HHsearch alignment for GI: 254780497 and conserved domain: pfam08540
>pfam08540 HMG_CoA_synt_C Hydroxymethylglutaryl-coenzyme A synthase C terminal.
Probab=98.31 E-value=1.3e-05 Score=55.61 Aligned_cols=110 Identities=15% Similarity=0.275 Sum_probs=67.1
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHH---------HHCCCCCCCCCCCCCCCHHHHHHHHHHC------------------
Q ss_conf 1032024445577777778888987---------4001000121024444415899999971------------------
Q gi|254780497|r 213 RMEGKAVFKYAVEKAVELIEKVFDS---------THLTIENIDWFVPHQANWRIINSIVDKM------------------ 265 (324)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~i~~~L~~---------~gl~~~did~~~~Hq~~~~~~~~~~~~l------------------ 265 (324)
T Consensus 29 ~VDGk~Si~cYl~ALd~cy~~Y~~K~~~~~~~~~~~~~ld~fd~~~FH~Py~KlvqKs~arl~~nD~~~~~~~~~~~~~~ 108 (282)
T pfam08540 29 VVDGKLSLQCYLKALDSCYKNYCKKIEKQTKDGGTKFGLDDFDYVIFHSPYCKLVQKSLARLLYNDFLRNPSSDKGNGVY 108 (282)
T ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCH
T ss_conf 44728899999999999999999998730023677663766778998575448999999999987653065520110001
Q ss_pred -------CCCHH----------------------HH---HHHHHHHCCCHHHHHHHHHHHHHHCCCC--CCCCEEEEEEE
Q ss_conf -------97876----------------------73---3658651933012699999999980688--99989999997
Q gi|254780497|r 266 -------KIPFD----------------------KV---IVTVDIHGNTSAASIPLALAVAVKEGRV--KKGDCLLLEAM 311 (324)
Q Consensus 266 -------gl~~e----------------------~~---~~~~~~~Gn~~sas~~~~L~~~~~~g~l--~~Gd~vll~~~ 311 (324)
T Consensus 109 ~~l~~~~~~~~e~s~~dk~~ek~~~~~sk~~f~~kv~psl~~~~~vGNmYTaSlY~~L~SLL~~~~~~~L~GkRIg~FSY 188 (282)
T pfam08540 109 EKLEALGGLKLEDSYTDRDLEKAFMQLSKPLFKKKTKPSLLLPTQVGNMYTASLYAALASLLSHVSADELAGKRIGMFSY 188 (282)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC
T ss_conf 11100014644540100689999998708989863261878878607500699999999998437752348998999851
Q ss_pred CCCCCEEEEEE
Q ss_conf 14501456878
Q gi|254780497|r 312 GGGFTSGTVLL 322 (324)
Q Consensus 312 G~G~s~~a~ll 322 (324)
T Consensus 189 GSGlaas~FS~ 199 (282)
T pfam08540 189 GSGLAASLFSL 199 (282)
T ss_pred CCCCCEEEEEE
T ss_conf 66611246758