HHsearch alignment for GI: 254780497 and conserved domain: TIGR02813
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA; InterPro: IPR004432 Members of this entry represent PfaA, which is involved in omega-3 polyunsaturated fatty acid biosynthesis, for example PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is found together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologues of PfaA, also included in this entry, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis; an alternative to the more familiar iterated mechanism of chain extension and desaturation, and like PfaA the more distant homologues are likewise found near genes for homologues of PfaB, PfaC, and/or PfaD..
Probab=96.63 E-value=0.003 Score=40.51 Aligned_cols=187 Identities=19% Similarity=0.314 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEE------EECCCCCCCCCC-----CCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 999999999974021235443366------501223345898-----531001122026864444210122003467888
Q gi|254780497|r 55 LGEAAARDALHHAEMSVDDIDLII------VATSTPDQTFPS-----TAVNIQNRLGMKRGFAFDMQAVCSGFVYAVTTA 123 (324)
Q Consensus 55 la~~Aa~~al~~a~~~~~~Id~ii------~~s~~~~~~~p~-----~a~~i~~~LGl~~~~~~di~~~C~~~~~al~~A 123 (324)
T Consensus 141 LQyPVL~KV~K~SG~~d~D~~~lI~KF~~~Yi~-WEENSFPG~LGNVIsGRIANRFDlGG~NCV-VDAACAGSLAA~~~A 218 (2773)
T TIGR02813 141 LQYPVLKKVFKASGVEDEDSEMLIKKFQDQYIH-WEENSFPGSLGNVISGRIANRFDLGGMNCV-VDAACAGSLAALRLA 218 (2773)
T ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCHHHCCHHHHHCCCCCCHH-HHHHHHHHHHHHHHH
T ss_conf 033368888741588764689999987621344-414578976433010101100015884256-666436679999999
Q ss_pred HHHHHHCCCCCCEE---EEECC-------CCC--------CCCCCCCCC-CCCCCCCCCEEEEECCCCCCCCCCC--CCC
Q ss_conf 99896415565316---76302-------243--------222456632-3234544312344026544654344--541
Q gi|254780497|r 124 DSYIRSGVVRRVMV---IGSDT-------FSR--------IVDWSDRST-CVLFGDGAGALILEGVEVKGSSMAD--TGI 182 (324)
Q Consensus 124 ~~li~~g~~~~~Lv---v~~e~-------~S~--------~~d~~d~~~-~~lfGDGAaA~ll~~~~~~~~~~~~--~~~ 182 (324)
T Consensus 219 ls~L~E~RS-e~MI~GGVC~DNSP~MYMSFSKTPAFTT~E~I~PFD~DSKGMMIGEGIGM~AlKRLeDAERDGD~iYaV~ 297 (2773)
T TIGR02813 219 LSELLEGRS-EMMITGGVCTDNSPFMYMSFSKTPAFTTNEDIQPFDIDSKGMMIGEGIGMVALKRLEDAERDGDRIYAVI 297 (2773)
T ss_pred HHHHCCCCC-CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 986302532-1456275324888730202367876567885343314567544316555565332110105887789987
Q ss_pred EEEEEECCCCCCCCEEECCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 01232035555561775487654443320010320244455777777788889874001000121024444415899999
Q gi|254780497|r 183 LSTYLCSDGSYIDKLYVDGGPSTSRTVGCIRMEGKAVFKYAVEKAVELIEKVFDSTHLTIENIDWFVPHQANWRIINSIV 262 (324)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~L~~~gl~~~did~~~~Hq~~~~~~~~~~ 262 (324)
T Consensus 298 KGvGaSSDGkFKS-IYA------------PRP~G----------QAKAL~RAYdDAGF~P~~~GliEAHGTGT~-AGD~A 353 (2773)
T TIGR02813 298 KGVGASSDGKFKS-IYA------------PRPEG----------QAKALKRAYDDAGFAPHTVGLIEAHGTGTA-AGDVA 353 (2773)
T ss_pred ECCCCCCCCCEEE-EEC------------CCCCH----------HHHHHHHHHHHCCCCCCCEEEEECCCCCCC-CCCCH
T ss_conf 3101376873223-217------------89844----------689987546432799751100621677764-12202
Q ss_pred HHCCCC
Q ss_conf 971978
Q gi|254780497|r 263 DKMKIP 268 (324)
Q Consensus 263 ~~lgl~ 268 (324)
T Consensus 354 EF~GL~ 359 (2773)
T TIGR02813 354 EFSGLV 359 (2773)
T ss_pred HHCCCC
T ss_conf 331430