HHsearch alignment for GI: 254780497 and conserved domain: cd00829
>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.
Probab=99.73 E-value=2.3e-16 Score=124.25 Aligned_cols=202 Identities=21% Similarity=0.200 Sum_probs=142.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 89889999999999999974021235443366501223345898531001122026864444210122003467888998
Q gi|254780497|r 47 GKDETTASLGEAAARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSGFVYAVTTADSY 126 (324)
Q Consensus 47 ~~~e~~~~la~~Aa~~al~~a~~~~~~Id~ii~~s~~~~~~~p~~a~~i~~~LGl~~~~~~di~~~C~~~~~al~~A~~l 126 (324)
T Consensus 11 ~~~~s~~eL~~~a~~~Al~dagi~~~~ID~v~~g~~~~~~~~~~~~~~~a~~~G~~~~~~~~v~~~c~Sg~~ai~~Aa~~ 90 (375)
T cd00829 11 RSDRSPLELAAEAARAALDDAGLEPADIDAVVVGNAAGGRFQSFPGALIAEYLGLLGKPATRVEAAGASGSAAVRAAAAA 90 (375)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCHHHHCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 99969999999999999998391989949999991287553476999999982999986588689886999999999999
Q ss_pred HHHCCCCCCEEEEECCCCCCCCCC----------C---------------------------------------------
Q ss_conf 964155653167630224322245----------6---------------------------------------------
Q gi|254780497|r 127 IRSGVVRRVMVIGSDTFSRIVDWS----------D--------------------------------------------- 151 (324)
Q Consensus 127 i~~g~~~~~Lvv~~e~~S~~~d~~----------d--------------------------------------------- 151 (324)
T Consensus 91 I~~G~~~~vl~~G~Es~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~a~~~~~~~g~~re~~~~~a~~~~~~A~ 170 (375)
T cd00829 91 IASGLADVVLVVGAEKMSDVPTGDEAGGRASDLEWEGPEPPGGLTPPALYALAARRYMHRYGTTREDLAKVAVKNHRNAA 170 (375)
T ss_pred HHCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 97799998999987516778765554445677203332024466578999999999999979799999999999998644
Q ss_pred --CC-------------------------CCCCCCCCCCEEEEECCCCCCCCCCCCC--CEEEEEECCCCCCCCEEECCC
Q ss_conf --63-------------------------2323454431234402654465434454--101232035555561775487
Q gi|254780497|r 152 --RS-------------------------TCVLFGDGAGALILEGVEVKGSSMADTG--ILSTYLCSDGSYIDKLYVDGG 202 (324)
Q Consensus 152 --~~-------------------------~~~lfGDGAaA~ll~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 202 (324)
T Consensus 171 ~np~A~~~~~~t~e~~~~~~~i~~Pl~~~~~~~~~DGAaa~vl~s~~~A~~~-~~~p~~i~g~~~~~~~~~-----~~-- 242 (375)
T cd00829 171 RNPYAQFRKPITVEDVLNSRMIADPLRLLDCCPVSDGAAAVVLASEERAREL-TDRPVWILGVGAASDTPS-----LS-- 242 (375)
T ss_pred CCCCCCCCCCCCHHHHHCCCCCCCCCCHHHCCCCCCCCEEEEEECHHHHHHC-CCCCEEEEEEEEEECCCC-----CC--
T ss_conf 2861202588589998234764466214315766664058999639999876-999379999999952654-----35--
Q ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHH
Q ss_conf 65444332001032024445577777778888987400100012102444441589999997197876
Q gi|254780497|r 203 PSTSRTVGCIRMEGKAVFKYAVEKAVELIEKVFDSTHLTIENIDWFVPHQANWRIINSIVDKMKIPFD 270 (324)
Q Consensus 203 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~L~~~gl~~~did~~~~Hq~~~~~~~~~~~~lgl~~e 270 (324)
T Consensus 243 --~~--~~----------~~~~~~~~~A~~~al~~aGl~~~DiD~~Ei~eaFa~~~l~~~e~lGl~~~ 296 (375)
T cd00829 243 --ER--DD----------FLSLDAARLAARRAYKMAGITPDDIDVAELYDCFTIAELLALEDLGFCEK 296 (375)
T ss_pred --CC--CC----------CCCCHHHHHHHHHHHHHCCCCHHHCCEEEECCCCHHHHHHHHHHCCCCCC
T ss_conf --67--85----------22232599999999998199978765642015766999999998099977