RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780497|ref|YP_003064910.1| 3-oxoacyl-(acyl carrier protein) synthase III [Candidatus Liberibacter asiaticus str. psy62] (324 letters) >gnl|CDD|30680 COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein]. Length = 323 Score = 391 bits (1005), Expect = e-109 Identities = 186/328 (56%), Positives = 230/328 (70%), Gaps = 10/328 (3%) Query: 1 MIRSTVRGIGLSLPRRVLSNSDLESIVDTSDGWIKRRVGISRRHIAGKDETTASLGEAAA 60 M+ + + GIG LP RV++N+DLE VDTSD WI+ R GI R IA DETT+ L AA Sbjct: 1 MMNAKILGIGSYLPERVVTNADLEKRVDTSDEWIETRTGIRERRIAADDETTSDLAVEAA 60 Query: 61 RDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSGFVYAV 120 R AL A +S DDIDLIIVATSTPD FPSTA +Q RLG+ AFD+QA CSGF+YA+ Sbjct: 61 RKALEDAGISPDDIDLIIVATSTPDHLFPSTACLVQARLGLGGAPAFDLQAACSGFLYAL 120 Query: 121 TTADSYIRSGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVEVKGSSMADT 180 + AD IRSG + V+V+G++T SRI+DW+DR TCVLFGDGAGA++LE E D Sbjct: 121 SVADGLIRSGGYKNVLVVGAETLSRILDWTDRDTCVLFGDGAGAVVLEATED------DN 174 Query: 181 GILSTYLCSDGSYIDKLYVDGGPSTSRT----VGCIRMEGKAVFKYAVEKAVELIEKVFD 236 GIL T L SDGS D LY+ GG S + G + M+G+ VFK+AV + IE+V + Sbjct: 175 GILDTDLGSDGSQGDLLYLPGGGSATPKEESGGGLLVMDGREVFKFAVRAMPKAIEEVLE 234 Query: 237 STHLTIENIDWFVPHQANWRIINSIVDKMKIPFDKVIVTVDIHGNTSAASIPLALAVAVK 296 LT E+IDWFVPHQAN RII +I K+ IP +KV+VTVD +GNTSAASIPLAL A++ Sbjct: 235 KAGLTPEDIDWFVPHQANLRIIEAIAKKLGIPEEKVVVTVDKYGNTSAASIPLALDEALR 294 Query: 297 EGRVKKGDCLLLEAMGGGFTSGTVLLRW 324 EGR+K GD +LLEA GGG T G L+RW Sbjct: 295 EGRIKPGDLVLLEAFGGGLTWGAALVRW 322 >gnl|CDD|29417 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.. Length = 320 Score = 383 bits (985), Expect = e-107 Identities = 165/321 (51%), Positives = 212/321 (66%), Gaps = 12/321 (3%) Query: 8 GIGLSLPRRVLSNSDLESIVDTSDGWIKRRVGISRRHIAGKDETTASLGEAAARDALHHA 67 GIG LP RV++N +LE +DTSD WI+ R GI R IA ETT+ L AA+ AL A Sbjct: 6 GIGSYLPERVVTNDELEKRLDTSDEWIRTRTGIRERRIADPGETTSDLAVEAAKKALEDA 65 Query: 68 EMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSGFVYAVTTADSYI 127 + DDIDLIIVATSTPD FP+TA +Q RLG K AFD+ A CSGF+Y ++TA I Sbjct: 66 GIDADDIDLIIVATSTPDYLFPATACLVQARLGAKNAAAFDINAACSGFLYGLSTAAGLI 125 Query: 128 RSGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVEVKGSSMADTGILSTYL 187 RSG + V+V+G++T SRI+DW+DRST VLFGDGAGA++LE E D GIL + L Sbjct: 126 RSGGAKNVLVVGAETLSRILDWTDRSTAVLFGDGAGAVVLEATEE------DPGILDSVL 179 Query: 188 CSDGSYIDKLYVDGGPSTS------RTVGCIRMEGKAVFKYAVEKAVELIEKVFDSTHLT 241 SDGS D L + G S S + M+G+ VFK+AV E IE+ + LT Sbjct: 180 GSDGSGADLLTIPAGGSRSPFEDAEGGDPYLVMDGREVFKFAVRLMPESIEEALEKAGLT 239 Query: 242 IENIDWFVPHQANWRIINSIVDKMKIPFDKVIVTVDIHGNTSAASIPLALAVAVKEGRVK 301 ++IDWFVPHQAN RII ++ ++ +P +KV+V +D +GNTSAASIPLAL A++EG++K Sbjct: 240 PDDIDWFVPHQANLRIIEAVAKRLGLPEEKVVVNLDRYGNTSAASIPLALDEAIEEGKLK 299 Query: 302 KGDCLLLEAMGGGFTSGTVLL 322 KGD +LL G G T G LL Sbjct: 300 KGDLVLLLGFGAGLTWGAALL 320 >gnl|CDD|164577 CHL00203, fabH, 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional. Length = 326 Score = 277 bits (710), Expect = 3e-75 Identities = 131/326 (40%), Positives = 197/326 (60%), Gaps = 18/326 (5%) Query: 9 IGLSLPRRVLSNSDLESIVDTSDGWIKRRVGISRRHIAGKDETTASLGEAAARDALHHAE 68 G S+P + N E I++TSD WI R GI +RH+A + L AA AL A Sbjct: 8 TGSSVPNFSVENQQFEDIIETSDHWISTRTGIKKRHLAPSSTSLTKLAAEAANKALDKAH 67 Query: 69 MSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSGFVYAVTTADSYIR 128 M +IDLII+ATSTPD F S A +Q +G R AFD+ A CSGF+ A+ TA +I+ Sbjct: 68 MDPLEIDLIILATSTPDDLFGS-ASQLQAEIGATRAVAFDITAACSGFILALVTATQFIQ 126 Query: 129 SGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVEVKGSSMADTGILSTYLC 188 +G + ++V+G+DT S+ +DWSDR TC+LFGDGAGA I+ G+S ++ IL LC Sbjct: 127 NGSYKNILVVGADTLSKWIDWSDRKTCILFGDGAGAAII------GASYENS-ILGFKLC 179 Query: 189 SDGSYIDKLYVDGGPSTSRTVG----------CIRMEGKAVFKYAVEKAVELIEKVFDST 238 +DG L + P +++ G I M GK V+K+AV + +I K ++ Sbjct: 180 TDGKLNSHLQLMNKPVNNQSFGTTKLPQGQYQSISMNGKEVYKFAVFQVPAVIIKCLNAL 239 Query: 239 HLTIENIDWFVPHQANWRIINSIVDKMKIPFDKVIVTVDIHGNTSAASIPLALAVAVKEG 298 +++I+ +DWF+ HQAN RI+ +I +++ +P K+I ++ +GNTSAASIPLAL A++ Sbjct: 240 NISIDEVDWFILHQANKRILEAIANRLSVPNSKMITNLEKYGNTSAASIPLALDEAIQNN 299 Query: 299 RVKKGDCLLLEAMGGGFTSGTVLLRW 324 +++ G ++L G G T G ++L+W Sbjct: 300 KIQPGQIIVLSGFGAGLTWGAIVLKW 325 >gnl|CDD|29414 cd00827, init_cond_enzymes, "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.. Length = 324 Score = 180 bits (458), Expect = 4e-46 Identities = 109/329 (33%), Positives = 163/329 (49%), Gaps = 20/329 (6%) Query: 6 VRGIGLSLPRRVLSNSDLESIVDTSDGWIKRRVGISRRHIAGKDETTASLGEAAARDALH 65 + IG LPR + N +L + K GI +RH+AG DE ++ AAR AL Sbjct: 4 IEAIGAYLPRYRVDNEELAEGL--GVDPGKYTTGIGQRHMAGDDEDVPTMAVEAARRALE 61 Query: 66 HAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSGFVYAVTTADS 125 A + DDI L+IVAT +P S A + LG+ AFD++ C G A+ A + Sbjct: 62 RAGIDPDDIGLLIVATESPIDKGKSAATYLAELLGLTNAEAFDLKQACYGGTAALQLAAN 121 Query: 126 YIRSGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVEVKGSSMADTGILST 185 + SG R +V+ SD S ++D GDGA A+++ + + GI+ST Sbjct: 122 LVESGPWRYALVVASDIASYLLDEGSALEPT-LGDGAAAMLVS----RNPGILAAGIVST 176 Query: 186 YLCSDGSYIDKLY--VDGGPSTSRTVGCIR-----MEGKAVFKYAVEKAVELIEKVFDST 238 + SD Y Y +DGG + G+AVF+ A + +++ K D Sbjct: 177 HSTSDPGYDFSPYPVMDGGYPKPCKLAYAIRLTAEPAGRAVFEAAHKLIAKVVRKALDRA 236 Query: 239 HLTIENIDWFVPHQAN-WRIINSIVDKMKIPFDKVIVTVDI----HGNTSAASIPLALAV 293 L+ E+ID+FVPHQ N +I+ ++ K+ P +K T I GN AASI L LA Sbjct: 237 GLS-EDIDYFVPHQPNGKKILEAVAKKLGGPPEKASQTRWILLRRVGNMYAASILLGLAS 295 Query: 294 AVKEGRVKKGDCLLLEAMGGGFTSGTVLL 322 ++ G++K GD +LL + G GFT+ +L Sbjct: 296 LLESGKLKAGDRVLLFSYGSGFTAEAFVL 324 >gnl|CDD|29418 cd00831, CHS_like, Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.. Length = 361 Score = 94.9 bits (236), Expect = 3e-20 Identities = 77/331 (23%), Positives = 134/331 (40%), Gaps = 30/331 (9%) Query: 13 LPRRVLSNSDLE---SIVDTSDGWIKRR----VGISRRHIAGKDETTASLGEAAARDALH 65 +R+ + + +E ++ + R + R+ +E L E AAR AL Sbjct: 40 KLKRLCAKTGIETRYLVLPGGEETYAPRPEMSPSLDERNDIALEEARE-LAEEAARGALD 98 Query: 66 HAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAV------CSGFVYA 119 A + DID ++V TST + T PS + NRLG++ D++ CS A Sbjct: 99 EAGLRPSDIDHLVVNTSTGNPT-PSLDAMLINRLGLRP----DVKRYNLGGMGCSAGAIA 153 Query: 120 VTTADSYIRSGVVRRVMVIGSDTFSRIVDWSD-RSTCV---LFGDGAGALILEGVEVKGS 175 + A + + RV+V+ ++ S D RS V LFGDGA A++L Sbjct: 154 LDLAKDLLEANPGARVLVVSTELCSLWYRGPDHRSMLVGNALFGDGAAAVLLSNDPRDRR 213 Query: 176 SMADTG-ILSTYLCSDGSYIDKLYVDGGPSTSRTVGCIRMEGKAVFKYAVEKAVELIEKV 234 ++ D + G T R + V K +L+ ++ Sbjct: 214 RERPLFELVRAASTLLPDSEDAMGWHLG-EEGLTFVLSRDVPRLVEKNLERVLRKLLARL 272 Query: 235 FDSTHLTIENIDWFVPHQANWRIINSIVDKMKIPFDKVIVTVDI---HGNTSAASIPLAL 291 L D + H +++++ + + + + + + +GN S++S+ L Sbjct: 273 GIG--LFKLAFDHWCVHPGGRAVLDAVEKALGLSPEDLEASRMVLRRYGNMSSSSVLYVL 330 Query: 292 AVAVKEGRVKKGDCLLLEAMGGGFTSGTVLL 322 A +GRVK+GD LL A G GFT + + Sbjct: 331 AYMEAKGRVKRGDRGLLIAFGPGFTCESAVW 361 >gnl|CDD|73238 cd00825, decarbox_cond_enzymes, decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).. Length = 332 Score = 94.4 bits (234), Expect = 4e-20 Identities = 71/343 (20%), Positives = 117/343 (34%), Gaps = 99/343 (28%) Query: 55 LGEAAARDALHHA----EMSVDDIDLIIVATSTPD---------------------QTFP 89 LG AA A+ A E + I ++V T FP Sbjct: 14 LGFEAAERAIADAGLSREYQKNPIVGVVVGTGGGSPRFQVFGADAMRAVGPYVVTKAMFP 73 Query: 90 STAVNIQNRLGMKRGFAFDMQAVCSGFVYAVTTADSYIRSGVVRRVMVIGSDTFSRIVD- 148 + I LG+ G A+D+ A C+G ++A++ A +++G V+ GS+ + +D Sbjct: 74 GASGQIATPLGIH-GPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEELAAPMDC 132 Query: 149 -----------------WSDRSTCVLFGDGAGALILEGVEVKGSSMADT--GILSTYLCS 189 + + +FGDGAGAL++E +E + A I+ T Sbjct: 133 EFDAMGALSTPEKASRTFDAAADGFVFGDGAGALVVEELEHALARGAHIYAEIVGTAATI 192 Query: 190 DGSYIDKLYVDGGPSTSRTVGCIRMEGKAVFKYAVEKAVELIEKVFDSTHLTIENIDWFV 249 DG+ G F + E ++ LT+ +ID+ V Sbjct: 193 DGA-----------------------GMGAFAPSAEGLARAAKEALAVAGLTVWDIDYLV 229 Query: 250 PHQANWRIINSIVDKMKIPFDK-----VIVTVDIHGNTSAASIPLALAVAVKEGRVK--- 301 H I + K+ V T + GN S+A++ LA+ AV Sbjct: 230 AHGTGTPIGDVKELKLLRSEFGDKSPAVSATKAMTGNLSSAAVVLAVDEAVLMLEHGFIP 289 Query: 302 ----------------------KGDCLLLEAMGGGFTSGTVLL 322 + LL G G T+ T++L Sbjct: 290 PSIHIEELDEAGLNIVTETTPRELRTALLNGFGLGGTNATLVL 332 >gnl|CDD|33231 COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]. Length = 377 Score = 93.8 bits (233), Expect = 6e-20 Identities = 78/333 (23%), Positives = 126/333 (37%), Gaps = 49/333 (14%) Query: 8 GIGLSLPRRVLSNSDLESIVDTSDGWIKRRVGISRRHIAGKDETTASLGEAAARDALHHA 67 GIG +PR + +L IK+ +G+ + + DE ++ AAR+AL A Sbjct: 7 GIGAYIPRYRIKLEELARAWGVDPEKIKKGLGVEEKSVPPWDEDAVTMAVEAARNALKRA 66 Query: 68 EMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRG-FAFDMQAVCSGFVYAVTTADSY 126 ++ I +IV + + TA + LG+ A D++ C A+ A + Sbjct: 67 DIDPSKIGAVIVGSESGPDAVKPTATIVAEALGLNPSARAADVEFACYAGTAALQAAIGW 126 Query: 127 IRSGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALILEG-------VEVKGSSMAD 179 + SG++ +VIG+DT + T G GA A ++ E GS D Sbjct: 127 VESGMISYGLVIGADTAQYAPGDALEYT---AGAGAVAFLIGKNPPIVAEFEGTGSYTTD 183 Query: 180 T-----GILSTYLCSDGSYIDKLYVDGGPSTSRTVGCIRMEGKAVFKYAVEKAVELIEKV 234 T Y DG + + Y VE A + Sbjct: 184 TPDFWRPDGQPYPYVDGRFSEPAYFK----------------------HVENA---AKGY 218 Query: 235 FDSTHLTIENIDWFVPHQANWRIINSIVDKMKIPFDKV---IVTVDIHGNTSAASIPLAL 291 + T L+ ++ D+ V HQ N + + ++V +V GNT S+ L L Sbjct: 219 MEKTGLSPDDFDYIVFHQPNGKFPKKAAKSLGFKEEQVKPGLVYPQRIGNTYTGSLLLGL 278 Query: 292 AVAVKEGRVKKGDCLLLEAMGGG----FTSGTV 320 A + + GD +LL + G G S TV Sbjct: 279 ASLLDNAK-LPGDRILLFSYGSGAGSEAFSITV 310 >gnl|CDD|73194 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.. Length = 254 Score = 93.5 bits (232), Expect = 6e-20 Identities = 60/282 (21%), Positives = 100/282 (35%), Gaps = 51/282 (18%) Query: 55 LGEAAARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCS 114 LG AA A+ A +S I +IV T+ F A + LG+ G A+ + C+ Sbjct: 10 LGFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGISGGPAYSVNQACA 69 Query: 115 GFVYAVTTADSYIRSGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVE--V 172 + A+ A +++G V+ GS+ F +FGDGA A ++E E + Sbjct: 70 TGLTALALAVQQVQNGKADIVLAGGSEEF-------------VFGDGAAAAVVESEEHAL 116 Query: 173 KGSSMADTGILSTYLCSDGSYIDKLYVDGGPSTSRTVGCIRMEGKAVFKYAVEKAVELIE 232 + + I+ST DG+ V + E Sbjct: 117 RRGAHPQAEIVSTAATFDGAS------------------------MVPAVSGEGLARAAR 152 Query: 233 KVFDSTHLTIENIDWFVPHQANWRIIN-----SIVDKMKIPFDKVIVTVDIHGNTSAASI 287 K + LT +ID+ H I + +D + V T+ + G+ A+ Sbjct: 153 KALEGAGLTPSDIDYVEAHGTGTPIGDAVELALGLDPDGVRSPAVSATLIMTGHPLGAAG 212 Query: 288 PLALAVAVKEGRVKKG-------DCLLLEAMGGGFTSGTVLL 322 L + + +LL G G T+ V+L Sbjct: 213 LAILDELLLMLEHEFIPPTPREPRTVLLLGFGLGGTNAAVVL 254 >gnl|CDD|33230 COG3424, BcsA, Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 356 Score = 79.2 bits (195), Expect = 1e-15 Identities = 78/363 (21%), Positives = 141/363 (38%), Gaps = 54/363 (14%) Query: 4 STVRGIGLSLPRRVLSNSDLESIVDTSDGWIKRR---------VGISRRHIAGKD----- 49 + + + +LP + S++ R I+RRH+ Sbjct: 2 AVIASVATALPPYRYNQSEITDSFAELPFQEGREDIPRVLHANAQINRRHLVLPLDWYRE 61 Query: 50 ------------ETTASLGEAAARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQN 97 E LG A R AL + + +DID ++ TST T PS I Sbjct: 62 PHGFGEKNEIFIEEAVPLGVDALRRALDGSPLRPEDIDAVVTVTSTGLAT-PSLDARIVG 120 Query: 98 RLGM----KRGFAFDMQAVCSGFVYAVTTADSYIRSGVVRRVMVIGSDTFSRIVDWSDRS 153 LG+ +R + + C+ + A Y R+ V+V+ + S ++D + Sbjct: 121 ELGLSPDTRRVPVWGLG--CAAGAAGLARARDYCRAAPDANVLVVCVELCSLTYVFADDT 178 Query: 154 TC-----VLFGDGAGALILEGVEVKGSSMAD-TGILSTYLCSDGSYIDKLYVDGGPSTSR 207 LFGDGA A+++ G IL ++ LY D Sbjct: 179 KSNLVGTALFGDGAAAVVVSGDRRAEGKRPLRPDILDSFS--------TLYPDSEDIMGW 230 Query: 208 TVG--CIRMEGKAVFKYAVEKAV-ELIEKVFDSTHLTIENIDWFVPHQANWRIINSIVDK 264 VG +++ +E + + + L+IE+I+ +V H ++I++ + Sbjct: 231 DVGDQGLKVVLSRDLPNLIESYLAPNVTTFLATHGLSIEDIEAWVVHPGGPKVIDAYEES 290 Query: 265 MKIPFDKVIVTVDI---HGNTSAASIPLALAVAVKEGRVKKGDCLLLEAMGGGFTSGTVL 321 + + + + ++ D+ +GN S+A++ L +++ K G L+ AMG GF S VL Sbjct: 291 LGLSPEALELSWDVLREYGNMSSATVLFVLEDTLQKAP-KSGSRGLMFAMGPGFCSELVL 349 Query: 322 LRW 324 L W Sbjct: 350 LDW 352 >gnl|CDD|29416 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.. Length = 375 Score = 58.0 bits (140), Expect = 4e-09 Identities = 27/103 (26%), Positives = 45/103 (43%) Query: 49 DETTASLGEAAARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFD 108 D + L AAR AL A + DID ++V + + I LG+ A Sbjct: 13 DRSPLELAAEAARAALDDAGLEPADIDAVVVGNAAGGRFQSFPGALIAEYLGLLGKPATR 72 Query: 109 MQAVCSGFVYAVTTADSYIRSGVVRRVMVIGSDTFSRIVDWSD 151 ++A + AV A + I SG+ V+V+G++ S + + Sbjct: 73 VEAAGASGSAAVRAAAAAIASGLADVVLVVGAEKMSDVPTGDE 115 >gnl|CDD|29421 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.. Length = 406 Score = 34.0 bits (78), Expect = 0.051 Identities = 36/170 (21%), Positives = 55/170 (32%), Gaps = 56/170 (32%) Query: 53 ASLGEAAARDALHHAEMSVDDIDL----IIVATSTPDQTFPSTAVNIQNRLGMKRGFAFD 108 A AAA +AL A + +++D +++ + A G +R F Sbjct: 72 AQFALAAAEEALADAGLDPEELDPERIGVVIGSGIGGLATIEEAYRALLEKGPRRVSPFF 131 Query: 109 --------------MQAVCSGFVYAVTTADS-----------YIRSGVVRRVMVIGSDTF 143 ++ G Y V+TA + IR G V+ G++ Sbjct: 132 VPMALPNMAAGQVAIRLGLRGPNYTVSTACASGAHAIGDAARLIRLGRADVVIAGGAEAL 191 Query: 144 -------------------------SRIVDWSDRSTCVLFGDGAGALILE 168 SR D DR VL G+GAG L+LE Sbjct: 192 ITPLTLAGFAALRALSTRNDDPEKASRPFD-KDRDGFVL-GEGAGVLVLE 239 >gnl|CDD|30532 COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism]. Length = 392 Score = 33.4 bits (76), Expect = 0.083 Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 1/113 (0%) Query: 34 IKRRVGISRRHIAGKDETTASLGEAAARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAV 93 + S +A + A + R VDD+ L V + + Sbjct: 14 FGKFGDGSLAELAAEALGAALIDAGLERAPADVDAADVDDVILGCVLQAGEQGQNIARQA 73 Query: 94 NIQNRLGMKRGFAFDMQAVCSGFVYAVTTADSYIRSGVVRRVMVIGSDTFSRI 146 + L A + C+ + AV A I SG V+ G + S Sbjct: 74 ALAAGLPGSVP-AVTVNRACASGLAAVRLAAQAIASGEADVVLAGGVEKMSDA 125 >gnl|CDD|38947 KOG3743, KOG3743, KOG3743, Recombination signal binding protein-J kappa(CBF1, Su(H), HS2NF5) [Transcription]. Length = 622 Score = 33.5 bits (76), Expect = 0.086 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 10/84 (11%) Query: 235 FDSTHLTIENIDWFVPHQANWRIINSIVDKMKIPFDKVIVTVDIHGNTSAASIPLALAVA 294 F +T E WF+ A W II++ DK + PF + + G ++ +P+ + V+ Sbjct: 447 FQATPCPTEANRWFLNDGAAWTIIST--DKAEYPFYEAM------GQVASPVMPVPVVVS 498 Query: 295 VKEGRVKKGDCLLLEAMGGGFTSG 318 ++ GD +LE G F Sbjct: 499 LE--LDGGGDVAMLELHGQNFVPN 520 >gnl|CDD|29411 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.. Length = 386 Score = 33.2 bits (76), Expect = 0.11 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 5/101 (4%) Query: 48 KDETTASLGEAAARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKR---G 104 KD + LG A + L A + +++D +I+ + A G+ Sbjct: 18 KDVSADDLGAAVIKALLERAGLDPEEVDDVIMGNVLQAGEGQNPARQAALLAGLPESVPA 77 Query: 105 FAFDMQAVCSGFVYAVTTADSYIRSGVVRRVMVIGSDTFSR 145 + C + AV A I +G V+ G ++ SR Sbjct: 78 TTVNRV--CGSGLQAVALAAQSIAAGEADVVVAGGVESMSR 116 >gnl|CDD|30652 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]. Length = 412 Score = 30.3 bits (68), Expect = 0.81 Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 28/107 (26%) Query: 90 STAVNIQNRLGMKRGFAFDMQAVCSGFVYAVTTADSYIRSGVVRRVMVIGSD-------- 141 A N+ G+K G + C+ +A+ A IR G V+ G++ Sbjct: 140 LAAGNVAIVFGLK-GPNYTPVTACATGAHAIGDAVRLIRLGKADVVIAGGAEAAITPLGI 198 Query: 142 -----------------TFSRIVDWSDRSTCVLFGDGAGALILEGVE 171 SR D +R V+ G+GAGAL+LE +E Sbjct: 199 AGFEAMRALSTRNDDPEKASRPFD-KNRDGFVI-GEGAGALVLEELE 243 Score = 27.2 bits (60), Expect = 6.7 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%) Query: 57 EAAARDALHHAEMSVDDIDLIIV-ATSTP 84 A R AL A ++ +DID I TSTP Sbjct: 279 IRAMRAALADAGLTPEDIDYINAHGTSTP 307 >gnl|CDD|36014 KOG0795, KOG0795, KOG0795, Chorismate mutase [Amino acid transport and metabolism]. Length = 262 Score = 29.6 bits (66), Expect = 1.2 Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 8/62 (12%) Query: 212 IRMEGKAVFKYAVEKAVELIEKVFDSTHLTIEN-----IDWFVPHQANWRIINSIVDKMK 266 IR E +F V++ +E +++ V +++ V + + Sbjct: 25 IRQEDSIIFNLLERAQFPYNADVYEENAFGMEGFKGSLLEYMV---RETEKLHAKVRRYE 81 Query: 267 IP 268 P Sbjct: 82 SP 83 >gnl|CDD|35472 KOG0251, KOG0251, KOG0251, Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms, Intracellular trafficking, secretion, and vesicular transport]. Length = 491 Score = 29.2 bits (65), Expect = 1.5 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 11/63 (17%) Query: 48 KDETTASLG---------EAAARDALHHAEMSVDD--IDLIIVATSTPDQTFPSTAVNIQ 96 KD T+ E A A H +M D +D I+ ATS+ + PS + Sbjct: 7 KDRTSIGKASVASAGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSPASIPSCVHALS 66 Query: 97 NRL 99 RL Sbjct: 67 ERL 69 >gnl|CDD|146626 pfam04091, Sec15, Exocyst complex subunit Sec15-like. Length = 280 Score = 29.2 bits (66), Expect = 1.6 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 3/69 (4%) Query: 185 TYLCSDGSYIDKLYVDGGPSTSRTVGCIRMEGKAVFKYAVEKAVELIEKVFDST---HLT 241 Y ++KL R G I + FK A + A + I ++ +S + Sbjct: 103 EYFEKACDELEKLLAQLRNIPQRIGGPISLAATKKFKSARKAAEKRIFELVNSKIDDFME 162 Query: 242 IENIDWFVP 250 + DW Sbjct: 163 LAEYDWTPT 171 >gnl|CDD|29415 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.. Length = 407 Score = 28.5 bits (63), Expect = 2.6 Identities = 17/84 (20%), Positives = 24/84 (28%), Gaps = 3/84 (3%) Query: 62 DALHHAEMSVDDIDLIIVATST-PDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSGFVYAV 120 L V+ + VNI L G C+ + A+ Sbjct: 112 RFLRRGGKLDARAVNPYVSPKWMLSPNTVAGWVNI--LLLSSHGPIKTPVGACATALEAL 169 Query: 121 TTADSYIRSGVVRRVMVIGSDTFS 144 A IRSG V+V G + Sbjct: 170 DLAVEAIRSGKADIVVVGGVEDPL 193 >gnl|CDD|30621 COG0272, Lig, NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]. Length = 667 Score = 28.2 bits (63), Expect = 3.2 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 6/64 (9%) Query: 229 ELIEKVFDSTHLTIE---NIDWFVPHQANWRIINSIVDKMKIPFDKVIVTVDIH--GNTS 283 LI+ + D LT E +++ F A ++N+I K P + + + I G T+ Sbjct: 465 GLIKDIADLYTLTEEDLLSLEGFGEKSAE-NLLNAIEKSKKQPLARFLYALGIRHVGETT 523 Query: 284 AASI 287 A S+ Sbjct: 524 AKSL 527 >gnl|CDD|34707 COG5104, PRP40, Splicing factor [RNA processing and modification]. Length = 590 Score = 27.8 bits (61), Expect = 3.8 Identities = 10/68 (14%), Positives = 20/68 (29%) Query: 61 RDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSGFVYAV 120 ++A + ++L+ S+P F V+++N G R Sbjct: 386 KNAYPLIKDDPRFLNLLGRTGSSPLDLFFDFIVDLENMYGFARRSYERETRTGQISPTDR 445 Query: 121 TTADSYIR 128 D Sbjct: 446 RAVDEIFE 453 >gnl|CDD|34583 COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]. Length = 328 Score = 27.5 bits (61), Expect = 4.9 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 9/50 (18%) Query: 34 IKRRVGISRRHIAG--KDETTASLGEA-------AARDALHHAEMSVDDI 74 + R G+SRR + + E S AR L +S+ +I Sbjct: 242 LADRAGLSRRQLERLFRAELGVSPARYYLRLRLERARRLLEQTRLSIAEI 291 >gnl|CDD|36416 KOG1202, KOG1202, KOG1202, Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]. Length = 2376 Score = 27.6 bits (61), Expect = 5.0 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 4/35 (11%) Query: 284 AASIPLALAVA----VKEGRVKKGDCLLLEAMGGG 314 A+++P+ + A V G++KKG+ +L+ A GG Sbjct: 1530 ASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGG 1564 >gnl|CDD|35327 KOG0104, KOG0104, KOG0104, Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]. Length = 902 Score = 26.9 bits (59), Expect = 7.2 Identities = 8/19 (42%), Positives = 15/19 (78%) Query: 62 DALHHAEMSVDDIDLIIVA 80 DAL A++S+D+I+ +I+ Sbjct: 353 DALKKAQLSLDEINQVILF 371 >gnl|CDD|36555 KOG1341, KOG1341, KOG1341, Na+/K+ transporter [Inorganic ion transport and metabolism]. Length = 854 Score = 26.9 bits (59), Expect = 7.6 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%) Query: 1 MIRSTVRGIGLSLPRRVLSNSDLESIVDTSDGWIKRRVGIS 41 +IR RG+ +L R +L SD I + D KRR G Sbjct: 802 LIRGRHRGLPYALDRAILLPSDKNFIDEEED--YKRRHGKK 840 >gnl|CDD|48660 cd03564, ANTH_AP180_CALM, ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machinery for clathrin-mediated membrane budding.. Length = 117 Score = 26.8 bits (59), Expect = 8.7 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%) Query: 57 EAAARDALHHAEMSVDD--IDLIIVATSTPDQTFPSTAVNIQNRLGMK 102 E A + A H E D + II TS+ + PS A + RL + Sbjct: 2 EKAVKKATSHDEAPPKDKHVRKIIAGTSSSPASIPSFASALSRRLLDR 49 >gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337 Score = 26.8 bits (60), Expect = 9.6 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Query: 263 DKMKIPFDKVIVTVDIHGNTSAASIPLALAV-AVKEGRVKKGDCLLLEAMGGG 314 + + +P D ++V + + +A PLA+ AV+ V GD +L+ +G G Sbjct: 119 EYIVVPADALLVPEGLSLDQAALVEPLAIGAHAVRRAGVTAGDTVLV--VGAG 169 >gnl|CDD|29420 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.. Length = 421 Score = 26.7 bits (59), Expect = 9.8 Identities = 34/147 (23%), Positives = 52/147 (35%), Gaps = 25/147 (17%) Query: 39 GISRRHIAGKDETTASLGEAAARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNR 98 G S +AG T A++ D L D+ID A + + A I Sbjct: 103 GYSPESLAGSR--TGVFVGASSSDYLELLARDPDEID----AYAATGTSRAFLANRISYF 156 Query: 99 LGMKRGFAFDMQAVCSGFVYAVTTADSYIRSGVVRRVMVIGSD---------TFSRIVDW 149 + RG + + CS + A+ A +RSG +V G + FS+ Sbjct: 157 FDL-RGPSLTVDTACSSSLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGML 215 Query: 150 SDRSTCVLF---------GDGAGALIL 167 S C F G+G G ++L Sbjct: 216 SPDGRCRPFDADADGYVRGEGVGVVVL 242 >gnl|CDD|31762 COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]. Length = 535 Score = 26.4 bits (58), Expect = 9.9 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Query: 265 MKIPFDKVIVTVDIHGNTSAASIPLALAVAVKEGRVK 301 + D ++ I+ A P A AVA+K+GR+ Sbjct: 1 AAMAADLILHNGRIYTMDEAR--PTAEAVAIKDGRIV 35 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.321 0.136 0.397 Gapped Lambda K H 0.267 0.0751 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,777,819 Number of extensions: 198366 Number of successful extensions: 518 Number of sequences better than 10.0: 1 Number of HSP's gapped: 491 Number of HSP's successfully gapped: 43 Length of query: 324 Length of database: 6,263,737 Length adjustment: 94 Effective length of query: 230 Effective length of database: 4,232,491 Effective search space: 973472930 Effective search space used: 973472930 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (25.7 bits)