HHsearch alignment for GI: 254780497 and conserved domain: PRK12404
>PRK12404 stage V sporulation protein AD; Provisional.
Probab=98.96 E-value=3.2e-08 Score=72.20 Aligned_cols=232 Identities=19% Similarity=0.237 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99999999999997402123544336650122334589853100112202686444421012200346788899896415
Q gi|254780497|r 52 TASLGEAAARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSGFVYAVTTADSYIRSGV 131 (324)
Q Consensus 52 ~~~la~~Aa~~al~~a~~~~~~Id~ii~~s~~~~~~~p~~a~~i~~~LGl~~~~~~di~~~C~~~~~al~~A~~li~~g~ 131 (324)
T Consensus 54 E~~m~~~A~~~al~Ka~l~~~dId~~~aGDLln-Q~i~--ssf~ar~l~iP---f~GlyGACST~~E~L~laa~~vd~g~ 127 (334)
T PRK12404 54 HKKLFEEACSRATEKAKLRKDDIQFVLAGDLIN-QITP--TSFAARTLGTP---YLGLFGACSTSMEGLALGASIVNAKG 127 (334)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCEEEEECHHHH-HHHH--HHHHHHHCCCC---EEEHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999987499978864896122443-2578--77889864998---01113566778999999999984665
Q ss_pred CCCCEEEEECCCC---CCCC----C-CC-CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEECCC
Q ss_conf 5653167630224---3222----4-56-632323454431234402654465434454101232035555561775487
Q gi|254780497|r 132 VRRVMVIGSDTFS---RIVD----W-SD-RSTCVLFGDGAGALILEGVEVKGSSMADTGILSTYLCSDGSYIDKLYVDGG 202 (324)
Q Consensus 132 ~~~~Lvv~~e~~S---~~~d----~-~d-~~~~~lfGDGAaA~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (324)
T Consensus 128 A~~vla~tSSH~~tAErQFR~P~EyG~QrpptAqWTVTGaGa~il~~~~~~p~------I-t~~--TiGkVvD-----~G 193 (334)
T PRK12404 128 AKYLLTGASSHNTAVEKQFRYPTEYGGQKPPTAQWTVTGAGAAILSKTGHGPR------V-TSA--TIGRVVD-----MG 193 (334)
T ss_pred HHHEEEEECCCCHHHHHHCCCCHHCCCCCCCCCCEEEECEEEEEEECCCCCCE------E-EEE--EEEEEEE-----CC
T ss_conf 43502320445203665425822116779986627887618999943899977------9-898--7788876-----58
Q ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC---CCHHHHHHHHHHCCCC--HHHHHH---
Q ss_conf 65444332001032024445577777778888987400100012102444---4415899999971978--767336---
Q gi|254780497|r 203 PSTSRTVGCIRMEGKAVFKYAVEKAVELIEKVFDSTHLTIENIDWFVPHQ---ANWRIINSIVDKMKIP--FDKVIV--- 274 (324)
Q Consensus 203 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~L~~~gl~~~did~~~~Hq---~~~~~~~~~~~~lgl~--~e~~~~--- 274 (324)
T Consensus 194 i~D~-----~nM-G----aAMAPAA~dTI~~hf~D~g~~p~dYDlI~TGDLG~vG~~i~~~Ll~~~g~~i~~~~~~DCG~ 263 (334)
T PRK12404 194 LTDP-----FNM-G----GAMAPAAVDTIEAHLRDRQIDASYYDLIVTGDLGHVGREIAYDLLHKHGTKVTSEQFQDCGL 263 (334)
T ss_pred CCCC-----CCC-H----HHHHHHHHHHHHHHHHHCCCCHHHCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCE
T ss_conf 8884-----302-5----55547899999999997099923445799664388789999999998198887455376674
Q ss_pred -HHHH-----HCCCH---HHHHHHH-HHHHHHCCCCCCCCEEEEEEECCCCC
Q ss_conf -5865-----19330---1269999-99999806889998999999714501
Q gi|254780497|r 275 -TVDI-----HGNTS---AASIPLA-LAVAVKEGRVKKGDCLLLEAMGGGFT 316 (324)
Q Consensus 275 -~~~~-----~Gn~~---sas~~~~-L~~~~~~g~l~~Gd~vll~~~G~G~s 316 (324)
T Consensus 264 ~Iy~~~Q~v~aGGSGcgCSA~V~~g~il~~m~~g~~---krvL~VaTGALlS 312 (334)
T PRK12404 264 LIYREGQPVIAGASGPGCSATVVYGHLLNRMKRGEL---KKILVVATGALLS 312 (334)
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC---EEEEEEECCHHCC
T ss_conf 634689875688765336899999999999964873---0899997503138