HHsearch alignment for GI: 254780497 and conserved domain: cd00831
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=100.00 E-value=0 Score=424.33 Aligned_cols=314 Identities=23% Similarity=0.287 Sum_probs=252.5
Q ss_pred EEEEEEEEEECCCCEECHHHHHHHHCCC------------HHHHHHCCCCCEEEEECCC---------------------
Q ss_conf 2699999996498411788999880999------------8781102475188982898---------------------
Q gi|254780497|r 3 RSTVRGIGLSLPRRVLSNSDLESIVDTS------------DGWIKRRVGISRRHIAGKD--------------------- 49 (324)
Q Consensus 3 ~~~I~~~g~ylP~~~v~~~el~~~~~~~------------~~~i~~~~GI~~R~~~~~~--------------------- 49 (324)
T Consensus 1 ~A~I~gigt~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tgI~~R~~~~~~~~~~~~~~~~~~~~~~~r~~~ 80 (361)
T cd00831 1 AATILAIGTAVPPHRVPQSELVDFYRRLFSSDHLPELKEKLKRLCAKTGIETRYLVLPGGEETYAPRPEMSPSLDERNDI 80 (361)
T ss_pred CEEEEEEEEECCCEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCCCCCCCHHHHHHH
T ss_conf 91999988777992675999999998744333435678999999972698615555266122024565558887888777
Q ss_pred --CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHCC-CCCCCCCC-CCCCCHHHHHHHHHH
Q ss_conf --89999999999999974021235443366501223345898531001122026-86444421-012200346788899
Q gi|254780497|r 50 --ETTASLGEAAARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMK-RGFAFDMQ-AVCSGFVYAVTTADS 125 (324)
Q Consensus 50 --e~~~~la~~Aa~~al~~a~~~~~~Id~ii~~s~~~~~~~p~~a~~i~~~LGl~-~~~~~di~-~~C~~~~~al~~A~~ 125 (324)
T Consensus 81 ~~~~~~~la~~Aa~~AL~~ag~~~~dId~lI~~Tst-~~~~Ps~a~~v~~~LGl~~~~~~~dl~~~gCsg~~~aL~~A~~ 159 (361)
T cd00831 81 ALEEARELAEEAARGALDEAGLRPSDIDHLVVNTST-GNPTPSLDAMLINRLGLRPDVKRYNLGGMGCSAGAIALDLAKD 159 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCC-CCCCCCHHHHHHHHHCCCCCHHEEECCCCCCHHHHHHHHHHHH
T ss_conf 998999999999999999819898999999998659-9998976999999738998700355646755689999999999
Q ss_pred HHHHCCCCCCEEEEECCCCCCCCCCCCC----CCCCCCCCCCEEEEECCCCCCCCCCC-CCCEEEEEECCCCCCCCEEEC
Q ss_conf 8964155653167630224322245663----23234544312344026544654344-541012320355555617754
Q gi|254780497|r 126 YIRSGVVRRVMVIGSDTFSRIVDWSDRS----TCVLFGDGAGALILEGVEVKGSSMAD-TGILSTYLCSDGSYIDKLYVD 200 (324)
Q Consensus 126 li~~g~~~~~Lvv~~e~~S~~~d~~d~~----~~~lfGDGAaA~ll~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 200 (324)
T Consensus 160 ~i~~g~~~~vLVV~~E~~S~~~~~~d~~~~~v~~~LFGDGA~A~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 238 (361)
T cd00831 160 LLEANPGARVLVVSTELCSLWYRGPDHRSMLVGNALFGDGAAAVLLSNDPRDRRRERPLFELVRAASTLLPDSEDAMGW- 238 (361)
T ss_pred HHHHCCCCEEEEEEEEECCEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC-
T ss_conf 9982999769999612112020688757775542000477258998426766656665268837776124688876666-
Q ss_pred CCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHH---HH
Q ss_conf 87654443320010320244455777777788889874--00100012102444441589999997197876733---65
Q gi|254780497|r 201 GGPSTSRTVGCIRMEGKAVFKYAVEKAVELIEKVFDST--HLTIENIDWFVPHQANWRIINSIVDKMKIPFDKVI---VT 275 (324)
Q Consensus 201 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~L~~~--gl~~~did~~~~Hq~~~~~~~~~~~~lgl~~e~~~---~~ 275 (324)
T Consensus 239 ---~~~~~g~~~~-l~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~di~~~~~Hq~~~~Ii~~v~~~Lgl~~~~~~~s~~~ 314 (361)
T cd00831 239 ---HLGEEGLTFV-LSRDVPRLVEKNLERVLRKLLARLGIGLFKLAFDHWCVHPGGRAVLDAVEKALGLSPEDLEASRMV 314 (361)
T ss_pred ---CCCCCCEEEE-ECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf ---5057753785-063699999999999999999982589996772558878786899999999829896883257878
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEEE
Q ss_conf 86519330126999999999806889998999999714501456878
Q gi|254780497|r 276 VDIHGNTSAASIPLALAVAVKEGRVKKGDCLLLEAMGGGFTSGTVLL 322 (324)
Q Consensus 276 ~~~~Gn~~sas~~~~L~~~~~~g~l~~Gd~vll~~~G~G~s~~a~ll 322 (324)
T Consensus 315 l~~~GNtsSaSip~~L~~~~~~~~~~~Gd~vl~~afG~Glt~~~~v~ 361 (361)
T cd00831 315 LRRYGNMSSSSVLYVLAYMEAKGRVKRGDRGLLIAFGPGFTCESAVW 361 (361)
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHEEEEECC
T ss_conf 98638539889999999999739999999899999810405531209