HHsearch alignment for GI: 254780497 and conserved domain: cd00831

>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=100.00  E-value=0  Score=424.33  Aligned_cols=314  Identities=23%  Similarity=0.287  Sum_probs=252.5

Q ss_pred             EEEEEEEEEECCCCEECHHHHHHHHCCC------------HHHHHHCCCCCEEEEECCC---------------------
Q ss_conf             2699999996498411788999880999------------8781102475188982898---------------------
Q gi|254780497|r    3 RSTVRGIGLSLPRRVLSNSDLESIVDTS------------DGWIKRRVGISRRHIAGKD---------------------   49 (324)
Q Consensus         3 ~~~I~~~g~ylP~~~v~~~el~~~~~~~------------~~~i~~~~GI~~R~~~~~~---------------------   49 (324)
T Consensus         1 ~A~I~gigt~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tgI~~R~~~~~~~~~~~~~~~~~~~~~~~r~~~   80 (361)
T cd00831           1 AATILAIGTAVPPHRVPQSELVDFYRRLFSSDHLPELKEKLKRLCAKTGIETRYLVLPGGEETYAPRPEMSPSLDERNDI   80 (361)
T ss_pred             CEEEEEEEEECCCEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCCCCCCCHHHHHHH
T ss_conf             91999988777992675999999998744333435678999999972698615555266122024565558887888777


Q ss_pred             --CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHCC-CCCCCCCC-CCCCCHHHHHHHHHH
Q ss_conf             --89999999999999974021235443366501223345898531001122026-86444421-012200346788899
Q gi|254780497|r   50 --ETTASLGEAAARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMK-RGFAFDMQ-AVCSGFVYAVTTADS  125 (324)
Q Consensus        50 --e~~~~la~~Aa~~al~~a~~~~~~Id~ii~~s~~~~~~~p~~a~~i~~~LGl~-~~~~~di~-~~C~~~~~al~~A~~  125 (324)
T Consensus        81 ~~~~~~~la~~Aa~~AL~~ag~~~~dId~lI~~Tst-~~~~Ps~a~~v~~~LGl~~~~~~~dl~~~gCsg~~~aL~~A~~  159 (361)
T cd00831          81 ALEEARELAEEAARGALDEAGLRPSDIDHLVVNTST-GNPTPSLDAMLINRLGLRPDVKRYNLGGMGCSAGAIALDLAKD  159 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCC-CCCCCCHHHHHHHHHCCCCCHHEEECCCCCCHHHHHHHHHHHH
T ss_conf             998999999999999999819898999999998659-9998976999999738998700355646755689999999999


Q ss_pred             HHHHCCCCCCEEEEECCCCCCCCCCCCC----CCCCCCCCCCEEEEECCCCCCCCCCC-CCCEEEEEECCCCCCCCEEEC
Q ss_conf             8964155653167630224322245663----23234544312344026544654344-541012320355555617754
Q gi|254780497|r  126 YIRSGVVRRVMVIGSDTFSRIVDWSDRS----TCVLFGDGAGALILEGVEVKGSSMAD-TGILSTYLCSDGSYIDKLYVD  200 (324)
Q Consensus       126 li~~g~~~~~Lvv~~e~~S~~~d~~d~~----~~~lfGDGAaA~ll~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  200 (324)
T Consensus       160 ~i~~g~~~~vLVV~~E~~S~~~~~~d~~~~~v~~~LFGDGA~A~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  238 (361)
T cd00831         160 LLEANPGARVLVVSTELCSLWYRGPDHRSMLVGNALFGDGAAAVLLSNDPRDRRRERPLFELVRAASTLLPDSEDAMGW-  238 (361)
T ss_pred             HHHHCCCCEEEEEEEEECCEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC-
T ss_conf             9982999769999612112020688757775542000477258998426766656665268837776124688876666-


Q ss_pred             CCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHH---HH
Q ss_conf             87654443320010320244455777777788889874--00100012102444441589999997197876733---65
Q gi|254780497|r  201 GGPSTSRTVGCIRMEGKAVFKYAVEKAVELIEKVFDST--HLTIENIDWFVPHQANWRIINSIVDKMKIPFDKVI---VT  275 (324)
Q Consensus       201 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~L~~~--gl~~~did~~~~Hq~~~~~~~~~~~~lgl~~e~~~---~~  275 (324)
T Consensus       239 ---~~~~~g~~~~-l~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~di~~~~~Hq~~~~Ii~~v~~~Lgl~~~~~~~s~~~  314 (361)
T cd00831         239 ---HLGEEGLTFV-LSRDVPRLVEKNLERVLRKLLARLGIGLFKLAFDHWCVHPGGRAVLDAVEKALGLSPEDLEASRMV  314 (361)
T ss_pred             ---CCCCCCEEEE-ECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             ---5057753785-063699999999999999999982589996772558878786899999999829896883257878


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEEE
Q ss_conf             86519330126999999999806889998999999714501456878
Q gi|254780497|r  276 VDIHGNTSAASIPLALAVAVKEGRVKKGDCLLLEAMGGGFTSGTVLL  322 (324)
Q Consensus       276 ~~~~Gn~~sas~~~~L~~~~~~g~l~~Gd~vll~~~G~G~s~~a~ll  322 (324)
T Consensus       315 l~~~GNtsSaSip~~L~~~~~~~~~~~Gd~vl~~afG~Glt~~~~v~  361 (361)
T cd00831         315 LRRYGNMSSSSVLYVLAYMEAKGRVKRGDRGLLIAFGPGFTCESAVW  361 (361)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHEEEEECC
T ss_conf             98638539889999999999739999999899999810405531209