RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780497|ref|YP_003064910.1| 3-oxoacyl-(acyl carrier
protein) synthase III [Candidatus Liberibacter asiaticus str. psy62]
         (324 letters)



>gnl|CDD|30680 COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein].
          Length = 323

 Score =  391 bits (1005), Expect = e-109
 Identities = 186/328 (56%), Positives = 230/328 (70%), Gaps = 10/328 (3%)

Query: 1   MIRSTVRGIGLSLPRRVLSNSDLESIVDTSDGWIKRRVGISRRHIAGKDETTASLGEAAA 60
           M+ + + GIG  LP RV++N+DLE  VDTSD WI+ R GI  R IA  DETT+ L   AA
Sbjct: 1   MMNAKILGIGSYLPERVVTNADLEKRVDTSDEWIETRTGIRERRIAADDETTSDLAVEAA 60

Query: 61  RDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSGFVYAV 120
           R AL  A +S DDIDLIIVATSTPD  FPSTA  +Q RLG+    AFD+QA CSGF+YA+
Sbjct: 61  RKALEDAGISPDDIDLIIVATSTPDHLFPSTACLVQARLGLGGAPAFDLQAACSGFLYAL 120

Query: 121 TTADSYIRSGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVEVKGSSMADT 180
           + AD  IRSG  + V+V+G++T SRI+DW+DR TCVLFGDGAGA++LE  E       D 
Sbjct: 121 SVADGLIRSGGYKNVLVVGAETLSRILDWTDRDTCVLFGDGAGAVVLEATED------DN 174

Query: 181 GILSTYLCSDGSYIDKLYVDGGPSTSRT----VGCIRMEGKAVFKYAVEKAVELIEKVFD 236
           GIL T L SDGS  D LY+ GG S +       G + M+G+ VFK+AV    + IE+V +
Sbjct: 175 GILDTDLGSDGSQGDLLYLPGGGSATPKEESGGGLLVMDGREVFKFAVRAMPKAIEEVLE 234

Query: 237 STHLTIENIDWFVPHQANWRIINSIVDKMKIPFDKVIVTVDIHGNTSAASIPLALAVAVK 296
              LT E+IDWFVPHQAN RII +I  K+ IP +KV+VTVD +GNTSAASIPLAL  A++
Sbjct: 235 KAGLTPEDIDWFVPHQANLRIIEAIAKKLGIPEEKVVVTVDKYGNTSAASIPLALDEALR 294

Query: 297 EGRVKKGDCLLLEAMGGGFTSGTVLLRW 324
           EGR+K GD +LLEA GGG T G  L+RW
Sbjct: 295 EGRIKPGDLVLLEAFGGGLTWGAALVRW 322


>gnl|CDD|29417 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III
           (KASIII) initiates the elongation in type II fatty acid
           synthase systems. It is found in bacteria and plants.
           Elongation of fatty acids in the type II systems occurs
           by Claisen condensation of malonyl-acyl carrier protein
           (ACP) with acyl-ACP. KASIII initiates this process by
           specifically using acetyl-CoA over acyl-CoA..
          Length = 320

 Score =  383 bits (985), Expect = e-107
 Identities = 165/321 (51%), Positives = 212/321 (66%), Gaps = 12/321 (3%)

Query: 8   GIGLSLPRRVLSNSDLESIVDTSDGWIKRRVGISRRHIAGKDETTASLGEAAARDALHHA 67
           GIG  LP RV++N +LE  +DTSD WI+ R GI  R IA   ETT+ L   AA+ AL  A
Sbjct: 6   GIGSYLPERVVTNDELEKRLDTSDEWIRTRTGIRERRIADPGETTSDLAVEAAKKALEDA 65

Query: 68  EMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSGFVYAVTTADSYI 127
            +  DDIDLIIVATSTPD  FP+TA  +Q RLG K   AFD+ A CSGF+Y ++TA   I
Sbjct: 66  GIDADDIDLIIVATSTPDYLFPATACLVQARLGAKNAAAFDINAACSGFLYGLSTAAGLI 125

Query: 128 RSGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVEVKGSSMADTGILSTYL 187
           RSG  + V+V+G++T SRI+DW+DRST VLFGDGAGA++LE  E       D GIL + L
Sbjct: 126 RSGGAKNVLVVGAETLSRILDWTDRSTAVLFGDGAGAVVLEATEE------DPGILDSVL 179

Query: 188 CSDGSYIDKLYVDGGPSTS------RTVGCIRMEGKAVFKYAVEKAVELIEKVFDSTHLT 241
            SDGS  D L +  G S S           + M+G+ VFK+AV    E IE+  +   LT
Sbjct: 180 GSDGSGADLLTIPAGGSRSPFEDAEGGDPYLVMDGREVFKFAVRLMPESIEEALEKAGLT 239

Query: 242 IENIDWFVPHQANWRIINSIVDKMKIPFDKVIVTVDIHGNTSAASIPLALAVAVKEGRVK 301
            ++IDWFVPHQAN RII ++  ++ +P +KV+V +D +GNTSAASIPLAL  A++EG++K
Sbjct: 240 PDDIDWFVPHQANLRIIEAVAKRLGLPEEKVVVNLDRYGNTSAASIPLALDEAIEEGKLK 299

Query: 302 KGDCLLLEAMGGGFTSGTVLL 322
           KGD +LL   G G T G  LL
Sbjct: 300 KGDLVLLLGFGAGLTWGAALL 320


>gnl|CDD|164577 CHL00203, fabH, 3-oxoacyl-acyl-carrier-protein synthase 3;
           Provisional.
          Length = 326

 Score =  277 bits (710), Expect = 3e-75
 Identities = 131/326 (40%), Positives = 197/326 (60%), Gaps = 18/326 (5%)

Query: 9   IGLSLPRRVLSNSDLESIVDTSDGWIKRRVGISRRHIAGKDETTASLGEAAARDALHHAE 68
            G S+P   + N   E I++TSD WI  R GI +RH+A    +   L   AA  AL  A 
Sbjct: 8   TGSSVPNFSVENQQFEDIIETSDHWISTRTGIKKRHLAPSSTSLTKLAAEAANKALDKAH 67

Query: 69  MSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSGFVYAVTTADSYIR 128
           M   +IDLII+ATSTPD  F S A  +Q  +G  R  AFD+ A CSGF+ A+ TA  +I+
Sbjct: 68  MDPLEIDLIILATSTPDDLFGS-ASQLQAEIGATRAVAFDITAACSGFILALVTATQFIQ 126

Query: 129 SGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVEVKGSSMADTGILSTYLC 188
           +G  + ++V+G+DT S+ +DWSDR TC+LFGDGAGA I+      G+S  ++ IL   LC
Sbjct: 127 NGSYKNILVVGADTLSKWIDWSDRKTCILFGDGAGAAII------GASYENS-ILGFKLC 179

Query: 189 SDGSYIDKLYVDGGPSTSRTVG----------CIRMEGKAVFKYAVEKAVELIEKVFDST 238
           +DG     L +   P  +++ G           I M GK V+K+AV +   +I K  ++ 
Sbjct: 180 TDGKLNSHLQLMNKPVNNQSFGTTKLPQGQYQSISMNGKEVYKFAVFQVPAVIIKCLNAL 239

Query: 239 HLTIENIDWFVPHQANWRIINSIVDKMKIPFDKVIVTVDIHGNTSAASIPLALAVAVKEG 298
           +++I+ +DWF+ HQAN RI+ +I +++ +P  K+I  ++ +GNTSAASIPLAL  A++  
Sbjct: 240 NISIDEVDWFILHQANKRILEAIANRLSVPNSKMITNLEKYGNTSAASIPLALDEAIQNN 299

Query: 299 RVKKGDCLLLEAMGGGFTSGTVLLRW 324
           +++ G  ++L   G G T G ++L+W
Sbjct: 300 KIQPGQIIVLSGFGAGLTWGAIVLKW 325


>gnl|CDD|29414 cd00827, init_cond_enzymes, "initiating" condensing enzymes are a
           subclass of decarboxylating condensing enzymes,
           including beta-ketoacyl [ACP] synthase, type III and
           polyketide synthases, type III, which include chalcone
           synthase and related enzymes. They are characterized by
           the utlization of CoA substrate primers, as well as the
           nature of their active site residues..
          Length = 324

 Score =  180 bits (458), Expect = 4e-46
 Identities = 109/329 (33%), Positives = 163/329 (49%), Gaps = 20/329 (6%)

Query: 6   VRGIGLSLPRRVLSNSDLESIVDTSDGWIKRRVGISRRHIAGKDETTASLGEAAARDALH 65
           +  IG  LPR  + N +L   +       K   GI +RH+AG DE   ++   AAR AL 
Sbjct: 4   IEAIGAYLPRYRVDNEELAEGL--GVDPGKYTTGIGQRHMAGDDEDVPTMAVEAARRALE 61

Query: 66  HAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSGFVYAVTTADS 125
            A +  DDI L+IVAT +P     S A  +   LG+    AFD++  C G   A+  A +
Sbjct: 62  RAGIDPDDIGLLIVATESPIDKGKSAATYLAELLGLTNAEAFDLKQACYGGTAALQLAAN 121

Query: 126 YIRSGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVEVKGSSMADTGILST 185
            + SG  R  +V+ SD  S ++D          GDGA A+++     +   +   GI+ST
Sbjct: 122 LVESGPWRYALVVASDIASYLLDEGSALEPT-LGDGAAAMLVS----RNPGILAAGIVST 176

Query: 186 YLCSDGSYIDKLY--VDGGPSTSRTVGCIR-----MEGKAVFKYAVEKAVELIEKVFDST 238
           +  SD  Y    Y  +DGG      +           G+AVF+ A +   +++ K  D  
Sbjct: 177 HSTSDPGYDFSPYPVMDGGYPKPCKLAYAIRLTAEPAGRAVFEAAHKLIAKVVRKALDRA 236

Query: 239 HLTIENIDWFVPHQAN-WRIINSIVDKMKIPFDKVIVTVDI----HGNTSAASIPLALAV 293
            L+ E+ID+FVPHQ N  +I+ ++  K+  P +K   T  I     GN  AASI L LA 
Sbjct: 237 GLS-EDIDYFVPHQPNGKKILEAVAKKLGGPPEKASQTRWILLRRVGNMYAASILLGLAS 295

Query: 294 AVKEGRVKKGDCLLLEAMGGGFTSGTVLL 322
            ++ G++K GD +LL + G GFT+   +L
Sbjct: 296 LLESGKLKAGDRVLLFSYGSGFTAEAFVL 324


>gnl|CDD|29418 cd00831, CHS_like, Chalcone and stilbene synthases; plant-specific
           polyketide synthases (PKS) and related enzymes, also
           called type III PKSs. PKS generate an array of different
           products, dependent on the nature of the starter
           molecule. They share a common chemical strategy, after
           the starter molecule is loaded onto the active site
           cysteine, a carboxylative condensation reation extends
           the polyketide chain. Plant-specific PKS are dimeric
           iterative PKSs, using coenzyme A esters to deliver
           substrate to the active site, but they differ in the
           choice of starter molecule and the number of
           condensation reactions..
          Length = 361

 Score = 94.9 bits (236), Expect = 3e-20
 Identities = 77/331 (23%), Positives = 134/331 (40%), Gaps = 30/331 (9%)

Query: 13  LPRRVLSNSDLE---SIVDTSDGWIKRR----VGISRRHIAGKDETTASLGEAAARDALH 65
             +R+ + + +E    ++   +     R      +  R+    +E    L E AAR AL 
Sbjct: 40  KLKRLCAKTGIETRYLVLPGGEETYAPRPEMSPSLDERNDIALEEARE-LAEEAARGALD 98

Query: 66  HAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAV------CSGFVYA 119
            A +   DID ++V TST + T PS    + NRLG++     D++        CS    A
Sbjct: 99  EAGLRPSDIDHLVVNTSTGNPT-PSLDAMLINRLGLRP----DVKRYNLGGMGCSAGAIA 153

Query: 120 VTTADSYIRSGVVRRVMVIGSDTFSRIVDWSD-RSTCV---LFGDGAGALILEGVEVKGS 175
           +  A   + +    RV+V+ ++  S      D RS  V   LFGDGA A++L        
Sbjct: 154 LDLAKDLLEANPGARVLVVSTELCSLWYRGPDHRSMLVGNALFGDGAAAVLLSNDPRDRR 213

Query: 176 SMADTG-ILSTYLCSDGSYIDKLYVDGGPSTSRTVGCIRMEGKAVFKYAVEKAVELIEKV 234
                  ++           D +    G     T    R   + V K       +L+ ++
Sbjct: 214 RERPLFELVRAASTLLPDSEDAMGWHLG-EEGLTFVLSRDVPRLVEKNLERVLRKLLARL 272

Query: 235 FDSTHLTIENIDWFVPHQANWRIINSIVDKMKIPFDKVIVTVDI---HGNTSAASIPLAL 291
                L     D +  H     +++++   + +  + +  +  +   +GN S++S+   L
Sbjct: 273 GIG--LFKLAFDHWCVHPGGRAVLDAVEKALGLSPEDLEASRMVLRRYGNMSSSSVLYVL 330

Query: 292 AVAVKEGRVKKGDCLLLEAMGGGFTSGTVLL 322
           A    +GRVK+GD  LL A G GFT  + + 
Sbjct: 331 AYMEAKGRVKRGDRGLLIAFGPGFTCESAVW 361


>gnl|CDD|73238 cd00825, decarbox_cond_enzymes, decarboxylating condensing enzymes;
           Family of enzymes that catalyze the formation of a new
           carbon-carbon bond by a decarboxylating Claisen-like
           condensation reaction. Members are involved in the
           synthesis of fatty acids and polyketides, a diverse
           group of natural products. Both pathways are an
           iterative series of additions of small carbon units,
           usually acetate, to a nascent acyl group. There are 2
           classes of decarboxylating condensing enzymes, which can
           be distinguished by sequence similarity, type of active
           site residues and type of primer units (acetyl CoA or
           acyl carrier protein (ACP) linked units)..
          Length = 332

 Score = 94.4 bits (234), Expect = 4e-20
 Identities = 71/343 (20%), Positives = 117/343 (34%), Gaps = 99/343 (28%)

Query: 55  LGEAAARDALHHA----EMSVDDIDLIIVATSTPD---------------------QTFP 89
           LG  AA  A+  A    E   + I  ++V T                           FP
Sbjct: 14  LGFEAAERAIADAGLSREYQKNPIVGVVVGTGGGSPRFQVFGADAMRAVGPYVVTKAMFP 73

Query: 90  STAVNIQNRLGMKRGFAFDMQAVCSGFVYAVTTADSYIRSGVVRRVMVIGSDTFSRIVD- 148
             +  I   LG+  G A+D+ A C+G ++A++ A   +++G    V+  GS+  +  +D 
Sbjct: 74  GASGQIATPLGIH-GPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEELAAPMDC 132

Query: 149 -----------------WSDRSTCVLFGDGAGALILEGVEVKGSSMADT--GILSTYLCS 189
                            +   +   +FGDGAGAL++E +E   +  A     I+ T    
Sbjct: 133 EFDAMGALSTPEKASRTFDAAADGFVFGDGAGALVVEELEHALARGAHIYAEIVGTAATI 192

Query: 190 DGSYIDKLYVDGGPSTSRTVGCIRMEGKAVFKYAVEKAVELIEKVFDSTHLTIENIDWFV 249
           DG+                       G   F  + E      ++      LT+ +ID+ V
Sbjct: 193 DGA-----------------------GMGAFAPSAEGLARAAKEALAVAGLTVWDIDYLV 229

Query: 250 PHQANWRIINSIVDKMKIPFDK-----VIVTVDIHGNTSAASIPLALAVAVKEGRVK--- 301
            H     I +    K+           V  T  + GN S+A++ LA+  AV         
Sbjct: 230 AHGTGTPIGDVKELKLLRSEFGDKSPAVSATKAMTGNLSSAAVVLAVDEAVLMLEHGFIP 289

Query: 302 ----------------------KGDCLLLEAMGGGFTSGTVLL 322
                                 +    LL   G G T+ T++L
Sbjct: 290 PSIHIEELDEAGLNIVTETTPRELRTALLNGFGLGGTNATLVL 332


>gnl|CDD|33231 COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid
           metabolism].
          Length = 377

 Score = 93.8 bits (233), Expect = 6e-20
 Identities = 78/333 (23%), Positives = 126/333 (37%), Gaps = 49/333 (14%)

Query: 8   GIGLSLPRRVLSNSDLESIVDTSDGWIKRRVGISRRHIAGKDETTASLGEAAARDALHHA 67
           GIG  +PR  +   +L          IK+ +G+  + +   DE   ++   AAR+AL  A
Sbjct: 7   GIGAYIPRYRIKLEELARAWGVDPEKIKKGLGVEEKSVPPWDEDAVTMAVEAARNALKRA 66

Query: 68  EMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRG-FAFDMQAVCSGFVYAVTTADSY 126
           ++    I  +IV + +       TA  +   LG+     A D++  C     A+  A  +
Sbjct: 67  DIDPSKIGAVIVGSESGPDAVKPTATIVAEALGLNPSARAADVEFACYAGTAALQAAIGW 126

Query: 127 IRSGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALILEG-------VEVKGSSMAD 179
           + SG++   +VIG+DT       +   T    G GA A ++          E  GS   D
Sbjct: 127 VESGMISYGLVIGADTAQYAPGDALEYT---AGAGAVAFLIGKNPPIVAEFEGTGSYTTD 183

Query: 180 T-----GILSTYLCSDGSYIDKLYVDGGPSTSRTVGCIRMEGKAVFKYAVEKAVELIEKV 234
           T          Y   DG + +  Y                         VE A    +  
Sbjct: 184 TPDFWRPDGQPYPYVDGRFSEPAYFK----------------------HVENA---AKGY 218

Query: 235 FDSTHLTIENIDWFVPHQANWRIINSIVDKMKIPFDKV---IVTVDIHGNTSAASIPLAL 291
            + T L+ ++ D+ V HQ N +        +    ++V   +V     GNT   S+ L L
Sbjct: 219 MEKTGLSPDDFDYIVFHQPNGKFPKKAAKSLGFKEEQVKPGLVYPQRIGNTYTGSLLLGL 278

Query: 292 AVAVKEGRVKKGDCLLLEAMGGG----FTSGTV 320
           A  +   +   GD +LL + G G      S TV
Sbjct: 279 ASLLDNAK-LPGDRILLFSYGSGAGSEAFSITV 310


>gnl|CDD|73194 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that
           catalyze a (decarboxylating or non-decarboxylating)
           Claisen-like condensation reaction. Members are share
           strong structural similarity, and are involved in the
           synthesis and degradation of fatty acids, and the
           production of polyketides, a diverse group of natural
           products..
          Length = 254

 Score = 93.5 bits (232), Expect = 6e-20
 Identities = 60/282 (21%), Positives = 100/282 (35%), Gaps = 51/282 (18%)

Query: 55  LGEAAARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCS 114
           LG  AA  A+  A +S   I  +IV T+     F   A  +   LG+  G A+ +   C+
Sbjct: 10  LGFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGISGGPAYSVNQACA 69

Query: 115 GFVYAVTTADSYIRSGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVE--V 172
             + A+  A   +++G    V+  GS+ F             +FGDGA A ++E  E  +
Sbjct: 70  TGLTALALAVQQVQNGKADIVLAGGSEEF-------------VFGDGAAAAVVESEEHAL 116

Query: 173 KGSSMADTGILSTYLCSDGSYIDKLYVDGGPSTSRTVGCIRMEGKAVFKYAVEKAVELIE 232
           +  +     I+ST    DG+                          V   + E       
Sbjct: 117 RRGAHPQAEIVSTAATFDGAS------------------------MVPAVSGEGLARAAR 152

Query: 233 KVFDSTHLTIENIDWFVPHQANWRIIN-----SIVDKMKIPFDKVIVTVDIHGNTSAASI 287
           K  +   LT  +ID+   H     I +       +D   +    V  T+ + G+   A+ 
Sbjct: 153 KALEGAGLTPSDIDYVEAHGTGTPIGDAVELALGLDPDGVRSPAVSATLIMTGHPLGAAG 212

Query: 288 PLALAVAVKEGRVKKG-------DCLLLEAMGGGFTSGTVLL 322
              L   +     +           +LL   G G T+  V+L
Sbjct: 213 LAILDELLLMLEHEFIPPTPREPRTVLLLGFGLGGTNAAVVL 254


>gnl|CDD|33230 COG3424, BcsA, Predicted naringenin-chalcone synthase [Secondary
           metabolites biosynthesis, transport, and catabolism].
          Length = 356

 Score = 79.2 bits (195), Expect = 1e-15
 Identities = 78/363 (21%), Positives = 141/363 (38%), Gaps = 54/363 (14%)

Query: 4   STVRGIGLSLPRRVLSNSDLESIVDTSDGWIKRR---------VGISRRHIAGKD----- 49
           + +  +  +LP    + S++            R            I+RRH+         
Sbjct: 2   AVIASVATALPPYRYNQSEITDSFAELPFQEGREDIPRVLHANAQINRRHLVLPLDWYRE 61

Query: 50  ------------ETTASLGEAAARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQN 97
                       E    LG  A R AL  + +  +DID ++  TST   T PS    I  
Sbjct: 62  PHGFGEKNEIFIEEAVPLGVDALRRALDGSPLRPEDIDAVVTVTSTGLAT-PSLDARIVG 120

Query: 98  RLGM----KRGFAFDMQAVCSGFVYAVTTADSYIRSGVVRRVMVIGSDTFSRIVDWSDRS 153
            LG+    +R   + +   C+     +  A  Y R+     V+V+  +  S    ++D +
Sbjct: 121 ELGLSPDTRRVPVWGLG--CAAGAAGLARARDYCRAAPDANVLVVCVELCSLTYVFADDT 178

Query: 154 TC-----VLFGDGAGALILEGVEVKGSSMAD-TGILSTYLCSDGSYIDKLYVDGGPSTSR 207
                   LFGDGA A+++ G             IL ++          LY D       
Sbjct: 179 KSNLVGTALFGDGAAAVVVSGDRRAEGKRPLRPDILDSFS--------TLYPDSEDIMGW 230

Query: 208 TVG--CIRMEGKAVFKYAVEKAV-ELIEKVFDSTHLTIENIDWFVPHQANWRIINSIVDK 264
            VG   +++         +E  +   +     +  L+IE+I+ +V H    ++I++  + 
Sbjct: 231 DVGDQGLKVVLSRDLPNLIESYLAPNVTTFLATHGLSIEDIEAWVVHPGGPKVIDAYEES 290

Query: 265 MKIPFDKVIVTVDI---HGNTSAASIPLALAVAVKEGRVKKGDCLLLEAMGGGFTSGTVL 321
           + +  + + ++ D+   +GN S+A++   L   +++   K G   L+ AMG GF S  VL
Sbjct: 291 LGLSPEALELSWDVLREYGNMSSATVLFVLEDTLQKAP-KSGSRGLMFAMGPGFCSELVL 349

Query: 322 LRW 324
           L W
Sbjct: 350 LDW 352


>gnl|CDD|29416 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol
           carrier protein (SCP)-x isoform and related proteins;
           SCP-2  has multiple roles in intracellular lipid
           circulation and metabolism. The N-terminal presequence
           in the SCP-x isoform represents a peroxisomal
           3-ketacyl-Coa thiolase specific for branched-chain acyl
           CoAs, which is proteolytically cleaved from the sterol
           carrier protein..
          Length = 375

 Score = 58.0 bits (140), Expect = 4e-09
 Identities = 27/103 (26%), Positives = 45/103 (43%)

Query: 49  DETTASLGEAAARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFD 108
           D +   L   AAR AL  A +   DID ++V  +   +        I   LG+    A  
Sbjct: 13  DRSPLELAAEAARAALDDAGLEPADIDAVVVGNAAGGRFQSFPGALIAEYLGLLGKPATR 72

Query: 109 MQAVCSGFVYAVTTADSYIRSGVVRRVMVIGSDTFSRIVDWSD 151
           ++A  +    AV  A + I SG+   V+V+G++  S +    +
Sbjct: 73  VEAAGASGSAAVRAAAAAIASGLADVVLVVGAEKMSDVPTGDE 115


>gnl|CDD|29421 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP)
           synthase (KAS), type I and II. KASs are responsible for
           the elongation steps in fatty acid biosynthesis. KASIII
           catalyses the initial condensation and KAS I and II
           catalyze further elongation steps by Claisen
           condensation of malonyl-acyl carrier protein (ACP) with
           acyl-ACP..
          Length = 406

 Score = 34.0 bits (78), Expect = 0.051
 Identities = 36/170 (21%), Positives = 55/170 (32%), Gaps = 56/170 (32%)

Query: 53  ASLGEAAARDALHHAEMSVDDIDL----IIVATSTPDQTFPSTAVNIQNRLGMKRGFAFD 108
           A    AAA +AL  A +  +++D     +++ +          A       G +R   F 
Sbjct: 72  AQFALAAAEEALADAGLDPEELDPERIGVVIGSGIGGLATIEEAYRALLEKGPRRVSPFF 131

Query: 109 --------------MQAVCSGFVYAVTTADS-----------YIRSGVVRRVMVIGSDTF 143
                         ++    G  Y V+TA +            IR G    V+  G++  
Sbjct: 132 VPMALPNMAAGQVAIRLGLRGPNYTVSTACASGAHAIGDAARLIRLGRADVVIAGGAEAL 191

Query: 144 -------------------------SRIVDWSDRSTCVLFGDGAGALILE 168
                                    SR  D  DR   VL G+GAG L+LE
Sbjct: 192 ITPLTLAGFAALRALSTRNDDPEKASRPFD-KDRDGFVL-GEGAGVLVLE 239


>gnl|CDD|30532 COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism].
          Length = 392

 Score = 33.4 bits (76), Expect = 0.083
 Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 1/113 (0%)

Query: 34  IKRRVGISRRHIAGKDETTASLGEAAARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAV 93
             +    S   +A +    A +     R         VDD+ L  V  +       +   
Sbjct: 14  FGKFGDGSLAELAAEALGAALIDAGLERAPADVDAADVDDVILGCVLQAGEQGQNIARQA 73

Query: 94  NIQNRLGMKRGFAFDMQAVCSGFVYAVTTADSYIRSGVVRRVMVIGSDTFSRI 146
            +   L      A  +   C+  + AV  A   I SG    V+  G +  S  
Sbjct: 74  ALAAGLPGSVP-AVTVNRACASGLAAVRLAAQAIASGEADVVLAGGVEKMSDA 125


>gnl|CDD|38947 KOG3743, KOG3743, KOG3743, Recombination signal binding protein-J
           kappa(CBF1, Su(H), HS2NF5) [Transcription].
          Length = 622

 Score = 33.5 bits (76), Expect = 0.086
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 10/84 (11%)

Query: 235 FDSTHLTIENIDWFVPHQANWRIINSIVDKMKIPFDKVIVTVDIHGNTSAASIPLALAVA 294
           F +T    E   WF+   A W II++  DK + PF + +      G  ++  +P+ + V+
Sbjct: 447 FQATPCPTEANRWFLNDGAAWTIIST--DKAEYPFYEAM------GQVASPVMPVPVVVS 498

Query: 295 VKEGRVKKGDCLLLEAMGGGFTSG 318
           ++      GD  +LE  G  F   
Sbjct: 499 LE--LDGGGDVAMLELHGQNFVPN 520


>gnl|CDD|29411 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze
           the reversible thiolytic cleavage of 3-ketoacyl-CoA into
           acyl-CoA and acetyl-CoA, a 2-step reaction involving a
           covalent intermediate formed with a catalytic cysteine.
           They are found in prokaryotes and eukaryotes (cytosol,
           microbodies and mitochondria). There are 2 functional
           different classes: thiolase-I (3-ketoacyl-CoA thiolase)
           and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I
           can cleave longer fatty acid molecules and plays an
           important role in the beta-oxidative degradation of
           fatty acids. Thiolase-II has a high substrate
           specificity. Although it can cleave acetoacyl-CoA, its
           main function is the synthesis of acetoacyl-CoA from two
           molecules of acetyl-CoA, which gives it importance in
           several biosynthetic pathways..
          Length = 386

 Score = 33.2 bits (76), Expect = 0.11
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 48  KDETTASLGEAAARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKR---G 104
           KD +   LG A  +  L  A +  +++D +I+          + A       G+      
Sbjct: 18  KDVSADDLGAAVIKALLERAGLDPEEVDDVIMGNVLQAGEGQNPARQAALLAGLPESVPA 77

Query: 105 FAFDMQAVCSGFVYAVTTADSYIRSGVVRRVMVIGSDTFSR 145
              +    C   + AV  A   I +G    V+  G ++ SR
Sbjct: 78  TTVNRV--CGSGLQAVALAAQSIAAGEADVVVAGGVESMSR 116


>gnl|CDD|30652 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid
           metabolism / Secondary metabolites biosynthesis,
           transport, and catabolism].
          Length = 412

 Score = 30.3 bits (68), Expect = 0.81
 Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 28/107 (26%)

Query: 90  STAVNIQNRLGMKRGFAFDMQAVCSGFVYAVTTADSYIRSGVVRRVMVIGSD-------- 141
             A N+    G+K G  +     C+   +A+  A   IR G    V+  G++        
Sbjct: 140 LAAGNVAIVFGLK-GPNYTPVTACATGAHAIGDAVRLIRLGKADVVIAGGAEAAITPLGI 198

Query: 142 -----------------TFSRIVDWSDRSTCVLFGDGAGALILEGVE 171
                              SR  D  +R   V+ G+GAGAL+LE +E
Sbjct: 199 AGFEAMRALSTRNDDPEKASRPFD-KNRDGFVI-GEGAGALVLEELE 243



 Score = 27.2 bits (60), Expect = 6.7
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 57  EAAARDALHHAEMSVDDIDLIIV-ATSTP 84
             A R AL  A ++ +DID I    TSTP
Sbjct: 279 IRAMRAALADAGLTPEDIDYINAHGTSTP 307


>gnl|CDD|36014 KOG0795, KOG0795, KOG0795, Chorismate mutase [Amino acid transport
           and metabolism].
          Length = 262

 Score = 29.6 bits (66), Expect = 1.2
 Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 8/62 (12%)

Query: 212 IRMEGKAVFKYAVEKAVELIEKVFDSTHLTIEN-----IDWFVPHQANWRIINSIVDKMK 266
           IR E   +F             V++     +E      +++ V        +++ V + +
Sbjct: 25  IRQEDSIIFNLLERAQFPYNADVYEENAFGMEGFKGSLLEYMV---RETEKLHAKVRRYE 81

Query: 267 IP 268
            P
Sbjct: 82  SP 83


>gnl|CDD|35472 KOG0251, KOG0251, KOG0251, Clathrin assembly protein AP180 and
          related proteins, contain ENTH domain [Signal
          transduction mechanisms, Intracellular trafficking,
          secretion, and vesicular transport].
          Length = 491

 Score = 29.2 bits (65), Expect = 1.5
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 11/63 (17%)

Query: 48 KDETTASLG---------EAAARDALHHAEMSVDD--IDLIIVATSTPDQTFPSTAVNIQ 96
          KD T+             E A   A  H +M   D  +D I+ ATS+   + PS    + 
Sbjct: 7  KDRTSIGKASVASAGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSPASIPSCVHALS 66

Query: 97 NRL 99
           RL
Sbjct: 67 ERL 69


>gnl|CDD|146626 pfam04091, Sec15, Exocyst complex subunit Sec15-like. 
          Length = 280

 Score = 29.2 bits (66), Expect = 1.6
 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 185 TYLCSDGSYIDKLYVDGGPSTSRTVGCIRMEGKAVFKYAVEKAVELIEKVFDST---HLT 241
            Y       ++KL         R  G I +     FK A + A + I ++ +S     + 
Sbjct: 103 EYFEKACDELEKLLAQLRNIPQRIGGPISLAATKKFKSARKAAEKRIFELVNSKIDDFME 162

Query: 242 IENIDWFVP 250
           +   DW   
Sbjct: 163 LAEYDWTPT 171


>gnl|CDD|29415 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a
           subclass of decarboxylating condensing enzymes,
           including beta-ketoacyl [ACP] synthase, type I and II
           and polyketide synthases.They are characterized by the
           utlization of acyl carrier protein (ACP) thioesters as
           primer substrates, as well as the nature of their active
           site residues..
          Length = 407

 Score = 28.5 bits (63), Expect = 2.6
 Identities = 17/84 (20%), Positives = 24/84 (28%), Gaps = 3/84 (3%)

Query: 62  DALHHAEMSVDDIDLIIVATST-PDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSGFVYAV 120
             L              V+          +  VNI   L    G        C+  + A+
Sbjct: 112 RFLRRGGKLDARAVNPYVSPKWMLSPNTVAGWVNI--LLLSSHGPIKTPVGACATALEAL 169

Query: 121 TTADSYIRSGVVRRVMVIGSDTFS 144
             A   IRSG    V+V G +   
Sbjct: 170 DLAVEAIRSGKADIVVVGGVEDPL 193


>gnl|CDD|30621 COG0272, Lig, NAD-dependent DNA ligase (contains BRCT domain type
           II) [DNA replication, recombination, and repair].
          Length = 667

 Score = 28.2 bits (63), Expect = 3.2
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 229 ELIEKVFDSTHLTIE---NIDWFVPHQANWRIINSIVDKMKIPFDKVIVTVDIH--GNTS 283
            LI+ + D   LT E   +++ F    A   ++N+I    K P  + +  + I   G T+
Sbjct: 465 GLIKDIADLYTLTEEDLLSLEGFGEKSAE-NLLNAIEKSKKQPLARFLYALGIRHVGETT 523

Query: 284 AASI 287
           A S+
Sbjct: 524 AKSL 527


>gnl|CDD|34707 COG5104, PRP40, Splicing factor [RNA processing and modification].
          Length = 590

 Score = 27.8 bits (61), Expect = 3.8
 Identities = 10/68 (14%), Positives = 20/68 (29%)

Query: 61  RDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSGFVYAV 120
           ++A    +     ++L+    S+P   F    V+++N  G  R                 
Sbjct: 386 KNAYPLIKDDPRFLNLLGRTGSSPLDLFFDFIVDLENMYGFARRSYERETRTGQISPTDR 445

Query: 121 TTADSYIR 128
              D    
Sbjct: 446 RAVDEIFE 453


>gnl|CDD|34583 COG4977, COG4977, Transcriptional regulator containing an amidase
           domain and an AraC-type DNA-binding HTH domain
           [Transcription].
          Length = 328

 Score = 27.5 bits (61), Expect = 4.9
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 9/50 (18%)

Query: 34  IKRRVGISRRHIAG--KDETTASLGEA-------AARDALHHAEMSVDDI 74
           +  R G+SRR +    + E   S            AR  L    +S+ +I
Sbjct: 242 LADRAGLSRRQLERLFRAELGVSPARYYLRLRLERARRLLEQTRLSIAEI 291


>gnl|CDD|36416 KOG1202, KOG1202, KOG1202, Animal-type fatty acid synthase and
            related proteins [Lipid transport and metabolism].
          Length = 2376

 Score = 27.6 bits (61), Expect = 5.0
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 4/35 (11%)

Query: 284  AASIPLALAVA----VKEGRVKKGDCLLLEAMGGG 314
            A+++P+  + A    V  G++KKG+ +L+ A  GG
Sbjct: 1530 ASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGG 1564


>gnl|CDD|35327 KOG0104, KOG0104, KOG0104, Molecular chaperones GRP170/SIL1, HSP70
           superfamily [Posttranslational modification, protein
           turnover, chaperones].
          Length = 902

 Score = 26.9 bits (59), Expect = 7.2
 Identities = 8/19 (42%), Positives = 15/19 (78%)

Query: 62  DALHHAEMSVDDIDLIIVA 80
           DAL  A++S+D+I+ +I+ 
Sbjct: 353 DALKKAQLSLDEINQVILF 371


>gnl|CDD|36555 KOG1341, KOG1341, KOG1341, Na+/K+ transporter [Inorganic ion
           transport and metabolism].
          Length = 854

 Score = 26.9 bits (59), Expect = 7.6
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 1   MIRSTVRGIGLSLPRRVLSNSDLESIVDTSDGWIKRRVGIS 41
           +IR   RG+  +L R +L  SD   I +  D   KRR G  
Sbjct: 802 LIRGRHRGLPYALDRAILLPSDKNFIDEEED--YKRRHGKK 840


>gnl|CDD|48660 cd03564, ANTH_AP180_CALM, ANTH domain family; composed of adaptor
           protein 180 (AP180), clathrin assembly lymphoid myeloid
           leukemia protein (CALM) and similar proteins. A set of
           proteins previously designated as harboring an ENTH
           domain in fact contains a highly similar, yet unique
           module referred to as an AP180 N-terminal homology
           (ANTH) domain. AP180 and CALM play important roles in
           clathrin-mediated endocytosis. AP180 is a brain-specific
           clathrin-binding protein which stimulates clathrin
           assembly during the recycling of synaptic vesicles. The
           ANTH domain is structurally similar to the VHS domain
           and is composed of a superhelix of eight alpha helices.
           ANTH domains bind both inositol phospholipids and
           proteins, and contribute to the nucleation and formation
           of clathrin coats on membranes. ANTH-bearing proteins
           have recently been shown to function with adaptor
           protein-1 and GGA adaptors at the trans-Golgi network,
           which suggests that the ANTH domain is a universal
           component of the machinery for clathrin-mediated
           membrane budding..
          Length = 117

 Score = 26.8 bits (59), Expect = 8.7
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 57  EAAARDALHHAEMSVDD--IDLIIVATSTPDQTFPSTAVNIQNRLGMK 102
           E A + A  H E    D  +  II  TS+   + PS A  +  RL  +
Sbjct: 2   EKAVKKATSHDEAPPKDKHVRKIIAGTSSSPASIPSFASALSRRLLDR 49


>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family.  This
           group contains members identified as related to
           zinc-dependent alcohol dehydrogenase and other members
           of the MDR family. The medium chain
           dehydrogenases/reductase (MDR)/zinc-dependent alcohol
           dehydrogenase-like family, which contains the
           zinc-dependent alcohol dehydrogenase (ADH-Zn) and
           related proteins, is a diverse group of proteins related
           to the first identified member, class I mammalian ADH.
           MDRs display a broad range of activities and are
           distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P)-binding Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.  The MDR group includes
           various activities, including the founding alcohol
           dehydrogenase (ADH), quinone reductase, sorbitol
           dehydrogenase, formaldehyde dehydrogenase, butanediol
           DH, ketose reductase, cinnamyl reductase, and numerous
           others. The zinc-dependent alcohol dehydrogenases (ADHs)
           catalyze the NAD(P)(H)-dependent interconversion of
           alcohols to aldehydes or ketones. Active site zinc has a
           catalytic role, while structural zinc aids in stability.
            ADH-like proteins typically form dimers (typically
           higher plants, mammals) or tetramers (yeast, bacteria),
           and generally have 2 tightly bound zinc atoms per
           subunit. The active site zinc is coordinated by a
           histidine, two cysteines, and a water molecule. The
           second zinc seems to play a structural role, affects
           subunit interactions, and is typically coordinated by 4
           cysteines.
          Length = 337

 Score = 26.8 bits (60), Expect = 9.6
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 263 DKMKIPFDKVIVTVDIHGNTSAASIPLALAV-AVKEGRVKKGDCLLLEAMGGG 314
           + + +P D ++V   +  + +A   PLA+   AV+   V  GD +L+  +G G
Sbjct: 119 EYIVVPADALLVPEGLSLDQAALVEPLAIGAHAVRRAGVTAGDTVLV--VGAG 169


>gnl|CDD|29420 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty
           acids into a large variety of different products, called
           polyketides, by successive decarboxylating Claisen
           condensations. PKSs can be divided into 2 groups,
           modular type I PKSs consisting of one or more large
           multifunctional proteins and iterative type II PKSs,
           complexes of several monofunctional subunits..
          Length = 421

 Score = 26.7 bits (59), Expect = 9.8
 Identities = 34/147 (23%), Positives = 52/147 (35%), Gaps = 25/147 (17%)

Query: 39  GISRRHIAGKDETTASLGEAAARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNR 98
           G S   +AG    T     A++ D L       D+ID    A +    +    A  I   
Sbjct: 103 GYSPESLAGSR--TGVFVGASSSDYLELLARDPDEID----AYAATGTSRAFLANRISYF 156

Query: 99  LGMKRGFAFDMQAVCSGFVYAVTTADSYIRSGVVRRVMVIGSD---------TFSRIVDW 149
             + RG +  +   CS  + A+  A   +RSG     +V G +          FS+    
Sbjct: 157 FDL-RGPSLTVDTACSSSLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGML 215

Query: 150 SDRSTCVLF---------GDGAGALIL 167
           S    C  F         G+G G ++L
Sbjct: 216 SPDGRCRPFDADADGYVRGEGVGVVVL 242


>gnl|CDD|31762 COG1574, COG1574, Predicted metal-dependent hydrolase with the
           TIM-barrel fold [General function prediction only].
          Length = 535

 Score = 26.4 bits (58), Expect = 9.9
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 265 MKIPFDKVIVTVDIHGNTSAASIPLALAVAVKEGRVK 301
             +  D ++    I+    A   P A AVA+K+GR+ 
Sbjct: 1   AAMAADLILHNGRIYTMDEAR--PTAEAVAIKDGRIV 35


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.321    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0751    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,777,819
Number of extensions: 198366
Number of successful extensions: 518
Number of sequences better than 10.0: 1
Number of HSP's gapped: 491
Number of HSP's successfully gapped: 43
Length of query: 324
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 230
Effective length of database: 4,232,491
Effective search space: 973472930
Effective search space used: 973472930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)