HHsearch alignment for GI: 254780497 and conserved domain: TIGR02845
>TIGR02845 spore_V_AD stage V sporulation protein AD; InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation ..
Probab=95.33 E-value=0.04 Score=33.30 Aligned_cols=66 Identities=18% Similarity=0.398 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCHHHH------HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 7777778888987400100--012102444441589------99999719787673365865193301269999999998
Q gi|254780497|r 225 EKAVELIEKVFDSTHLTIE--NIDWFVPHQANWRII------NSIVDKMKIPFDKVIVTVDIHGNTSAASIPLALAVAVK 296 (324)
Q Consensus 225 ~~~~~~i~~~L~~~gl~~~--did~~~~Hq~~~~~~------~~~~~~lgl~~e~~~~~~~~~Gn~~sas~~~~L~~~~~ 296 (324)
T Consensus 52 ~lm~~Av~~aL~Ka~l~~~PP~vD~~LA----GDLLNQ~~~anFvAR~L~iP---f---lGLygACsTs~E~L~~gA~lv 121 (331)
T TIGR02845 52 KLMEDAVNLALKKANLKKDPPDVDFFLA----GDLLNQIITANFVARELGIP---F---LGLYGACSTSMETLALGAMLV 121 (331)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEH----HHHHHHHHHHHHHHHHCCCC---C---EECCCHHHHHHHHHHHHHHHH
T ss_conf 9999999998753587127872111201----03666789998988745888---2---340213578999999999998
Q ss_pred CCCC
Q ss_conf 0688
Q gi|254780497|r 297 EGRV 300 (324)
Q Consensus 297 ~g~l 300 (324)
T Consensus 122 ~GGf 125 (331)
T TIGR02845 122 DGGF 125 (331)
T ss_pred HCCC
T ss_conf 3200