RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780497|ref|YP_003064910.1| 3-oxoacyl-(acyl carrier
protein) synthase III [Candidatus Liberibacter asiaticus str. psy62]
(324 letters)
>gnl|CDD|181792 PRK09352, PRK09352, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 319
Score = 483 bits (1246), Expect = e-137
Identities = 180/325 (55%), Positives = 230/325 (70%), Gaps = 8/325 (2%)
Query: 1 MIRSTVRGIGLSLPRRVLSNSDLESIVDTSDGWIKRRVGISRRHIAGKDETTASLGEAAA 60
M+ + + G G LP RV++N DLE +VDTSD WI R GI R IA DETT+ L AA
Sbjct: 1 MMYAKILGTGSYLPERVVTNDDLEKMVDTSDEWIVTRTGIKERRIAAPDETTSDLATEAA 60
Query: 61 RDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSGFVYAV 120
+ AL A + +DIDLIIVAT+TPD FPSTA +Q RLG K AFD+ A CSGFVYA+
Sbjct: 61 KKALEAAGIDPEDIDLIIVATTTPDYAFPSTACLVQARLGAKNAAAFDLSAACSGFVYAL 120
Query: 121 TTADSYIRSGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVEVKGSSMADT 180
+TAD +IRSG + V+VIG++ SRIVDW+DRSTCVLFGDGAGA++L E +
Sbjct: 121 STADQFIRSGAYKNVLVIGAEKLSRIVDWTDRSTCVLFGDGAGAVVLGASE-------EP 173
Query: 181 GILSTYLCSDGSYIDKLYVDGGPSTSR-TVGCIRMEGKAVFKYAVEKAVELIEKVFDSTH 239
GILST+L SDGSY D LY+ GG S + G +RMEG+ VFK+AV + ++ + ++
Sbjct: 174 GILSTHLGSDGSYGDLLYLPGGGSRGPASPGYLRMEGREVFKFAVRELAKVAREALEAAG 233
Query: 240 LTIENIDWFVPHQANWRIINSIVDKMKIPFDKVIVTVDIHGNTSAASIPLALAVAVKEGR 299
LT E+IDW VPHQAN RII++ K+ +P +KV+VTVD +GNTSAASIPLAL AV++GR
Sbjct: 234 LTPEDIDWLVPHQANLRIIDATAKKLGLPMEKVVVTVDKYGNTSAASIPLALDEAVRDGR 293
Query: 300 VKKGDCLLLEAMGGGFTSGTVLLRW 324
+K+GD +LLE GGG T G L+RW
Sbjct: 294 IKRGDLVLLEGFGGGLTWGAALVRW 318
>gnl|CDD|183809 PRK12879, PRK12879, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 325
Score = 389 bits (1002), Expect = e-109
Identities = 149/330 (45%), Positives = 212/330 (64%), Gaps = 13/330 (3%)
Query: 1 MIRSTVRGIGLSLPRRVLSNSDLESIVDTSDGWIKRRVGISRRHIAGKDETTASLGEAAA 60
M + + GIG +P RVL+N DLE+ +DTSD WI +R GI R IA +E T+ L AA
Sbjct: 2 MSYARITGIGTYVPPRVLTNDDLETFIDTSDEWIVQRTGIKERRIAHVEEYTSDLAIKAA 61
Query: 61 RDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSGFVYAV 120
AL A + +DIDLIIVAT+TPD FPSTA +Q RLG+ AFD+ A C+GF+Y +
Sbjct: 62 ERALARAGLDAEDIDLIIVATTTPDYLFPSTASQVQARLGIPNAAAFDINAACAGFLYGL 121
Query: 121 TTADSYIRSGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVEVKGSSMADT 180
TA+ I SG+ ++V+VIG++ S++ D++DR+TC+LFGDGAGA++LE E +
Sbjct: 122 ETANGLITSGLYKKVLVIGAERLSKVTDYTDRTTCILFGDGAGAVVLEATENEP------ 175
Query: 181 GILSTYLCSDGSYIDKLYVDGGPSTSR------TVGCIRMEGKAVFKYAVEKAVELIEKV 234
G + L +DG D LY G T+ G I G+ VFK+AV + +V
Sbjct: 176 GFIDYVLGTDGDGGDILYRT-GLGTTMDRDALSGDGYIVQNGREVFKWAVRTMPKGARQV 234
Query: 235 FDSTHLTIENIDWFVPHQANWRIINSIVDKMKIPFDKVIVTVDIHGNTSAASIPLALAVA 294
+ LT ++IDW +PHQAN RII S+ +K+ IP +K +V+V+ +GNTSAA+IPLAL +A
Sbjct: 235 LEKAGLTKDDIDWVIPHQANLRIIESLCEKLGIPMEKTLVSVEYYGNTSAATIPLALDLA 294
Query: 295 VKEGRVKKGDCLLLEAMGGGFTSGTVLLRW 324
+++G++K GD LLL G G T +L++W
Sbjct: 295 LEQGKIKPGDTLLLYGFGAGLTWAALLVKW 324
>gnl|CDD|162020 TIGR00747, fabH, 3-oxoacyl-(acyl-carrier-protein) synthase III.
Active site residues include Cys112, His244 and Asn274
of E. coli FabH. Cys-112 is the site of acyl group
attachment.
Length = 318
Score = 364 bits (936), Expect = e-101
Identities = 159/323 (49%), Positives = 218/323 (67%), Gaps = 7/323 (2%)
Query: 3 RSTVRGIGLSLPRRVLSNSDLESIVDTSDGWIKRRVGISRRHIAGKDETTASLGEAAARD 62
+ + G G LP +VL+N+DLE +VDTSD WI R GI R IA DET++++G AA+
Sbjct: 2 YAGILGTGSYLPEKVLTNADLEKMVDTSDEWIVTRTGIKERRIAADDETSSTMGFEAAKR 61
Query: 63 ALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSGFVYAVTT 122
A+ +A +S DDIDLIIVAT+TPD FPS A +Q LG+K AFD+ A C+GF+YA++
Sbjct: 62 AIENAGISKDDIDLIIVATTTPDHAFPSAACMVQAYLGIKGIPAFDLSAACAGFIYALSV 121
Query: 123 ADSYIRSGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVEVKGSSMADTGI 182
A YI SG + V+V+G++ S +DW+DR TCVLFGDGAGA++L G S GI
Sbjct: 122 AKQYIESGKYKTVLVVGAEKLSSTLDWTDRGTCVLFGDGAGAVVL------GESEDPGGI 175
Query: 183 LSTYLCSDGSYIDKLYVD-GGPSTSRTVGCIRMEGKAVFKYAVEKAVELIEKVFDSTHLT 241
+ST+L +DG+ + LY+ GG TS I MEG VFK+AV K +++E+ ++ L
Sbjct: 176 ISTHLGADGTQGEALYLPAGGRPTSGPSPFITMEGNEVFKHAVRKMGDVVEETLEANGLD 235
Query: 242 IENIDWFVPHQANWRIINSIVDKMKIPFDKVIVTVDIHGNTSAASIPLALAVAVKEGRVK 301
E+IDWFVPHQAN RII ++ ++++ +V+ TV +GNTSAASIPLAL ++ GR+K
Sbjct: 236 PEDIDWFVPHQANLRIIEALAKRLELDMSQVVKTVHKYGNTSAASIPLALDELLRTGRIK 295
Query: 302 KGDCLLLEAMGGGFTSGTVLLRW 324
GD LLL A GGG T G L+R+
Sbjct: 296 PGDLLLLVAFGGGLTWGAALVRF 318
>gnl|CDD|177960 PLN02326, PLN02326, 3-oxoacyl-[acyl-carrier-protein] synthase III.
Length = 379
Score = 300 bits (769), Expect = 4e-82
Identities = 141/334 (42%), Positives = 195/334 (58%), Gaps = 23/334 (6%)
Query: 8 GIGLSLPRRVLSNSDLESIVDTSDGWIKRRVGISRRHIAGKDETTASLGEAAARDALHHA 67
G G ++P+ +++N DL +VDTSD WI R GI R + DET SL AA+ AL A
Sbjct: 52 GCGSAVPKLLITNDDLSKLVDTSDEWIATRTGIRNRRVLSGDETLTSLAVEAAKKALEMA 111
Query: 68 EMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSGFVYAVTTADSYI 127
+ +D+DL+++ TS+PD F S A +Q LG AFD+ A CSGFV + TA +I
Sbjct: 112 GVDPEDVDLVLLCTSSPDDLFGS-APQVQAALGCTNALAFDLTAACSGFVLGLVTAARFI 170
Query: 128 RSGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVEVKGSSMADTGILSTYL 187
R G + V+VIG+D SR VDW+DR TC+LFGDGAGA++L+ + G+L +
Sbjct: 171 RGGGYKNVLVIGADALSRYVDWTDRGTCILFGDGAGAVVLQA-----CDDDEDGLLGFDM 225
Query: 188 CSDGSYIDKLY-----------------VDGGPSTSRTVGCIRMEGKAVFKYAVEKAVEL 230
SDG+ L+ V P + CI+M GK VFK+AV ++
Sbjct: 226 HSDGNGHKHLHATFKGEDDDSSGGNTNGVGDFPPKKASYSCIQMNGKEVFKFAVRCVPQV 285
Query: 231 IEKVFDSTHLTIENIDWFVPHQANWRIINSIVDKMKIPFDKVIVTVDIHGNTSAASIPLA 290
IE LT E+IDW + HQAN RII+++ ++ IP +KVI + +GNTSAASIPLA
Sbjct: 286 IESALQKAGLTAESIDWLLLHQANQRIIDAVAQRLGIPPEKVISNLANYGNTSAASIPLA 345
Query: 291 LAVAVKEGRVKKGDCLLLEAMGGGFTSGTVLLRW 324
L AV+ G+VKKGD + G G T G+ ++RW
Sbjct: 346 LDEAVRSGKVKKGDVIATAGFGAGLTWGSAIVRW 379
>gnl|CDD|180328 PRK05963, PRK05963, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 326
Score = 235 bits (601), Expect = 1e-62
Identities = 118/332 (35%), Positives = 193/332 (58%), Gaps = 14/332 (4%)
Query: 1 MIRSTVRGIGLSLPRRVLSNSDLESIVDTSDGWIKRRVGISRRHIAGKDETTASLGEAAA 60
+ S + G G ++P R + N+++E+ + GWI+RR GI R A DET + L +A
Sbjct: 1 VCSSRIAGFGHAVPDRRVENAEIEAQLGLETGWIERRTGIRCRRWAAPDETLSDLAASAG 60
Query: 61 RDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSGFVYAV 120
AL A + DI L ++ATSTPD P +A + +RLG++ A D+ C+GF+YA+
Sbjct: 61 DMALSDAGIERSDIALTLLATSTPDHLLPPSAPLLAHRLGLQNSGAIDLAGACAGFLYAL 120
Query: 121 TTADSYIRSGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVEVKGSSMADT 180
AD ++R+ + V+V+ ++ SR ++ ++R++ VLF D AGA++L S+ A++
Sbjct: 121 VLADGFVRA-QGKPVLVVAANILSRRINMAERASAVLFADAAGAVVL-----APSAKANS 174
Query: 181 GILSTYLCSDGSYIDKLYV-DGGPSTSRTVGCI----RM---EGKAVFKYAVEKAVELIE 232
G+L + L SDGS+ D + + GG + M +G+AVF AV +
Sbjct: 175 GVLGSQLISDGSHYDLIKIPAGGSARPFAPERDASEFLMTMQDGRAVFTEAVRMMSGASQ 234
Query: 233 KVFDSTHLTIENIDWFVPHQANWRIINSIVDKMKIPFDKVIVTVDIHGNTSAASIPLALA 292
V S +T ++ID F PHQAN RI++ + + + IP K T++ +GN+SAA+IPL+L+
Sbjct: 235 NVLASAAMTPQDIDRFFPHQANARIVDKVCETIGIPRAKAASTLETYGNSSAATIPLSLS 294
Query: 293 VAVKEGRVKKGDCLLLEAMGGGFTSGTVLLRW 324
+A E +++G+ LL A G G T G V++R
Sbjct: 295 LANLEQPLREGERLLFAAAGAGMTGGAVVMRV 326
>gnl|CDD|180881 PRK07204, PRK07204, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 329
Score = 211 bits (538), Expect = 2e-55
Identities = 107/334 (32%), Positives = 185/334 (55%), Gaps = 15/334 (4%)
Query: 1 MIRS-TVRGIGLSLPRRVLSNSDLESIVDTSDGWIKRRVGISRRHIAGKDETTASLGEAA 59
M R +++GIG LP+R + + +L+ +D +GW+ ++ G+ RH ET++ +G A
Sbjct: 1 MKRYISIKGIGTYLPKRKVDSLELDKKLDLPEGWVLKKSGVKTRHFV-DGETSSYMGAEA 59
Query: 60 ARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGM-KRGFA-FDMQAVCSGFV 117
A+ A+ A++++DDID II A+ T Q P TA IQ +LG+ G FD+ + C F+
Sbjct: 60 AKKAVEDAKLTLDDIDCIICASGTIQQAIPCTASLIQEQLGLQHSGIPCFDINSTCLSFI 119
Query: 118 YAVTTADSYIRSGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVEVKGSSM 177
A+ T I G +RV++I S+ S ++W +C+LFGDGA A+++ + SS
Sbjct: 120 TALDTISYAIECGRYKRVLIISSEISSVGLNWGQNESCILFGDGAAAVVIT--KGDHSSR 177
Query: 178 ADTGILSTYLCSDGSYIDKLYVDG------GPSTSRTVGCI-RMEGKAVFKYAVEKAVEL 230
+ TY S G+++ ++ G S R + M G+A+FK + + ++
Sbjct: 178 ILASHMETY--SSGAHLSEIRGGGTMIHPREYSEERKEDFLFDMNGRAIFKLSSKYLMKF 235
Query: 231 IEKVFDSTHLTIENIDWFVPHQANWRIINSIVDKMKIPFDKVIVTVDIHGNTSAASIPLA 290
I+K+ T+ +ID VPHQA+ + I K+ + ++ + + HGN AASIP+A
Sbjct: 236 IDKLLMDAGYTLADIDLIVPHQASGPAMRLIRKKLGVDEERFVTIFEDHGNMIAASIPVA 295
Query: 291 LAVAVKEGRVKKGDCLLLEAMGGGFTSGTVLLRW 324
L A+K+ +V++G+ +LL G + G +LL +
Sbjct: 296 LFEAIKQKKVQRGNKILLLGTSAGLSIGGILLEY 329
>gnl|CDD|181012 PRK07515, PRK07515, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 372
Score = 132 bits (335), Expect = 1e-31
Identities = 96/333 (28%), Positives = 160/333 (48%), Gaps = 38/333 (11%)
Query: 22 DLESIVDTSDGWIKRRVGISRRHIAGK------------------DE--TTASLGEAAAR 61
++E++ +S +I++ GI R++ K DE A +G AAAR
Sbjct: 45 EVEALQPSSSEFIEKASGIKSRYVMDKEGILDPDRMRPRIPERSNDELSIQAEMGVAAAR 104
Query: 62 DALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSGFVYAVT 121
AL A + +DID +IVA S + +P+ A+ IQ LG+ GFAFDM CS + +
Sbjct: 105 QALARAGRTAEDIDAVIVACSNMQRAYPAMAIEIQQALGI-EGFAFDMNVACSSATFGIQ 163
Query: 122 TADSYIRSGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVEVKGSSMADTG 181
TA + IRSG RRV+V+ + S +++ DR + +FGD A A+I+E + S+
Sbjct: 164 TAANAIRSGSARRVLVVNPEICSGHLNFRDRDSHFIFGDVATAVIVERADTATSAGGFE- 222
Query: 182 ILSTYLCSDGS--------YIDKLYVDGGPSTSRTVGCIRMEGKAVFKYAVEKAVELIEK 233
IL T L + S ++++ +G + + EG+ VFK E I +
Sbjct: 223 ILGTRLFTQFSNNIRNNFGFLNRADPEGIGARDKL---FVQEGRKVFKEVCPMVAEHIVE 279
Query: 234 VFDSTHLTIENIDWFVPHQANWRIINSIVDKM---KIPFDKVIVTVDIHGNTSAASIPLA 290
LT ++ F HQAN + I K+ ++ V +D + NTS+A +A
Sbjct: 280 HLAENGLTPADVKRFWLHQANINMNQLIGKKVLGRDATPEEAPVILDEYANTSSAGSIIA 339
Query: 291 LAVAVKEGRVKKGDCLLLEAMGGGFTSGTVLLR 323
+ + GD ++ + G G++ G+V++R
Sbjct: 340 FHKHSDD--LAAGDLGVICSFGAGYSIGSVIVR 370
>gnl|CDD|117118 pfam08541, ACP_syn_III_C, 3-Oxoacyl-[acyl-carrier-protein (ACP)]
synthase III C terminal. This domain is found on
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
EC:2.3.1.41, the enzyme responsible for initiating the
chain of reactions of the fatty acid synthase in plants
and bacteria.
Length = 90
Score = 127 bits (321), Expect = 5e-30
Identities = 48/90 (53%), Positives = 66/90 (73%)
Query: 235 FDSTHLTIENIDWFVPHQANWRIINSIVDKMKIPFDKVIVTVDIHGNTSAASIPLALAVA 294
+ LT ++IDWFVPHQAN RII+++ ++ +P +KV+V +D +GNTSAASIPLAL A
Sbjct: 1 LEKAGLTPDDIDWFVPHQANLRIIDAVAKRLGLPPEKVVVNLDRYGNTSAASIPLALDEA 60
Query: 295 VKEGRVKKGDCLLLEAMGGGFTSGTVLLRW 324
V+EG++K GD +LL G G T G +LRW
Sbjct: 61 VEEGKLKPGDLVLLVGFGAGLTWGAAVLRW 90
>gnl|CDD|171793 PRK12880, PRK12880, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 353
Score = 125 bits (316), Expect = 1e-29
Identities = 87/343 (25%), Positives = 164/343 (47%), Gaps = 36/343 (10%)
Query: 3 RSTVRGIGLSLPRRVLSNSD-LESIVDTSDGWIKRR---VGISRRHIAGKDETTASLGEA 58
++ + GI +S+P + D LES+ +KR +G++ R+I ++ + LG+
Sbjct: 7 KAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKKVIGLNTRYICDENTCVSDLGKH 66
Query: 59 AARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMK-RGFAFDMQAVCSGFV 117
AA L + + +D +IV T +PD PSTA + L + + AFD+ C+G++
Sbjct: 67 AANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACYLHQLLNLSSKTIAFDLGQACAGYL 126
Query: 118 YAVTTADSYIRSGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVEVKGSSM 177
Y + A S I+SG+ ++++I DT S+ + + + +FGDG A ++E + +
Sbjct: 127 YGLFVAHSLIQSGLG-KILLICGDTLSKFIHPKNMNLAPIFGDGVSATLIEKTD-FNEAF 184
Query: 178 ADTGILSTYLCSDGSYIDKLYVDGGP-----------------STSRTVGCIRMEGKAVF 220
+ G SDG Y DKL + G R + + M+G +F
Sbjct: 185 FELG-------SDGKYFDKLIIPKGAMRIPKADIFNDDSLMQTEEFRQLENLYMDGANIF 237
Query: 221 KYAVEKAVELIEKVFDSTHLTIENIDWFVPHQANWRIINSIVDKMKIPFDKVI-VTVDIH 279
A+E + +++ + + + ++I + + HQ+N +++ I +++K+ DKV ++ +
Sbjct: 238 NMALECEPKSFKEILEFSKVDEKDIAFHLFHQSNAYLVDCIKEELKLNDDKVPNFIMEKY 297
Query: 280 GNTSAASIPLALAVAVKEGRVKKGDCLLLEAMGGGFTSGTVLL 322
N SA S+P L K L A G G + G+ +L
Sbjct: 298 ANLSACSLPALLCELDTPKEFKA----SLSAFGAGLSWGSAVL 336
>gnl|CDD|117122 pfam08545, ACP_syn_III, 3-Oxoacyl-[acyl-carrier-protein (ACP)]
synthase III. This domain is found on
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
EC:2.3.1.41, the enzyme responsible for initiating the
chain of reactions of the fatty acid synthase in plants
and bacteria.
Length = 80
Score = 118 bits (299), Expect = 1e-27
Identities = 49/85 (57%), Positives = 64/85 (75%), Gaps = 5/85 (5%)
Query: 107 FDMQAVCSGFVYAVTTADSYIRSGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALI 166
FD+ A CSGFVYA++TA + IRSG + V+V+G++T SRI+DW+DRST VLFGDGAGA++
Sbjct: 1 FDINAACSGFVYALSTAAALIRSGRAKNVLVVGAETLSRILDWTDRSTAVLFGDGAGAVV 60
Query: 167 LEGVEVKGSSMADTGILSTYLCSDG 191
LE E G+ ILS+ L SDG
Sbjct: 61 LEATEEGGA-----RILSSVLGSDG 80
>gnl|CDD|180722 PRK06840, PRK06840, hypothetical protein; Validated.
Length = 339
Score = 117 bits (295), Expect = 4e-27
Identities = 78/337 (23%), Positives = 164/337 (48%), Gaps = 26/337 (7%)
Query: 6 VRGIGLSLPRRVLSNSDLESIVDTSDGWIKRRVGISRRHIAGKDETTASLGEAAARDALH 65
+ G G+ LP+ V++ ++ + + + GI + + G ++ T+ + AAA+ AL
Sbjct: 7 IVGTGVYLPKDVMTAEEIAEKTGIPEEVVIEKFGIYEKPVPGPEDHTSDMAIAAAKPALK 66
Query: 66 HAEMSVDDIDLIIVATSTPDQTFP--STAVNIQNRLGMKRGFAFDMQAVCSGFVYAVTTA 123
A + ID++I S + +P S+A IQ+ +G K +AFD+ AVC+ F A+ A
Sbjct: 67 QAGVDPAAIDVVIYIGS-EHKDYPVWSSAPKIQHEIGAKNAWAFDIMAVCASFPIALKVA 125
Query: 124 DSYIRS-GVVRRVMVIGSDTFSRIVDWSDRSTCVLF--GDGAGALILEGVEVKGSSMADT 180
+ S + V+++G S +VD+ + T +F G A +L+ K +
Sbjct: 126 KDLLYSDPSIENVLLVGGYRNSDLVDYDNPRTRFMFNFAAGGSAALLK----KDA--GKN 179
Query: 181 GILSTYLCSDGSYIDKLYVDGG----PSTSRTVG----CIRMEGKAVFKYAVEKA----- 227
IL + + +DGS+ + + V G P++ TV + + K +++
Sbjct: 180 RILGSAIITDGSFSEDVRVPAGGTKQPASPETVENRQHYLDVIDPESMKERLDEVSIPNF 239
Query: 228 VELIEKVFDSTHLTIENIDWFVPHQANWRIINSIVDKMKIPFDKVIVTVDIHGNTSAASI 287
+++I + + T ++ID+ ++++ + + ++ I +D +G+
Sbjct: 240 LKVIREALRKSGYTPKDIDYLAILHMKRSAHIALLEGLGLTEEQAIY-LDEYGHLGQLDQ 298
Query: 288 PLALAVAVKEGRVKKGDCLLLEAMGGGFTSGTVLLRW 324
L+L +A+++G++K GD ++L + G G+T ++RW
Sbjct: 299 ILSLHLALEQGKLKDGDLVVLVSAGTGYTWAATVIRW 335
>gnl|CDD|181732 PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 338
Score = 100 bits (251), Expect = 5e-22
Identities = 84/348 (24%), Positives = 138/348 (39%), Gaps = 50/348 (14%)
Query: 8 GIGLSLPRRVLSNSDLES-IVDTSD------GWIKRRVGISRRHIAGKDETTASLGEAAA 60
+ L V+++S++E + + G ++ GI R + + AA
Sbjct: 10 SLAYELAPVVVTSSEIEERLAPLYERLRLPPGQLEALTGIRERRWWPEGTQLSDGAIAAG 69
Query: 61 RDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGM-KRGFAFDMQAVCSGFVYA 119
R AL A + DI L+I + D P+TA + + LG+ K FD+ C GF+
Sbjct: 70 RKALAEAGIDPSDIGLLINTSVCRDYLEPATACRVHHNLGLPKSCANFDVSNACLGFLNG 129
Query: 120 VTTADSYIRSGVVRRVMVIGSDTFSRIVDW------SDRSTCVLF---------GDGAGA 164
+ A + I G + +V+ ++ IV+ + +T F G GA A
Sbjct: 130 MLDAANMIELGQIDYALVVSGESAREIVEATIDRLLAPETTREDFAQSFATLTLGSGAAA 189
Query: 165 LILEGVE--------VKGSSMADTGILSTYLCSDGSYIDKLYVDGGPSTSRTVGCIRMEG 216
+L + G + A T LC GG RT +
Sbjct: 190 AVLTRGSLHPRGHRLLGGVTRAATE--HHELCQ-----------GGRDGMRT------DA 230
Query: 217 KAVFKYAVEKAVELIEKVFDSTHLTIENIDWFVPHQANWRIINSIVDKMKIPFDKVIVTV 276
+ K VE AV+ E +E +D + HQ +I+ + I +KV T
Sbjct: 231 VGLLKEGVELAVDTWEAFLAQLGWAVEQVDRVICHQVGAAHTRAILKALGIDPEKVFTTF 290
Query: 277 DIHGNTSAASIPLALAVAVKEGRVKKGDCLLLEAMGGGFTSGTVLLRW 324
GN AS+P+ LA+A +EG +K GD + L +G G + ++W
Sbjct: 291 PTLGNMGPASLPITLAMAAEEGFLKPGDRVALLGIGSGLNCSMLEVKW 338
>gnl|CDD|180710 PRK06816, PRK06816, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 378
Score = 97.3 bits (243), Expect = 5e-21
Identities = 93/377 (24%), Positives = 156/377 (41%), Gaps = 70/377 (18%)
Query: 8 GIGLSLPRRVLSNSDLESIVDTSDGW---IKRRV----GISRRHIAGKDE-----TTASL 55
G LP +SN ++E+ + +G +R + GI RH A E + A +
Sbjct: 7 STGAFLPGEPVSNDEMEAYLGLINGKPSRARRIILRNNGIKTRHYALDPEGRPTHSNAQM 66
Query: 56 GEAAARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSG 115
A RD L A S+ DI+L+ TS PDQ P A + LG VC+
Sbjct: 67 AAEAIRDLLDDAGFSLGDIELLACGTSQPDQLMPGHASMVHGELGAPPIEVVSSAGVCAA 126
Query: 116 FVYAVTTADSYIRSGVVRRVMVIGSDTFSRI------------VDWSDRSTCVLF----- 158
+ A+ A +++G R + S+ SR + + + + F
Sbjct: 127 GMMALKYAYLSVKAGESRNAVATASELASRWFRASRFEAEEEKLAELEENPEIAFEKDFL 186
Query: 159 ----GDGAGALILE------GVEVK-----GSSMADTGILSTYLCS----DGSYIDKLYV 199
DGAGA++LE G+ ++ S A + Y + DGS K +
Sbjct: 187 RWMLSDGAGAVLLENKPRPDGLSLRIDWIDLRSYAGELPVCMYAGAEKNEDGS--LKGWS 244
Query: 200 DGGPSTSRTVGC------IRMEGKAVFKYAVEKAVELIEKVFDSTHLTIENIDWFVPHQA 253
D P + +R+ + + Y ++ +EL++K L ++ID+F+PH +
Sbjct: 245 DYPPEEAEAASALSLKQDVRLLNENIVVYTIKPLLELVDKRN----LDPDDIDYFLPHYS 300
Query: 254 NWRIINSIVDKMK-----IPFDKVIVTVDIHGNTSAASIPLALAVAVKEGRVKKGDCLLL 308
+ IV+ + IP +K + GNT +ASI + L + GR+K G +L
Sbjct: 301 SEYFREKIVELLAKAGFMIPEEKWFTNLATVGNTGSASIYIMLDELLNSGRLKPGQKILC 360
Query: 309 ---EAMGGGFTSGTVLL 322
E+ G F++ +LL
Sbjct: 361 FVPES--GRFSTAFMLL 375
>gnl|CDD|179804 PRK04262, PRK04262, hypothetical protein; Provisional.
Length = 347
Score = 65.3 bits (160), Expect = 2e-11
Identities = 78/299 (26%), Positives = 123/299 (41%), Gaps = 51/299 (17%)
Query: 34 IKRRVGISRRHIAGKDETTASLGEAAARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAV 93
IKR +G+ + + G DE TA++ AAR+AL A + +I + V + + TA
Sbjct: 33 IKRGLGVEEKSVPGPDEDTATIAVEAARNALKRAGIDPKEIGAVYVGSESHPYAVKPTAT 92
Query: 94 NIQNRLGMKRG-FAFDMQAVCSGFVYAVTTADSYIRSGVVRRVMVIGSDTF-SRIVDWSD 151
+ LG A D++ C A+ A ++SG+++ + IG+DT D +
Sbjct: 93 IVAEALGATPDLTAADLEFACKAGTAALQAAMGLVKSGMIKYALAIGADTAQGAPGDALE 152
Query: 152 RSTCVLFGDGAGALILEGVEVKGSSMADTGILSTYLCSDGSYIDKLYVDGGPSTSRTVGC 211
+ G A I+ G I +TY SY T+ T
Sbjct: 153 YTA----AAGGAAFII------GKEEVIAEIEATY-----SY-----------TTDTPDF 186
Query: 212 IRMEG-------------KAVFKYAVEKAVELIEKVFDSTHLTIENIDWFVPHQANWRII 258
R EG A FK+ + A L+EK L + D+ V HQ N +
Sbjct: 187 WRREGEPYPRHGGRFTGEPAYFKHIISAAKGLMEK----LGLKPSDYDYAVFHQPNGKFP 242
Query: 259 NSIVDKMKIPFDKV---IVTVDIHGNTSAASIPLALAVAVKEGRVKKGDCLLLEAMGGG 314
+ + ++V ++T I GNT + S L LA AV + K GD +L+ + G G
Sbjct: 243 LRVAKMLGFTKEQVKPGLLTPYI-GNTYSGSALLGLA-AVLD-VAKPGDRILVVSFGSG 298
>gnl|CDD|129831 TIGR00748, HMG_CoA_syn_Arc, hydroxymethylglutaryl-CoA synthase,
putative. Thus, although there is no experimental
evidence supporting this name, the bioinformatics-based
conclusion appears to be sound.
Length = 345
Score = 60.3 bits (146), Expect = 6e-10
Identities = 76/321 (23%), Positives = 127/321 (39%), Gaps = 37/321 (11%)
Query: 8 GIGLSLPRRVLSNSDLESIVDTSDGWIKRRVGISRRHIAGKDETTASLGEAAARDALHHA 67
G G +P + ++ + I + + + + G DE TA++G AAR+AL A
Sbjct: 6 GYGAYIPMYRIKVEEIARVWGKDPESISNGLPVEEKAVPGLDEDTATIGVEAARNALKRA 65
Query: 68 EMSVDDIDLIIVAT-STPDQTFPSTAVNIQNRLGMKRGFAFDMQAVCSGFVYAVTTADSY 126
++ DI + V + S P P+ + + A D++ C +
Sbjct: 66 KIDPKDIGAVYVGSESHPYAVKPTATIVAEAIGATPDLTAADLEFACKAGTAGIQACMGL 125
Query: 127 IRSGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVEVKGSSMADTGILSTY 186
+ SG+++ + IG+DT GA LE G + G +T
Sbjct: 126 VASGMIKYGLAIGADT----------------AQGAPGDALEYTAGAGGAAYIIGEKNTV 169
Query: 187 LCSDGSYIDKLYVDGGPSTSRTVGCI------RMEGK-AVFKYAVEKAVELIEKVFDSTH 239
+G+Y Y P R G R G+ A F + V A L+EK
Sbjct: 170 AYFEGTYS---YTTDTPDFWRREGEPYPRHGGRFTGEPAYFHHVVTAAKGLMEK----LG 222
Query: 240 LTIENIDWFVPHQANWRIINSIVDKMKIPFDKV---IVTVDIHGNTSAASIPLALAVAVK 296
LT E+ D+ V HQ N + + P ++V ++T I GNT + + P+ L+ +
Sbjct: 223 LTPEDFDYAVFHQPNGKFYLVAARMLGFPKEQVKPGLLTPRI-GNTYSGATPVGLSAVLD 281
Query: 297 EGRVKKGDCLLLEAMGGGFTS 317
+ GD +L + G G S
Sbjct: 282 I--AEPGDRILAVSYGSGAGS 300
>gnl|CDD|130894 TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylglutaryl CoA synthase,
prokaryotic clade. This clade of
hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found
in a limited spectrum of mostly gram-positive bacteria
which make isopentenyl pyrophosphate (IPP) via the
mevalonate pathway. This pathway is found primarily in
eukaryotes and archaea, but the bacterial homologs are
distinct, having aparrently diverged after being
laterally transferred from an early eukaryote. HMG-CoA
synthase is the first step in the pathway and joins
acetyl-CoA with acetoacetyl-CoA with the release of one
molecule of CoA. The Borellia sequence may have resulted
from a separate lateral transfer event.
Length = 379
Score = 46.7 bits (111), Expect = 7e-06
Identities = 70/343 (20%), Positives = 123/343 (35%), Gaps = 62/343 (18%)
Query: 9 IGLSLPRRVLSNSDLESIVDTSDGWIKRRVGISRRHIAGKDETTASLGEAAARDALHHAE 68
I P+ L + L +G + + DE ++ +AA+ L +
Sbjct: 6 ISFFTPQNYLDMTALAEARGVDPEKFHIGIGQKKMAVPPIDEDIVTMAASAAKPILDRND 65
Query: 69 MSVDDIDLIIVAT-STPDQTFPSTAVNIQNRLGMKRGFA--FDMQAVCSGFVYAVTTADS 125
ID++I T S DQ+ + AV + LG++ F F+++ C G A+ A
Sbjct: 66 KQ--KIDMVIFGTESGIDQS-KAAAVYVHGLLGLQ-PFCRSFELKQACYGATAALQMAKG 121
Query: 126 YIRSGVVRRVMVIGSDTFSRIVDWSDRSTC-VLFGDGAGALILEGVEVKGSSMADTGILS 184
++ R+V+VI SD I + S G GA A+++ + S
Sbjct: 122 HVALSPDRKVLVIASD----IAKYGLESPGEPTQGAGAVAMLVS----ADPKLLAINEDS 173
Query: 185 TYLCSD------GSYIDKLYVDGGPSTSRTVGCIRMEGKAVFKYAVEKAVELIEKVFDS- 237
D +Y VDG +Y+ E+ + E ++
Sbjct: 174 VLYTDDIMDFWRPNYSTTALVDG-------------------QYSNEQYLNAFENAWNDY 214
Query: 238 ---THLTIENIDWFVPHQ--------ANWRIINSIV----DKMKIPFDKVIVTVDIHGNT 282
T L++ + F H A I+ + ++ + + I+ GN
Sbjct: 215 AKRTGLSLADFAAFCFHVPFTKMGLKALRHILKKNYEDEDESVQNAYLESIIYNREVGNL 274
Query: 283 SAASIPLALAVAVKEG-RVKKGDCLLLEAMGGG----FTSGTV 320
S+ L LA ++ GD + L + G G F SGT+
Sbjct: 275 YTGSLYLGLASLLENAFEDTTGDKIGLFSYGSGAVAEFFSGTL 317
>gnl|CDD|181013 PRK07516, PRK07516, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 42.6 bits (101), Expect = 2e-04
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 49 DETTASLGEAAARDALHHAEMSVDDIDLIIVATS----TPDQTFPSTAVNIQNRLGMKRG 104
ET SL AR+AL HA ++ D+D I + +P Q FP++ V +Q ++
Sbjct: 19 AETLESLIVRVAREALAHAGIAAGDVDGIFLGHFNAGFSP-QDFPASLV-LQADPALRFK 76
Query: 105 FAFDMQAVCSGFVYAVTTADSYIRSGVVRRVMVIG 139
A ++ C+ AV A I +G R V+V+G
Sbjct: 77 PATRVENACATGSAAVYAALDAIEAGRARIVLVVG 111
>gnl|CDD|183606 PRK12578, PRK12578, acetyl-CoA acetyltransferase; Provisional.
Length = 385
Score = 37.9 bits (88), Expect = 0.003
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 49 DETTASLGEAAARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGFAFD 108
D + L + ++AL+ A +S DI+L++V ++ A + G+
Sbjct: 18 DVSVQELAWESIKEALNDAGVSQTDIELVVVGSTAYRGIELYPAPIVAEYSGLTGKVPLR 77
Query: 109 MQAVCSGFVYAVTTADSYIRSGVVRRVMVIGSDTFSRIVDWSDRSTCVLFGDGAG 163
++A+C+ + A TA + + SG+V + +G D + + D ST + G G
Sbjct: 78 VEAMCATGLAASLTAYTAVASGLVDMAIAVGVDKMTEV----DTSTSLAIGGRGG 128
>gnl|CDD|178520 PLN02932, PLN02932, 3-ketoacyl-CoA synthase.
Length = 478
Score = 36.5 bits (84), Expect = 0.008
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 248 FVPHQANWRIINSIVDKMKI-PFDKVIVTVDIH--GNTSAASIPLALAVAVKEGRVKKGD 304
F H +I+ + + + P D + +H GNTS++SI LA +GR+KKGD
Sbjct: 374 FCIHAGGRALIDEMEKNLHLTPLDVEASRMTLHRFGNTSSSSIWYELAYTEAKGRMKKGD 433
Query: 305 CLLLEAMGGGF 315
+ A+G GF
Sbjct: 434 RIWQIALGSGF 444
>gnl|CDD|165836 PLN02192, PLN02192, 3-ketoacyl-CoA synthase.
Length = 511
Score = 34.9 bits (80), Expect = 0.025
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 280 GNTSAASIPLALAVAVKEGRVKKGDCLLLEAMGGGFTSGTVLLR 323
GNTS++S+ LA + +GR+KKGD A G GF + + +
Sbjct: 437 GNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWK 480
>gnl|CDD|177808 PLN00415, PLN00415, 3-ketoacyl-CoA synthase.
Length = 466
Score = 33.5 bits (76), Expect = 0.079
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 274 VTVDIHGNTSAASIPLALAVAVKEGRVKKGDCLLLEAMGGGFTSGTVLLR 323
+T+ GNTS++S+ LA + RVK+GD + A G GF +++ R
Sbjct: 389 MTLHRFGNTSSSSLWYELAYVEAKCRVKRGDRVWQLAFGSGFKCNSIVWR 438
>gnl|CDD|181311 PRK08235, PRK08235, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 33.1 bits (76), Expect = 0.095
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 48 KDETTASLGEAAARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKR-GFA 106
KD LG A ++AL A +S +D++ +I+ T I +R + G
Sbjct: 22 KDVKATELGGIAIKEALERANVSAEDVEEVIMGT-----VLQGGQGQIPSRQAARAAGIP 76
Query: 107 FDMQA-----VCSGFVYAVTTADSYIRSG 130
+++Q VC+ + AVT AD IR+G
Sbjct: 77 WEVQTETVNKVCASGLRAVTLADQIIRAG 105
>gnl|CDD|166495 PLN02854, PLN02854, 3-ketoacyl-CoA synthase.
Length = 521
Score = 32.2 bits (73), Expect = 0.16
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 280 GNTSAASIPLALAVAVKEGRVKKGDCLLLEAMGGGF 315
GNTS++S+ LA +GRV GD + A G GF
Sbjct: 449 GNTSSSSLWYELAYTEAKGRVSAGDRVWQIAFGSGF 484
>gnl|CDD|178713 PLN03169, PLN03169, chalcone synthase family protein; Provisional.
Length = 391
Score = 32.0 bits (73), Expect = 0.23
Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 28/148 (18%)
Query: 34 IKRRVGISRRHIAGKDETTASLGEAAARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAV 93
IK+R+ I+ +E + A+ + V DI + V S+ + P +
Sbjct: 95 IKQRLDIA-------NEAVTQMAVEASLACIKEWGRPVSDITHL-VYVSSSEARLPGGDL 146
Query: 94 NIQNRLGMKRGFAFDMQAV------CSGFVYAVTTADSYIRSGVVRRVMVIGSDTFSRIV 147
+ +LG+ D+Q V CSG V + A + RV++ S+T I+
Sbjct: 147 YLAKQLGLSP----DVQRVMLYFLGCSGGVAGLRVAKDIAENNPGSRVLLTTSET--TIL 200
Query: 148 DWS--------DRSTCVLFGDGAGALIL 167
+ D LFGDGA A+I+
Sbjct: 201 GFRPPSPDRPYDLVGAALFGDGAAAVII 228
>gnl|CDD|180373 PRK06059, PRK06059, lipid-transfer protein; Provisional.
Length = 399
Score = 30.9 bits (70), Expect = 0.43
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 4/102 (3%)
Query: 44 HIAGK-DETTASLGEAAARDALHHAEMSVDDIDLIIVATSTPDQTFPS--TAVNIQNRLG 100
H GK G AAR AL A + D+ L +V T +P LG
Sbjct: 14 HPWGKWGRDFVEYGVVAARAALADAGLDWRDVQL-VVGADTIRNGYPGFVAGATFAQALG 72
Query: 101 MKRGFAFDMQAVCSGFVYAVTTADSYIRSGVVRRVMVIGSDT 142
A C+ A+ +A + I +G+ +V+G+DT
Sbjct: 73 WNGAPVSSSYAACASGSQALQSARAQILAGLCDVALVVGADT 114
>gnl|CDD|181265 PRK08170, PRK08170, acetyl-CoA acetyltransferase; Provisional.
Length = 426
Score = 30.4 bits (69), Expect = 0.61
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 51 TTASLGEAAARDALHHAEMSVDDIDLIIV--ATSTPDQTFPSTAVNIQNRLGM-KRGFAF 107
+ + L AA R L+ + DD+D +I+ A +PD+ + V + RLG ++ A+
Sbjct: 26 SASDLAVAAGRALLNRQPFAPDDLDEVILGCAMPSPDEANIARVVAL--RLGCGEKVPAW 83
Query: 108 DMQAVCSGFVYAVTTADSYIRSGVVRRVMVIGSDTFSR 145
+Q C+ + A+ +A + I G V+ G + S
Sbjct: 84 TVQRNCASGMQALDSAAANIALGRADLVLAGGVEAMSH 121
>gnl|CDD|166018 PLN02377, PLN02377, 3-ketoacyl-CoA synthase.
Length = 502
Score = 30.4 bits (68), Expect = 0.68
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 274 VTVDIHGNTSAASIPLALAVAVKEGRVKKGDCLLLEAMGGGF 315
+T+ GNTS++SI LA +GR++KG+ + A G GF
Sbjct: 427 MTLHRFGNTSSSSIWYELAYIEAKGRMRKGNRVWQIAFGSGF 468
>gnl|CDD|180425 PRK06147, PRK06147, 3-oxoacyl-(acyl carrier protein) synthase;
Validated.
Length = 348
Score = 29.6 bits (67), Expect = 1.0
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 12/67 (17%)
Query: 113 CSGFVYAVTTADSYIRSGVVRRVMVIGSDTFSR--IVDW---------SDRSTCVLFGDG 161
SG V A+ A I +G RV+V G D+ + S S + G+
Sbjct: 134 VSGAV-ALAQARRLIAAGGCPRVLVAGVDSLLTGPTLAHYEARDRLLTSQNSNGFIPGEA 192
Query: 162 AGALILE 168
A A++L
Sbjct: 193 AAAVLLG 199
>gnl|CDD|181146 PRK07851, PRK07851, acetyl-CoA acetyltransferase; Provisional.
Length = 406
Score = 29.6 bits (67), Expect = 1.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 59 AARDALHHAEMSVDDIDLIIVATSTPDQTFPS 90
A++ AL A MS+DDIDL+ + + Q PS
Sbjct: 308 ASKQALARAGMSIDDIDLVEINEAFAAQVLPS 339
>gnl|CDD|162610 TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltransferases. This
model represents a large family of enzymes which
catalyze the thiolysis of a linear fatty acid CoA (or
acetoacetyl-CoA) using a second CoA molecule to produce
acetyl-CoA and a CoA-ester product two carbons shorter
(or, alternatively, the condensation of two molecules of
acetyl-CoA to produce acetoacetyl-CoA and CoA). This
enzyme is also known as "thiolase", "3-ketoacyl-CoA
thiolase", "beta-ketothiolase" and "Fatty oxidation
complex beta subunit". When catalyzing the degradative
reaction on fatty acids the corresponding EC number is
2.3.1.16. The condensation reaction corresponds to
2.3.1.9. Note that the enzymes which catalyze the
condensation are generally not involved in fatty acid
biosynthesis, which is carried out by a decarboxylating
condensation of acetyl and malonyl esters of acyl
carrier proteins. Rather, this activity may produce
acetoacetyl-CoA for pathways such as IPP biosynthesis in
the absence of sufficient fatty acid oxidation.
Length = 386
Score = 29.1 bits (66), Expect = 1.5
Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 9/111 (8%)
Query: 48 KDETTASLGEAAARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMKRGF-- 105
KD + LG A ++ L + + ID +I NI + + G
Sbjct: 17 KDVSAEDLGAAVIKELLERNPLDPELIDDVIFGNVLQ----AGEQQNIARQAALLAGLPE 72
Query: 106 ---AFDMQAVCSGFVYAVTTADSYIRSGVVRRVMVIGSDTFSRIVDWSDRS 153
A+ + C+ + AV A IR+G V+ G ++ SR+ RS
Sbjct: 73 SVPAYTVNRQCASGLQAVILAAQLIRAGEADVVVAGGVESMSRVPYSLPRS 123
>gnl|CDD|180379 PRK06065, PRK06065, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 29.0 bits (65), Expect = 1.5
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 50 ETTASLGEAAARDALHHAEMSVDDIDLIIVATSTPD 85
ET L AA AL A + + DID +++ S PD
Sbjct: 27 ETPQELAWEAASKALDEAGLELKDIDCVVIG-SAPD 61
>gnl|CDD|140227 PTZ00200, PTZ00200, cysteine proteinase; Provisional.
Length = 448
Score = 28.9 bits (65), Expect = 1.9
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 204 STSRTVGCIRMEGKAVFKYAVEKAVELIEKVFDSTHLTIENIDW 247
++ R + ++KA E V D + +T E +DW
Sbjct: 197 TSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDW 240
>gnl|CDD|181315 PRK08242, PRK08242, acetyl-CoA acetyltransferase; Validated.
Length = 402
Score = 27.9 bits (63), Expect = 3.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 59 AARDALHHAEMSVDDIDL 76
A R AL A ++VDDIDL
Sbjct: 305 ATRKALAKAGLTVDDIDL 322
>gnl|CDD|180387 PRK06078, PRK06078, pyrimidine-nucleoside phosphorylase; Reviewed.
Length = 434
Score = 27.7 bits (62), Expect = 3.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 226 KAVELIEKVFDSTHLTIENIDWFV 249
+ V+LI+K D LT E I++F+
Sbjct: 2 RMVDLIQKKRDGKELTTEEINFFI 25
>gnl|CDD|162418 TIGR01553, formate-DH-alph, formate dehydrogenase, alpha subunit,
proteobacterial-type. This model is well-defined, with
a large, unpopulated trusted/noise gap.
Length = 1009
Score = 28.0 bits (62), Expect = 3.6
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 25 SIVDTSDGWIKRRVGIS-----RRHIA--GKDETTASLGEAAARDALHHAEMSVDDIDLI 77
S +D + W+ ++ S H A T ASL + R A+ + + + + DLI
Sbjct: 166 SAMDNEECWLYQKWLRSLGLFYIEHQARIUHSPTVASLAPSFGRGAMTNNWVDIKNSDLI 225
Query: 78 IVATSTPDQTFP 89
+V P + P
Sbjct: 226 LVMGGNPAENHP 237
>gnl|CDD|161737 TIGR00163, PS_decarb, phosphatidylserine decarboxylase precursor.
Phosphatidylserine decarboxylase is synthesized as a
single chain precursor. Generation of the pyruvoyl
active site from a Ser is coupled to cleavage of a
Gly-Ser bond between the larger (beta) and smaller
(alpha chains). It is an integral membrane protein. A
closely related family, possibly also active as
phosphatidylserine decarboxylase, falls under model
TIGR00164.
Length = 238
Score = 27.5 bits (61), Expect = 4.6
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 10/62 (16%)
Query: 261 IVDKMKIPFDKVIVTVDIHGNTSAASIPLALAVAVKEGRVKKGDCLLLEAMGGGFTSGTV 320
V ++ FD I T H T + V + +G E MG TV
Sbjct: 158 NVGSIRTNFDGNIQTNPRHEFTQTWTYNALGPVKLLKG----------EEMGYFELGSTV 207
Query: 321 LL 322
+L
Sbjct: 208 IL 209
>gnl|CDD|118864 pfam10343, DUF2419, Protein of unknown function (DUF2419). This is
a family of conserved proteins found from plants to
humans. The function is not known. A few members are
annotated as being cobyrinic acid a,c-diamide synthetase
but this could not be confirmed.
Length = 282
Score = 27.6 bits (62), Expect = 4.9
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 214 MEGKAVFKYAVEKAVELIEKVFDSTHLTIENIDWFV 249
+E +A +AVE I K + ID+F+
Sbjct: 223 VEIRACSIWAVELIRREINKRHPKPKVNAILIDFFL 258
>gnl|CDD|150236 pfam09491, RE_AlwI, AlwI restriction endonuclease. This family
includes the AlwI (recognizes GGATC), Bsp6I (recognizes
GC^NGC), BstNBI (recognizes GASTC), PleI(recognizes
GAGTC) and MlyI (recognizes GAGTC) restriction
endonucleases.
Length = 429
Score = 27.4 bits (61), Expect = 5.9
Identities = 9/39 (23%), Positives = 22/39 (56%)
Query: 228 VELIEKVFDSTHLTIENIDWFVPHQANWRIINSIVDKMK 266
++L+ ++ ++L+ E I FV + I+ IV+++
Sbjct: 65 LKLLNELELESYLSKEEIALFVLLITDDNDIDEIVNRIL 103
>gnl|CDD|163158 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II.
FabB sequences should fall well below the noise cutoff
of this model.
Length = 407
Score = 27.1 bits (61), Expect = 5.9
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 44 HIAGKDETTASLGEAAAR---DALHHAEMSVDDIDLIIV-ATSTP 84
HI GE AAR AL A ++ +D+D I TSTP
Sbjct: 266 HITAPAPE----GEGAARAMRAALKDAGINPEDVDYINAHGTSTP 306
>gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 27.1 bits (61), Expect = 6.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 30 SDGWIKRRVGISRRHIAGK-----DETTASLGEAA 59
S G KRRV ++R ++ + DE TA+L AA
Sbjct: 129 SAGQ-KRRVALARLLVSNRPIWILDEPTAALDAAA 162
>gnl|CDD|162960 TIGR02644, Y_phosphoryl, pyrimidine-nucleoside phosphorylase. In
general, members of this protein family are designated
pyrimidine-nucleoside phosphorylase, enzyme family EC
2.4.2.2, as in Bacillus subtilis, and more narrowly as
the enzyme family EC 2.4.2.4, thymidine phosphorylase
(alternate name: pyrimidine phosphorylase), as in
Escherichia coli. The set of proteins encompassed by
this model is designated subfamily rather than equivalog
for this reason; the protein name from this model should
be used when TIGR02643 does not score above trusted
cutoff.
Length = 405
Score = 26.8 bits (60), Expect = 7.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 227 AVELIEKVFDSTHLTIENIDWFV 249
AV++I K D L+ E I++F+
Sbjct: 1 AVDIIRKKRDGKKLSDEEINFFI 23
>gnl|CDD|162988 TIGR02727, MTHFS_bact, 5,10-methenyltetrahydrofolate synthetase.
This enzyme, 5,10-methenyltetrahydrofolate synthetase,
is also called 5-formyltetrahydrofolate cycloligase.
Function of bacterial proteins in this family was
inferred originally from the known activity of
eukaryotic homologs. Recently, activity was shown
explicitly for the member from Mycoplasma pneumonia.
Members of this family from alpha- and
gamma-proteobacteria, designated ygfA, are often found
in an operon with 6S structural RNA, and show a similar
pattern of high expression during stationary phase. The
function may be to deplete folate to slow 1-carbon
biosynthetic metabolism.
Length = 181
Score = 26.9 bits (60), Expect = 7.3
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 11/40 (27%)
Query: 70 SVDDIDLIIVATSTPDQTFPSTAVNIQ-NRLGMKRGFAFD 108
D+IDLIIV P A + + RLG G+ +D
Sbjct: 112 DPDEIDLIIV---------PGVAFDRRGYRLGYGGGY-YD 141
>gnl|CDD|180594 PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 425
Score = 26.9 bits (60), Expect = 7.4
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 58 AAARDALHHAEMSVDDIDLIIV-ATSTPD 85
A R AL A ++ + ID I TSTP+
Sbjct: 293 GAIRAALADAGLTPEQIDYINAHGTSTPE 321
>gnl|CDD|180659 PRK06690, PRK06690, acetyl-CoA acetyltransferase; Provisional.
Length = 361
Score = 26.7 bits (59), Expect = 8.0
Identities = 10/47 (21%), Positives = 29/47 (61%)
Query: 228 VELIEKVFDSTHLTIENIDWFVPHQANWRIINSIVDKMKIPFDKVIV 274
+ + K+ + ++ +E+ID+F ++A + + +++IP++K+ V
Sbjct: 261 IFAVNKLLNEMNMKVEDIDYFEINEAFASKVVACAKELQIPYEKLNV 307
>gnl|CDD|128412 smart00101, 14_3_3, 14-3-3 homologues. 14-3-3 homologues mediates
signal transduction by binding to
phosphoserine-containing proteins. They are involved in
growth factor signalling and also interact with MEK
kinases.
Length = 244
Score = 26.8 bits (59), Expect = 8.1
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 11/51 (21%)
Query: 225 EKAVELIEKV---FDSTHLTIENIDWFV--------PHQANWRIINSIVDK 264
E+ VE +EKV DS LT+E + +A+WRII+SI K
Sbjct: 18 EEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQK 68
>gnl|CDD|183910 PRK13238, tnaA, tryptophanase/L-cysteine desulfhydrase,
PLP-dependent; Provisional.
Length = 460
Score = 26.7 bits (60), Expect = 9.1
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 11 LSLPRRVLSNSDLESIVDTSDGWIKRR 37
L++PRRV + S ++ + + +K
Sbjct: 408 LAIPRRVYTQSHMDYVAEALK-AVKEN 433
>gnl|CDD|180261 PRK05790, PRK05790, putative acyltransferase; Provisional.
Length = 393
Score = 26.7 bits (60), Expect = 9.6
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 17/92 (18%)
Query: 48 KDETTASLGEAAARDALHHAEMSVDDIDLII---VATSTPDQTFPSTAVNIQNRLGMKRG 104
KD + LG + AL A + + +D +I V + Q N + +K G
Sbjct: 22 KDVSAVELGAIVIKAALERAGVPPEQVDEVIMGQVLQAGAGQ-------NPARQAALKAG 74
Query: 105 F-----AFDMQAVC-SGFVYAVTTADSYIRSG 130
A + VC SG AV A IR+G
Sbjct: 75 LPVEVPALTINKVCGSGL-KAVALAAQAIRAG 105
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.136 0.397
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,267,658
Number of extensions: 340832
Number of successful extensions: 903
Number of sequences better than 10.0: 1
Number of HSP's gapped: 863
Number of HSP's successfully gapped: 65
Length of query: 324
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 230
Effective length of database: 3,963,321
Effective search space: 911563830
Effective search space used: 911563830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)