gi|260171450|ref|ZP_05757862.1| putative non-specific DNA-binding protein HU-1 [Bacteroides sp. D2]
 gi|315919765|ref|ZP_07916005.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693640|gb|EFS30475.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 137

 Score = 50.7 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 12/93 (12%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK-----QKG 60
           T++  V+ ++ +  +++ D+ R ++ +   I      G  + +  F +F +       K 
Sbjct: 34  TKA-FVEYLADKNNITKGDAYRNLSMILEGIEAILKDGNILNLDDFGSFSLNGSFCEDKE 92

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
              G N +  + +++   + VVFKA   LKK I
Sbjct: 93  --PGENHR-AESIEV---KNVVFKAEKRLKKAI 119


>gi|58584319|ref|YP_197892.1| nucleoid DNA-binding protein [Wolbachia endosymbiont strain TRS
          of Brugia malayi]
 gi|58418635|gb|AAW70650.1| Bacterial nucleoid DNA-binding protein, HupA family [Wolbachia
          endosymbiont strain TRS of Brugia malayi]
          Length = 92

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 6  TRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          T+S+++  ++K   L  R      V   F  +  +      ++I  F +F ++   
Sbjct: 3  TKSNIIMKVAKRHPLLDRIVIAAIVNRFFEILSSTLEHHNRVEIRGFGSFSIRSYN 58


>gi|254516714|ref|ZP_05128773.1| bacterial DNA-binding protein [gamma proteobacterium NOR5-3]
 gi|219675137|gb|EED31504.1| bacterial DNA-binding protein [gamma proteobacterium NOR5-3]
          Length = 139

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQK 59
           + +T++ ++ SI++  GLS+K     +  L   I  S  +   GE   +         +K
Sbjct: 39  EKMTKTQVLASIAESTGLSKKQVGDVMAELETLIERSVKKRAVGE-FTLPGLMKITTVKK 97

Query: 60  ---GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91
               +R G N  T +E           V  +    +K+
Sbjct: 98  PAVKARKGINPFTGEETMFKAKPASVAVKVRPLKKMKE 135


>gi|29349840|ref|NP_813343.1| putative non-specific DNA-binding protein HU-1 [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253569797|ref|ZP_04847206.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298384106|ref|ZP_06993667.1| non-specific DNA-binding protein HU-1 [Bacteroides sp. 1_1_14]
 gi|29341751|gb|AAO79537.1| putative non-specific DNA-binding protein HU-1 [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251840178|gb|EES68260.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298263710|gb|EFI06573.1| non-specific DNA-binding protein HU-1 [Bacteroides sp. 1_1_14]
          Length = 137

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 42/100 (42%), Gaps = 26/100 (26%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV--------- 56
           T++  V+ ++ ++ LS+ ++ + ++ +   +      G  + +  F +F +         
Sbjct: 34  TKA-FVEYLATKYNLSKGEAYKSLSIVLEGMEAVLKDGNILNLDDFGSFSLNGNFCEDKE 92

Query: 57  ---KQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
                +           + +++   + VVFKA   LKKRI
Sbjct: 93  PDENHRA----------ESIQV---KNVVFKADKNLKKRI 119


>gi|294666675|ref|ZP_06731912.1| Bacterial DNA-binding protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603581|gb|EFF46995.1| Bacterial DNA-binding protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 257

 Score = 50.3 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 8/98 (8%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISS---FATFHVK 57
           + ++++ LV  I++   L+ KD    + +L      S   +G  +  I       T HV 
Sbjct: 158 EALSKTGLVAHIAESTQLAPKDVRAVLASLEATAHASLSKKGAGSFTIPGMLKLTTVHVP 217

Query: 58  QKGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92
            K  R G N  T +E           +  +    LK  
Sbjct: 218 AKPKRKGINPFTKEEQMFAAKPATTKLKSRPLKKLKDA 255


>gi|88607135|ref|YP_504885.1| integration host factor, beta subunit [Anaplasma phagocytophilum
           HZ]
 gi|88598198|gb|ABD43668.1| integration host factor, beta subunit [Anaplasma phagocytophilum
           HZ]
          Length = 97

 Score = 50.3 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 20/107 (18%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ---KG 60
           + RSDL++ I+++   L     ++ +   F  I         +++  F +F  +    K 
Sbjct: 1   MLRSDLIRRIARKNPTLGESVVSQILNVFFQSILQHMHDDSRVELRGFGSFASRSYVLKS 60

Query: 61  SRVGRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKCN 103
           +             +   +V    + F+ S  L K +      +  +
Sbjct: 61  A------------NVALGKVQYKRMYFRPSEKLIKAVNQPAHPKSGS 95


>gi|218258130|ref|ZP_03474532.1| hypothetical protein PRABACTJOHN_00186 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225723|gb|EEC98373.1| hypothetical protein PRABACTJOHN_00186 [Parabacteroides johnsonii
           DSM 18315]
          Length = 146

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 16/94 (17%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           +L   IS +   S  D    +  L N +  +  +GE +K+    +F ++      G    
Sbjct: 38  ELCDLISAQSTASSGDVKLILDELVNVMRRNLGKGEVVKVGELGSFQLQ-----FG---S 89

Query: 69  TNQ-------EVKIDPRRVVVFKASSILKKRIMD 95
           T         +V I  RR+V F+   +LK+ + +
Sbjct: 90  TGTVTEKEFNQVLIKSRRIV-FRPGKLLKEAVKN 122


>gi|78048627|ref|YP_364802.1| DNA-binding protein [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78037057|emb|CAJ24798.1| Bacterial DNA-binding protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 256

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 8/98 (8%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISS---FATFHVK 57
           + ++++ LV  I++   L+ KD    + +L      S   +G  +  I       T HV 
Sbjct: 157 EALSKTGLVAHIAESTQLAPKDVRAVLASLEATAHASLSKKGVGSFTIPGMLKLTTVHVP 216

Query: 58  QKGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92
            K  R G N  T +E           +  +    LK  
Sbjct: 217 AKPKRKGINPFTKEEQMFAAKPATTKLKSRPLKKLKDA 254


>gi|297519827|ref|ZP_06938213.1| transcriptional regulator HU subunit beta [Escherichia coli OP50]
          Length = 29

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+ I   +V  F+A   LK  + 
Sbjct: 1  NPQTGKEITIAAAKVPSFRAGKALKDAVN 29


>gi|57867550|ref|YP_189186.1| DNA-binding protein HU [Staphylococcus epidermidis RP62A]
 gi|57638208|gb|AAW54996.1| DNA-binding protein HU, putative [Staphylococcus epidermidis RP62A
           phage SP-beta]
          Length = 109

 Score = 49.5 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 45/108 (41%), Gaps = 12/108 (11%)

Query: 1   MSKTITRSDLVKSISKEF-----GLSRKDSTRFVTTLFNEICDSAVRGEAIKI----SSF 51
           M+K + + DL+  + +        +++KD+    +   + + ++    + +      ++F
Sbjct: 1   MTK-LAKKDLINELQESARVRGLEITKKDAATLFSAFEDTVIEAIHAADEVGYDSFSTNF 59

Query: 52  ATFHVKQKGSRVGRNLQTNQEV--KIDPRRVVVFKASSILKKRIMDDM 97
            TF + +   + G +    +E        + V FK +  +K ++  + 
Sbjct: 60  GTFKIVEVSEKSGVSRLGGEEKFWTSPAHKTVRFKLNKSVKDKLKAET 107


>gi|229164819|ref|ZP_04292643.1| DNA-binding protein HU [Bacillus cereus R309803]
 gi|228618643|gb|EEK75645.1| DNA-binding protein HU [Bacillus cereus R309803]
          Length = 52

 Score = 49.5 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 26/45 (57%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS 49
          + + ++VK+++++  LS K+       + +EI  +   GE +++S
Sbjct: 4  MNKIEIVKNVAEKVELSHKNVAVSTQVVLDEITKALANGEKVRLS 48


>gi|294507599|ref|YP_003571657.1| hypothetical protein containing IHF-like DNA-binding domain
          [Salinibacter ruber M8]
 gi|294343927|emb|CBH24705.1| hypothetical protein containing IHF-like DNA-binding domain
          [Salinibacter ruber M8]
          Length = 83

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 25 STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84
          +   +    + + D    G A+++    TF V+ + S  G   +        PR  VVF 
Sbjct: 21 AEDVIEAFTDVVQDQLDTGNAVEVPGLGTFSVEHRPS--GVQEEDGVRRLAPPRNEVVFT 78

Query: 85 A 85
           
Sbjct: 79 P 79


>gi|48696473|ref|YP_024515.1| putative integration host factor [Staphylococcus phage K]
 gi|66395088|ref|YP_240952.1| ORF147 [Staphylococcus phage G1]
 gi|37729167|gb|AAO47534.1| ORF85 [Staphylococcus phage K]
 gi|62637110|gb|AAX92221.1| ORF147 [Staphylococcus phage G1]
 gi|119658122|gb|ABL87157.1| putative integration host factor [Staphylococcus phage 812]
 gi|182627946|gb|ACB89108.1| gp ORF115 [Staphylococcus phage A5W]
          Length = 101

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 9/105 (8%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQK 59
           MS    R D+ + IS+  G   +D    ++   + I D    G   +K   F    V ++
Sbjct: 1   MSTA-NRRDIARKISENTGYYIQDVEEILSAETDAISDLLEEGYTKVKNHKFMQIEVIER 59

Query: 60  ---GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
               +  G N    +   +  R+ + FK    L + ++D +   +
Sbjct: 60  KGKKAWDGLN---KEYFHLPNRKAIKFKPLKEL-EEVIDRLNEEE 100


>gi|255264224|ref|ZP_05343566.1| DNA-binding protein HU, putative [Thalassiobium sp. R2A62]
 gi|255106559|gb|EET49233.1| DNA-binding protein HU, putative [Thalassiobium sp. R2A62]
          Length = 153

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 24/59 (40%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           + + DL+  + +  G+ +KD    V      I ++   GE + I       V ++  R 
Sbjct: 67  MKKKDLMDRVVERSGMKKKDVKPAVEAALAVIGEALAAGEEMNIQPLGKIMVNREKDRP 125


>gi|315919280|ref|ZP_07915520.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693155|gb|EFS29990.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 212

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 1/93 (1%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+    LV  I     LS  D T  +  L  E+      G+ + I       V      
Sbjct: 30  ETVNTKKLVYRIHDRCSLSPSDVTATLEELKYEVAQCLKEGKKVHIDGLGYLQVTLSCEE 89

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R+ +  +  K+   + + FKA   LK  + D
Sbjct: 90  EIRDPKDKRVHKVKL-KAIKFKADKELKAELSD 121


>gi|294626279|ref|ZP_06704882.1| bacterial DNA-binding protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599425|gb|EFF43559.1| bacterial DNA-binding protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 266

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 8/98 (8%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISS---FATFHVK 57
           + ++++ LV  I++   L+ KD    + +L      S   +G  +  I       T HV 
Sbjct: 167 EALSKTGLVAHIAESTQLAPKDVRAVLASLEATAHASLSKKGVGSFTIPGMLKLTTVHVP 226

Query: 58  QKGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92
            K  R G N  T +E           +  +    LK  
Sbjct: 227 AKPKRKGINPFTKKEQMFAAKPATTKLKSRPLKKLKDA 264


>gi|253582551|ref|ZP_04859772.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251835421|gb|EES63961.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 112

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 40/94 (42%), Gaps = 1/94 (1%)

Query: 3   KTITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + +  ++ +K   +   + S+K++   + + +N +  +    + +    +  F  K   S
Sbjct: 13  EKMKEAEFIKFYKERNEIKSKKEAKEKIDSFWNALFKAVSEEKRVMFKDWGVFEEKDVKS 72

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R     +  QE    P++V+ F+A   L + +  
Sbjct: 73  RKIVIPRQLQEAYTQPKKVLKFRAGGKLIQSVNK 106


>gi|330886055|gb|EGH19956.1| hypothetical protein PSYMO_00050 [Pseudomonas syringae pv. mori
          str. 301020]
          Length = 38

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          R GRN  T   ++I  ++VV F ++ +L   I   
Sbjct: 1  RTGRNPSTGAAIEIAAKKVVKFVSAKVLNDAINKG 35


>gi|168704952|ref|ZP_02737229.1| hypothetical protein GobsU_35800 [Gemmata obscuriglobus UQM 2246]
          Length = 128

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 9/95 (9%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RG-EAIKISSFATFHVKQKGSR 62
           +T+S LV  +S++  LS+K     +  + + +       G         A   + Q   R
Sbjct: 30  LTKSQLVAQLSEKTELSKKQVEGVLDAIVDAVKAQLGPNGPGKFVFPGLARMSLSQVAER 89

Query: 63  VG----RNLQTNQEVKI---DPRRVVVFKASSILK 90
            G     N    Q            V  +    +K
Sbjct: 90  KGGETKINPLNKQPYVTQPRPAYNKVNIRPVKSIK 124


>gi|83943258|ref|ZP_00955718.1| DNA-binding protein HU, putative [Sulfitobacter sp. EE-36]
 gi|83846266|gb|EAP84143.1| DNA-binding protein HU, putative [Sulfitobacter sp. EE-36]
          Length = 121

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           +   + + +L+ ++ +  G+ ++D+   V  +   + ++      + +  F    V  + 
Sbjct: 32  LGPVMRKKELIDTVVERSGVKKRDAKPVVDAMLAVLGEALSDSRELNLLPFGKLKVINEK 91

Query: 61  SRVGRNLQTNQEVKIDPRRV 80
                 L+  + +++  R+V
Sbjct: 92  E-----LKNGKMIRVKVRQV 106


>gi|320012167|gb|ADW07017.1| histone family protein DNA-binding protein [Streptomyces
          flavogriseus ATCC 33331]
          Length = 87

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 30/103 (29%)

Query: 5  ITRSDLVKSISKEF----GLSRKDSTRFVTTLFNEICDS------AVRGEAIKISSFATF 54
          + RS L++++ +       LS     R V  LF  + ++         G A+ +  F +F
Sbjct: 1  MDRSALIEAVGRRTAGGGELSADQIGRVVDALFGTVAEAGAIAETLRTGGAVTLVGFGSF 60

Query: 55 HVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
          H +             +            +    L + + D++
Sbjct: 61 HQED-----------GEA---------ALRPGKALNEFVNDEV 83


>gi|83954391|ref|ZP_00963111.1| DNA-binding protein HU, putative [Sulfitobacter sp. NAS-14.1]
 gi|83841428|gb|EAP80598.1| DNA-binding protein HU, putative [Sulfitobacter sp. NAS-14.1]
          Length = 121

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           +   + + +L+ ++ +  G+ ++D+   V  +   + ++      + +  F    V  + 
Sbjct: 32  LGPVMRKKELIDTVVERSGVKKRDAKPVVDAMLAVLGEALSDSRELNLLPFGKLKVINEK 91

Query: 61  SRVGRNLQTNQEVKIDPRRV 80
                 L+  + +++  R+V
Sbjct: 92  E-----LKNGKMIRVKVRQV 106


>gi|330884448|gb|EGH18597.1| hypothetical protein Pgy4_37141 [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 47

 Score = 48.4 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%)

Query: 55 HVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           V ++ +R  R+  T   ++I  ++VV F ++ +L   I   
Sbjct: 3  KVAERPARTVRHPSTGAAIEIAAKKVVKFVSAKVLNDAINKG 44


>gi|301161841|emb|CBW21385.1| putative non-specific DNA binding protein [Bacteroides fragilis
          638R]
          Length = 159

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           KT++   L + I+++  L+  D    V  L   +    +  + +++    TF +K +  
Sbjct: 29 GKTVSTQQLAEMIAEKSSLTPGDVHNVVRNLMTAMRSELLNSKTVRLEGLGTFTMKARS- 87

Query: 62 RVGR 65
            GR
Sbjct: 88 -RGR 90


>gi|260170959|ref|ZP_05757371.1| putative DNA-binding protein [Bacteroides sp. D2]
          Length = 233

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 1/93 (1%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+    LV  I     LS  D T  +  L  E+      G+ + I       V      
Sbjct: 51  ETVNTKKLVYRIHDRCSLSPSDVTATLEELKYEVAQCLKEGKKVHIDGLGYLQVTLSCEE 110

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
             R+ +  +  K+   + + FKA   LK  + D
Sbjct: 111 EIRDPKDKRVHKVKL-KAIKFKADKELKAELSD 142


>gi|66391376|ref|YP_238606.1| ORF129 [Staphylococcus phage Twort]
 gi|62637306|gb|AAX92417.1| ORF129 [Staphylococcus phage Twort]
          Length = 98

 Score = 48.0 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 8/100 (8%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV- 63
            R D+V+ IS + G   +D    +      I +    G + IK   F    V+ +  +  
Sbjct: 3   NRKDIVRRISDKTGYYMQDIEEILNAEAESIYELLKEGNDKIKYHKFYQIEVETREPKEA 62

Query: 64  --GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
             G N    +  +I  ++ + F+  S L ++++ ++   +
Sbjct: 63  WDGLN---KRYFQIPEKKYIKFRPMSEL-EKVIKEINEEE 98


>gi|53712121|ref|YP_098113.1| putative non-specific DNA binding protein [Bacteroides fragilis
          YCH46]
 gi|52214986|dbj|BAD47579.1| putative non-specific DNA binding protein [Bacteroides fragilis
          YCH46]
          Length = 159

 Score = 48.0 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           KT++   L + I+++  L+  D    V  L   +    +  + +++    TF +K +  
Sbjct: 29 GKTVSTQQLAEMIAEKSSLTPGDVHNVVRNLMTAMRSELLNSKTVRLEGLGTFTMKARS- 87

Query: 62 RVGR 65
            GR
Sbjct: 88 -RGR 90


>gi|189466861|ref|ZP_03015646.1| hypothetical protein BACINT_03242 [Bacteroides intestinalis DSM
           17393]
 gi|189435125|gb|EDV04110.1| hypothetical protein BACINT_03242 [Bacteroides intestinalis DSM
           17393]
          Length = 169

 Score = 48.0 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 16/88 (18%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------VKQKGSR 62
           L  +I K   +++ D    +  L  E+ ++ V G  +K++ F TFH       V      
Sbjct: 40  LAAAIQKSCAMTKGDVKHVIEALVEEVQENLVNGNKVKLNLFGTFHMTFCCPGVATSAEC 99

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILK 90
             +N++    V I       F     LK
Sbjct: 100 TVKNIK---RVNI------RFVPDKELK 118


>gi|60680309|ref|YP_210453.1| putative non-specific DNA binding protein [Bacteroides fragilis
          NCTC 9343]
 gi|60491743|emb|CAH06500.1| putative non-specific DNA binding protein [Bacteroides fragilis
          NCTC 9343]
          Length = 159

 Score = 48.0 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           KT++   L + I+++  L+  D    V  L   +    +  + +++    TF +K +  
Sbjct: 29 GKTVSTQQLAEMIAEKSSLTPGDVHNVVRNLMTAMRSELLNSKTVRLEGLGTFTMKARS- 87

Query: 62 RVGR 65
            GR
Sbjct: 88 -RGR 90


>gi|224026653|ref|ZP_03645019.1| hypothetical protein BACCOPRO_03410 [Bacteroides coprophilus DSM
          18228]
 gi|224019889|gb|EEF77887.1| hypothetical protein BACCOPRO_03410 [Bacteroides coprophilus DSM
          18228]
          Length = 44

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKI 48
          +T++++V  I+K+ G+ +   T  V      + DS + GE + +
Sbjct: 1  MTKAEIVDRIAKQTGIEKNTVTAVVEAFMKSVKDSMIVGEEVFL 44


>gi|254521039|ref|ZP_05133094.1| bacterial DNA-binding protein [Stenotrophomonas sp. SKA14]
 gi|219718630|gb|EED37155.1| bacterial DNA-binding protein [Stenotrophomonas sp. SKA14]
          Length = 132

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFA---TFHVK 57
           + +T+S LV  I++  G+  KD    + +L + +  S   +G  +  +       T +V 
Sbjct: 33  EVLTKSGLVAHIAEASGVVAKDVRAVLASLESAVASSVHKKGAGSFTLPGLLKITTVNVA 92

Query: 58  QKGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92
            K  R G N  T +E           +  +    LK  
Sbjct: 93  AKPKRKGINPFTKEEQWFAAKPATTKLKVRPLKKLKDA 130


>gi|282857713|ref|ZP_06266922.1| histone family protein DNA-binding protein [Pyramidobacter
          piscolens W5455]
 gi|282584383|gb|EFB89742.1| histone family protein DNA-binding protein [Pyramidobacter
          piscolens W5455]
          Length = 98

 Score = 47.6 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/90 (11%), Positives = 30/90 (33%), Gaps = 6/90 (6%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRF--VTTLFNEICDSAVRGEAIKISSFA--TFHVKQKG 60
          +   +L++   K     +  +     +      +  +    E + +      T  + + G
Sbjct: 1  MNTDELIRQYRKNSRYPKPRAQALADIENFLAVVAKALTDEERVNLRGVGILTTTLSEVG 60

Query: 61 SRVGRNLQTNQEVKIDPRRVV--VFKASSI 88
           +  +N +T +    +  + +   FK S  
Sbjct: 61 DKTYKNPRTGESFVKEGHKTLRAKFKPSKA 90


>gi|157093125|gb|ABV22217.1| major basic nuclear protein [Karlodinium micrum]
          Length = 110

 Score = 47.6 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           ++K +++  L K+++ E GL +K  +  + ++ +       +     I        + K 
Sbjct: 14  VAKAMSKGALAKALADEHGLKQKACSEVLNSIVDIATKEVKKNGIFTIHGVCRIKTRTKP 73

Query: 61  SRVG--RNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
           +     RN+   +EVK+     + VV    ++ LK +I
Sbjct: 74  ATKAGVRNIF-GKEVKVAAKPAKTVVKAYPAAALKSQI 110


>gi|153808071|ref|ZP_01960739.1| hypothetical protein BACCAC_02357 [Bacteroides caccae ATCC 43185]
 gi|149128974|gb|EDM20190.1| hypothetical protein BACCAC_02357 [Bacteroides caccae ATCC 43185]
          Length = 169

 Score = 47.2 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          + +  L  +I     L+  D    +     ++  S  +G+ +KI    TFH+
Sbjct: 37 VNK--LANAIEANSSLTAGDVKHAIEAFVEQLRLSLTQGDKVKIDGLGTFHI 86


>gi|194364785|ref|YP_002027395.1| histone family protein DNA-binding protein [Stenotrophomonas
           maltophilia R551-3]
 gi|194347589|gb|ACF50712.1| histone family protein DNA-binding protein [Stenotrophomonas
           maltophilia R551-3]
          Length = 132

 Score = 47.2 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFA---TFHVK 57
           + +T+S LV  I++  G+  KD    + +L + +  S   +G  +  +       T +V 
Sbjct: 33  EVLTKSGLVAHIAEASGVIAKDVRAVLASLESAVASSVHKKGAGSFTLPGLLKISTVNVP 92

Query: 58  QKGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92
            K  R G N  T +E           +  +    LK  
Sbjct: 93  AKPKRKGINPFTKEEQWFAAKPATTKLKVRPLKKLKDA 130


>gi|94313664|ref|YP_586873.1| histone-like DNA-binding protein [Cupriavidus metallidurans CH34]
 gi|93357516|gb|ABF11604.1| Histone-like DNA-binding protein [Cupriavidus metallidurans CH34]
          Length = 230

 Score = 47.2 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 8/97 (8%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATF---HVKQ 58
           T  +S LV  +  +  L  K     +  L N I  +   +G     +          V  
Sbjct: 132 TFNKSSLVAHLVAQTQLEAKAVKTVLAHLENTIVSALNKKGAGEFTLPGLLKVTAQQVPA 191

Query: 59  KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92
           K  R G++  T +E           V  +    LK  
Sbjct: 192 KKKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 228


>gi|255007647|ref|ZP_05279773.1| putative non-specific DNA binding protein [Bacteroides fragilis
          3_1_12]
 gi|313145341|ref|ZP_07807534.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134108|gb|EFR51468.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 159

 Score = 47.2 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           KT++   L + I+++  L+  D    V  L   +    +  + +++    TF +K +  
Sbjct: 29 GKTVSTQQLAEMIAEKSSLTPGDVHNVVRNLMTAMRSELLNSKTVRLEGLGTFTMKARS- 87

Query: 62 RVGR 65
            GR
Sbjct: 88 -RGR 90


>gi|84515538|ref|ZP_01002900.1| hypothetical protein SKA53_02731 [Loktanella vestfoldensis SKA53]
 gi|84510821|gb|EAQ07276.1| hypothetical protein SKA53_02731 [Loktanella vestfoldensis SKA53]
          Length = 135

 Score = 47.2 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 23/52 (44%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          + DL+  ++   GL ++D+   +      I ++  RG+ + +       V +
Sbjct: 48 KPDLLDQLATRSGLKKRDAKLALDATLALIGEALARGDDLLLPPLGRVRVVK 99


>gi|119357868|ref|YP_912512.1| sporulation domain-containing protein [Chlorobium
          phaeobacteroides DSM 266]
 gi|119355217|gb|ABL66088.1| Sporulation domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 350

 Score = 47.2 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS-RV 63
          +T  +L + ++    + R ++ R +  L   +    ++   +++S    F V  + + R 
Sbjct: 1  MTEHNLTEELAALLDIERAEAGRLLNGLSGAMSAELLQEGKLQLSGLGLFTVHHEPATRQ 60

Query: 64 GRNLQTNQE-VKIDPRRVVVFKA 85
                 +E +   PR  VVF  
Sbjct: 61 MH----GEEAIYCPPRNRVVFLP 79


>gi|268317075|ref|YP_003290794.1| hypothetical protein Rmar_1519 [Rhodothermus marinus DSM 4252]
 gi|262334609|gb|ACY48406.1| hypothetical protein Rmar_1519 [Rhodothermus marinus DSM 4252]
          Length = 68

 Score = 47.2 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 26 TRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKA 85
           +    L   + ++ +RGE++ +    TF+V  +GS   R     + V   PR +  F  
Sbjct: 7  EQVAQALAELVQEALMRGESVHVPGLGTFYVDHRGSTTERLPD-GRVVLHPPRDLPAFTP 65


>gi|296448475|ref|ZP_06890357.1| histone family protein DNA-binding protein [Methylosinus
           trichosporium OB3b]
 gi|296254027|gb|EFH01172.1| histone family protein DNA-binding protein [Methylosinus
           trichosporium OB3b]
          Length = 130

 Score = 47.2 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 9/99 (9%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RG-EAIKISSFATFHVKQKG 60
           +++T+S L+  ++++  L RK +     TL      S   RG     +       +++  
Sbjct: 29  ESLTKSALINHLAEQNELPRKTAAAVYATLEEVFLGSVHPRGVGEFTLPGLLKVSLRKVP 88

Query: 61  SRVG----RNLQTNQEVKI---DPRRVVVFKASSILKKR 92
           +R      RN  T + VK         V  +  S LK  
Sbjct: 89  ARKAGTLVRNPATGEMVKAAAKPASVRVKIRPLSKLKTA 127


>gi|15838537|ref|NP_299225.1| histone-like protein [Xylella fastidiosa 9a5c]
 gi|9107041|gb|AAF84745.1|AE004013_11 histone-like protein [Xylella fastidiosa 9a5c]
          Length = 130

 Score = 47.2 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFA---TFHVK 57
           +T+++S LV  +++   L+ KD    +  L N I  S   +G  +  +       T +V 
Sbjct: 31  ETLSKSALVAHLAESSALAAKDVRTLLGALENTIHASLHKKGVGSFTLPGLLKISTVNVP 90

Query: 58  QKGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92
            K  R G N  T +E           +  +    LK  
Sbjct: 91  AKPKRKGINPFTKEEQWFAAKPASVKIKTRPLKKLKDA 128


>gi|190573189|ref|YP_001971034.1| putative histone-like protein [Stenotrophomonas maltophilia K279a]
 gi|190011111|emb|CAQ44720.1| putative histone-like protein [Stenotrophomonas maltophilia K279a]
          Length = 132

 Score = 47.2 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFA---TFHVK 57
           + +T+S LV  I++  G+  KD    + +L + +  S   +G  +  +       T +V 
Sbjct: 33  EVLTKSGLVAHIAEASGVVAKDVRAVLASLESAVASSVHKKGAGSFTLPGLLKITTVNVP 92

Query: 58  QKGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92
            K  R G N  T +E           +  +    LK  
Sbjct: 93  AKPKRKGINPFTKEEQWFAAKPATTKLKVRPLKKLKDA 130


>gi|253582858|ref|ZP_04860077.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251835292|gb|EES63834.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 101

 Score = 46.8 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 35/97 (36%), Gaps = 1/97 (1%)

Query: 1  MSKTITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          M + +   + ++       L S K++ + +   +  +  +      + +  +  F  K+ 
Sbjct: 1  MGEVMKEGEFIRFYRDRNCLRSIKEAKKKIDLFWTVVLKALDEDGKVLLKDWGVFEKKEV 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
            R     +  +E  I     ++F+  + LK  +   
Sbjct: 61 APRKIMTPRMEKERVIKAGEKIIFRTGTGLKTLVNGA 97


>gi|253572388|ref|ZP_04849791.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838163|gb|EES66251.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 170

 Score = 46.8 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          L  +I     L+  D    +     ++  S  +G+ +KI    TFH+
Sbjct: 40 LADAIEANSSLTAGDVKHAIEAFVEQLRLSLTQGDKVKIDGLGTFHI 86


>gi|29346927|ref|NP_810430.1| hypothetical protein BT_1517 [Bacteroides thetaiotaomicron
          VPI-5482]
 gi|29338825|gb|AAO76624.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
          VPI-5482]
          Length = 176

 Score = 46.8 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          L  +I     L+  D    +     ++  S  +G+ +KI    TFH+
Sbjct: 40 LADAIEANSSLTAGDVKHAIEAFVEQLRLSLTQGDKVKIDGLGTFHI 86


>gi|298386430|ref|ZP_06995986.1| DNA-binding protein [Bacteroides sp. 1_1_14]
 gi|298260807|gb|EFI03675.1| DNA-binding protein [Bacteroides sp. 1_1_14]
          Length = 170

 Score = 46.8 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          L  +I     L+  D    +     ++  S  +G+ +KI    TFH+
Sbjct: 40 LADAIEANSSLTAGDVKHAIEAFVEQLRLSLTQGDKVKIDGLGTFHI 86


>gi|296120328|ref|YP_003628106.1| histone family protein DNA-binding protein [Planctomyces
           limnophilus DSM 3776]
 gi|296012668|gb|ADG65907.1| histone family protein DNA-binding protein [Planctomyces
           limnophilus DSM 3776]
          Length = 106

 Score = 46.8 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 9/100 (9%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAI-KISSFATFHVKQKG 60
           K ++++D+  +I++   LS+KD     T L + I      +G  +  +       V +K 
Sbjct: 7   KPLSKTDIFAAIAESTSLSKKDVQAVFTALNDLISKQVGKKGPGVFAVPGLLKIQVVRKP 66

Query: 61  SRVGR---NL-QTNQEVKI---DPRRVVVFKASSILKKRI 93
           +       N  +  + + +     R  V  +A   LK  +
Sbjct: 67  ATKATQRANPFKPGEMMVVKAKPARNTVKIRALKSLKDMV 106


>gi|298375884|ref|ZP_06985840.1| DNA-binding protein [Bacteroides sp. 3_1_19]
 gi|298266921|gb|EFI08578.1| DNA-binding protein [Bacteroides sp. 3_1_19]
          Length = 253

 Score = 46.8 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           + +         S  D    +    + + D  + G  +++    TF V  K  R      
Sbjct: 80  EFINRAKSRSSFSPADMKGILQLFQDMMVDFLMYGYNVELEGIGTFSVSLKS-RPVM--- 135

Query: 69  TNQEVKIDPRRV----VVFKASSILKKRIM 94
             ++ +I    +    V F++S  L+ R+ 
Sbjct: 136 --EKNEIRAESIHFKDVKFRSSKELRDRLK 163


>gi|114762939|ref|ZP_01442371.1| hypothetical protein 1100011001359_R2601_26496 [Pelagibaca
           bermudensis HTCC2601]
 gi|114544549|gb|EAU47556.1| hypothetical protein R2601_26496 [Roseovarius sp. HTCC2601]
          Length = 141

 Score = 46.8 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 30/73 (41%), Gaps = 9/73 (12%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
           + +LV  +    G+ ++++   V      + ++   G  +++  F    V         N
Sbjct: 56  KKELVDRVVARCGVKKREAKPSVEAALAILGEALAEGRELRLEPFGKLKVS--------N 107

Query: 67  LQT-NQEVKIDPR 78
           ++T  ++  I+ R
Sbjct: 108 IKTRGEKRVINAR 120


>gi|330885370|gb|EGH19519.1| hypothetical protein Pgy4_41759 [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 34

 Score = 46.8 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          R GRN  T   ++I  ++V+ F  + +L   I  
Sbjct: 1  RTGRNPSTGAAIEIAAKKVIKFVPAKVLTDSINK 34


>gi|253582816|ref|ZP_04860036.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251835392|gb|EES63933.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 93

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGLSR-KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +   D +K   +E  L   K++   ++T +  + +     + +    +  F +K   +R 
Sbjct: 1  MKEKDFIKVYKEERNLKNLKEAQHRISTFWETVEEILQEDKKLVFKGWGIFEIKPVRARE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
            + +  +  K  P+  +VF+   ILK+ I  D
Sbjct: 61 YCDPRIKKIKKTLPKNKLVFRQGKILKENINVD 93


>gi|26553701|ref|NP_757635.1| DNA-binding histone-like protein HU-alpha [Mycoplasma penetrans
           HF-2]
 gi|26453708|dbj|BAC44039.1| DNA-binding histone-like protein HU-alpha [Mycoplasma penetrans
           HF-2]
          Length = 121

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 34/92 (36%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           K +T+ +++K IS    +S       +  L + I     R E  ++       VK    +
Sbjct: 17  KPLTKKEIIKLISNNSNISEPIIKELIEDLLSLIKAELDRCEQFRLFDLGKIKVKPGHKK 76

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           +  N  T +      +  + F  S   K+ + 
Sbjct: 77  LTTNPLTGETSTEWTKSKIKFVFSKQYKELVE 108


>gi|319786712|ref|YP_004146187.1| histone family protein DNA-binding protein [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465224|gb|ADV26956.1| histone family protein DNA-binding protein [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 142

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 8/94 (8%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISSFA---TFHVKQKGS 61
           +S L+K +S+  G+  KD    +  + + +  +  +    +  +       +  V  K  
Sbjct: 47  KSALIKHLSETSGVVAKDVKAVLAAVEDAVSGAISKKGAGSFTLPGLFKVTSVKVPAKPK 106

Query: 62  RVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92
           R G N  T +E           V  +    LK  
Sbjct: 107 RKGINPFTKEEQWFAAKPASVKVKVRPLKKLKDA 140


>gi|281424532|ref|ZP_06255445.1| putative integration host factor subunit alpha [Prevotella oris
          F0302]
 gi|281401369|gb|EFB32200.1| putative integration host factor subunit alpha [Prevotella oris
          F0302]
          Length = 98

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +KT+T  DL++   +  GLS++   + +  L   I +    G  I + +F +F ++    
Sbjct: 3  NKTLTSIDLLRKAKERSGLSQEILRQSLRALLGAISEVMDDGNNIALDNFGSFELRTVKE 62

Query: 62 RVG-RNLQTNQEVKIDPRRVVVFKASS 87
           +       N  + +   +VV F+A  
Sbjct: 63 HIVTPPPPNNTPIVVPEHQVVRFRAYK 89


>gi|317063649|ref|ZP_07928134.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689325|gb|EFS26160.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 105

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 2  SKTITRSDLVKSISKEFGLSR--KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           + +T  + +    K+   S+  K+    +   ++ + ++      +    +  F  ++ 
Sbjct: 7  GEDMTEGEFI-RFYKKRNNSKSHKEVREKIDLFWDVLFEALNEDGKVVFQDWGVFEKRKM 65

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSIL 89
           SR        +    +P+ V+ F+A   L
Sbjct: 66 KSRKIMVPMWKESAYTEPKEVIKFRAGKGL 95


>gi|253583306|ref|ZP_04860504.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251833878|gb|EES62441.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 116

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/97 (11%), Positives = 33/97 (34%), Gaps = 1/97 (1%)

Query: 1   MSKTITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           M + +   + ++       L + K++   +   +  +  +      + +  +  F  K+ 
Sbjct: 16  MGEVMKEGEFIRFYRDRNCLRNIKEAKEKIDLFWTVVLKALAEDGKVSLKDWGVFEKKEV 75

Query: 60  GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
             R     +  +E        + F+  + LK  +  D
Sbjct: 76  SPRKIMTPRMEKERVTKAGEKIKFRTGTGLKTLVNGD 112


>gi|255014715|ref|ZP_05286841.1| hypothetical protein B2_12469 [Bacteroides sp. 2_1_7]
          Length = 253

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           + +         S  D    +    + + D  + G  +++    TF V  K  R      
Sbjct: 80  EFINRAKSRSSFSPADMKGILQLFQDMMVDFLMFGYNVELEGIGTFSVSLKS-RPVM--- 135

Query: 69  TNQEVKIDPRRV----VVFKASSILKKRIM 94
             ++ +I    +    V F++S  L+ R+ 
Sbjct: 136 --EKNEIRAESIHFKDVKFRSSKELRDRLK 163


>gi|270296533|ref|ZP_06202733.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317480255|ref|ZP_07939361.1| hypothetical protein HMPREF1007_02478 [Bacteroides sp. 4_1_36]
 gi|270273937|gb|EFA19799.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316903576|gb|EFV25424.1| hypothetical protein HMPREF1007_02478 [Bacteroides sp. 4_1_36]
          Length = 170

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          L  SI K   +++ D    +  L  EI  +   G+ +K++   TFH+  +
Sbjct: 40 LAASIQKNCAMTKGDVKHVIEALVEEIQGNLANGDKVKLNQLGTFHMTFR 89


>gi|257469402|ref|ZP_05633495.1| hypothetical protein FulcA4_08679 [Fusobacterium ulcerans ATCC
          49185]
          Length = 96

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 5  ITRSDLVKSISKEFGLSR--KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T  + +    K+   S+  K+    +   ++ + ++      +    +  F  ++  SR
Sbjct: 1  MTEGEFI-RFYKKRNNSKSHKEVREKIDLFWDVLFEALNEDGKVVFQDWGVFEKRKMKSR 59

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSIL 89
                  +    +P+ V+ F+A   L
Sbjct: 60 KIMVPMWKESAYTEPKEVIKFRAGKGL 86


>gi|72383831|ref|YP_293185.1| histone-like DNA-binding protein [Ralstonia eutropha JMP134]
 gi|72123174|gb|AAZ65328.1| Histone-like bacterial DNA-binding protein [Ralstonia eutropha
           JMP134]
          Length = 202

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 12/99 (12%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQ--- 58
           T  +S L+  + ++  L +K     +  L N I  +   +G     +     F V+    
Sbjct: 104 TFNKSSLLAHLIEQTQLEKKTVQTVLAHLENTIVSAIHKKGAGEFTLPGL--FKVQAIQV 161

Query: 59  --KGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92
                R G+N  T Q+           V  +    LK  
Sbjct: 162 PATKKRFGKNPFTGQDQWFAAKPASVKVKVRPLKKLKDA 200


>gi|298385982|ref|ZP_06995539.1| non-specific DNA-binding protein [Bacteroides sp. 1_1_14]
 gi|298261210|gb|EFI04077.1| non-specific DNA-binding protein [Bacteroides sp. 1_1_14]
          Length = 167

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 8   SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
           + +   I+    LS  D    +  L   +       +++ +  F TF V  K    G   
Sbjct: 34  AQIADEIAGYSSLSSGDVKNCIDNLVTVMTQHLQTSQSVTLEGFGTFRVVMKAGGKGV-- 91

Query: 68  QTNQEVKID-PRRVVVFKA 85
           +T +EV        V F+ 
Sbjct: 92  ETAKEVSASQASLTVRFQP 110


>gi|28198762|ref|NP_779076.1| histone-like protein [Xylella fastidiosa Temecula1]
 gi|71275828|ref|ZP_00652112.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
           Dixon]
 gi|71898513|ref|ZP_00680684.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
           Ann-1]
 gi|71901883|ref|ZP_00683943.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
           Ann-1]
 gi|170730191|ref|YP_001775624.1| histone-like protein [Xylella fastidiosa M12]
 gi|182681454|ref|YP_001829614.1| histone family protein DNA-binding protein [Xylella fastidiosa M23]
 gi|28056853|gb|AAO28725.1| histone-like protein [Xylella fastidiosa Temecula1]
 gi|71163406|gb|EAO13124.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
           Dixon]
 gi|71728354|gb|EAO30525.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
           Ann-1]
 gi|71731637|gb|EAO33697.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
           Ann-1]
 gi|167964984|gb|ACA11994.1| histone-like protein [Xylella fastidiosa M12]
 gi|182631564|gb|ACB92340.1| histone family protein DNA-binding protein [Xylella fastidiosa M23]
 gi|307579904|gb|ADN63873.1| histone family protein DNA-binding protein [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 130

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFA---TFHVK 57
           +T+++S LV  +++   L+ KD    +  L N I  S   +G  +  +       T +V 
Sbjct: 31  ETLSKSALVAHLAESSALAAKDVRTLLGALENTIHASLHKKGVGSFTLPGLLKISTVNVP 90

Query: 58  QKGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92
            K  R G N  T +E           +  +    LK  
Sbjct: 91  AKPKRKGINPFTKEEQWFAAKPASVKIKTRPLKKLKDA 128


>gi|154493980|ref|ZP_02033300.1| hypothetical protein PARMER_03325 [Parabacteroides merdae ATCC
           43184]
 gi|154086240|gb|EDN85285.1| hypothetical protein PARMER_03325 [Parabacteroides merdae ATCC
           43184]
          Length = 148

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 16/94 (17%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           +L   IS +   S  D    +  L N +  +  +GE +K+    +F ++      G    
Sbjct: 38  ELCDLISAQSTASSGDVKLILDELVNVMRRNLGKGEVVKVGELGSFQLQ-----FG---S 89

Query: 69  TNQEVK-------IDPRRVVVFKASSILKKRIMD 95
           T    +       I  RR+V F+   +LK  I +
Sbjct: 90  TGTLTEKEFSHALIKSRRIV-FRPGKLLKDAIKN 122


>gi|89055007|ref|YP_510458.1| hypothetical protein Jann_2516 [Jannaschia sp. CCS1]
 gi|88864556|gb|ABD55433.1| hypothetical protein Jann_2516 [Jannaschia sp. CCS1]
          Length = 169

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 27/58 (46%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           R DL+++++K   L R ++      + +EI  +    + + +       +K++  + G
Sbjct: 82  RPDLIEAVAKRVSLKRSEAKMVFDVVLDEIGKALDASDEVVVPPLGKLMIKKRVEKPG 139


>gi|262383760|ref|ZP_06076896.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|301311932|ref|ZP_07217854.1| putative DNA-binding protein [Bacteroides sp. 20_3]
 gi|262294658|gb|EEY82590.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|300830034|gb|EFK60682.1| putative DNA-binding protein [Bacteroides sp. 20_3]
          Length = 211

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           + +         S  D    +    + + D  + G  +++    TF V  K  R      
Sbjct: 38  EFISRAKSRSSFSPADMKGILQLFQDMMVDFLMFGYNVELEGIGTFSVSLKS-RPVM--- 93

Query: 69  TNQEVKIDPRRV----VVFKASSILKKRIM 94
             ++ +I    +    V F++S  L+ R+ 
Sbjct: 94  --EKNEIRAESIHFKDVKFRSSKELRDRLK 121


>gi|295087874|emb|CBK69397.1| DNA-binding protein, histone-like, putative [Bacteroides
          xylanisolvens XB1A]
          Length = 164

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          I +  L  +I     L+  D    +    +++  S  +G+ +KI    TFH+
Sbjct: 37 INK--LADAIEANSSLTAGDVKHSIEAFVDQLRLSLTQGDKVKIDGLGTFHI 86


>gi|257470500|ref|ZP_05634590.1| hypothetical protein FulcA4_14234 [Fusobacterium ulcerans ATCC
          49185]
 gi|317064707|ref|ZP_07929192.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690383|gb|EFS27218.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 93

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGLSR-KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +   D +K    E  L   K++   ++T +  + +     + +    +  F +K   +R 
Sbjct: 1  MKEKDFIKVYKDERNLKNLKEAQHRISTFWETVEEILQEDKKLVFKGWGIFEIKPVRARE 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
            + +  +  K  P+  +VF+   ILK+ I  D
Sbjct: 61 YCDPRIKKIKKTLPKNKLVFRQGKILKENINVD 93


>gi|86153462|ref|ZP_01071666.1| DNA-binding protein HU 1 [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843188|gb|EAQ60399.1| DNA-binding protein HU 1 [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 45

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 58  QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           ++ +R  R   T + +K+   RV  FK    LK+ +      +K
Sbjct: 1   ERAAREARVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKK 44


>gi|213609751|ref|ZP_03369577.1| integration host factor subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-2068]
          Length = 43

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 5  ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAI 46
          +T+S+L++ ++ ++  +  K     V  +   +  +  +GE I
Sbjct: 1  MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERI 43


>gi|224024162|ref|ZP_03642528.1| hypothetical protein BACCOPRO_00885 [Bacteroides coprophilus DSM
           18228]
 gi|224017384|gb|EEF75396.1| hypothetical protein BACCOPRO_00885 [Bacteroides coprophilus DSM
           18228]
          Length = 146

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 10/107 (9%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF--HVKQKGSRVGRN 66
           ++ + IS+   ++R D    +  L +E  D    GE +++    TF   +  KG+ V   
Sbjct: 37  EIAEKISRSTTVTRADVKAVLAALEDETIDLLQNGEIVQLGDLGTFRASISSKGAEVA-- 94

Query: 67  LQTNQEVKIDPRRVVV--FKASSILKKRIMDDMRGRKCNKDDVTSPS 111
               +E  +   + V   F+ S  +   +      R   K D    +
Sbjct: 95  ----EEYNVSMIKGVKVIFRPSKKISDAMQTASFERVAPKKDAEEAT 137


>gi|160886237|ref|ZP_02067240.1| hypothetical protein BACOVA_04244 [Bacteroides ovatus ATCC 8483]
 gi|156108122|gb|EDO09867.1| hypothetical protein BACOVA_04244 [Bacteroides ovatus ATCC 8483]
          Length = 168

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          I +  L  +I     L+  D    +     ++  S  +G+ +KI    TFH+
Sbjct: 37 INK--LADAIEANSSLTAGDVKHSIEAFVEQLRLSLTQGDKVKIDGLGTFHI 86


>gi|237715003|ref|ZP_04545484.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409048|ref|ZP_06085593.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645039|ref|ZP_06722766.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294807143|ref|ZP_06765960.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|298483450|ref|ZP_07001627.1| DNA-binding protein [Bacteroides sp. D22]
 gi|299146738|ref|ZP_07039806.1| putative DNA-binding protein [Bacteroides sp. 3_1_23]
 gi|229444836|gb|EEO50627.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262353259|gb|EEZ02354.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292639618|gb|EFF57909.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294445643|gb|EFG14293.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|298270398|gb|EFI11982.1| DNA-binding protein [Bacteroides sp. D22]
 gi|298517229|gb|EFI41110.1| putative DNA-binding protein [Bacteroides sp. 3_1_23]
          Length = 164

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          I +  L  +I     L+  D    +     ++  S  +G+ +KI    TFH+
Sbjct: 37 INK--LADAIEANSSLTAGDVKHSIEAFVEQLRLSLTQGDKVKIDGLGTFHI 86


>gi|194291906|ref|YP_002007813.1| histone-like DNA-binding protein [Cupriavidus taiwanensis LMG
           19424]
 gi|193225810|emb|CAQ71756.1| putative Histone-like DNA-binding protein [Cupriavidus taiwanensis
           LMG 19424]
          Length = 196

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 8/97 (8%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATF---HVKQ 58
           T  +S LV  +  +  L  K     +  L N I  +   +G     +          V  
Sbjct: 98  TFNKSSLVAHLVAQTQLEAKAVKTVLAHLENTIVGALNKKGAGEFTLPGLLKVTAQQVPA 157

Query: 59  KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92
           K  R G++  T +E           V  +    LK  
Sbjct: 158 KKKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 194


>gi|253570191|ref|ZP_04847600.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840572|gb|EES68654.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 158

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 14/89 (15%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+  ++  I+    ++  D    +  L   I  +   G  I++    +F    + S  G
Sbjct: 32  MTQRQIIDQIADRCTVTGSDVKAVLDALMTVIKRNLANGSPIRLGDLGSF----RPSVSG 87

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
                     I    V  F AS++ K R+
Sbjct: 88  ----------IGSENVDKFTASNVKKARV 106


>gi|241589931|ref|YP_002979956.1| histone family protein DNA-binding protein [Ralstonia pickettii
           12D]
 gi|240868643|gb|ACS66302.1| histone family protein DNA-binding protein [Ralstonia pickettii
           12D]
          Length = 135

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 8/97 (8%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ----- 58
           T T++ LV  ++++ G+  K     +  L + I  +  +  A + S    F V       
Sbjct: 37  TFTKASLVSHLAEQAGVEAKAVKAVLQHLESTILGALHKKGAGEFSLPGLFKVTSVKVPA 96

Query: 59  KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92
              R G+N  T QE           V  +    +K  
Sbjct: 97  TKRRFGKNPFTGQEQWFEAKPASVRVKVRPLKKVKDA 133


>gi|29349440|ref|NP_812943.1| putative non-specific DNA-binding protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29341349|gb|AAO79137.1| conserved hypothetical protein, putative non-specific DNA-binding
           protein [Bacteroides thetaiotaomicron VPI-5482]
          Length = 158

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 14/89 (15%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T+  ++  I+    ++  D    +  L   I  +   G  I++    +F    + S  G
Sbjct: 32  MTQRQIIDQIADRCTVTGSDVKAVLDALMTVIKRNLANGSPIRLGDLGSF----RPSVSG 87

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
                     I    V  F AS++ K R+
Sbjct: 88  ----------IGSENVDKFTASNVKKARV 106


>gi|256841119|ref|ZP_05546626.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256736962|gb|EEU50289.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 253

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           + +         S  D    +    + + D  + G  +++    TF V  K  R      
Sbjct: 80  EFISRAKSRSSFSPADMKGILQLFQDMMVDFLMFGYNVELEGIGTFSVSLKS-RPVM--- 135

Query: 69  TNQEVKIDPRRV----VVFKASSILKKRIM 94
             ++ +I    +    V F++S  L+ R+ 
Sbjct: 136 --EKNEIRAESIHFKDVKFRSSKELRDRLK 163


>gi|323137749|ref|ZP_08072825.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC
           49242]
 gi|322397046|gb|EFX99571.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC
           49242]
          Length = 129

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 9/99 (9%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RG-EAIKISSFATFHVKQKG 60
           +T+T+S L+  I+++  L RK +     TL +    S   RG     +       +++  
Sbjct: 28  ETLTKSALINLIAEQNELPRKTAVGVYATLESVFLGSVHPRGVGEFTLPGLLKVTLRKVP 87

Query: 61  SRVG----RNLQTNQEVK---IDPRRVVVFKASSILKKR 92
           +R      RN  T + VK         V  +A S LK  
Sbjct: 88  ARKAGTLVRNPATGEMVKGAAKPASVRVKIRALSKLKNA 126


>gi|212211792|ref|YP_002302728.1| DNA-binding protein [Coxiella burnetii CbuG_Q212]
 gi|212010202|gb|ACJ17583.1| bacterial DNA-binding protein [Coxiella burnetii CbuG_Q212]
          Length = 78

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 26 TRFVTTLFNEICDSAVRG--EAIKISSFATFHVKQK---GSRVGRNLQTNQEVKI---DP 77
          +  +  L + +     +G      +       VK+K    +R G N  T + +       
Sbjct: 2  SAVLDELADVMHRHLRKGAAGEFTLPGLVKCTVKRKPATKARKGINPFTGEMMTFKAKPA 61

Query: 78 RRVVVFKASSILKKRIM 94
          R VV  +A   LK+ + 
Sbjct: 62 RNVVKVRALKRLKEMVE 78


>gi|293372623|ref|ZP_06619005.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|292632432|gb|EFF51028.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
          Length = 168

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          I +  L  +I     L+  D    +     ++  S  +G+ +K+    TFH+
Sbjct: 37 INK--LADAIEANSSLTAGDVKHAIEAFVEQLRLSLTQGDKVKVDGLGTFHI 86


>gi|237723083|ref|ZP_04553564.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|260173644|ref|ZP_05760056.1| hypothetical protein BacD2_17350 [Bacteroides sp. D2]
 gi|315921907|ref|ZP_07918147.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|229447605|gb|EEO53396.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|313695782|gb|EFS32617.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 168

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          I +  L  +I     L+  D    +     ++  S  +G+ +K+    TFH+
Sbjct: 37 INK--LADAIEANSSLTAGDVKHAIEAFVEQLRLSLTQGDKVKVDGLGTFHI 86


>gi|29348608|ref|NP_812111.1| putative non-specific DNA-binding protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253569051|ref|ZP_04846461.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29340513|gb|AAO78305.1| putative non-specific DNA-binding protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251841070|gb|EES69151.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 168

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 3/79 (3%)

Query: 8   SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
           S + K I+    LS  D    +  L   +       E++ +  F TF +  K +  G   
Sbjct: 34  SQIAKEIAAYSSLSPGDVKNTLDNLVTVMGQHLQASESVSLDGFGTFRMVMKSNGKGV-- 91

Query: 68  QTNQEVKID-PRRVVVFKA 85
           +T++EV        V F  
Sbjct: 92  ETSEEVSAAQASLTVRFLP 110


>gi|218682665|ref|ZP_03530266.1| histone-like DNA-binding protein [Rhizobium etli CIAT 894]
          Length = 57

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 20/48 (41%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53
          T +++   I+   GL++  +   V  +F  I D+A       I  F  
Sbjct: 3  TTNEIADKIAANNGLTKVQANGIVEAVFQAIADAAGSDAETSIPGFGK 50


>gi|257468390|ref|ZP_05632484.1| hypothetical protein FulcA4_03554 [Fusobacterium ulcerans ATCC
          49185]
 gi|317062663|ref|ZP_07927148.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688339|gb|EFS25174.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 96

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 34/86 (39%), Gaps = 1/86 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T  + ++   K   + + K     +   ++ +  +    + + + ++  F  K++ +R 
Sbjct: 1  MTEGEFIRFYKKRNKIKNHKAVKEKIDLFWDVLLKALDEDKKVALQNWGVFEKKERKARK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSIL 89
                 +    +P+  V FKA   L
Sbjct: 61 VLMPMWEEAGYTEPKEAVKFKAGKAL 86


>gi|58425631|gb|AAW74668.1| histone-like protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 192

 Score = 44.9 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 22/105 (20%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH------- 55
           + ++++ LV  I++   L+ KD    + +L      S  +          TF        
Sbjct: 93  EALSKTGLVAHIAESTQLAPKDVRAVLASLEATAHASLSK------KGVGTFTIPGMLKL 146

Query: 56  ----VKQKGSRVGRNLQTNQEVKI----DPRRVVVFKASSILKKR 92
               V  K  R G N  T +E +I         +  +    LK  
Sbjct: 147 TTVHVPAKPKRKGINPFTKEE-QIFAAKPATSKIKSRMMKRLKDA 190


>gi|254777677|ref|ZP_05219193.1| bacterial nucleoid DNA-binding protein [Mycobacterium avium
          subsp. avium ATCC 25291]
          Length = 43

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 19/42 (45%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA 45
           + R +LV ++++  G ++   +  +  LF        +GE 
Sbjct: 2  AMNRKELVAAVAERSGNTQAAVSDVLDALFEVFTAQVKKGEK 43


>gi|319788815|ref|YP_004090130.1| hypothetical protein Rumal_3814 [Ruminococcus albus 7]
 gi|315450682|gb|ADU24244.1| hypothetical protein Rumal_3814 [Ruminococcus albus 7]
          Length = 81

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 36/86 (41%), Gaps = 15/86 (17%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          +  K ++   G+S + + R++ ++ + +      GE +++ SF  F V            
Sbjct: 5  EFTKELASRKGISEQSAYRYINSVMDVLRQVLTEGEEVRVGSFGRFTVVT---------- 54

Query: 69 TNQEVKIDPRRVVVFKASSILKKRIM 94
                +   + V+F ++  LK+ + 
Sbjct: 55 -----DLSGDKTVMFCSAKSLKQAVN 75


>gi|254485852|ref|ZP_05099057.1| DNA-binding protein HU, putative [Roseobacter sp. GAI101]
 gi|214042721|gb|EEB83359.1| DNA-binding protein HU, putative [Roseobacter sp. GAI101]
          Length = 101

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 6/56 (10%), Positives = 22/56 (39%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          +   + + +L+  + +   + +KD+   V  +   + ++      + +     F V
Sbjct: 9  VGPVMRKKELIDLVVERSSIKKKDAKPVVEAMLAVLGEALADNRELNLLPMGKFKV 64


>gi|257468469|ref|ZP_05632563.1| hypothetical protein FulcA4_03949 [Fusobacterium ulcerans ATCC
          49185]
 gi|317062730|ref|ZP_07927215.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688406|gb|EFS25241.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 96

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 5  ITRSDLVKSISKEFGLSR--KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T  + +    K+   S+  K+    +   +N +  +    + + + ++  F  +++  R
Sbjct: 1  MTEGEFI-RFYKKRNNSKSHKEVREKIDLFWNVLLKALDEDKKVILKNWGVFEKRERKVR 59

Query: 63 VGRNLQTNQEVK-IDPRRVVVFKASSIL 89
                T ++ + I P+ +V F+    L
Sbjct: 60 KVLVP-TWEKAQYIKPKEIVKFRTGKSL 86


>gi|163857634|ref|YP_001631932.1| histone-like protein [Bordetella petrii DSM 12804]
 gi|163261362|emb|CAP43664.1| histone-like protein [Bordetella petrii]
          Length = 142

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 8/98 (8%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQ-- 58
           + + +S L+  + ++ G+  K     +  L   +  S   +G     +       V++  
Sbjct: 43  QALNKSQLIAHLVEQTGVEAKSVKAVLAGLEGAVLGSVDKKGAGEFSLPGLFKVTVQKVP 102

Query: 59  -KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92
            K  R G++  T +E           V  +    LK  
Sbjct: 103 AKAKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 140


>gi|150008887|ref|YP_001303630.1| hypothetical protein BDI_2282 [Parabacteroides distasonis ATCC
           8503]
 gi|149937311|gb|ABR44008.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
          Length = 211

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           + +         S  D    +    + + D  + G  +++    TF V  K  R      
Sbjct: 38  EFINRAKSRSSFSPADMKGILQLFQDMMVDFLMFGYNVELEGIGTFSVSLKS-RPVM--- 93

Query: 69  TNQEVKIDPRRV----VVFKASSILKKRIM 94
             ++ ++    +    V F++S  L+ R+ 
Sbjct: 94  --EKNEVRAESIHFKDVKFRSSKELRDRLK 121


>gi|193891023|gb|ACF28665.1| basic nuclear protein [Amphidinium carterae]
          Length = 108

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK-- 59
           ++ +T S+  K+++++  L  KD    + +L     +   +  + K++      +  K  
Sbjct: 10  TEALTMSEAYKTVAEKMELKPKDVKGIMQSLLELSTEQVKKSGSFKLAGMLNMKLISKPA 69

Query: 60  -GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94
             +R G N  T +          + V   A   LK+ + 
Sbjct: 70  TKARKGLNPFTKEPCVFKAKPASKSVKVLALKKLKEALN 108


>gi|330825266|ref|YP_004388569.1| histone family protein DNA-binding protein [Alicycliphilus
          denitrificans K601]
 gi|329310638|gb|AEB85053.1| histone family protein DNA-binding protein [Alicycliphilus
          denitrificans K601]
          Length = 70

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 23/41 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA 45
          + R++LV+ ++    LS+  +   + TL + I  +  +G+A
Sbjct: 1  MNRAELVEILASRNDLSKTAANAVLETLIDTIKTAVKKGDA 41


>gi|160891239|ref|ZP_02072242.1| hypothetical protein BACUNI_03687 [Bacteroides uniformis ATCC 8492]
 gi|156859460|gb|EDO52891.1| hypothetical protein BACUNI_03687 [Bacteroides uniformis ATCC 8492]
          Length = 208

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 18/96 (18%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L + ++   G+S  D    +  L   I ++ + GE++ I    +FHV            T
Sbjct: 72  LAQRMASRKGMSSGDVQSVLIDLPKFIEEALMEGESVTIKGLGSFHVA----------VT 121

Query: 70  NQEVK----IDPRRV----VVFKASSILKKRIMDDM 97
           +   +    + P +V    V F+    L  R+   M
Sbjct: 122 SDGFEHPDDVMPGKVRLSRVYFRPDKSLVARLNSGM 157


>gi|60683049|ref|YP_213193.1| hypothetical protein BF3598 [Bacteroides fragilis NCTC 9343]
 gi|253566190|ref|ZP_04843644.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|60494483|emb|CAH09280.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
 gi|251945294|gb|EES85732.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 163

 Score = 44.5 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          DL + +S     S+ +    +T L + I +    GE++ I    +F
Sbjct: 39 DLAEILSANSSRSKGEVLSILTDLPDVIEEILKNGESVSIRGLGSF 84


>gi|265766940|ref|ZP_06094769.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263253317|gb|EEZ24793.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 163

 Score = 44.5 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          DL + +S     S+ +    +T L + I +    GE++ I    +F
Sbjct: 39 DLAEILSANSSRSKGEVLSILTDLPDVIEEILKNGESVSIRGLGSF 84


>gi|189425628|ref|YP_001952805.1| hypothetical protein Glov_2572 [Geobacter lovleyi SZ]
 gi|189421887|gb|ACD96285.1| conserved hypothetical protein [Geobacter lovleyi SZ]
          Length = 459

 Score = 44.5 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 67  LQTNQEVKIDPRRVVVFKASSILKKRIMD 95
            +  + + I+ R+VV FK SS+LK  I  
Sbjct: 432 PR-GEAITIEVRKVVTFKPSSVLKDAINK 459


>gi|60683127|ref|YP_213271.1| putative non-specific DNA-binding protein [Bacteroides fragilis
          NCTC 9343]
 gi|60494561|emb|CAH09361.1| putative non-specific DNA-binding protein [Bacteroides fragilis
          NCTC 9343]
          Length = 148

 Score = 44.5 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 27/59 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          + K ++   L + I+++  L+  D    V  L   +  + +  + +++    TF +K +
Sbjct: 17 VGKVVSTQQLAEMIAEKSSLTPGDVHNVVRNLMTAMRSALLDSKTVRLDGLGTFTMKAR 75


>gi|329960180|ref|ZP_08298622.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
 gi|328532853|gb|EGF59630.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
          Length = 165

 Score = 44.5 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 24/55 (43%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          L +SI+++  L++ D    +  L   +    +    +++    TF +K +    G
Sbjct: 38 LAESIAEKSSLTQGDVHNVIRNLMTTMRQHLLNSRTVRLDGLGTFTMKARTRGKG 92


>gi|253566328|ref|ZP_04843782.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251945432|gb|EES85870.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 159

 Score = 44.5 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 27/59 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          + K ++   L + I+++  L+  D    V  L   +  + +  + +++    TF +K +
Sbjct: 28 VGKVVSTQQLAEMIAEKSSLTPGDVHNVVRNLMTAMRSALLDSKTVRLDGLGTFTMKAR 86


>gi|119476899|ref|ZP_01617180.1| DNA-binding protein HU, putative [marine gamma proteobacterium
           HTCC2143]
 gi|119449706|gb|EAW30943.1| DNA-binding protein HU, putative [marine gamma proteobacterium
           HTCC2143]
          Length = 216

 Score = 44.5 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 22/104 (21%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV------ 56
           + +T+S +   I +   LSRK     V  +F E+ +S + G +I       F +      
Sbjct: 116 QKMTKSQMFTDIGEATDLSRKQ----VGAVFAEL-ESLI-GRSIAKRGLGEFTIPGLMKV 169

Query: 57  -----KQKGSRVGRNLQTNQEVKI----DPRRVVVFKASSILKK 91
                  K +R G N  T +E +I         V  +    LK+
Sbjct: 170 TTVKKAAKKARKGINPFTGEE-QIFKAKPASIAVKVRPLKKLKE 212


>gi|289651720|ref|ZP_06483063.1| hypothetical protein Psyrpa2_28829 [Pseudomonas syringae pv.
          aesculi str. 2250]
          Length = 36

 Score = 44.5 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
          GRN  T   ++I  ++VV F ++ +L   I   
Sbjct: 1  GRNPSTGASIEIAAKKVVKFVSAKVLNDAINKG 33


>gi|53715193|ref|YP_101185.1| putative non-specific DNA binding protein [Bacteroides fragilis
          YCH46]
 gi|265767021|ref|ZP_06094850.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52218058|dbj|BAD50651.1| putative non-specific DNA binding protein [Bacteroides fragilis
          YCH46]
 gi|263253398|gb|EEZ24874.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301164639|emb|CBW24198.1| putative non-specific DNA-binding protein [Bacteroides fragilis
          638R]
          Length = 159

 Score = 44.5 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 27/59 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          + K ++   L + I+++  L+  D    V  L   +  + +  + +++    TF +K +
Sbjct: 28 VGKVVSTQQLAEMIAEKSSLTPGDVHNVVRNLMTAMRSALLDSKTVRLDGLGTFTMKAR 86


>gi|150007208|ref|YP_001301951.1| hypothetical protein BDI_0553 [Parabacteroides distasonis ATCC
           8503]
 gi|298375201|ref|ZP_06985158.1| DNA-binding protein [Bacteroides sp. 3_1_19]
 gi|301310786|ref|ZP_07216725.1| putative DNA-binding protein [Bacteroides sp. 20_3]
 gi|149935632|gb|ABR42329.1| hypothetical protein BDI_0553 [Parabacteroides distasonis ATCC
           8503]
 gi|298267701|gb|EFI09357.1| DNA-binding protein [Bacteroides sp. 3_1_19]
 gi|300832360|gb|EFK62991.1| putative DNA-binding protein [Bacteroides sp. 20_3]
          Length = 234

 Score = 44.5 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 22/50 (44%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53
           T++  D    I++E  L++ D    +      +  +  +G  +++  F T
Sbjct: 110 TLSTQDAADQIAEESSLTKGDVLNVLDRYQRYVIKNLQKGYKVELLGFGT 159


>gi|53715090|ref|YP_101082.1| hypothetical protein BF3806 [Bacteroides fragilis YCH46]
 gi|52217955|dbj|BAD50548.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|301164515|emb|CBW24074.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 163

 Score = 44.5 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          DL + +S     S+ +    +T L + I +    GE++ I    +F
Sbjct: 39 DLAEILSANSSRSKGEVLSILTDLPDVIEEILKNGESVSIRGLGSF 84


>gi|255011319|ref|ZP_05283445.1| putative non-specific DNA binding protein [Bacteroides fragilis
          3_1_12]
          Length = 159

 Score = 44.5 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 27/59 (45%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          + K ++   L + I+++  L+  D    V  L   +  + +  + +++    TF +K +
Sbjct: 28 VGKVVSTQQLAEMIAEKSSLTPGDVHNVVRNLMTAMRSALLDSKTVRLDGLGTFTMKAR 86


>gi|329963366|ref|ZP_08301007.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
 gi|328528726|gb|EGF55679.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
          Length = 168

 Score = 44.5 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          L  +I K   ++R D    +  L  EI      G+ ++++   TFH+  +
Sbjct: 40 LASNIQKNCAMTRGDVKHVIEALVEEIQGHLANGDKVRLNQLGTFHMTFR 89


>gi|270294519|ref|ZP_06200721.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275986|gb|EFA21846.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 208

 Score = 44.1 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 18/96 (18%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L + ++   G+S  D    +  L   I ++ + GE++ I    +FHV            T
Sbjct: 72  LAQRMASRKGMSSGDVQSVLIDLPKFIEEALMEGESVTIKGLGSFHVA----------VT 121

Query: 70  NQEVK----IDPRRV----VVFKASSILKKRIMDDM 97
           +   +    + P +V    V F+    L  R+   M
Sbjct: 122 SDGFEHPDDVMPGKVRLSRVYFRPDKSLVARLNSGM 157


>gi|319901958|ref|YP_004161686.1| DNA-binding protein [Bacteroides helcogenes P 36-108]
 gi|319416989|gb|ADV44100.1| DNA-binding protein [Bacteroides helcogenes P 36-108]
          Length = 162

 Score = 44.1 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG----- 64
          L +SI+++  L+  D    +  L + +    +    +++    TF +K +    G     
Sbjct: 37 LAESIAEKSSLTPGDVHNVIRNLLSVMRQQLLNSRTVRLDGLGTFTMKARTRGKGVSKEE 96

Query: 65 RNL 67
           N 
Sbjct: 97 VNP 99


>gi|86137493|ref|ZP_01056070.1| DNA-binding protein HU, putative [Roseobacter sp. MED193]
 gi|85825828|gb|EAQ46026.1| DNA-binding protein HU, putative [Roseobacter sp. MED193]
          Length = 186

 Score = 44.1 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 23/56 (41%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
             + + +L+       G+ +KD+   V  L   + ++   G  + +  F   HV +
Sbjct: 87  PALNKRELIDEAVLRSGVKKKDAKPVVEALLAILGETVAAGRDLNLKPFGKLHVNR 142


>gi|189468134|ref|ZP_03016919.1| hypothetical protein BACINT_04529 [Bacteroides intestinalis DSM
          17393]
 gi|189436398|gb|EDV05383.1| hypothetical protein BACINT_04529 [Bacteroides intestinalis DSM
          17393]
          Length = 169

 Score = 44.1 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 22/47 (46%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          L + ++   G+S  D    +  L   I ++   GE++ I    +F++
Sbjct: 40 LAQRMAHRKGMSEGDVQSVLVDLPKYIEEALREGESVTIRGLGSFNL 86


>gi|313149129|ref|ZP_07811322.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137896|gb|EFR55256.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 175

 Score = 44.1 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 27/59 (45%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
           + K ++   L + I+++  L+  D    V  L   +  + +  + +++    TF +K +
Sbjct: 44  VGKVVSTQQLAEMIAEKSSLTPGDVHNVVRNLMTAMRSALLDSKTVRLDGLGTFTMKAR 102


>gi|216565|dbj|BAA02149.1| HU2 protein [Escherichia coli W3110]
          Length = 35

 Score = 44.1 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 18/35 (51%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDS 39
          + ++ L+  I+++  LS+  +   + +    I +S
Sbjct: 1  MNKTQLIDVIAEKAELSKTQAKAALESTLAAITES 35


>gi|297520878|ref|ZP_06939264.1| transcriptional regulator HU subunit alpha [Escherichia coli
          OP50]
          Length = 29

 Score = 43.7 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          N QT +E+KI    V  F +   LK  + 
Sbjct: 1  NPQTGKEIKIAAANVPAFVSGKALKDAVK 29


>gi|325851847|ref|ZP_08171012.1| putative DNA-binding protein [Prevotella denticola CRIS 18C-A]
 gi|327312543|ref|YP_004327980.1| putative DNA-binding protein [Prevotella denticola F0289]
 gi|325484689|gb|EGC87602.1| putative DNA-binding protein [Prevotella denticola CRIS 18C-A]
 gi|326945112|gb|AEA20997.1| putative DNA-binding protein [Prevotella denticola F0289]
          Length = 144

 Score = 43.7 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          +T  +L  +I +    SR D    V  L +EI      GE + +     FH+
Sbjct: 31 VTTEELADAIQENTSFSRGDVRGLVIALVDEISYRLREGETVALEGLGRFHL 82


>gi|317481124|ref|ZP_07940201.1| hypothetical protein HMPREF1007_03320 [Bacteroides sp. 4_1_36]
 gi|316902725|gb|EFV24602.1| hypothetical protein HMPREF1007_03320 [Bacteroides sp. 4_1_36]
          Length = 176

 Score = 43.7 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 18/96 (18%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L + ++   G+S  D    +  L   I ++ + GE++ I    +FHV            T
Sbjct: 40  LAQRMASRKGMSSGDVQSVLIDLPKFIEEALMEGESVTIKGLGSFHVA----------VT 89

Query: 70  NQEVK----IDPRRV----VVFKASSILKKRIMDDM 97
           +   +    + P +V    V F+    L  R+   M
Sbjct: 90  SDGFEHPDDVMPGKVRLSRVYFRPDKSLVARLNSGM 125


>gi|115523980|ref|YP_780891.1| histone family protein DNA-binding protein [Rhodopseudomonas
          palustris BisA53]
 gi|115517927|gb|ABJ05911.1| histone family protein DNA-binding protein [Rhodopseudomonas
          palustris BisA53]
          Length = 98

 Score = 43.7 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 7/99 (7%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M+K ++++ L+ +IS+   +S+ D    +  +               I  FA   V  K 
Sbjct: 1  MAK-MSKAQLIDAISESSSVSKSDVKAVIEHMATVGYKELNEVGEFVIPGFAKMSVVNKP 59

Query: 61 ---SRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
             +R G N  T + ++       + V      + K  +
Sbjct: 60 ATEARSGINPFTKEPMEFAAKPASKTVKASPLKVAKDAV 98


>gi|257468104|ref|ZP_05632200.1| hypothetical protein FulcA4_02132 [Fusobacterium ulcerans ATCC
          49185]
 gi|317062389|ref|ZP_07926874.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688065|gb|EFS24900.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 96

 Score = 43.7 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 3/95 (3%)

Query: 5  ITRSDLVKSISKEFGLSR--KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T  + +    K+   S+  K+    +   +N +  +    + +   ++  F  +++  R
Sbjct: 1  MTEGEFI-RFYKKRNNSKSHKEVREKIDLFWNVLLKALDEDKKVIFKNWGVFEKRERKVR 59

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
                  +     P+ VV F+A   L +    D 
Sbjct: 60 KILVPMWEEAGYTKPKEVVKFRAGKSLIEIANGDT 94


>gi|256026933|ref|ZP_05440767.1| hypothetical protein PrD11_02876 [Fusobacterium sp. D11]
 gi|289764919|ref|ZP_06524297.1| predicted protein [Fusobacterium sp. D11]
 gi|289716474|gb|EFD80486.1| predicted protein [Fusobacterium sp. D11]
          Length = 117

 Score = 43.7 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 18  FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTN--QEVKI 75
              S K +   +      I ++ +  E I+I  F +F + ++   +G    +   + VK 
Sbjct: 25  SNTSEKRARILIENFGEAIKETLLTEEIIRIKKFGSFLLTERKEWIGTLPGSGGKKRVKF 84

Query: 76  DPRRVVVFKASSILKKRIMDD---MRGRKCNKD 105
              + + FK    ++K++++D   MRG K  K+
Sbjct: 85  SATKTLRFKFPRDVRKKLLEDIEKMRGEKNEKN 117


>gi|153806941|ref|ZP_01959609.1| hypothetical protein BACCAC_01217 [Bacteroides caccae ATCC 43185]
 gi|149130061|gb|EDM21271.1| hypothetical protein BACCAC_01217 [Bacteroides caccae ATCC 43185]
          Length = 165

 Score = 43.7 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 8   SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
           S + K I+    LS  D    +  L   +       E++ +  F TF +  K +  G   
Sbjct: 34  SQISKEIAAYSSLSPGDVKNTLDNLVTVVSQHLQSSESVTLDGFGTFRLVMKSNGKGV-- 91

Query: 68  QTNQEVKID-PRRVVVFKA 85
           +T  +V        V F  
Sbjct: 92  KTVDDVSAAQASLTVRFLP 110


>gi|153809594|ref|ZP_01962262.1| hypothetical protein BACCAC_03912 [Bacteroides caccae ATCC 43185]
 gi|149127771|gb|EDM18995.1| hypothetical protein BACCAC_03912 [Bacteroides caccae ATCC 43185]
          Length = 174

 Score = 43.7 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          +  +I  +  L+  D    +     ++  S  +G+ +KI    TFH+
Sbjct: 40 MAAAIESKSSLTAGDVKHTIEAFVEQLRLSLTQGDKVKIDGLGTFHI 86


>gi|121593962|ref|YP_985858.1| histone family protein DNA-binding protein [Acidovorax sp. JS42]
 gi|120606042|gb|ABM41782.1| histone family protein DNA-binding protein [Acidovorax sp. JS42]
          Length = 179

 Score = 43.7 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQ-- 58
           +T+T+S LV  ++++  +  K     +  L + +  S   +G  A  +       V++  
Sbjct: 80  ETLTKSALVAHLAEQSNVEPKAVKAVLAALESAVLGSVHKKGAGAFVLPGLLKIDVQKVP 139

Query: 59  -KGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92
            K  R G N  T +E           +  +A   LK  
Sbjct: 140 AKPKRKGINPFTKEEQVFAAKPATVRIKARALKKLKDA 177


>gi|229076719|ref|ZP_04209639.1| hypothetical protein bcere0024_54270 [Bacillus cereus Rock4-18]
 gi|228706381|gb|EEL58634.1| hypothetical protein bcere0024_54270 [Bacillus cereus Rock4-18]
          Length = 49

 Score = 43.7 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 53 TFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKAS 86
          T  V++   R G N +T + +KI P ++  FK S
Sbjct: 16 TSEVQELAERNGHNPKTGEAMKILPSKLPGFKIS 49


>gi|329965275|ref|ZP_08302205.1| DNA-binding protein HU [Bacteroides fluxus YIT 12057]
 gi|328523295|gb|EGF50395.1| DNA-binding protein HU [Bacteroides fluxus YIT 12057]
          Length = 160

 Score = 43.7 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 18/51 (35%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          T  D+   +++  G  R      +      I ++   G ++ +    +F  
Sbjct: 36 TERDVAHQVAQRTGFHRGVVEAVLAATGEIIEEALSEGHSVTLRGIGSFQT 86


>gi|325268756|ref|ZP_08135384.1| hypothetical protein HMPREF9141_0593 [Prevotella multiformis DSM
          16608]
 gi|324988924|gb|EGC20879.1| hypothetical protein HMPREF9141_0593 [Prevotella multiformis DSM
          16608]
          Length = 144

 Score = 43.7 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          +T  +L  +I +    SR D    V  L +EI      GE + +     FH+
Sbjct: 31 VTTEELADAIQENTSFSRGDVRGLVIALVDEISYRLREGETVVLEGLGRFHL 82


>gi|153809610|ref|ZP_01962278.1| hypothetical protein BACCAC_03928 [Bacteroides caccae ATCC 43185]
 gi|149127760|gb|EDM18985.1| hypothetical protein BACCAC_03928 [Bacteroides caccae ATCC 43185]
          Length = 173

 Score = 43.7 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 8/59 (13%), Positives = 25/59 (42%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           +T+    + + I+++  L+  D    +  L + + +  +    +++    TF +  K 
Sbjct: 29 GRTVNTQKMAELIAEKASLTAGDVHNVIRNLMSVMREQLLNSRTVRLEGLGTFTMVAKA 87


>gi|237713254|ref|ZP_04543735.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406605|ref|ZP_06083154.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647082|ref|ZP_06724691.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294807875|ref|ZP_06766657.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229446721|gb|EEO52512.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355308|gb|EEZ04399.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637579|gb|EFF55988.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294444937|gb|EFG13622.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 161

 Score = 43.7 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 16/109 (14%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF------HVKQKGSRV 63
           L   +++  G+ R      +  + + +      G ++K+  F +F        + K   V
Sbjct: 38  LCDEVNQRTGVHRAMVDVVLKGVQDTMVSFLEEGFSVKLGEFGSFRPAINAESQDKAEDV 97

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSG 112
             N      +    RR +VF      K+ +       +   D+VT+P+G
Sbjct: 98  SVN-----TII---RRKIVFTPGGAFKEML--GSASIELFGDNVTNPNG 136


>gi|29465850|gb|AAM97523.1| basic chromosomal protein HCC4 [Crypthecodinium cohnii]
          Length = 123

 Score = 43.7 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 4/93 (4%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            K +T++ L ++++    +S+KD    + +L         +   + I        ++K +
Sbjct: 28  GKAMTKTGLAEALANATEVSKKDCASIIESLATICATEVKKTGKLTIPGLVMVKTRKKPA 87

Query: 62  -RVGRNLQTNQEVKI---DPRRVVVFKASSILK 90
            + G+     + V +     + VV       LK
Sbjct: 88  TKAGKREMFGKVVLVKAQPAKTVVKAYPVKALK 120


>gi|33593070|ref|NP_880714.1| DNA-binding protein Bph2 [Bordetella pertussis Tohama I]
 gi|33596366|ref|NP_884009.1| DNA-binding protein Bph2 [Bordetella parapertussis 12822]
 gi|33563445|emb|CAE42326.1| DNA-binding protein Bph2 [Bordetella pertussis Tohama I]
 gi|33566135|emb|CAE37035.1| DNA-binding protein Bph2 [Bordetella parapertussis]
 gi|332382482|gb|AEE67329.1| DNA-binding protein Bph2 [Bordetella pertussis CS]
          Length = 105

 Score = 43.7 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 8/98 (8%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQ-- 58
           + + +S L+  + +  G+  K     +  L + +  S   +G     +       V++  
Sbjct: 6   EALNKSQLIAYLVENTGVEAKSVKAVLAGLESSVLASVDKKGAGEFTLPGLFKVAVQKVP 65

Query: 59  -KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92
            K  R G++  T +E           V  +    LK  
Sbjct: 66  AKAKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 103


>gi|212217925|ref|YP_002304712.1| DNA-binding protein [Coxiella burnetii CbuK_Q154]
 gi|212012187|gb|ACJ19567.1| bacterial DNA-binding protein [Coxiella burnetii CbuK_Q154]
          Length = 78

 Score = 43.7 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 26 TRFVTTLFNEICDSAVRG--EAIKISSFATFHVKQK---GSRVGRNLQTNQEVKI---DP 77
          +  +  L + +     +G      +       VK+K    +R G N  T + +       
Sbjct: 2  SAVLDELADVMHRHLRKGAAGEFTLPGLVKCTVKRKPATKARKGINPFTGEMMTFKAKPA 61

Query: 78 RRVVVFKASSILKK 91
          R VV  +A   LK+
Sbjct: 62 RNVVKVRALKRLKE 75


>gi|126729594|ref|ZP_01745407.1| DNA-binding protein HU, putative [Sagittula stellata E-37]
 gi|126709713|gb|EBA08766.1| DNA-binding protein HU, putative [Sagittula stellata E-37]
          Length = 164

 Score = 43.7 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQKGSRVG 64
           + +LV    +  G+ ++D+   +      + ++   G  + ++ F    V + K +  G
Sbjct: 80  KKELVDLAVERSGIKKRDAKPAIEAALAVLGEALSEGRELNLAPFGKMKVTRMKKAGNG 138


>gi|258648450|ref|ZP_05735919.1| putative DNA-binding protein [Prevotella tannerae ATCC 51259]
 gi|260851205|gb|EEX71074.1| putative DNA-binding protein [Prevotella tannerae ATCC 51259]
          Length = 197

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 20/55 (36%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55
          ++  +T +DL   +  E   S  D    V      I      G +++I    TF 
Sbjct: 26 VNNVLTLNDLAARVESETSFSVSDVKGLVEAFQKYIAVELSLGHSVRIDGLGTFS 80


>gi|285017827|ref|YP_003375538.1| bacterial DNA-binding protein [Xanthomonas albilineans GPE PC73]
 gi|283473045|emb|CBA15550.1| putative bacterial dna-binding protein [Xanthomonas albilineans]
          Length = 132

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISSFATF---HVKQK 59
           +++S LV  I++  G+  KD    +T+L + +  S  +    +  +          V  K
Sbjct: 35  LSKSALVAHIAETSGVIAKDVRAVMTSLEHAMAGSISKKGAGSFTLPGLLKITSTQVAAK 94

Query: 60  GSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92
             R G N  T +E           +  +    LK  
Sbjct: 95  AKRKGINPFTKEEQWFAAKPATTKLKVRPLKKLKDA 130


>gi|317405764|gb|EFV86055.1| histone family protein DNA-binding protein [Achromobacter
           xylosoxidans C54]
          Length = 152

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 8/96 (8%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQ---K 59
           + ++ L+  I ++ G+  K     + +L   +  S   +G     +       V++   K
Sbjct: 55  LNKTQLIAYIVEQSGVEAKSVKAVLASLETSVLSSVDKKGAGEFTLPGLFKVAVQKVPAK 114

Query: 60  GSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92
             R G++  T +E           V  +    LK  
Sbjct: 115 AKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 150


>gi|311107989|ref|YP_003980842.1| histone-like DNA-binding protein [Achromobacter xylosoxidans A8]
 gi|310762678|gb|ADP18127.1| histone-like DNA-binding protein [Achromobacter xylosoxidans A8]
          Length = 156

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 8/96 (8%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQ---K 59
           + ++ L+  I ++ G+  K     + +L   +  S   +G     +       V++   K
Sbjct: 59  LNKTQLIAYIVEQSGVEAKSVKAVLASLETSVLSSVDKKGAGEFTLPGLFKVAVQKVPAK 118

Query: 60  GSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92
             R G++  T +E           V  +    LK  
Sbjct: 119 AKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 154


>gi|260592134|ref|ZP_05857592.1| putative non-specific DNA binding protein [Prevotella veroralis
           F0319]
 gi|260535915|gb|EEX18532.1| putative non-specific DNA binding protein [Prevotella veroralis
           F0319]
          Length = 148

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG-RNL 67
           D+ K I+    L+R D    +T     +      G ++++  F T  ++   S  G  N 
Sbjct: 34  DIAKDIAGRSSLTRGDIENVLTNFMECLPSYLRDGFSVQLGEFGT--MRLTLSSTGAANE 91

Query: 68  QTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           ++ +   I PR  V F     LK  + D+
Sbjct: 92  KSFKTETIKPR--VTFTPGVELKAALRDN 118


>gi|187928584|ref|YP_001899071.1| histone family protein DNA-binding protein [Ralstonia pickettii
           12J]
 gi|241114161|ref|YP_002973636.1| histone family protein DNA-binding protein [Ralstonia pickettii
           12D]
 gi|187725474|gb|ACD26639.1| histone family protein DNA-binding protein [Ralstonia pickettii
           12J]
 gi|240868734|gb|ACS66392.1| histone family protein DNA-binding protein [Ralstonia pickettii
           12D]
          Length = 130

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 8/97 (8%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ----- 58
           T T++ LV  ++++  L  K     +  L N I  +  +  A + +    F V       
Sbjct: 32  TFTKASLVSHLAEQTELEAKAVKSVLLHLENTILSALHKKGAGEFTLPGLFKVVSVKVPA 91

Query: 59  KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92
              R G+N  T QE           V  +    +K  
Sbjct: 92  TKRRFGKNPFTGQEQWFEAKPASVRVKVRPLKKVKDA 128


>gi|1773080|gb|AAB40156.1| BpH2 [Bordetella pertussis 18323]
          Length = 145

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 8/98 (8%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQ-- 58
           + + +S L+  + +  G+  K     +  L + +  S   +G     +       V++  
Sbjct: 46  EALNKSQLIAYLVENTGVEAKSVKAVLAGLESSVLASVDKKGAGEFTLPGLFKVAVQKVP 105

Query: 59  -KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92
            K  R G++  T +E           V  +    LK  
Sbjct: 106 AKAKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 143


>gi|53713141|ref|YP_099133.1| putative non-specific DNA binding protein [Bacteroides fragilis
          YCH46]
 gi|60681406|ref|YP_211550.1| hypothetical protein BF1917 [Bacteroides fragilis NCTC 9343]
 gi|253566808|ref|ZP_04844260.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265763236|ref|ZP_06091804.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|11023526|gb|AAG26483.1|AF285774_23 unknown [Bacteroides fragilis]
 gi|52216006|dbj|BAD48599.1| putative non-specific DNA binding protein [Bacteroides fragilis
          YCH46]
 gi|60492840|emb|CAH07615.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
 gi|251944371|gb|EES84860.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263255844|gb|EEZ27190.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301162863|emb|CBW22410.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 157

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 25/57 (43%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          + K +T   L + I+++  L+  D    +  L   +    +   ++++    TF +K
Sbjct: 28 VGKMVTSQQLAEVIAEKSSLTPGDVHNVIRNLMTAMRKELLNSRSVRLEGLGTFTMK 84


>gi|300691926|ref|YP_003752921.1| histone-like bacterial DNA-binding protein [Ralstonia solanacearum
           PSI07]
 gi|299078986|emb|CBJ51646.2| putative histone-like bacterial DNA-binding protein [Ralstonia
           solanacearum PSI07]
          Length = 131

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 8/97 (8%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFA---TFHVKQ 58
           T T++ LV  ++++  L  K     +  L N I  +   +G     +       +  V  
Sbjct: 31  TFTKASLVNHLAEQAELDAKSVKAVLLHLENTILGALHKKGAGEFTLPGLFKVTSVKVPA 90

Query: 59  KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92
              R G+N  T QE           V  +    +K  
Sbjct: 91  TKRRFGKNPFTGQEQWFEAKPATVRVKVRPLKKVKDA 127


>gi|260591218|ref|ZP_05856676.1| putative DNA-binding protein [Prevotella veroralis F0319]
 gi|260537083|gb|EEX19700.1| putative DNA-binding protein [Prevotella veroralis F0319]
          Length = 139

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          +L  +I +    +R D    V  L +EI     +GE + +     FH+
Sbjct: 35 ELADAIQENTSFTRGDVRGLVIALIDEISYRLRQGETVVLDGLGRFHL 82


>gi|150008310|ref|YP_001303053.1| hypothetical protein BDI_1679 [Parabacteroides distasonis ATCC
           8503]
 gi|298375112|ref|ZP_06985069.1| DNA-binding protein [Bacteroides sp. 3_1_19]
 gi|149936734|gb|ABR43431.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
 gi|298267612|gb|EFI09268.1| DNA-binding protein [Bacteroides sp. 3_1_19]
          Length = 206

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 12/99 (12%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF--HVKQK 59
           +K +   D+ + IS+   ++  D    +  L + I      G ++++     F   VK K
Sbjct: 34  TKRMN--DICEYISECSSVTSADIKGVLEALTSYIGRELSYGYSVELEGLGHFSPSVKSK 91

Query: 60  G--SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
               + G N +++  +       V F+ S  LK+ +  +
Sbjct: 92  EVTDQKG-NTKSSASI-----HGVNFRCSPRLKEMVKKN 124


>gi|317476787|ref|ZP_07936030.1| hypothetical protein HMPREF1016_03014 [Bacteroides eggerthii
          1_2_48FAA]
 gi|316906962|gb|EFV28673.1| hypothetical protein HMPREF1016_03014 [Bacteroides eggerthii
          1_2_48FAA]
          Length = 160

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 25/55 (45%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          L +SI+++  L+  D    +  L + +    +    ++++   TF +K +    G
Sbjct: 37 LAESIAEKSSLTPGDVQNVIRNLMSTMRMHLLNSRTVRLNGLGTFTMKARTRGKG 91


>gi|218129998|ref|ZP_03458802.1| hypothetical protein BACEGG_01581 [Bacteroides eggerthii DSM
          20697]
 gi|217987801|gb|EEC54127.1| hypothetical protein BACEGG_01581 [Bacteroides eggerthii DSM
          20697]
          Length = 160

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 25/55 (45%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          L +SI+++  L+  D    +  L + +    +    ++++   TF +K +    G
Sbjct: 37 LAESIAEKSSLTPGDVQNVIRNLMSTMRMHLLNSRTVRLNGLGTFTMKARTRGKG 91


>gi|262384571|ref|ZP_06077705.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|301309182|ref|ZP_07215126.1| putative DNA-binding protein [Bacteroides sp. 20_3]
 gi|262293864|gb|EEY81798.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|300832864|gb|EFK63490.1| putative DNA-binding protein [Bacteroides sp. 20_3]
          Length = 206

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 12/99 (12%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF--HVKQK 59
           +K +   D+ + IS+   ++  D    +  L + I      G ++++     F   VK K
Sbjct: 34  TKRMN--DICEYISECSSVTSADIKGVLEALTSYIGRELSYGYSVELEGLGHFSPSVKSK 91

Query: 60  G--SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
               + G N +++  +       V F+ S  LK+ +  +
Sbjct: 92  EVTDQKG-NTKSSASI-----HGVNFRCSPRLKEMVKKN 124


>gi|255008633|ref|ZP_05280759.1| hypothetical protein Bfra3_05802 [Bacteroides fragilis 3_1_12]
 gi|313146368|ref|ZP_07808561.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135135|gb|EFR52495.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 159

 Score = 43.4 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 25/57 (43%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          + K +T   L + I+++  L+  D    +  L   +    +   ++++    TF +K
Sbjct: 28 VGKMVTSQQLAEVIAEKSSLTPGDVHNVIRNLMTAMRKELLNSRSVRLEGLGTFTMK 84


>gi|38637948|ref|NP_942922.1| histone-like protein [Ralstonia eutropha H16]
 gi|32527286|gb|AAP86036.1| histone-like protein [Ralstonia eutropha H16]
          Length = 147

 Score = 43.4 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 8/97 (8%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ----- 58
           T  +S L+  +  +  L +K     +T L N +  +  +  A + +    F V       
Sbjct: 49  TFNKSSLLAHLVAQTELDKKTVQTVLTHLENTMVSAIHKKGAGEFTFPGLFKVSAIQVPA 108

Query: 59  KGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92
              R G+N  T QE           V  +A   LK  
Sbjct: 109 TKKRFGKNPFTGQEQWFAAKPASVKVKVRAMKKLKDA 145


>gi|29345691|ref|NP_809194.1| putative DNA-binding protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253567678|ref|ZP_04845089.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29337584|gb|AAO75388.1| putative DNA-binding protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251841751|gb|EES69831.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 213

 Score = 43.4 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 1/88 (1%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+    L   I     L   D    +  L NE+    + G+ + +     F V      
Sbjct: 30  ETVNTEKLAYRIHDRSTLRVSDIISTLEELKNEVAQCLLEGKKVHVDGLGFFQVTLSCEE 89

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILK 90
             RN +  +  ++   + + FKA   LK
Sbjct: 90  EIRNPKDKRVHRVKL-KAIKFKADKELK 116


>gi|329954498|ref|ZP_08295589.1| putative DNA-binding protein [Bacteroides clarus YIT 12056]
 gi|328527466|gb|EGF54463.1| putative DNA-binding protein [Bacteroides clarus YIT 12056]
          Length = 162

 Score = 43.4 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 25/55 (45%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          L +SI+++  L+  D    +  L + +    +    ++++   TF +K +    G
Sbjct: 37 LAESIAEKSSLTPGDVQNVIRNLMSTMRMHLLNSRTVRLNGLGTFTMKARTRGKG 91


>gi|56550655|ref|YP_161721.1| hypothetical protein RMe0099 [Cupriavidus metallidurans CH34]
 gi|94152598|ref|YP_582000.1| histone-like DNA-binding protein [Cupriavidus metallidurans CH34]
 gi|56410361|emb|CAI30243.1| hypothetical protein RMe0099 [Cupriavidus metallidurans CH34]
 gi|93358964|gb|ABF13050.1| Histone-like DNA-binding protein [Cupriavidus metallidurans CH34]
          Length = 140

 Score = 43.4 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 8/97 (8%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ----- 58
           T  +S L+  +  +  L +K     +  L N I  +  +  A + +    F V       
Sbjct: 42  TFNKSSLLAHLVTQTELDKKTVQTVLAHLENTIASAIHKKGAGEFTFPGLFKVSAIQVPA 101

Query: 59  KGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92
              R GRN  T  +           V  +    LK  
Sbjct: 102 TKKRFGRNPFTGADQWFAAKPASVKVKVRPLKKLKDA 138


>gi|150003152|ref|YP_001297896.1| hypothetical protein BVU_0566 [Bacteroides vulgatus ATCC 8482]
 gi|149931576|gb|ABR38274.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
          Length = 212

 Score = 43.0 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 14/97 (14%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +TI   DL+   +    +SR D    V  L + + +    G+ I I+    F V      
Sbjct: 29  QTIHSKDLIHEATLYTSVSRSDWAAVVEGLIDILSEKLGDGKRIHINGLGYFSVS----- 83

Query: 63  VG----RNLQ--TNQEVKIDPRRVVVFKASSILKKRI 93
           +G     N +  T   V+I     V F+     KK I
Sbjct: 84  IGSTESENPKKMTRGTVQITG---VNFQPEKSFKKSI 117


>gi|254882436|ref|ZP_05255146.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294776442|ref|ZP_06741919.1| putative DNA-binding protein [Bacteroides vulgatus PC510]
 gi|254835229|gb|EET15538.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294449705|gb|EFG18228.1| putative DNA-binding protein [Bacteroides vulgatus PC510]
          Length = 212

 Score = 43.0 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 14/97 (14%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +TI   DL+   +    +SR D    V  L + + +    G+ I I+    F V      
Sbjct: 29  QTIHSKDLIHEATLYTSVSRSDWAAVVEGLIDILSEKLGDGKRIHINGLGYFSVS----- 83

Query: 63  VG----RNLQ--TNQEVKIDPRRVVVFKASSILKKRI 93
           +G     N +  T   V+I     V F+     KK I
Sbjct: 84  IGSTESENPKKMTRGTVQITG---VNFQPEKSFKKSI 117


>gi|237715759|ref|ZP_04546240.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262408767|ref|ZP_06085313.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645527|ref|ZP_06723223.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294806587|ref|ZP_06765423.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229444468|gb|EEO50259.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262353632|gb|EEZ02726.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292639101|gb|EFF57423.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294446202|gb|EFG14833.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 174

 Score = 43.0 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          +  +I  +  L+  D    +     ++  S  +G+ +KI    TFH+
Sbjct: 40 MATAIESKSSLTAGDVKHTIEAFVEQLRLSLTQGDKVKIDGLGTFHI 86


>gi|298384591|ref|ZP_06994151.1| DNA-binding protein [Bacteroides sp. 1_1_14]
 gi|298262870|gb|EFI05734.1| DNA-binding protein [Bacteroides sp. 1_1_14]
          Length = 213

 Score = 43.0 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 1/88 (1%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T+    L   I     L   D    +  L NE+    + G+ + +     F V      
Sbjct: 30  ETVNTEKLAYRIHDRSTLRVSDIISTLEELKNEVAQCLLEGKKVHVDGLGFFQVTLSCEE 89

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILK 90
             RN +  +  ++   + + FKA   LK
Sbjct: 90  EIRNPKDKRVHRVKL-KAIKFKADKELK 116


>gi|257469786|ref|ZP_05633878.1| hypothetical protein FulcA4_10622 [Fusobacterium ulcerans ATCC
          49185]
 gi|317064016|ref|ZP_07928501.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689692|gb|EFS26527.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 96

 Score = 43.0 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 27/69 (39%)

Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80
          S K+    +   ++ +  +    + +    +  F  ++  SR  +     +E    P+ V
Sbjct: 18 SHKEVKEKIDLFWDVLLKALEEDKKVVFKDWGVFEKREIKSRKIKVPMWEEERYTKPKEV 77

Query: 81 VVFKASSIL 89
          + F+A   L
Sbjct: 78 IKFRAGKGL 86


>gi|256839403|ref|ZP_05544912.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738333|gb|EEU51658.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 206

 Score = 43.0 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 12/99 (12%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF--HVKQK 59
           +K +   D+ + IS+   ++  D    +  L + I      G ++++     F   VK K
Sbjct: 34  TKRMN--DICEYISECSSVTSADIKGVLEALTSYIGRELSYGYSVELEGLGHFSPSVKSK 91

Query: 60  G--SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
               + G N +++  +       V F+ S  LK+ +  +
Sbjct: 92  EVTDQKG-NTKSSASI-----HGVNFRCSPRLKEMVKKN 124


>gi|282860345|ref|ZP_06269413.1| putative DNA-binding protein [Prevotella bivia JCVIHMP010]
 gi|282586843|gb|EFB92080.1| putative DNA-binding protein [Prevotella bivia JCVIHMP010]
          Length = 142

 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 20/48 (41%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          DL  +I +    +R D    V  L +EI      G+ + +     FH+
Sbjct: 35 DLADAIQESTSFTRGDVRGIVMALIDEIGFQLANGKTVALDGLGRFHL 82


>gi|281420480|ref|ZP_06251479.1| putative DNA-binding protein [Prevotella copri DSM 18205]
 gi|281405253|gb|EFB35933.1| putative DNA-binding protein [Prevotella copri DSM 18205]
          Length = 199

 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 6/97 (6%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T   L + I     L++ D    +  L + + +    G    I     F +        
Sbjct: 31  MTEKQLQEKIQNRCSLTKGDVAAVLAELHDLMVEEFSMGRRFYIPEIGYFSMSASLEMPE 90

Query: 65  RNLQ---TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
            N     T +EV+I     + F+    L + +  ++ 
Sbjct: 91  ENPDKKITGKEVRITG---INFRPEGKLMEEVQRNVH 124


>gi|255015370|ref|ZP_05287496.1| hypothetical protein B2_15783 [Bacteroides sp. 2_1_7]
 gi|262381970|ref|ZP_06075108.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262382208|ref|ZP_06075346.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|301310506|ref|ZP_07216445.1| putative DNA-binding protein [Bacteroides sp. 20_3]
 gi|262297147|gb|EEY85077.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262297385|gb|EEY85315.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|300832080|gb|EFK62711.1| putative DNA-binding protein [Bacteroides sp. 20_3]
          Length = 155

 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 22/50 (44%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53
          T++  D    I++E  L++ D    +      +  +  +G  +++  F T
Sbjct: 31 TLSTQDAADQIAEESSLTKGDVLNVLDRYQRYVIKNLQKGYKVELLGFGT 80


>gi|253584314|ref|ZP_04861512.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251834886|gb|EES63449.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 97

 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 38/93 (40%), Gaps = 1/93 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T  + +K       L S K++   +   ++ +  +      + + ++  F  K+   + 
Sbjct: 1  MTEVEFIKFYRDRNNLKSIKEAKEKIDLFWSALLKALDEDGKVILKNWGVFEKKEVKPKK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
             L+ N+   I+ +  + F+  + L+  +  D
Sbjct: 61 MMILKMNEIRLIEGKEKIRFRIGTGLRNLVNGD 93


>gi|157093131|gb|ABV22220.1| major basic nuclear protein [Karlodinium micrum]
          Length = 108

 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 6/96 (6%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           K +T+  L K+++ E GL +K  +  + +L +       +     I        + K + 
Sbjct: 14  KAMTKGALAKALATEHGLKQKACSDVLNSLASIATAEVKKAGIFSIPGLCRIKTRTKPAT 73

Query: 63  VG--RNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
               RN    +EVK+     R +V    ++ LKK+I
Sbjct: 74  KAGVRN-VFGKEVKVKAKPARTIVKGYCAAALKKQI 108


>gi|319640460|ref|ZP_07995182.1| hypothetical protein HMPREF9011_00779 [Bacteroides sp. 3_1_40A]
 gi|317387947|gb|EFV68804.1| hypothetical protein HMPREF9011_00779 [Bacteroides sp. 3_1_40A]
          Length = 204

 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 14/97 (14%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +TI   DL+   +    +SR D    V  L + + +    G+ I I+    F V      
Sbjct: 21  QTIHSKDLIHEATLYTSVSRSDWAAVVEGLIDILSEKLGDGKRIHINGLGYFSVS----- 75

Query: 63  VG----RNLQ--TNQEVKIDPRRVVVFKASSILKKRI 93
           +G     N +  T   V+I     V F+     KK I
Sbjct: 76  IGSTESENPKKMTRGTVQITG---VNFQPEKSFKKSI 109


>gi|293606886|ref|ZP_06689234.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292814738|gb|EFF73871.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 152

 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 8/96 (8%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQ---K 59
           + ++ LV  I ++ G+  K     + +L   +  S   +G     +       V++   K
Sbjct: 55  MNKTQLVAYIVEQSGVEAKAVKAVLASLETSVLGSVDKKGAGEFTLPGLFKVAVQKVPAK 114

Query: 60  GSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92
             R G++  T  E           V  +    LK  
Sbjct: 115 AKRFGKDPFTGVERWFPAKPASVKVKVRPLKKLKDA 150


>gi|302345862|ref|YP_003814215.1| putative DNA-binding protein [Prevotella melaninogenica ATCC
          25845]
 gi|302149209|gb|ADK95471.1| putative DNA-binding protein [Prevotella melaninogenica ATCC
          25845]
          Length = 144

 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          DL  SI +    SR D    V  L +EI     +GE + +     FH+
Sbjct: 35 DLADSIQENTSFSRGDVRGLVIALIDEISYRLRQGETVALEGLGRFHL 82


>gi|149913776|ref|ZP_01902308.1| hypothetical protein RAZWK3B_17273 [Roseobacter sp. AzwK-3b]
 gi|149812060|gb|EDM71891.1| hypothetical protein RAZWK3B_17273 [Roseobacter sp. AzwK-3b]
          Length = 166

 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 20/47 (42%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53
           + DL+  + +  GL +KD+   V  + + + +    G  + +     
Sbjct: 79  KKDLIDLVVERSGLKKKDAKPAVDAVIDVLAELIGEGRDLNLPPLGK 125


>gi|298483440|ref|ZP_07001617.1| DNA-binding protein [Bacteroides sp. D22]
 gi|298270388|gb|EFI11972.1| DNA-binding protein [Bacteroides sp. D22]
          Length = 174

 Score = 43.0 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          +  +I  +  L+  D    +     ++  S  +G+ +KI    TFH+
Sbjct: 40 MATAIESKSSLTAGDVKHTIEAFVEQLRLSLTQGDKVKIDGLGTFHI 86


>gi|295087051|emb|CBK68574.1| DNA-binding protein, histone-like, putative [Bacteroides
          xylanisolvens XB1A]
          Length = 174

 Score = 43.0 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          +  +I  +  L+  D    +     ++  S  +G+ +KI    TFH+
Sbjct: 40 MATAIESKSSLTAGDVKHTIEAFVEQLRLSLTQGDKVKIDGLGTFHI 86


>gi|288803209|ref|ZP_06408643.1| DNA-binding protein [Prevotella melaninogenica D18]
 gi|288334250|gb|EFC72691.1| DNA-binding protein [Prevotella melaninogenica D18]
          Length = 144

 Score = 43.0 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          DL  SI +    SR D    V  L +EI     +GE + +     FH+
Sbjct: 35 DLADSIQENTSFSRGDVRGLVIALIDEISYRLRQGETVALEGLGRFHL 82


>gi|189464657|ref|ZP_03013442.1| hypothetical protein BACINT_01000 [Bacteroides intestinalis DSM
           17393]
 gi|189436931|gb|EDV05916.1| hypothetical protein BACINT_01000 [Bacteroides intestinalis DSM
           17393]
          Length = 182

 Score = 43.0 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 20/46 (43%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
            + + I++   LS+ D+   +  L   +       E++ +  F TF
Sbjct: 56  QIAREIAEYSSLSKGDTKNTIDNLVRVMTTHLQSSESVTLDGFGTF 101


>gi|189467955|ref|ZP_03016740.1| hypothetical protein BACINT_04349 [Bacteroides intestinalis DSM
          17393]
 gi|189436219|gb|EDV05204.1| hypothetical protein BACINT_04349 [Bacteroides intestinalis DSM
          17393]
          Length = 160

 Score = 43.0 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 18/51 (35%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          T  D+   +++  G  R      +      I ++   G ++ +    +F  
Sbjct: 36 TERDVAHQVAQRTGFHRGVVEAVLAATGEIIEEALSDGHSVTLRGIGSFQT 86


>gi|257470886|ref|ZP_05634976.1| hypothetical protein FulcA4_16194 [Fusobacterium ulcerans ATCC
          49185]
 gi|317065088|ref|ZP_07929573.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690764|gb|EFS27599.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 96

 Score = 43.0 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 27/69 (39%)

Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80
          S K+    +   ++ +  +    + +    +  F  ++  SR  +      E   +P+ V
Sbjct: 18 SHKEVKEKIDLFWDALLKALEEDKKVVFKDWGVFEKRETKSRKIKMPMWKGERYTEPKEV 77

Query: 81 VVFKASSIL 89
          + F+A   L
Sbjct: 78 IKFRAGKGL 86


>gi|303236739|ref|ZP_07323318.1| putative DNA-binding protein [Prevotella disiens FB035-09AN]
 gi|302482907|gb|EFL45923.1| putative DNA-binding protein [Prevotella disiens FB035-09AN]
          Length = 141

 Score = 42.6 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          DL ++I +    +R + T  +  L +EI  S  +G  + +     FH+
Sbjct: 35 DLAEAIQENTSFTRGEVTGIIMALVDEISYSLSQGNTVVLDGLGRFHL 82


>gi|329955710|ref|ZP_08296618.1| putative DNA-binding protein [Bacteroides clarus YIT 12056]
 gi|328526113|gb|EGF53137.1| putative DNA-binding protein [Bacteroides clarus YIT 12056]
          Length = 162

 Score = 42.6 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53
          L  SI K   +++ D    +  L  EI  +   G+ +K++   T
Sbjct: 40 LAASIQKNCAMTKGDVKHVIEALVEEIQTNLANGDKVKLNQLGT 83


>gi|288802083|ref|ZP_06407524.1| putative non-specific DNA binding protein [Prevotella
          melaninogenica D18]
 gi|288335518|gb|EFC73952.1| putative non-specific DNA binding protein [Prevotella
          melaninogenica D18]
          Length = 157

 Score = 42.6 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 1  MSKT--ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          M+ T  ++ + +VK + K   +S  D    +  L  E+ ++   G  +++    +F +  
Sbjct: 24 MAPTTPMSLAQIVKRVEKRSTVSSADVKAVLDALQYEVMEALENGNTVRLGDLGSFRLTM 83

Query: 59 KGS 61
          K  
Sbjct: 84 KSQ 86


>gi|325269362|ref|ZP_08135979.1| hypothetical protein HMPREF9141_1189 [Prevotella multiformis DSM
           16608]
 gi|324988283|gb|EGC20249.1| hypothetical protein HMPREF9141_1189 [Prevotella multiformis DSM
           16608]
          Length = 202

 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 18/94 (19%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG-----SR- 62
            L + I +   L+R D    V+ L +EI    + G A+ +     F +  KG      R 
Sbjct: 34  QLGEEIQRATTLTRTDILGAVSALKDEIVLQLMSGNAVHLPGLGYFSIAVKGDLYEDPRS 93

Query: 63  ---VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
                +N +          R V F+  + +K+R+
Sbjct: 94  HHLRLQNPK---------VRTVKFRPDTEMKERL 118


>gi|224538051|ref|ZP_03678590.1| hypothetical protein BACCELL_02941 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224520341|gb|EEF89446.1| hypothetical protein BACCELL_02941 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 167

 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          L K I+   G S  D    +  L + I ++   GE++ I    +FH+
Sbjct: 40 LAKRIAHRTGRSEGDVKGILADLPHFIEEALKNGESVSIKGLGSFHI 86


>gi|225174921|ref|ZP_03728918.1| hypothetical protein DealDRAFT_0773 [Dethiobacter alkaliphilus
          AHT 1]
 gi|225169561|gb|EEG78358.1| hypothetical protein DealDRAFT_0773 [Dethiobacter alkaliphilus
          AHT 1]
          Length = 51

 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKI 48
          + + DL +SI+    +  KD+  F+TT    + DS   GE +++
Sbjct: 1  MIKIDLARSIADTMNIHTKDADTFLTTFTEIVADSLASGEFVRL 44


>gi|294674289|ref|YP_003574905.1| hypothetical protein PRU_1608 [Prevotella ruminicola 23]
 gi|294473342|gb|ADE82731.1| conserved hypothetical protein [Prevotella ruminicola 23]
          Length = 144

 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          L   + +   L + D    ++ L   + D     + +K++ F +F +  +G 
Sbjct: 6  LAAIMQRNCTLKKADIVAVISELIETMADQLQDSKRVKLNGFGSFKIGIRGE 57


>gi|260592294|ref|ZP_05857752.1| putative DNA-binding protein [Prevotella veroralis F0319]
 gi|260535744|gb|EEX18361.1| putative DNA-binding protein [Prevotella veroralis F0319]
          Length = 146

 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 4/105 (3%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           D+ K I+    L+R D    +T     +      G ++++  F T  +         N +
Sbjct: 33  DIAKDIAGRSSLTRGDIENVLTNFMECLPSYLRDGFSVQLGEFGTMRLTLSSEGAA-NEK 91

Query: 69  TNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           + +   I PR  V F  S  LK  + D+       K+ +T   GS
Sbjct: 92  SFKTETIKPR--VTFTPSVELKAGLRDNSY-ETVKKESLTPAPGS 133


>gi|254437027|ref|ZP_05050521.1| hypothetical protein OA307_1897 [Octadecabacter antarcticus 307]
 gi|198252473|gb|EDY76787.1| hypothetical protein OA307_1897 [Octadecabacter antarcticus 307]
          Length = 187

 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 19/47 (40%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53
           + + +  +  E GL +KD    V  +   +  + + GE + +     
Sbjct: 99  KPEFIDRVMAETGLKKKDVKPVVEAMLAVLGRALIAGEELIVPPLGK 145


>gi|158079356|ref|YP_001504169.1| putative integration host factor [Enterococcus phage phiEF24C]
 gi|157890200|dbj|BAF81328.1| putative integration host factor [Enterococcus phage phiEF24C]
          Length = 103

 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           KTI R+D+ ++IS   G   KD  + +      +  +  +G ++K       ++K+K  +
Sbjct: 5   KTINRTDIARTISHHTGYRMKDILKILEIEDEVVAQAVSQGISVKNHKLWKLNIKKKPEK 64

Query: 63  V---GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           V   G N   ++      + VV F   S LK+ I    +  K
Sbjct: 65  VAWDGIN---SKSFIQPEKYVVKFVPLSKLKESIDTYNKESK 103


>gi|33602348|ref|NP_889908.1| DNA-binding protein Bph2 [Bordetella bronchiseptica RB50]
 gi|33576787|emb|CAE33866.1| DNA-binding protein Bph2 [Bordetella bronchiseptica RB50]
          Length = 112

 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 8/98 (8%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQ-- 58
           + + +S L+  + +  G+  K     +  L + +  S   +G     +       V++  
Sbjct: 13  EALNKSQLIAYLVENTGVEAKSVKAVLAGLESSVLASVDKKGAGEFTLPGLFKVAVQKVP 72

Query: 59  -KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92
            K  R G++  T +E           V  +    LK  
Sbjct: 73  AKAKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 110


>gi|328947567|ref|YP_004364904.1| hypothetical protein Tresu_0666 [Treponema succinifaciens DSM 2489]
 gi|328447891|gb|AEB13607.1| hypothetical protein Tresu_0666 [Treponema succinifaciens DSM 2489]
          Length = 124

 Score = 42.6 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 14/98 (14%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV------KQKGSRV 63
           L K ISK   L+  D    + +  +++         I+++ F  F +       +K   V
Sbjct: 35  LAKEISKSCTLTPADIVAVIESFLDKMPQYLKSSNRIRLNKFGIFKLSFSSVGHEKAEDV 94

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
             N        I   RV+ F  S+ LKK + D    RK
Sbjct: 95  SSN-------DIKNLRVL-FTPSAELKKELSDVSYTRK 124


>gi|325925539|ref|ZP_08186927.1| putative DNA-binding protein [Xanthomonas perforans 91-118]
 gi|325544043|gb|EGD15438.1| putative DNA-binding protein [Xanthomonas perforans 91-118]
          Length = 141

 Score = 42.6 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 8/98 (8%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISS---FATFHVK 57
           + ++++ LV  I++   L+ KD    + +L      S  +    +  I       T HV 
Sbjct: 42  EALSKTGLVAHIAESTQLAPKDVRAVLASLEATAHASLSKKGVGSFTIPGMLKLTTVHVP 101

Query: 58  QKGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92
            K  R G N  T +E           +  +    LK  
Sbjct: 102 AKPKRKGINPFTKEEQMFAAKPATTKLKSRPLKKLKDA 139


>gi|212694667|ref|ZP_03302795.1| hypothetical protein BACDOR_04198 [Bacteroides dorei DSM 17855]
 gi|212663168|gb|EEB23742.1| hypothetical protein BACDOR_04198 [Bacteroides dorei DSM 17855]
          Length = 156

 Score = 42.6 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          ++   I K   ++R D    +  L + I ++   GE ++++   TF +
Sbjct: 52 EMADRIQKTCTVTRADVMAVLVALEDVIMEALEGGEIVRLADLGTFQI 99


>gi|29347431|ref|NP_810934.1| putative non-specific DNA-binding protein [Bacteroides
          thetaiotaomicron VPI-5482]
 gi|253570641|ref|ZP_04848049.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29339331|gb|AAO77128.1| conserved hypothetical protein, putative non-specific DNA-binding
          protein [Bacteroides thetaiotaomicron VPI-5482]
 gi|251839590|gb|EES67673.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 175

 Score = 42.2 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 26/63 (41%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          SK +    + + I+++  L+  D    +  L + + +  +    +++    TF +  K  
Sbjct: 29 SKMVNTQKMAELIAEKASLTPGDVHNVIRNLMSVMREQLLNSRTVRLEGLGTFTMIAKAG 88

Query: 62 RVG 64
            G
Sbjct: 89 GKG 91


>gi|255026107|ref|ZP_05298093.1| non-specific DNA-binding protein HU [Listeria monocytogenes FSL
          J2-003]
          Length = 40

 Score = 42.2 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG 43
           ++DLV S+++   LS+K + + V  +F  I  S  +G
Sbjct: 3  NKTDLVNSVAELADLSKKXAAKAVEAVFETIQTSLSKG 40


>gi|298385111|ref|ZP_06994670.1| non-specific DNA binding protein [Bacteroides sp. 1_1_14]
 gi|298262255|gb|EFI05120.1| non-specific DNA binding protein [Bacteroides sp. 1_1_14]
          Length = 175

 Score = 42.2 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 26/63 (41%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          SK +    + + I+++  L+  D    +  L + + +  +    +++    TF +  K  
Sbjct: 29 SKMVNTQKMAELIAEKASLTPGDVHNVIRNLMSVMREQLLNSRTVRLEGLGTFTMIAKAG 88

Query: 62 RVG 64
            G
Sbjct: 89 GKG 91


>gi|294777315|ref|ZP_06742768.1| putative DNA-binding protein [Bacteroides vulgatus PC510]
 gi|294448844|gb|EFG17391.1| putative DNA-binding protein [Bacteroides vulgatus PC510]
          Length = 142

 Score = 42.2 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          ++   I K   ++R D    +  L + I ++   GE ++++   TF +
Sbjct: 38 EMADRIQKTCTVTRADVMAVLVALEDVIMEALEGGEIVRLADLGTFQI 85


>gi|150005202|ref|YP_001299946.1| hypothetical protein BVU_2672 [Bacteroides vulgatus ATCC 8482]
 gi|319642715|ref|ZP_07997359.1| hypothetical protein HMPREF9011_02959 [Bacteroides sp. 3_1_40A]
 gi|149933626|gb|ABR40324.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
 gi|317385650|gb|EFV66585.1| hypothetical protein HMPREF9011_02959 [Bacteroides sp. 3_1_40A]
          Length = 142

 Score = 42.2 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          ++   I K   ++R D    +  L + I ++   GE ++++   TF +
Sbjct: 38 EMADRIQKTCTVTRADVMAVLVALEDVIMEALEGGEIVRLADLGTFQI 85


>gi|270297143|ref|ZP_06203331.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270272494|gb|EFA18368.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 189

 Score = 42.2 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 8   SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
            + ++ + +E  +        V  +   + D   +G  ++I     F    K +    N 
Sbjct: 34  KEFMERVFREEHMPHAMVVGIVQAITTTLGDWLAKGYTVEIEGLGFFSTTLKCTHPVMN- 92

Query: 68  QTNQEVKIDPRR--VVVFKASSILKKRIMDDMRGRKCNK 104
              +EV+ +  +   V F+     K+ +   M   + +K
Sbjct: 93  --KKEVRAESVKMSTVKFRPGIEFKRYVAGKMELERADK 129


>gi|255691289|ref|ZP_05414964.1| putative non-specific DNA binding protein [Bacteroides finegoldii
          DSM 17565]
 gi|260623204|gb|EEX46075.1| putative non-specific DNA binding protein [Bacteroides finegoldii
          DSM 17565]
          Length = 172

 Score = 42.2 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 26/63 (41%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           K +    + + I+++  L+  D    +  L + + +  +    +++    TF +  K +
Sbjct: 29 GKAVNTQKMAELIAEKASLTAGDVHNVIRNLMSVMREQLLNSRTVRLEGLGTFTMIAKAN 88

Query: 62 RVG 64
            G
Sbjct: 89 GKG 91


>gi|253583928|ref|ZP_04861126.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251834500|gb|EES63063.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 101

 Score = 42.2 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 10/97 (10%), Positives = 34/97 (35%), Gaps = 1/97 (1%)

Query: 1  MSKTITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          M + +   + ++       L + K++ + +   +  +  +      + +  +  F  K+ 
Sbjct: 1  MGEVMKEGEFIRFYRDRNCLRNIKEAKKKIDLFWTVVLKALDEDGKVLLKDWGVFEKKEV 60

Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
            R     +  +E        ++F+  + LK  +   
Sbjct: 61 APRKIMTPRMEKERVTKAGEKIIFRTGTGLKTLVNGA 97


>gi|187478977|ref|YP_787001.1| DNA-binding protein [Bordetella avium 197N]
 gi|115423563|emb|CAJ50099.1| DNA-binding protein [Bordetella avium 197N]
          Length = 105

 Score = 42.2 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 8/98 (8%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK----- 57
           + + +S LV  + +  G+  K     +  L + +  S  +  A + +    F V      
Sbjct: 6   EALNKSQLVAHLVENTGVEAKTVKTVLAGLESAVLGSVDKKGAGEFTLAGLFKVSVQKVP 65

Query: 58  QKGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92
            K  R G++  T +E           V  +    LK  
Sbjct: 66  AKAKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 103


>gi|237711062|ref|ZP_04541543.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237727423|ref|ZP_04557904.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265750650|ref|ZP_06086713.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229434279|gb|EEO44356.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229454906|gb|EEO60627.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263237546|gb|EEZ22996.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 142

 Score = 42.2 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          ++   I K   ++R D    +  L + I ++   GE ++++   TF +
Sbjct: 38 EMADRIQKTCTVTRADVMAVLVALEDVIMEALEGGEIVRLADLGTFQI 85


>gi|254885034|ref|ZP_05257744.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837827|gb|EET18136.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 142

 Score = 42.2 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          ++   I K   ++R D    +  L + I ++   GE ++++   TF +
Sbjct: 38 EMADRIQKTCTVTRADVMAVLVALEDVIMEALEGGEIVRLADLGTFQI 85


>gi|270294809|ref|ZP_06201010.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274056|gb|EFA19917.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 207

 Score = 42.2 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 38/91 (41%), Gaps = 11/91 (12%)

Query: 8   SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF-----HVKQKGSR 62
           ++L + I +   L++ D +  +  L + + +    G  + +     F       +   + 
Sbjct: 36  AELRRRIQERCSLTKTDVSAVLDALSHVMGEDLAEGRQVHLDGIGYFHPVLTSTEPVTAA 95

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
             R  +T  ++K+   + + F+A  +LK  I
Sbjct: 96  TKR--KT-TKIKL---KGIKFRADQVLKNEI 120


>gi|257470064|ref|ZP_05634156.1| hypothetical protein FulcA4_12035 [Fusobacterium ulcerans ATCC
          49185]
 gi|317064288|ref|ZP_07928773.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689964|gb|EFS26799.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 95

 Score = 42.2 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 38/95 (40%), Gaps = 1/95 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T ++ ++   K+  L + K+    + T +  I  +      +    +  F  ++ G+R 
Sbjct: 1  MTETEFIRFYKKKIKLRNVKEVQERIDTFWKTIFKALEIDGKVTFKDWGVFEKRKHGARR 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
                  +   + + V+ F+A    + +I  + R
Sbjct: 61 YILASLGIDNMTENKEVIKFRAGKGFENKINKEKR 95


>gi|237721180|ref|ZP_04551661.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229450015|gb|EEO55806.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 166

 Score = 42.2 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L  S+ ++  LS  D    +T L   +  +   G+++ I  F  F +        R ++T
Sbjct: 38  LAYSMKEKSSLSLGDIQSVLTNLVEAMRAALFDGKSVNIRDFGVFSLSA----TTRGVET 93

Query: 70  NQEVKIDPRRVV--VFKASSILKKRIMDDMRGRKCNKDDVTSP 110
            +E  +   + V   F+ SS ++  +     G K    D+ +P
Sbjct: 94  KEECTMKNIKSVNINFRPSSSVRPNLTSTRAGEKIEFLDLDAP 136


>gi|253572295|ref|ZP_04849698.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838070|gb|EES66158.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 205

 Score = 42.2 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 41/105 (39%), Gaps = 5/105 (4%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
           + D ++ +S+            +  + +E+ ++   G  +++     F +  K +     
Sbjct: 34  KKDFIERVSRHQPFPHNIIEGVLGAVVDELAEALADGYIVELGELGHFSISLKCTHKVM- 92

Query: 67  LQTNQEVKIDPRR--VVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
             T +E++ +  R   V  + S   KK+I  ++   +     V +
Sbjct: 93  --TKKEIRAESIRFDNVHLRTSKEFKKKIKREIELERVENSKVKT 135


>gi|299148107|ref|ZP_07041170.1| putative DNA-binding protein [Bacteroides sp. 3_1_23]
 gi|298514290|gb|EFI38176.1| putative DNA-binding protein [Bacteroides sp. 3_1_23]
          Length = 208

 Score = 42.2 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH----VKQKGSRVG 64
          DL++ I+   G +  D    +T +  E+      G+++K+    TF     + +   R  
Sbjct: 34 DLIRQIASSSGFNVGDVEGVITQIGIEMAHQMAEGKSVKLDGIGTFSPSLALCKDKERE- 92

Query: 65 RNLQTNQ 71
             +T +
Sbjct: 93 ---KTGE 96


>gi|293370595|ref|ZP_06617147.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|292634329|gb|EFF52866.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|295086407|emb|CBK67930.1| DNA-binding protein, histone-like, putative [Bacteroides
          xylanisolvens XB1A]
          Length = 165

 Score = 42.2 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 18/49 (36%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
           +L   ++K  G  R      ++ L   I D    G ++ I    TF  
Sbjct: 38 KELAVRMAKTTGFHRGQIEGILSELVESIQDLLSSGHSVTIEGLGTFQT 86


>gi|114565593|ref|YP_752747.1| hypothetical protein Swol_0017 [Syntrophomonas wolfei subsp.
          wolfei str. Goettingen]
 gi|114336528|gb|ABI67376.1| hypothetical protein Swol_0017 [Syntrophomonas wolfei subsp.
          wolfei str. Goettingen]
          Length = 152

 Score = 42.2 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 4  TITRSDLVKSISKEF--GLSRKDSTRFVTTLFNEICDSAVR 42
          ++ + DL ++I+ +    +++K++  F+T   + I ++  +
Sbjct: 45 SMIKIDLARAIADKVLPQITQKEADAFLTAFMDIIGEALKK 85


>gi|260172256|ref|ZP_05758668.1| hypothetical protein BacD2_10362 [Bacteroides sp. D2]
 gi|315920562|ref|ZP_07916802.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694437|gb|EFS31272.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 165

 Score = 42.2 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 18/49 (36%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
           +L   ++K  G  R      ++ L   I D    G ++ I    TF  
Sbjct: 38 KELAVRMAKTTGFHRGQIEGILSELVESIQDLLSSGHSVTIEGLGTFQT 86


>gi|237707889|ref|ZP_04538370.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237723439|ref|ZP_04553920.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229438189|gb|EEO48266.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229458095|gb|EEO63816.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 212

 Score = 42.2 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 14/102 (13%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +TI   DL+   +    +SR D    V  L + + +    G+ I I+    F V      
Sbjct: 29  QTIHSKDLIHETTLYTSVSRSDWAAVVEGLIDILSEKLGDGKRIHINGLGYFSVS----- 83

Query: 63  VG----RNLQ--TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           +G     N +  T   V+I     + F+     KK I++   
Sbjct: 84  IGSTESENPKKMTRGTVQITG---INFQPEKSFKKSIINRAH 122


>gi|212691703|ref|ZP_03299831.1| hypothetical protein BACDOR_01198 [Bacteroides dorei DSM 17855]
 gi|265758290|ref|ZP_06090972.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212665743|gb|EEB26315.1| hypothetical protein BACDOR_01198 [Bacteroides dorei DSM 17855]
 gi|263233432|gb|EEZ19083.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 212

 Score = 42.2 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 14/102 (13%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +TI   DL+   +    +SR D    V  L + + +    G+ I I+    F V      
Sbjct: 29  QTIHSKDLIHETTLYTSVSRSDWAAVVEGLIDILSEKLGDGKRIHINGLGYFSVS----- 83

Query: 63  VG----RNLQ--TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           +G     N +  T   V+I     + F+     KK I++   
Sbjct: 84  IGSTESENPKKMTRGTVQITG---INFQPEKSFKKSIINRAH 122


>gi|224538096|ref|ZP_03678635.1| hypothetical protein BACCELL_02986 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224520307|gb|EEF89412.1| hypothetical protein BACCELL_02986 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 169

 Score = 42.2 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 22/47 (46%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          L + +++  G+   D    +  L   I ++   GE++ I    +F++
Sbjct: 40 LAQRMARRKGMGEGDVQSVLVDLPKYIEEALSEGESVTIRGLGSFNL 86


>gi|317478851|ref|ZP_07938002.1| hypothetical protein HMPREF1007_01118 [Bacteroides sp. 4_1_36]
 gi|316905027|gb|EFV26830.1| hypothetical protein HMPREF1007_01118 [Bacteroides sp. 4_1_36]
          Length = 166

 Score = 42.2 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 22/56 (39%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           L + I+++  L+  D    +  L   +    +    +++    TF +K +    G
Sbjct: 36 QLAEVIAEKSSLTPGDVHNVIRNLMTVMRSQLLNSRTVRLDGLGTFTMKARTRGKG 91


>gi|255015464|ref|ZP_05287590.1| hypothetical protein B2_16263 [Bacteroides sp. 2_1_7]
          Length = 170

 Score = 42.2 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 12/96 (12%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF--HVKQKG-- 60
          +   D+ + IS+   ++  D    +  L + I      G ++++     F   VK K   
Sbjct: 1  MN--DICEYISECSSVTSADIKGVLEALTSYIGRELSYGYSVELEGLGHFSPSVKSKEVT 58

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           + G N +++  +       V F+ S  LK+ +  +
Sbjct: 59 DQKG-NTKSSASI-----HGVNFRCSPRLKEMVKKN 88


>gi|160888332|ref|ZP_02069335.1| hypothetical protein BACUNI_00745 [Bacteroides uniformis ATCC 8492]
 gi|317477690|ref|ZP_07936885.1| hypothetical protein HMPREF1007_00001 [Bacteroides sp. 4_1_36]
 gi|156862009|gb|EDO55440.1| hypothetical protein BACUNI_00745 [Bacteroides uniformis ATCC 8492]
 gi|316906147|gb|EFV27906.1| hypothetical protein HMPREF1007_00001 [Bacteroides sp. 4_1_36]
          Length = 202

 Score = 42.2 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 8   SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
            + ++ + +E  +        V  +   + D   +G  ++I     F    K +    N 
Sbjct: 34  KEFMERVFREEHMPHAMVVGIVQAITTTLGDWLAKGYTVEIEGLGFFSTTLKCTHPVMN- 92

Query: 68  QTNQEVKIDPRR--VVVFKASSILKKRIMDDMRGRKCNK 104
              +EV+ +  +   V F+     K+ +   M   + +K
Sbjct: 93  --KKEVRAESVKMSTVKFRPGIEFKRYVAGKMELERADK 129


>gi|160889840|ref|ZP_02070843.1| hypothetical protein BACUNI_02271 [Bacteroides uniformis ATCC
          8492]
 gi|156860832|gb|EDO54263.1| hypothetical protein BACUNI_02271 [Bacteroides uniformis ATCC
          8492]
          Length = 166

 Score = 42.2 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 22/56 (39%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           L + I+++  L+  D    +  L   +    +    +++    TF +K +    G
Sbjct: 36 QLAEVIAEKSSLTPGDVHNVIRNLMTVMRSQLLNSRTVRLDGLGTFTMKARTRGKG 91


>gi|88597555|ref|ZP_01100789.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88190147|gb|EAQ94122.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 84-25]
          Length = 42

 Score = 42.2 bits (99), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           +R  R   T + +K+   RV  FK    LK+ +      +K
Sbjct: 1   AREARVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKK 41


>gi|294675404|ref|YP_003576020.1| DNA-binding protein [Prevotella ruminicola 23]
 gi|294472962|gb|ADE82351.1| putative DNA-binding protein [Prevotella ruminicola 23]
          Length = 174

 Score = 42.2 bits (99), Expect = 0.027,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          L   + +   L + D    ++ L   + D     + +K++ F +F +  +G 
Sbjct: 36 LATIMQRNCTLKKADIVAVISELIETMADQLQDSKRVKLNGFGSFKIGIRGE 87


>gi|160883483|ref|ZP_02064486.1| hypothetical protein BACOVA_01452 [Bacteroides ovatus ATCC 8483]
 gi|237720259|ref|ZP_04550740.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|293369885|ref|ZP_06616458.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|156111203|gb|EDO12948.1| hypothetical protein BACOVA_01452 [Bacteroides ovatus ATCC 8483]
 gi|229450811|gb|EEO56602.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292635062|gb|EFF53581.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
          Length = 208

 Score = 42.2 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH----VKQKGSRVG 64
          DL++ I+   G +  D    +T +  E+      G+++K+    TF     + +   R  
Sbjct: 34 DLIRQIASSSGFNVGDVEGVITQIGIEMAHQMAEGKSVKLDGIGTFSPSLALCKDKERE- 92

Query: 65 RNLQTNQ 71
             +T +
Sbjct: 93 ---KTGE 96


>gi|257470163|ref|ZP_05634255.1| hypothetical protein FulcA4_12552 [Fusobacterium ulcerans ATCC
          49185]
 gi|317064382|ref|ZP_07928867.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690058|gb|EFS26893.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 96

 Score = 41.8 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 5  ITRSDLVKSISKEFGLSR--KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T  + V    K+   S+  K+  + +   ++ +  +    + +    +  F  K+  SR
Sbjct: 1  MTEGEFV-RFYKKRNKSKSHKEVKKKIDLFWDVLLKALDEEKKVVFKYWGVFEEKEVKSR 59

Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSIL 89
                  +    +P++V+ F+A   L
Sbjct: 60 KVLVPIWKEARYTEPKKVIKFRAGKRL 86


>gi|317479093|ref|ZP_07938234.1| hypothetical protein HMPREF1007_01350 [Bacteroides sp. 4_1_36]
 gi|316904749|gb|EFV26562.1| hypothetical protein HMPREF1007_01350 [Bacteroides sp. 4_1_36]
          Length = 169

 Score = 41.8 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 44/108 (40%), Gaps = 16/108 (14%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR------ 62
           D+   + ++  L+  D    +T     +  +   G+++ I +F  F +  + +       
Sbjct: 37  DIAYVMKEKSSLTLGDIQSVLTNFVEAMITTLYSGQSVNIKNFGVFSLSARTAGVLDVKE 96

Query: 63  -VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
              +N++    VKI       F+ SS ++  I     G+K +  D+ +
Sbjct: 97  CTAKNIK---AVKI------NFRPSSTVRPDIAATRAGQKIDFYDLEA 135


>gi|327313337|ref|YP_004328774.1| putative DNA-binding protein [Prevotella denticola F0289]
 gi|326944528|gb|AEA20413.1| putative DNA-binding protein [Prevotella denticola F0289]
          Length = 202

 Score = 41.8 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 18/107 (16%)

Query: 12  KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG-----SR---- 62
           + I     L+  D    V  L +E+    + G A+ +     F +  KG      R    
Sbjct: 37  EEIEHSTSLTHADLLGAVRALNDEVAHQLMAGNAVHLPGLGYFSLAVKGDIYEDPRSHHY 96

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
              N     EV     R V F+  + +K+R+          +  V+S
Sbjct: 97  RLHNP----EV-----RTVKFRPDAEMKERLRSTEFNNITYEQGVSS 134


>gi|325855016|ref|ZP_08171732.1| putative DNA-binding protein [Prevotella denticola CRIS 18C-A]
 gi|325483994|gb|EGC86934.1| putative DNA-binding protein [Prevotella denticola CRIS 18C-A]
          Length = 202

 Score = 41.8 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 18/107 (16%)

Query: 12  KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG-----SR---- 62
           + I     L+  D    V  L +E+    + G A+ +     F +  KG      R    
Sbjct: 37  EEIEHSTSLTHADLLGAVRALNDEVAHQLMSGNAVHLPGLGYFSLAVKGDIYEDPRSHHY 96

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
              N     EV     R V F+  + +K+R+          +  V+S
Sbjct: 97  RLHNP----EV-----RTVKFRPDAEMKERLRSTEFNNITYEQGVSS 134


>gi|189426723|ref|YP_001953899.1| hypothetical protein Glov_3680 [Geobacter lovleyi SZ]
 gi|189422982|gb|ACD97379.1| hypothetical protein Glov_3680 [Geobacter lovleyi SZ]
          Length = 97

 Score = 41.8 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 40/91 (43%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           +T+  L + ++    +  K + + +T L + I    + G  + I  F       K   +
Sbjct: 2  ALTKIKLARILAANLKIHEKVALQHITDLMDLIKMQLIEGNEVAIVGFGILKPAYKLLFI 61

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
            +L+  + V +  R+++ F AS  +KK + 
Sbjct: 62 TASLEPFEPVSVQRRKIISFTASLSIKKALN 92


>gi|270294098|ref|ZP_06200300.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275565|gb|EFA21425.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 166

 Score = 41.8 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 22/56 (39%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           L + I+++  L+  D    +  L   +    +    +++    TF +K +    G
Sbjct: 36 QLAEVIAEKSSLTPGDVHNVIRNLMTVMRSQLLNSRTVRLDGLGTFTMKARTRGKG 91


>gi|29346834|ref|NP_810337.1| hypothetical protein BT_1424 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29338731|gb|AAO76531.1| Histone-like bacterial DNA-binding protein [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 205

 Score = 41.8 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 38/94 (40%), Gaps = 5/94 (5%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
           + D ++ +S+            +  + +E+ ++   G  +++     F +  K +     
Sbjct: 34  KKDFIERVSRHQPFPHNIIEGVLGAVVDELAEALADGYIVELGELGHFSISLKCTHKVM- 92

Query: 67  LQTNQEVKIDPRR--VVVFKASSILKKRIMDDMR 98
             T +E++ +  R   V  + S   KK+I  ++ 
Sbjct: 93  --TKKEIRAESIRFDNVHLRTSKEFKKKIKREIE 124


>gi|193890995|gb|ACF28651.1| basic nuclear protein [Amphidinium carterae]
          Length = 90

 Score = 41.8 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK---GSRVGRNLQ 68
          K+++++  L  KD      +L     +   +  + K++      +  K    +R G N  
Sbjct: 2  KTVAEKMELKPKDVKGIXQSLLELSTEQVKKSGSFKLAGMLNMKLISKPATKARKGLNPF 61

Query: 69 TNQEVKI---DPRRVVVFKASSILKKRIM 94
          T +          + V   A   LK+ + 
Sbjct: 62 TKEPCVFKAKPASKSVKVLALKKLKEALN 90


>gi|157093133|gb|ABV22221.1| major basic nuclear protein [Karlodinium micrum]
          Length = 108

 Score = 41.8 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 6/96 (6%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           K +T+  L K+++ E GL +K  +  + +L +       +     I        + K + 
Sbjct: 14  KAMTKGALAKALATEHGLKQKACSDVLNSLASIATAEVKKTGIFSIPGLCRIKTRTKPAT 73

Query: 63  VG--RNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
               RN    +EVK+     + +V    ++ LKK+I
Sbjct: 74  KAGVRN-VFGKEVKVKAKPAKTIVKGYCAAALKKQI 108


>gi|37542893|gb|AAL61528.1| major basic nuclear protein [Karlodinium micrum]
          Length = 108

 Score = 41.8 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 6/96 (6%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           K +T+  L K+++ E GL +K  +  + +L +       +     I        + K + 
Sbjct: 14  KAMTKGALAKALATEHGLKQKACSDMLNSLASIATKEVKKAGIFSIPGLCRIKTRTKPAT 73

Query: 63  VG--RNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
               RN    ++VK+     R +V    ++ LKK+I
Sbjct: 74  KAGVRN-VFGKDVKVKAKPARTIVKGYCAAALKKQI 108


>gi|325281906|ref|YP_004254448.1| histone family protein DNA-binding protein [Odoribacter
          splanchnicus DSM 20712]
 gi|324313715|gb|ADY34268.1| histone family protein DNA-binding protein [Odoribacter
          splanchnicus DSM 20712]
          Length = 119

 Score = 41.8 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +T + +VK I K   +S  D    +  L  E+ ++   G  +++    +FH+  K  
Sbjct: 13 VTLAQIVKRIEKRSTVSSADVKAVLDALQYEVIEALENGNTVRLGDIGSFHLTIKAE 69


>gi|298386519|ref|ZP_06996075.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
 gi|298260896|gb|EFI03764.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
          Length = 205

 Score = 41.8 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 41/105 (39%), Gaps = 5/105 (4%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
           + D ++ +S+            +  + +E+ ++   G  +++     F +  K +     
Sbjct: 34  KKDFIERVSRHQPFPHNIIEGVLGAVVDELAEALADGYIVELGELGHFSISLKCTHKVM- 92

Query: 67  LQTNQEVKIDPRR--VVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
             T +E++ +  R   V  + S   KK+I  ++   +     V +
Sbjct: 93  --TKKEIRAESIRFDNVHLRTSKEFKKKIKREIELERVENSKVKT 135


>gi|94314477|ref|YP_587686.1| histone-like DNA-binding protein [Cupriavidus metallidurans CH34]
 gi|93358329|gb|ABF12417.1| histone-like DNA-binding protein [Cupriavidus metallidurans CH34]
          Length = 140

 Score = 41.8 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 8/97 (8%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ----- 58
           T  +S L+  +  +  L +K     +  L N I  +  +  A + +    F V       
Sbjct: 42  TFNKSSLLAHLVAQTELDKKTVQTVLVHLENTIVSAIHKKGAGEFTLPGLFKVAAIQVPA 101

Query: 59  KGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92
              R G+N  T Q+           V  +    LK  
Sbjct: 102 TKKRFGKNPFTGQDQWFAAKPASVKVKVRPLKKLKDA 138


>gi|160882963|ref|ZP_02063966.1| hypothetical protein BACOVA_00925 [Bacteroides ovatus ATCC 8483]
 gi|293370900|ref|ZP_06617444.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|156111646|gb|EDO13391.1| hypothetical protein BACOVA_00925 [Bacteroides ovatus ATCC 8483]
 gi|292634009|gb|EFF52554.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
          Length = 207

 Score = 41.8 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L++ ++K  G         +  L +++      G  +++  F  F  K K SR+  N + 
Sbjct: 37  LIRGVAKRTGFKEGVIEGILMELKDDVLQYLGEGYRVELGEFGFFSAKVKASRLVAN-KN 95

Query: 70  NQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           +   +      V F+AS  ++  I  D+  RKC
Sbjct: 96  DIRSESVAFNGVNFRASKSMRVGIRGDLERRKC 128


>gi|329963272|ref|ZP_08300985.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
 gi|328528811|gb|EGF55755.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
          Length = 160

 Score = 41.8 bits (98), Expect = 0.032,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 8/72 (11%)

Query: 11  VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTN 70
            + IS+   L++ D+   +  L   +       E++ +    TF +  K         T 
Sbjct: 37  AQEISEYSSLTKGDTKNTLDNLVRVMTTHLHASESVTLDGLGTFRLVMKS--------TG 88

Query: 71  QEVKIDPRRVVV 82
           + V+   +    
Sbjct: 89  KGVESAAKVSPA 100


>gi|260172609|ref|ZP_05759021.1| hypothetical protein BacD2_12151 [Bacteroides sp. D2]
 gi|315920899|ref|ZP_07917139.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694774|gb|EFS31609.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 207

 Score = 41.8 bits (98), Expect = 0.032,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L++ ++K  G         +  L +++      G  +++  F  F  K K SR+  N + 
Sbjct: 37  LIRGVAKRTGFKEGVIEGILMELKDDVLQYLGEGYRVELGEFGFFSAKVKASRLVAN-KN 95

Query: 70  NQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           +   +      V F+AS  ++  I  D+  RKC
Sbjct: 96  DIRSESVAFNGVNFRASKSMRVGIRGDLERRKC 128


>gi|299146941|ref|ZP_07040008.1| putative DNA-binding protein [Bacteroides sp. 3_1_23]
 gi|298514826|gb|EFI38708.1| putative DNA-binding protein [Bacteroides sp. 3_1_23]
          Length = 207

 Score = 41.8 bits (98), Expect = 0.032,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L++ ++K  G         +  L +++      G  +++  F  F  K K SR+  N + 
Sbjct: 37  LIRGVAKRTGFKEGVIEGILMELKDDVLQYLGEGYRVELGEFGFFSAKVKASRLVAN-KN 95

Query: 70  NQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           +   +      V F+AS  ++  I  D+  RKC
Sbjct: 96  DIRSESVAFNGVNFRASKSMRVGIRGDLERRKC 128


>gi|160890372|ref|ZP_02071375.1| hypothetical protein BACUNI_02813 [Bacteroides uniformis ATCC 8492]
 gi|270296931|ref|ZP_06203130.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156860104|gb|EDO53535.1| hypothetical protein BACUNI_02813 [Bacteroides uniformis ATCC 8492]
 gi|270272918|gb|EFA18781.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 169

 Score = 41.8 bits (98), Expect = 0.032,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 44/108 (40%), Gaps = 16/108 (14%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR------ 62
           D+   + ++  L+  D    +T     +  +   G+++ I +F  F +  + +       
Sbjct: 37  DIAYVMKEKSSLTLGDIQSVLTNFVEAMITTLYSGQSVNIKNFGVFSLSARTAGVLDVKE 96

Query: 63  -VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
              +N++    VKI       F+ SS ++  I     G+K +  D+ +
Sbjct: 97  CTAKNIK---AVKI------NFRPSSTVRPDIAATRAGQKIDFYDLEA 135


>gi|257468467|ref|ZP_05632561.1| hypothetical protein FulcA4_03939 [Fusobacterium ulcerans ATCC
          49185]
          Length = 45

 Score = 41.8 bits (98), Expect = 0.033,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 47 KISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90
          K     TF +  K  RV  N  T + + I P++++ F+AS  +K
Sbjct: 2  KFPKIGTFEILSKQPRVISNPVTRELMTIYPKKIIKFRASKKIK 45


>gi|319902288|ref|YP_004162016.1| DNA-binding protein [Bacteroides helcogenes P 36-108]
 gi|319417319|gb|ADV44430.1| DNA-binding protein [Bacteroides helcogenes P 36-108]
          Length = 161

 Score = 41.8 bits (98), Expect = 0.033,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 43/106 (40%), Gaps = 16/106 (15%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR------ 62
           D+   + ++  L+  D    +T     +  +   G+++ I +F  F +  + +       
Sbjct: 37  DIAYMMKEKSSLTLGDIQSVLTNFVEAMLATLYNGQSVNIKNFGVFSLSARTAGVTELKE 96

Query: 63  -VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107
              +N++    VKI       F+ SS ++  I     G+K +  D+
Sbjct: 97  CTAKNIK---AVKI------NFRPSSTVRPDITATRAGQKIDFYDL 133


>gi|237720567|ref|ZP_04551048.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229450318|gb|EEO56109.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 207

 Score = 41.8 bits (98), Expect = 0.033,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L++ ++K  G         +  L +++      G  +++  F  F  K K SR+  N   
Sbjct: 37  LIRGVAKRTGFKEGVIEGILMELKDDVLQYLGEGYRVELGEFGFFSAKVKASRLVAN--- 93

Query: 70  NQEVKIDPRRVVV----FKASSILKKRIMDDMRGRKC 102
             +  I    VV     F+AS  ++  I  D+  RKC
Sbjct: 94  --KNDIRSESVVFNGVNFRASKSMRVGIRGDLERRKC 128


>gi|225388722|ref|ZP_03758446.1| hypothetical protein CLOSTASPAR_02458 [Clostridium asparagiforme
           DSM 15981]
 gi|225045234|gb|EEG55480.1| hypothetical protein CLOSTASPAR_02458 [Clostridium asparagiforme
           DSM 15981]
          Length = 116

 Score = 41.8 bits (98), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/102 (12%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIK-ISSFATF--HVKQKGS 61
           + +  +++ I+   G S +++ +F   L +   ++    E+I  +  + +F   ++    
Sbjct: 1   MDKDRMLREIAVRSGYSEEETRQFYAALVDVFTEALGNRESIDCLPEWGSFIPKLRDNMG 60

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103
           R   + +  ++    P   + F+ S   +++++ D++  +  
Sbjct: 61  RQENSPRAEKK----PHYYIRFRPSKEFERKLLLDIKTDETG 98


>gi|239927993|ref|ZP_04684946.1| hypothetical protein SghaA1_07201 [Streptomyces ghanaensis ATCC
          14672]
          Length = 85

 Score = 41.8 bits (98), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 31/98 (31%)

Query: 5  ITRSDLVKSISKEF-----GLSRKDSTRFVTTLFNE------ICDSAVRGEAIKISSFAT 53
          + ++ L+++ +         L+ +     +  LF        I ++  RGE + + SF +
Sbjct: 1  MDKTQLIEATTGRAADDGDQLTTESVGHTLDALFGTVEHPGSIAEALGRGETVHLGSFGS 60

Query: 54 FHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          FH+                          F+    L +
Sbjct: 61 FHL--------------------EGGTAAFRPGKALTE 78


>gi|329965438|ref|ZP_08302362.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
 gi|328522230|gb|EGF49344.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
          Length = 162

 Score = 41.8 bits (98), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 44/108 (40%), Gaps = 16/108 (14%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR------ 62
           D+   + ++  L+  D    +T     +  +   G+++ I +F  F +  + +       
Sbjct: 37  DIAYVMKEKSSLTLGDIQSVLTNFVEAMVATLYNGQSVNIKNFGVFSLSARTAGVTELKE 96

Query: 63  -VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
              +N++    VKI       F+ SS ++  I     G+K +  D+ +
Sbjct: 97  CTAKNIK---AVKI------NFRPSSTVRPDITATRVGQKIDFYDLEA 135


>gi|313203263|ref|YP_004041920.1| hypothetical protein Palpr_0781 [Paludibacter propionicigenes
          WB4]
 gi|312442579|gb|ADQ78935.1| hypothetical protein Palpr_0781 [Paludibacter propionicigenes
          WB4]
          Length = 132

 Score = 41.8 bits (98), Expect = 0.035,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 18/48 (37%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          L +  ++   LS  +    +      I D  +    + +  F TF +K
Sbjct: 39 LAEKAARRCNLSNFEIEMAIKVALEAIQDELLDSNNVCLEGFGTFSLK 86


>gi|188591441|ref|YP_001796040.1| putative Histone-like DNA-binding protein [Cupriavidus taiwanensis]
 gi|170938836|emb|CAP63835.1| putative Histone-like DNA-binding protein [Cupriavidus taiwanensis
           LMG 19424]
          Length = 143

 Score = 41.8 bits (98), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 8/97 (8%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ----- 58
           T  +S L+  +  +  L +K     +  L N +  +  +  A + +    F V       
Sbjct: 45  TFNKSSLLAHLVAQTELDKKTVQTVLAHLENTVLSAVHKKGAGEFTLPGLFKVSAIQVPA 104

Query: 59  KGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92
              R G+N  T QE           V  +    LK  
Sbjct: 105 TKKRFGKNPFTGQEQWFAAKPASVKVKVRPLKKLKDA 141


>gi|194334663|ref|YP_002016523.1| hypothetical protein Paes_1864 [Prosthecochloris aestuarii DSM
          271]
 gi|194312481|gb|ACF46876.1| hypothetical protein Paes_1864 [Prosthecochloris aestuarii DSM
          271]
          Length = 160

 Score = 41.8 bits (98), Expect = 0.035,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 7  RSDL-VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          ++DL +  +++  GL      R++    + + +  +   +I +     F V+ 
Sbjct: 2  KNDLCISRLAETLGLDHATVRRYLELFVSGLGEELLERRSICLKGLGLFEVRH 54


>gi|218129040|ref|ZP_03457844.1| hypothetical protein BACEGG_00613 [Bacteroides eggerthii DSM
          20697]
 gi|317477497|ref|ZP_07936723.1| hypothetical protein HMPREF1016_03708 [Bacteroides eggerthii
          1_2_48FAA]
 gi|217988816|gb|EEC55134.1| hypothetical protein BACEGG_00613 [Bacteroides eggerthii DSM
          20697]
 gi|316906361|gb|EFV28089.1| hypothetical protein HMPREF1016_03708 [Bacteroides eggerthii
          1_2_48FAA]
          Length = 164

 Score = 41.4 bits (97), Expect = 0.037,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53
          L  +I K   +++ D    +  L  EI  +   G+ +K++   T
Sbjct: 40 LAANIQKNCAMTKGDVKHVIEALVEEIQTNLANGDKVKLNLLGT 83


>gi|150007931|ref|YP_001302674.1| hypothetical protein BDI_1292 [Parabacteroides distasonis ATCC
           8503]
 gi|149936355|gb|ABR43052.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
          Length = 146

 Score = 41.4 bits (97), Expect = 0.037,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 25/124 (20%)

Query: 4   TITRS-------DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
            + +S       +L   I+     SR D    V  L   +     +GE +++     F  
Sbjct: 26  AVNKSTGTCDFEELCDQIADRSTASRGDVHVVVDGLLYILKQRLQKGETVQLGDLGHFQ- 84

Query: 57  KQKGSRVGRNLQTNQEVK-------IDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
               + +G       +++       I   R+V F+ S  LK  +   ++  K    D  +
Sbjct: 85  ----AVIG---SKGTKLESDFNASLIKRPRIV-FRPSVTLK-SVTSLVKFEKI-VPDAPA 134

Query: 110 PSGS 113
           P GS
Sbjct: 135 PGGS 138


>gi|319760136|ref|YP_004124075.1| histone family protein DNA-binding protein [Alicycliphilus
           denitrificans BC]
 gi|317119742|gb|ADV02230.1| histone family protein DNA-binding protein [Alicycliphilus
           denitrificans BC]
          Length = 123

 Score = 41.4 bits (97), Expect = 0.037,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQ---K 59
           +T++ L   +++  G+  K     +  L   +  S   +G +A  +       V++   K
Sbjct: 26  LTKTSLTALLAERTGVDAKSVKAVLAALEGAMLGSVNKKGAQAFTLPGLLKIEVQKIPAK 85

Query: 60  GSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92
             R G N  T +E           +  +A   LK  
Sbjct: 86  PKRKGINPFTKEEQVFAAKPASVRIKARALKKLKDA 121


>gi|189468511|ref|ZP_03017296.1| hypothetical protein BACINT_04914 [Bacteroides intestinalis DSM
           17393]
 gi|189436775|gb|EDV05760.1| hypothetical protein BACINT_04914 [Bacteroides intestinalis DSM
           17393]
          Length = 204

 Score = 41.4 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 9/113 (7%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           TIT  +  + + KE  +        +  + N + D    G  +++     F    K +R 
Sbjct: 31  TITAKEFQERMVKEQHMPHAMIVGIMQAISNALGDWLADGYNVELDELGYFSTTLKCTRT 90

Query: 64  GRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKCNKDDVTSPSG 112
             N +      I    V    V F+ S   KK +   M   + +K   T    
Sbjct: 91  AMNKK-----DIRAESVRFETVKFRPSKTFKKYVRYQMHLERLDKKMTTKKPA 138


>gi|326319191|ref|YP_004236863.1| histone family protein DNA-binding protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323376027|gb|ADX48296.1| histone family protein DNA-binding protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 156

 Score = 41.4 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 8/97 (8%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSF---ATFHVKQ 58
           T T++ L+  ++++ G+  K +   +  L   I  S   +G     +          V  
Sbjct: 58  TFTKTSLIAHLAEQAGVEPKAAKAVMAALEATILGSVHKKGSGEFTLPGLMKIGLQQVPA 117

Query: 59  KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92
           K  R G++  T +E           +  +A   LK  
Sbjct: 118 KKKRFGKDPFTGEERWFPAKPASVKIKTRALKKLKDA 154


>gi|298376724|ref|ZP_06986679.1| DNA-binding protein [Bacteroides sp. 3_1_19]
 gi|298266602|gb|EFI08260.1| DNA-binding protein [Bacteroides sp. 3_1_19]
          Length = 146

 Score = 41.4 bits (97), Expect = 0.039,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 24/123 (19%)

Query: 4   TITRS-------DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
            + +S       +L   I+     SR D    V  L   +     +GE +++     F  
Sbjct: 26  AVNKSTGTCDFEELCDQIADRSTASRGDVQVVVDGLLYILKQRLQKGETVQLGDLGHFQ- 84

Query: 57  KQKGSRVGRNLQTNQEVK-------IDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
               + +G       +++       I   R+V F+ S  LK  +    +  K   D    
Sbjct: 85  ----AVIG---SKGTKLESDFNASLIKRPRIV-FRPSVTLK-SVTGLAKFEKIMPDAPAP 135

Query: 110 PSG 112
             G
Sbjct: 136 GGG 138


>gi|291436325|ref|ZP_06575715.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
 gi|291339220|gb|EFE66176.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
          Length = 111

 Score = 41.4 bits (97), Expect = 0.040,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 31/98 (31%)

Query: 5   ITRSDLVKSISKEF-----GLSRKDSTRFVTTLFNE------ICDSAVRGEAIKISSFAT 53
           + ++ L+++ +         L+ +     +  LF        I ++  RGE + + SF +
Sbjct: 27  MDKTQLIEATTGRAADDGDQLTTESVGHTLDALFGTVEHPGSIAEALGRGETVHLGSFGS 86

Query: 54  FHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
           FH+                          F+    L +
Sbjct: 87  FHL--------------------EGGTAAFRPGKALTE 104


>gi|281420313|ref|ZP_06251312.1| putative DNA-binding protein [Prevotella copri DSM 18205]
 gi|281405615|gb|EFB36295.1| putative DNA-binding protein [Prevotella copri DSM 18205]
          Length = 212

 Score = 41.4 bits (97), Expect = 0.040,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 11/104 (10%)

Query: 2   SKTITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK--- 57
           ++T++R + VK +     G+S   +   +T + + + D    G  + +  F TF +    
Sbjct: 27  NRTLSRKEFVKMMQNYHRGISESTTEAVLTDVVDMLTDMLSMGYNVNLEGFGTFSLSLAF 86

Query: 58  -QKGSRVGRNL---QTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
             +  R   N     T ++V +   + + FKAS    K +  + 
Sbjct: 87  EDEKPREILNPDDKMTYRKVGV---KDINFKASPEFIKEVKRET 127


>gi|218131335|ref|ZP_03460139.1| hypothetical protein BACEGG_02946 [Bacteroides eggerthii DSM
          20697]
 gi|317476364|ref|ZP_07935613.1| hypothetical protein HMPREF1016_02596 [Bacteroides eggerthii
          1_2_48FAA]
 gi|217986267|gb|EEC52604.1| hypothetical protein BACEGG_02946 [Bacteroides eggerthii DSM
          20697]
 gi|316907390|gb|EFV29095.1| hypothetical protein HMPREF1016_02596 [Bacteroides eggerthii
          1_2_48FAA]
          Length = 161

 Score = 41.4 bits (97), Expect = 0.041,   Method: Composition-based stats.
 Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 4/55 (7%)

Query: 11 VKSIS----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +  I+    +   LS+ D    +      +  +   G ++ I  F  F +  +  
Sbjct: 35 IDKIAYQMKENSSLSKGDILSVIANFVECMRKNLYNGHSVNIRDFGVFSLSARTE 89


>gi|301310028|ref|ZP_07215967.1| putative DNA-binding protein [Bacteroides sp. 20_3]
 gi|300831602|gb|EFK62233.1| putative DNA-binding protein [Bacteroides sp. 20_3]
          Length = 146

 Score = 41.4 bits (97), Expect = 0.041,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 24/123 (19%)

Query: 4   TITRS-------DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
            + +S       +L   I+     SR D    V  L   +     +GE +++     F  
Sbjct: 26  AVNKSTGTCDFEELCDQIADRSTASRGDVQVVVDGLLYILKQRLQKGETVQLGDLGHFQ- 84

Query: 57  KQKGSRVGRNLQTNQEVK-------IDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
               + +G       +++       I   R+V F+ S  LK  +    +  K   D    
Sbjct: 85  ----AVIG---SKGTKLESDFNASLIKRPRIV-FRPSVTLK-SVTGLAKFEKIVPDAPAP 135

Query: 110 PSG 112
             G
Sbjct: 136 GGG 138


>gi|295086081|emb|CBK67604.1| Bacterial DNA-binding protein. [Bacteroides xylanisolvens XB1A]
          Length = 207

 Score = 41.4 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 1/93 (1%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L++ ++K  G         +  L  ++      G  +++  F  F  K K SR+  N + 
Sbjct: 37  LIRGVAKRTGFKEGVIEGILIELKEDVLQYLGEGYRVELGEFGFFSAKVKASRLVAN-KN 95

Query: 70  NQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           +   +      V F+AS  ++  I  D+  RKC
Sbjct: 96  DIRSESVAFNGVNFRASKSMRVGIRGDLERRKC 128


>gi|298481205|ref|ZP_06999399.1| non-specific DNA binding protein [Bacteroides sp. D22]
 gi|298272779|gb|EFI14346.1| non-specific DNA binding protein [Bacteroides sp. D22]
          Length = 176

 Score = 41.4 bits (97), Expect = 0.044,   Method: Composition-based stats.
 Identities = 12/96 (12%), Positives = 36/96 (37%), Gaps = 14/96 (14%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           + +++    + + +     LS  D    +     ++ +  + G+++ I     F +  + 
Sbjct: 30  LGQSVNLKYIAQKMQDRSSLSVGDIKSVIQNFVEKMKEQLLEGKSVNIEGLGVFMLTARS 89

Query: 61  SRVGRNLQTNQEV--KIDPRRV----VVFKASSILK 90
                      E+   I+ + V    + F+A+  L+
Sbjct: 90  K--------GAELAKDINAKSVESVRIFFQANKELR 117


>gi|237714678|ref|ZP_04545159.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406545|ref|ZP_06083094.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645695|ref|ZP_06723382.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294806963|ref|ZP_06765786.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229445447|gb|EEO51238.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355248|gb|EEZ04339.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638974|gb|EFF57305.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294445850|gb|EFG14494.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|295084073|emb|CBK65596.1| DNA-binding protein, histone-like, putative [Bacteroides
           xylanisolvens XB1A]
          Length = 176

 Score = 41.4 bits (97), Expect = 0.044,   Method: Composition-based stats.
 Identities = 12/96 (12%), Positives = 36/96 (37%), Gaps = 14/96 (14%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           + +++    + + +     LS  D    +     ++ +  + G+++ I     F +  + 
Sbjct: 30  LGQSVNLKYIAQKMQDRSSLSVGDIKSVIQNFVEKMKEQLLEGKSVNIEGLGVFMLTARS 89

Query: 61  SRVGRNLQTNQEV--KIDPRRV----VVFKASSILK 90
                      E+   I+ + V    + F+A+  L+
Sbjct: 90  K--------GAELAKDINAKSVESVRIFFQANKELR 117


>gi|160884492|ref|ZP_02065495.1| hypothetical protein BACOVA_02476 [Bacteroides ovatus ATCC 8483]
 gi|260174700|ref|ZP_05761112.1| hypothetical protein BacD2_22789 [Bacteroides sp. D2]
 gi|293369787|ref|ZP_06616363.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|299145959|ref|ZP_07039027.1| putative non-specific DNA binding protein [Bacteroides sp. 3_1_23]
 gi|315922960|ref|ZP_07919200.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156110231|gb|EDO11976.1| hypothetical protein BACOVA_02476 [Bacteroides ovatus ATCC 8483]
 gi|292635209|gb|EFF53725.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|298516450|gb|EFI40331.1| putative non-specific DNA binding protein [Bacteroides sp. 3_1_23]
 gi|313696835|gb|EFS33670.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 174

 Score = 41.4 bits (97), Expect = 0.045,   Method: Composition-based stats.
 Identities = 12/96 (12%), Positives = 36/96 (37%), Gaps = 14/96 (14%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           + +++    + + +     LS  D    +     ++ +  + G+++ I     F +  + 
Sbjct: 30  LGQSVNLKYIAQKMQDRSSLSIGDIKSVIQNFVEKMKEQLLEGKSVNIEGLGVFMLTARS 89

Query: 61  SRVGRNLQTNQEV--KIDPRRV----VVFKASSILK 90
                      E+   I+ + V    + F+A+  L+
Sbjct: 90  K--------GAELAKDINAKSVDSVRIFFQANKELR 117


>gi|254461449|ref|ZP_05074865.1| DNA-binding protein HU, putative [Rhodobacterales bacterium
          HTCC2083]
 gi|206678038|gb|EDZ42525.1| DNA-binding protein HU, putative [Rhodobacteraceae bacterium
          HTCC2083]
          Length = 101

 Score = 41.4 bits (97), Expect = 0.046,   Method: Composition-based stats.
 Identities = 5/51 (9%), Positives = 22/51 (43%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53
            + + +L++ +++  G+ +KD+   +  +   +  +   G  + +     
Sbjct: 13 PALKKKELIEIVTERSGIKKKDAKPVIEAMLAVLGQTLAEGREMNLQPLGK 63


>gi|153806423|ref|ZP_01959091.1| hypothetical protein BACCAC_00687 [Bacteroides caccae ATCC 43185]
 gi|149131100|gb|EDM22306.1| hypothetical protein BACCAC_00687 [Bacteroides caccae ATCC 43185]
          Length = 170

 Score = 41.0 bits (96), Expect = 0.048,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 14/87 (16%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L + +     LS  D    +    +++ +  + G+++ I     F +  +          
Sbjct: 39  LAEKMRDRSSLSVGDIKSVIQNFVDKMKEQLLEGKSVNIEGLGVFMLAARSK-------- 90

Query: 70  NQEV--KIDPRRV----VVFKASSILK 90
             ++   I  + V    + F+A+  L+
Sbjct: 91  GADLAKDITAKSVESVRIFFQANKELR 117


>gi|298483834|ref|ZP_07002006.1| DNA-binding protein [Bacteroides sp. D22]
 gi|298270021|gb|EFI11610.1| DNA-binding protein [Bacteroides sp. D22]
          Length = 207

 Score = 41.0 bits (96), Expect = 0.049,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 1/93 (1%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L++ ++K  G         +  L  ++      G  +++  F  F  K K SR+  N + 
Sbjct: 37  LIRGVAKRTGFKEGVIEGILIELKEDVLQYLGEGYRVELGEFGFFSAKVKASRLVAN-KN 95

Query: 70  NQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           +   +      V F+AS  ++  I  D+  RKC
Sbjct: 96  DIRSESVAFNGVNFRASKSMRVGIRGDLERRKC 128


>gi|120613143|ref|YP_972821.1| histone family protein DNA-binding protein [Acidovorax citrulli
           AAC00-1]
 gi|120591607|gb|ABM35047.1| histone family protein DNA-binding protein [Acidovorax citrulli
           AAC00-1]
          Length = 155

 Score = 41.0 bits (96), Expect = 0.049,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 8/97 (8%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSF---ATFHVKQ 58
           T T++ L+  ++++ G+  K +   +  L   I  S   +G     +          V  
Sbjct: 57  TFTKTSLIAHLAEQAGVEPKAAKAVMAALEAAILGSVHKKGSGEFTLPGLMKIGLQQVPA 116

Query: 59  KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92
           K  R G++  T +E           +  +A   LK  
Sbjct: 117 KKKRFGKDPFTGEERWFPAKPASVKIKTRALKKLKDA 153


>gi|149203598|ref|ZP_01880567.1| hypothetical protein RTM1035_06018 [Roseovarius sp. TM1035]
 gi|149142715|gb|EDM30757.1| hypothetical protein RTM1035_06018 [Roseovarius sp. TM1035]
          Length = 175

 Score = 41.0 bits (96), Expect = 0.049,   Method: Composition-based stats.
 Identities = 5/52 (9%), Positives = 20/52 (38%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
           + +L+  +  +  + +K++   V  +   + +    G  I +       + +
Sbjct: 79  KQELIDKVLAKGDIKKKNAKPVVEAVLEVLGEVLAEGREINLPPLGKIKINR 130


>gi|207722729|ref|YP_002253164.1| histone-like dna-binding protein dna-binding plasmid [Ralstonia
           solanacearum MolK2]
 gi|206587911|emb|CAQ18492.1| probable histone-like dna-binding protein dna-binding plasmid
           [Ralstonia solanacearum MolK2]
          Length = 135

 Score = 41.0 bits (96), Expect = 0.051,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 10/98 (10%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ----- 58
           T T++ LV  + ++  +  K     +  L N I  +  +  A + +    F V       
Sbjct: 37  TFTKASLVSHLVEQTEVDAKSVKAVLQHLENTILGALHKKGAGEFTLPGLFKVVSVKVPA 96

Query: 59  KGSRVGRNLQTNQ----EVKIDPRRVVVFKASSILKKR 92
              R G+N  T +    E K      V  +    +K  
Sbjct: 97  TKRRFGKNPFTGEDQWFEAK-PATVRVKVRPLKKVKDA 133


>gi|157093123|gb|ABV22216.1| major basic nuclear protein [Karlodinium micrum]
          Length = 104

 Score = 41.0 bits (96), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 6/96 (6%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           K +T+  L K+++ E GL +K  +  + +L +       +     I        + K + 
Sbjct: 10  KAMTKGALAKALATEHGLKQKACSDVLNSLASIATAEVKKTGIFSIPGLCRIKTRTKPAT 69

Query: 63  VG--RNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
               RN    +EVK+     + +V    ++ LKK+I
Sbjct: 70  KAGVRN-VFGKEVKVKAKPAKTIVKGYCAAALKKQI 104


>gi|29347400|ref|NP_810903.1| hypothetical protein BT_1990 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570563|ref|ZP_04847971.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29339300|gb|AAO77097.1| Histone-like bacterial DNA-binding protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251839512|gb|EES67595.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 161

 Score = 41.0 bits (96), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 25/119 (21%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           ++ + I +   ++  D    +  L  E+ DS  +GE +++ +  +F+V  +         
Sbjct: 38  EMAERIQRSSTVNWADVVCVLRALQTEMIDSFKKGEIVRLGNIGSFYVTLRS-------- 89

Query: 69  TNQEVK-------IDPRRVVVFKASSILKKRIM---------DDMRGRKCNKDDVTSPS 111
               V+       I   RV  F+    +K  +          ++  G K + ++     
Sbjct: 90  NGVLVQKDVKEGLIKGARV-RFRPGKEIKDALKTLDFSKYKPENSEGDKTDPENPKPKP 147


>gi|21243654|ref|NP_643236.1| histone-like protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21109232|gb|AAM37772.1| histone-like protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 141

 Score = 41.0 bits (96), Expect = 0.051,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 22/105 (20%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH------- 55
           + ++++ LV  I++   L+ KD    + +L      S  +          TF        
Sbjct: 42  EALSKTGLVAHIAESTQLAPKDVRAVLASLEATAHASLSK------KGVGTFTIPGMLKL 95

Query: 56  ----VKQKGSRVGRNLQTNQEVKI----DPRRVVVFKASSILKKR 92
               V  K  R G N  T +E +I         +  +    LK  
Sbjct: 96  TTVHVPAKPKRKGINPFTKEE-QIFAAKPATTKLKSRMMKRLKDA 139


>gi|237718647|ref|ZP_04549128.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229452107|gb|EEO57898.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 174

 Score = 41.0 bits (96), Expect = 0.052,   Method: Composition-based stats.
 Identities = 12/96 (12%), Positives = 36/96 (37%), Gaps = 14/96 (14%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           + +++    + + +     LS  D    +     ++ +  + G+++ I     F +  + 
Sbjct: 30  LGQSVNLKYIAQKMQDRSSLSVGDIKSVIQNFVEKMKEQLLEGKSVNIEGLGVFMLTARS 89

Query: 61  SRVGRNLQTNQEV--KIDPRRV----VVFKASSILK 90
                      E+   I+ + V    + F+A+  L+
Sbjct: 90  K--------GAELAKDINAKSVDSVRIFFQANKELR 117


>gi|307566376|ref|ZP_07628815.1| putative DNA-binding protein [Prevotella amnii CRIS 21A-A]
 gi|307344953|gb|EFN90351.1| putative DNA-binding protein [Prevotella amnii CRIS 21A-A]
          Length = 142

 Score = 41.0 bits (96), Expect = 0.053,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 20/48 (41%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          DL  +I +    +R D    V  L +EI      G+ + +     FH+
Sbjct: 35 DLSNAIQESTSFTRGDVRGIVVALIDEIGFQLANGKTVVLEGLGRFHL 82


>gi|260885973|ref|ZP_05736255.2| putative DNA-binding protein [Prevotella tannerae ATCC 51259]
 gi|260851120|gb|EEX70989.1| putative DNA-binding protein [Prevotella tannerae ATCC 51259]
          Length = 144

 Score = 41.0 bits (96), Expect = 0.053,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 10/85 (11%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L   I     LSR D    +  + +E+      G  + +    +F +K +          
Sbjct: 37  LATDIESRTTLSRADVKGLLDAVEHELIAQLAAGNRVALGDLGSFKLKIRSRGE------ 90

Query: 70  NQEVKIDPRRV----VVFKASSILK 90
            ++ K  P+ +    V+F+ S+ L+
Sbjct: 91  KEKKKFTPKNILGTRVLFRCSTKLR 115


>gi|160883448|ref|ZP_02064451.1| hypothetical protein BACOVA_01417 [Bacteroides ovatus ATCC 8483]
 gi|237720227|ref|ZP_04550708.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|293371153|ref|ZP_06617690.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|299148079|ref|ZP_07041142.1| putative non-specific DNA binding protein [Bacteroides sp.
          3_1_23]
 gi|156111168|gb|EDO12913.1| hypothetical protein BACOVA_01417 [Bacteroides ovatus ATCC 8483]
 gi|229450779|gb|EEO56570.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292633811|gb|EFF52363.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|298514262|gb|EFI38148.1| putative non-specific DNA binding protein [Bacteroides sp.
          3_1_23]
          Length = 170

 Score = 41.0 bits (96), Expect = 0.055,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 25/63 (39%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           K +    + + I+++  L+  D    +  L + + +  +    +++    TF +  K  
Sbjct: 29 GKMVNTQKMAELIAEKASLTAGDVHNVIRNLMSVMREQLLNSRTVRLEGLGTFTMIAKAG 88

Query: 62 RVG 64
            G
Sbjct: 89 GKG 91


>gi|329964795|ref|ZP_08301818.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
 gi|328524646|gb|EGF51709.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
          Length = 212

 Score = 41.0 bits (96), Expect = 0.055,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH----VKQKGSRV 63
          +   +S     +R D    V  +  EI  S   G ++KI     F     +++   R 
Sbjct: 35 IADKVSYATSFTRGDIKGLVQAITEEIAHSMSEGYSVKIEGLGVFTPSLGLRKDKERE 92


>gi|319901101|ref|YP_004160829.1| DNA-binding protein [Bacteroides helcogenes P 36-108]
 gi|319416132|gb|ADV43243.1| DNA-binding protein [Bacteroides helcogenes P 36-108]
          Length = 175

 Score = 41.0 bits (96), Expect = 0.055,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          L + ++   G+S  D    +  L   I ++   GE++ +    +FHV
Sbjct: 40 LAQRMAFRKGMSAGDVEGVLVDLPRFIEEALRSGESVTVRGLGSFHV 86


>gi|258648346|ref|ZP_05735815.1| putative DNA-binding protein [Prevotella tannerae ATCC 51259]
 gi|260851511|gb|EEX71380.1| putative DNA-binding protein [Prevotella tannerae ATCC 51259]
          Length = 207

 Score = 41.0 bits (96), Expect = 0.055,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 20/114 (17%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS-------- 61
           L + IS     S  D    +  L   +      G  + +     F +  KG         
Sbjct: 35  LAQKISVGTTFSSADLIGALDALKEAMIAELKEGGRVHLPGLGYFSLSIKGEVYQDAKTQ 94

Query: 62  --RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
             R+ R+ +      I   R + F     L KR+ D       +    + P   
Sbjct: 95  RYRL-RSPR------I---RKIKFLPERTLMKRLADTHFANVGSTSSTSKPLNE 138


>gi|289678204|ref|ZP_06499094.1| HU family DNA-binding protein [Pseudomonas syringae pv. syringae
          FF5]
          Length = 51

 Score = 41.0 bits (96), Expect = 0.056,   Method: Composition-based stats.
 Identities = 7/50 (14%), Positives = 17/50 (34%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53
           +T+  L+  I++     +  +   +  L   + D    G  I +     
Sbjct: 2  ALTKDQLIADIAEAIDAPKTTARNALEQLGQIVADQLENGVEITLPGIGK 51


>gi|218260516|ref|ZP_03475786.1| hypothetical protein PRABACTJOHN_01449 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224501|gb|EEC97151.1| hypothetical protein PRABACTJOHN_01449 [Parabacteroides johnsonii
           DSM 18315]
          Length = 194

 Score = 41.0 bits (96), Expect = 0.056,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 39/101 (38%), Gaps = 11/101 (10%)

Query: 6   TRS--DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+   ++   I++   ++  D    +  L   +      G  +++     F    K  + 
Sbjct: 23  TKKMDEICSFINECCSVNSADIKGVLDALSKYVGRELSYGSCVELDGLGFFSPALKTFKD 82

Query: 64  GRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMRGR 100
           G N +  +E+     +V    V F+ +  LKK++ +    +
Sbjct: 83  GVNEK-GEEIY----KVRVDGVNFRCAKKLKKQVRESQPQK 118


>gi|116695192|ref|YP_840768.1| DNA-binding protein, histone-like [Ralstonia eutropha H16]
 gi|113529691|emb|CAJ96038.1| Bacterial DNA-binding protein, histone-like [Ralstonia eutropha
           H16]
          Length = 152

 Score = 41.0 bits (96), Expect = 0.058,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 8/97 (8%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATF---HVKQ 58
           T  +S LV  +  +  L  K     +  L   I  +   +G     +          V  
Sbjct: 54  TFNKSSLVAHLVAQTQLEAKAVKTVLAHLETTIIGALNKKGAGEFTLPGLLKVTAQQVPA 113

Query: 59  KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92
           K  R G++  T +E           V  +    LK  
Sbjct: 114 KKKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 150


>gi|237719825|ref|ZP_04550306.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229451094|gb|EEO56885.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 95

 Score = 41.0 bits (96), Expect = 0.059,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 19/50 (38%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          + +  +V  I+    L+  D    +  L   I  +   G  +++    +F
Sbjct: 32 MKQKQIVDQIADRCTLTGSDIKAVLDALMVVIKRNLANGSPVRLGDLGSF 81


>gi|302347061|ref|YP_003815359.1| putative DNA-binding protein [Prevotella melaninogenica ATCC
          25845]
 gi|302151018|gb|ADK97279.1| putative DNA-binding protein [Prevotella melaninogenica ATCC
          25845]
          Length = 167

 Score = 41.0 bits (96), Expect = 0.061,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
           DL   IS+   ++  D    ++ L  E+      G  +K+    TF V
Sbjct: 28 KDLALRISERCTVTEPDILAVISALVFEMNQVLKDGNRVKLDGLGTFRV 76


>gi|186473326|ref|YP_001860668.1| histone family protein DNA-binding protein [Burkholderia phymatum
           STM815]
 gi|184195658|gb|ACC73622.1| histone family protein DNA-binding protein [Burkholderia phymatum
           STM815]
          Length = 150

 Score = 41.0 bits (96), Expect = 0.061,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVK---Q 58
           T T++ L   +++  G+  K +   +  L + I  S   +G     +S      V+    
Sbjct: 51  TFTKASLAAHVAERAGVEPKSAKAVLAALEDTILGSVHKKGAGEFTLSGLLKIVVQAVPA 110

Query: 59  KGSRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92
           K  R G++  T QE     +     +  +A   LK  
Sbjct: 111 KKKRFGKDPFTGQERWFPAKPASVRIKARALKKLKDA 147


>gi|167762549|ref|ZP_02434676.1| hypothetical protein BACSTE_00905 [Bacteroides stercoris ATCC
           43183]
 gi|167699655|gb|EDS16234.1| hypothetical protein BACSTE_00905 [Bacteroides stercoris ATCC
           43183]
          Length = 204

 Score = 40.7 bits (95), Expect = 0.062,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 38/113 (33%), Gaps = 17/113 (15%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF----HVKQK 59
           TI R + +  +    G+SR      +    +E+ D    G  +++     F      +++
Sbjct: 31  TIDRKEFIDRVHLFTGISRSVLEGAMAAFMDELRDCLANGWTVELGELGYFTPSLSCRRR 90

Query: 60  GSRVGRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKCNKDDVT 108
                      ++ ++    V    + F+      + +   MR  +  +  V 
Sbjct: 91  AM---------EKDEVRAASVALRGLNFRLGKKFHEDLSGKMRLERRPQPAVP 134


>gi|224537892|ref|ZP_03678431.1| hypothetical protein BACCELL_02779 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520488|gb|EEF89593.1| hypothetical protein BACCELL_02779 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 215

 Score = 40.7 bits (95), Expect = 0.063,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 7/88 (7%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           ++ + I K   L+  D +  +  L + + +    G  + +     F+   K    G   +
Sbjct: 39  EIRRKIQKRSSLTETDVSAVLDALSHVMGEELSEGRQVHLDGIGYFYPTLKSE-KGITRE 97

Query: 69  T---NQEVKIDPRRVVVFKASSILKKRI 93
           T   N++V++   + + F+A   LK  +
Sbjct: 98  TDRKNEKVRL---KGIKFRADRALKDEV 122


>gi|328947219|ref|YP_004364556.1| hypothetical protein Tresu_0300 [Treponema succinifaciens DSM 2489]
 gi|328447543|gb|AEB13259.1| hypothetical protein Tresu_0300 [Treponema succinifaciens DSM 2489]
          Length = 255

 Score = 40.7 bits (95), Expect = 0.066,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 10  LVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           L+    K+  G++   +   ++ +  EI ++  RGE++ +    TF++    +  G +  
Sbjct: 45  LIARTQKKDIGVNAITAKHILSLIKAEIIEALQRGESVNLMDLGTFYI----AASGTSGN 100

Query: 69  TNQEVKIDPRRVVVFKASSILKKRIMD 95
           T +  +I  + +V F +S    + +  
Sbjct: 101 TAETAEIK-KLLVKFTSSKETNEAVSK 126


>gi|289664570|ref|ZP_06486151.1| bacterial DNA-binding protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 141

 Score = 40.7 bits (95), Expect = 0.066,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 22/105 (20%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH------- 55
           + ++++ LV  I++   L+ KD    + +L      S  +          TF        
Sbjct: 42  EALSKTGLVAHIAESTQLAPKDVRAVLASLEATAHASLSK------KGVGTFTIPGMLKL 95

Query: 56  ----VKQKGSRVGRNLQTNQEVKI----DPRRVVVFKASSILKKR 92
               V  K  R G N  T +E +I         +  +    LK  
Sbjct: 96  TTVHVPAKPKRKGINPFTKEE-QIFAAKPATSKLKSRVMKRLKDA 139


>gi|329955615|ref|ZP_08296523.1| putative DNA-binding protein [Bacteroides clarus YIT 12056]
 gi|328526018|gb|EGF53042.1| putative DNA-binding protein [Bacteroides clarus YIT 12056]
          Length = 204

 Score = 40.7 bits (95), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 41/115 (35%), Gaps = 9/115 (7%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           TI + + +  +    G+SR      +    +E+ D    G  +++     F       R 
Sbjct: 31  TIDKKEFIDRVHLFTGISRSVLEGTMAAFMDELRDCLANGWTVELGELGYFTPSLSCQRR 90

Query: 64  GRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY 114
                  ++ K+    V    + F+      + +   M+  +  +  V++ S ++
Sbjct: 91  AM-----EKDKVRAASVALRGLNFRLGKRFYEELGSKMKLERKPRPVVSASSDTF 140


>gi|153807005|ref|ZP_01959673.1| hypothetical protein BACCAC_01282 [Bacteroides caccae ATCC 43185]
 gi|149130125|gb|EDM21335.1| hypothetical protein BACCAC_01282 [Bacteroides caccae ATCC 43185]
          Length = 207

 Score = 40.7 bits (95), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L + I     L+  D    + +L + + +    GE++ +     F +K        + + 
Sbjct: 37  LARQIQTATSLTEGDVKSVLESLSHFMGERLREGESVHLDGIGYFQIKLNSQEPITSPKL 96

Query: 70  NQEVKIDPRRVVVFKASSILKKRI 93
               +I  +  + FKA   LKK +
Sbjct: 97  KAN-QIKLKANISFKADIKLKKSV 119


>gi|73537884|ref|YP_298251.1| histone-like DNA-binding protein [Ralstonia eutropha JMP134]
 gi|72121221|gb|AAZ63407.1| Histone-like bacterial DNA-binding protein [Ralstonia eutropha
           JMP134]
          Length = 154

 Score = 40.7 bits (95), Expect = 0.068,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 8/97 (8%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATF---HVKQ 58
           T  +S LV  +  +  +  K     +  L N I  +   +G     +          V  
Sbjct: 55  TFNKSSLVAHLVAQTQMEPKAVKTVLAHLENTIVGALNKKGAGEFTLPGLLKVTAQQVPA 114

Query: 59  KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92
           K  R G++  T +E           V  +    LK  
Sbjct: 115 KKKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 151


>gi|298385143|ref|ZP_06994702.1| DNA-binding protein [Bacteroides sp. 1_1_14]
 gi|298262287|gb|EFI05152.1| DNA-binding protein [Bacteroides sp. 1_1_14]
          Length = 161

 Score = 40.7 bits (95), Expect = 0.068,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 19/112 (16%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           ++ + I +   ++  D    +  L  E+ DS  +GE +++ +  +F+V  +         
Sbjct: 38  EMAERIQRSSTVNWADVVCVLRALQTEMIDSFKKGEIVRLGNIGSFYVTLRS-------- 89

Query: 69  TNQEVK-------IDPRRVVVFKASSILKKRIMD---DMRGRKCNKDDVTSP 110
               V+       I   RV  F+    +K  +          + ++ D T P
Sbjct: 90  NGVLVQKDVKEGLIKGARV-RFRPGKEIKDALKTLDFSKYKPESSEGDKTDP 140


>gi|319943530|ref|ZP_08017812.1| DNA-binding protein BpH2 [Lautropia mirabilis ATCC 51599]
 gi|319743345|gb|EFV95750.1| DNA-binding protein BpH2 [Lautropia mirabilis ATCC 51599]
          Length = 102

 Score = 40.7 bits (95), Expect = 0.070,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 8/100 (8%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE--AIKISSF---ATFH 55
           M +T T++ L + ++++ G+  K     +  L   I  S  +       +          
Sbjct: 1   MKETFTKAGLAQHLAEQTGVETKAVKAVMAALELTILASVHKKGAREFTLPGLLKIGVID 60

Query: 56  VKQKGSRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92
           V  K  R G +  T QE +   +     +  +A   +K  
Sbjct: 61  VPAKKKRRGIDPFTGQEREFAAKPATVRIKVRALKKIKDA 100


>gi|295086370|emb|CBK67893.1| DNA-binding protein, histone-like, putative [Bacteroides
          xylanisolvens XB1A]
          Length = 156

 Score = 40.7 bits (95), Expect = 0.070,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 18/47 (38%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
            +V+ I+    L+  D    +  L   I  +   G  +++    +F
Sbjct: 35 KQIVEQIADRCTLTGSDIKAVLDALMTVIKRNLANGSPVRLGDLGSF 81


>gi|256840904|ref|ZP_05546412.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738176|gb|EEU51502.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 146

 Score = 40.7 bits (95), Expect = 0.071,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 25/124 (20%)

Query: 4   TITRS-------DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
            + +S       +L   I+     SR D    V  L   +     +GE +++     F  
Sbjct: 26  AVNKSTGTCDFEELCDQIADRSTASRGDVHVVVDGLLYILKQRLQKGETVQLGDLGHFQ- 84

Query: 57  KQKGSRVGRNLQTNQEVK-------IDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
               + +G       +++       I   R+V F+ S  LK  +    +  K    D  +
Sbjct: 85  ----AVIG---SKGTKLESDFNASLIKRPRIV-FRPSVTLK-SVTGLAKFEKI-VPDAPA 134

Query: 110 PSGS 113
           P GS
Sbjct: 135 PGGS 138


>gi|260593025|ref|ZP_05858483.1| putative non-specific DNA binding protein [Prevotella veroralis
          F0319]
 gi|260534997|gb|EEX17614.1| putative non-specific DNA binding protein [Prevotella veroralis
          F0319]
          Length = 157

 Score = 40.7 bits (95), Expect = 0.072,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 1  MSKT--ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          M+ T  ++ + +VK + K   +S  D    +  L  E+ +    G  +++    +F +  
Sbjct: 24 MAPTTPMSLAQIVKRVEKRSTVSSADVKAVLDALQYEVMEVLENGNTVRLGDLGSFRLTM 83

Query: 59 KGS 61
          K  
Sbjct: 84 KSQ 86


>gi|288801963|ref|ZP_06407404.1| DNA-binding protein [Prevotella melaninogenica D18]
 gi|288335398|gb|EFC73832.1| DNA-binding protein [Prevotella melaninogenica D18]
          Length = 173

 Score = 40.7 bits (95), Expect = 0.073,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
           DL   IS+   ++  D    ++ L  E+      G  +K+    TF V
Sbjct: 34 KDLALRISERCTVTEPDILAVISALVFEMNQVLKDGNRVKLDGLGTFRV 82


>gi|295084561|emb|CBK66084.1| DNA-binding protein, histone-like, putative [Bacteroides
           xylanisolvens XB1A]
          Length = 163

 Score = 40.7 bits (95), Expect = 0.074,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 16/108 (14%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------VKQKGSR 62
           L  ++ ++  LS  D    +T L   +  +   G+++ I  F  F        V  K   
Sbjct: 31  LAYTMKEKSSLSLGDIQSVLTNLVEAMRTALFDGKSVNIHDFGVFSLSATTRGVDTKDEC 90

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSP 110
             +N++T   V I       F+ SS ++  +     G K    D+ +P
Sbjct: 91  TMKNIKT---VNI------NFRPSSSVRPNLTSTRAGEKIEFLDLDAP 129


>gi|237716130|ref|ZP_04546611.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|294646322|ref|ZP_06723971.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294807511|ref|ZP_06766309.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229443777|gb|EEO49568.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|292638334|gb|EFF56703.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294445301|gb|EFG13970.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 159

 Score = 40.7 bits (95), Expect = 0.074,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 16/108 (14%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------VKQKGSR 62
           L  ++ ++  LS  D    +T L   +  +   G+++ I  F  F        V  K   
Sbjct: 31  LAYTMKEKSSLSLGDIQSVLTNLVEAMRTALFDGKSVNIHDFGVFSLSATTRGVDTKDEC 90

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSP 110
             +N++T   V I       F+ SS ++  +     G K    D+ +P
Sbjct: 91  TMKNIKT---VNI------NFRPSSSVRPNLTSTRAGEKIEFLDLDAP 129


>gi|289670424|ref|ZP_06491499.1| histone-like protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 141

 Score = 40.7 bits (95), Expect = 0.074,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 18/105 (17%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH------- 55
           + ++++ LV  I++   L+ KD    + +L      S  +          TF        
Sbjct: 42  EALSKTGLVAHIAESTQLAPKDVRAVLASLEATAHASLSK------KGVGTFTIPGMLKL 95

Query: 56  ----VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
               V  K  R G N  T +E +I   +    K    L KR+ D 
Sbjct: 96  TTVHVPAKPKRKGINPFTKEE-QIFAAKSATTKVKPRLMKRLKDA 139


>gi|298483191|ref|ZP_07001371.1| DNA-binding protein [Bacteroides sp. D22]
 gi|298270708|gb|EFI12289.1| DNA-binding protein [Bacteroides sp. D22]
          Length = 216

 Score = 40.7 bits (95), Expect = 0.076,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 21/88 (23%)

Query: 13  SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL--QTN 70
            I +   L+  D T  +  L + +      G  + ++    F           +    T 
Sbjct: 43  RIQERCSLTETDVTAVLDALSHIMGQELAEGRQVHLNGIGYF-----------HPCLTTT 91

Query: 71  QEVKIDPRRVVV--------FKASSILK 90
           + V I  +R           F+A   LK
Sbjct: 92  EPVTISTKRKATKVKLKAIQFRADQTLK 119


>gi|255013382|ref|ZP_05285508.1| hypothetical protein B2_05700 [Bacteroides sp. 2_1_7]
          Length = 146

 Score = 40.7 bits (95), Expect = 0.079,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 39/122 (31%), Gaps = 22/122 (18%)

Query: 4   TITRS-------DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH- 55
            + +S       +L   I+     SR D    V  L   +     +GE +++     F  
Sbjct: 26  AVNKSTGTCDFEELCDQIADRSTASRGDVHVVVDGLLYILKQRLQKGETVQLGDLGHFQA 85

Query: 56  -VKQKGSRVGRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKCNKDDVTSP 110
            +  KG        T  E   +   +    +VF+ S  LK  +    +  K   D     
Sbjct: 86  VIGSKG--------TKLEADFNASLIKRPRIVFRPSVTLK-SVTGLAKFEKIVPDAPAPG 136

Query: 111 SG 112
            G
Sbjct: 137 GG 138


>gi|160885061|ref|ZP_02066064.1| hypothetical protein BACOVA_03058 [Bacteroides ovatus ATCC 8483]
 gi|156109411|gb|EDO11156.1| hypothetical protein BACOVA_03058 [Bacteroides ovatus ATCC 8483]
          Length = 216

 Score = 40.7 bits (95), Expect = 0.079,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 21/88 (23%)

Query: 13  SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL--QTN 70
            I +   L+  D T  +  L + +      G  + ++    F           +    T 
Sbjct: 43  RIQERCSLTETDVTAVLDALSHIMGQELAEGRQVHLNGIGYF-----------HPCLTTT 91

Query: 71  QEVKIDPRRVVV--------FKASSILK 90
           + V I  +R           F+A   LK
Sbjct: 92  EPVTISTKRKATKVKLKAIQFRADQTLK 119


>gi|85057662|ref|YP_456578.1| hypothetical protein AYWB_382 [Aster yellows witches'-broom
          phytoplasma AYWB]
 gi|84789767|gb|ABC65499.1| conserved hypothetical protein [Aster yellows witches'-broom
          phytoplasma AYWB]
          Length = 83

 Score = 40.7 bits (95), Expect = 0.079,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGS 61
          + + +L+KSI++    S   +  F  +  N +  +    E + +SS    F +K + +
Sbjct: 1  MNKKELIKSIAEVNKTSITQTEEFYNSFENALIKAITSNEEVVLSSKIGKFILKTRKA 58


>gi|294808482|ref|ZP_06767233.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294444309|gb|EFG13025.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 170

 Score = 40.7 bits (95), Expect = 0.080,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 26/63 (41%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           K +    + + I+++  L+  D    +  L + + +  +    +++    TF +  K +
Sbjct: 29 GKMVNTQKMAELIAEKASLTAGDVHNVIRNLMSVMREQLLNSRTVRLEGLGTFTMIAKAN 88

Query: 62 RVG 64
            G
Sbjct: 89 GKG 91


>gi|302345804|ref|YP_003814157.1| putative DNA-binding protein [Prevotella melaninogenica ATCC 25845]
 gi|302149278|gb|ADK95540.1| putative DNA-binding protein [Prevotella melaninogenica ATCC 25845]
          Length = 148

 Score = 40.3 bits (94), Expect = 0.081,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK--QKGSRVGRN 66
           D+ + I+    L+R D +  +    + +      G +I++ SF +  V    KG+     
Sbjct: 33  DIARDIAGRSSLTRGDVSNVLYNFIDCLPHYLRDGFSIQLGSFGSMRVTLASKGAETE-- 90

Query: 67  LQTNQEVKIDPRRVVVFKASSILKKRI 93
            +T +   I PR  VVF   + LK+ +
Sbjct: 91  -KTFKTETIKPR--VVFTPGTELKREL 114


>gi|237714065|ref|ZP_04544546.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262407116|ref|ZP_06083665.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229445889|gb|EEO51680.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355819|gb|EEZ04910.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 170

 Score = 40.3 bits (94), Expect = 0.081,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 26/63 (41%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           K +    + + I+++  L+  D    +  L + + +  +    +++    TF +  K +
Sbjct: 29 GKMVNTQKMAELIAEKASLTAGDVHNVIRNLMSVMREQLLNSRTVRLEGLGTFTMIAKAN 88

Query: 62 RVG 64
            G
Sbjct: 89 GKG 91


>gi|257468327|ref|ZP_05632423.1| hypothetical protein FulcA4_03249 [Fusobacterium ulcerans ATCC
          49185]
          Length = 93

 Score = 40.3 bits (94), Expect = 0.081,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 32/67 (47%)

Query: 23 KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVV 82
          K++   +  +FN I +     E +K  +  TF + ++  R   +  + +  +I P++ + 
Sbjct: 24 KEAREEIEEIFNLIAEVIAMDEEVKFKNKGTFSLLKRKKRRIGSPTSKEVREIVPKKTIK 83

Query: 83 FKASSIL 89
          F  S IL
Sbjct: 84 FVQSKIL 90


>gi|282879831|ref|ZP_06288559.1| putative DNA-binding protein [Prevotella timonensis CRIS 5C-B1]
 gi|281306296|gb|EFA98328.1| putative DNA-binding protein [Prevotella timonensis CRIS 5C-B1]
          Length = 154

 Score = 40.3 bits (94), Expect = 0.082,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 5  ITRSD-LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          +T +D L + I +   + R D+   ++ L   + D       +K++ F  F +  +
Sbjct: 30 MTEADVLAERIQRNCTVKRSDALAVLSELVEVMQDELQASHVVKLNGFGLFKIGMR 85


>gi|257469065|ref|ZP_05633159.1| hypothetical protein FulcA4_06955 [Fusobacterium ulcerans ATCC
          49185]
 gi|317063311|ref|ZP_07927796.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688987|gb|EFS25822.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 96

 Score = 40.3 bits (94), Expect = 0.082,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQE 72
          SI K   +S K++   +  +   I ++      +K  +   F ++ +  +  +N+ T ++
Sbjct: 14 SILKNQEVSLKEAEEDIEMMVESIAEAIAMENELKFKNKGKFILEDRKRKTVQNIHTGKK 73

Query: 73 VKIDPRRVVVFK 84
           K+ P+++  FK
Sbjct: 74 TKLPPKKI--FK 83


>gi|53714961|ref|YP_100953.1| putative non-specific DNA binding protein [Bacteroides fragilis
           YCH46]
 gi|253566064|ref|ZP_04843518.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265766813|ref|ZP_06094642.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52217826|dbj|BAD50419.1| putative non-specific DNA binding protein [Bacteroides fragilis
           YCH46]
 gi|251945168|gb|EES85606.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263253190|gb|EEZ24666.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301164399|emb|CBW23957.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 156

 Score = 40.3 bits (94), Expect = 0.084,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 16  KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKI 75
           ++  LS  D    +T     +  S   G+++ I  F  F +  +    G +     E + 
Sbjct: 44  EKSSLSSGDIKSVLTNFVEAMRTSLYNGQSVNIRDFGVFSLSART--KGVD----TEKEC 97

Query: 76  DPRRVVV----FKASSILKKRIMDDMRGRKC 102
             + ++     F+ SS ++  +     G K 
Sbjct: 98  TAKNIMAVKINFRPSSSVRPNLTSTRAGDKI 128


>gi|224536207|ref|ZP_03676746.1| hypothetical protein BACCELL_01074 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522175|gb|EEF91280.1| hypothetical protein BACCELL_01074 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 141

 Score = 40.3 bits (94), Expect = 0.085,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 17/95 (17%)

Query: 14  ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------VKQKGSRVGRN 66
           I K   +++ D    +  L  E+ ++   G  +K++ F+TF+       V        +N
Sbjct: 16  IQKSCAMTKGDVKHVIEALVEEVQENLANGNKVKLNQFSTFYMTFCCPGVATSAECTVKN 75

Query: 67  LQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
           ++    V I       F     LK  + +     +
Sbjct: 76  IK---RVNI------RFVPDKELK-LVNNSHAATR 100


>gi|298479626|ref|ZP_06997826.1| non-specific DNA binding protein [Bacteroides sp. D22]
 gi|298274016|gb|EFI15577.1| non-specific DNA binding protein [Bacteroides sp. D22]
          Length = 170

 Score = 40.3 bits (94), Expect = 0.086,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 26/63 (41%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           K +    + + I+++  L+  D    +  L + + +  +    +++    TF +  K +
Sbjct: 29 GKMVNTQKMAELIAEKASLTAGDVHNVIRNLMSVMREQLLNSRTVRLEGLGTFTMIAKAN 88

Query: 62 RVG 64
            G
Sbjct: 89 GKG 91


>gi|332530366|ref|ZP_08406311.1| histone family protein DNA-binding protein [Hylemonella gracilis
           ATCC 19624]
 gi|332040177|gb|EGI76558.1| histone family protein DNA-binding protein [Hylemonella gracilis
           ATCC 19624]
          Length = 106

 Score = 40.3 bits (94), Expect = 0.086,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 8/97 (8%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSF---ATFHVKQ 58
           T T+  L   ++++ G+  K     +  L   +  +   +G     +          V  
Sbjct: 8   TFTKGALASHLAEQAGVEPKAVKAVLAALEATMLGAINKKGAGEFTLPGLLKIGVQKVPA 67

Query: 59  KGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92
           K  R G N  T +E           +  +A   LK  
Sbjct: 68  KPKRKGINPFTKEEQVFAAKPATVRIKARALKKLKDA 104


>gi|293373582|ref|ZP_06619930.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|299148373|ref|ZP_07041435.1| putative DNA-binding protein [Bacteroides sp. 3_1_23]
 gi|292631407|gb|EFF50037.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|298513134|gb|EFI37021.1| putative DNA-binding protein [Bacteroides sp. 3_1_23]
          Length = 158

 Score = 40.3 bits (94), Expect = 0.086,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 19/50 (38%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          + +  +V  I+    L+  D    +  L   I  +   G  +++    +F
Sbjct: 32 MKQKQIVDQIADRCTLTGSDIKAVLDALMVVIKRNLANGSPVRLGDLGSF 81


>gi|262407742|ref|ZP_06084290.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|298480883|ref|ZP_06999078.1| non-specific DNA binding protein [Bacteroides sp. D22]
 gi|262354550|gb|EEZ03642.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|298272906|gb|EFI14472.1| non-specific DNA binding protein [Bacteroides sp. D22]
          Length = 166

 Score = 40.3 bits (94), Expect = 0.089,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 16/108 (14%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------VKQKGSR 62
           L  ++ ++  LS  D    +T L   +  +   G+++ I  F  F        V  K   
Sbjct: 38  LAYTMKEKSSLSLGDIQSVLTNLVEAMRTALFDGKSVNIHDFGVFSLSATTRGVDTKDEC 97

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSP 110
             +N++T   V I       F+ SS ++  +     G K    D+ +P
Sbjct: 98  TMKNIKT---VNI------NFRPSSSVRPNLTSTRAGEKIEFLDLDAP 136


>gi|253569185|ref|ZP_04846595.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251841204|gb|EES69285.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 212

 Score = 40.3 bits (94), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L K I +   L+  D    + +L + +      GE + +     F VK        + + 
Sbjct: 37  LAKEIQQATSLTEGDVKAVLESLSHFMGSRLREGERVHLDGIGYFQVKLNSLEPITSPKL 96

Query: 70  NQ-EVKIDPRRVVVFKASSILKKRI 93
              ++K+     + FKA   L+  +
Sbjct: 97  KANQMKLKAN--IGFKADKKLRSSV 119


>gi|160882590|ref|ZP_02063593.1| hypothetical protein BACOVA_00543 [Bacteroides ovatus ATCC 8483]
 gi|156112034|gb|EDO13779.1| hypothetical protein BACOVA_00543 [Bacteroides ovatus ATCC 8483]
          Length = 171

 Score = 40.3 bits (94), Expect = 0.089,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 16/108 (14%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------VKQKGSR 62
           L  ++ ++  LS  D    +T L   +  +   G+++ I  F  F        V  K   
Sbjct: 38  LAYTMKEKSSLSLGDIQSVLTNLVEAMRTALFDGKSVNIHDFGVFSLSATTRGVDTKDEC 97

Query: 63  VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSP 110
             +N++T   V I       F+ SS ++  +     G K    D+ +P
Sbjct: 98  TMKNIKT---VNI------NFRPSSSVRPNLTSTRAGEKIEFLDLDAP 136


>gi|94152492|ref|YP_581899.1| histone-like bacterial DNA-binding protein (Bph2) [Cupriavidus
           metallidurans CH34]
 gi|93358862|gb|ABF12949.1| Histone-like bacterial DNA-binding protein (Bph2) [Cupriavidus
           metallidurans CH34]
 gi|222870016|gb|EEF07147.1| predicted protein [Populus trichocarpa]
          Length = 147

 Score = 40.3 bits (94), Expect = 0.089,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 8/98 (8%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ---- 58
           +T  +S L+  +  +  L +K     +  L N I  +  +  A + +    F V      
Sbjct: 48  ETFNKSSLLAHLIAQTELDKKTVQTVLAHLENTIVSAIHKKGAGEFTLPGLFKVAAIQVP 107

Query: 59  -KGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92
               R G+N  T  +           V  +    LK  
Sbjct: 108 ATKKRFGKNPFTGVDQWFAAKPASVKVKVRPLKKLKDA 145


>gi|237716546|ref|ZP_04547027.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405324|ref|ZP_06081874.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644626|ref|ZP_06722379.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294810174|ref|ZP_06768842.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229442529|gb|EEO48320.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356199|gb|EEZ05289.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640063|gb|EFF58328.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294442638|gb|EFG11437.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 156

 Score = 40.3 bits (94), Expect = 0.089,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 19/50 (38%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          + +  +V  I+    L+  D    +  L   I  +   G  +++    +F
Sbjct: 32 MKQKQIVDQIADRCTLTGSDIKAVLDALMVVIKRNLANGSPVRLGDLGSF 81


>gi|60682933|ref|YP_213077.1| hypothetical protein BF3473 [Bacteroides fragilis NCTC 9343]
 gi|60494367|emb|CAH09163.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
          Length = 156

 Score = 40.3 bits (94), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 16  KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKI 75
           ++  LS  D    +T     +  S   G+++ I  F  F +  +    G +     E + 
Sbjct: 44  EKSSLSLGDIKSVLTNFVEAMRTSLYNGQSVNIRDFGVFSLSART--KGVD----TEKEC 97

Query: 76  DPRRVVV----FKASSILKKRIMDDMRGRKC 102
             + ++     F+ SS ++  +     G K 
Sbjct: 98  TAKNIMAVKINFRPSSSVRPNLTSTRAGDKI 128


>gi|295085882|emb|CBK67405.1| DNA-binding protein, histone-like, putative [Bacteroides
          xylanisolvens XB1A]
          Length = 167

 Score = 40.3 bits (94), Expect = 0.092,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 8/71 (11%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          + L K I+    LS  D    +  L           E++ +  F TF +  K        
Sbjct: 34 TQLAKEIAAYSSLSTGDVKNTLDNLVTVAAQHLQASESVTLDGFGTFRMVMKS------- 86

Query: 68 QTNQEVKIDPR 78
             + V++  +
Sbjct: 87 -NGKGVELPEK 96


>gi|166711255|ref|ZP_02242462.1| Bacterial DNA-binding protein [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 141

 Score = 40.3 bits (94), Expect = 0.092,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 22/105 (20%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH------- 55
           + ++++ LV  I++   L+ KD    + +L      S  +          TF        
Sbjct: 42  EALSKTGLVAHIAESTQLAPKDVRAVLASLEATAHASLSK------KGVGTFTIPGMLKL 95

Query: 56  ----VKQKGSRVGRNLQTNQEVKI----DPRRVVVFKASSILKKR 92
               V  K  R G N  T +E +I         +  +    LK  
Sbjct: 96  TTVHVPAKPKRKGINPFTKEE-QIFAAKPATSKIKSRMMKRLKDA 139


>gi|84622954|ref|YP_450326.1| histone-like protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|122879099|ref|YP_200053.6| histone-like protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188577987|ref|YP_001914916.1| bacterial DNA-binding protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|84366894|dbj|BAE68052.1| histone-like protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188522439|gb|ACD60384.1| bacterial DNA-binding protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 141

 Score = 40.3 bits (94), Expect = 0.092,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 22/105 (20%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH------- 55
           + ++++ LV  I++   L+ KD    + +L      S  +          TF        
Sbjct: 42  EALSKTGLVAHIAESTQLAPKDVRAVLASLEATAHASLSK------KGVGTFTIPGMLKL 95

Query: 56  ----VKQKGSRVGRNLQTNQEVKI----DPRRVVVFKASSILKKR 92
               V  K  R G N  T +E +I         +  +    LK  
Sbjct: 96  TTVHVPAKPKRKGINPFTKEE-QIFAAKPATSKIKSRMMKRLKDA 139


>gi|295084979|emb|CBK66502.1| DNA-binding protein, histone-like, putative [Bacteroides
          xylanisolvens XB1A]
          Length = 208

 Score = 40.3 bits (94), Expect = 0.094,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 22/47 (46%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55
          +L++ I+   G +  D    +T +  E+      G+++K+    TF 
Sbjct: 34 ELIRQIASSSGFNVGDVEGVITQIGIEMAHQMAEGKSVKLDGIGTFS 80


>gi|237714092|ref|ZP_04544573.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262407144|ref|ZP_06083693.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645671|ref|ZP_06723359.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294808159|ref|ZP_06766926.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229445916|gb|EEO51707.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355847|gb|EEZ04938.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638984|gb|EFF57314.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294444619|gb|EFG13319.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 208

 Score = 40.3 bits (94), Expect = 0.094,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 22/47 (46%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55
          +L++ I+   G +  D    +T +  E+      G+++K+    TF 
Sbjct: 34 ELIRQIASSSGFNVGDVEGVITQIGIEMAHQMAEGKSVKLDGIGTFS 80


>gi|53712344|ref|YP_098336.1| hypothetical protein BF1052 [Bacteroides fragilis YCH46]
 gi|253563618|ref|ZP_04841075.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265762537|ref|ZP_06091105.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52215209|dbj|BAD47802.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|251947394|gb|EES87676.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263255145|gb|EEZ26491.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301162052|emb|CBW21596.1| conserved hypothetical protein (pseudogene) [Bacteroides fragilis
          638R]
          Length = 142

 Score = 40.3 bits (94), Expect = 0.094,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 14/47 (29%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
            L + +     LS  D    +  L   I      G  + I    TF
Sbjct: 37 KQLAEDLHDNSSLSAGDVLSVLEQLPKAIARHMKEGRTVTIRGLGTF 83


>gi|83952116|ref|ZP_00960848.1| DNA-binding protein HU, putative [Roseovarius nubinhibens ISM]
 gi|83837122|gb|EAP76419.1| DNA-binding protein HU, putative [Roseovarius nubinhibens ISM]
          Length = 190

 Score = 40.3 bits (94), Expect = 0.094,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 16/47 (34%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53
           + +L K  +   G+ +      +      I ++  +G  I +     
Sbjct: 106 KQELFKKTADRSGIKKNQVKPAIEAALEVIGEALAQGREINLPPLGK 152


>gi|293370020|ref|ZP_06616587.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|292634938|gb|EFF53460.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
          Length = 216

 Score = 40.3 bits (94), Expect = 0.095,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 21/88 (23%)

Query: 13  SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL--QTN 70
            I +   L+  D T  +  L + +      G  + +     F           +    T 
Sbjct: 43  RIQERCSLTETDVTAVLDALSHIMGQELAEGRQVHLDGIGYF-----------HPCLTTT 91

Query: 71  QEVKIDPRRVVV--------FKASSILK 90
           + V +D +R V         F+A   LK
Sbjct: 92  EPVTVDTKRKVTKVKLKAIQFRADQTLK 119


>gi|237713397|ref|ZP_04543878.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406769|ref|ZP_06083318.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646032|ref|ZP_06723697.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294810540|ref|ZP_06769193.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|299147744|ref|ZP_07040807.1| putative DNA-binding protein [Bacteroides sp. 3_1_23]
 gi|229446636|gb|EEO52427.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355472|gb|EEZ04563.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638603|gb|EFF56956.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294442304|gb|EFG11118.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|298513927|gb|EFI37813.1| putative DNA-binding protein [Bacteroides sp. 3_1_23]
          Length = 216

 Score = 40.3 bits (94), Expect = 0.095,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 21/88 (23%)

Query: 13  SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL--QTN 70
            I +   L+  D T  +  L + +      G  + +     F           +    T 
Sbjct: 43  RIQERCSLTETDVTAVLDALSHIMGQELAEGRQVHLDGIGYF-----------HPCLTTT 91

Query: 71  QEVKIDPRRVVV--------FKASSILK 90
           + V +D +R V         F+A   LK
Sbjct: 92  EPVTVDTKRKVTKVKLKAIQFRADQTLK 119


>gi|295084660|emb|CBK66183.1| Bacterial DNA-binding protein. [Bacteroides xylanisolvens XB1A]
          Length = 216

 Score = 40.3 bits (94), Expect = 0.096,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 21/88 (23%)

Query: 13  SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL--QTN 70
            I +   L+  D T  +  L + +      G  + +     F           +    T 
Sbjct: 43  RIQERCSLTETDVTAVLDALSHIMGQELAEGRQVHLDGIGYF-----------HPCLTTT 91

Query: 71  QEVKIDPRRVVV--------FKASSILK 90
           + V +D +R V         F+A   LK
Sbjct: 92  EPVTVDTKRKVTKVKLKAIQFRADQTLK 119


>gi|224540648|ref|ZP_03681187.1| hypothetical protein BACCELL_05562 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224517720|gb|EEF86825.1| hypothetical protein BACCELL_05562 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 203

 Score = 40.3 bits (94), Expect = 0.096,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 9/113 (7%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           TIT  +  + + KE  +        +  + N + D    G  +++     F    K +R 
Sbjct: 31  TITAKEFQERLMKEQHMPHAMVVGIMQAISNALGDWLAEGYNVELDELGFFSTTLKCTRP 90

Query: 64  GRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKCNKDDVTSPSG 112
                  Q+  I    V    V F+ S   KK +   M   + +K        
Sbjct: 91  AI-----QKKDIRAESVRFETVKFRPSKAFKKYVRHQMELERIDKKASAKKPA 138


>gi|154490223|ref|ZP_02030484.1| hypothetical protein PARMER_00455 [Parabacteroides merdae ATCC
          43184]
 gi|154089115|gb|EDN88159.1| hypothetical protein PARMER_00455 [Parabacteroides merdae ATCC
          43184]
          Length = 168

 Score = 40.3 bits (94), Expect = 0.096,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 25/54 (46%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          +SK +T   L + ++ +  +SR D +  + ++   + ++   GE +       F
Sbjct: 28 VSKELTLKGLSQRVAAQTTVSRADVSAVLISVVENMIEALRDGEQVDFGELGKF 81


>gi|260172730|ref|ZP_05759142.1| putative non-specific DNA-binding protein [Bacteroides sp. D2]
 gi|315921020|ref|ZP_07917260.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694895|gb|EFS31730.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 167

 Score = 40.3 bits (94), Expect = 0.097,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 8/71 (11%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          + L K I+    LS  D    +  L           E++ +  F TF +  K        
Sbjct: 34 TQLAKEIAAYSSLSTGDVKNTLDNLVTVAAQHLQASESVTLDGFGTFRMVMKS------- 86

Query: 68 QTNQEVKIDPR 78
             + V++  +
Sbjct: 87 -NGKGVELPEK 96


>gi|298479601|ref|ZP_06997801.1| DNA-binding protein [Bacteroides sp. D22]
 gi|298273991|gb|EFI15552.1| DNA-binding protein [Bacteroides sp. D22]
          Length = 208

 Score = 40.3 bits (94), Expect = 0.098,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 22/47 (46%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55
          +L++ I+   G +  D    +T +  E+      G+++K+    TF 
Sbjct: 34 ELIRQIASSSGFNVGDVEGVITQIGIEMAHQMAEGKSVKLDGIGTFS 80


>gi|198274911|ref|ZP_03207443.1| hypothetical protein BACPLE_01070 [Bacteroides plebeius DSM 17135]
 gi|198272358|gb|EDY96627.1| hypothetical protein BACPLE_01070 [Bacteroides plebeius DSM 17135]
          Length = 198

 Score = 40.3 bits (94), Expect = 0.098,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 15/121 (12%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           +T  ++ ++I K+   S  D    +T L +E+ ++   G A+ +     F +  K +   
Sbjct: 31  VTTREIREAIRKKCTASPADVAAVITALNDELYENLSNGYAVHLEGIGYFSLSLKCA-PD 89

Query: 65  RNLQ--TNQEVKIDPRRVVVFKASSILKKR---------IMDDMRGRKCNKDDVTSPSGS 113
            N +   + +V++   R + F     L  R         + +     K ++++V      
Sbjct: 90  INPKYIKDDDVQV---RSIKFTPDKDLIDRFQSVYLERKVDEAHHSTKLDEEEVKKKLAE 146

Query: 114 Y 114
           Y
Sbjct: 147 Y 147


>gi|237716923|ref|ZP_04547404.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405692|ref|ZP_06082242.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643375|ref|ZP_06721194.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294810641|ref|ZP_06769291.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229442906|gb|EEO48697.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356567|gb|EEZ05657.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292641253|gb|EFF59452.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294442183|gb|EFG11000.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 167

 Score = 40.3 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 8/71 (11%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          + L K I+    LS  D    +  L           E++ +  F TF +  K        
Sbjct: 34 TQLAKEIAAYSSLSTGDVKNTLDNLVTVAAQHLQASESVTLDGFGTFRMVMKS------- 86

Query: 68 QTNQEVKIDPR 78
             + V++  +
Sbjct: 87 -NGKGVELPEK 96


>gi|126735586|ref|ZP_01751331.1| DNA-binding protein HU, putative [Roseobacter sp. CCS2]
 gi|126714773|gb|EBA11639.1| DNA-binding protein HU, putative [Roseobacter sp. CCS2]
          Length = 105

 Score = 40.3 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 19/52 (36%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          + +L+  +     L ++D    V    + I D+   G  I +       V +
Sbjct: 23 KPELLDEVVLRTNLKKRDVKPTVEAALSVIGDALRDGADINVPPLGKLRVVK 74


>gi|29348450|ref|NP_811953.1| hypothetical protein BT_3041 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|298385847|ref|ZP_06995404.1| DNA-binding protein [Bacteroides sp. 1_1_14]
 gi|29340354|gb|AAO78147.1| Histone-like bacterial DNA-binding protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298261075|gb|EFI03942.1| DNA-binding protein [Bacteroides sp. 1_1_14]
          Length = 212

 Score = 40.3 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L K I +   L+  D    + +L + +      GE + +     F VK        + + 
Sbjct: 37  LAKEIQQATSLTEGDVKAVLESLSHFMGSRLREGERVHLDGIGYFQVKLNSLEPITSPKL 96

Query: 70  NQ-EVKIDPRRVVVFKASSILKKRI 93
              ++K+     + FKA   L+  +
Sbjct: 97  KANQMKLKAN--IGFKADKKLRSSV 119


>gi|224539544|ref|ZP_03680083.1| hypothetical protein BACCELL_04449 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518825|gb|EEF87930.1| hypothetical protein BACCELL_04449 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 169

 Score = 40.3 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           + +++  + + + +     LS  D    V     ++ +  + G+ + I+    F +  K 
Sbjct: 30  LGQSVNLAFIAQKMQDRSSLSIGDIRSVVQNFVEKLKEQLLEGKTVNIAGLGVFMLAAKS 89

Query: 61  SRVGRNLQTNQEVKIDPRRV----VVFKASSILK 90
              G    +++   I  + V    + F+A+  LK
Sbjct: 90  --KG----SDKAEDITAKSVDSVRICFQANKELK 117


>gi|160884909|ref|ZP_02065912.1| hypothetical protein BACOVA_02899 [Bacteroides ovatus ATCC 8483]
 gi|156109944|gb|EDO11689.1| hypothetical protein BACOVA_02899 [Bacteroides ovatus ATCC 8483]
          Length = 172

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 8/71 (11%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
          + L K I+    LS  D    +  L           E++ +  F TF +  K        
Sbjct: 34 TQLAKEIAAYSSLSTGDVKNTLDNLVTVAAQHLQASESVTLDGFGTFRMVMKS------- 86

Query: 68 QTNQEVKIDPR 78
             + V++  +
Sbjct: 87 -NGKGVELPEK 96


>gi|260173920|ref|ZP_05760332.1| hypothetical protein BacD2_18782 [Bacteroides sp. D2]
 gi|315922185|ref|ZP_07918425.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696060|gb|EFS32895.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 208

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55
          DL++ I+   G +  D    +T +  E+      G+++K+    TF 
Sbjct: 34 DLIRQIASSSGFNVGDVEGVITQIGIEMAHQMAEGKSVKLDGIGTFS 80


>gi|237718053|ref|ZP_04548534.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229452694|gb|EEO58485.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 216

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 21/88 (23%)

Query: 13  SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL--QTN 70
            I +   L+  D T  +  L + +      G  + +     F           +    T 
Sbjct: 43  RIQERCSLTETDVTAVLDALSHIMGQELAEGRQVHLDGIGYF-----------HPCLTTT 91

Query: 71  QEVKIDPRRVVV--------FKASSILK 90
           + V +D +R V         F+A   LK
Sbjct: 92  EPVTVDTKRKVTKVKLKAIQFRADQTLK 119


>gi|330825850|ref|YP_004389153.1| histone family protein DNA-binding protein [Alicycliphilus
           denitrificans K601]
 gi|329311222|gb|AEB85637.1| histone family protein DNA-binding protein [Alicycliphilus
           denitrificans K601]
          Length = 134

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQ-- 58
           +T+T+S LV  ++++  +  K     +  L + +  S   +G  A  +       V++  
Sbjct: 35  ETLTKSALVAHLAEQSSVEPKAVKAVLAALESAVLGSVHKKGAGAFVLPGLLKIDVQKVP 94

Query: 59  -KGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92
            K  R G N  T +E           +  +A   LK  
Sbjct: 95  AKPKRKGINPFTKEEQVFAAKPATVRIKARALKKLKDA 132


>gi|157093127|gb|ABV22218.1| major basic nuclear protein [Karlodinium micrum]
          Length = 108

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 6/96 (6%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           K +T+  L K+++ E GL +K  +  + +L +       +     I        + K + 
Sbjct: 14  KAMTKGALAKALATEHGLKQKACSDVLNSLASIATKEVKKAGIFSIPGLCRIKTRTKPAT 73

Query: 63  VG--RNLQTNQEVKID---PRRVVVFKASSILKKRI 93
               RN    ++VK+     R +V    ++ LKK+I
Sbjct: 74  KAGVRN-VFGKDVKVKAKSARTIVKGYCAAALKKQI 108


>gi|325915087|ref|ZP_08177415.1| putative DNA-binding protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325538699|gb|EGD10367.1| putative DNA-binding protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 140

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 6/99 (6%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISS---FATFHVK 57
           + ++++ LV  I++   L+ KD    + TL +    S  +    +  +       + HV 
Sbjct: 41  EALSKTGLVAHIAETTQLAPKDVRAVLATLESAAHSSLSKKGAGSFTLPGMLKLTSVHVP 100

Query: 58  QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
            K  R G N  T +E     +    FK  + L K++ D 
Sbjct: 101 AKPKRKGINPFTKEEQTFAAKPA-SFKVKARLLKKLKDA 138


>gi|224538359|ref|ZP_03678898.1| hypothetical protein BACCELL_03250 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224519988|gb|EEF89093.1| hypothetical protein BACCELL_03250 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 161

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 6/62 (9%), Positives = 19/62 (30%), Gaps = 6/62 (9%)

Query: 1  MSKTITRS------DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          + K + +       D+   +++  G         +      I +    G ++ +    +F
Sbjct: 25 VGKKMQKKSGRTERDVAHRVAQRTGFHPGVVEAVLAATGEIIEEELSDGRSVTLRGIGSF 84

Query: 55 HV 56
            
Sbjct: 85 QT 86


>gi|226943961|ref|YP_002799034.1| histone-like protein [Azotobacter vinelandii DJ]
 gi|226718888|gb|ACO78059.1| histone-like protein [Azotobacter vinelandii DJ]
          Length = 40

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 18/39 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG 43
          + +S+L+ S++    L +  +T+ +  L   I      G
Sbjct: 1  MNKSELIASVANHGDLDKATATKVINALLETIAARTEGG 39


>gi|56130790|ref|YP_145693.1| hypothetical protein pMOL30_161 [Ralstonia metallidurans CH34]
 gi|56068780|emb|CAI11342.1| hypothetical protein [Cupriavidus metallidurans CH34]
          Length = 122

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 8/98 (8%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ---- 58
           +T  +S L+  +  +  L +K     +  L N I  +  +  A + +    F V      
Sbjct: 23  ETFNKSSLLAHLIAQTELDKKTVQTVLAHLENTIVSAIHKKGAGEFTLPGLFKVAAIQVP 82

Query: 59  -KGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92
               R G+N  T  +           V  +    LK  
Sbjct: 83  ATKKRFGKNPFTGVDQWFAAKPASVKVKVRPLKKLKDA 120


>gi|317480297|ref|ZP_07939399.1| hypothetical protein HMPREF1007_02516 [Bacteroides sp. 4_1_36]
 gi|316903538|gb|EFV25390.1| hypothetical protein HMPREF1007_02516 [Bacteroides sp. 4_1_36]
          Length = 212

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 24/61 (39%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T T+ + V+ I+    L +      +    +E+CD    G  +++     F    K  R
Sbjct: 30 RTYTQKEFVEHIATFQHLPKNVIGAALDACIDELCDLLANGNIVELGELGFFSTSLKCLR 89

Query: 63 V 63
           
Sbjct: 90 E 90


>gi|323345442|ref|ZP_08085665.1| hypothetical protein HMPREF0663_12201 [Prevotella oralis ATCC
          33269]
 gi|323093556|gb|EFZ36134.1| hypothetical protein HMPREF0663_12201 [Prevotella oralis ATCC
          33269]
          Length = 134

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + K ++ E  +S  D    +T L + + D   +G ++K+    TF++    ++ G
Sbjct: 11 QISKRLAAESTVSPADVIAVLTALGSVMADYMSQGHSVKLDGVGTFYLTATAAKNG 66


>gi|160888123|ref|ZP_02069126.1| hypothetical protein BACUNI_00531 [Bacteroides uniformis ATCC
          8492]
 gi|270295148|ref|ZP_06201349.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317478146|ref|ZP_07937321.1| hypothetical protein HMPREF1007_00437 [Bacteroides sp. 4_1_36]
 gi|156862434|gb|EDO55865.1| hypothetical protein BACUNI_00531 [Bacteroides uniformis ATCC
          8492]
 gi|270274395|gb|EFA20256.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316905744|gb|EFV27523.1| hypothetical protein HMPREF1007_00437 [Bacteroides sp. 4_1_36]
          Length = 162

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 19/50 (38%)

Query: 11 VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           K I++   LS  DS   +  L   +       E++ +    TF +  K 
Sbjct: 37 AKEIAELSSLSTGDSKNVIDNLVTVMTRHLQSSESVTLDGLGTFRLTMKS 86


>gi|21232189|ref|NP_638106.1| histone-like protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66767682|ref|YP_242444.1| histone-like protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188990799|ref|YP_001902809.1| Bacterial DNA-binding protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21113945|gb|AAM42030.1| histone-like protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66573014|gb|AAY48424.1| histone-like protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167732559|emb|CAP50753.1| Bacterial DNA-binding protein [Xanthomonas campestris pv.
           campestris]
          Length = 140

 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 22/105 (20%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF-------- 54
           + ++++ LV  I++   L+ KD    + +L      S  +          +F        
Sbjct: 41  EALSKTGLVAHIAETTQLAPKDVRAVLASLEATAHASLSK------KGVGSFVLPGMLKI 94

Query: 55  ---HVKQKGSRVGRNLQTNQEVKI----DPRRVVVFKASSILKKR 92
              +V  K  R G N  T +E ++         +  +A   LK  
Sbjct: 95  TSVNVPAKPKRKGINPFTKEE-QVFAARPATCKLKVRAMKRLKDA 138


>gi|315608791|ref|ZP_07883767.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315249485|gb|EFU29498.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 159

 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 22/48 (45%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
           L +++ +   L R D    ++ L   +  +   G+ +K+  F +F +
Sbjct: 31 QLAETMQRNCTLKRSDIIAVISELVETMQTALQNGQRVKLDKFGSFKI 78


>gi|237714764|ref|ZP_04545245.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406960|ref|ZP_06083509.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644148|ref|ZP_06721923.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294805713|ref|ZP_06764592.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229445089|gb|EEO50880.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355663|gb|EEZ04754.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640513|gb|EFF58756.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294447036|gb|EFG15624.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 199

 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 24/106 (22%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------V 56
           T+ + + +  + K  G+SR      +    NE  D    G  +++ +F  F        V
Sbjct: 30  TVDKEEFLDRVHKFTGISRSLLAGAMEAFANEARDLLADGWNVEMGNFGFFSTSLQCPPV 89

Query: 57  KQKGSRVGRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMR 98
           K K               I    V    + F+AS   KK + D MR
Sbjct: 90  KDKKE-------------IRAASVQMKNINFRASRPFKKEVGDKMR 122


>gi|29348338|ref|NP_811841.1| putative non-specific DNA-binding protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253569294|ref|ZP_04846704.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29340242|gb|AAO78035.1| putative non-specific DNA-binding protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251841313|gb|EES69394.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 172

 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           I  + L K I+    LS  D    +  L   +       E++ +    TF +    +R G
Sbjct: 32  INSAQLSKEIAAYSSLSPGDVKNTLDNLVTVMAQHLQSSESVSVDGLGTFRMVM-SAR-G 89

Query: 65  RNLQTNQEVKID-PRRVVVFKA 85
           R ++T  EV        V F+ 
Sbjct: 90  RGVETADEVSAAQATLTVRFQP 111


>gi|299147918|ref|ZP_07040981.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
 gi|298514101|gb|EFI37987.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
          Length = 199

 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 24/106 (22%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------V 56
           T+ + + +  + K  G+SR      +    NE  D    G  +++ +F  F        V
Sbjct: 30  TVDKEEFLDRVHKFTGISRSLLAGAMEAFANEARDLLADGWNVEMGNFGFFSTSLQCPPV 89

Query: 57  KQKGSRVGRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMR 98
           K K               I    V    + F+AS   KK + D MR
Sbjct: 90  KDKKE-------------IRAASVQMKNINFRASRPFKKEVGDKMR 122


>gi|317478530|ref|ZP_07937688.1| hypothetical protein HMPREF1007_00804 [Bacteroides sp. 4_1_36]
 gi|316905283|gb|EFV27079.1| hypothetical protein HMPREF1007_00804 [Bacteroides sp. 4_1_36]
          Length = 207

 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 17/93 (18%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           +L + I     L+  D T  +  + + +      G  + +     F V            
Sbjct: 37  ELRRDIQARCSLTETDVTAVLDAVSHVMGRELAEGRQVHLDGIGYFRVSLT--------- 87

Query: 69  TNQEVKIDPRRV--------VVFKASSILKKRI 93
           T + V    +R         V F+A   LK  I
Sbjct: 88  TTEPVVAATKRKLTKVKMAGVKFRADQKLKNEI 120


>gi|323345042|ref|ZP_08085266.1| hypothetical protein HMPREF0663_11802 [Prevotella oralis ATCC
          33269]
 gi|323094312|gb|EFZ36889.1| hypothetical protein HMPREF0663_11802 [Prevotella oralis ATCC
          33269]
          Length = 153

 Score = 39.9 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          + L + I +   + R D    +T L   + D      A+K++ F  F V
Sbjct: 34 AALAEKIERNCTVKRSDVVAVLTELIEVMRDELQASHAVKLNGFGIFRV 82


>gi|294507600|ref|YP_003571658.1| hypothetical protein SRM_01785 [Salinibacter ruber M8]
 gi|294343928|emb|CBH24706.1| hypothetical protein SRM_01785 [Salinibacter ruber M8]
          Length = 278

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/107 (12%), Positives = 36/107 (33%), Gaps = 24/107 (22%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           ++  +++   +        ++TL  E+   A   + +++S   TF               
Sbjct: 5   IIPLLAERLDIPEDQVRPLLSTLVEELRQRAAS-DGVQLSGLGTFR-------------- 49

Query: 70  NQEVKIDPRRVVVFKASSILKKRIM---DDMRGRKCNKDDVTSPSGS 113
                 +    + F  S  L++R+    + +     + +    PS +
Sbjct: 50  ------EEGDALTFDPSPALQRRVNRPYEGLSAESLSPEAEPDPSAA 90


>gi|325919602|ref|ZP_08181614.1| putative DNA-binding protein [Xanthomonas gardneri ATCC 19865]
 gi|325549938|gb|EGD20780.1| putative DNA-binding protein [Xanthomonas gardneri ATCC 19865]
          Length = 127

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 6/99 (6%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISS---FATFHVK 57
           + ++++ LV  I++   L+ KD    + TL +    S  +    +  +       + HV 
Sbjct: 28  EALSKTGLVAHIAESTQLAPKDVRAVLATLESVAHSSLSKKGAGSFTLPGMLKLTSVHVP 87

Query: 58  QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
            K  R G N  T +E     +    FK  + L K++ D 
Sbjct: 88  AKPKRKGINPFTKEEQTFAAKPA-SFKVKARLLKKLKDA 125


>gi|288926742|ref|ZP_06420653.1| DNA-binding protein [Prevotella buccae D17]
 gi|288336472|gb|EFC74847.1| DNA-binding protein [Prevotella buccae D17]
          Length = 163

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 22/48 (45%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
           L +++ +   L R D    ++ L   +  +   G+ +K+  F +F +
Sbjct: 35 QLAETMQRNCTLKRSDIIAVISELVETMQTALQNGQRVKLDKFGSFKI 82


>gi|260575010|ref|ZP_05843011.1| alginate regulatory protein AlgP [Rhodobacter sp. SW2]
 gi|259022632|gb|EEW25927.1| alginate regulatory protein AlgP [Rhodobacter sp. SW2]
          Length = 157

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 8   SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
            DLV  + K  G  +K     V      + D+  +GE + +            +RVGR
Sbjct: 69  KDLVDRVVKATGGKKKGIKEIVVATLASLGDALTKGEDLNLPPLG-------KARVGR 119


>gi|281420928|ref|ZP_06251927.1| putative DNA-binding protein [Prevotella copri DSM 18205]
 gi|281405220|gb|EFB35900.1| putative DNA-binding protein [Prevotella copri DSM 18205]
          Length = 175

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 17/91 (18%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T  ++   I+ E   +  D    +      + ++  +G  I++  F   +++      
Sbjct: 32  TLTTEEVANQIAVESTATPADVKAVLDRYAYYVKENLKKGYDIELLGFGKLYIRF----- 86

Query: 64  GRNLQTNQEVKIDPR--------RVVVFKAS 86
                T + V+ + +         V  F+ S
Sbjct: 87  ----ITGKAVEDESKANAKLVKSLVPAFRPS 113


>gi|330893673|gb|EGH26334.1| single-stranded binding protein [Pseudomonas syringae pv. mori
          str. 301020]
          Length = 55

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 19/53 (35%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
           +T+  LV  I++     +  + + +  L   + D    G  I +       V
Sbjct: 2  ALTKDQLVVGIAEAIDAPKTTALKALEQLGQIVADQLESGAEITLPGIGKLKV 54


>gi|295084777|emb|CBK66300.1| DNA-binding protein, histone-like, putative [Bacteroides
           xylanisolvens XB1A]
          Length = 202

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 10/99 (10%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
            +VK I++    +  D       + N+I +  V G  +++ +   F  K K +R   + +
Sbjct: 36  QIVKEIAQASSFTPADIEGVQLAIENKISEYLVSGHHVQLGNLGYFSAKLK-ARPVMDAK 94

Query: 69  TNQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKCN 103
                +I  + +    V F+ SS  +K++   +   K  
Sbjct: 95  -----EIHAQSIYFDNVNFRPSSSFRKKVRGFVEKAKSG 128


>gi|160891814|ref|ZP_02072817.1| hypothetical protein BACUNI_04271 [Bacteroides uniformis ATCC 8492]
 gi|156858292|gb|EDO51723.1| hypothetical protein BACUNI_04271 [Bacteroides uniformis ATCC 8492]
          Length = 255

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 24/61 (39%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T T+ + V+ I+    L +      +    +E+CD    G  +++     F    K  R
Sbjct: 73  RTYTQKEFVEHIATFQHLPKNVIGAALDACIDELCDLLANGNIVELGELGFFSTSLKCLR 132

Query: 63  V 63
            
Sbjct: 133 E 133


>gi|222111316|ref|YP_002553580.1| histone family protein DNA-binding protein [Acidovorax ebreus TPSY]
 gi|221730760|gb|ACM33580.1| histone family protein DNA-binding protein [Acidovorax ebreus TPSY]
          Length = 134

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQ-- 58
           +T+T+S LV  ++++  +  K     +  L + +  S   +G  A  +       V++  
Sbjct: 35  ETLTKSALVAHLAEQSSVEPKAVKAVLAALESAVLGSVHKKGAGAFVLPGLLKIDVQKVP 94

Query: 59  -KGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92
            K  R G N  T +E           +  +A   LK  
Sbjct: 95  AKPKRKGINPFTKEEQVFAAKPATVRIKARALKRLKDA 132


>gi|255691380|ref|ZP_05415055.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565]
 gi|260623024|gb|EEX45895.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565]
          Length = 200

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 24/106 (22%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------V 56
           T+ + + +  + K  G+SR      +    NE  D    G  +++ +F  F        V
Sbjct: 30  TVDKEEFLDRVHKFTGISRSLLAGAMEAFANEARDLLADGWNVEMGNFGFFSTSLQCPPV 89

Query: 57  KQKGSRVGRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMR 98
           K K               I    V    + F+AS   KK + D MR
Sbjct: 90  KDKKE-------------IRAASVQMKNINFRASRPFKKEVGDKMR 122


>gi|270296495|ref|ZP_06202695.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273899|gb|EFA19761.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 255

 Score = 39.5 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 24/61 (39%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
           +T T+ + V+ I+    L +      +    +E+CD    G  +++     F    K  R
Sbjct: 73  RTYTQKEFVEHIATFQHLPKNVIGAALDACIDELCDLLANGNIVELGELGFFSTSLKCLR 132

Query: 63  V 63
            
Sbjct: 133 E 133


>gi|167762302|ref|ZP_02434429.1| hypothetical protein BACSTE_00655 [Bacteroides stercoris ATCC
          43183]
 gi|167699945|gb|EDS16524.1| hypothetical protein BACSTE_00655 [Bacteroides stercoris ATCC
          43183]
          Length = 206

 Score = 39.5 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 23/57 (40%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
          +T T+ + V+ ++    L +      +    +E+CD    G  +++     F    K
Sbjct: 30 ETYTQKEFVEHVAMFQHLPKNIIGAALDACIDELCDLLASGNIVELGELGFFSTSLK 86


>gi|295084954|emb|CBK66477.1| DNA-binding protein, histone-like, putative [Bacteroides
          xylanisolvens XB1A]
          Length = 170

 Score = 39.5 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 26/62 (41%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          K +    + + I+++  L+  D    +  L + + +  +    +++    TF +  K + 
Sbjct: 30 KMVNTQKMAELIAEKASLTAGDVHNVIRNLMSVMREQLLNSRTVRLEGLGTFTMIAKANG 89

Query: 63 VG 64
           G
Sbjct: 90 KG 91


>gi|323345365|ref|ZP_08085588.1| hypothetical protein HMPREF0663_12124 [Prevotella oralis ATCC
          33269]
 gi|323345381|ref|ZP_08085604.1| hypothetical protein HMPREF0663_12140 [Prevotella oralis ATCC
          33269]
 gi|323345553|ref|ZP_08085776.1| hypothetical protein HMPREF0663_12312 [Prevotella oralis ATCC
          33269]
 gi|323093479|gb|EFZ36057.1| hypothetical protein HMPREF0663_12124 [Prevotella oralis ATCC
          33269]
 gi|323093495|gb|EFZ36073.1| hypothetical protein HMPREF0663_12140 [Prevotella oralis ATCC
          33269]
 gi|323093667|gb|EFZ36245.1| hypothetical protein HMPREF0663_12312 [Prevotella oralis ATCC
          33269]
          Length = 147

 Score = 39.5 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 2/55 (3%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV--KQKGS 61
          ++ + I       + D    +  + N        G+ + +  F  F V  K K +
Sbjct: 35 EISQEIQDNTTAKQADVYVVLKEMINVFRRHLQNGDRVVLEGFGAFKVGLKSKPA 89


>gi|37542939|gb|AAL61531.1| major basic nuclear protein [Pfiesteria piscicida]
 gi|112253253|gb|ABI14214.1| major basic nuclear protein [Pfiesteria piscicida]
 gi|112253255|gb|ABI14215.1| major basic nuclear protein [Pfiesteria piscicida]
 gi|112253263|gb|ABI14219.1| major basic nuclear protein [Pfiesteria piscicida]
          Length = 112

 Score = 39.5 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            K+IT+  L  +IS E  L + D ++ +T L   +     +   + I   A    + K +
Sbjct: 17  GKSITKGGLADAISGETELKKSDCSKVLTALAEVVAKEVKKTGKVIIPGIARIVTRTKPA 76

Query: 62  -RVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
            + G+     + V +     R VV     + +K+ +
Sbjct: 77  TKAGKREMFGKVVVVKARPARTVVKAFPVAAIKQAV 112


>gi|317474337|ref|ZP_07933613.1| hypothetical protein HMPREF1016_00592 [Bacteroides eggerthii
          1_2_48FAA]
 gi|316909647|gb|EFV31325.1| hypothetical protein HMPREF1016_00592 [Bacteroides eggerthii
          1_2_48FAA]
          Length = 165

 Score = 39.1 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          + + I +  G+S +D    VT L   I      G+++K+     F
Sbjct: 40 IAQEIEELGGMSAEDVEHVVTALVRNIKRKLTDGDSVKLDGLGVF 84


>gi|295700076|ref|YP_003607969.1| histone family protein DNA-binding protein [Burkholderia sp.
           CCGE1002]
 gi|295439289|gb|ADG18458.1| histone family protein DNA-binding protein [Burkholderia sp.
           CCGE1002]
          Length = 150

 Score = 39.1 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVK---Q 58
           T T++ L   I++   +  K +   +  L + I  +   +G     +S      V+    
Sbjct: 51  TFTKASLAAHIAERAAVEPKTAKAVLAALEDTILGTVHKKGAGEFTLSGLLKIVVQAVPA 110

Query: 59  KGSRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92
           K  R G++  T +E     +     +  +A   LK  
Sbjct: 111 KKKRFGKDPFTGEERWFPAKPASVRIKARALKKLKDA 147


>gi|332295212|ref|YP_004437135.1| hypothetical protein Thena_0358 [Thermodesulfobium narugense DSM
          14796]
 gi|332178315|gb|AEE14004.1| hypothetical protein Thena_0358 [Thermodesulfobium narugense DSM
          14796]
          Length = 143

 Score = 39.1 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 9  DLVKSIS--KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          DLV+ IS  +E G+S+    R + T    I +  + G+ ++I    TF+++Q
Sbjct: 8  DLVRDISNEEEIGISK--VRRIIATFLASIKNQVLLGKRVRIKGLGTFYLQQ 57


>gi|329956215|ref|ZP_08296895.1| putative DNA-binding protein [Bacteroides clarus YIT 12056]
 gi|328524689|gb|EGF51750.1| putative DNA-binding protein [Bacteroides clarus YIT 12056]
          Length = 131

 Score = 39.1 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 23/51 (45%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          T+   DL ++IS++  ++  D    + +L   +      G ++ +    +F
Sbjct: 26 TVNTQDLGEAISRKCTVTPADVHAVIRSLPEVMSFFMENGNSVHLDGLGSF 76


>gi|319901326|ref|YP_004161054.1| hypothetical protein Bache_1463 [Bacteroides helcogenes P 36-108]
 gi|319416357|gb|ADV43468.1| hypothetical protein Bache_1463 [Bacteroides helcogenes P 36-108]
          Length = 203

 Score = 39.1 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 9/98 (9%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           TIT  +L++  SK  G         + ++F+ +     +G  +++  F  F  K K +R+
Sbjct: 31  TITAKELLEYTSKCSGFKVGAMDGMLMSIFDGMVHWLNQGFRVELGEFGYFSGKIKANRL 90

Query: 64  GRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDM 97
                  ++  I    +    V F+ S+ LKK +  ++
Sbjct: 91  V-----KKKTDIRSGSIHFGDVNFRPSAKLKKALDGEL 123


>gi|257469437|ref|ZP_05633529.1| hypothetical protein FulcA4_08873 [Fusobacterium ulcerans ATCC
          49185]
 gi|317063681|ref|ZP_07928166.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689357|gb|EFS26192.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 96

 Score = 39.1 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 24/69 (34%)

Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80
          S ++    +   +N +  +    + +    +  F  K+   R        +    +PR  
Sbjct: 18 SHREVREKIELFWNVLLKALEEDKKVTFKEWGVFERKEMKPRKVLVPMWEKPTYTEPREA 77

Query: 81 VVFKASSIL 89
          + F+A   L
Sbjct: 78 IKFRAGKGL 86


>gi|253565782|ref|ZP_04843237.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265764156|ref|ZP_06092724.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|251946061|gb|EES86468.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263256764|gb|EEZ28110.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301163495|emb|CBW23046.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 159

 Score = 39.1 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 17/45 (37%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          L + I     L+  D    +  L  ++     +G  +KI    TF
Sbjct: 40 LAEDIQTNCALTTGDVKHTIEALVEQLRKVLTQGNKVKIEGLGTF 84


>gi|330988301|gb|EGH86404.1| HU family DNA-binding protein [Pseudomonas syringae pv.
          lachrymans str. M301315]
          Length = 48

 Score = 39.1 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 7/47 (14%), Positives = 17/47 (36%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS 50
           +T+  L+  I++     +  +   +  L   + D    G  I +  
Sbjct: 2  ALTKDQLIADIAEAIDAPKTTARNALEQLGQIVADQLENGVEITLPG 48


>gi|257470013|ref|ZP_05634105.1| hypothetical protein FulcA4_11778 [Fusobacterium ulcerans ATCC
          49185]
 gi|317064238|ref|ZP_07928723.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689914|gb|EFS26749.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 96

 Score = 39.1 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 25/69 (36%)

Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80
          S K+    +   ++ +  +    + +    +  F  ++  SR  +           P+ V
Sbjct: 18 SHKEVKEKIDLFWDALLKALEEDKKVVFKDWGVFEKREIKSRKIKVPTLEGARYTKPKEV 77

Query: 81 VVFKASSIL 89
          + F+A   L
Sbjct: 78 IKFRAGKGL 86


>gi|260174297|ref|ZP_05760709.1| hypothetical protein BacD2_20736 [Bacteroides sp. D2]
 gi|315922565|ref|ZP_07918805.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696440|gb|EFS33275.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 209

 Score = 39.1 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 21/88 (23%)

Query: 13  SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL--QTN 70
            I +   L+  D +  +  L + +      G  + +     F           +    T 
Sbjct: 43  RIQERCSLTETDVSAVLDALSHIMGQELAEGRQVHLDGIGYF-----------HPCLTTT 91

Query: 71  QEVKIDPRRVVV--------FKASSILK 90
           + V I  +R           F+A   LK
Sbjct: 92  EPVTIGTKRKATKVKLKAIQFRADQTLK 119


>gi|255011111|ref|ZP_05283237.1| hypothetical protein Bfra3_18362 [Bacteroides fragilis 3_1_12]
 gi|313148921|ref|ZP_07811114.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137688|gb|EFR55048.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 156

 Score = 39.1 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 10/91 (10%)

Query: 16  KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKI 75
           ++  LS  D    +T     +  S   G+++ I  F  F +  +    G +     E   
Sbjct: 44  EKSSLSLGDIKSVLTNFVEAMRTSLYNGQSVNIRDFGVFSLSART--KGVD----AEKDC 97

Query: 76  DPRRVVV----FKASSILKKRIMDDMRGRKC 102
             + ++     F+ SS ++  +     G + 
Sbjct: 98  TAKNIMAVKINFRPSSSVRPNLTSTRAGDRI 128


>gi|255611551|ref|XP_002539319.1| conserved hypothetical protein [Ricinus communis]
 gi|223507189|gb|EEF23063.1| conserved hypothetical protein [Ricinus communis]
          Length = 78

 Score = 39.1 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFN 34
            T+TR+DL +++ +E GL+R+D    V    +
Sbjct: 45 GSTLTRADLCEAVHEEVGLTRQDCAGLVERTLD 77


>gi|298479855|ref|ZP_06998055.1| DNA-binding protein [Bacteroides sp. D22]
 gi|298274245|gb|EFI15806.1| DNA-binding protein [Bacteroides sp. D22]
          Length = 236

 Score = 39.1 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 10/99 (10%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
            +VK I++    +  D       + N+I +  V G  +++ +   F  K K +R   + +
Sbjct: 70  QIVKEIAQASSFTPADIEGVQLAIENKISEYLVSGHHVQLGNLGYFSAKLK-ARPVMDAK 128

Query: 69  TNQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKCN 103
                +I  + +    V F+ SS  +K++   +   K  
Sbjct: 129 -----EIHAQSIYFDNVNFRPSSSFRKKVRGFVEKAKSG 162


>gi|218132037|ref|ZP_03460841.1| hypothetical protein BACEGG_03662 [Bacteroides eggerthii DSM 20697]
 gi|317477198|ref|ZP_07936438.1| hypothetical protein HMPREF1016_03422 [Bacteroides eggerthii
           1_2_48FAA]
 gi|217985797|gb|EEC52137.1| hypothetical protein BACEGG_03662 [Bacteroides eggerthii DSM 20697]
 gi|316906634|gb|EFV28348.1| hypothetical protein HMPREF1016_03422 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 131

 Score = 39.1 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 16/95 (16%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+   DL ++IS+   ++  D    + +L   +      G ++ +    +F+ K   +  
Sbjct: 26  TVNTQDLGEAISRRCTVTPADVHAVIRSLPEVMSFFMENGNSVHLDGLGSFYYKLSCAGN 85

Query: 64  GRNLQTNQEVK-----------IDPRRVVVFKASS 87
           G +  T +EV            I  RR    K   
Sbjct: 86  GVD--TPEEVSREQVKAVRVQFIPERRK---KCGK 115


>gi|295084802|emb|CBK66325.1| hypothetical protein [Bacteroides xylanisolvens XB1A]
          Length = 199

 Score = 39.1 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 24/106 (22%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------V 56
           T+ + + +  + K  G+SR      +    NE  D    G  +++ +F  F        V
Sbjct: 30  TVDKEEFLDRVHKFTGISRSLLAGAMEAFANEARDLLADGWNVEMGNFGFFSTSLQCPPV 89

Query: 57  KQKGSRVGRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMR 98
           K K               I    V    + F+AS   KK + D MR
Sbjct: 90  KDKKE-------------IRAASVQMKNINFRASRPFKKEVGDKMR 122


>gi|218129855|ref|ZP_03458659.1| hypothetical protein BACEGG_01436 [Bacteroides eggerthii DSM
          20697]
 gi|217987965|gb|EEC54290.1| hypothetical protein BACEGG_01436 [Bacteroides eggerthii DSM
          20697]
          Length = 204

 Score = 39.1 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55
          TI + + +  + +  G+SR      +T   +E+ D  V G  +++     F 
Sbjct: 31 TIDKKEFIDRVHRFTGISRSVLEGSMTAFMDELRDCLVGGWTVELGELGYFS 82


>gi|29346117|ref|NP_809620.1| hypothetical protein BT_0707 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253568460|ref|ZP_04845871.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298385482|ref|ZP_06995040.1| non-specific DNA binding protein [Bacteroides sp. 1_1_14]
 gi|29338011|gb|AAO75814.1| putative non-specific DNA binding protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251842533|gb|EES70613.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298261623|gb|EFI04489.1| non-specific DNA binding protein [Bacteroides sp. 1_1_14]
          Length = 162

 Score = 39.1 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 16/102 (15%)

Query: 16  KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ-------KGSRVGRNLQ 68
            +  LS  D    +T     +  +   G+++ I  F  F +         K     +N++
Sbjct: 37  DKSSLSLGDIQSVLTNYVEAMRAALFDGKSVNIRDFGVFSLSAHTLGATTKEECTVKNIK 96

Query: 69  TNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSP 110
               ++I       F+ SS ++  +     G K    D+ +P
Sbjct: 97  ---SIQI------NFRPSSSVRPNLTSTRAGDKIEFLDLEAP 129


>gi|260593339|ref|ZP_05858797.1| putative DNA-binding protein [Prevotella veroralis F0319]
 gi|260534615|gb|EEX17232.1| putative DNA-binding protein [Prevotella veroralis F0319]
          Length = 198

 Score = 39.1 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 21/113 (18%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV----------KQK 59
           + K+I +   L+  D T  + +L  EI      G  + +     F V          +  
Sbjct: 35  ISKNIVQATSLTAGDITATILSLKEEITRELKDGNNVHLPGIGYFSVALKGDIYKDPRSH 94

Query: 60  GSRVGRNLQTNQEVKIDPRRVVVFKASSI-LKKRIMDDMRGRKCNKDDVTSPS 111
             R+ RN            R + F+     L++  M +++     ++  ++P+
Sbjct: 95  KPRL-RN---------AEVRTIKFRPDKEILQEMTMIEVKNVTEVEELASAPT 137


>gi|255009475|ref|ZP_05281601.1| hypothetical protein Bfra3_10072 [Bacteroides fragilis 3_1_12]
 gi|313147245|ref|ZP_07809438.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136012|gb|EFR53372.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 159

 Score = 39.1 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 17/45 (37%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          L + I     L+  D    +  L  ++     +G  +KI    TF
Sbjct: 40 LAEDIQTNCALTTGDVKHTIEALVEQLRKVLTQGNKVKIEGLGTF 84


>gi|237714806|ref|ZP_04545287.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406920|ref|ZP_06083469.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229445131|gb|EEO50922.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355623|gb|EEZ04714.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 236

 Score = 39.1 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 10/99 (10%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
            +VK I++    +  D       + N+I +  V G  +++ +   F  K K +R   + +
Sbjct: 70  QIVKEIAQASSFTPADIEGVQLAIENKISEYLVSGHHVQLGNLGYFSAKLK-ARPVMDAK 128

Query: 69  TNQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKCN 103
                +I  + +    V F+ SS  +K++   +   K  
Sbjct: 129 -----EIHAQSIYFDNVNFRPSSSFRKKVRGFVEKAKSG 162


>gi|160885247|ref|ZP_02066250.1| hypothetical protein BACOVA_03246 [Bacteroides ovatus ATCC 8483]
 gi|156109597|gb|EDO11342.1| hypothetical protein BACOVA_03246 [Bacteroides ovatus ATCC 8483]
          Length = 199

 Score = 39.1 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 24/106 (22%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------V 56
           T+ + + +  + K  G+SR      +    NE  D    G  +++ +F  F        V
Sbjct: 30  TVDKEEFLDRVHKFTGISRSLLAGAMEAFANEARDLLADGWNVEMGNFGFFSTSLQCPPV 89

Query: 57  KQKGSRVGRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMR 98
           K K               I    V    + F+AS   KK + D MR
Sbjct: 90  KDKKE-------------IRAASVQMKNINFRASRPFKKEVGDKMR 122


>gi|126664176|ref|ZP_01735169.1| hypothetical protein FBBAL38_11119 [Flavobacteria bacterium BAL38]
 gi|126623890|gb|EAZ94585.1| hypothetical protein FBBAL38_11119 [Flavobacteria bacterium BAL38]
          Length = 127

 Score = 39.1 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 20/96 (20%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           DL + ++    +SR D    +  L + I +S   G  +++ +  TF +            
Sbjct: 36  DLARIVASRTTMSRPDCFGVIMALSDVIGESLANGNIVRVDNLGTFQLN----------L 85

Query: 69  TNQEVK---------IDPRRVVVFKASSILKKRIMD 95
           T              I   ++  ++ S  LK R+  
Sbjct: 86  TGTPADSDAVIGKSNIKEAKI-NYRPSKELKNRMKK 120


>gi|255010367|ref|ZP_05282493.1| hypothetical protein Bfra3_14619 [Bacteroides fragilis 3_1_12]
 gi|313148166|ref|ZP_07810359.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136933|gb|EFR54293.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 148

 Score = 39.1 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 23  KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV--KQKGSRVGRNLQTNQEVKIDPRRV 80
            D    +  L +E+ D   RGE +++ +  TF V  + KG+      +  +   I   RV
Sbjct: 52  ADVVAVLKALEDEMVDGLSRGEIVRLGNIGTFQVGLRSKGAEK---PEDFKAANISKARV 108

Query: 81  VVFKASSILKKRIM 94
             F+   +L   + 
Sbjct: 109 -NFRPGPVLADAMK 121


>gi|150006528|ref|YP_001301272.1| hypothetical protein BVU_4048 [Bacteroides vulgatus ATCC 8482]
 gi|149934952|gb|ABR41650.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
          Length = 130

 Score = 39.1 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 15/34 (44%)

Query: 26 TRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
             +  +FN + +   +G+ + +    TF V  K
Sbjct: 53 EAVLEEVFNRLSEHLAQGDRVTLDGLGTFSVSLK 86


>gi|313148602|ref|ZP_07810795.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137369|gb|EFR54729.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 175

 Score = 39.1 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 7   RSDLVKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
           ++  + SI+KE      LS +D T  +     ++  S V G  +K+    TF++
Sbjct: 50  KTATIASIAKEIEITGALSAEDVTHVMQAFVRQLKKSLVEGNKVKVDGLGTFYI 103


>gi|299142978|ref|ZP_07036104.1| conserved hypothetical protein [Prevotella oris C735]
 gi|298575594|gb|EFI47474.1| conserved hypothetical protein [Prevotella oris C735]
          Length = 95

 Score = 39.1 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 1  MSKT--ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKI 48
          M+ T  ++ + +VK + K   +S  D    +  L  E+ ++   G  +++
Sbjct: 7  MAPTTPMSLAQIVKRVEKRLTVSSADVKAVLEALQFEVMEALENGNTVRL 56


>gi|255010800|ref|ZP_05282926.1| hypothetical protein Bfra3_16793 [Bacteroides fragilis 3_1_12]
          Length = 174

 Score = 39.1 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 7   RSDLVKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
           ++  + SI+KE      LS +D T  +     ++  S V G  +K+    TF++
Sbjct: 49  KTATIASIAKEIEITGALSAEDVTHVMQAFVRQLKKSLVEGNKVKVDGLGTFYI 102


>gi|237716758|ref|ZP_04547239.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|237720497|ref|ZP_04550978.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|262405533|ref|ZP_06082083.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|293371567|ref|ZP_06617985.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|294647598|ref|ZP_06725170.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294805828|ref|ZP_06764703.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229442741|gb|EEO48532.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229450248|gb|EEO56039.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|262356408|gb|EEZ05498.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292633515|gb|EFF52080.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|292637056|gb|EFF55502.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294446965|gb|EFG15557.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 158

 Score = 39.1 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 12/99 (12%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+   DL K +S    +        +  L + +  +  +G ++++  F  F       
Sbjct: 29  TNTVNFRDLCKEVSMFGMIPEGAVKHVIDALIDTLNTNLNKGLSVQLGDFGCF------- 81

Query: 62  RVGRNLQT-NQEVKIDP---RRV-VVFKASSILKKRIMD 95
           R G N ++ N+E  +D    RRV +VF      K  + +
Sbjct: 82  RPGMNCKSQNEEKDVDADTVRRVKIVFTPGYKFKDMLDN 120


>gi|319901832|ref|YP_004161560.1| hypothetical protein Bache_1997 [Bacteroides helcogenes P 36-108]
 gi|319416863|gb|ADV43974.1| hypothetical protein Bache_1997 [Bacteroides helcogenes P 36-108]
          Length = 216

 Score = 39.1 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 24/61 (39%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T TR + V+ ++    L +      +    +++CD    G  +++     F    K  R
Sbjct: 30 RTYTRKEFVEHVAMFQHLPKNMIGAALDACIDDLCDLLADGNIVELGELGFFSTSLKCLR 89

Query: 63 V 63
           
Sbjct: 90 E 90


>gi|237712275|ref|ZP_04542756.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229453596|gb|EEO59317.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 130

 Score = 39.1 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 15/34 (44%)

Query: 26 TRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
             +  +FN + +   +G+ + +    TF V  K
Sbjct: 53 EAVLEEVFNRLSEHLAQGDRVTLDGLGTFSVSLK 86


>gi|126726311|ref|ZP_01742152.1| hypothetical protein RB2150_01384 [Rhodobacterales bacterium
          HTCC2150]
 gi|126704174|gb|EBA03266.1| hypothetical protein RB2150_01384 [Rhodobacterales bacterium
          HTCC2150]
          Length = 89

 Score = 39.1 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 5/51 (9%), Positives = 20/51 (39%), Gaps = 6/51 (11%)

Query: 5  ITR------SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS 49
          + +      S+L + ++    + + D+        + + ++   GE+  + 
Sbjct: 1  MNKDKVVRQSELAERVAARTDIKKSDAKAASLAAIDVVIEALHNGESFVLP 51


>gi|319902380|ref|YP_004162108.1| DNA-binding protein [Bacteroides helcogenes P 36-108]
 gi|319417411|gb|ADV44522.1| DNA-binding protein [Bacteroides helcogenes P 36-108]
          Length = 212

 Score = 38.7 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 17/92 (18%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH----VKQKGSRVG 64
           D+ ++++     +R D    +  +  EI  S   G ++KI     F     ++Q   R  
Sbjct: 34  DIARTVAYATSFTRGDIKGLLQAVTEEIACSLGGGYSVKIEGLGIFTPALGLRQGKERE- 92

Query: 65  RNLQTNQEVKIDPRRV-------VVFKASSIL 89
               + +E     R         V FKA    
Sbjct: 93  ----SGEEGD-PKRNAASICLKDVNFKADKDF 119


>gi|189465478|ref|ZP_03014263.1| hypothetical protein BACINT_01831 [Bacteroides intestinalis DSM
           17393]
 gi|189437752|gb|EDV06737.1| hypothetical protein BACINT_01831 [Bacteroides intestinalis DSM
           17393]
          Length = 212

 Score = 38.7 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 7/88 (7%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           ++   I     L+  D +  +  L + + +    G  + +     FH   K    G  ++
Sbjct: 36  EIRHKIQARSSLTETDVSAVLDALSHIMGEELAEGRQVHLDGIGYFHPTLKCE-EGITME 94

Query: 69  TN---QEVKIDPRRVVVFKASSILKKRI 93
           T    ++VK+   + + F+A   LK  I
Sbjct: 95  TKRKNEKVKL---KGIKFRADQALKNEI 119


>gi|167566381|ref|ZP_02359297.1| histone family protein DNA-binding protein [Burkholderia
           oklahomensis EO147]
 gi|167573495|ref|ZP_02366369.1| histone family protein DNA-binding protein [Burkholderia
           oklahomensis C6786]
          Length = 117

 Score = 38.7 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFH---VKQKG 60
           T++ L   I++   +  K     +T L N I  S   +G     +          V  K 
Sbjct: 21  TKASLAAHIAERAEVELKAVKAVLTALENAILGSIHKKGAGEFTLPGLLKISAQAVPAKK 80

Query: 61  SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92
            R G++  T +E     +     V  +A   LK  
Sbjct: 81  KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 115


>gi|224535601|ref|ZP_03676140.1| hypothetical protein BACCELL_00465 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522792|gb|EEF91897.1| hypothetical protein BACCELL_00465 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 211

 Score = 38.7 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 17/89 (19%)

Query: 13  SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF--------HVKQKGSRVG 64
            I +   L+  D +  +  L + + +    G  + +     F         +K+   R  
Sbjct: 41  KIQERCSLTETDVSAVLDALSHAMGEELAEGRQVHLDGIGYFHPTLTCTEEIKEDTKRK- 99

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
               T   +     + + F+A   L+  I
Sbjct: 100 ---NTKVRL-----KGIKFRADQELRSEI 120


>gi|294647580|ref|ZP_06725155.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294808257|ref|ZP_06767018.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|292637072|gb|EFF55515.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294444541|gb|EFG13247.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 202

 Score = 38.7 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 10/99 (10%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
            +VK I++    +  D       + N+I +  V G  +++ +   F  K K +R   + +
Sbjct: 36  QIVKEIAQASSFTPADIEGVQLAIENKISEYLVSGHHVQLGNLGYFSAKLK-ARPVMDAK 94

Query: 69  TNQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKCN 103
                +I  + +    V F+ SS  +K++   +   K  
Sbjct: 95  -----EIHAQSIYFDNVNFRPSSSFRKKVRGFVEKAKSG 128


>gi|224536006|ref|ZP_03676545.1| hypothetical protein BACCELL_00870 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522373|gb|EEF91478.1| hypothetical protein BACCELL_00870 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 207

 Score = 38.7 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 15/90 (16%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF----HVKQKGSRVGR 65
           + K+++++   S+ D    +  L  E+     +G+++K+    TF     ++    R   
Sbjct: 35  IAKTLAQKSAFSKGDVVGLLQELGEELAYQMGQGKSVKLDGIGTFVPSLALRADKERE-- 92

Query: 66  NLQTNQEVKID--PRRVVV----FKASSIL 89
              T +E       R +VV    F+A   L
Sbjct: 93  ---TGEEDSTRRNARSIVVGSINFRAEKEL 119


>gi|294778854|ref|ZP_06744271.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
 gi|294447307|gb|EFG15890.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
          Length = 114

 Score = 38.7 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 15/34 (44%)

Query: 26 TRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
             +  +FN + +   +G+ + +    TF V  K
Sbjct: 37 EAVLEEVFNRLSEHLAQGDRVTLDGLGTFSVSLK 70


>gi|281422072|ref|ZP_06253071.1| putative DNA-binding protein [Prevotella copri DSM 18205]
 gi|281403861|gb|EFB34541.1| putative DNA-binding protein [Prevotella copri DSM 18205]
          Length = 175

 Score = 38.7 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 32/91 (35%), Gaps = 17/91 (18%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T+T  ++   I+ E   +  D    +      + ++  +G  I++  F    ++      
Sbjct: 32  TLTTEEVANQIAVESTATPADVKAVLDRYAYYVKENLKKGYDIELLGFGKLFIRF----- 86

Query: 64  GRNLQTNQEVKIDPR--------RVVVFKAS 86
                T + V+ + +         V  F+ S
Sbjct: 87  ----ITGKAVEDESKANAKLVKSLVPAFRPS 113


>gi|329956696|ref|ZP_08297269.1| putative DNA-binding protein [Bacteroides clarus YIT 12056]
 gi|328524068|gb|EGF51144.1| putative DNA-binding protein [Bacteroides clarus YIT 12056]
          Length = 161

 Score = 38.7 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 19/52 (36%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +V  + +   LS+ D    +      +  +   G ++ I  F  F +  +  
Sbjct: 38 MVYQMKENSSLSKGDIFSVIANFVECMRTNLYNGHSVNIRDFGVFSLSARTE 89


>gi|298480464|ref|ZP_06998661.1| DNA-binding protein [Bacteroides sp. D22]
 gi|298273285|gb|EFI14849.1| DNA-binding protein [Bacteroides sp. D22]
          Length = 158

 Score = 38.7 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 12/99 (12%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+   DL K +S    +        +  L + +  +  +G ++++  F  F       
Sbjct: 29  TNTVNFRDLCKEVSMFGMIPEGAVKHVIDALIDALNTNLNKGLSVQLGDFGCF------- 81

Query: 62  RVGRNLQT-NQEVKIDP---RRV-VVFKASSILKKRIMD 95
           R G N ++ N+E  +D    RRV +VF      K  + +
Sbjct: 82  RPGMNCKSQNEEKDVDADTVRRVKIVFTPGYKFKDMLDN 120


>gi|34540166|ref|NP_904645.1| histone-like family DNA-binding protein [Porphyromonas gingivalis
           W83]
 gi|34396478|gb|AAQ65544.1| DNA-binding protein, histone-like family [Porphyromonas gingivalis
           W83]
          Length = 171

 Score = 38.7 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L K I++E  L+  D    +  L N + +    G+ ++I    +F +   GS+   + + 
Sbjct: 38  LCKRIAEESALTSADVKGILDRLVNILSEELPNGKTVRIGELGSFRLSF-GSKQLDDPKN 96

Query: 70  NQEVKIDPRRVVVFKASSILK 90
               +I   R+V F  S+ LK
Sbjct: 97  FSVDQIQKHRLV-FIPSAELK 116


>gi|319900308|ref|YP_004160036.1| DNA-binding protein [Bacteroides helcogenes P 36-108]
 gi|319415339|gb|ADV42450.1| DNA-binding protein [Bacteroides helcogenes P 36-108]
          Length = 164

 Score = 38.7 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + + I++   LS  DS   +  L   +       E++ +    TF +  K ++ G
Sbjct: 34 TQVAREIAELSSLSTGDSKNVIDNLVTVLTRHLQSSESVTLDGLGTFRLVMKSTQNG 90


>gi|293372365|ref|ZP_06618749.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|292632548|gb|EFF51142.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
          Length = 212

 Score = 38.7 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L K I     L+  D    + +L + + D    G+++ +     F +K        + + 
Sbjct: 37  LAKEIQIATSLTEGDVKSVLESLSHFMGDRLREGQSVHLDGIGYFQIKLNSQEPITSPKL 96

Query: 70  NQEVKIDPRRVVVFKASSILKKRI 93
               +I  +  + FKA   LKK +
Sbjct: 97  KAN-QIKLKANISFKADVKLKKSV 119


>gi|212550313|ref|YP_002308633.1| hypothetical protein CFPG_P3-25 [Candidatus Azobacteroides
          pseudotrichonymphae genomovar. CFP2]
 gi|212549446|dbj|BAG84111.1| conserved hypothetical protein [Candidatus Azobacteroides
          pseudotrichonymphae genomovar. CFP2]
          Length = 139

 Score = 38.7 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 7/47 (14%), Positives = 22/47 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSF 51
          +   D+++++S   G S++   +      +E+    + G  + ++ F
Sbjct: 1  MNTVDIIRNVSLSSGFSQRAVKKVFRNCIDEMKQMLLTGHKVSLTGF 47


>gi|153806480|ref|ZP_01959148.1| hypothetical protein BACCAC_00744 [Bacteroides caccae ATCC 43185]
 gi|149131157|gb|EDM22363.1| hypothetical protein BACCAC_00744 [Bacteroides caccae ATCC 43185]
          Length = 159

 Score = 38.7 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 16/89 (17%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           ++ + IS    L+  D    +  L  ++      G+ +K+ +F TF ++           
Sbjct: 37  EMAEEISYATSLTDGDVLNVLRALIRQMKVQLAAGKIVKMENFGTFQIQVCS-------- 88

Query: 69  TNQEVK-------IDPRRVVVFKASSILK 90
           T  E K       I    +  F+   ++K
Sbjct: 89  TGTEAKKEFTASNITAAHI-QFRPGKMVK 116


>gi|257469062|ref|ZP_05633156.1| hypothetical protein FulcA4_06940 [Fusobacterium ulcerans ATCC
          49185]
 gi|317063308|ref|ZP_07927793.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688984|gb|EFS25819.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 106

 Score = 38.7 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 30/77 (38%)

Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80
          S K++   +   ++ I       + + +  F TF VK+  SR   N+  N       R  
Sbjct: 18 SIKEAKEKLKIFWDIIFAGIALEKKVTVKDFGTFEVKKLKSRKIYNIHKNSLYMTKERTA 77

Query: 81 VVFKASSILKKRIMDDM 97
          + F+  +   K +   +
Sbjct: 78 LKFRVKNEFMKIVNKKV 94


>gi|237717121|ref|ZP_04547602.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405891|ref|ZP_06082441.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647849|ref|ZP_06725401.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294806246|ref|ZP_06765093.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229443104|gb|EEO48895.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356766|gb|EEZ05856.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292636757|gb|EFF55223.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294446502|gb|EFG15122.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 212

 Score = 38.7 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L K I     L+  D    + +L + + D    G+++ +     F +K        + + 
Sbjct: 37  LAKEIQIATSLTEGDVKSVLESLSHFMGDRLREGQSVHLDGIGYFQIKLNSQEPITSPKL 96

Query: 70  NQEVKIDPRRVVVFKASSILKKRI 93
               +I  +  + FKA   LKK +
Sbjct: 97  KAN-QIKLKANISFKADVKLKKSV 119


>gi|237726416|ref|ZP_04556897.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229434942|gb|EEO45019.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 130

 Score = 38.7 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 15/34 (44%)

Query: 26 TRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
             +  +FN + +   +G+ + +    TF V  K
Sbjct: 53 EAVLEEVFNRLSEHLAQGDRVTLDGLGTFSVSLK 86


>gi|255010080|ref|ZP_05282206.1| hypothetical protein Bfra3_13150 [Bacteroides fragilis 3_1_12]
 gi|313147875|ref|ZP_07810068.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136642|gb|EFR54002.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 166

 Score = 38.7 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 17/52 (32%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          K +    +   +++   L   D    +T L + I      G  + I     F
Sbjct: 32 KPVNSVQIANQLAERSSLQNGDVLSALTQLSDIIAAHLKEGRTVSIDGLGNF 83


>gi|188995495|ref|YP_001929747.1| piutative DNA-binding protein histone-like family [Porphyromonas
           gingivalis ATCC 33277]
 gi|188595175|dbj|BAG34150.1| piutative DNA-binding protein histone-like family [Porphyromonas
           gingivalis ATCC 33277]
          Length = 172

 Score = 38.7 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L K I++E  L+  D    +  L N + +    G+ ++I    +F +   GS+   + + 
Sbjct: 38  LCKRIAEESALTSADVKGILDRLVNILSEELPNGKTVRIGELGSFRLSF-GSKQLDDPKN 96

Query: 70  NQEVKIDPRRVVVFKASSILK 90
               +I   R+V F  S+ LK
Sbjct: 97  FSVDQIQKHRLV-FIPSAELK 116


>gi|329955256|ref|ZP_08296213.1| putative DNA-binding protein [Bacteroides clarus YIT 12056]
 gi|328526255|gb|EGF53274.1| putative DNA-binding protein [Bacteroides clarus YIT 12056]
          Length = 165

 Score = 38.4 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          + + I +  G+S +D    VT L   I      G+++K+     F
Sbjct: 40 IAQEIEELGGMSAEDVEHVVTALVRNIKRKLTDGDSVKLDGLGVF 84


>gi|218259849|ref|ZP_03475402.1| hypothetical protein PRABACTJOHN_01061 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224885|gb|EEC97535.1| hypothetical protein PRABACTJOHN_01061 [Parabacteroides johnsonii
           DSM 18315]
          Length = 344

 Score = 38.4 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 23/45 (51%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA 45
           ++K+I R+DL K+++    +S+ ++ + V      +  +    + 
Sbjct: 232 LAKSIDRNDLAKALANNTDMSKAEADKAVKQYTEIMQKATAEADK 276


>gi|160885219|ref|ZP_02066222.1| hypothetical protein BACOVA_03217 [Bacteroides ovatus ATCC 8483]
 gi|156109569|gb|EDO11314.1| hypothetical protein BACOVA_03217 [Bacteroides ovatus ATCC 8483]
          Length = 202

 Score = 38.4 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 10/99 (10%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
            +VK I++    +  D       + N+I +  V G  +++ +   F  K K +R   + +
Sbjct: 36  QIVKEIAQASSFTPADIEGVQLAIENKISEYLVSGHHVQLGNLGYFSAKLK-ARPVMDAK 94

Query: 69  TNQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKCN 103
                +I  + +    V F+ SS  +K++   +   K  
Sbjct: 95  -----EIHAQSIYFDNVNFRPSSSFRKKVRGFVEKAKSG 128


>gi|224026942|ref|ZP_03645308.1| hypothetical protein BACCOPRO_03701 [Bacteroides coprophilus DSM
          18228]
 gi|224020178|gb|EEF78176.1| hypothetical protein BACCOPRO_03701 [Bacteroides coprophilus DSM
          18228]
          Length = 166

 Score = 38.4 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 7/57 (12%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 2  SKTITRSDLVKSISKEFGLSRK-DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          S+ +  +   + I+    + ++ D    +T   + + +  + G+ +++     F+V+
Sbjct: 28 SEVMNINQFAEHIASHGSVYKRSDVAAILTMAVDCLREQLLEGKKVELGDLGFFYVR 84


>gi|288803836|ref|ZP_06409262.1| putative non-specific DNA binding protein [Prevotella
           melaninogenica D18]
 gi|288333670|gb|EFC72119.1| putative non-specific DNA binding protein [Prevotella
           melaninogenica D18]
          Length = 149

 Score = 38.4 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 9/98 (9%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV--KQKGSRVGRN 66
           D+ + I+    L+R D +  +    + +      G +I++ +F +  V    KG+   + 
Sbjct: 33  DIARDIAGRSSLTRGDVSNVLYNFIDCLPHYLRDGFSIQLGNFGSMRVTLSSKGAETEKA 92

Query: 67  LQTNQEVKIDPRRVVVFKASSILKK--RIMDDMRGRKC 102
            +T     I PR  VVF   + LK+   +      RK 
Sbjct: 93  FKTE---TIKPR--VVFTPGTELKRELAVNSYESVRKT 125


>gi|160888495|ref|ZP_02069498.1| hypothetical protein BACUNI_00912 [Bacteroides uniformis ATCC 8492]
 gi|156862172|gb|EDO55603.1| hypothetical protein BACUNI_00912 [Bacteroides uniformis ATCC 8492]
          Length = 207

 Score = 38.4 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 11/90 (12%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF-----HVKQKGSRV 63
           +L + I +   L+  D +  +  L + + +    G  + +     F       +   +  
Sbjct: 37  ELRRRIQERSSLTETDVSAVLDALSHVMGEDLAEGRQVHLDGIGYFYPVLTSTEPVTAAT 96

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            R  +T  ++K+   + + F+A  +LK  I
Sbjct: 97  KR--KT-TKIKL---KGIKFRADQVLKNEI 120


>gi|209522053|ref|ZP_03270709.1| histone family protein DNA-binding protein [Burkholderia sp. H160]
 gi|209497516|gb|EDZ97715.1| histone family protein DNA-binding protein [Burkholderia sp. H160]
          Length = 150

 Score = 38.4 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVK---Q 58
           T T++ L   I++   +  K +   +  L + I  +   +G     +S      V+    
Sbjct: 51  TFTKASLAAHIAERAAVEPKTAKAVLAALEDTILGTVHKKGAGEFTLSGLLKIVVQAVPA 110

Query: 59  KGSRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92
           K  R G++  T +E     +     +  +A   LK  
Sbjct: 111 KKKRFGKDPFTGEERWFPAKPASVRIKARALKKLKDA 147


>gi|85707162|ref|ZP_01038249.1| DNA-binding protein HU, putative [Roseovarius sp. 217]
 gi|85668321|gb|EAQ23195.1| DNA-binding protein HU, putative [Roseovarius sp. 217]
          Length = 173

 Score = 38.4 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 4/52 (7%), Positives = 20/52 (38%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
           + +L+  +  +  + +K +   V  +   + ++   G  + +       + +
Sbjct: 77  KQELIDKVLGKGDIKKKYAKPVVEAVLEVLGEALAEGRELNLPPMGKIKINR 128


>gi|330988480|gb|EGH86583.1| single-stranded binding protein [Pseudomonas syringae pv.
          lachrymans str. M301315]
          Length = 48

 Score = 38.4 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 18/47 (38%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS 50
           +T+  LV  I++     +  + + +  L   + D    G  I +  
Sbjct: 2  ALTKDQLVAGIAEAIDAPKTTARKALEQLGQIVADQLESGAEITLPG 48


>gi|304384483|ref|ZP_07366878.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
 gi|304334426|gb|EFM00724.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
          Length = 138

 Score = 38.4 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 36/92 (39%), Gaps = 10/92 (10%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           D+   I+ E  L+  ++   +  +   +  + + G ++++ S+ +FH+            
Sbjct: 36  DVAIEIADETTLNPHEARMSIEQMKKVLIRNLLNGHSVRLGSWGSFHLTISSK-----PS 90

Query: 69  TNQEVKIDPRRVVV----FKASSILKKRIMDD 96
             ++ + D  +V      F     LK+ I   
Sbjct: 91  ATEK-EADASKVTKINIRFTPGKELKEAIAKA 121


>gi|270296294|ref|ZP_06202494.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273698|gb|EFA19560.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 206

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 8/113 (7%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           TI R + ++ +    GLSR      +    +E+ D    G  +++     F      +R 
Sbjct: 31  TIDRKEFIERVHLFTGLSRSLLEGAMAGFMDELRDCLANGWTVELGELGYFTPSLSCTRQ 90

Query: 64  GRNLQTNQEVKIDPR---RVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
                T+++         R + F+      K +   M+  +C     ++P+ S
Sbjct: 91  A----TDKKELRAASIALRGLNFRLGREFYKDLKGKMQLERC-PQSTSAPASS 138


>gi|42560762|ref|NP_975213.1| hypothetical protein MSC_0210 [Mycoplasma mycoides subsp.
          mycoides SC str. PG1]
 gi|42492258|emb|CAE76855.1| Hypothetical protein MSC_0210 [Mycoplasma mycoides subsp.
          mycoides SC str. PG1]
 gi|301320967|gb|ADK69610.1| conserved hypothetical protein [Mycoplasma mycoides subsp.
          mycoides SC str. Gladysdale]
          Length = 43

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 6/28 (21%), Positives = 15/28 (53%)

Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95
          +T +++ I   +   FK +  LK+ + +
Sbjct: 15 KTGEQIIIPASKTAKFKPAKKLKELLTE 42


>gi|53714063|ref|YP_100055.1| hypothetical protein BF2771 [Bacteroides fragilis YCH46]
 gi|60682257|ref|YP_212401.1| hypothetical protein BF2786 [Bacteroides fragilis NCTC 9343]
 gi|253564705|ref|ZP_04842161.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265766318|ref|ZP_06094359.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52216928|dbj|BAD49521.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|60493691|emb|CAH08480.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
 gi|251946170|gb|EES86547.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263253986|gb|EEZ25451.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301163735|emb|CBW23289.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 150

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 23  KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV--KQKGSRVGRNLQTNQEVKIDPRRV 80
            D    +  L +E+ D   RGE +++ +  TF V  + +G+    + +      I   RV
Sbjct: 52  ADVVAVLKALEDEMVDGLSRGEIVRLGNIGTFQVGLRSRGAEKAEDFK---AANISKARV 108

Query: 81  VVFKASSILKKRIM 94
             F+   +L   + 
Sbjct: 109 -NFRPGPVLADAMK 121


>gi|112253267|gb|ABI14221.1| major basic nuclear protein [Pfiesteria piscicida]
          Length = 112

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            K+IT+  L  +IS E  L + D ++ +T L   +     +   + I   A    + K +
Sbjct: 17  GKSITKGGLADAISGETELKKSDCSKVLTALAEVVAKEVKKTGKVIIPGIARIVTRTKPA 76

Query: 62  -RVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
            + G+     + V +     R VV     + +K+ +
Sbjct: 77  TKAGKREMFGKVVVVKARPARTVVKAFPVAAIKQAV 112


>gi|260172975|ref|ZP_05759387.1| hypothetical protein BacD2_13983 [Bacteroides sp. D2]
 gi|315921254|ref|ZP_07917494.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695129|gb|EFS31964.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 220

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L K I     L+  D    + +L + + D    G+++ +     F +K        + + 
Sbjct: 37  LAKEIQIATSLTEGDVKSVLESLSHFMGDRLREGQSVHLDGIGYFQIKLNSQEPITSPKL 96

Query: 70  NQEVKIDPRRVVVFKASSILKKRI 93
               +I  +  + FKA + LK+ +
Sbjct: 97  KAN-QIKLKANISFKADAKLKRSV 119


>gi|317477782|ref|ZP_07936974.1| hypothetical protein HMPREF1007_00090 [Bacteroides sp. 4_1_36]
 gi|316906054|gb|EFV27816.1| hypothetical protein HMPREF1007_00090 [Bacteroides sp. 4_1_36]
          Length = 207

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 11/90 (12%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF-----HVKQKGSRV 63
           +L + I +   L+  D +  +  L + + +    G  + +     F       +   +  
Sbjct: 37  ELRRRIQERSSLTETDVSAVLDALSHVMGEDLAEGRQVHLDGIGYFHPVLTSTEPVTAAT 96

Query: 64  GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
            R  +T  ++K+   + + F+A  +LK  I
Sbjct: 97  KR--KT-TKIKL---KGIKFRADQVLKNEI 120


>gi|294674259|ref|YP_003574875.1| histone-like DNA-binding protein [Prevotella ruminicola 23]
 gi|294471618|gb|ADE81007.1| histone-like DNA-binding protein [Prevotella ruminicola 23]
          Length = 190

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 18/48 (37%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          ++   I  +  L R D    +  L   +      G+ I++S    F V
Sbjct: 37 EIADFIQTQATLKRSDIKAALDELGAAMKHFLEMGQKIRLSGIGIFKV 84


>gi|282877508|ref|ZP_06286327.1| putative DNA-binding protein [Prevotella buccalis ATCC 35310]
 gi|281300394|gb|EFA92744.1| putative DNA-binding protein [Prevotella buccalis ATCC 35310]
          Length = 160

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV--KQKGS 61
          L + I +   + R D    +  L   + D   +   +K++ F +F +  + K +
Sbjct: 36 LAERIQRNCTVKRSDVVAVLAELVEVMQDELQQSRVVKLNGFGSFKIGLRTKPA 89


>gi|209980428|gb|ACJ04919.1| major basic nuclear protein variant [Amphidinium carterae]
          Length = 85

 Score = 38.4 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 30/64 (46%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +K +T++++ K ++++ G +RK     V  L     +   +  + K++      +K K +
Sbjct: 13 AKVMTQTEVYKIVAEKTGFARKQVKGAVDALMELSAEQVKKAGSFKVAGMLNMKLKSKPA 72

Query: 62 RVGR 65
             R
Sbjct: 73 TKAR 76


>gi|53711606|ref|YP_097598.1| hypothetical protein BF0315 [Bacteroides fragilis YCH46]
 gi|60679856|ref|YP_210000.1| hypothetical protein BF0263 [Bacteroides fragilis NCTC 9343]
 gi|253564343|ref|ZP_04841800.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265764990|ref|ZP_06093265.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52214471|dbj|BAD47064.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|60491290|emb|CAH06038.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
 gi|251948119|gb|EES88401.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263254374|gb|EEZ25808.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301161376|emb|CBW20916.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 166

 Score = 38.4 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 17/52 (32%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          K +    +   +++   L   D    +T L + I      G  + I     F
Sbjct: 32 KPVNSVQIANQLAERSSLQNGDVLSALTQLSDIIAAHLKEGRTVSIDGLGNF 83


>gi|212550286|ref|YP_002308607.1| hypothetical protein CFPG_P2-27 [Candidatus Azobacteroides
          pseudotrichonymphae genomovar. CFP2]
 gi|212549419|dbj|BAG84085.1| conserved hypothetical protein [Candidatus Azobacteroides
          pseudotrichonymphae genomovar. CFP2]
          Length = 140

 Score = 38.4 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 22/47 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSF 51
          +   D+++S S+  G SR+           E+ ++ + G+ + +  F
Sbjct: 6  MNAGDIIRSASRASGYSRRVVKEVFQQCIEEMKETLLSGKRVSLKDF 52


>gi|293372729|ref|ZP_06619110.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|292632238|gb|EFF50835.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
          Length = 169

 Score = 38.4 bits (89), Expect = 0.39,   Method: Composition-based stats.
 Identities = 7/45 (15%), Positives = 19/45 (42%)

Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          ++I++   L+  D    +  L   + +  +    +K+    TF +
Sbjct: 38 ETIAERSSLTAGDVHNVIRNLMAVMREQLLNSRTVKLEGLGTFTL 82


>gi|265751985|ref|ZP_06087778.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263236777|gb|EEZ22247.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 130

 Score = 38.4 bits (89), Expect = 0.39,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 15/34 (44%)

Query: 26 TRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59
             +  +FN + +   +G+ + +    TF V  K
Sbjct: 53 EAVLEEVFNRLSEHLAQGDQVTLDGLGTFSVSLK 86


>gi|298479891|ref|ZP_06998090.1| DNA-binding protein [Bacteroides sp. D22]
 gi|298273700|gb|EFI15262.1| DNA-binding protein [Bacteroides sp. D22]
          Length = 212

 Score = 38.4 bits (89), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L K I     L+  D    + +L + + D    G+++ +     F +K        + + 
Sbjct: 37  LAKEIQIATSLTEGDVKSVLESLSHFMGDRLREGQSVHLDGIGYFQIKLNSQEPITSPKL 96

Query: 70  NQEVKIDPRRVVVFKASSILKKRI 93
               +I  +  + FKA + LK+ +
Sbjct: 97  KAN-QIKLKANISFKADAKLKRSV 119


>gi|224536984|ref|ZP_03677523.1| hypothetical protein BACCELL_01860 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521390|gb|EEF90495.1| hypothetical protein BACCELL_01860 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 212

 Score = 38.4 bits (89), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 9/87 (10%)

Query: 13  SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF----HVKQKGSRVGRNLQ 68
            + +   LS  D+   + TL     +    G  + I     F       QK +R  +N  
Sbjct: 40  RVHERSSLSVGDAKSAIDTLTQLCGEELREGREVHIEGLGYFSPTLEATQKVTRKTKNKH 99

Query: 69  TNQEVKIDPRRVVVFKASSILKKRIMD 95
               +     + V F+    LK  +  
Sbjct: 100 LKLRL-----KGVSFRPDIRLKAALAG 121


>gi|212551046|ref|YP_002309363.1| hypothetical protein CFPG_689 [Candidatus Azobacteroides
          pseudotrichonymphae genomovar. CFP2]
 gi|212549284|dbj|BAG83952.1| hypothetical protein [Candidatus Azobacteroides
          pseudotrichonymphae genomovar. CFP2]
          Length = 140

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 22/47 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSF 51
          +   D+++S S+  G SR+           E+ ++ + G+ + +  F
Sbjct: 6  MNAGDIIRSASRASGYSRRVVKEVFQQCIEEMKETLLSGKRVSLKDF 52


>gi|160887844|ref|ZP_02068847.1| hypothetical protein BACUNI_00247 [Bacteroides uniformis ATCC 8492]
 gi|270295548|ref|ZP_06201749.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156862674|gb|EDO56105.1| hypothetical protein BACUNI_00247 [Bacteroides uniformis ATCC 8492]
 gi|270274795|gb|EFA20656.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 207

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 17/93 (18%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           +L + I     L+  D T  +  + + +      G  + +     F V            
Sbjct: 37  ELRRDIQARCSLTETDVTAVLDAVSHVMGRELAEGRQVHLDGIGYFRVSLT--------- 87

Query: 69  TNQEVKIDPRRV--------VVFKASSILKKRI 93
           T + V    +R         V F+A   LK  I
Sbjct: 88  TIEPVVAATKRKLTKVKMAGVKFRADQKLKNEI 120


>gi|160884009|ref|ZP_02065012.1| hypothetical protein BACOVA_01983 [Bacteroides ovatus ATCC 8483]
 gi|293371569|ref|ZP_06617987.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|156110739|gb|EDO12484.1| hypothetical protein BACOVA_01983 [Bacteroides ovatus ATCC 8483]
 gi|292633517|gb|EFF52082.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
          Length = 203

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 8/93 (8%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           + +  + K  G+SR      + +  NE+ D    G  +++     F V  KG RV +   
Sbjct: 36  EFLDRVHKFTGISRSLLAGAMQSFQNELRDLIANGWIVELGDIGYFSVSLKGPRVMK--- 92

Query: 69  TNQEV---KIDPRRVVVFKASSILKKRIMDDMR 98
             ++V    I+ + V  F+  S  KK +   MR
Sbjct: 93  -KKDVHAQSIELKNV-NFRVGSQFKKEVGQQMR 123


>gi|329965124|ref|ZP_08302093.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
 gi|328523952|gb|EGF51030.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
          Length = 212

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 24/61 (39%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T T+ + V+ +S    L +      +    +E+CD    G  +++     F    K  R
Sbjct: 30 RTYTQKEFVEHVSTFQHLPKNVIGAALDACIDELCDLLANGNIVELGELGFFSTSLKCLR 89

Query: 63 V 63
           
Sbjct: 90 E 90


>gi|295085683|emb|CBK67206.1| DNA-binding protein, histone-like, putative [Bacteroides
           xylanisolvens XB1A]
          Length = 212

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L K I     L+  D    + +L + + D    G+++ +     F +K        + + 
Sbjct: 37  LAKEIQIATSLTEGDVKSVLESLSHFMGDRLREGQSVHLDGIGYFQIKLNSQEPITSPKL 96

Query: 70  NQEVKIDPRRVVVFKASSILKKRI 93
               +I  +  + FKA + LK+ +
Sbjct: 97  KAN-QIKLKANISFKADAKLKRSV 119


>gi|298479776|ref|ZP_06997976.1| conserved hypothetical protein [Bacteroides sp. D22]
 gi|298274166|gb|EFI15727.1| conserved hypothetical protein [Bacteroides sp. D22]
          Length = 199

 Score = 38.0 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 24/106 (22%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------V 56
           T+ + + +  + K  G+SR      +    NE  D    G  +++ +F  F        V
Sbjct: 30  TVDKEEFLDRVHKFTGISRSLLAGAMEAFANEARDLLADGWNVEMGNFGFFSTSLQCPPV 89

Query: 57  KQKGSRVGRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMR 98
           K K               I    V    + F+AS   KK + + MR
Sbjct: 90  KDKKE-------------IRAASVQMKNINFRASRPFKKEVGNKMR 122


>gi|189464134|ref|ZP_03012919.1| hypothetical protein BACINT_00470 [Bacteroides intestinalis DSM
          17393]
 gi|189437924|gb|EDV06909.1| hypothetical protein BACINT_00470 [Bacteroides intestinalis DSM
          17393]
          Length = 170

 Score = 38.0 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 20/45 (44%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          L + I +  G+S +D    +  +   +      G+++K+  F  F
Sbjct: 40 LSQEIEEMGGMSAEDVEHVMKAIVRNLKRKLTDGDSVKLDGFGVF 84


>gi|237721894|ref|ZP_04552375.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229448763|gb|EEO54554.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 212

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L K I     L+  D    + +L + + D    G+++ +     F +K        + + 
Sbjct: 37  LAKEIQIATSLTEGDVKSVLESLSHFMGDRLREGQSVHLDGIGYFQIKLNSQEPITSPKL 96

Query: 70  NQEVKIDPRRVVVFKASSILKKRI 93
               +I  +  + FKA + LK+ +
Sbjct: 97  KAN-QIKLKANISFKADAKLKRSV 119


>gi|255689856|ref|ZP_05413531.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565]
 gi|260624460|gb|EEX47331.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565]
          Length = 216

 Score = 38.0 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L K I     L+  D    + +L + +      GE++ +     F VK        + + 
Sbjct: 37  LAKEIQMATSLTEGDVKSVLESLSHFMGYRLREGESVHLDGIGYFQVKLNSQEPITSPKL 96

Query: 70  NQEVKIDPRRVVVFKASSILKKRI 93
               +I  +  + FKA + LK+ +
Sbjct: 97  KAN-QIKLKANICFKADAKLKRSV 119


>gi|112253259|gb|ABI14217.1| major basic nuclear protein [Pfiesteria piscicida]
 gi|112253271|gb|ABI14223.1| major basic nuclear protein [Pfiesteria piscicida]
 gi|112253279|gb|ABI14227.1| major basic nuclear protein [Pfiesteria piscicida]
          Length = 108

 Score = 38.0 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 42/96 (43%), Gaps = 4/96 (4%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           SK+IT+  L ++IS    L + D ++ ++ L   +     +   + +   A    + K +
Sbjct: 13  SKSITKGGLAEAISGSTELKKSDCSKVLSALAEVVAKEVKKTGKVIVPGIARIVTRTKPA 72

Query: 62  -RVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
            + G+     + V++     + VV     + +K+ +
Sbjct: 73  TKAGKREMFGKVVEVKARPAKTVVKAFPVAAMKQAV 108


>gi|237720494|ref|ZP_04550975.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|299147015|ref|ZP_07040082.1| putative DNA-binding protein [Bacteroides sp. 3_1_23]
 gi|229450245|gb|EEO56036.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298514900|gb|EFI38782.1| putative DNA-binding protein [Bacteroides sp. 3_1_23]
          Length = 203

 Score = 38.0 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 8/93 (8%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           + +  + K  G+SR      + +  NE+ D    G  +++     F V  KG RV +   
Sbjct: 36  EFLDRVHKFTGISRSLLAGAMQSFQNELRDLIANGWIVELGDIGYFSVSLKGPRVMK--- 92

Query: 69  TNQEV---KIDPRRVVVFKASSILKKRIMDDMR 98
             ++V    I+ + V  F+  S  KK +   MR
Sbjct: 93  -KKDVHAQSIELKNV-NFRVGSQFKKEVGQQMR 123


>gi|237713716|ref|ZP_04544197.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409378|ref|ZP_06085921.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644919|ref|ZP_06722655.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294808816|ref|ZP_06767546.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229446163|gb|EEO51954.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352830|gb|EEZ01927.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292639732|gb|EFF58014.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294443988|gb|EFG12725.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 169

 Score = 38.0 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 18/43 (41%)

Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          ++I++   L+  D    +  L   + +  +    +K+    TF
Sbjct: 38 ETIAERSSLTAGDVHNVIRNLMAVMREQLLNSRTVKLEGLGTF 80


>gi|112253697|gb|ABI14433.1| major basic nucleic protein [Karlodinium micrum]
          Length = 76

 Score = 38.0 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 24/59 (40%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          K +T+  L K+++ E GL +K  +  + +L +       +     I        + K +
Sbjct: 14 KAMTKGALAKALATEHGLKQKACSDMLNSLASIATKEVKKAGIFSIPGLCRIKTRTKPA 72


>gi|189467113|ref|ZP_03015898.1| hypothetical protein BACINT_03497 [Bacteroides intestinalis DSM
           17393]
 gi|189435377|gb|EDV04362.1| hypothetical protein BACINT_03497 [Bacteroides intestinalis DSM
           17393]
          Length = 211

 Score = 38.0 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 17/89 (19%)

Query: 13  SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF--------HVKQKGSRVG 64
            I +   L+  D +  +  L + + +    G  + +     F         +K+   R  
Sbjct: 41  KIQERCSLTETDVSAVLDALSHAMGEELAEGRQVHLDGIGYFHPTLTCTEEIKEDTKRK- 99

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
               T   +     + + F+A   L+  I
Sbjct: 100 ---NTKVRL-----KGIKFRADQDLRSEI 120


>gi|282859774|ref|ZP_06268868.1| putative DNA-binding protein [Prevotella bivia JCVIHMP010]
 gi|282587394|gb|EFB92605.1| putative DNA-binding protein [Prevotella bivia JCVIHMP010]
          Length = 152

 Score = 38.0 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          L   IS    ++  D    ++ L  E+  +   G+ + +S   +F    + 
Sbjct: 30 LAGRISNTCTVTESDILAVISALVTEMGYALKDGKRVVLSGLGSFKAGFRS 80


>gi|212550354|ref|YP_002308672.1| hypothetical protein CFPG_P1-35 [Candidatus Azobacteroides
          pseudotrichonymphae genomovar. CFP2]
 gi|212549389|dbj|BAG84056.1| conserved hypothetical protein [Candidatus Azobacteroides
          pseudotrichonymphae genomovar. CFP2]
          Length = 140

 Score = 38.0 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 22/47 (46%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSF 51
          +   D+++S S+  G SR+           E+ ++ + G+ + +  F
Sbjct: 6  MNAGDIIRSASRASGYSRRVVKDVFQQCIEEMKETLLSGKRVSLKDF 52


>gi|241762983|ref|ZP_04761045.1| histone family protein DNA-binding protein [Acidovorax delafieldii
           2AN]
 gi|241367935|gb|EER62154.1| histone family protein DNA-binding protein [Acidovorax delafieldii
           2AN]
          Length = 131

 Score = 38.0 bits (88), Expect = 0.48,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 8/97 (8%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSF---ATFHVKQ 58
           T T+  L   +++  G+  K     +  L   +  +   +G     +          V  
Sbjct: 33  TFTKGALTNHLAELAGVEPKAVKAVLAALETTVLGAVNKKGAGEFTLPGLLKIGVQKVPA 92

Query: 59  KGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92
           K  R G N  T +E           +  +A   LK  
Sbjct: 93  KPKRKGINPFTKEEQVFAAKPATVRIKARALKKLKDA 129


>gi|218130676|ref|ZP_03459480.1| hypothetical protein BACEGG_02265 [Bacteroides eggerthii DSM 20697]
 gi|217987020|gb|EEC53351.1| hypothetical protein BACEGG_02265 [Bacteroides eggerthii DSM 20697]
          Length = 299

 Score = 38.0 bits (88), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           T T+ + V+ +S    L +      +    +E+CD    G  +++     F    K  R 
Sbjct: 118 TYTQKEFVEHVSTFQHLPKNVIGAALDACIDELCDLLANGNIVELGELGFFSTSLKCLRE 177


>gi|112253691|gb|ABI14430.1| major basic nucleic protein [Karlodinium micrum]
 gi|112253693|gb|ABI14431.1| major basic nucleic protein [Karlodinium micrum]
 gi|112253695|gb|ABI14432.1| major basic nucleic protein [Karlodinium micrum]
          Length = 76

 Score = 38.0 bits (88), Expect = 0.48,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 24/59 (40%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          K +T+  L K+++ E GL +K  +  + +L +       +     I        + K +
Sbjct: 14 KAMTKGALAKALATEHGLKQKACSDMLNSLASIATKEVKKAGIFSIPGLCRIKTRTKPA 72


>gi|91779334|ref|YP_554542.1| Bph2 [Burkholderia xenovorans LB400]
 gi|296157052|ref|ZP_06839889.1| histone family protein DNA-binding protein [Burkholderia sp. Ch1-1]
 gi|91691994|gb|ABE35192.1| DNA-binding protein BpH2 [Burkholderia xenovorans LB400]
 gi|295892938|gb|EFG72719.1| histone family protein DNA-binding protein [Burkholderia sp. Ch1-1]
          Length = 150

 Score = 38.0 bits (88), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 8/97 (8%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVK---Q 58
           T T++ L   +++   +  K +   +  L + I  +   +G     +S      V+    
Sbjct: 51  TFTKASLAAHVAERAAVEPKTAKAVLAALEDTILGAVHKKGAGEFTLSGLLKIVVQAVPA 110

Query: 59  KGSRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92
           K  R G++  + +E     +     +  +    LK  
Sbjct: 111 KKKRFGKDPFSGEERWFPAKPASVRIKARPLKKLKDA 147


>gi|258647833|ref|ZP_05735302.1| putative non-specific DNA binding protein [Prevotella tannerae
          ATCC 51259]
 gi|260851655|gb|EEX71524.1| putative non-specific DNA binding protein [Prevotella tannerae
          ATCC 51259]
          Length = 136

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +V  I K  G+S       +  L  EI ++   G ++++    +FH+     
Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEILETLADGNSVRLGDLGSFHLTMHAE 86


>gi|187919157|ref|YP_001888188.1| histone family protein DNA-binding protein [Burkholderia
           phytofirmans PsJN]
 gi|187717595|gb|ACD18818.1| histone family protein DNA-binding protein [Burkholderia
           phytofirmans PsJN]
          Length = 150

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 8/97 (8%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVK---Q 58
           T T++ L   +++   +  K +   +  L + I  +   +G     +S      V+    
Sbjct: 51  TFTKASLAAHVAERAAVEPKTAKAVLAALEDTILGAVHKKGAGEFTLSGLLKIVVQAVPA 110

Query: 59  KGSRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92
           K  R G++  + +E     +     +  +    LK  
Sbjct: 111 KKKRFGKDPFSGEERWFPAKPASVRIKARPLKKLKDA 147


>gi|325270481|ref|ZP_08137083.1| hypothetical protein HMPREF9141_2293 [Prevotella multiformis DSM
          16608]
 gi|324987204|gb|EGC19185.1| hypothetical protein HMPREF9141_2293 [Prevotella multiformis DSM
          16608]
          Length = 179

 Score = 38.0 bits (88), Expect = 0.51,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
           +L + I     ++  D    ++ L  E+      G  +KI    TF V
Sbjct: 34 KELAQRIGNRCTVTEPDILAVISALVFEMNQVLKAGSRVKIDGLGTFRV 82


>gi|167764502|ref|ZP_02436623.1| hypothetical protein BACSTE_02891 [Bacteroides stercoris ATCC
          43183]
 gi|167697171|gb|EDS13750.1| hypothetical protein BACSTE_02891 [Bacteroides stercoris ATCC
          43183]
          Length = 112

 Score = 38.0 bits (88), Expect = 0.52,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 16/34 (47%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53
          +++ D    +  L  EI  +   G+ +K++   T
Sbjct: 1  MTKGDVKHVIEALVEEIQANLANGDKVKLNQLGT 34


>gi|317064577|ref|ZP_07929062.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690253|gb|EFS27088.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 100

 Score = 37.6 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 28/77 (36%)

Query: 25  STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84
           + + V  ++  I ++     ++ + +   F  K+   R        +     P+ VV F+
Sbjct: 24  AKKKVRLIWESIYEAIDTEGSLTLLNMGMFEKKELRPRKIYIPVNGKMSVSKPKTVVKFR 83

Query: 85  ASSILKKRIMDDMRGRK 101
           A     K + +     +
Sbjct: 84  AGKGWVKMVNESGENNE 100


>gi|212691193|ref|ZP_03299321.1| hypothetical protein BACDOR_00684 [Bacteroides dorei DSM 17855]
 gi|212666425|gb|EEB26997.1| hypothetical protein BACDOR_00684 [Bacteroides dorei DSM 17855]
          Length = 234

 Score = 37.6 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 18/103 (17%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF-------H 55
           +TIT   +VK +SK    S       +  + + +     +G+ +++    TF        
Sbjct: 56  ETITTDHIVKELSKHSAYSVGCVVGVLQEVADMVVSHLRQGKNVRLDGLGTFSLALSSRE 115

Query: 56  VKQKGS-RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           V  +   R          V+I   + V F+    L KR+  D 
Sbjct: 116 VTDRKEIRAA-------SVRI---KKVNFRPVPELVKRVRQDT 148


>gi|237712358|ref|ZP_04542839.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237726491|ref|ZP_04556972.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229435017|gb|EEO45094.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229453679|gb|EEO59400.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 234

 Score = 37.6 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 18/103 (17%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF-------H 55
           +TIT   +VK +SK    S       +  + + +     +G+ +++    TF        
Sbjct: 56  ETITTDHIVKELSKHSAYSAGCVVGVLQEVADMVVSHLRQGKNVRLDGLGTFSLALSSRE 115

Query: 56  VKQKGS-RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           V  +   R          V+I   + V F+    L KR+  D 
Sbjct: 116 VTDRKEIRAA-------SVRI---KKVNFRPVPELVKRVRQDT 148


>gi|257470368|ref|ZP_05634459.1| hypothetical protein FulcA4_13572 [Fusobacterium ulcerans ATCC
           49185]
          Length = 98

 Score = 37.6 bits (87), Expect = 0.58,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 28/77 (36%)

Query: 25  STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84
           + + V  ++  I ++     ++ + +   F  K+   R        +     P+ VV F+
Sbjct: 22  AKKKVRLIWESIYEAIDTEGSLTLLNMGMFEKKELRPRKIYIPVNGKMSVSKPKTVVKFR 81

Query: 85  ASSILKKRIMDDMRGRK 101
           A     K + +     +
Sbjct: 82  AGKGWVKMVNESGENNE 98


>gi|325856570|ref|ZP_08172237.1| putative DNA-binding protein [Prevotella denticola CRIS 18C-A]
 gi|325483418|gb|EGC86392.1| putative DNA-binding protein [Prevotella denticola CRIS 18C-A]
          Length = 177

 Score = 37.6 bits (87), Expect = 0.58,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
           +L   IS    ++  D    ++ L  E+      G  +KI    TF V
Sbjct: 28 KELALRISNRCTVTEPDILAVISALVFEMNQVLKSGSRVKIDGLGTFRV 76


>gi|112253261|gb|ABI14218.1| major basic nuclear protein [Pfiesteria piscicida]
 gi|112253265|gb|ABI14220.1| major basic nuclear protein [Pfiesteria piscicida]
 gi|112253273|gb|ABI14224.1| major basic nuclear protein [Pfiesteria piscicida]
 gi|112253275|gb|ABI14225.1| major basic nuclear protein [Pfiesteria piscicida]
 gi|112253285|gb|ABI14230.1| major basic nuclear protein [Pfiesteria piscicida]
          Length = 108

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 42/96 (43%), Gaps = 4/96 (4%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           SK+IT+  L ++IS    L + D ++ +T L   +     +   + +   A    + K +
Sbjct: 13  SKSITKGGLAEAISGSTELKKSDCSKVLTALAEVVAKEVKKTGKVIVPGIARIVTRTKPA 72

Query: 62  -RVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
            + G+     + V++     + VV     + +K+ +
Sbjct: 73  TKAGKREMFGKVVEVKARPAKTVVKAFPVAAMKQAV 108


>gi|317475810|ref|ZP_07935067.1| hypothetical protein HMPREF1016_02049 [Bacteroides eggerthii
           1_2_48FAA]
 gi|316907970|gb|EFV29667.1| hypothetical protein HMPREF1016_02049 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 205

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 19/115 (16%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF--------H 55
           TI R + +  +    G+SR      +    +E+ D    G  +++     F         
Sbjct: 31  TIERKEFINRVHLFTGISRSLLEGAMAGFMDELRDCLANGWTVELGELGYFTPSLNCRRE 90

Query: 56  VKQKGS-RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
           V +K   R          V +   R + F+        + + +   +  +    S
Sbjct: 91  VMEKKELRSA-------SVTL---RGLNFRLGKEFYNELNEKIHLERSPQSATAS 135


>gi|268317076|ref|YP_003290795.1| Sporulation domain-containing protein [Rhodothermus marinus DSM
          4252]
 gi|262334610|gb|ACY48407.1| Sporulation domain protein [Rhodothermus marinus DSM 4252]
          Length = 361

 Score = 37.6 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 3/45 (6%), Positives = 16/45 (35%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFA 52
          + L++ +++  G + + +   +    + I     +     +    
Sbjct: 3  ASLIQQLAERLGCTPEAAEAALRQYIDRIQKQLAQEGQAILPGLG 47


>gi|237715571|ref|ZP_04546052.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262408580|ref|ZP_06085126.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647537|ref|ZP_06725117.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294806023|ref|ZP_06764884.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|298481416|ref|ZP_06999608.1| DNA-binding protein [Bacteroides sp. D22]
 gi|229444280|gb|EEO50071.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262353445|gb|EEZ02539.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637149|gb|EFF55587.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294446771|gb|EFG15377.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|295086830|emb|CBK68353.1| Bacterial DNA-binding protein. [Bacteroides xylanisolvens XB1A]
 gi|298272280|gb|EFI13849.1| DNA-binding protein [Bacteroides sp. D22]
          Length = 203

 Score = 37.6 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 16/93 (17%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L   I +       +    + +L + +      GE + +     F V          LQT
Sbjct: 37  LAAEIHRATTFGEAEVEGVLMSLSHFMSSHLKNGERVHLKGIGYFQVT---------LQT 87

Query: 70  NQEV-KIDPR------RVVVFKASSILKKRIMD 95
            + V  +  R      + + F+A   LK  + D
Sbjct: 88  TEPVYDVKTRSDKVSFKAIRFQADKELKGELYD 120


>gi|112253293|gb|ABI14234.1| major basic nuclear protein [Pfiesteria piscicida]
          Length = 108

 Score = 37.6 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 42/96 (43%), Gaps = 4/96 (4%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           SK+IT+  L ++IS    L + D ++ +T L   +     +   + +   A    + K +
Sbjct: 13  SKSITKGGLAEAISGSTELKKSDCSKVLTALAEVVAKEVKKTGKVIVPGIARIVTRTKPA 72

Query: 62  -RVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
            + G+     + V++     + VV     + +K+ +
Sbjct: 73  TKAGKREMFGKVVEVKARPAKTVVKAFPVAAMKQAV 108


>gi|307566098|ref|ZP_07628556.1| putative DNA-binding protein [Prevotella amnii CRIS 21A-A]
 gi|307345286|gb|EFN90665.1| putative DNA-binding protein [Prevotella amnii CRIS 21A-A]
          Length = 160

 Score = 37.6 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          L   IS    ++  D    ++ L  E+  +   G+ + I+   +F    + 
Sbjct: 30 LAGRISNTCTVTESDILAVISALVTEMSYALKDGKRVLINGLGSFKASFRS 80


>gi|265752067|ref|ZP_06087860.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263236859|gb|EEZ22329.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 207

 Score = 37.6 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 18/103 (17%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF-------H 55
           +TIT   +VK +SK    S       +  + + +     +G+ +++    TF        
Sbjct: 29  ETITTDHIVKELSKHSAYSVGCVVGVLQEVADMVVSHLRQGKNVRLDGLGTFSLALSSRE 88

Query: 56  VKQKGS-RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           V  +   R          V+I   + V F+    L KR+  D 
Sbjct: 89  VTDRKEIRAA-------SVRI---KKVNFRPVPELVKRVRQDT 121


>gi|327314188|ref|YP_004329625.1| putative DNA-binding protein [Prevotella denticola F0289]
 gi|326945353|gb|AEA21238.1| putative DNA-binding protein [Prevotella denticola F0289]
          Length = 177

 Score = 37.6 bits (87), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
           +L   IS    ++  D    ++ L  E+      G  +KI    TF V
Sbjct: 28 KELALRISNRCTVTEPDILAVISALVFEMNQVLKSGSRVKIDGLGTFRV 76


>gi|317504389|ref|ZP_07962373.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315664511|gb|EFV04194.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 149

 Score = 37.6 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          D+   I +   + + D    +T L   +       + +K+  F TF +
Sbjct: 35 DISAIIERNCSMKKSDVKAVLTELVEVMTMQIQDSKRVKLDGFGTFKI 82


>gi|298373791|ref|ZP_06983780.1| conserved hypothetical protein [Bacteroidetes oral taxon 274 str.
          F0058]
 gi|298274843|gb|EFI16395.1| conserved hypothetical protein [Bacteroidetes oral taxon 274 str.
          F0058]
          Length = 461

 Score = 37.6 bits (87), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 43/100 (43%), Gaps = 11/100 (11%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK--- 57
          M +T+T+ D++ ++S++  +  +    F++ L + +  +    + I I    TF +    
Sbjct: 1  MKETVTKQDIISNLSQKLDMPEEQVGIFISKLNDLLLKNLPTNKEITIDGVGTFSLVWST 60

Query: 58 -QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
            K +++    +  +         + F+ +  LK  +  +
Sbjct: 61 YHKNTKL----KDGEP---REFYKLKFEPAESLKSTVNQE 93


>gi|317474200|ref|ZP_07933476.1| hypothetical protein HMPREF1016_00455 [Bacteroides eggerthii
          1_2_48FAA]
 gi|316909510|gb|EFV31188.1| hypothetical protein HMPREF1016_00455 [Bacteroides eggerthii
          1_2_48FAA]
          Length = 212

 Score = 37.6 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          T T+ + V+ +S    L +      +    +E+CD    G  +++     F    K  R 
Sbjct: 31 TYTQKEFVEHVSTFQHLPKNVIGAALDACIDELCDLLANGNIVELGELGFFSTSLKCLRE 90


>gi|224540165|ref|ZP_03680704.1| hypothetical protein BACCELL_05078 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224518199|gb|EEF87304.1| hypothetical protein BACCELL_05078 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 179

 Score = 37.6 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 17/47 (36%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
           +L + ++ +   SR D T  +      + D    GE +       F
Sbjct: 35 KELSRRVAAQTTASRADVTAVIIATVENMIDGLRAGEQVDFGDLGKF 81


>gi|331001787|ref|ZP_08325309.1| 5-formyltetrahydrofolate cyclo-ligase [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330412761|gb|EGG92144.1| 5-formyltetrahydrofolate cyclo-ligase [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 189

 Score = 37.6 bits (87), Expect = 0.68,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSF 51
          + + +L K + ++   LSR +      ++  EI +   +   I I  F
Sbjct: 1  MNKPELRKELLEKRNSLSRTEVLAASESIIKEIENLIKKTGKITILGF 48


>gi|157325091|ref|YP_001468516.1| gp136 [Listeria phage A511]
 gi|66732779|gb|AAY53370.1| gp67 [Listeria phage P100]
 gi|66733099|gb|AAY52917.1| gp136 [Listeria phage A511]
          Length = 104

 Score = 37.2 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 43/105 (40%), Gaps = 4/105 (3%)

Query: 1   MSKTI-TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQ 58
           M K +  R+D+ + +++  G   KD  + +      I D+   G   IK        V+ 
Sbjct: 1   MPKKMINRTDIAREVAQRTGFYIKDVEQILAERDTVIIDALQGGVTKIKEHKLYQIEVET 60

Query: 59  KGSRV-GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102
           K ++    N        I  ++++ FK    + + ++D +  ++ 
Sbjct: 61  KPAKKNAWNGLDKVYFSIPEKKIIKFKPLVAV-EEVIDSLNKKET 104


>gi|224535815|ref|ZP_03676354.1| hypothetical protein BACCELL_00679 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522538|gb|EEF91643.1| hypothetical protein BACCELL_00679 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 169

 Score = 37.2 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 14/96 (14%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           + +T+  + + + +     LS  D    +     ++ +  + G+ + I+    F +  K 
Sbjct: 30  LGQTVDLAFIAQKMQDRSSLSIGDIKSTMQNFVEKLKEQLLEGKTVNIAGLGVFLLAAKS 89

Query: 61  SRVGRNLQTNQEV--KIDPRRV----VVFKASSILK 90
                     +E    +  + V    + F+A+  LK
Sbjct: 90  K--------GEEKAEDVTAKSVDSVRIFFQANKELK 117


>gi|295086144|emb|CBK67667.1| hypothetical protein [Bacteroides xylanisolvens XB1A]
          Length = 203

 Score = 37.2 bits (86), Expect = 0.72,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           + +  + K  G+SR      + +  NE+ D    G  +++     F V  KG RV +   
Sbjct: 36  EFLDRVHKFTGISRSLLAGAMQSFQNELRDLIANGWIVELGDIGYFSVSLKGPRVMK--- 92

Query: 69  TNQEV---KIDPRRVVVFKASSILKKRIMDDMR 98
             ++V    I+ + V  F+ SS  KK +   MR
Sbjct: 93  -KKDVHAQSIELKNV-NFRVSSQFKKEVGQQMR 123


>gi|298480466|ref|ZP_06998663.1| DNA-binding protein [Bacteroides sp. D22]
 gi|298273287|gb|EFI14851.1| DNA-binding protein [Bacteroides sp. D22]
          Length = 203

 Score = 37.2 bits (86), Expect = 0.72,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           + +  + K  G+SR      + +  NE+ D    G  +++     F V  KG RV +   
Sbjct: 36  EFLDRVHKFTGISRSLLAGAMQSFQNELRDLIANGWIVELGDIGYFSVSLKGPRVMK--- 92

Query: 69  TNQEV---KIDPRRVVVFKASSILKKRIMDDMR 98
             ++V    I+ + V  F+ SS  KK +   MR
Sbjct: 93  -KKDVHAQSIELKNV-NFRVSSQFKKEVGQQMR 123


>gi|283781927|ref|YP_003372682.1| DNA-binding protein [Pirellula staleyi DSM 6068]
 gi|283440380|gb|ADB18822.1| DNA-binding protein [Pirellula staleyi DSM 6068]
          Length = 107

 Score = 37.2 bits (86), Expect = 0.74,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 9/96 (9%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA--IKISSFATFHVKQ---KGS 61
           +S+++ +I+   GL++K  T     L  EI  +  +      +I        K    K +
Sbjct: 12  KSEVMANIATATGLTKKQITTVFEALTAEIGKALGKKGPGAFQIPGLCKIVRKHVPAKKA 71

Query: 62  RVGR-NLQTNQ---EVKIDPRRVVVFKASSILKKRI 93
           + G  N  T +            V  +A   LK  +
Sbjct: 72  QKGVLNRLTGKVEDRPAKPASTTVRVRALKSLKSMV 107


>gi|329960119|ref|ZP_08298583.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
 gi|328533071|gb|EGF59844.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
          Length = 202

 Score = 37.2 bits (86), Expect = 0.75,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 11/95 (11%)

Query: 8   SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR-VGRN 66
            +L+   +K  G  + D    + +LF+ +     RG  +++  F  F  K   SR V +N
Sbjct: 35  KELLDLTAKFSGFRKGDIEGVLISLFDTVTHLINRGFRVELGEFGYFTGKVTSSRLVEKN 94

Query: 67  LQTNQEVKIDPRRV----VVFKASSILKKRIMDDM 97
                   I  + V    V F+ S+  KK +   +
Sbjct: 95  ------TDIHAQSVKFNNVNFRPSATFKKALDGKL 123


>gi|84684913|ref|ZP_01012813.1| DNA-binding protein HU, putative [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667248|gb|EAQ13718.1| DNA-binding protein HU, putative [Rhodobacterales bacterium
           HTCC2654]
          Length = 141

 Score = 37.2 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 22/54 (40%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           + DL+  +    G+  +     V  L  E+ +     E +++    T  V+++ 
Sbjct: 58  KKDLIDRVIARSGVKPRYVRPVVDALLVELGEMLEEAETMQLQPLGTVKVQRRK 111


>gi|260893224|ref|YP_003239321.1| hypothetical protein Adeg_1369 [Ammonifex degensii KC4]
 gi|260865365|gb|ACX52471.1| hypothetical protein Adeg_1369 [Ammonifex degensii KC4]
          Length = 89

 Score = 37.2 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 39/103 (37%), Gaps = 17/103 (16%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTR-FVTTLFNEICDSAVRGEAIKISSFATFHVKQK--GS 61
           +  ++L +  +++ G  +KD     +      + +  VR   +K+     F++ +     
Sbjct: 1   MKTAELCRLAAEKGGFWKKDVREFLLQHFPAALAEGLVRDGKVKLKGVGVFYLAKPPGKK 60

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104
           R G                V F+ SS+L +++  + +  +   
Sbjct: 61  RKGV--------------YVRFRPSSLLLRKLNGEGKRDESGS 89


>gi|317480527|ref|ZP_07939619.1| hypothetical protein HMPREF1007_02736 [Bacteroides sp. 4_1_36]
 gi|316903319|gb|EFV25181.1| hypothetical protein HMPREF1007_02736 [Bacteroides sp. 4_1_36]
          Length = 206

 Score = 37.2 bits (86), Expect = 0.77,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 21/51 (41%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          TI R + ++ +    GLSR      +    +E+ D    G  +++     F
Sbjct: 31 TIDRKEFIERVHLFTGLSRSLLEGAMAGFMDELRDCLANGWTVELGELGYF 81


>gi|293373995|ref|ZP_06620335.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|292631036|gb|EFF49674.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
          Length = 172

 Score = 37.2 bits (86), Expect = 0.77,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 3/79 (3%)

Query: 8   SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
           + L K I+    LS  D    +  L   +       E++ +    TF +       G   
Sbjct: 35  AQLSKEIAAYSSLSPGDVKNTLDNLVTVMGQHLQSSESVSVDGLGTFRMVMVARGKGV-- 92

Query: 68  QTNQEVKID-PRRVVVFKA 85
           +T+ EV        V F+ 
Sbjct: 93  ETSDEVSAAQATLTVRFQP 111


>gi|237722105|ref|ZP_04552586.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298483275|ref|ZP_07001454.1| non-specific DNA-binding protein [Bacteroides sp. D22]
 gi|299145165|ref|ZP_07038233.1| putative non-specific DNA-binding protein [Bacteroides sp. 3_1_23]
 gi|229448974|gb|EEO54765.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298270592|gb|EFI12174.1| non-specific DNA-binding protein [Bacteroides sp. D22]
 gi|298515656|gb|EFI39537.1| putative non-specific DNA-binding protein [Bacteroides sp. 3_1_23]
          Length = 172

 Score = 37.2 bits (86), Expect = 0.77,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 3/79 (3%)

Query: 8   SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
           + L K I+    LS  D    +  L   +       E++ +    TF +       G   
Sbjct: 35  AQLSKEIAAYSSLSPGDVKNTLDNLVTVMGQHLQSSESVSVDGLGTFRMVMVARGKGV-- 92

Query: 68  QTNQEVKID-PRRVVVFKA 85
           +T+ EV        V F+ 
Sbjct: 93  ETSDEVSAAQATLTVRFQP 111


>gi|41768|emb|CAA38426.1| HU-2 protein [Escherichia coli]
          Length = 28

 Score = 37.2 bits (86), Expect = 0.77,   Method: Composition-based stats.
 Identities = 4/27 (14%), Positives = 15/27 (55%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTT 31
          + ++ L+  I+++  LS+  +   + +
Sbjct: 1  MNKTQLIDVIAEKAELSKTQAKAALES 27


>gi|153807016|ref|ZP_01959684.1| hypothetical protein BACCAC_01293 [Bacteroides caccae ATCC 43185]
 gi|149130136|gb|EDM21346.1| hypothetical protein BACCAC_01293 [Bacteroides caccae ATCC 43185]
          Length = 165

 Score = 37.2 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 10/87 (11%)

Query: 13  SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQE 72
            +S+  G+ RK     V+ L +++ +    G+++++  F  F    +         +++E
Sbjct: 40  KVSQLCGVHRKVVDLVVSGLVDKMAEDIDDGKSVQLGEFGIFSPTIRTK------SSDEE 93

Query: 73  VKIDPRRVVV----FKASSILKKRIMD 95
            +I  + +V     F    I K  + D
Sbjct: 94  KEISSKSIVQRKILFYPGKIFKDTLAD 120


>gi|255103202|ref|ZP_05332179.1| hypothetical protein CdifQCD-6_20488 [Clostridium difficile
          QCD-63q42]
          Length = 92

 Score = 37.2 bits (86), Expect = 0.79,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + D +K +++E G+S+      +  +  +  +    GE + +     +  K +  + G
Sbjct: 1  MKKVDFLKEVAEELGVSQIRVREILDVIEKKRNEVLQDGEELTLMGV-KYLTKIQKGKEG 59

Query: 65 ---RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
                 T +  K + +RV   K +  LK  I
Sbjct: 60 EITLKDGTKKPWKTEEKRVPKLKIAKSLKDAI 91


>gi|294678106|ref|YP_003578721.1| DNA-binding protein HU [Rhodobacter capsulatus SB 1003]
 gi|294476926|gb|ADE86314.1| DNA-binding protein HU-3 [Rhodobacter capsulatus SB 1003]
          Length = 148

 Score = 37.2 bits (86), Expect = 0.79,   Method: Composition-based stats.
 Identities = 6/50 (12%), Positives = 18/50 (36%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
           + D V+ +    G  +  +      +   + ++  +GE + +       V
Sbjct: 58  KKDFVERVVLRSGAKKPAARDLTEAVLAVLGEALAKGETLVLPPLGKISV 107


>gi|329961382|ref|ZP_08299505.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
 gi|328531859|gb|EGF58682.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
          Length = 216

 Score = 37.2 bits (86), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 21/51 (41%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          TI R + ++ +    GLSR      +    +E+ D    G  +++     F
Sbjct: 41 TIDRKEFIERVHLFTGLSRSLLEGAMAGFMDELRDCLANGWTVELGELGYF 91


>gi|260172540|ref|ZP_05758952.1| hypothetical protein BacD2_11806 [Bacteroides sp. D2]
 gi|315920833|ref|ZP_07917073.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694708|gb|EFS31543.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 203

 Score = 37.2 bits (86), Expect = 0.80,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           + +  + K  G+SR      + +  NE+ D    G  +++     F V  KG RV +   
Sbjct: 36  EFLDRVHKFTGISRSLLAGAMQSFQNELRDLIANGWIVELGDIGYFSVSLKGPRVMK--- 92

Query: 69  TNQEV---KIDPRRVVVFKASSILKKRIMDDMR 98
             ++V    I+ + V  F+ SS  KK +   MR
Sbjct: 93  -KKDVHAQSIELKNV-NFRVSSQFKKEVGQQMR 123


>gi|256838189|ref|ZP_05543699.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262383239|ref|ZP_06076376.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|301311664|ref|ZP_07217589.1| putative DNA-binding protein [Bacteroides sp. 20_3]
 gi|256739108|gb|EEU52432.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262296117|gb|EEY84048.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|300830224|gb|EFK60869.1| putative DNA-binding protein [Bacteroides sp. 20_3]
          Length = 144

 Score = 37.2 bits (86), Expect = 0.80,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 6/87 (6%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +  L K I     LS  D    + +L   +      G  +++  F  F +       G
Sbjct: 35  LNK--LCKLICSRSTLSSADVKAVLDSLNWAMDLELSSGNVVQLGEFGNFRMSINSE--G 90

Query: 65  RN-LQTNQEVKIDPRRVVVFKASSILK 90
            N  +     KI   R++ F   S L+
Sbjct: 91  TNTPEDFDATKIKGARIIFF-PGSALR 116


>gi|260910809|ref|ZP_05917458.1| conserved hypothetical protein [Prevotella sp. oral taxon 472
          str. F0295]
 gi|260635074|gb|EEX53115.1| conserved hypothetical protein [Prevotella sp. oral taxon 472
          str. F0295]
          Length = 157

 Score = 37.2 bits (86), Expect = 0.81,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV--KQKGS 61
          T+  + L   + +   + + D    +  L   +       + +++  F TF +  K K +
Sbjct: 27 TVNTAALADIMQQNCTVKKSDILAVIAELVEVMKQQLQDSKNVRLDGFGTFRIGLKTKPA 86


>gi|189466691|ref|ZP_03015476.1| hypothetical protein BACINT_03066 [Bacteroides intestinalis DSM
           17393]
 gi|189434955|gb|EDV03940.1| hypothetical protein BACINT_03066 [Bacteroides intestinalis DSM
           17393]
          Length = 176

 Score = 37.2 bits (86), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/94 (12%), Positives = 30/94 (31%), Gaps = 16/94 (17%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF--HVKQKGSR 62
           +T  +L + ++ +  +SR D    + +    +      G+ +       F   +  + + 
Sbjct: 32  LTLKELGQQVASQTTVSRADVAAVIISTVENMIGGLRAGKQVDFGDLGKFRLQINSRAAD 91

Query: 63  VGR-----NLQTNQEVKIDPRRVVVFKASSILKK 91
                   N+ T   ++        F     LK 
Sbjct: 92  TAEKFTAANI-TGVNIQ--------FVPGEDLKD 116


>gi|90417105|ref|ZP_01225033.1| DNA-binding protein HU, putative [marine gamma proteobacterium
           HTCC2207]
 gi|90331121|gb|EAS46377.1| DNA-binding protein HU, putative [marine gamma proteobacterium
           HTCC2207]
          Length = 177

 Score = 37.2 bits (86), Expect = 0.82,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 10/94 (10%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQKGSR- 62
           ++ ++  ++    L+RK     +T L   +     +   GE + ++     H  ++ ++ 
Sbjct: 82  KTQIISELAANSDLTRKQVNTLLTELATLVERHVKKRSVGEFV-LAGLIKIHTVKRPAKK 140

Query: 63  --VGRNLQTNQEVKI---DPRRVVVFKASSILKK 91
              G N  T +E           V   A   LK 
Sbjct: 141 AYTGTNPFTGKETTFKARPASVAVKVHALKGLKD 174


>gi|271970198|ref|YP_003344394.1| hypothetical protein Sros_9020 [Streptosporangium roseum DSM
          43021]
 gi|270513373|gb|ACZ91651.1| conserved hypothetical protein [Streptosporangium roseum DSM
          43021]
          Length = 124

 Score = 37.2 bits (86), Expect = 0.83,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA 45
           + V+++++  GLSR+++          + D    GEA
Sbjct: 4  KEFVQTVAERAGLSREEAADLTRATLGALGDRLSAGEA 41


>gi|303237931|ref|ZP_07324483.1| putative DNA-binding protein [Prevotella disiens FB035-09AN]
 gi|302481896|gb|EFL44939.1| putative DNA-binding protein [Prevotella disiens FB035-09AN]
          Length = 160

 Score = 37.2 bits (86), Expect = 0.86,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 19/55 (34%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          S T+  +DL + I +     + D    +  L   +         + +  F  F +
Sbjct: 28 SGTVHTTDLAEVIQRNCTCKKSDVLAVLAELVEVMQTELQNSHRVHLDGFGAFKI 82


>gi|237718946|ref|ZP_04549427.1| DNA-binding protein [Bacteroides sp. 2_2_4]
 gi|229451724|gb|EEO57515.1| DNA-binding protein [Bacteroides sp. 2_2_4]
          Length = 151

 Score = 37.2 bits (86), Expect = 0.86,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          IT   L   I     LSR D    +T L   + +  + G  + +++  +F V   G RV
Sbjct: 32 ITTKQLEDRIVNATALSRADVRSAITALAKIVREEMLSGRTVDLANLGSFKVVSNGKRV 90


>gi|160892100|ref|ZP_02073103.1| hypothetical protein BACUNI_04563 [Bacteroides uniformis ATCC 8492]
 gi|156858578|gb|EDO52009.1| hypothetical protein BACUNI_04563 [Bacteroides uniformis ATCC 8492]
          Length = 205

 Score = 37.2 bits (86), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 7/113 (6%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           TI R + ++ +    GLSR      +    +E+ D    G  +++     F      +R 
Sbjct: 30  TIDRKEFIERVHLFTGLSRSLLEGAMAGFMDELRDCLANGWTVELGELGYFTPSLSCTRQ 89

Query: 64  GRNLQTNQEVKIDPR---RVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
                T+++         R + F+      K +   M+  +C +      S +
Sbjct: 90  A----TDKKELRAASIALRGLNFRLGREFYKDLKGKMQLERCPQSASVPASSA 138


>gi|88703422|ref|ZP_01101138.1| Transposase Tn3 [Congregibacter litoralis KT71]
 gi|88702136|gb|EAQ99239.1| Transposase Tn3 [Congregibacter litoralis KT71]
          Length = 990

 Score = 37.2 bits (86), Expect = 0.88,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           +V+ +++E   +++D    +  +  E+       +  ++  F+T     + +R   N  T
Sbjct: 122 IVRDLAREAATTKQDLADIINVVIEELVR-----QRFELPGFSTLQRSARQARSTVN--T 174

Query: 70  N 70
            
Sbjct: 175 G 175


>gi|293370928|ref|ZP_06617471.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|292633997|gb|EFF52543.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
          Length = 141

 Score = 36.8 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          IT   L   I     LSR D    +T L   + +  + G  + +++  +F V   G RV
Sbjct: 22 ITTKQLEDRIVNATALSRADVRSAITALAKIVREEMLSGRTVDLANLGSFKVVSNGKRV 80


>gi|237712877|ref|ZP_04543358.1| DNA-binding protein [Bacteroides sp. D1]
 gi|262409707|ref|ZP_06086246.1| DNA-binding protein [Bacteroides sp. 2_1_22]
 gi|294643518|ref|ZP_06721325.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294809390|ref|ZP_06768099.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229447101|gb|EEO52892.1| DNA-binding protein [Bacteroides sp. D1]
 gi|262352449|gb|EEZ01550.1| DNA-binding protein [Bacteroides sp. 2_1_22]
 gi|292641147|gb|EFF59358.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294443408|gb|EFG12166.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 151

 Score = 36.8 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          IT   L   I     LSR D    +T L   + +  + G  + +++  +F V   G RV
Sbjct: 32 ITTKQLEDRIVNATALSRADVRSAITALAKIVREEMLSGRTVDLANLGSFKVVSNGKRV 90


>gi|153808378|ref|ZP_01961046.1| hypothetical protein BACCAC_02672 [Bacteroides caccae ATCC 43185]
 gi|149129281|gb|EDM20497.1| hypothetical protein BACCAC_02672 [Bacteroides caccae ATCC 43185]
          Length = 211

 Score = 36.8 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 17/89 (19%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L + I +   L+  D T  +  L + +      G  + +     F      +        
Sbjct: 38  LSRRIQERCSLTETDVTAVLDALSHIMGQELANGRQVHLDGIGYFRPCLTST-------- 89

Query: 70  NQEVKIDPRRVVV--------FKASSILK 90
            + V ID +R           F+A   LK
Sbjct: 90  -EPVTIDTKRKATKVKLKAIQFRADQTLK 117


>gi|229495486|ref|ZP_04389219.1| putative DNA-binding protein [Porphyromonas endodontalis ATCC
          35406]
 gi|229317469|gb|EEN83369.1| putative DNA-binding protein [Porphyromonas endodontalis ATCC
          35406]
          Length = 140

 Score = 36.8 bits (85), Expect = 0.96,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%)

Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
            I K   LSR D    +  L   + +  + G ++ ++   +F V   G R+ 
Sbjct: 39 NRIIKATALSRADVRSAIAALAEIVREEILAGRSVALADLGSFRVVSTGKRMA 91


>gi|330820882|ref|YP_004349744.1| DNA-binding protein BpH [Burkholderia gladioli BSR3]
 gi|327372877|gb|AEA64232.1| DNA-binding protein BpH [Burkholderia gladioli BSR3]
          Length = 147

 Score = 36.8 bits (85), Expect = 0.97,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFH---VKQKG 60
           T++ L   I++   +  K     + TL N I  S   +G     +          V  K 
Sbjct: 51  TKASLATHIAERAEVELKTVKAVLATLENVILGSIHKKGAGEFTLPGLLKISAQAVAAKK 110

Query: 61  SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92
            R G++  T +E     +     V  +A   LK  
Sbjct: 111 KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 145


>gi|224535687|ref|ZP_03676226.1| hypothetical protein BACCELL_00551 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522697|gb|EEF91802.1| hypothetical protein BACCELL_00551 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 168

 Score = 36.8 bits (85), Expect = 0.99,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 16/101 (15%)

Query: 16  KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------VKQKGSRVGRNLQ 68
           ++  L+  D    +T     + D    G+++ I  F  F        V++K     +N++
Sbjct: 44  EKSSLTLGDIKSVITNFVEALIDKLYGGQSVNIKDFGVFSLSARTVGVEKKEDCTAKNIK 103

Query: 69  TNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
               VKI       F+ S+ ++  +     G+K +  D+ +
Sbjct: 104 ---AVKI------NFRPSTTIRPDVTATRAGQKIDFYDLEA 135


>gi|254881496|ref|ZP_05254206.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254834289|gb|EET14598.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 234

 Score = 36.8 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 18/103 (17%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF-------H 55
           +TIT   +VK +SK    S       +  + + +     +G+ +++    TF        
Sbjct: 56  ETITTDHIVKELSKHSAYSAGCVVGVLQEVADMVVSHLRQGKNVRLDGLGTFSLALSSRE 115

Query: 56  VKQKGS-RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           V  +   R          V+I   + V F+    L KR+  + 
Sbjct: 116 VTDRKEIRAA-------SVRI---KKVNFRPVPELVKRVRQET 148


>gi|217069514|gb|ACJ83244.1| Rv2986c antigen [Mycobacterium tuberculosis]
          Length = 152

 Score = 36.8 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98
           +T + VK+ P  V  F+  +  K  +    R
Sbjct: 1  PRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 32


>gi|150009457|ref|YP_001304200.1| hypothetical protein BDI_2870 [Parabacteroides distasonis ATCC
           8503]
 gi|149937881|gb|ABR44578.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
          Length = 144

 Score = 36.8 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +  L K I     LS  D    + +L   +      G  +++  F  F +       G
Sbjct: 35  LNK--LCKLICSRSTLSSADVKAVLDSLNWAMDLELSSGNVVQLGEFGNFRMSINSE--G 90

Query: 65  RNLQTNQEV---KIDPRRVVVFKASSILK 90
            N  T ++    KI   R++ F   S L+
Sbjct: 91  TN--TPEDFNATKIKGARIIFF-PGSALR 116


>gi|329960902|ref|ZP_08299181.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
 gi|328532188|gb|EGF58992.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
          Length = 207

 Score = 36.8 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 17/46 (36%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55
          +V  IS     +  D    V  L +E+      G ++KI     F 
Sbjct: 35 IVDKISYASSFTPGDIKGLVKALADEMACQMASGRSVKIDGIGVFS 80


>gi|304384122|ref|ZP_07366575.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
 gi|304334749|gb|EFM01026.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
          Length = 150

 Score = 36.8 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 9/80 (11%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR--- 65
            L K I+ E   S  D    +T L   + D   +G ++K+    TF+     ++ G    
Sbjct: 30  QLCKRIAAESTASPADVRAVLTALAPIMADYMAQGRSVKLDGIGTFYFTAVAAKGGVATE 89

Query: 66  -----NLQTNQEVK-IDPRR 79
                N  T   V+ I   R
Sbjct: 90  KEVTANQITGVRVRFIPETR 109


>gi|153808754|ref|ZP_01961422.1| hypothetical protein BACCAC_03053 [Bacteroides caccae ATCC 43185]
 gi|149128580|gb|EDM19798.1| hypothetical protein BACCAC_03053 [Bacteroides caccae ATCC 43185]
          Length = 261

 Score = 36.8 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 10/98 (10%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           +VK I++    +  D       + N+I +  + G  +++     F  K K +R   + + 
Sbjct: 96  IVKEIAQASSFTPADIEGVQLAIENKISEYLISGYHVQLGDLGYFSAKLK-ARPVMDAK- 153

Query: 70  NQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKCN 103
               +I  + +    V F+ SS  +K++   +   K  
Sbjct: 154 ----EIHAQSIYFDNVNFRPSSSFRKKVRGFVEKAKSG 187


>gi|112253289|gb|ABI14232.1| major basic nuclear protein [Pfiesteria piscicida]
 gi|112253291|gb|ABI14233.1| major basic nuclear protein [Pfiesteria piscicida]
          Length = 108

 Score = 36.8 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 42/96 (43%), Gaps = 4/96 (4%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           SK+IT+  L ++IS    L + D ++ +T L   +     +   + +   A    + K +
Sbjct: 13  SKSITKGGLAEAISGSTELKKFDCSKVLTALAEVVAKEVKKTGKVIVPGIARIVTRTKPA 72

Query: 62  -RVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
            + G+     + V++     + VV     + +K+ +
Sbjct: 73  TKAGKREMFGKVVEVKARPAKTVVKAFPVAAMKQAV 108


>gi|13508268|ref|NP_110218.1| histone like protein [Mycoplasma pneumoniae M129]
 gi|2496402|sp|P75249|Y529_MYCPN RecName: Full=Uncharacterized protein MG353 homolog
 gi|1673985|gb|AAB95961.1| bacterial histone-like protein [Mycoplasma pneumoniae M129]
 gi|301633234|gb|ADK86788.1| putative DNA-binding protein HU [Mycoplasma pneumoniae FH]
          Length = 109

 Score = 36.8 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS-SFATFHVKQKG 60
          SK ++RS++ K I+   G+           L   + +  V      +  +     +  + 
Sbjct: 8  SKPLSRSEINKIIAVATGVKEAKIKEIFKYLNTLLLNELVSRSVCILPENLGKLRITIRN 67

Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91
          +R+ ++++T +   I P+ +V +  S  +K+
Sbjct: 68 ARIQKDMKTGEMKHIPPKPLVRYSPSKTIKE 98


>gi|329961378|ref|ZP_08299501.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
 gi|328531855|gb|EGF58678.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
          Length = 156

 Score = 36.8 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 14/92 (15%)

Query: 8   SDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66
            DL   +S + G+  R      +  L + +     +G ++++  F  F       R G N
Sbjct: 35  KDLCDEVS-KIGMAPRGVVKLVLDGLIDTLNMDLNKGFSVQLGEFGCF-------RPGIN 86

Query: 67  LQTNQEV-KIDP----RRVVVFKASSILKKRI 93
            ++ +++ ++      RR ++F      K  +
Sbjct: 87  AKSQEKLEEVTASTIYRRKIIFTPGVYFKDML 118


>gi|238024276|ref|YP_002908508.1| DNA-binding protein BpH [Burkholderia glumae BGR1]
 gi|237878941|gb|ACR31273.1| DNA-binding protein BpH [Burkholderia glumae BGR1]
          Length = 147

 Score = 36.8 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFH---VKQKG 60
           T++ L   I++   +  K     + TL N I  S   +G     +          V  K 
Sbjct: 51  TKASLATHIAERAEVELKTVKAVLATLENVILGSIHKKGAGEFTLPGLLKISAQAVAAKK 110

Query: 61  SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92
            R G++  T +E     +     V  +A   LK  
Sbjct: 111 KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 145


>gi|150006607|ref|YP_001301351.1| hypothetical protein BVU_4127 [Bacteroides vulgatus ATCC 8482]
 gi|149935031|gb|ABR41729.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
          Length = 207

 Score = 36.8 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 18/103 (17%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF-------H 55
           +TIT   +VK +SK    S       +  + + +     +G+ +++    TF        
Sbjct: 29  ETITTDHIVKELSKHSAYSAGCVVGVLQEVADMVVSHLRQGKNVRLDGLGTFSLALSSRE 88

Query: 56  VKQKGS-RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           V  +   R          V+I   + V F+    L KR+  + 
Sbjct: 89  VTDRKEIRAA-------SVRI---KKVNFRPVPELVKRVRQET 121


>gi|319642882|ref|ZP_07997518.1| hypothetical protein HMPREF9011_03118 [Bacteroides sp. 3_1_40A]
 gi|317385430|gb|EFV66373.1| hypothetical protein HMPREF9011_03118 [Bacteroides sp. 3_1_40A]
          Length = 208

 Score = 36.4 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 18/103 (17%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF-------H 55
           +TIT   +VK +SK    S       +  + + +     +G+ +++    TF        
Sbjct: 30  ETITTDHIVKELSKHSAYSAGCVVGVLQEVADMVVSHLRQGKNVRLDGLGTFSLALSSRE 89

Query: 56  VKQKGS-RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           V  +   R          V+I   + V F+    L KR+  + 
Sbjct: 90  VTDRKEIRAA-------SVRI---KKVNFRPVPELVKRVRQET 122


>gi|163752859|ref|ZP_02159983.1| hypothetical protein KAOT1_11902 [Kordia algicida OT-1]
 gi|161326591|gb|EDP97916.1| hypothetical protein KAOT1_11902 [Kordia algicida OT-1]
          Length = 128

 Score = 36.4 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 8   SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
             L + ++    +S  D+   +  L + + +    G +I +  F TF    +    G++ 
Sbjct: 36  KQLSERLAAISTVSEVDTIAVLQGLVHLLPEYLCNGSSISLGDFGTFTPHIRSE--GKD- 92

Query: 68  QTNQEV---KIDPRRVVVFKASSILKKRIM 94
            T + V    I    V  F+ S   K R+ 
Sbjct: 93  -TPEAVNAQSIKSVNV-TFRPSVEFKNRMK 120


>gi|224024019|ref|ZP_03642385.1| hypothetical protein BACCOPRO_00736 [Bacteroides coprophilus DSM
           18228]
 gi|224017241|gb|EEF75253.1| hypothetical protein BACCOPRO_00736 [Bacteroides coprophilus DSM
           18228]
          Length = 147

 Score = 36.4 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 37/93 (39%), Gaps = 14/93 (15%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           ++ + I +E  ++R D+   +T L + + +    GE +++    +  +   G        
Sbjct: 38  EIAERIQRECTVTRADTMAVLTALEDVVSEGLQSGEIVRLGELGSLQLGLSGK------- 90

Query: 69  TNQEVK------IDPRRVVVFKASSILKKRIMD 95
              EV+      +  R  + F+    L+  + +
Sbjct: 91  -GAEVEEEYHVGLIERARINFRPGLTLQDALAN 122


>gi|29346205|ref|NP_809708.1| hypothetical protein BT_0795 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253568363|ref|ZP_04845774.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29338100|gb|AAO75902.1| DNA-binding protein-like protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251842436|gb|EES70516.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 206

 Score = 36.4 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           TIT  D+ ++I     L + D         N        G +I I    +F +K +   V
Sbjct: 30  TITLEDIAETIESRSSLRQSDVIGSFIEFANVFKQELSNGNSIHIPGVGSFRIKAESPEV 89

Query: 64  GRNLQTNQEVKIDPRRV----VVFKASSIL 89
            R+ +     +I    +    +VF     L
Sbjct: 90  -RSPK-----EIRAENIHCSGIVFTPEKDL 113


>gi|294775432|ref|ZP_06740945.1| putative DNA-binding protein [Bacteroides vulgatus PC510]
 gi|294450673|gb|EFG19160.1| putative DNA-binding protein [Bacteroides vulgatus PC510]
          Length = 208

 Score = 36.4 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 18/103 (17%)

Query: 3   KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF-------H 55
           +TIT   +VK +SK    S       +  + + +     +G+ +++    TF        
Sbjct: 30  ETITTDHIVKELSKHSAYSAGCVVGVLQEVADMVVSHLRQGKNVRLDGLGTFSLALSSRE 89

Query: 56  VKQKGS-RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97
           V  +   R          V+I   + V F+    L KR+  + 
Sbjct: 90  VTDRKEIRAA-------SVRI---KKVNFRPVPELVKRVRQET 122


>gi|260592265|ref|ZP_05857723.1| putative non-specific DNA binding protein [Prevotella veroralis
           F0319]
 gi|260535899|gb|EEX18516.1| putative non-specific DNA binding protein [Prevotella veroralis
           F0319]
          Length = 148

 Score = 36.4 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 17/96 (17%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           D+ + I+    L+R D    +T     +      G ++++  F T  +            
Sbjct: 34  DIARDIAGRSSLTRGDIENVLTNFMECLPSYLRDGFSVQLGEFGTMRLTLSS-------- 85

Query: 69  TNQ------EVK-IDPRRVVVFKASSILKKRIMDDM 97
           T        +V+ I PR  V F     LK  + D++
Sbjct: 86  TGALDEKSFKVETIKPR--VTFTPGVELKNGLRDNL 119


>gi|212550305|ref|YP_002308625.1| hypothetical protein CFPG_P3-17 [Candidatus Azobacteroides
          pseudotrichonymphae genomovar. CFP2]
 gi|212549438|dbj|BAG84103.1| conserved hypothetical protein [Candidatus Azobacteroides
          pseudotrichonymphae genomovar. CFP2]
          Length = 137

 Score = 36.4 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
          D+V S+SK  G ++K   +       EI    + G+ + + +F +  + ++ S    N  
Sbjct: 14 DIVSSVSKSTGETKKVVKKIFLQCIEEIKQKLLEGKLVGLRNFLSLTIAERTS----NPS 69


>gi|298484099|ref|ZP_07002267.1| DNA-binding protein [Bacteroides sp. D22]
 gi|295087683|emb|CBK69206.1| DNA-binding protein, histone-like, putative [Bacteroides
           xylanisolvens XB1A]
 gi|298269780|gb|EFI11373.1| DNA-binding protein [Bacteroides sp. D22]
          Length = 161

 Score = 36.4 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 19/99 (19%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
            + +T  ++ K I++    S+ +    +     EI +    G  +++     F +     
Sbjct: 29  GRKVTVKEVCKRITERSSYSKGELEGCIGEFLLEIVNVLEEGNIVQMGDLGNFRMS---- 84

Query: 62  RVGRNLQTNQEVK---------IDPRRVVVFKASSILKK 91
                ++T              ID  +V+ F   S L+K
Sbjct: 85  -----IKTGTPTDTVKEFKASCIDKGKVL-FYPGSDLRK 117


>gi|262382902|ref|ZP_06076039.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262295780|gb|EEY83711.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 345

 Score = 36.4 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 23/45 (51%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA 45
           ++K+I R+DL K++S    +S+ ++ + +      +  +    + 
Sbjct: 232 LAKSIDRNDLAKALSNNTNMSKAEADKAIKQYMEIMHKATAEADK 276


>gi|143652|gb|AAB59030.1| HBsu protein [Bacillus subtilis]
          Length = 25

 Score = 36.4 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 19/25 (76%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFV 29
          + +++L+ ++++   LS+KD+T+ V
Sbjct: 1  MNKTELINAVAEASELSKKDATKAV 25


>gi|332703933|ref|ZP_08424021.1| hypothetical protein Desaf_2813 [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554082|gb|EGJ51126.1| hypothetical protein Desaf_2813 [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 116

 Score = 36.4 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 16/75 (21%)

Query: 21  SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80
           + +D+   +  +   I       +A+ I    TF  KQ+G R                +V
Sbjct: 58  TEEDAYLTLDVMKAIIAMGLNNDDAVDIQGLGTFKTKQEGDR----------------KV 101

Query: 81  VVFKASSILKKRIMD 95
           V F   + L + I  
Sbjct: 102 VTFSPETALVEAISK 116


>gi|288927987|ref|ZP_06421834.1| putative non-specific DNA-binding protein [Prevotella sp. oral
          taxon 317 str. F0108]
 gi|288330821|gb|EFC69405.1| putative non-specific DNA-binding protein [Prevotella sp. oral
          taxon 317 str. F0108]
          Length = 83

 Score = 36.4 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          +   IT   + K ++ E  +S  D    +T L   + D   +G ++K+    +F
Sbjct: 22 VGSAITTEQVAKRVAAESTVSPADVRAVLTALGGVMGDYMAQGRSVKLDGIGSF 75


>gi|315642067|ref|ZP_07896929.1| hypothetical protein HMPREF9088_2254 [Enterococcus italicus DSM
           15952]
 gi|315482339|gb|EFU72885.1| hypothetical protein HMPREF9088_2254 [Enterococcus italicus DSM
           15952]
          Length = 247

 Score = 36.4 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 29/48 (60%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS 49
           S+ +TR ++++SIS EFG+S++ + + +++  +++         + + 
Sbjct: 87  SENMTRDEVIQSISNEFGISKEQAEQSISSNSSQMRRQVADENFVLLR 134


>gi|299142480|ref|ZP_07035612.1| DNA-binding protein [Prevotella oris C735]
 gi|298576202|gb|EFI48076.1| DNA-binding protein [Prevotella oris C735]
          Length = 152

 Score = 36.4 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 18/48 (37%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          D+   I +   + + D    +T L   +       + +K+    TF +
Sbjct: 35 DIAAIIERNCSMKKSDVKAVLTELVEVMTAQIQDSKRVKLDGLGTFKI 82


>gi|281426071|ref|ZP_06256984.1| putative non-specific DNA-binding protein [Prevotella oris F0302]
 gi|281399795|gb|EFB30626.1| putative non-specific DNA-binding protein [Prevotella oris F0302]
          Length = 152

 Score = 36.4 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 18/48 (37%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          D+   I +   + + D    +T L   +       + +K+    TF +
Sbjct: 35 DIAAIIERNCSMKKSDVKAVLTELVEVMTAQIQDSKRVKLDGLGTFKI 82


>gi|258648966|ref|ZP_05736435.1| putative non-specific DNA-binding protein [Prevotella tannerae
          ATCC 51259]
 gi|260850574|gb|EEX70443.1| putative non-specific DNA-binding protein [Prevotella tannerae
          ATCC 51259]
          Length = 136

 Score = 36.4 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          +V  I K  G+S       +  L  EI  +   G ++++    +F
Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEIIQTLSDGNSVRLGDLGSF 79


>gi|255693885|ref|ZP_05417560.1| putative integration host factor IHF alpha subunit [Bacteroides
          finegoldii DSM 17565]
 gi|260620290|gb|EEX43161.1| putative integration host factor IHF alpha subunit [Bacteroides
          finegoldii DSM 17565]
          Length = 39

 Score = 36.4 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLF 33
          M++ +T  DL   ++ +  +++KD+  FV   F
Sbjct: 1  MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFF 33


>gi|62464765|ref|YP_220405.1| hypothetical protein p49879_1p28 [Leptospirillum ferrooxidans]
 gi|60739066|gb|AAX36032.1| ORF62 [Leptospirillum ferrooxidans]
          Length = 62

 Score = 36.0 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 7/69 (10%), Positives = 17/69 (24%), Gaps = 16/69 (23%)

Query: 28 FVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASS 87
           +      I ++  +G  + +  F  F    +                    V  F A  
Sbjct: 1  MIDGALALIVETVAQGGEVGLVGFGKFRPVSRTLWA----------------VPAFAAGK 44

Query: 88 ILKKRIMDD 96
             + +  +
Sbjct: 45 HFLEALKKN 53


>gi|262383554|ref|ZP_06076690.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294452|gb|EEY82384.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 154

 Score = 36.0 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 24/54 (44%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          + K +   ++   +++   +SR D+   +  L   + D   +G  +K+    TF
Sbjct: 22 VGKPVNTDEVADRLAQISTVSRADTYAVLKDLAGVLADYMAQGRTVKMDGLGTF 75


>gi|329963107|ref|ZP_08300887.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
 gi|328529148|gb|EGF56078.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
          Length = 179

 Score = 36.0 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 21/50 (42%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          +T  +L + ++K+  +SR D +  + +    + D    G  +       F
Sbjct: 31 LTLKELSQRVAKQTTVSRADVSAVLISTVENMIDGLHEGLQVDFGELGKF 80


>gi|258648969|ref|ZP_05736438.1| putative non-specific DNA-binding protein [Prevotella tannerae
          ATCC 51259]
 gi|260850580|gb|EEX70449.1| putative non-specific DNA-binding protein [Prevotella tannerae
          ATCC 51259]
          Length = 136

 Score = 36.0 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          +V  I K  G+S       +  L  EI  +   G ++++    +F
Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEILQTLADGNSVRLGDLGSF 79


>gi|258647796|ref|ZP_05735265.1| putative non-specific DNA-binding protein [Prevotella tannerae
          ATCC 51259]
 gi|260852250|gb|EEX72119.1| putative non-specific DNA-binding protein [Prevotella tannerae
          ATCC 51259]
          Length = 136

 Score = 36.0 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          +V  I K  G+S       +  L  EI  +   G ++++    +F
Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEILQTLADGNSVRLGDLGSF 79


>gi|160891184|ref|ZP_02072187.1| hypothetical protein BACUNI_03631 [Bacteroides uniformis ATCC
          8492]
 gi|156859405|gb|EDO52836.1| hypothetical protein BACUNI_03631 [Bacteroides uniformis ATCC
          8492]
          Length = 139

 Score = 36.0 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 17/46 (36%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          +L K ++    L   D+   +  L + I D    G  + I     F
Sbjct: 36 ELAKRLAFVSSLQVGDAQSVLVQLPDIIADYLASGRTVNIKGLGNF 81


>gi|13488420|ref|NP_109427.1| hypothetical protein msl9563 [Mesorhizobium loti MAFF303099]
 gi|14028174|dbj|BAB54766.1| msl9563 [Mesorhizobium loti MAFF303099]
          Length = 78

 Score = 36.0 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 8  SDLVKSI---SKEFGLSRKDSTRFVTTLFNEICDSAVR--GEAIKISSFA 52
          +DL   +   +++ GLSR+D +  V ++F  I ++     G  +  S + 
Sbjct: 29 ADLADQLMAAAEKQGLSRRDISEEVGSVFQVILEAMQNRSGGRLYSSRWG 78


>gi|323344754|ref|ZP_08084978.1| DNA-binding protein [Prevotella oralis ATCC 33269]
 gi|323094024|gb|EFZ36601.1| DNA-binding protein [Prevotella oralis ATCC 33269]
          Length = 206

 Score = 36.0 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 24/90 (26%)

Query: 12  KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS---------- 61
             I K   L+  D    +  +  E+ +  + G  + +     F +  KG           
Sbjct: 37  DRIVKATSLTMGDLVGALEAIRYELVEQLMLGNRVHLPGLGYFSLSVKGELYEDPNTHKF 96

Query: 62  RVGRNL--QTNQEVKIDPRRVVVFKASSIL 89
           R+ RN   +T           V F+    L
Sbjct: 97  RL-RNPYVRT-----------VNFRPEKEL 114


>gi|270294475|ref|ZP_06200677.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317481079|ref|ZP_07940158.1| hypothetical protein HMPREF1007_03277 [Bacteroides sp. 4_1_36]
 gi|270275942|gb|EFA21802.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316902792|gb|EFV24667.1| hypothetical protein HMPREF1007_03277 [Bacteroides sp. 4_1_36]
          Length = 141

 Score = 36.0 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 17/46 (36%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          +L K ++    L   D+   +  L + I D    G  + I     F
Sbjct: 38 ELAKRLAFVSSLQVGDAQSVLVQLPDIIADYLASGRTVNIKGLGNF 83


>gi|258648519|ref|ZP_05735988.1| putative non-specific DNA-binding protein [Prevotella tannerae
          ATCC 51259]
 gi|260851287|gb|EEX71156.1| putative non-specific DNA-binding protein [Prevotella tannerae
          ATCC 51259]
          Length = 136

 Score = 36.0 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          +V  I K  G+S       +  L  EI  +   G ++++    +F
Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEILQTLADGNSVRLGDLGSF 79


>gi|329964884|ref|ZP_08301892.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
 gi|328524525|gb|EGF51593.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
          Length = 185

 Score = 36.0 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 14/96 (14%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
           + +++  + + + +     LS  D    +     ++ +  + G+ + IS    F +  K 
Sbjct: 49  LGQSVNLAFIAQKMQDTSSLSIGDIKSTMQNFVEKLKEQLLEGKTVNISGLGVFMLAAKS 108

Query: 61  SRVGRNLQTNQEV--KIDPRRV----VVFKASSILK 90
                      ++   I  + V    + F+A+  LK
Sbjct: 109 K--------GADLAKDITAKSVESVRICFQANKELK 136


>gi|254253671|ref|ZP_04946988.1| hypothetical protein BDAG_02949 [Burkholderia dolosa AUO158]
 gi|124898316|gb|EAY70159.1| hypothetical protein BDAG_02949 [Burkholderia dolosa AUO158]
          Length = 159

 Score = 36.0 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFH---VKQKG 60
           T++ L   I++   +  K     +  L N +  S   +G     +          V  K 
Sbjct: 63  TKASLAAHIAERAAVEVKAVKAVLAALENVVLGSVHKKGAGEFTLPGLLKITAQVVPAKK 122

Query: 61  SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92
            R G++  T +E     +     V  +A   LK  
Sbjct: 123 KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 157


>gi|237717648|ref|ZP_04548129.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229453050|gb|EEO58841.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 161

 Score = 36.0 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          ++ + IS    L+  D    +  L  ++      G+ +K+ +F TF +
Sbjct: 28 EMAEEISYATSLTDGDVLNVLRALIRQMKVQLAAGKIVKMENFGTFQI 75


>gi|258647720|ref|ZP_05735189.1| putative non-specific DNA binding protein [Prevotella tannerae
          ATCC 51259]
 gi|260852559|gb|EEX72428.1| putative non-specific DNA binding protein [Prevotella tannerae
          ATCC 51259]
          Length = 136

 Score = 36.0 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          +V  I K  G+S       +  L  EI  +   G ++++    +F
Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEILQTLADGNSVRLGDLGSF 79


>gi|258647591|ref|ZP_05735060.1| putative non-specific DNA binding protein [Prevotella tannerae
          ATCC 51259]
 gi|260852396|gb|EEX72265.1| putative non-specific DNA binding protein [Prevotella tannerae
          ATCC 51259]
          Length = 136

 Score = 36.0 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          +V  I K  G+S       +  L  EI  +   G ++++    +F
Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEILQTLADGNSVRLGDLGSF 79


>gi|258647452|ref|ZP_05734921.1| putative non-specific DNA binding protein [Prevotella tannerae
          ATCC 51259]
 gi|260852721|gb|EEX72590.1| putative non-specific DNA binding protein [Prevotella tannerae
          ATCC 51259]
          Length = 136

 Score = 36.0 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +V  I K  G+S       +  L  EI  +   G ++++    +F +     
Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEILQTLSDGNSVRLGDLGSFRLTMHAE 86


>gi|258647221|ref|ZP_05734690.1| putative non-specific DNA binding protein [Prevotella tannerae
          ATCC 51259]
 gi|258647772|ref|ZP_05735241.1| putative non-specific DNA binding protein [Prevotella tannerae
          ATCC 51259]
 gi|260852633|gb|EEX72502.1| putative non-specific DNA binding protein [Prevotella tannerae
          ATCC 51259]
 gi|260852970|gb|EEX72839.1| putative non-specific DNA binding protein [Prevotella tannerae
          ATCC 51259]
          Length = 136

 Score = 36.0 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          +V  I K  G+S       +  L  EI  +   G ++++    +F
Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEILQTLADGNSVRLGDLGSF 79


>gi|154493515|ref|ZP_02032835.1| hypothetical protein PARMER_02854 [Parabacteroides merdae ATCC
          43184]
 gi|154086725|gb|EDN85770.1| hypothetical protein PARMER_02854 [Parabacteroides merdae ATCC
          43184]
          Length = 209

 Score = 36.0 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 14/37 (37%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
           S  D    +  + + + +    G+ ++I     F V
Sbjct: 41 YSEADIAGALQLITDLVTERLREGDNVEIEGLGFFSV 77


>gi|219125000|ref|XP_002182778.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405572|gb|EEC45514.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 559

 Score = 36.0 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 11/57 (19%)

Query: 48 ISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV------VVFKA-----SSILKKRI 93
          +++F+ F V +K  R  RN  T   +++DP  V        F A     S  LK+ +
Sbjct: 10 LATFSQFPVTKKNGRHSRNPATGTPLRVDPDDVSNDATSAHFTAHCHIQSKTLKRAL 66


>gi|255690372|ref|ZP_05414047.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565]
 gi|260624177|gb|EEX47048.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565]
          Length = 173

 Score = 36.0 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 16/96 (16%)

Query: 8   SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK-------QKG 60
           S++   I++E  L+  ++   +  L   +    + G+++K+  + TF+V         + 
Sbjct: 59  SEVAMLIAEETTLNPMEAAMAIRQLRKVMQRLLLDGKSVKLGDWGTFNVTLNTEGADTRE 118

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96
           +    N++    V I       F+    LK  +   
Sbjct: 119 ALTAHNVK---RVNI------NFQPGDELKTAMQKA 145


>gi|253568057|ref|ZP_04845468.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842130|gb|EES70210.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 182

 Score = 36.0 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 11 VKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          ++S+++E      LS +D    + +    +    V G  +K+     F
Sbjct: 38 IESLAREIESIGSLSVEDVEHVMQSFVRSMKKVLVAGNKVKVDGLGIF 85


>gi|332702648|ref|ZP_08422736.1| hypothetical protein Desaf_1504 [Desulfovibrio africanus str.
          Walvis Bay]
 gi|332552797|gb|EGJ49841.1| hypothetical protein Desaf_1504 [Desulfovibrio africanus str.
          Walvis Bay]
          Length = 70

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 19/85 (22%)

Query: 5  ITRSDLVKSISKEF-GLSRKD--STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          IT  +   ++ ++   L +KD  +   V  +F  I  +    + + I          +G+
Sbjct: 2  ITTQEFTSALKEKMPDLFQKDYDARDTVDIIFACIPRALKNADTVDIPGIGQISAHSEGA 61

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKAS 86
          R                + V FK S
Sbjct: 62 R----------------KQVKFKPS 70


>gi|298387693|ref|ZP_06997244.1| DNA-binding protein [Bacteroides sp. 1_1_14]
 gi|298259549|gb|EFI02422.1| DNA-binding protein [Bacteroides sp. 1_1_14]
          Length = 180

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 11 VKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          ++S+++E      LS +D    + +    +    V G  +K+     F
Sbjct: 38 IESLAREIESIGSLSVEDVEHVMQSFVRSMKKVLVAGNKVKVDGLGIF 85


>gi|112253287|gb|ABI14231.1| major basic nuclear protein [Pfiesteria piscicida]
          Length = 114

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           K+IT+  L  +IS E  + + D ++ +T L   +     +   + +   A    + K +
Sbjct: 19 GKSITKGGLADAISAETEVKKSDCSKVLTALAEVVAKEVKKTGKVIVPGIARIVTRTKKA 78


>gi|255013246|ref|ZP_05285372.1| hypothetical protein B2_05020 [Bacteroides sp. 2_1_7]
 gi|298373856|ref|ZP_06983814.1| DNA-binding protein [Bacteroides sp. 3_1_19]
 gi|298268224|gb|EFI09879.1| DNA-binding protein [Bacteroides sp. 3_1_19]
          Length = 144

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 6/87 (6%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
           + +  L K I     LS  D    + +L   +      G  +++  F  F +       G
Sbjct: 35  LNK--LCKLICSRSTLSSADVKAVLDSLNWAMDLELSSGNVVQLGEFGNFRMSINSE--G 90

Query: 65  RN-LQTNQEVKIDPRRVVVFKASSILK 90
            N  +     KI   R++ F   S L+
Sbjct: 91  TNTPEDFDATKIKGVRIIFF-PGSALR 116


>gi|256839502|ref|ZP_05545011.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738432|gb|EEU51757.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 162

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 7/47 (14%), Positives = 20/47 (42%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS 50
           T++  D    I++E  L++ D    +      +  +  +G  +++  
Sbjct: 110 TLSTQDAADQIAEESSLTKGDVLNVLDRYQRYVIKNLQKGYKVELEG 156


>gi|330998429|ref|ZP_08322253.1| putative DNA-binding protein [Paraprevotella xylaniphila YIT
          11841]
 gi|329568535|gb|EGG50340.1| putative DNA-binding protein [Paraprevotella xylaniphila YIT
          11841]
          Length = 143

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 20/46 (43%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          ++   IS    ++R D    ++ L  +I  +   G+ + +    +F
Sbjct: 34 EIATRISSSCTVTRHDCLAVLSALQEQIIYALQEGKRVHLGDIGSF 79


>gi|281357581|ref|ZP_06244068.1| amino acid-binding ACT domain protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281315838|gb|EFA99864.1| amino acid-binding ACT domain protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 469

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 6   TRSDLVK--SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
           TR+ L++     +E GL +  +  FV    + +         +++ SF  F
Sbjct: 81  TRARLIELNRTFEELGLDQAAADDFVNERMDGVRSCLKN--LMQLRSFGHF 129


>gi|218129898|ref|ZP_03458702.1| hypothetical protein BACEGG_01481 [Bacteroides eggerthii DSM 20697]
 gi|317476881|ref|ZP_07936124.1| hypothetical protein HMPREF1016_03108 [Bacteroides eggerthii
           1_2_48FAA]
 gi|217988008|gb|EEC54333.1| hypothetical protein BACEGG_01481 [Bacteroides eggerthii DSM 20697]
 gi|316907056|gb|EFV28767.1| hypothetical protein HMPREF1016_03108 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 160

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 9/107 (8%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L   +S+  G+ RK        L + + +    G+ +++  F  F    + S VG+   T
Sbjct: 37  LCAKVSRILGIHRKTVDLVAAGLVDIMSEEIEDGKTVRLGDFGLF----RPSFVGKCADT 92

Query: 70  NQEVK---IDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
            + V    I  +R++ F         ++D M   +    D     GS
Sbjct: 93  QEGVTASNIVRKRILFF-PGKAF-SAMLDKMSVTRMAMPDTDYTDGS 137


>gi|282599183|ref|YP_003358495.1| putative histone-like protein [Shigella phage phiSboM-AG3]
 gi|226973489|gb|ACO94242.1| putative histone-like protein [Shigella phage phiSboM-AG3]
          Length = 170

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 3/29 (10%)

Query: 51  FATF-HVKQKGS--RVGRNLQTNQEVKID 76
           F  F + +++ +     RN QT +E+ I 
Sbjct: 81  FGVFHNSRERDALFHPSRNPQTGEELPIP 109


>gi|256840874|ref|ZP_05546382.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738146|gb|EEU51472.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 213

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 9  DLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          D V+ I     GLS+ +  + +TT+   +      G+++ +    TF  +
Sbjct: 34 DFVERITYPGSGLSKGNVMQVMTTVAEHLAYCMAEGQSVTLDGIGTFTPR 83


>gi|257470542|ref|ZP_05634632.1| hypothetical protein FulcA4_14446 [Fusobacterium ulcerans ATCC
          49185]
 gi|317064749|ref|ZP_07929234.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690425|gb|EFS27260.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 96

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 27/76 (35%), Gaps = 2/76 (2%)

Query: 23 KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVK-IDPRRVV 81
          K     +   +N +  +    + +   ++  F  ++   R      T ++ + I P+  +
Sbjct: 20 KVVKEKIDLFWNVLLKALEEDKKVIFKNWGAFEKREMKVRKVLVP-TWEKAQYIKPKESI 78

Query: 82 VFKASSILKKRIMDDM 97
           F+A     +    D 
Sbjct: 79 KFRAGKSFIEIANGDT 94


>gi|255013358|ref|ZP_05285484.1| hypothetical protein B2_05580 [Bacteroides sp. 2_1_7]
          Length = 213

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 9  DLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          D V+ I     GLS+ +  + +TT+   +      G+++ +    TF  +
Sbjct: 34 DFVERITYPGSGLSKGNVMQVMTTVAEHLAYCMAEGQSVTLDGIGTFTPR 83


>gi|260591454|ref|ZP_05856912.1| putative non-specific DNA binding protein [Prevotella veroralis
           F0319]
 gi|260536485|gb|EEX19102.1| putative non-specific DNA binding protein [Prevotella veroralis
           F0319]
          Length = 200

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 11  VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
            K I+ E  +S  D    +T L   + D   +G ++K+    +F
Sbjct: 69  AKRIAAESTVSPADVRAVLTALGGVMGDYMSQGRSVKLDGVGSF 112


>gi|221196919|ref|ZP_03569966.1| histone H1 homolog BpH2 [Burkholderia multivorans CGD2M]
 gi|221203589|ref|ZP_03576608.1| histone H1 homolog BpH2 [Burkholderia multivorans CGD2]
 gi|221177523|gb|EEE09951.1| histone H1 homolog BpH2 [Burkholderia multivorans CGD2]
 gi|221183473|gb|EEE15873.1| histone H1 homolog BpH2 [Burkholderia multivorans CGD2M]
          Length = 158

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATF---HVKQKG 60
           T++ L   I++   +  K     +  L N +  S   +G     +          V  K 
Sbjct: 62  TKASLAAHIAERAAVEVKAVKAVLAALENVVLGSIHKKGAGEFTLPGLLKITAQAVPAKK 121

Query: 61  SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92
            R G++  T +E     +     V  +A   LK  
Sbjct: 122 KRFGKDPFTGEERWFPAKPATVRVKARALKKLKDA 156


>gi|255691850|ref|ZP_05415525.1| putative non-specific DNA-binding protein [Bacteroides finegoldii
          DSM 17565]
 gi|260622575|gb|EEX45446.1| putative non-specific DNA-binding protein [Bacteroides finegoldii
          DSM 17565]
          Length = 177

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 11 VKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          ++++++E      LS +D +  + +    +    V G  +K+     F
Sbjct: 38 IEALAREIETIGSLSVEDVSHVMKSFVRAMKKVLVAGNKVKVEGLGIF 85


>gi|298706421|emb|CBJ29417.1| hypothetical protein Esi_0146_0032 [Ectocarpus siliculosus]
          Length = 465

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKIS-SFATFHVKQKG 60
          +++      +  +F  I D+   G  + +  SF T  VK++ 
Sbjct: 50 MTKDMVYGALREVFRGIGDAMSSGGQVSVVFSFGTLEVKERK 91


>gi|218262577|ref|ZP_03476982.1| hypothetical protein PRABACTJOHN_02661 [Parabacteroides johnsonii
          DSM 18315]
 gi|218223286|gb|EEC95936.1| hypothetical protein PRABACTJOHN_02661 [Parabacteroides johnsonii
          DSM 18315]
          Length = 128

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          T+  L   ++    LSR D    V  +   I +    G ++++     F
Sbjct: 34 TKK-LADLVADRCSLSRGDVFASVCEIGGMILELLKDGHSVELDGLGDF 81


>gi|304315862|ref|YP_003851007.1| radical SAM protein [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302777364|gb|ADL67923.1| Radical SAM domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 452

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 16/49 (32%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIK--ISSFA 52
           T+ DL+             +   V   F++I +   +GE +K  I+ F 
Sbjct: 115 TKKDLI-------------TREAVDAFFDDINERL-KGEKVKPYITLFG 149


>gi|255690663|ref|ZP_05414338.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565]
 gi|260623687|gb|EEX46558.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565]
          Length = 203

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 10/105 (9%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           S TIT   L++++++  G         ++ L NE  +    G  +++  F  F  K K  
Sbjct: 29  SGTITAERLIRTVAQRTGFKEGMIEGILSELQNETLEYLGEGYRVELGEFGFFSAKVKS- 87

Query: 62  RVGRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKC 102
           R+  N     +  +    V    V F+AS   +  I  D+  R+C
Sbjct: 88  RLVEN-----KNDLRSNSVSFDGVNFRASKSFRTGIRGDLERRRC 127


>gi|1708440|sp|P80606|IHFB_RHILE RecName: Full=Integration host factor subunit beta;
          Short=IHF-beta
          Length = 30

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 1/30 (3%)

Query: 5  ITRSDLVKSISKE-FGLSRKDSTRFVTTLF 33
          + +S+LV+ ++     L  +D    V    
Sbjct: 1  MIKSELVQIVAARNPHLYHRDVENIVNAFL 30


>gi|333030612|ref|ZP_08458673.1| DNA-binding protein [Bacteroides coprosuis DSM 18011]
 gi|332741209|gb|EGJ71691.1| DNA-binding protein [Bacteroides coprosuis DSM 18011]
          Length = 170

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          + + I +   LSR D    +     ++ +  + G+A+ I     F++  +  
Sbjct: 39 ITEKIKEMSSLSRGDIRSVLMNFIEKLKEQLLEGKAVNIEGLGVFNLSLRSQ 90


>gi|260172873|ref|ZP_05759285.1| hypothetical protein BacD2_13473 [Bacteroides sp. D2]
 gi|315921156|ref|ZP_07917396.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695031|gb|EFS31866.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 161

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 21/99 (21%)

Query: 24  DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV--- 80
                +  L + +      G+ +K+  F T        R   N ++     I+ + V   
Sbjct: 51  QVKLVLDGLLDSLEGYMDEGKTVKLGEFGTL-------RPTFNAKSG----IEAKDVDSS 99

Query: 81  ------VVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
                 +VF   + LK  +   M   K    DV + SGS
Sbjct: 100 NIIVREIVFTPGTQLKTMLNK-MSISKYVPLDVVATSGS 137


>gi|258647755|ref|ZP_05735224.1| putative non-specific DNA-binding protein [Prevotella tannerae
          ATCC 51259]
 gi|260852607|gb|EEX72476.1| putative non-specific DNA-binding protein [Prevotella tannerae
          ATCC 51259]
          Length = 136

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          +V  I K  G+S       +  L  EI  +   G ++++    +F
Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEILQTLSDGNSVRLGDLGSF 79


>gi|330893726|gb|EGH26387.1| hypothetical protein PSYMO_35066 [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 39

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 15/34 (44%)

Query: 68  QTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101
            T   ++I  ++V+ F  +  L   I +    +K
Sbjct: 1   STGAAIEIAAKKVIKFVPAKRLNDAINNGAPQKK 34


>gi|112253257|gb|ABI14216.1| major basic nuclear protein [Pfiesteria piscicida]
          Length = 114

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           K+IT+  L  +IS E  + + D ++ +T L   +     +   + +   A    + K +
Sbjct: 19 GKSITKGGLADAISAETEVKKSDCSKVLTALAEIVAKEVKKTGKVIVPGIARIVTRTKKA 78


>gi|255693884|ref|ZP_05417559.1| putative integration host factor IHF alpha subunit [Bacteroides
          finegoldii DSM 17565]
 gi|260620313|gb|EEX43184.1| putative integration host factor IHF alpha subunit [Bacteroides
          finegoldii DSM 17565]
          Length = 371

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 51 FA--TFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
          F   TF +    SR   N+ T +  +I     V F   + L+  I  
Sbjct: 1  FGSNTFKLIDVDSRESVNVNTGERFQIKGHTKVSFSPDANLRDTINK 47


>gi|212694042|ref|ZP_03302170.1| hypothetical protein BACDOR_03568 [Bacteroides dorei DSM 17855]
 gi|237727812|ref|ZP_04558293.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|212663574|gb|EEB24148.1| hypothetical protein BACDOR_03568 [Bacteroides dorei DSM 17855]
 gi|229434668|gb|EEO44745.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 157

 Score = 35.7 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 21/50 (42%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          +T   L K +S +  +SR D    +T   + + ++   G+ +       F
Sbjct: 32 LTLKQLSKRVSSQTTVSRADVVAVLTATVDNLLEALTEGKQVDFGELGKF 81


>gi|260885760|ref|ZP_05735715.2| putative non-specific DNA-binding protein [Prevotella tannerae
          ATCC 51259]
 gi|260852150|gb|EEX72019.1| putative non-specific DNA-binding protein [Prevotella tannerae
          ATCC 51259]
          Length = 136

 Score = 35.7 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          +V  I K  G+S       +  L  EI  +   G ++++    +F
Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEILQTLSDGNSVRLGDLGSF 79


>gi|160882883|ref|ZP_02063886.1| hypothetical protein BACOVA_00845 [Bacteroides ovatus ATCC 8483]
 gi|156111747|gb|EDO13492.1| hypothetical protein BACOVA_00845 [Bacteroides ovatus ATCC 8483]
          Length = 205

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/116 (12%), Positives = 44/116 (37%), Gaps = 16/116 (13%)

Query: 7   RSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + + ++ +S+     +       V  + +E+ ++   G  +++     F +  K      
Sbjct: 34  KKEFMERVSRSSQTFNYNVIDAVVGVVLDELAETLAEGYIVELGELGHFSISLKC----- 88

Query: 66  NLQTNQEV---KIDPRRV----VVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY 114
              T++ +   +I    +    V  + S   K++I  ++   + +K   +S    +
Sbjct: 89  ---THKVMTKREIRAESICFDNVHLRTSKEFKRKIKREIELERVDKSKHSSQKVEF 141


>gi|260892769|ref|YP_003238866.1| hypothetical protein Adeg_0877 [Ammonifex degensii KC4]
 gi|260864910|gb|ACX52016.1| hypothetical protein Adeg_0877 [Ammonifex degensii KC4]
          Length = 140

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 17/93 (18%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTR-FVTTLFNEICDSAVRGEAIKISSFATFHVKQK--GS 61
          +  ++L +  +++ G  +KD     +      + +   R   +++     F +       
Sbjct: 1  MKTAELCRLAAEKGGYWKKDVRECLLVHFPAALVEGLKRDGKVRLKGVGVFFLASPPGKR 60

Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
          R G                V F+ SS+L KR+ 
Sbjct: 61 REGV--------------YVRFRPSSLLLKRLN 79


>gi|257468208|ref|ZP_05632304.1| hypothetical protein FulcA4_02652 [Fusobacterium ulcerans ATCC
          49185]
 gi|317062493|ref|ZP_07926978.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688169|gb|EFS25004.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 65

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 7/61 (11%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 5  ITRSDLVKSISKEFGLSR--KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62
          +T  + +    K+   S+  K+    +   +N +  +    + +   ++  F  +++ +R
Sbjct: 1  MTEEEFI-RFYKKRNNSKSHKEVREKIDLFWNVLLKALDEDKKVIFKNWGVFEKRERKAR 59

Query: 63 V 63
           
Sbjct: 60 K 60


>gi|13488449|ref|NP_109456.1| hypothetical protein mll9600 [Mesorhizobium loti MAFF303099]
 gi|14028203|dbj|BAB54795.1| mll9600 [Mesorhizobium loti MAFF303099]
          Length = 163

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 8   SDLVKSI---SKEFGLSRKDSTRFVTTLFNEICDSAVR--GEAIKISSFA 52
           +DL   +   +++ GLSR+D +  V ++F  I ++     G  +  S + 
Sbjct: 114 ADLADQLMAAAEKQGLSRRDISEEVGSVFQVILEAMQNRSGGRLYSSRWG 163


>gi|319901615|ref|YP_004161343.1| DNA-binding protein [Bacteroides helcogenes P 36-108]
 gi|319416646|gb|ADV43757.1| DNA-binding protein [Bacteroides helcogenes P 36-108]
          Length = 161

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 14/95 (14%)

Query: 25  STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL--QTNQEVKIDP----R 78
               +  L + +     +G ++++  F  F       R G N   QT  E  +D     R
Sbjct: 52  VKMVIDGLIDTLNMDLDKGYSVQLGDFGCF-------RPGLNAKSQTGAE-TVDANTVYR 103

Query: 79  RVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113
           R ++F   S  K  +      +     D    +GS
Sbjct: 104 RKIIFYPGSYFKNMLTKATVEKLVLGKDNVGSAGS 138


>gi|258648816|ref|ZP_05736285.1| putative non-specific DNA-binding protein [Prevotella tannerae
          ATCC 51259]
 gi|260850978|gb|EEX70847.1| putative non-specific DNA-binding protein [Prevotella tannerae
          ATCC 51259]
          Length = 140

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          +V  I K  G+S       +  L  EI  +   G ++++    +F
Sbjct: 39 IVGRIEKRSGVSSASVKAVLDALQYEILQTLSDGNSVRLGDLGSF 83


>gi|258648255|ref|ZP_05735724.1| putative non-specific DNA binding protein [Prevotella tannerae
          ATCC 51259]
 gi|260852166|gb|EEX72035.1| putative non-specific DNA binding protein [Prevotella tannerae
          ATCC 51259]
          Length = 136

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          +V  I K  G+S       +  L  EI  +   G ++++    +F
Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEILQTLSDGNSVRLGDLGSF 79


>gi|255014515|ref|ZP_05286641.1| hypothetical protein B2_11444 [Bacteroides sp. 2_1_7]
          Length = 148

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 19/45 (42%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53
          +L +SI++E  L+  D       L   +      G  +++  F +
Sbjct: 38 ELCESIAEETALTSADVKSCFDRLPRILARHLKEGRNVQLGEFGS 82


>gi|304384031|ref|ZP_07366486.1| possible DNA-binding protein [Prevotella marshii DSM 16973]
 gi|304334819|gb|EFM01094.1| possible DNA-binding protein [Prevotella marshii DSM 16973]
          Length = 201

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 20/94 (21%)

Query: 12  KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS---------- 61
           + + K   ++  D    +  +  E+    + G  + +     F +  KG           
Sbjct: 37  ERVEKATAMTVADLVGTLEAIRYELAQQLMLGNRVHLPGLGYFSLSVKGELYEDPKTHKM 96

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95
           R+ RN +          R V F+    L K + D
Sbjct: 97  RL-RNPR---------VRTVNFRPEKQLLKTLAD 120


>gi|260172938|ref|ZP_05759350.1| hypothetical protein BacD2_13798 [Bacteroides sp. D2]
 gi|315921219|ref|ZP_07917459.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695094|gb|EFS31929.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 162

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 10/87 (11%)

Query: 13  SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQE 72
            +S+  G+ RK     V+ L +++ +    G++++I  F  F    +         T+ E
Sbjct: 40  KVSELCGVHRKVVDLVVSGLVDKMAEDIDDGKSVQIGEFGIFTPTIRAK------STDDE 93

Query: 73  VKIDPRRVVV----FKASSILKKRIMD 95
            ++  + +V     F    I K  + D
Sbjct: 94  KEVLSKSIVQRKILFYPGKIFKNTLED 120


>gi|154148742|ref|YP_001405859.1| hypothetical protein CHAB381_0253 [Campylobacter hominis ATCC
           BAA-381]
 gi|153804751|gb|ABS51758.1| hypothetical protein CHAB381_0253 [Campylobacter hominis ATCC
           BAA-381]
          Length = 301

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS 49
           + + DL++SI+ + G+  K +   ++ L   I D    G  + I 
Sbjct: 139 MNKKDLLESIAFKLGVMPKRTG--ISHLIEAIKDGLSGGNRVLII 181


>gi|333030364|ref|ZP_08458425.1| Peptidoglycan-binding lysin domain protein [Bacteroides coprosuis
          DSM 18011]
 gi|332740961|gb|EGJ71443.1| Peptidoglycan-binding lysin domain protein [Bacteroides coprosuis
          DSM 18011]
          Length = 482

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          +     +  ++ +  +   D + ++ T                   F  F V+++   V 
Sbjct: 1  MNSQLFIDKLASKINMQEADVSIYLETFVLGFATELQTYRKASFDPFGVFEVEKRLEYVE 60

Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89
          +  +   ++   P   VVF +S+IL
Sbjct: 61 KR-EDGSKILNPPSLKVVFSSSAIL 84


>gi|153806737|ref|ZP_01959405.1| hypothetical protein BACCAC_01008 [Bacteroides caccae ATCC 43185]
 gi|149131414|gb|EDM22620.1| hypothetical protein BACCAC_01008 [Bacteroides caccae ATCC 43185]
          Length = 176

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 11 VKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          ++++++E      LS +D +  + +    +    V G+ +K+     F
Sbjct: 38 IETLAREIESIGSLSVEDVSHVMKSFVRAMKKVLVAGDKVKVDGLGIF 85


>gi|237722941|ref|ZP_04553422.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|293370718|ref|ZP_06617268.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|229447463|gb|EEO53254.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292634242|gb|EFF52781.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
          Length = 206

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/116 (12%), Positives = 44/116 (37%), Gaps = 16/116 (13%)

Query: 7   RSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + + ++ +S+     +       V  + +E+ ++   G  +++     F +  K      
Sbjct: 34  KKEFMERVSRSSQTFNYNVIDAVVGVVLDELAETLAEGYIVELGELGHFSISLKC----- 88

Query: 66  NLQTNQEV---KIDPRRV----VVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY 114
              T++ +   +I    +    V  + S   K++I  ++   + +K   +S    +
Sbjct: 89  ---THKVMTKREIRAESICFDNVHLRTSKEFKRKIKREIELERVDKSKHSSQKVEF 141


>gi|229495520|ref|ZP_04389253.1| putative DNA-binding protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229317503|gb|EEN83403.1| putative DNA-binding protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 160

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 13/113 (11%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFA--TFHVKQKGSRVGRN 66
           DL+  I +   +SR D    ++TL   I D   +G  ++I       F+++ K ++  + 
Sbjct: 37  DLISLIGQISSISRGDVLSVISTLTRLIADELAKGNIVEIGELGRLRFNMRSKAAKSVKE 96

Query: 67  LQTNQEVKIDPRRVVVFKASSILKKR-------IMDDMRGRKCNKDDVTSPSG 112
             T+  +       + F    +LK         + D+       K   T+P  
Sbjct: 97  F-THNNILTP---TLHFLPGMLLKDARRRIRFTLADEKGKSTEGKGKPTTPPN 145


>gi|218260329|ref|ZP_03475701.1| hypothetical protein PRABACTJOHN_01364 [Parabacteroides johnsonii
          DSM 18315]
 gi|218224614|gb|EEC97264.1| hypothetical protein PRABACTJOHN_01364 [Parabacteroides johnsonii
          DSM 18315]
          Length = 216

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFA 52
           +  L + I     ++  D    +++L + + +    G  I I    
Sbjct: 37 NK--LTQRIHSRCTVTPADVKAVLSSLSDVVIEELKDGNRIHIEGLG 81


>gi|153809082|ref|ZP_01961750.1| hypothetical protein BACCAC_03390 [Bacteroides caccae ATCC 43185]
 gi|149128415|gb|EDM19634.1| hypothetical protein BACCAC_03390 [Bacteroides caccae ATCC 43185]
          Length = 212

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 12/93 (12%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF-----HVKQKG 60
           T+ DL   I     L+  D T  +  L   + +    G  + +     F       ++  
Sbjct: 34  TK-DLRSRIQSRCTLNEVDVTAVLDALSQVMGEELCEGRQVHLDGIGYFYPTLTATEEIA 92

Query: 61  SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
           +      + N +VK+   + + F++   LK  +
Sbjct: 93  ADT---PRRNTKVKL---KGIQFRSDQKLKNSV 119


>gi|312984374|ref|ZP_07791713.1| conserved hypothetical protein [Lactobacillus crispatus CTV-05]
 gi|310894218|gb|EFQ43301.1| conserved hypothetical protein [Lactobacillus crispatus CTV-05]
          Length = 40

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 6/39 (15%), Positives = 17/39 (43%)

Query: 3  KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV 41
          +TI++  LV  I+ +   ++ D    +    + +  +  
Sbjct: 2  ETISKKQLVDQIAAKTDATKTDINTILDAYIDVVKSNVA 40


>gi|253571163|ref|ZP_04848570.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298386726|ref|ZP_06996281.1| DNA-binding protein [Bacteroides sp. 1_1_14]
 gi|251839116|gb|EES67200.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298260400|gb|EFI03269.1| DNA-binding protein [Bacteroides sp. 1_1_14]
          Length = 156

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 22/98 (22%)

Query: 8   SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK------QKGS 61
            +L + +    G  R      +  + + I      G+++ I    TF         ++  
Sbjct: 38  KELAQVVELRGGFHRGQVEGILVEVADAIRYLLSMGQSVTIDGLGTFQTALTSPGFERPE 97

Query: 62  RVGRNLQTNQEVKIDPRRV----VVFKASSILKKRIMD 95
                       ++ P +V    V F A+S L+ R+  
Sbjct: 98  ------------QVTPGQVSVSRVYFVANSALRDRMKK 123


>gi|29349018|ref|NP_812521.1| hypothetical protein BT_3610 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29340925|gb|AAO78715.1| Histone-like bacterial DNA-binding protein [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 156

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 22/98 (22%)

Query: 8   SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK------QKGS 61
            +L + +    G  R      +  + + I      G+++ I    TF         ++  
Sbjct: 38  KELAQVVELRGGFHRGQVEGILVEVADAIRYLLSMGQSVTIDGLGTFQTALTSPGFERPE 97

Query: 62  RVGRNLQTNQEVKIDPRRV----VVFKASSILKKRIMD 95
                       ++ P +V    V F A+S L+ R+  
Sbjct: 98  ------------QVTPGQVSVSRVYFVANSALRDRMKK 123


>gi|294672895|ref|YP_003573511.1| DNA-binding protein [Prevotella ruminicola 23]
 gi|294473265|gb|ADE82654.1| putative DNA-binding protein [Prevotella ruminicola 23]
          Length = 193

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          +L   I ++  + + D    +  L   +      G+ IK++    F V
Sbjct: 36 ELADFIQRQASVKKSDIKAVLQELGEALKHFFEMGQKIKLNGIGIFKV 83


>gi|332306957|ref|YP_004434808.1| CsbD family protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174286|gb|AEE23540.1| CsbD family protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 65

 Score = 35.3 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFN 34
           R++LV  I + +G S++++ R V   F+
Sbjct: 35 NRTELVGKIQERYGKSKEEAQREVDEFFD 63


>gi|237716756|ref|ZP_04547237.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405531|ref|ZP_06082081.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647595|ref|ZP_06725167.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294805831|ref|ZP_06764706.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229442739|gb|EEO48530.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356406|gb|EEZ05496.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637053|gb|EFF55499.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294446968|gb|EFG15560.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 203

 Score = 35.3 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 22/103 (21%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           + +  + K  G+SR      + +  NE+ D    G  +++     F V  +G        
Sbjct: 36  EFLDRVHKFTGISRSLLVGAMQSFQNELRDLLANGWIVELGDIGYFSVSLQGP------- 88

Query: 69  TNQEVKIDPRRVVV----------FKASSILKKRIMDDMRGRK 101
                 +  ++ V           F+A    KK +   MR  +
Sbjct: 89  -----PVMKKKDVHAQSISLKNINFRAGKQFKKEVAQQMRPER 126


>gi|126668684|ref|ZP_01739635.1| Tn5044 transposase [Marinobacter sp. ELB17]
 gi|126626862|gb|EAZ97508.1| Tn5044 transposase [Marinobacter sp. ELB17]
          Length = 411

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 11  VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTN 70
           V+ +++E   +++D    +  +  E+       +  ++  F+T     + +R   N  T 
Sbjct: 123 VRDLAREAATTKQDLADIINVVIEELVR-----QRFELPGFSTLQRTARQARSTVN--TG 175


>gi|253581506|ref|ZP_04858731.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251836576|gb|EES65111.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 93

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSIL 89
          +FN I +     E +K  +  TF + ++  R   +  +N+  +I P++ + F  S +L
Sbjct: 33 IFNLIAEVIAMDEEVKFKNKGTFSLLKRKKRRIGSPTSNEVREIIPKKTIKFVQSKVL 90


>gi|167840351|ref|ZP_02467035.1| DNA-binding protein BpH2 [Burkholderia thailandensis MSMB43]
          Length = 117

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATF---HVKQKG 60
           T++ L   I++   +  K     +  L N +  S   +G     +          V  K 
Sbjct: 21  TKASLATHIAERAAIEVKAVKAVLAALENVVLGSVHKKGAGEFTLPGLLKITAQAVPAKK 80

Query: 61  SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92
            R G++  T +E     +     V  +A   LK  
Sbjct: 81  KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 115


>gi|325855865|ref|ZP_08171908.1| putative DNA-binding protein [Prevotella denticola CRIS 18C-A]
 gi|325483751|gb|EGC86714.1| putative DNA-binding protein [Prevotella denticola CRIS 18C-A]
          Length = 198

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 12/106 (11%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           L + I +   L+  D    V  L  E+ +    G  + +     F +  KG  +  + +T
Sbjct: 35  LCQRIQQATSLTTADIIGTVAALKTELAEELKSGNTVHLPGIGFFSLALKGD-MYEDPKT 93

Query: 70  ------NQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109
                 N  V     R + F+      + + +     K  KD   S
Sbjct: 94  HRHHLRNVAV-----RKIRFRPDKDFHEALGEMEFENKTYKDGTPS 134


>gi|224536531|ref|ZP_03677070.1| hypothetical protein BACCELL_01406 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521787|gb|EEF90892.1| hypothetical protein BACCELL_01406 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 136

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 5/72 (6%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69
           +    S    L  +D    V T+   +      G+++ +     F V    S  G   QT
Sbjct: 36  IAAEASVRSSLPPEDVIAAVGTVARLMRKHLAMGDSVTLPGLGIFTVS--ASSEGC--QT 91

Query: 70  NQEVKIDPRRVV 81
            +E     +   
Sbjct: 92  PEECT-PAKVKP 102


>gi|224026068|ref|ZP_03644434.1| hypothetical protein BACCOPRO_02821 [Bacteroides coprophilus DSM
           18228]
 gi|224019304|gb|EEF77302.1| hypothetical protein BACCOPRO_02821 [Bacteroides coprophilus DSM
           18228]
          Length = 211

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 18/87 (20%)

Query: 20  LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV-KIDPR 78
           +S  D    +T L + + D+ + G  + +     F +            TN E+  +   
Sbjct: 46  VSESDILAVLTALSDVMVDAFLEGHRVYLRGLGYFDIT----------LTNDEIRSLKEG 95

Query: 79  RV-------VVFKASSILKKRIMDDMR 98
            V       V F   + L+KR+   M+
Sbjct: 96  NVRKVHFKSVKFVPEASLRKRLERGMK 122


>gi|83717539|ref|YP_438900.1| DNA-binding protein BpH2 [Burkholderia thailandensis E264]
 gi|83651364|gb|ABC35428.1| DNA-binding protein BpH2 [Burkholderia thailandensis E264]
          Length = 147

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATF---HVKQKG 60
           T++ L   I++   +  K     +  L N +  S   +G     +          V  K 
Sbjct: 51  TKASLATHIAERAAIEVKAVKAVLAALENVVLGSIHKKGAGEFTLPGLLKITAQAVPAKK 110

Query: 61  SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92
            R G++  T +E     +     V  +A   LK  
Sbjct: 111 KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 145


>gi|212694081|ref|ZP_03302209.1| hypothetical protein BACDOR_03607 [Bacteroides dorei DSM 17855]
 gi|237710282|ref|ZP_04540763.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|265751089|ref|ZP_06087152.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212663301|gb|EEB23875.1| hypothetical protein BACDOR_03607 [Bacteroides dorei DSM 17855]
 gi|229455744|gb|EEO61465.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263237985|gb|EEZ23435.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 207

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 16/47 (34%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          + L   I K   L+  D    +  L   + +    G+ + +     F
Sbjct: 36 AQLRARIQKHCTLTETDVVAVLDALSRAMGEELAEGKQVHLDGIGFF 82


>gi|57864916|gb|AAW57089.1| ergot alkaloid biosynthetic protein A [Claviceps purpurea]
          Length = 290

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 28/69 (40%), Gaps = 9/69 (13%)

Query: 5   ITRSDLVKSISKEFGLSRKDS--TRFVTTLFNE------ICDSAVRGEAIKISSFATFHV 56
           +T  +L + + +E G++ +++     + ++         + D       +K   F  F +
Sbjct: 222 MTEGELAEKLMEE-GVTPEEAYMHAAMDSMIKSGSEERVVSDEVKEWTGVKPRGFINFAL 280

Query: 57  KQKGSRVGR 65
            +K +   R
Sbjct: 281 SEKAAWRAR 289


>gi|317479874|ref|ZP_07938991.1| hypothetical protein HMPREF1007_02108 [Bacteroides sp. 4_1_36]
 gi|316903948|gb|EFV25785.1| hypothetical protein HMPREF1007_02108 [Bacteroides sp. 4_1_36]
          Length = 214

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 22/89 (24%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF------- 54
            +T TR +L + I+   G S+  +   +  L   +      G ++KI     F       
Sbjct: 29  GQTGTR-ELAEYIAMTSGFSKGVTEGIICELGEALAHEMGMGRSVKIEGLGVFTPALSIY 87

Query: 55  ----------HVKQKGSR----VGRNLQT 69
                        ++ +R     G N +T
Sbjct: 88  PDKEREQPQESTTKRNARSIYVSGVNFRT 116


>gi|300727889|ref|ZP_07061268.1| putative DNA-binding protein [Prevotella bryantii B14]
 gi|299774873|gb|EFI71486.1| putative DNA-binding protein [Prevotella bryantii B14]
          Length = 194

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 12 KSISKEFGL----SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          K ++K  GL    +  D    +++L  EI      G+ +K+    +F +
Sbjct: 34 KVLAKNIGLRCTVTYPDILAVISSLVTEISLQLQEGKRVKLDGLGSFKI 82


>gi|313205067|ref|YP_004043724.1| DNA-binding protein [Paludibacter propionicigenes WB4]
 gi|312444383|gb|ADQ80739.1| DNA-binding protein [Paludibacter propionicigenes WB4]
          Length = 127

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 17/99 (17%)

Query: 5   ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
           IT   + + I++    +S  D    +  L   +      GE ++   F TF +  K    
Sbjct: 32  ITLKQISREIAENSSTVSDTDVLAVLNDLTKILNRHLKNGEIVRFGDFGTFQINIKSE-- 89

Query: 64  GRNLQTNQE-------VKIDPRRVVVFKASSILKKRIMD 95
                   E         I   +V  ++  S +++ + +
Sbjct: 90  ------GAESEEKFTTAMITDTKV-TYRPGSDVREMLNN 121


>gi|332140529|ref|YP_004426267.1| Tn5044 transposase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550551|gb|AEA97269.1| Tn5044 transposase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 990

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 11  VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTN 70
           V+ +++E   +++D    +  +  E+       +  ++  F+T     + +R   N  T 
Sbjct: 123 VRDLAREAATTKQDLADIINVVIEELVR-----QRFELPGFSTLQRTARQARSQVN--TG 175


>gi|261820859|ref|YP_003258965.1| hypothetical protein Pecwa_1563 [Pectobacterium wasabiae WPP163]
 gi|261604872|gb|ACX87358.1| conserved hypothetical protein [Pectobacterium wasabiae WPP163]
          Length = 48

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR 42
          M+K ++++++V+++S+ F +SR D  +       +I     R
Sbjct: 1  MTKKMSKAEIVEALSEWFDVSRYDVLK--DLTLEQIYAELER 40


>gi|194337423|ref|YP_002019217.1| Sporulation domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309900|gb|ACF44600.1| Sporulation domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 355

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 23/61 (37%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          M   +T  D V  ++    + R+ ++ F+    + +    +    + +    +F V    
Sbjct: 1  MGAVMTNHDCVGELAGLLDVERQVASSFLIDFSSAMVAELLAVRKLSLKGLGSFTVTHHP 60

Query: 61 S 61
          +
Sbjct: 61 A 61


>gi|255965914|gb|ACU45245.1| major basic nuclear protein [Karlodinium veneficum]
          Length = 91

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG--R 65
          S L K+++ E GL +K  +  + +L +       +     I        + K +     R
Sbjct: 2  SALAKALATEHGLKQKACSDVLNSLASIARTEVKKAGIFSIPGLCRIKTRTKPATKAGVR 61

Query: 66 NLQTNQEVKI---DPRRVVVFKASSILKKRI 93
          N    +EVK+     R +V    ++ LKK+I
Sbjct: 62 N-VFGKEVKVKAKPARTIVKGYCAAALKKQI 91


>gi|167577274|ref|ZP_02370148.1| DNA-binding protein BpH2 [Burkholderia thailandensis TXDOH]
 gi|167615413|ref|ZP_02384048.1| DNA-binding protein BpH2 [Burkholderia thailandensis Bt4]
 gi|257141985|ref|ZP_05590247.1| DNA-binding protein BpH2 [Burkholderia thailandensis E264]
          Length = 117

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATF---HVKQKG 60
           T++ L   I++   +  K     +  L N +  S   +G     +          V  K 
Sbjct: 21  TKASLATHIAERAAIEVKAVKAVLAALENVVLGSIHKKGAGEFTLPGLLKITAQAVPAKK 80

Query: 61  SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92
            R G++  T +E     +     V  +A   LK  
Sbjct: 81  KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 115


>gi|225017768|ref|ZP_03706960.1| hypothetical protein CLOSTMETH_01697 [Clostridium methylpentosum
           DSM 5476]
 gi|224949419|gb|EEG30628.1| hypothetical protein CLOSTMETH_01697 [Clostridium methylpentosum
           DSM 5476]
          Length = 482

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 20/84 (23%)

Query: 3   KTITRSDL-VKSISKEFGLSRKDSTRFVTTLFNEI----------------CDSAVRGEA 45
           K++ R  L +  IS    LS    +  +  +   +                 +   RGE 
Sbjct: 105 KSMLRKQLGIDVISVSEPLSDDKMSILIEAMIEAMDEYYSINLSEEVTRGMTEKVRRGEP 164

Query: 46  IKISSFATFHVKQKGSRVGRNLQT 69
           + I +F  + +K+K      N +T
Sbjct: 165 VSIPAFG-YSIKEKQYYP--NPKT 185


>gi|160890585|ref|ZP_02071588.1| hypothetical protein BACUNI_03028 [Bacteroides uniformis ATCC 8492]
 gi|156859584|gb|EDO53015.1| hypothetical protein BACUNI_03028 [Bacteroides uniformis ATCC 8492]
          Length = 208

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 22/89 (24%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF------- 54
            +T TR +L + I+   G S+  +   +  L   +      G ++KI     F       
Sbjct: 23  GQTGTR-ELAEYIAMTSGFSKGVTEGIICELGEALAHEMGMGRSVKIEGLGVFTPALSIY 81

Query: 55  ----------HVKQKGSR----VGRNLQT 69
                        ++ +R     G N +T
Sbjct: 82  PDKEREQPQESTTKRNARSIYVSGVNFRT 110


>gi|72537504|gb|AAZ73681.1| hypothetical protein [Lyngbya majuscula CCAP 1446/4]
          Length = 680

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 11  VKSISKEFGLSRKDST---RFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
           +  I  +  L + +       + + F+    S   GE + + S     V ++   + R+ 
Sbjct: 275 ISKIDSKTQLLKSEMKTPTEILNSAFDTASQSLKTGEFLMLPS----EVVEQIEYICRHP 330

Query: 68  QTNQEV 73
           Q    +
Sbjct: 331 QNKAGI 336


>gi|161521145|ref|YP_001584572.1| histone family protein DNA-binding protein [Burkholderia
           multivorans ATCC 17616]
 gi|189352677|ref|YP_001948304.1| histone-like DNA-binding protein [Burkholderia multivorans ATCC
           17616]
 gi|221212497|ref|ZP_03585474.1| histone H1 homolog BpH2 [Burkholderia multivorans CGD1]
 gi|160345195|gb|ABX18280.1| histone family protein DNA-binding protein [Burkholderia
           multivorans ATCC 17616]
 gi|189336699|dbj|BAG45768.1| histone-like DNA-binding protein [Burkholderia multivorans ATCC
           17616]
 gi|221167596|gb|EEE00066.1| histone H1 homolog BpH2 [Burkholderia multivorans CGD1]
          Length = 147

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATF---HVKQKG 60
           T++ L   I++   +  K     +  L N +  S   +G     +          V  K 
Sbjct: 51  TKASLAAHIAERAAVEVKAVKAVLAALENVVLGSIHKKGAGEFTLPGLLKITAQAVPAKK 110

Query: 61  SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92
            R G++  T +E     +     V  +A   LK  
Sbjct: 111 KRFGKDPFTGEERWFPAKPATVRVKARALKKLKDA 145


>gi|109898051|ref|YP_661306.1| CsbD-like [Pseudoalteromonas atlantica T6c]
 gi|109700332|gb|ABG40252.1| CsbD-like protein [Pseudoalteromonas atlantica T6c]
          Length = 65

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 19/29 (65%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNE 35
          R++LV  I +++G S++++ R V   F+ 
Sbjct: 36 RTELVGKIQEKYGKSKEEAEREVDDFFDS 64


>gi|332877124|ref|ZP_08444875.1| putative DNA-binding protein [Capnocytophaga sp. oral taxon 329
          str. F0087]
 gi|332685014|gb|EGJ57860.1| putative DNA-binding protein [Capnocytophaga sp. oral taxon 329
          str. F0087]
          Length = 143

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 20/46 (43%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          ++   IS    ++R D    ++ L  +I  +   G+ + +    +F
Sbjct: 34 EIATRISGTCTVTRHDCLAVLSALQEQIIYALQEGKRVHLGDIGSF 79


>gi|300871249|ref|YP_003786122.1| hypothetical protein BP951000_1640 [Brachyspira pilosicoli
          95/1000]
 gi|300688950|gb|ADK31621.1| hypothetical protein BP951000_1640 [Brachyspira pilosicoli
          95/1000]
          Length = 503

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 12 KSISKEFGLSRKDS--TRFVTTLFNEICDSAVRGEAIKISSFATF 54
           +I++++   +  +   +    +F  I      GE + I +F TF
Sbjct: 29 NTITEKYDTVKNRAIKKKLYEMIFENIRHLVDNGEKVYIENFGTF 73


>gi|167590247|ref|ZP_02382635.1| histone family protein DNA-binding protein [Burkholderia ubonensis
           Bu]
          Length = 117

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATF---HVKQKG 60
           T++ L   I++   +  K     +  L N +  S   +G     +          V  K 
Sbjct: 21  TKASLAAHIAERAAVEVKAVKAVLAALENVVLGSVHKKGAGEFTLPGLLKITAQAVPAKK 80

Query: 61  SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92
            R G++  T +E     +     V  +A   LK  
Sbjct: 81  KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 115


>gi|304382270|ref|ZP_07364777.1| possible DNA-binding protein [Prevotella marshii DSM 16973]
 gi|304336627|gb|EFM02856.1| possible DNA-binding protein [Prevotella marshii DSM 16973]
          Length = 214

 Score = 34.9 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 24/90 (26%)

Query: 12  KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS---------- 61
           + I K   L+  D       +  E+ D  + G  + +     F +  KG           
Sbjct: 37  QHIEKATALTTADLIGAFEAVKTEMADQLMLGNRVHLPGLGYFSLSIKGELYEDPKTHRF 96

Query: 62  RVGRNL--QTNQEVKIDPRRVVVFKASSIL 89
           R+ RN   +T           V F+    L
Sbjct: 97  RL-RNPYVRT-----------VNFRPEKRL 114


>gi|88808145|ref|ZP_01123656.1| hypothetical protein WH7805_08281 [Synechococcus sp. WH 7805]
 gi|88788184|gb|EAR19340.1| hypothetical protein WH7805_08281 [Synechococcus sp. WH 7805]
          Length = 89

 Score = 34.9 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          ++  D+  SIS+   +      +    L   I ++   GE +++     F  + + +R  
Sbjct: 1  MSIKDITASISEAEKIPAGKVRKITKALLERIGEAIDNGEKLQLPGL-VFTPRTQPAREA 59


>gi|167764897|ref|ZP_02437018.1| hypothetical protein BACSTE_03289 [Bacteroides stercoris ATCC
           43183]
 gi|167697566|gb|EDS14145.1| hypothetical protein BACSTE_03289 [Bacteroides stercoris ATCC
           43183]
          Length = 212

 Score = 34.9 bits (80), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 17/89 (19%)

Query: 13  SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF--------HVKQKGSRVG 64
            I +   L+  D T  +  L + +      G  + +     F         V  +  R  
Sbjct: 40  KIQERCSLTETDVTAVLDALSHVLGQELGDGRQVHLDGIGYFHPTLKCIEEVTAETKRK- 98

Query: 65  RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
               T   +     + + F+A   LK  +
Sbjct: 99  ---NTKVRL-----KGIKFRADQALKNEV 119


>gi|158340432|ref|YP_001521787.1| hypothetical protein AM1_C0360 [Acaryochloris marina MBIC11017]
 gi|158310673|gb|ABW32287.1| hypothetical protein AM1_C0360 [Acaryochloris marina MBIC11017]
          Length = 63

 Score = 34.9 bits (80), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKI 48
          + +S+LV  I+   G++ K +   +T +   I +    GE I +
Sbjct: 1  MNKSELVDVIAGNIGVTMKQADTIITAITGTIIEIVSSGEKISL 44


>gi|257469614|ref|ZP_05633706.1| hypothetical protein FulcA4_09758 [Fusobacterium ulcerans ATCC
           49185]
 gi|317063850|ref|ZP_07928335.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689526|gb|EFS26361.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 98

 Score = 34.9 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 29/78 (37%)

Query: 24  DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVF 83
           ++ + V   +N +       + I I ++  F  K   SR        +     P+ ++ F
Sbjct: 21  ETKKKVDLFWNALFKLLNDEKKIVIKNWGIFEKKSVKSRKVVVPTWTEARYTKPKEIIKF 80

Query: 84  KASSILKKRIMDDMRGRK 101
           +A   L K++       +
Sbjct: 81  RAGERLIKKVNKSGEANE 98


>gi|171318607|ref|ZP_02907755.1| histone family protein DNA-binding protein [Burkholderia ambifaria
           MEX-5]
 gi|171096205|gb|EDT41124.1| histone family protein DNA-binding protein [Burkholderia ambifaria
           MEX-5]
          Length = 118

 Score = 34.9 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFH---VKQKG 60
           T++ L   I++   +  K     +T L N +  S   +G     +          V  K 
Sbjct: 22  TKASLATHIAERAAVEVKAVKAVLTALENVVLGSVHKKGAGEFTLPGLLKITAQVVPAKK 81

Query: 61  SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92
            R G++  T +E     +     V  +A   LK  
Sbjct: 82  KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 116


>gi|255693575|ref|ZP_05417250.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565]
 gi|260620640|gb|EEX43511.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565]
          Length = 161

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 20/92 (21%)

Query: 8   SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
           S L K++S   G  R      +  L + +      G+ +K+  F T        R   N 
Sbjct: 35  SKLCKNVSLICGTHRGQVKLVLDGLLDSLEGYMDEGKTVKLGEFGTL-------RPTFNA 87

Query: 68  QTNQEVKIDPRRV---------VVFKASSILK 90
           ++     I+ + V         +VF   S LK
Sbjct: 88  KSG----IEAKDVDSSNIIVRKIVFTPGSQLK 115


>gi|224538138|ref|ZP_03678677.1| hypothetical protein BACCELL_03029 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520266|gb|EEF89371.1| hypothetical protein BACCELL_03029 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 167

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 8/65 (12%), Positives = 22/65 (33%), Gaps = 6/65 (9%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG---- 64
            L + ++++   +  D    +  L + +    +    +++    TF V  +    G    
Sbjct: 36  QLGEMVAEKCSATPGDVHNVIRNLMSVMRMQLLNSRTVRLDGLGTFTVIARTRGKGVDKE 95

Query: 65  --RNL 67
              N 
Sbjct: 96  KDVNP 100


>gi|170702375|ref|ZP_02893266.1| histone family protein DNA-binding protein [Burkholderia ambifaria
           IOP40-10]
 gi|172062904|ref|YP_001810555.1| histone family protein DNA-binding protein [Burkholderia ambifaria
           MC40-6]
 gi|170132710|gb|EDT01147.1| histone family protein DNA-binding protein [Burkholderia ambifaria
           IOP40-10]
 gi|171995421|gb|ACB66339.1| histone family protein DNA-binding protein [Burkholderia ambifaria
           MC40-6]
          Length = 149

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFH---VKQKG 60
           T++ L   I++   +  K     +T L N +  S   +G     +          V  K 
Sbjct: 53  TKASLATHIAERAAVEVKAVKAVLTALENVVLGSVHKKGAGEFTLPGLLKITAQVVPAKK 112

Query: 61  SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92
            R G++  T +E     +     V  +A   LK  
Sbjct: 113 KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 147


>gi|160889490|ref|ZP_02070493.1| hypothetical protein BACUNI_01914 [Bacteroides uniformis ATCC
          8492]
 gi|270296627|ref|ZP_06202826.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317479988|ref|ZP_07939103.1| hypothetical protein HMPREF1007_02220 [Bacteroides sp. 4_1_36]
 gi|156861007|gb|EDO54438.1| hypothetical protein BACUNI_01914 [Bacteroides uniformis ATCC
          8492]
 gi|270272614|gb|EFA18477.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316903933|gb|EFV25772.1| hypothetical protein HMPREF1007_02220 [Bacteroides sp. 4_1_36]
          Length = 167

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 19/51 (37%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          + + +     LS  D    +     ++ +  + G+ + I+    F +  K 
Sbjct: 39 IAQKMQDRSSLSIGDIKSTMQNFVEKLKEQLLEGKTVNIAGLGVFILAAKS 89


>gi|56697454|ref|YP_167822.1| DNA-binding protein HU, putative [Ruegeria pomeroyi DSS-3]
 gi|56679191|gb|AAV95857.1| DNA-binding protein HU, putative [Ruegeria pomeroyi DSS-3]
          Length = 91

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 5/60 (8%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
          + + +L+  +     + +K     V  +   + ++  +   + +       V  + +  G
Sbjct: 1  MRKRELIDLVVARSDVKKKFVKPAVEAMLAILGEAISQERDLNLQPLGKLKVN-RSADKG 59


>gi|229496075|ref|ZP_04389797.1| putative DNA-binding protein [Porphyromonas endodontalis ATCC
          35406]
 gi|229316971|gb|EEN82882.1| putative DNA-binding protein [Porphyromonas endodontalis ATCC
          35406]
          Length = 170

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 6/46 (13%), Positives = 16/46 (34%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          + +  ++ E  +S  D           + +    G+++      TF
Sbjct: 36 EFIDKVADETTISSADVKAVFDRAGKVLVEQLREGKSVDCGDLGTF 81


>gi|54295460|ref|YP_127875.1| hypothetical protein lpl2546 [Legionella pneumophila str. Lens]
 gi|53755292|emb|CAH16786.1| hypothetical protein lpl2546 [Legionella pneumophila str. Lens]
          Length = 510

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 14/53 (26%)

Query: 36  ICDSA-----VRGEAIKISSFA---TFHVKQKGSRVGRNLQTNQEVKIDPRRV 80
           +  +       +G  + I  F    T  +KQK      N  T +E+ I  +  
Sbjct: 399 MVSALGCQGFSKGSLLTIVGFGHPYTLVIKQK------NPATGKEISITTKNT 445


>gi|332297494|ref|YP_004439416.1| hypothetical protein Trebr_0849 [Treponema brennaborense DSM 12168]
 gi|332180597|gb|AEE16285.1| hypothetical protein Trebr_0849 [Treponema brennaborense DSM 12168]
          Length = 126

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 19/96 (19%)

Query: 5   ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV------KQ 58
           IT+S  ++ IS   G    D    +  L +    +  RGE +++    +  +      K+
Sbjct: 37  ITKS--IEKISTVSG---ADIRAVLYALVDVSVQALERGEIVRLGDLGSMRLTLSSEGKE 91

Query: 59  KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94
           K + V     T   +K   +R ++F     LK+ + 
Sbjct: 92  KEADV-----TAASIK---KRGIIFSPGKKLKEMLE 119


>gi|330884750|gb|EGH18899.1| HU family DNA-binding protein [Pseudomonas syringae pv. glycinea
          str. race 4]
          Length = 47

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 5/47 (10%), Positives = 15/47 (31%)

Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          +++     +  +   +  L   + D    G  I +       V ++ 
Sbjct: 1  MAEAIDAPKTTARNALEQLGQIVADQLENGVEITLPGIGKLKVAERP 47


>gi|256841010|ref|ZP_05546517.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256736853|gb|EEU50180.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 198

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 10/90 (11%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           DL K I     ++  D    + +L     +    G+ + I       V  +         
Sbjct: 36  DLAKRIHGRCTVTPADVAAVLISLSEVTAEYLREGKRVHIDGLGYLQVTLQC------PA 89

Query: 69  TNQEVKIDPR----RVVVFKASSILKKRIM 94
                +I       + V F+    LK  + 
Sbjct: 90  VQSTHEIRAESIRFKSVAFRPEVELKDSLK 119


>gi|150008989|ref|YP_001303732.1| hypothetical protein BDI_2385 [Parabacteroides distasonis ATCC
           8503]
 gi|255014820|ref|ZP_05286946.1| hypothetical protein B2_12994 [Bacteroides sp. 2_1_7]
 gi|298375778|ref|ZP_06985734.1| DNA-binding protein [Bacteroides sp. 3_1_19]
 gi|149937413|gb|ABR44110.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
 gi|298266815|gb|EFI08472.1| DNA-binding protein [Bacteroides sp. 3_1_19]
          Length = 198

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 10/90 (11%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           DL K I     ++  D    + +L     +    G+ + I       V  +         
Sbjct: 36  DLAKRIHGRCTVTPADVAAVLISLSEVTAEYLREGKRVHIDGLGYLQVTLQC------PA 89

Query: 69  TNQEVKIDPR----RVVVFKASSILKKRIM 94
                +I       + V F+    LK  + 
Sbjct: 90  VQSTHEIRAESIRFKSVAFRPEVELKDSLK 119


>gi|110596938|ref|ZP_01385228.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM
          13031]
 gi|110341625|gb|EAT60085.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM
          13031]
          Length = 335

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 4/54 (7%), Positives = 21/54 (38%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58
          +T  D ++ ++    +  +++   + +    +    +    + +     F V++
Sbjct: 1  MTNHDFIEELAGLLAMESQEAHALLNSFSGAMVAEFLACGKLTVKGLGRFAVRK 54


>gi|257468699|ref|ZP_05632793.1| hypothetical protein FulcA4_05115 [Fusobacterium ulcerans ATCC
          49185]
 gi|317062954|ref|ZP_07927439.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688630|gb|EFS25465.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 96

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 31/83 (37%), Gaps = 1/83 (1%)

Query: 5  ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T  + +K   K   + S +     +   +N +  +    + + +  +  F  ++  SR 
Sbjct: 1  MTEGEFIKFYKKRNKIKSHRLVKEKIDLFWNALFKALDEDKKVVLQRWGVFEKREMKSRK 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKAS 86
           +     +     P+  + F+A 
Sbjct: 61 IKVPMWEEPTYTKPKESIKFRAG 83


>gi|262383879|ref|ZP_06077015.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294777|gb|EEY82709.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 198

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 10/90 (11%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           DL K I     ++  D    + +L     +    G+ + I       V  +         
Sbjct: 36  DLAKRIHGRCTVTPADVAAVLISLSEVTAEYLREGKRVHIDGLGYLQVTLQC------PA 89

Query: 69  TNQEVKIDPR----RVVVFKASSILKKRIM 94
                +I       + V F+    LK  + 
Sbjct: 90  VQSTHEIRAESIRFKSVAFRPEVELKDSLK 119


>gi|237714768|ref|ZP_04545249.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|255691381|ref|ZP_05415056.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565]
 gi|262406956|ref|ZP_06083505.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644144|ref|ZP_06721919.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294805709|ref|ZP_06764588.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|298479780|ref|ZP_06997980.1| DNA-binding protein [Bacteroides sp. D22]
 gi|229445093|gb|EEO50884.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|260623025|gb|EEX45896.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565]
 gi|262355659|gb|EEZ04750.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640509|gb|EFF58752.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294447032|gb|EFG15620.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|298274170|gb|EFI15731.1| DNA-binding protein [Bacteroides sp. D22]
          Length = 159

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 12/105 (11%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           DL + I+K   +        +  L + +  +  +G ++++  F  F       R G N +
Sbjct: 36  DLCEEITKVGMVPSGAVKFVLDALIDTLNLNLRKGISVQLGDFGCF-------RPGMNCE 88

Query: 69  ---TNQEVKIDPRRVVV--FKASSILKKRIMDDMRGRKCNKDDVT 108
              T +EV  D  R V   F      K+ +      +    DD +
Sbjct: 89  SQDTEKEVDSDTIRRVKIIFTPGYKFKEMLSKVSVQKAVASDDGS 133


>gi|241949125|ref|XP_002417285.1| conserved hypothetical protein [Candida dubliniensis CD36]
 gi|223640623|emb|CAX44910.1| conserved hypothetical protein [Candida dubliniensis CD36]
          Length = 770

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 53  TFHVKQKGS--RVGRNLQTNQEVKIDPRR--VV---VFKASSILKKRIMDDMRGRK 101
           +F +K+  +    GRN QT Q       R  V     F   S  K++IM+D   RK
Sbjct: 311 SFKIKETSAAYESGRNPQTRQTYICPAARDWVPNLKHFLIRSEFKEKIMNDESFRK 366


>gi|326678942|ref|XP_003201209.1| PREDICTED: coiled-coil and C2 domain-containing protein 2A [Danio
           rerio]
          Length = 1544

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 55  HVKQKGSRVGRNLQTNQEVKIDPRRV 80
            V++K +R+ RN    + V I    V
Sbjct: 559 QVREKAARIRRNP--GEPVLIPELTV 582


>gi|237715423|ref|ZP_04545904.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405265|ref|ZP_06081815.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229444732|gb|EEO50523.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356140|gb|EEZ05230.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 166

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 17/46 (36%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          +  + + K  G  R      +T + + I      G+ + I    TF
Sbjct: 35 EFAEYMEKRSGFHRGQIDGILTEMVDAIRSLLSIGQPVTIEGLGTF 80


>gi|260641871|ref|ZP_05413827.2| putative DNA-binding protein [Bacteroides finegoldii DSM 17565]
 gi|260624439|gb|EEX47310.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565]
          Length = 214

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/116 (12%), Positives = 44/116 (37%), Gaps = 16/116 (13%)

Query: 7   RSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + + ++ +S+     +       V  + +E+ ++   G  I++     F +  K      
Sbjct: 43  KKEFLERVSRSSQTFNYNVIDAVVGVVIDELAEALSEGYTIELGELGYFSISLKC----- 97

Query: 66  NLQTNQEV---KIDPRRV----VVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY 114
              T++ +   +I    +    V  + S   K++I  ++   + +K   +S    +
Sbjct: 98  ---THKVMTKREIRAESICFDNVHLRTSKEFKRKIKREIELERVDKSKHSSQKVEF 150


>gi|160885407|ref|ZP_02066410.1| hypothetical protein BACOVA_03407 [Bacteroides ovatus ATCC 8483]
 gi|237719788|ref|ZP_04550269.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|299147276|ref|ZP_07040341.1| putative DNA-binding protein [Bacteroides sp. 3_1_23]
 gi|156109029|gb|EDO10774.1| hypothetical protein BACOVA_03407 [Bacteroides ovatus ATCC 8483]
 gi|229451057|gb|EEO56848.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298514554|gb|EFI38438.1| putative DNA-binding protein [Bacteroides sp. 3_1_23]
          Length = 168

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 17/46 (36%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          +  + + K  G  R      +T + + I      G+ + I    TF
Sbjct: 37 EFAEYMEKRSGFHRGQIDGILTEMVDAIRSLLSIGQPVTIEGLGTF 82


>gi|237716287|ref|ZP_04546768.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229443934|gb|EEO49725.1| conserved hypothetical protein [Bacteroides sp. D1]
          Length = 174

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 11 VKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          + S+++E      LS +D +  + +    +    V G  +K+     F
Sbjct: 32 IDSLAQEIESIGSLSVEDVSHVMKSFVRAMKKVLVAGNKVKVDGLGIF 79


>gi|254167229|ref|ZP_04874082.1| hypothetical protein ABOONEI_637 [Aciduliprofundum boonei T469]
 gi|197624085|gb|EDY36647.1| hypothetical protein ABOONEI_637 [Aciduliprofundum boonei T469]
          Length = 201

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEI 36
           R DL+K ++K  GL++KD+ + V  +   +
Sbjct: 164 RDDLIKFLTKRVGLNKKDAEQVVDEIMKSM 193


>gi|254167798|ref|ZP_04874648.1| hypothetical protein ABOONEI_1090 [Aciduliprofundum boonei T469]
 gi|197623326|gb|EDY35891.1| hypothetical protein ABOONEI_1090 [Aciduliprofundum boonei T469]
          Length = 201

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEI 36
           R DL+K ++K  GL++KD+ + V  +   +
Sbjct: 164 RDDLIKFLTKRVGLNKKDAEQVVDEIMKSM 193


>gi|257467763|ref|ZP_05631859.1| hypothetical protein FulcA4_00417 [Fusobacterium ulcerans ATCC
          49185]
 gi|317062054|ref|ZP_07926539.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313687730|gb|EFS24565.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 93

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSIL 89
          +FN I +     E +K  +   F + ++  R   +  + +  +I P++ + F  S IL
Sbjct: 33 IFNLIAEVIAMDEEVKFRNRGIFSLLKRKKRRIGSPTSKEVREIVPKKTIKFVQSKIL 90


>gi|255692613|ref|ZP_05416288.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565]
 gi|294644764|ref|ZP_06722509.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294810580|ref|ZP_06769232.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|298481640|ref|ZP_06999831.1| DNA-binding protein [Bacteroides sp. D22]
 gi|260621672|gb|EEX44543.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565]
 gi|292639886|gb|EFF58159.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294442241|gb|EFG11056.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|298272181|gb|EFI13751.1| DNA-binding protein [Bacteroides sp. D22]
          Length = 168

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 17/46 (36%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          +  + + K  G  R      +T + + I      G+ + I    TF
Sbjct: 37 EFAEYMEKRSGFHRGQIDGILTEMVDAIRSLLSIGQPVTIEGLGTF 82


>gi|149376709|ref|ZP_01894467.1| hypothetical protein MDG893_00090 [Marinobacter algicola DG893]
 gi|149358948|gb|EDM47414.1| hypothetical protein MDG893_00090 [Marinobacter algicola DG893]
          Length = 55

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 5/24 (20%), Positives = 16/24 (66%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTR 27
          ++ +S+L+ +I++   +S+  + R
Sbjct: 32 SVNKSELIDAIAESADISKAAAGR 55


>gi|303237952|ref|ZP_07324503.1| putative DNA-binding protein [Prevotella disiens FB035-09AN]
 gi|302481870|gb|EFL44914.1| putative DNA-binding protein [Prevotella disiens FB035-09AN]
          Length = 156

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 19/49 (38%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
           DL   I+    ++  D    ++ L  E+      G  + +  F +F +
Sbjct: 34 KDLATRINDLCTVTEPDILAVISALVKEMNYQLKNGMRVHLDGFGSFKL 82


>gi|258647749|ref|ZP_05735218.1| putative non-specific DNA binding protein [Prevotella tannerae
          ATCC 51259]
 gi|260852597|gb|EEX72466.1| putative non-specific DNA binding protein [Prevotella tannerae
          ATCC 51259]
          Length = 136

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 19/45 (42%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          +V  I K  G+S       +  L  E+  +   G ++++    +F
Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEVLQTLSDGNSVRLGDLGSF 79


>gi|329962082|ref|ZP_08300093.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
 gi|328530730|gb|EGF57588.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
          Length = 203

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 25/102 (24%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF--------- 54
           +IT  +L + I +   L+  D    +  L + + D+   G  + +     F         
Sbjct: 32  SITTDELRRHIQEYCSLTETDVLAVLDALSHFVGDALSEGRRVHLDGIGYFTPTLTCTEP 91

Query: 55  ---HVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
                K+K         T  ++     + + F+    L+  I
Sbjct: 92  VTLETKRKS--------TKVKL-----KSISFRPDKALRSEI 120


>gi|89068934|ref|ZP_01156316.1| DNA-binding protein HU, putative [Oceanicola granulosus HTCC2516]
 gi|89045515|gb|EAR51579.1| DNA-binding protein HU, putative [Oceanicola granulosus HTCC2516]
          Length = 136

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 7/55 (12%), Positives = 22/55 (40%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + D V+ +    GL ++D+          + ++   GE + +       + ++ +
Sbjct: 50  KKDFVERVVTRSGLKKRDAKLAAEAALAVLGEAIANGEELNLPPLGKLKINRRKA 104


>gi|301312038|ref|ZP_07217960.1| putative DNA-binding protein [Bacteroides sp. 20_3]
 gi|300830140|gb|EFK60788.1| putative DNA-binding protein [Bacteroides sp. 20_3]
          Length = 198

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 10/90 (11%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           DL K I     ++  D    + +L     +    G+ + I       V  +         
Sbjct: 36  DLAKRIHGRCTVTPADVAAVLISLSEVTAEYLREGKRVHIDGLGYLQVTLQC------PA 89

Query: 69  TNQEVKIDPR----RVVVFKASSILKKRIM 94
                +I       + V F+    LK  + 
Sbjct: 90  VQSTHEIRAESIRFKSVAFRPEVELKDSLK 119


>gi|260590683|ref|ZP_05856141.1| putative DNA-binding protein [Prevotella veroralis F0319]
 gi|260537344|gb|EEX19961.1| putative DNA-binding protein [Prevotella veroralis F0319]
          Length = 170

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 21/49 (42%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
           +L   I+    ++  D    +T L  E+  +   G+ +K+ S   F V
Sbjct: 34 KELATRINNTCTVTESDVLAVITALVVEMNYALREGKRVKLDSLGIFRV 82


>gi|303241934|ref|ZP_07328427.1| histone family protein DNA-binding protein [Acetivibrio
          cellulolyticus CD2]
 gi|302590489|gb|EFL60244.1| histone family protein DNA-binding protein [Acetivibrio
          cellulolyticus CD2]
          Length = 53

 Score = 34.5 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEI 36
          + + ++V +I  + GLS +D  + + T   EI
Sbjct: 1  MKKIEIVGNICSKTGLSAQDVMKVLDTFIEEI 32


>gi|289597161|ref|YP_003483857.1| histone family protein DNA-binding protein [Aciduliprofundum boonei
           T469]
 gi|289534948|gb|ADD09295.1| histone family protein DNA-binding protein [Aciduliprofundum boonei
           T469]
          Length = 199

 Score = 34.5 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEI 36
           R DL+K ++K  GL++KD+ + V  +   +
Sbjct: 162 RDDLIKFLTKRVGLNKKDAEQVVDEIMKSM 191


>gi|295084798|emb|CBK66321.1| DNA-binding protein, histone-like, putative [Bacteroides
           xylanisolvens XB1A]
          Length = 159

 Score = 34.5 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 12/105 (11%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           DL + I+K   +        +  L + +  +  +G ++++  F  F       R G N +
Sbjct: 36  DLCEEITKVGMVPSGAVKFVLDALIDTLNLNLRKGISVQLGDFGCF-------RPGMNCE 88

Query: 69  ---TNQEVKIDPRRVVV--FKASSILKKRIMDDMRGRKCNKDDVT 108
              T +EV  D  R V   F      K+ +      +    DD +
Sbjct: 89  SQDTEKEVDSDTIRRVKIIFTPGYKFKEMLSKVSVQKAVASDDGS 133


>gi|282879746|ref|ZP_06288476.1| putative DNA-binding protein [Prevotella timonensis CRIS 5C-B1]
 gi|281306415|gb|EFA98445.1| putative DNA-binding protein [Prevotella timonensis CRIS 5C-B1]
          Length = 135

 Score = 34.5 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 19/48 (39%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          +L   I       R +    +T L +E+      G+ + +  F  FH+
Sbjct: 28 ELATIIESNTTFKRGEVQGLITELVDELKHQLSDGKTVVLDGFGRFHL 75


>gi|256841942|ref|ZP_05547447.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256736258|gb|EEU49587.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 145

 Score = 34.5 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/91 (12%), Positives = 25/91 (27%), Gaps = 22/91 (24%)

Query: 12  KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV----------KQKGS 61
             I +   +S  D    + +L   +      G+ +++  F  F +          K   +
Sbjct: 41  SMIGERSCVSSADVKAVLDSLIYVMKLEMSDGKIVQLGEFGNFRITFGSEGTKVEKDFNA 100

Query: 62  RVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92
              R  +              F     L+ +
Sbjct: 101 TKIRRPK------------YTFSPGKALRSQ 119


>gi|189465961|ref|ZP_03014746.1| hypothetical protein BACINT_02324 [Bacteroides intestinalis DSM
          17393]
 gi|189434225|gb|EDV03210.1| hypothetical protein BACINT_02324 [Bacteroides intestinalis DSM
          17393]
          Length = 180

 Score = 34.5 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 16/45 (35%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          L K +S +   SR D T  +      + D    GE +       F
Sbjct: 37 LAKRVSSQTTASRADVTAVIIATVENMIDGLRAGEQVDFGDLGKF 81


>gi|299145384|ref|ZP_07038452.1| putative non-specific DNA binding protein [Bacteroides sp.
          3_1_23]
 gi|298515875|gb|EFI39756.1| putative non-specific DNA binding protein [Bacteroides sp.
          3_1_23]
          Length = 180

 Score = 34.5 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 11 VKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          + S+++E      LS +D +  + +    +    V G  +K+     F
Sbjct: 38 IDSLAQEIESIGSLSVEDVSHVMKSFVRAMKKVLVAGNKVKVDGLGIF 85


>gi|260170541|ref|ZP_05756953.1| hypothetical protein BacD2_01623 [Bacteroides sp. D2]
 gi|293373004|ref|ZP_06619373.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|315918887|ref|ZP_07915127.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|292632072|gb|EFF50681.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|313692762|gb|EFS29597.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 180

 Score = 34.5 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 11 VKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          + S+++E      LS +D +  + +    +    V G  +K+     F
Sbjct: 38 IDSLAQEIESIGSLSVEDVSHVMKSFVRAMKKVLVAGNKVKVDGLGIF 85


>gi|255540627|ref|XP_002511378.1| anthranilate phosphoribosyltransferase, putative [Ricinus communis]
 gi|223550493|gb|EEF51980.1| anthranilate phosphoribosyltransferase, putative [Ricinus communis]
          Length = 425

 Score = 34.5 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 7/48 (14%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFA-TFH 55
           +L++S+     LS  ++   +  L +++ ++ +    + + +   TF 
Sbjct: 88  ELIESLINRVDLSESEAEASLDYLLDDVNEALISAFLVLLRAKGETFE 135


>gi|160886002|ref|ZP_02067005.1| hypothetical protein BACOVA_04008 [Bacteroides ovatus ATCC 8483]
 gi|262407891|ref|ZP_06084439.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646759|ref|ZP_06724382.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294807710|ref|ZP_06766503.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|156108815|gb|EDO10560.1| hypothetical protein BACOVA_04008 [Bacteroides ovatus ATCC 8483]
 gi|262354699|gb|EEZ03791.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637919|gb|EFF56314.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294445146|gb|EFG13820.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|295084419|emb|CBK65942.1| Bacterial DNA-binding protein. [Bacteroides xylanisolvens XB1A]
          Length = 180

 Score = 34.5 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 11 VKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          + S+++E      LS +D +  + +    +    V G  +K+     F
Sbjct: 38 IDSLAQEIESIGSLSVEDVSHVMKSFVRAMKKVLVAGNKVKVDGLGIF 85


>gi|327400480|ref|YP_004341319.1| Nucleoside-triphosphatase [Archaeoglobus veneficus SNP6]
 gi|327315988|gb|AEA46604.1| Nucleoside-triphosphatase [Archaeoglobus veneficus SNP6]
          Length = 172

 Score = 34.5 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 3/32 (9%)

Query: 44 EAIKISSFATFHVKQKGSRVG---RNLQTNQE 72
          + + I+ F T  V+++G RVG   R+L+T +E
Sbjct: 27 DTLDITGFITVEVRERGKRVGFRLRDLRTGEE 58


>gi|37542919|gb|AAL61530.1| major basic nuclear protein [Pfiesteria piscicida]
          Length = 114

 Score = 34.5 bits (79), Expect = 5.7,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 26/60 (43%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +++T+  L +++S    + + D ++ +T L   +     +   + +   A    + K +
Sbjct: 19 GQSLTKGGLAEALSAATEVKKSDCSKVLTALAEVVAKEVKKTGKVIVPGIARIVTRTKKA 78


>gi|124009779|ref|ZP_01694448.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
 gi|123984187|gb|EAY24543.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
          Length = 231

 Score = 34.1 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 3  KTITRSDLVK-SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAI 46
          +T+T  ++++  I +   +++ ++   +   F+ I ++   G+AI
Sbjct: 27 QTLTLDNIIETMIGRGSTITKAEALSVLEEFFDAITEAIKNGQAI 71


>gi|325299764|ref|YP_004259681.1| DNA-binding protein [Bacteroides salanitronis DSM 18170]
 gi|324319317|gb|ADY37208.1| DNA-binding protein [Bacteroides salanitronis DSM 18170]
          Length = 162

 Score = 34.1 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 1  MSKTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          MS+++T    VK I+   G  SR      V  +   + +  + G  +++ +   F
Sbjct: 27 MSESMTFDKFVKHIADHNGVYSRGTVQGVVLDMCECLVEMLLNGNKVQLGALGDF 81


>gi|160884011|ref|ZP_02065014.1| hypothetical protein BACOVA_01985 [Bacteroides ovatus ATCC 8483]
 gi|299147013|ref|ZP_07040080.1| putative DNA-binding protein [Bacteroides sp. 3_1_23]
 gi|156110741|gb|EDO12486.1| hypothetical protein BACOVA_01985 [Bacteroides ovatus ATCC 8483]
 gi|295086142|emb|CBK67665.1| DNA-binding protein, histone-like, putative [Bacteroides
           xylanisolvens XB1A]
 gi|298514898|gb|EFI38780.1| putative DNA-binding protein [Bacteroides sp. 3_1_23]
          Length = 158

 Score = 34.1 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 12/99 (12%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           + T+   DL K +S    +        +  L + +  +  +G ++++  F  F       
Sbjct: 29  TNTVNFRDLCKEVSMFGMIPEGAVKHVIDALIDALNTNLNKGLSVQLGDFGCF------- 81

Query: 62  RVGRNLQT-NQEVKIDP---RRV-VVFKASSILKKRIMD 95
           R G + ++  +E  +D    RRV +VF      K  + +
Sbjct: 82  RPGMSCKSQKEEKDVDADTVRRVKIVFTPGYKFKDMLDN 120


>gi|160884702|ref|ZP_02065705.1| hypothetical protein BACOVA_02691 [Bacteroides ovatus ATCC 8483]
 gi|156109737|gb|EDO11482.1| hypothetical protein BACOVA_02691 [Bacteroides ovatus ATCC 8483]
          Length = 165

 Score = 34.1 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 14/89 (15%)

Query: 13  SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH--VKQKGSRVGRNLQTN 70
            +S+  G+ RK     V+ L +++ +    G+++++  F  F   ++ K +        +
Sbjct: 40  KVSQLCGVHRKVVDLVVSGLVDKMAEDIDDGKSVQLGEFGIFSPTIRAKSA--------D 91

Query: 71  QEVKIDPRRVVV----FKASSILKKRIMD 95
            E  +  + +V     F    I K  + D
Sbjct: 92  DEKDVSSKSIVQRKIIFYPGKIFKDTLED 120


>gi|253568568|ref|ZP_04845979.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298385328|ref|ZP_06994886.1| DNA-binding protein [Bacteroides sp. 1_1_14]
 gi|251842641|gb|EES70721.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298261469|gb|EFI04335.1| DNA-binding protein [Bacteroides sp. 1_1_14]
          Length = 173

 Score = 34.1 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 6/54 (11%), Positives = 21/54 (38%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          + +++    + + +     LS  D    +     ++ +  + G+++ I     F
Sbjct: 30 LGQSVNLKYIAQKMQGYSSLSIGDIKSVIQNFVEKMKEQLLEGKSVNIEGLGVF 83


>gi|29346025|ref|NP_809528.1| hypothetical protein BT_0615 [Bacteroides thetaiotaomicron
          VPI-5482]
 gi|29337919|gb|AAO75722.1| putative non-specific DNA binding protein [Bacteroides
          thetaiotaomicron VPI-5482]
          Length = 172

 Score = 34.1 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 6/54 (11%), Positives = 21/54 (38%)

Query: 1  MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          + +++    + + +     LS  D    +     ++ +  + G+++ I     F
Sbjct: 30 LGQSVNLKYIAQKMQGYSSLSIGDIKSVIQNFVEKMKEQLLEGKSVNIEGLGVF 83


>gi|150007648|ref|YP_001302391.1| hypothetical protein BDI_1003 [Parabacteroides distasonis ATCC
           8503]
 gi|255013826|ref|ZP_05285952.1| hypothetical protein B2_07957 [Bacteroides sp. 2_1_7]
 gi|256839835|ref|ZP_05545344.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298375593|ref|ZP_06985550.1| DNA-binding protein [Bacteroides sp. 3_1_19]
 gi|149936072|gb|ABR42769.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
 gi|256738765|gb|EEU52090.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298268093|gb|EFI09749.1| DNA-binding protein [Bacteroides sp. 3_1_19]
          Length = 161

 Score = 34.1 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 15/81 (18%)

Query: 24  DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV-------KID 76
           +    +  L   +     +G  +KI    TF +  K   V       +++        I 
Sbjct: 50  EMEASLELLAKFVPQQLQQGHTVKIPGLGTFRLTFKSDGV-------EDINSFRANSMIK 102

Query: 77  PRRVVVFKASSILKKRIMDDM 97
             R+V F  S  L++ ++  +
Sbjct: 103 NVRIV-FTPSKELRESVLSGL 122


>gi|224539810|ref|ZP_03680349.1| hypothetical protein BACCELL_04720 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518556|gb|EEF87661.1| hypothetical protein BACCELL_04720 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 165

 Score = 34.1 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 14/100 (14%)

Query: 12  KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF--HVKQKGSRVGRNLQT 69
             +S+  G+ RK     V+ L + + +    G+++++  F  F   +K K +       T
Sbjct: 39  AKVSRLCGIHRKVVDLVVSGLVDMMAEDIDDGKSVQLGEFGIFRPTIKAKSA------DT 92

Query: 70  NQEVKIDPRRVV----VFKASSILKKRIMDDMRGRKCNKD 105
            + V      +V    VF    I ++ + +    R    D
Sbjct: 93  AEGVT--ASNIVRKRIVFTPGKIFQRTLGEMSVTRSIPVD 130


>gi|206562867|ref|YP_002233630.1| putative histone-like protein [Burkholderia cenocepacia J2315]
 gi|198038907|emb|CAR54869.1| putative histone-like protein [Burkholderia cenocepacia J2315]
          Length = 149

 Score = 34.1 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFH---VKQKG 60
           T++ L   I++   +  K     +  L N +  S   +G     +          V  K 
Sbjct: 53  TKASLATHIAERAAVEVKAVKAVLAALENVVLGSVHKKGAGEFTLPGLLKITAQVVPAKK 112

Query: 61  SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92
            R G++  T +E     +     V  +A   LK  
Sbjct: 113 KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 147


>gi|325528108|gb|EGD05311.1| DNA-binding protein BpH2 [Burkholderia sp. TJI49]
          Length = 118

 Score = 34.1 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFH---VKQKG 60
           T++ L   I++   +  K     +  L N +  S   +G     +          V  K 
Sbjct: 22  TKASLATHIAERAAVEVKAVKAVLAALENVVLGSVHKKGAGEFTLPGLLKITAQVVPAKK 81

Query: 61  SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92
            R G++  T +E     +     V  +A   LK  
Sbjct: 82  KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 116


>gi|325297692|ref|YP_004257609.1| hypothetical protein Bacsa_0540 [Bacteroides salanitronis DSM
          18170]
 gi|324317245|gb|ADY35136.1| hypothetical protein Bacsa_0540 [Bacteroides salanitronis DSM
          18170]
          Length = 162

 Score = 34.1 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 1  MSKTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          MS+++T    VK I+   G  SR      V  +   + +  + G  +++ +   F
Sbjct: 27 MSESMTFDKFVKHIADHNGVYSRGTVQGVVLDMCECLVEMLLNGNKVQLGALGDF 81


>gi|259419130|ref|ZP_05743047.1| putative DNA-binding protein HU [Silicibacter sp. TrichCH4B]
 gi|259345352|gb|EEW57206.1| putative DNA-binding protein HU [Silicibacter sp. TrichCH4B]
          Length = 102

 Score = 34.1 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 5/34 (14%), Positives = 15/34 (44%)

Query: 7  RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA 40
          + +L+  +    G+ ++D    V  +   + +S 
Sbjct: 11 KKELIDQVVARSGVKKRDVKPVVEAMLAVLGESI 44


>gi|189467576|ref|ZP_03016361.1| hypothetical protein BACINT_03966 [Bacteroides intestinalis DSM
           17393]
 gi|189435840|gb|EDV04825.1| hypothetical protein BACINT_03966 [Bacteroides intestinalis DSM
           17393]
          Length = 344

 Score = 34.1 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 23/39 (58%)

Query: 1   MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDS 39
           +S+ I R+DL K+I+    +S+ ++ + V    N I ++
Sbjct: 231 LSQNIDRNDLAKAIANNTNMSKAEADKTVEQYMNLIDNA 269


>gi|290991622|ref|XP_002678434.1| predicted protein [Naegleria gruberi]
 gi|284092046|gb|EFC45690.1| predicted protein [Naegleria gruberi]
          Length = 547

 Score = 34.1 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 16/82 (19%)

Query: 35  EICDSAVRGEAIKISSFATFHVKQKGSRVGRNL------QTNQEVKIDPRRVVVFKASSI 88
           E+     +G  I + SF +  V +  + +GRN       ++     I+  R   FK    
Sbjct: 361 EVFQELAKG-KIVVPSFGSESVVKGAAYLGRNPDKIACRRSKHAYGIESER--AFKFGK- 416

Query: 89  LKKRIMDDMRGRKCNKDDVTSP 110
                 DD +  K  + D   P
Sbjct: 417 ------DDEKRLKRIEGDSAEP 432


>gi|299144950|ref|ZP_07038018.1| putative DNA-binding protein [Bacteroides sp. 3_1_23]
 gi|298515441|gb|EFI39322.1| putative DNA-binding protein [Bacteroides sp. 3_1_23]
          Length = 165

 Score = 34.1 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 14/89 (15%)

Query: 13  SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH--VKQKGSRVGRNLQTN 70
            +S+  G+ RK     V+ L +++ +    G+++++  F  F   ++ K +        +
Sbjct: 40  KVSQLCGVHRKVVDLVVSGLVDKMAEDIDDGKSVQLGEFGIFSPTIRAKSA--------D 91

Query: 71  QEVKIDPRRVVV----FKASSILKKRIMD 95
            E  +  + +V     F    I K  + D
Sbjct: 92  DEKDVSSKSIVQRKIIFYPGKIFKDTLED 120


>gi|289168088|ref|YP_003446357.1| type III restriction endonuclease [Streptococcus mitis B6]
 gi|288907655|emb|CBJ22492.1| type III restriction endonuclease [Streptococcus mitis B6]
          Length = 1025

 Score = 34.1 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 2   SKTITRSDLVKSISKEFGLSRKDSTRFV 29
           S+ +T+ DL+  I+ + GL+RK     +
Sbjct: 807 SQIMTKYDLLGEIADQTGLTRKLVAEIL 834


>gi|255965509|gb|ACU45059.1| major basic nuclear protein [Pfiesteria piscicida]
          Length = 102

 Score = 34.1 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 26/60 (43%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
           +++T+  L +++S    + + D ++ +T L   +     +   + +   A    + K +
Sbjct: 7  GQSLTKGGLAEALSAATEVKKSDCSKVLTALAEVVAKEVKKTGKVIVPGIARIVTRTKKA 66


>gi|270295721|ref|ZP_06201921.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273125|gb|EFA18987.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 208

 Score = 34.1 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
           +T TR +L + I+   G S+  +   +  L   +      G ++KI     F
Sbjct: 23 GQTGTR-ELAEYIAMTSGFSKGVTEGVICELGEALAHEMGMGRSVKIEGLGVF 74


>gi|312874680|ref|ZP_07734702.1| hypothetical protein HMPREF9216_0017 [Lactobacillus iners LEAF
          2053A-b]
 gi|311089783|gb|EFQ48205.1| hypothetical protein HMPREF9216_0017 [Lactobacillus iners LEAF
          2053A-b]
          Length = 107

 Score = 34.1 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 38/88 (43%), Gaps = 8/88 (9%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK--QKGSRVGR 65
          SDL++  +    +S+  + + +      + +  +  +   I     F+    ++ +    
Sbjct: 17 SDLIRETAINLAISQVTAEKVIKEYIKVLKNHILVDDRTTIIGLGVFYQAFDRRKA---- 72

Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93
          NL++  +    P + + FK S +L K+I
Sbjct: 73 NLKSAAKTL--PYKSMRFKPSRMLNKQI 98


>gi|13474324|ref|NP_105892.1| hypothetical protein mll5186 [Mesorhizobium loti MAFF303099]
 gi|14025076|dbj|BAB51678.1| mll5186 [Mesorhizobium loti MAFF303099]
          Length = 305

 Score = 34.1 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 17/33 (51%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDS 39
           ++ L + ++   GLS  D+   V  +  ++ D+
Sbjct: 218 KTYLAQLVAARTGLSEADAKARVDAMVAKVEDA 250


>gi|37521991|ref|NP_925368.1| hypothetical protein gll2422 [Gloeobacter violaceus PCC 7421]
 gi|35212990|dbj|BAC90363.1| gll2422 [Gloeobacter violaceus PCC 7421]
          Length = 155

 Score = 34.1 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 5/42 (11%), Positives = 18/42 (42%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS 50
           +  + I+++ G+   ++ R    +   + ++   GE   +  
Sbjct: 99  EFYERIAQKAGIDVAEAERRARAVVEVLTEAVSEGEMRDVRG 140


>gi|260593245|ref|ZP_05858703.1| putative non-specific DNA binding protein [Prevotella veroralis
          F0319]
 gi|260534802|gb|EEX17419.1| putative non-specific DNA binding protein [Prevotella veroralis
          F0319]
          Length = 161

 Score = 34.1 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 11 VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
           K I+ E  +S  D    +T L   + D   +G ++K+    +F
Sbjct: 32 AKRIAAESTVSPADVRTVLTALGGVMGDYMSQGRSVKLDGVGSF 75


>gi|134037074|gb|ABO47877.1| histone-like protein [Alexandrium fundyense]
          Length = 107

 Score = 34.1 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 6/60 (10%), Positives = 22/60 (36%)

Query: 2  SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          S  +T+  L  +++    + +KD  + + ++         +     +        ++K +
Sbjct: 12 STAMTKGALADAVATACEMKKKDVIKALASIAEIATAEVKKSGVFTLPGLFRIKSRKKPA 71


>gi|257469219|ref|ZP_05633313.1| hypothetical protein FulcA4_07747 [Fusobacterium ulcerans ATCC
           49185]
          Length = 121

 Score = 34.1 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 9/82 (10%), Positives = 26/82 (31%)

Query: 24  DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVF 83
           ++   +   +  I         + +  F TF  K+   R   ++  N       R  + F
Sbjct: 36  EAKEKLELFWEVIFAGIATERKVIVKDFGTFEAKKLKPRKIYDIHKNSLYMTKERTALKF 95

Query: 84  KASSILKKRIMDDMRGRKCNKD 105
           +  +   + +   +     + +
Sbjct: 96  RVKNGFMEIVNKKVNNYGLSDE 117


>gi|167764215|ref|ZP_02436342.1| hypothetical protein BACSTE_02600 [Bacteroides stercoris ATCC
          43183]
 gi|167698331|gb|EDS14910.1| hypothetical protein BACSTE_02600 [Bacteroides stercoris ATCC
          43183]
          Length = 156

 Score = 34.1 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          +T+  L + +SK     +      ++ L + I D    G+++ I +  TF  
Sbjct: 37 LTK--LAELLSKRSHFPQGMIMGILSELGDTIEDILSMGQSVTIPNLGTFQT 86


>gi|150005477|ref|YP_001300221.1| hypothetical protein BVU_2960 [Bacteroides vulgatus ATCC 8482]
 gi|149933901|gb|ABR40599.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
          Length = 164

 Score = 34.1 bits (78), Expect = 7.2,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 2  SKTITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          S+ +T     + IS      +R D    +    + + +  + G+ I++    TF + 
Sbjct: 28 SEIMTLDKFAEHISTHGSKYNRADIQAVLIQAVDCMREQLLAGQRIQMGDLGTFSIH 84


>gi|265750354|ref|ZP_06086417.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263237250|gb|EEZ22700.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 164

 Score = 34.1 bits (78), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 2  SKTITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          S+ +T     + IS      +R D    +    + + +  + G+ I++    TF + 
Sbjct: 28 SEIMTLDKFAEHISTHGSKYNRADIQAVLIQAVDCMREQLLAGQRIQMGDLGTFSIH 84


>gi|212694979|ref|ZP_03303107.1| hypothetical protein BACDOR_04516 [Bacteroides dorei DSM 17855]
 gi|237710684|ref|ZP_04541165.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237727072|ref|ZP_04557553.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|294778678|ref|ZP_06744097.1| putative DNA-binding protein [Bacteroides vulgatus PC510]
 gi|319640700|ref|ZP_07995414.1| hypothetical protein HMPREF9011_01011 [Bacteroides sp. 3_1_40A]
 gi|212662539|gb|EEB23113.1| hypothetical protein BACDOR_04516 [Bacteroides dorei DSM 17855]
 gi|229433928|gb|EEO44005.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229455406|gb|EEO61127.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|294447334|gb|EFG15915.1| putative DNA-binding protein [Bacteroides vulgatus PC510]
 gi|317387662|gb|EFV68527.1| hypothetical protein HMPREF9011_01011 [Bacteroides sp. 3_1_40A]
          Length = 164

 Score = 34.1 bits (78), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 2  SKTITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          S+ +T     + IS      +R D    +    + + +  + G+ I++    TF + 
Sbjct: 28 SEIMTLDKFAEHISTHGSKYNRADIQAVLIQAVDCMREQLLAGQRIQMGDLGTFSIH 84


>gi|189459594|ref|ZP_03008379.1| hypothetical protein BACCOP_00220 [Bacteroides coprocola DSM 17136]
 gi|189433676|gb|EDV02661.1| hypothetical protein BACCOP_00220 [Bacteroides coprocola DSM 17136]
          Length = 125

 Score = 34.1 bits (78), Expect = 7.3,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 26/112 (23%)

Query: 9   DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68
           D+ + I +   ++R D+   +  L  E+C     GE +++    +  V  K         
Sbjct: 17  DMARRIQRRCTVTRADTLAVLVALEEEVCRGLCNGEIVRLGELGSLQVGVKS-------- 68

Query: 69  TNQEVKIDP--------RRVVVFKASSILK--------KRIMDDMRGRKCNK 104
             + V+++         +  V F+   +LK        +R+       +  K
Sbjct: 69  --EGVRLEADFHESMINKIWVRFRPGMVLKGMLDGAAFERVSPRKEAGRAGK 118


>gi|189466102|ref|ZP_03014887.1| hypothetical protein BACINT_02472 [Bacteroides intestinalis DSM
          17393]
 gi|189434366|gb|EDV03351.1| hypothetical protein BACINT_02472 [Bacteroides intestinalis DSM
          17393]
          Length = 169

 Score = 34.1 bits (78), Expect = 7.4,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 19/51 (37%)

Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60
          + + +     LS  D    +     ++ +  + G+ + I+    F +  K 
Sbjct: 39 IAQKMQDRSSLSIGDIRSTMQNFVEKLKEQLLEGKTVNIAGLGVFMLAAKS 89


>gi|299146634|ref|ZP_07039702.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
 gi|298517125|gb|EFI41006.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
          Length = 206

 Score = 33.7 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 14/116 (12%), Positives = 43/116 (37%), Gaps = 16/116 (13%)

Query: 7   RSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
           + + ++ +S      +       V  + +E+ ++   G  +++     F +  K      
Sbjct: 34  KKEFLERVSHSSQTFNYNVIDAVVGIVIDELAEALSEGYVVELGELGHFSISLKC----- 88

Query: 66  NLQTNQEV---KIDPRRV----VVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY 114
              T++ +   +I    +    V  + S   K++I  ++   + +K   +S    +
Sbjct: 89  ---THKVMTKREIRAESICFDNVHLRTSKEFKRKIKREIELERVDKSKHSSQKVEF 141


>gi|325297251|ref|YP_004257168.1| hypothetical protein Bacsa_0082 [Bacteroides salanitronis DSM
          18170]
 gi|324316804|gb|ADY34695.1| hypothetical protein Bacsa_0082 [Bacteroides salanitronis DSM
          18170]
          Length = 164

 Score = 33.7 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 1  MSKTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          ++KT+T  + VK I+   G  +R      V+     + +  + G  ++     TF
Sbjct: 27 VTKTMTFDEFVKHIADHNGVFTRGTVKGVVSDTCACLVEMLLNGCKVQFGELGTF 81


>gi|294674546|ref|YP_003575162.1| DNA-binding protein [Prevotella ruminicola 23]
 gi|294472116|gb|ADE81505.1| putative DNA-binding protein [Prevotella ruminicola 23]
          Length = 182

 Score = 33.7 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 15/113 (13%)

Query: 7   RSDLVKSISKE---------FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT--FH 55
           R DL  +I+++          G+S              I   A  G ++ +    T  F 
Sbjct: 26  RPDLYSAIAEKKVFTEAATHSGISAGVIKAAWEAAGAVIRTWATEGHSVPVPGLGTMRFG 85

Query: 56  VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT 108
           V+ K      +++T     I  RR+V F  S  +K  + +      C  +D T
Sbjct: 86  VRAKAVEKLDDVKTG---LITTRRIV-FTPSVDVKDELKNTSIQITCLDEDGT 134


>gi|167836517|ref|ZP_02463400.1| hypothetical protein Bpse38_08516 [Burkholderia thailandensis
          MSMB43]
          Length = 25

 Score = 33.7 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 6/25 (24%), Positives = 17/25 (68%)

Query: 5  ITRSDLVKSISKEFGLSRKDSTRFV 29
          + + +LV +++   G+S+ D+++ V
Sbjct: 1  MNKQELVDAVAAGAGVSKSDASKTV 25


>gi|298377720|ref|ZP_06987671.1| non-specific DNA binding protein [Bacteroides sp. 3_1_19]
 gi|298265423|gb|EFI07085.1| non-specific DNA binding protein [Bacteroides sp. 3_1_19]
          Length = 147

 Score = 33.7 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 5/46 (10%), Positives = 19/46 (41%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54
          ++ + +++E  +S  D    +  L   + +      ++ +    +F
Sbjct: 30 EVAERLARESTVSPADVHAVIRALPTVMAEIMAESRSVNLEGLGSF 75


>gi|37542956|gb|AAL61532.1| major basic nuclear protein [Pfiesteria piscicida]
          Length = 117

 Score = 33.7 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 38/94 (40%), Gaps = 4/94 (4%)

Query: 4   TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS-R 62
           ++T+  L +++S    + + D ++ +T L   +     +   + +   A    + K + +
Sbjct: 24  SLTKGGLAEALSAAADVKKSDCSKVLTALAEVVAKEVKKTGKVIVPGIARIVTRTKKATK 83

Query: 63  VGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93
            G+     +   I     R VV     + +K+ +
Sbjct: 84  AGKREMFGKIFVIKARPARTVVKAFPVAAIKQAV 117


>gi|329955617|ref|ZP_08296525.1| putative DNA-binding protein [Bacteroides clarus YIT 12056]
 gi|328526020|gb|EGF53044.1| putative DNA-binding protein [Bacteroides clarus YIT 12056]
          Length = 154

 Score = 33.7 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 14/110 (12%)

Query: 9   DLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67
           DL   +  + G+  R      +  L + +  +  +G ++++  F  F       R G N 
Sbjct: 36  DLCDEV-TKVGMAPRGVVKMVLDGLIDTLNININKGFSVQLGDFGCF-------RPGINA 87

Query: 68  QT---NQEVKIDP--RRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSG 112
           ++    ++VK D   RR ++F      K+ +      R   ++  T+  G
Sbjct: 88  KSQDKQEDVKSDTVYRRKIIFTPGQYFKEMLTRASVTRANWENSETTSGG 137


>gi|303235665|ref|ZP_07322272.1| putative DNA-binding protein [Prevotella disiens FB035-09AN]
 gi|302484112|gb|EFL47100.1| putative DNA-binding protein [Prevotella disiens FB035-09AN]
          Length = 144

 Score = 33.7 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 23/46 (50%)

Query: 11 VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          V  I +E  LS  D +  + +L   + D+   G+++ ++   +F +
Sbjct: 38 VDRIVRETSLSAGDVSNALISLGAIVRDALELGQSVDLADLGSFRI 83


>gi|21674641|ref|NP_662706.1| hypothetical protein CT1827 [Chlorobium tepidum TLS]
 gi|21647844|gb|AAM73048.1| hypothetical protein CT1827 [Chlorobium tepidum TLS]
          Length = 387

 Score = 33.7 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 7   RSDL---VKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHV 56
           R +L    + I+    G+   ++ R       E+ ++  +G    ++  F +F +
Sbjct: 124 RKELTGDAERIASVRLGMEASEARRLAKA-LGELFEAMKKGTGRFELRGFGSFTL 177


>gi|291613608|ref|YP_003523765.1| prophage CP4-57 regulatory [Sideroxydans lithotrophicus ES-1]
 gi|291583720|gb|ADE11378.1| prophage CP4-57 regulatory [Sideroxydans lithotrophicus ES-1]
          Length = 191

 Score = 33.7 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 61  SRVGRNLQTNQEVKIDPRR 79
           +R+GRN  T   +KI   +
Sbjct: 162 ARIGRNPITGATIKIKSTK 180


>gi|260175007|ref|ZP_05761419.1| hypothetical protein BacD2_24336 [Bacteroides sp. D2]
 gi|315923240|ref|ZP_07919480.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697115|gb|EFS33950.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 152

 Score = 33.7 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 12/86 (13%)

Query: 10  LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL-- 67
           L   +++  G+ R      +    + +      G +++   F +F       R   N   
Sbjct: 28  LCNEVNQRTGIHRAMVDVILKGAEDTMITFLEEGFSVRFGEFGSF-------RPAINAAS 80

Query: 68  QTNQEVKIDP---RRVVVFKASSILK 90
           +  +E        RR +VF   +  K
Sbjct: 81  KDKEEDVNAATIIRRKIVFTPGTKFK 106


>gi|254884022|ref|ZP_05256732.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254836815|gb|EET17124.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 164

 Score = 33.7 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 2  SKTITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57
          S+ +T     + IS      +R D    +    + + +  + G+ I++    TF + 
Sbjct: 28 SEIMTLDKFAEHISTHGSKYNRADIQAVLIQAVDCMREQLLAGQRIQMGDLGTFSIH 84


>gi|112253281|gb|ABI14228.1| major basic nuclear protein [Pfiesteria piscicida]
          Length = 111

 Score = 33.7 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 25/58 (43%)

Query: 4  TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61
          +IT+  L  +IS E  + + D ++ +T L   +     +   + +   A    + K +
Sbjct: 18 SITKGGLADAISAETEVKKSDCSKVLTALAEVVAKEVKKTGKVIVPGIARIVTRTKKA 75


>gi|107026732|ref|YP_624243.1| histone-like DNA-binding protein [Burkholderia cenocepacia AU 1054]
 gi|170735932|ref|YP_001777192.1| histone family protein DNA-binding protein [Burkholderia
           cenocepacia MC0-3]
 gi|105896106|gb|ABF79270.1| histone-like DNA-binding protein [Burkholderia cenocepacia AU 1054]
 gi|169818120|gb|ACA92702.1| histone family protein DNA-binding protein [Burkholderia
           cenocepacia MC0-3]
          Length = 149

 Score = 33.7 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFH---VKQKG 60
           T++ L   I++   +  K     +  L N +  S   +G     +          V  K 
Sbjct: 53  TKASLATHIAERAAVEVKAVKAVLVALENVVLGSVHKKGAGEFTLPGLLKITAQVVPAKK 112

Query: 61  SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92
            R G++  T +E     +     V  +A   LK  
Sbjct: 113 KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 147


>gi|78062953|ref|YP_372861.1| histone-like DNA-binding protein [Burkholderia sp. 383]
 gi|77970838|gb|ABB12217.1| Histone-like DNA-binding protein [Burkholderia sp. 383]
          Length = 149

 Score = 33.7 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 6   TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFH---VKQKG 60
           T++ L   I++   +  K     +  L N +  S   +G     +          V  K 
Sbjct: 53  TKASLATHIAERAAVEVKAVKAVLVALENVVLGSVHKKGAGEFTLPGLLKITAQVVPAKK 112

Query: 61  SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92
            R G++  T +E     +     V  +A   LK  
Sbjct: 113 KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 147


>gi|317063466|ref|ZP_07927951.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689142|gb|EFS25977.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 106

 Score = 33.7 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 9/82 (10%), Positives = 26/82 (31%)

Query: 24  DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVF 83
           ++   +   +  I         + +  F TF  K+   R   ++  N       R  + F
Sbjct: 21  EAKEKLELFWEVIFAGIATERKVIVKDFGTFEAKKLKPRKIYDIHKNSLYMTKERTALKF 80

Query: 84  KASSILKKRIMDDMRGRKCNKD 105
           +  +   + +   +     + +
Sbjct: 81  RVKNGFMEIVNKKVNNYGLSDE 102


>gi|265755674|ref|ZP_06090295.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263234280|gb|EEZ19873.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 344

 Score = 33.7 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 7   RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDS 39
           R+DL K+I+    LS+ ++ + V    N I ++
Sbjct: 237 RNDLAKAIANNTNLSKPEADKMVEQYMNLIDNA 269


>gi|189459607|ref|ZP_03008392.1| hypothetical protein BACCOP_00233 [Bacteroides coprocola DSM
          17136]
 gi|189433689|gb|EDV02674.1| hypothetical protein BACCOP_00233 [Bacteroides coprocola DSM
          17136]
          Length = 136

 Score = 33.7 bits (77), Expect = 9.4,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 22/48 (45%)

Query: 9  DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56
          ++   I +   ++R D+   + +L   + D    GE +++    +F +
Sbjct: 38 EMADRIQQMCTVTRADTMAVLISLGTVMRDGLCAGEIVRLGDLGSFQI 85


>gi|34558250|ref|NP_908065.1| excinuclease ABC subunit B [Wolinella succinogenes DSM 1740]
 gi|81832798|sp|Q7M806|UVRB_WOLSU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|34483969|emb|CAE10965.1| EXINUCLEASE ABC SUBUNIT B [Wolinella succinogenes]
          Length = 658

 Score = 33.7 bits (77), Expect = 9.5,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 8   SDLVKSISKEFGL-----SRKDSTRFVTTLFNEICDSAVRGEAIKIS 49
           + + + I +  GL       +DS   V  LF+EI     RGE + I+
Sbjct: 408 AQIAEQIVRPTGLLDPLYEVRDSQNQVAALFDEIKAVVARGERVLIT 454


>gi|84503009|ref|ZP_01001111.1| hypothetical protein OB2597_04273 [Oceanicola batsensis HTCC2597]
 gi|84388754|gb|EAQ01625.1| hypothetical protein OB2597_04273 [Oceanicola batsensis HTCC2597]
          Length = 125

 Score = 33.7 bits (77), Expect = 9.8,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 8  SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV--GR 65
           DL+ +++   GL R         +  ++  +  +G A+ +       +K K ++   GR
Sbjct: 39 KDLLAAVTDAGGLKRSKVRAVTEEVLRQLGVALGQGRAVSLPGLG--KIKTKRAKTVGGR 96


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.195    0.647 

Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,811,062,570
Number of Sequences: 14124377
Number of extensions: 163728830
Number of successful extensions: 416223
Number of sequences better than 10.0: 5047
Number of HSP's better than 10.0 without gapping: 8075
Number of HSP's successfully gapped in prelim test: 467
Number of HSP's that attempted gapping in prelim test: 406569
Number of HSP's gapped (non-prelim): 8587
length of query: 114
length of database: 4,842,793,630
effective HSP length: 81
effective length of query: 33
effective length of database: 3,698,719,093
effective search space: 122057730069
effective search space used: 122057730069
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.9 bits)
S2: 77 (33.7 bits)