HHsearch alignment for GI: 254780497 and conserved domain: cd00825
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=99.75 E-value=3.3e-17 Score=129.57 Aligned_cols=245 Identities=27% Similarity=0.359 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCE----EEEECCCCCCC---------------------CCCCCCCHHHHHHCCCCCC
Q ss_conf 9999999999999740212354433----66501223345---------------------8985310011220268644
Q gi|254780497|r 52 TASLGEAAARDALHHAEMSVDDIDL----IIVATSTPDQT---------------------FPSTAVNIQNRLGMKRGFA 106 (324)
Q Consensus 52 ~~~la~~Aa~~al~~a~~~~~~Id~----ii~~s~~~~~~---------------------~p~~a~~i~~~LGl~~~~~ 106 (324)
T Consensus 11 vsl~al~aa~eAl~dAGl~~~~~~~~r~GV~~Gs~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~-Gp~ 89 (332)
T cd00825 11 VSILGFEAAERAIADAGLSREYQKNPIVGVVVGTGGGSPRFQVFGADAMRAVGPYVVTKAMFPGASGQIATPLGIH-GPA 89 (332)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC-CCC
T ss_conf 9999999999999975999344578888999996883188898531232236864246655348999999996898-963
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCC-----------C------CC-CCCCCCCCCCCCCCCEEEEE
Q ss_conf 442101220034678889989641556531676302243-----------2------22-45663232345443123440
Q gi|254780497|r 107 FDMQAVCSGFVYAVTTADSYIRSGVVRRVMVIGSDTFSR-----------I------VD-WSDRSTCVLFGDGAGALILE 168 (324)
Q Consensus 107 ~di~~~C~~~~~al~~A~~li~~g~~~~~Lvv~~e~~S~-----------~------~d-~~d~~~~~lfGDGAaA~ll~ 168 (324)
T Consensus 90 ~tv~taCaS~l~Ai~~A~~~i~~G~~d~aivgg~~~~~~~~~~~~~~~~~~~~~~~~~rpFd~~~~G~v~gEGa~~lvLe 169 (332)
T cd00825 90 YDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEELAAPMDCEFDAMGALSTPEKASRTFDAAADGFVFGDGAGALVVE 169 (332)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCHHHHHH
T ss_conf 03135416889999999999983899874620312117989999999727789898878887889972002654035540
Q ss_pred CCCCCCCCCC--CCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 2654465434--45410123203555556177548765444332001032024445577777778888987400100012
Q gi|254780497|r 169 GVEVKGSSMA--DTGILSTYLCSDGSYIDKLYVDGGPSTSRTVGCIRMEGKAVFKYAVEKAVELIEKVFDSTHLTIENID 246 (324)
Q Consensus 169 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~L~~~gl~~~did 246 (324)
T Consensus 170 ~~~~A~~rg~~i~a~i~g~~~~~dg~~~---------------~~~~p~--------~~~~~~ai~~Al~~agi~p~~I~ 226 (332)
T cd00825 170 ELEHALARGAHIYAEIVGTAATIDGAGM---------------GAFAPS--------AEGLARAAKEALAVAGLTVWDID 226 (332)
T ss_pred HHHHHHHCCCCEEEEECCCEEECCCCCC---------------CCCCCC--------HHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 0888875289620331134587789878---------------887979--------99999999999998498820014
Q ss_pred CCCCCCCCHHHH-----HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHH---HHHCCCCCC----------------
Q ss_conf 102444441589-----99999719787673365865193301269999999---998068899----------------
Q gi|254780497|r 247 WFVPHQANWRII-----NSIVDKMKIPFDKVIVTVDIHGNTSAASIPLALAV---AVKEGRVKK---------------- 302 (324)
Q Consensus 247 ~~~~Hq~~~~~~-----~~~~~~lgl~~e~~~~~~~~~Gn~~sas~~~~L~~---~~~~g~l~~---------------- 302 (324)
T Consensus 227 yI~ahgtGt~~~D~~E~~Al~~~fg~~~~~v~S~Ks~~GH~~~AsG~~~li~~~lal~~~~ipp~~n~~~~~~~~~~~~~ 306 (332)
T cd00825 227 YLVAHGTGTPIGDVKELKLLRSEFGDKSPAVSATKAMTGNLSSAAVVLAVDEAVLMLEHGFIPPSIHIEELDEAGLNIVT 306 (332)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 79917786855559999999998578998210574564455265699999999999863960899998999833256677
Q ss_pred ------CCEEEEEEECCCCCEEEE
Q ss_conf ------989999997145014568
Q gi|254780497|r 303 ------GDCLLLEAMGGGFTSGTV 320 (324)
Q Consensus 303 ------Gd~vll~~~G~G~s~~a~ 320 (324)
T Consensus 307 ~~~~~~~~~~~~nsfGfGG~Na~v 330 (332)
T cd00825 307 ETTPRELRTALLNGFGLGGTNATL 330 (332)
T ss_pred CCCCCCCCEEEEECCCCCCEEEEE
T ss_conf 776899989999670268140688