HHsearch alignment for GI: 254780498 and conserved domain: pfam04166
>pfam04166 PdxA Pyridoxal phosphate biosynthetic protein PdxA. In Escherichia coli the coenzyme pyridoxal 5'-phosphate is synthesized de novo by a pathway that is thought to involve the condensation of 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose, catalysed by the enzymes PdxA and PdxJ, to form either pyridoxine (vitamin B6) or pyridoxine 5'-phosphate.
Probab=98.22 E-value=0.0002 Score=47.81 Aligned_cols=238 Identities=18% Similarity=0.153 Sum_probs=137.6
Q ss_pred CCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCC----------CCCCCHHHHHHHHCCC--------CHHHHHHHHH
Q ss_conf 991799978989999998626975155799778520----------1778306799971376--------4279999999
Q gi|254780498|r 41 PRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVS----------IAMDERPADALRRGRN--------VSSMWRAIEA 102 (364)
Q Consensus 41 ~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~v----------I~mde~P~~AlR~kK~--------~SSm~~a~~l 102 (364)
T Consensus 7 ~~C~PVViGd~~lL~~~ak~lgl~~-~i~~I~~~~~~~~~~~~i~~v~~~~~~~-~~~~Gk~s~~~G~~~~~~l~~Av~~ 84 (299)
T pfam04166 7 EKCTPVVIADEALLERAAKLLGLPL-DLRDIEFVEPAQEEPAGLLVIDPLPLKV-PVVAGEVSAASGAYVLETLARAVAL 84 (299)
T ss_pred CCCCEEEEECHHHHHHHHHHCCCCC-EEEEECCHHHCCCCCCCEEEEECCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 2897999989999999999829995-3898087554422568768970565677-7788985889999999999999999
Q ss_pred HHCCCCEEEEEEC-CHHHHHHHH------HHHCCCCCCCCCCCHHHCCCCCCCC-EEEE-------ECCCCCCCCHHHHH
Q ss_conf 8549953999706-426788888------7532255676322001105588984-5998-------61327778989999
Q gi|254780498|r 103 VKKNQAASVVTAG-NTGALIAMA------RLCLSRISGVDRPSLAAFWPTVKGK-CIIL-------DVGATIGSTVSHMV 167 (364)
Q Consensus 103 vk~g~aDa~VSaG-nTGA~la~a------~~~lg~i~Gv~RPala~~~Pt~~g~-~vll-------D~GAN~d~~~~~L~ 167 (364)
T Consensus 85 ~~~g~~dalVT~PInK~~i~~ag~~f~GHTE~La~~~~~~~~~Mml~--~-~~LrV~lvTtHipLk~V~~~--It~~~I~ 159 (299)
T pfam04166 85 ALDGEFDAIVTGPINKGALKDAGIPYSGHTEFLAERTGTHSVVMMLA--T-GDLRVALVTTHIPLKDVPDA--ITFELVE 159 (299)
T ss_pred HHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEE--C-CCCEEEEECCCCCHHHHHHH--HHHHHHH
T ss_conf 97599889997973889998679998986899987636897379996--4-97489995346569999987--5199999
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEE----CCCCCCCCCHH---HHHHHHHHHHCCCCCCCEECCCCHHHCCC----CCCC
Q ss_conf 9999999999985689996589984----04555556579---99999997402457132002345545324----5683
Q gi|254780498|r 168 QLSILGSFFARSVAGINCPSIGLLN----VGTEEIKGNDV---LQESARLLRGECCGAFKYKGFIEANDIAK----GFVD 236 (364)
Q Consensus 168 qfA~mGs~yak~~~~~~~PrVgLLN----iG~E~~KG~~~---~kea~~LL~~~~~~~~nF~GniEg~~i~~----g~~D 236 (364)
T Consensus 160 ~~i~~~~~~l~~~~gi~~PrIaV~gLNPHaGE~G~~G~EE~~iI~Pai~~~~~---~gi~v~GP~paDt~F~~~~~~~~D 236 (299)
T pfam04166 160 DFLRLLHKALREKFGIAEPRIAVAGLNPHAGEGGVLGREEIEEIIPALEQARA---EGIDLLGPLPADTAFRPVLLGRYD 236 (299)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH---CCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 99999999999964998980899944887665555641447888999999885---499758897943776541105789
Q ss_pred EEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCEE-------
Q ss_conf 899755-127889999888899999999986322208899999989999999972696870874674216148-------
Q gi|254780498|r 237 VIVTEG-FSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLV------- 308 (364)
Q Consensus 237 VvV~DG-FtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g~v------- 308 (364)
T Consensus 237 ~v~amYHDQglip~K~~~f----------------------------------------~~~vn~t~GLp~irtS~dHGt 276 (299)
T pfam04166 237 AVLAMYHDQGLIPLKYLGF----------------------------------------DRGVNVTLGLPIIRTSVDHGT 276 (299)
T ss_pred EEEEECCCCCCHHHHHCCC----------------------------------------CCCEEEECCCCEEEECCCCCC
T ss_conf 9998052442076653356----------------------------------------873799448992377899870
Q ss_pred ---EEECCCCCHHHHHHHHHHHH
Q ss_conf ---98388998689999999999
Q gi|254780498|r 309 ---VKGHGSSDAKSIFNVLGIAH 328 (364)
Q Consensus 309 ---ik~HG~s~~~a~~~ai~~a~ 328 (364)
T Consensus 277 a~diagk~~A~~~s~~~Ai~~Aa 299 (299)
T pfam04166 277 AFDIAGKGKADPGSLIAALKLAA 299 (299)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHC
T ss_conf 56660789899699999999759