HHsearch alignment for GI: 254780497 and conserved domain: pfam08540

>pfam08540 HMG_CoA_synt_C Hydroxymethylglutaryl-coenzyme A synthase C terminal.
Probab=98.31  E-value=1.3e-05  Score=55.61  Aligned_cols=110  Identities=15%  Similarity=0.275  Sum_probs=67.1

Q ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHH---------HHCCCCCCCCCCCCCCCHHHHHHHHHHC------------------
Q ss_conf             1032024445577777778888987---------4001000121024444415899999971------------------
Q gi|254780497|r  213 RMEGKAVFKYAVEKAVELIEKVFDS---------THLTIENIDWFVPHQANWRIINSIVDKM------------------  265 (324)
Q Consensus       213 ~~~g~~~~~~~~~~~~~~i~~~L~~---------~gl~~~did~~~~Hq~~~~~~~~~~~~l------------------  265 (324)
T Consensus        29 ~VDGk~Si~cYl~ALd~cy~~Y~~K~~~~~~~~~~~~~ld~fd~~~FH~Py~KlvqKs~arl~~nD~~~~~~~~~~~~~~  108 (282)
T pfam08540        29 VVDGKLSLQCYLKALDSCYKNYCKKIEKQTKDGGTKFGLDDFDYVIFHSPYCKLVQKSLARLLYNDFLRNPSSDKGNGVY  108 (282)
T ss_pred             EECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCH
T ss_conf             44728899999999999999999998730023677663766778998575448999999999987653065520110001


Q ss_pred             -------CCCHH----------------------HH---HHHHHHHCCCHHHHHHHHHHHHHHCCCC--CCCCEEEEEEE
Q ss_conf             -------97876----------------------73---3658651933012699999999980688--99989999997
Q gi|254780497|r  266 -------KIPFD----------------------KV---IVTVDIHGNTSAASIPLALAVAVKEGRV--KKGDCLLLEAM  311 (324)
Q Consensus       266 -------gl~~e----------------------~~---~~~~~~~Gn~~sas~~~~L~~~~~~g~l--~~Gd~vll~~~  311 (324)
T Consensus       109 ~~l~~~~~~~~e~s~~dk~~ek~~~~~sk~~f~~kv~psl~~~~~vGNmYTaSlY~~L~SLL~~~~~~~L~GkRIg~FSY  188 (282)
T pfam08540       109 EKLEALGGLKLEDSYTDRDLEKAFMQLSKPLFKKKTKPSLLLPTQVGNMYTASLYAALASLLSHVSADELAGKRIGMFSY  188 (282)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC
T ss_conf             11100014644540100689999998708989863261878878607500699999999998437752348998999851


Q ss_pred             CCCCCEEEEEE
Q ss_conf             14501456878
Q gi|254780497|r  312 GGGFTSGTVLL  322 (324)
Q Consensus       312 G~G~s~~a~ll  322 (324)
T Consensus       189 GSGlaas~FS~  199 (282)
T pfam08540       189 GSGLAASLFSL  199 (282)
T ss_pred             CCCCCEEEEEE
T ss_conf             66611246758