Query gi|254780498|ref|YP_003064911.1| putative glycerol-3-phosphate acyltransferase PlsX [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 364
No_of_seqs 153 out of 1524
Neff 5.7
Searched_HMMs 33803
Date Wed Jun 1 18:44:23 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780498.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1vi1_A Fatty acid/phospholipi 100.0 0 0 549.0 34.9 339 12-356 2-341 (345)
2 >1u7n_A Fatty acid/phospholipi 100.0 0 0 351.4 18.6 172 10-347 1-172 (173)
3 >1u7n_A Fatty acid/phospholipi 100.0 4.3E-42 0 285.0 10.7 106 134-241 1-109 (109)
4 >1yco_A Branched-chain phospho 99.9 2.3E-26 6.9E-31 185.7 11.4 124 129-257 1-142 (152)
5 >1td9_A Phosphate acetyltransf 99.2 2.2E-10 6.4E-15 85.0 9.9 117 133-252 1-135 (152)
6 >1r5j_A Putative phosphotransa 99.2 2.1E-10 6.3E-15 85.0 9.4 117 133-252 1-137 (154)
7 >2af4_C Phosphate acetyltransf 99.1 9.4E-10 2.8E-14 81.0 9.8 105 146-252 20-142 (159)
8 >1r5j_A Putative phosphotransa 99.1 1.3E-09 3.7E-14 80.2 10.1 151 4-178 16-179 (183)
9 >1td9_A Phosphate acetyltransf 99.1 3.4E-09 1E-13 77.4 11.7 126 2-132 12-150 (177)
10 >1vmi_A Putative phosphate ace 99.0 2.7E-09 8.1E-14 78.1 9.9 109 142-252 34-161 (178)
11 >1yxo_A 4-hydroxythreonine-4-p 98.9 3.8E-06 1.1E-10 58.2 23.4 266 13-334 3-327 (328)
12 >1vmi_A Putative phosphate ace 98.9 2.3E-08 6.8E-13 72.2 10.0 139 12-175 3-155 (177)
13 >2af4_C Phosphate acetyltransf 98.9 1.4E-08 4.1E-13 73.6 8.6 150 4-179 8-171 (174)
14 >1ptm_A 4-hydroxythreonine-4-p 98.8 1.9E-06 5.5E-11 60.2 18.8 266 12-334 4-328 (329)
15 >2hi1_A 4-hydroxythreonine-4-p 98.4 0.00019 5.7E-09 47.5 22.8 271 8-330 2-329 (330)
16 >1yco_A Branched-chain phospho 97.1 0.0013 3.8E-08 42.3 5.7 97 12-140 1-100 (127)
17 >2pju_A Propionate catabolism 84.4 0.48 1.4E-05 26.1 1.7 64 43-124 14-80 (136)
18 >1mkz_A Molybdenum cofactor bi 75.2 5.6 0.00016 19.4 5.1 64 181-245 6-80 (172)
19 >3ff1_A Glucose-6-phosphate is 64.1 3.9 0.00012 20.3 1.9 31 202-232 28-58 (118)
20 >1kzy_C Tumor suppressor P53-b 63.1 5.5 0.00016 19.4 2.6 33 222-254 40-72 (80)
21 >2g4r_A MOGA, molybdopterin bi 62.1 8.2 0.00024 18.3 3.3 62 183-245 1-73 (160)
22 >2x0d_A WSAF; GT4 family, tran 61.0 11 0.00032 17.5 3.7 69 184-252 8-100 (160)
23 >1x1q_A Tryptophan synthase be 60.6 9.1 0.00027 18.0 3.3 35 94-128 7-43 (112)
24 >3c48_A Predicted glycosyltran 56.6 13 0.00038 17.0 5.4 16 314-329 153-168 (188)
25 >1v8z_A Tryptophan synthase be 54.1 14 0.0004 16.9 3.3 37 94-130 7-45 (109)
26 >1y5e_A Molybdenum cofactor bi 52.2 15 0.00045 16.6 5.1 62 183-245 11-83 (169)
27 >1jlj_A Gephyrin; globular alp 48.2 18 0.00052 16.2 4.1 65 181-245 10-89 (189)
28 >3k93_A Phage related exonucle 45.6 7.8 0.00023 18.4 1.0 58 178-242 47-106 (223)
29 >2fts_A Gephyrin; gephyrin, ne 42.6 21 0.00064 15.7 3.7 14 183-196 19-32 (174)
30 >2g2c_A Putative molybdenum co 41.8 11 0.00031 17.6 1.1 61 184-245 4-80 (167)
31 >2ja9_A Exosome complex exonuc 40.5 23 0.00068 15.5 3.4 48 282-334 22-70 (85)
32 >1a6d_A Thermosome (alpha subu 39.5 24 0.00071 15.4 4.4 66 181-251 16-88 (153)
33 >1uz5_A MOEA protein, 402AA lo 38.4 21 0.00061 15.8 2.2 63 181-245 19-99 (168)
34 >1ass_A Thermosome; chaperonin 38.0 25 0.00075 15.2 3.5 65 181-250 17-88 (159)
35 >1q3q_A Thermosome alpha subun 37.3 26 0.00077 15.1 4.3 65 181-250 15-86 (151)
36 >3kbq_A Protein TA0487; struct 35.9 10 0.0003 17.7 0.3 61 184-245 2-73 (172)
37 >1su8_A CODH 2, carbon monoxid 35.8 27 0.00081 15.0 3.0 38 205-242 64-121 (198)
38 >1xmx_A Hypothetical protein V 33.6 30 0.00088 14.8 6.0 123 12-156 2-131 (141)
39 >1a6d_B Thermosome (beta subun 33.6 30 0.00088 14.8 3.7 66 181-251 15-87 (152)
40 >1g8l_A Molybdopterin biosynth 32.9 30 0.0009 14.7 4.1 20 177-196 15-34 (171)
41 >2pbq_A Molybdenum cofactor bi 31.8 32 0.00094 14.6 3.9 62 183-245 3-79 (178)
42 >1wu2_A MOEA protein, molybdop 31.8 30 0.00087 14.8 2.1 14 184-197 23-36 (164)
43 >1tjn_A Sirohydrochlorin cobal 31.6 32 0.00095 14.6 3.9 64 185-248 24-97 (130)
44 >2o2e_A Tryptophan synthase be 31.3 32 0.00096 14.5 3.1 35 95-129 9-45 (115)
45 >1v4v_A UDP-N-acetylglucosamin 30.6 33 0.00099 14.5 5.9 135 9-171 2-143 (204)
46 >1rzu_A Glycogen synthase 1; g 28.8 36 0.0011 14.3 5.0 18 316-333 167-184 (200)
47 >2fqx_A Membrane lipoprotein T 27.3 38 0.0011 14.1 5.7 63 184-246 3-74 (147)
48 >2jh3_A Ribosomal protein S2-r 26.2 40 0.0012 14.0 3.9 41 186-228 24-64 (132)
49 >1pfk_A Phosphofructokinase; t 25.8 40 0.0012 13.9 8.3 158 12-192 2-168 (185)
50 >2vvr_A Ribose-5-phosphate iso 25.0 42 0.0012 13.8 4.2 89 12-142 1-89 (130)
51 >2nn6_G Exosome complex exonuc 24.4 23 0.00068 15.5 0.5 53 283-340 22-75 (80)
52 >2kpm_A Uncharacterized protei 21.4 49 0.0014 13.4 1.7 21 280-300 45-65 (105)
53 >2pjk_A 178AA long hypothetica 21.3 49 0.0015 13.4 4.5 15 183-197 13-27 (178)
54 >1o58_A O-acetylserine sulfhyd 21.3 49 0.0015 13.4 2.7 36 94-129 7-45 (102)
55 >2o2c_A GPI, glucose-6-phospha 20.7 39 0.0011 14.0 1.0 13 50-62 69-81 (175)
56 >3ddo_A Urdpase, upase, uridin 20.4 19 0.00055 16.0 -0.6 77 44-120 21-98 (253)
57 >3i6v_A Periplasmic His/Glu/Gl 20.4 52 0.0015 13.3 1.8 15 99-113 47-61 (83)
No 1
>>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} (A:)
Probab=100.00 E-value=0 Score=549.04 Aligned_cols=339 Identities=32% Similarity=0.547 Sum_probs=324.2
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHCC
Q ss_conf 23999974687778177799999999857991799978989999998626975155799778520177830679997137
Q gi|254780498|r 12 VDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRRGR 91 (364)
Q Consensus 12 m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR~kK 91 (364)
-+||++|+||||+||++.+.+|..++.+++.++++|||+++.|++.+++++. ++..+++.+.+.|++.|..++|++|
T Consensus 2 ~~rIa~~~~g~deg~d~~vl~A~~~~~~~~~~~~iLvG~~~~I~~~l~~~~~---~~~~~~~~~~~~~~~~~~~a~r~~~ 78 (345)
T 1vi1_A 2 SLRIAVDAXGGDHAPKAVIDGVIKGIEAFDDLHITLVGDKTTIESHLTTTSD---RITVLHADEVIEPTDEPVRAVRRKK 78 (345)
T ss_dssp CEEEEEESSCSSSTTHHHHHHHHHHHHHCTTEEEEEEECHHHHHTTCCSCCT---TEEEEECCBCCCTTSCHHHHHHHCT
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCC---CEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 5299998048855818899999999987889869999489999999843705---6389858762058865578988511
Q ss_pred CCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCC-CEEEEECCCCCCCCHHHHHHHH
Q ss_conf 642799999998549953999706426788888753225567632200110558898-4599861327778989999999
Q gi|254780498|r 92 NVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVKG-KCIILDVGATIGSTVSHMVQLS 170 (364)
Q Consensus 92 ~~SSm~~a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g-~~vllD~GAN~d~~~~~L~qfA 170 (364)
+ +||+.|++||++|++|++||+|||+++++.+++++|+++++.||+++.++|+.++ .++|+|+|+|++|+|++|+|||
T Consensus 79 ~-~s~~~a~~lv~~G~aD~~vsg~~t~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~D~g~n~~p~~~~l~~iA 157 (345)
T 1vi1_A 79 N-SSXVLXAQEVAENRADACISAGNTGALXTAGLFIVGRIKGIDRPALAPTLPTVSGDGFLLLDVGANVDAKPEHLVQYA 157 (345)
T ss_dssp T-BHHHHHHHHHHTTSCSEEEECSCHHHHHHHHHHTTCBCTTCSSCEEECEECCSSSCCEEEECSSSCSSCCHHHHHHHH
T ss_pred H-HHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCHHHHHHH
T ss_conf 0-289999998631465647744671778999988775313553342002266778996079827867678808999999
Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHHHH
Q ss_conf 99999999856899965899840455555657999999997402457132002345545324568389975512788999
Q gi|254780498|r 171 ILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIK 250 (364)
Q Consensus 171 ~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~LK 250 (364)
+|+++|++.++|+++|||||||+|+|++||.+.+++|+++|++. +++||.||+|+++++++++||+|||||+||+.+|
T Consensus 158 ~~~a~~~~~~lGie~PkValLs~g~~~~~~~~~~~eA~~ll~~~--~~~~~~G~ie~~~~l~~~~~v~v~dg~~~n~~~k 235 (345)
T 1vi1_A 158 IXGSVYSQQVRGVTSPRVGLLNVGTEDKKGNELTKQTFQILKET--ANINFIGNVEARDLLDDVADVVVTDGFTGNVTLK 235 (345)
T ss_dssp HHHHHHHHHTSCCSSCEEEEEESSSSTTCSCHHHHHHHHHHHSC--TTSEEEEEEEGGGGGGTSCSEEECCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHC--CCCCEEEEECCCEECCCCEEEEEECCHHHHHHHH
T ss_conf 99999999955976522787404455776227899999875323--7843477503542038945799974311238998
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 98888999999999863222088999999899999999726968708746742161489838899868999999999999
Q gi|254780498|r 251 AAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHNM 330 (364)
Q Consensus 251 t~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~~ 330 (364)
++||.+.+++++||+.++++++..+.+..+...+.+++.++||..|+|++|+|++++|+++||+|++.+++|+|..|...
T Consensus 236 ~~eG~a~~l~~~lk~~~~~~i~p~l~a~ni~~kl~~~~~~~~~~~~~G~illG~~~pv~~~sr~s~~~~i~~~i~~a~~~ 315 (345)
T 1vi1_A 236 TLEGSALSIFKXXRDVXTSTLTSKLAAAVLKPKLKEXKXKXEYSNYGGASLFGLKAPVIKAHGSSDSNAVFRAIRQAREX 315 (345)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC-------CCHHHHHHHHHHHCGGGSCCEEEETBSSCEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 76547889999999886110466788888789999999746933029778972683289947999989999999999999
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96070689999999998767522233
Q gi|254780498|r 331 SQNGFIDMVKDDMQRVRDSLLDVHEK 356 (364)
Q Consensus 331 ~~~~~~~~i~~~~~~~~~~~~~~~~~ 356 (364)
++++++++|++++++.+.+.++..+.
T Consensus 316 a~~~~~~~i~~~l~~~~~~~~~~~~~ 341 (345)
T 1vi1_A 316 VSQNVAALIQEEVKEEKTDEEGGSHH 341 (345)
T ss_dssp HHTTHHHHHHHHTSHHHHTC------
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 98668999999997503643478656
No 2
>>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} (A:1-119,A:283-336)
Probab=100.00 E-value=0 Score=351.36 Aligned_cols=172 Identities=26% Similarity=0.444 Sum_probs=164.2
Q ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 98239999746877781777999999998579917999789899999986269751557997785201778306799971
Q gi|254780498|r 10 GNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRR 89 (364)
Q Consensus 10 ~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR~ 89 (364)
++|+|||||+||||++|+++|+|+..|++++|+++|+|||+++.|+++++++ +|++|+||+++|+|+|+|+.|+|+
T Consensus 1 s~~~kIAvDaMGgD~~p~~~i~ga~~al~~~~~~~i~LvG~~~~i~~~l~~~----~ri~iv~a~~vI~m~d~p~~aiR~ 76 (173)
T 1u7n_A 1 SNAXKIAVDAXGGDNAPQAIVEGVXLAKQDFPDIEFQLYGKEAEIKKYITDE----KNITIIHTDEKIASDDEPVKAIRR 76 (173)
T ss_dssp ---CEEEEESSCSTTTTHHHHHHHHHHHHHCTTCEEEEEECHHHHHTTCSCC----TTEEEEECSCCCCTTCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHCCC----CCEEEEECCCCCCCCCCHHHHHHH
T ss_conf 9953999982598668078999999999878897799993999999865215----883899687613689757899986
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf 37642799999998549953999706426788888753225567632200110558898459986132777898999999
Q gi|254780498|r 90 GRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKCIILDVGATIGSTVSHMVQL 169 (364)
Q Consensus 90 kK~~SSm~~a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g~~vllD~GAN~d~~~~~L~qf 169 (364)
||+ ||||+|+++||+|+||||||||||||+|++++|++||+||
T Consensus 77 kk~-SSm~~a~~lvk~g~ada~VSaGnTGA~~a~a~~~lgrl~G------------------------------------ 119 (173)
T 1u7n_A 77 KKT-ASXVLAAQAVKNGEADAIFSAGNTGALLAAGLFIVGRIKN------------------------------------ 119 (173)
T ss_dssp CTT-SHHHHHHHHHHHTSCSEEEESSCHHHHHHHHHHTTCBCTT------------------------------------
T ss_pred HCC-CCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCHHH------------------------------------
T ss_conf 203-4188999998633355675337752111114555320544------------------------------------
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHHH
Q ss_conf 99999999985689996589984045555565799999999740245713200234554532456838997551278899
Q gi|254780498|r 170 SILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAI 249 (364)
Q Consensus 170 A~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~L 249 (364)
T Consensus 120 -------------------------------------------------------------------------------- 119 (173)
T 1u7n_A 120 -------------------------------------------------------------------------------- 119 (173)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 99888899999999986322208899999989999999972696870874674216148983889986899999999999
Q gi|254780498|r 250 KAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHN 329 (364)
Q Consensus 250 Kt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~ 329 (364)
+|||||||||||+|||+||+|+++||+|||++|.+
T Consensus 120 ---------------------------------------------eygGA~lLGl~g~vik~HGsS~~~a~~nAi~~a~~ 154 (173)
T 1u7n_A 120 ---------------------------------------------KHGGAVLFGLKAPVIKTHGATGPDAVRYTIRQIHT 154 (173)
T ss_dssp ---------------------------------------------GGCCEEEETBSSCEEECCTTCCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------CCCCEEEECCCCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf ---------------------------------------------16988897488328975889998999999999999
Q ss_pred HHHCCHHHHHHHHHHHHH
Q ss_conf 996070689999999998
Q gi|254780498|r 330 MSQNGFIDMVKDDMQRVR 347 (364)
Q Consensus 330 ~~~~~~~~~i~~~~~~~~ 347 (364)
+++++++++|+++|++..
T Consensus 155 ~~~~~i~~~i~~~l~~~~ 172 (173)
T 1u7n_A 155 XLETQVVPQLVEYYEGKA 172 (173)
T ss_dssp HHHTTHHHHHHHHHC---
T ss_pred HHHHCHHHHHHHHHHCCC
T ss_conf 999677999999986359
No 3
>>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} (A:120-228)
Probab=100.00 E-value=4.3e-42 Score=284.97 Aligned_cols=106 Identities=37% Similarity=0.653 Sum_probs=101.6
Q ss_pred CCCCCHHHCCCCCC---CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 63220011055889---845998613277789899999999999999985689996589984045555565799999999
Q gi|254780498|r 134 VDRPSLAAFWPTVK---GKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARL 210 (364)
Q Consensus 134 v~RPala~~~Pt~~---g~~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~L 210 (364)
|+||||+++|||.+ +++++||+|||+||+|++|+|||+||++|+|.++++++|||||||||+|+.||++++|+||+|
T Consensus 1 i~RPal~~~~Pt~~~~~g~~vllD~GAN~~~~pe~L~qfA~mG~~ya~~~~~i~~PrVgLLNiG~Ee~KG~~~~~~a~~l 80 (109)
T 1u7n_A 1 VERPGLXSTLPVXGEPDKGFDXLDLGANADNKPEHLVQYAVLGSFYAEKVRNVQNPRVGLLNNGTEETKGSELTKKAFEL 80 (109)
T ss_dssp CSSCEEEEEEECTTCTTCEEEEECSSSCSCCCHHHHHHHHHHHHHHHHHTTCCSSCCEEEECSCC----CCHHHHHHHHH
T ss_pred HCCCCCEEECCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHCCCCHHHHHHHHH
T ss_conf 12432025456567887845999666322478899999999999999985798653488740403210256999999997
Q ss_pred HHHCCCCCCCEECCCCHHHCCCCCCCEEEEC
Q ss_conf 7402457132002345545324568389975
Q gi|254780498|r 211 LRGECCGAFKYKGFIEANDIAKGFVDVIVTE 241 (364)
Q Consensus 211 L~~~~~~~~nF~GniEg~~i~~g~~DVvV~D 241 (364)
|+++. ++||+|||||+||++|.+||||||
T Consensus 81 L~~~~--~~nf~G~vEg~di~~g~~DVvV~D 109 (109)
T 1u7n_A 81 LAADE--TINFVGNVEARELLNGVADVVVTD 109 (109)
T ss_dssp HHHCT--TSCEEEEECGGGGGGCSCSEEECC
T ss_pred HHHCC--CCCEEEECCCCCCCCCCEEEEEEC
T ss_conf 43135--755035524653468841699964
No 4
>>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, PTB, nysgxrc; 2.40A {Enterococcus faecalis V583} (A:95-246)
Probab=99.94 E-value=2.3e-26 Score=185.73 Aligned_cols=124 Identities=14% Similarity=0.136 Sum_probs=113.2
Q ss_pred CCCCCCCCCCHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE---ECCCCCCCCCHHHH
Q ss_conf 255676322001105588984599861327778989999999999999998568999658998---40455555657999
Q gi|254780498|r 129 SRISGVDRPSLAAFWPTVKGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLL---NVGTEEIKGNDVLQ 205 (364)
Q Consensus 129 g~i~Gv~RPala~~~Pt~~g~~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLL---NiG~E~~KG~~~~k 205 (364)
++.||++||+++.+ ..++.+++.|+|+|++|++++|+|||++++.|+|. +|+++|||||| |+|+|+.|+++.++
T Consensus 1 k~~~~i~~~a~~~~--~~~~~~~~~D~gvn~~p~~~~l~~ia~~a~~~~~~-lg~~~PrVAlLs~s~~g~~~~~~~~~~~ 77 (152)
T 1yco_A 1 KNKPILSHVAMVEL--PAGKTFLLTDCAMNIAPTQATLIEIVENAKEVAQK-LGLHHPKIALLSAAENFNPKMPSSVLAK 77 (152)
T ss_dssp BCSSSCEEEEEEEC--SSSCEEEEECSSSCSSCCHHHHHHHHHHHHHHHHH-TTCSSCEEEEECSCSSCCTTCHHHHHHH
T ss_pred CCCCEEEEEEEEEC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH-HCCCCCCEEEEECCCCCCCCCHHHHHHH
T ss_conf 99840688999873--89937999326567575699999999999999998-4883402046630256788752257789
Q ss_pred HHHHHHHHCCCCCCCEECCCCHHHCC--------------CCCCCEEEE-CCHHHHHHHHHHHHHHH
Q ss_conf 99999740245713200234554532--------------456838997-55127889999888899
Q gi|254780498|r 206 ESARLLRGECCGAFKYKGFIEANDIA--------------KGFVDVIVT-EGFSGNIAIKAAEGAVR 257 (364)
Q Consensus 206 ea~~LL~~~~~~~~nF~GniEg~~i~--------------~g~~DVvV~-DGFtGNi~LKt~EG~~~ 257 (364)
++++++++. .+++|.|++|.++++ .|.+||+|+ |||+||+++|++|+++.
T Consensus 78 ~a~~~l~~~--~~~~~~G~i~~d~al~~~~~~~k~~~s~~~G~advlI~Pd~~sgNi~~K~~~~~~~ 142 (152)
T 1yco_A 78 EVTAHFNDQ--QEATVFGPLSLDLATSEEAVAHKRYSGPIMGDADILVVPTIDVGNCLYKSLTLFGH 142 (152)
T ss_dssp HHHHHHSSC--SSCEEEEEECHHHHHCHHHHHHTTCCSSCSSCCSEEECSSHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHH--HHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHEEECHHHHHHHHHHHHHHCCC
T ss_conf 999863000--24431143100110005555432147754464200000268788999999997089
No 5
>>1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.75A {Bacillus subtilis} (A:151-302)
Probab=99.18 E-value=2.2e-10 Score=85.02 Aligned_cols=117 Identities=18% Similarity=0.285 Sum_probs=92.2
Q ss_pred CCCCCCHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE---CCCCCCCCCHHHHHHHH
Q ss_conf 763220011055889845998613277789899999999999999985689996589984---04555556579999999
Q gi|254780498|r 133 GVDRPSLAAFWPTVKGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN---VGTEEIKGNDVLQESAR 209 (364)
Q Consensus 133 Gv~RPala~~~Pt~~g~~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN---iG~E~~KG~~~~kea~~ 209 (364)
|+.+-.-...+|..++.+++.|+|.|++|+++++++++.+....+|. +|++ ||||+|+ .|++...-+...+++.+
T Consensus 1 G~~~~~~~~~~~~~~~~l~~sD~~vn~~P~~eq~~~I~~~a~~~a~~-lG~e-PkVA~LS~s~~g~~~~~s~~~~~~a~~ 78 (152)
T 1td9_A 1 GVKKTSGVFIMARGEEQYVFADCAINIAPDSQDLAEIAIESANTAKM-FDIE-PRVAMLSFSTKGSAKSDETEKVADAVK 78 (152)
T ss_dssp TCCCCEEEEEEEETTEEEEEECSSSCSSCCHHHHHHHHHHHHHHHHT-TTCC-CCEEEECSSSTTSSCSHHHHHHHHHHH
T ss_pred CCCEEEEEEEECCCCCCEEEECCCEEECCCHHHHHHHHHHHHHHHHH-HCCC-CCEEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 86100016530468850477267307668899999999999999986-2546-521013204667888853056889999
Q ss_pred HHHHCCCCCCCEECCCCHH--------------HCCCCCCCEEEE-CCHHHHHHHHHH
Q ss_conf 9740245713200234554--------------532456838997-551278899998
Q gi|254780498|r 210 LLRGECCGAFKYKGFIEAN--------------DIAKGFVDVIVT-EGFSGNIAIKAA 252 (364)
Q Consensus 210 LL~~~~~~~~nF~GniEg~--------------~i~~g~~DVvV~-DGFtGNi~LKt~ 252 (364)
++++.. +++.+-|.+..+ .-..|.+||+|- |.=+||+.-|+.
T Consensus 79 ~~~~~~-~~~~idG~~~~D~Al~~e~~~~k~~~s~v~g~aniLI~P~l~agNi~~K~l 135 (152)
T 1td9_A 79 IAKEKA-PELTLDGEFQFDAAFVPSVAEKKAPDSEIKGDANVFVFPSLEAGNIGYKIA 135 (152)
T ss_dssp HHHHHC-TTSCEEEEECHHHHHCHHHHHHHCTTSSCSSCCSEEECSSHHHHHHHHHHH
T ss_pred HHHHHC-CCCEECCCCCHHHCCCHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHHHHH
T ss_conf 996138-885462553054303876621127998668878889938807879999999
No 6
>>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like nucleotide-binding fold, structural genomics, BSGC structure funded by NIH; 2.70A {Streptococcus pyogenes} (A:153-306)
Probab=99.17 E-value=2.1e-10 Score=85.04 Aligned_cols=117 Identities=21% Similarity=0.289 Sum_probs=91.1
Q ss_pred CCCCCCHHH--CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE---CCCCCCCCCHHHHHH
Q ss_conf 763220011--055889845998613277789899999999999999985689996589984---045555565799999
Q gi|254780498|r 133 GVDRPSLAA--FWPTVKGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN---VGTEEIKGNDVLQES 207 (364)
Q Consensus 133 Gv~RPala~--~~Pt~~g~~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN---iG~E~~KG~~~~kea 207 (364)
|+.+-.-.. .+|+.++..++.|++.|++|+.+++++++++....+|. +|++ ||||+|+ .|++...-+...+++
T Consensus 1 G~~~~s~v~~~~~~~~~~~lf~sD~~in~~P~~e~~~~Ia~~aa~~a~~-~Gie-PkVA~LS~s~~gs~~~~s~~~~~~a 78 (154)
T 1r5j_A 1 GISRTSGVFLXNRENTSERYVFADCAINIDPTAQELAEIAVNTAETAKI-FDID-PKIAXLSFSTKGSGKAPQVDKVREA 78 (154)
T ss_dssp TCSSCEEEEEEEEGGGTEEEEESCSSSCSSCCHHHHHHHHHHHHHHHHH-TTCC-CCEEEECSCSTTSSCSHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCEEEEECCCCEECCCHHHHHHHHHHHHHHHHH-CCCC-CCEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 4454430688873266641798316011184999999999999999997-3999-8345541355789986279999999
Q ss_pred HHHHHHCCCCCCCEECCCCHH--------------HCCCCCCCEEEECC-HHHHHHHHHH
Q ss_conf 999740245713200234554--------------53245683899755-1278899998
Q gi|254780498|r 208 ARLLRGECCGAFKYKGFIEAN--------------DIAKGFVDVIVTEG-FSGNIAIKAA 252 (364)
Q Consensus 208 ~~LL~~~~~~~~nF~GniEg~--------------~i~~g~~DVvV~DG-FtGNi~LKt~ 252 (364)
.+++++.. .++.+-|.+--+ .-..|.+||+|.-. =+||+..|+.
T Consensus 79 ~~~~~~~~-~~~~vdG~l~~D~Al~~~~~~~k~~~s~v~G~AnvLI~P~l~agNi~~K~l 137 (154)
T 1r5j_A 79 TEIATGLN-PDLALDGELQFDAAFVPETAAIKAPDSAVAGQANTFVFPDLQSGNIGYKIA 137 (154)
T ss_dssp HHHHHHHC-TTSCEEEEECHHHHHCHHHHHHHSCSCSSTTCCCEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCCCCCCCCHHHHCCHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHH
T ss_conf 99987068-896247863377761978899748998778989889938817879999999
No 7
>>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound PER monomer, acyltransferase; HET: COA; 2.15A {Methanosarcina thermophila} (C:144-302)
Probab=99.09 E-value=9.4e-10 Score=81.00 Aligned_cols=105 Identities=18% Similarity=0.271 Sum_probs=86.7
Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE---CCCCCCCCCHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 89845998613277789899999999999999985689996589984---045555565799999999740245713200
Q gi|254780498|r 146 VKGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN---VGTEEIKGNDVLQESARLLRGECCGAFKYK 222 (364)
Q Consensus 146 ~~g~~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN---iG~E~~KG~~~~kea~~LL~~~~~~~~nF~ 222 (364)
.++..++-|++.|++|++++|++++......+|. +|+++|||++|+ .|++...-+...+++.+++++.. +++.+-
T Consensus 20 ~~~~l~~sD~~vn~~P~~~qla~I~~~a~~~a~~-lGie~PkVA~LS~s~~gs~~~~st~~~~~a~~~~~~~~-~~~~vd 97 (159)
T 2af4_C 20 SDGTFLFADSGMVEMPSVEDVANIAVISAKTFEL-LVQDVPKVAMLSYSTKGSAKSKLTEATIASTKLAQELA-PDIAID 97 (159)
T ss_dssp BTTEEEEETSSSCSSCCHHHHHHHHHHHHHHHHH-HHCSCCEEEEECSCSTTSCCSHHHHHHHHHHHHHHHHC-TTSEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH-HCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC-CCCEEC
T ss_conf 7863998365450174288999999999999987-21333304456512568987720689999999974418-894042
Q ss_pred CCCCH--------------HHCCCCCCCEEEECCH-HHHHHHHHH
Q ss_conf 23455--------------4532456838997551-278899998
Q gi|254780498|r 223 GFIEA--------------NDIAKGFVDVIVTEGF-SGNIAIKAA 252 (364)
Q Consensus 223 GniEg--------------~~i~~g~~DVvV~DGF-tGNi~LKt~ 252 (364)
|-+-- +.-+.|.+||+|.-.. +|||.-|.+
T Consensus 98 Gel~~D~Al~~~~~~~k~~~s~v~G~Anvli~Pnl~agNi~~K~~ 142 (159)
T 2af4_C 98 GELQVDAAIVPKVAASKAPGSPVAGKANVFIFPDLNCGNIAYKIA 142 (159)
T ss_dssp EEECHHHHHCHHHHHHHSTTCSSTTSCCEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHCCHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHH
T ss_conf 652065522967799758998568979989948807878999999
No 8
>>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like nucleotide-binding fold, structural genomics, BSGC structure funded by NIH; 2.70A {Streptococcus pyogenes} (A:1-152,A:307-337)
Probab=99.08 E-value=1.3e-09 Score=80.20 Aligned_cols=151 Identities=15% Similarity=0.159 Sum_probs=108.1
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCC--
Q ss_conf 311138982399997468777817779999999985799179997898999999862697515579977852017783--
Q gi|254780498|r 4 MDVLQGGNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDE-- 81 (364)
Q Consensus 4 ~~~~~~~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde-- 81 (364)
+..+..++..||++ +-|. -..+++++..+.++. -.+++|+|++++|+..+++.++..+.++|+|+++.-.+++
T Consensus 16 l~~~ak~~~krIv~-~ege---D~rvL~Aa~~~~~eg-ia~pILvG~~~~I~~~a~~~gl~l~~~~Iid~~~~~~~~~~~ 90 (183)
T 1r5j_A 16 LREKILGKNXKIVF-PEGN---DERVVRAAARLKFEG-LLEPIILGQSEEVRNLLTKLGFADQDYTIINPNEYADFDKXK 90 (183)
T ss_dssp HHHHHTTSCCEEEE-SCSS---CHHHHHHHHHHHTTT-SCEEEEBSCHHHHHHHHHHTTCCCSSCCCBCSSSCTTHHHHH
T ss_pred HHHHHHHCCCEEEE-CCCC---CHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHH
T ss_conf 99988528998998-0879---989999999999879-968999779999999999769996575566878668899999
Q ss_pred HHHHHHHHCCCCHH---------HHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCE
Q ss_conf 06799971376427---------99999998549953999706--42678888875322556763220011055889845
Q gi|254780498|r 82 RPADALRRGRNVSS---------MWRAIEAVKKNQAASVVTAG--NTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKC 150 (364)
Q Consensus 82 ~P~~AlR~kK~~SS---------m~~a~~lvk~g~aDa~VSaG--nTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g~~ 150 (364)
.....+|++|..+. .+.|++||+.|+||++|+.- +|+.+|.+++.++|+.|- | +
T Consensus 91 ~~~~~~r~rkg~~~~A~~~~~~~~~~Aa~lV~~G~aD~lv~G~~~sT~~~lra~l~iIG~~P~---p------------~ 155 (183)
T 1r5j_A 91 EAFVEVRKGKATLEDADKXLRDVNYFGVXLVKXGLADGXVSGAIHSTADTVRPALQIIKTKPK---P------------V 155 (183)
T ss_dssp HHHHHHHTTTCCHHHHHHHTTSHHHHHHHHHHTTSCSEEEECSSSCSHHHHHHHHHSSCBCTS---C------------E
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHCCCCC---C------------E
T ss_conf 999999747886999999976579999999974404403406654647875447764105649---8------------7
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9986132777898999999999999999
Q gi|254780498|r 151 IILDVGATIGSTVSHMVQLSILGSFFAR 178 (364)
Q Consensus 151 vllD~GAN~d~~~~~L~qfA~mGs~yak 178 (364)
-=|-- -|..++.+.-+...++-++
T Consensus 156 ndlsr----g~~~~di~~~~~it~~q~~ 179 (183)
T 1r5j_A 156 NDLSR----GSSAEDIYKLAIITAAQAI 179 (183)
T ss_dssp EECCT----TCCHHHHHHHHHHHHHHHH
T ss_pred EECCC----CCCHHHHHHHHHHHHHHHH
T ss_conf 97899----9999999999999999999
No 9
>>1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.75A {Bacillus subtilis} (A:1-150,A:303-329)
Probab=99.06 E-value=3.4e-09 Score=77.44 Aligned_cols=126 Identities=13% Similarity=0.075 Sum_probs=95.2
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCC
Q ss_conf 74311138982399997468777817779999999985799179997898999999862697515579977852017783
Q gi|254780498|r 2 NQMDVLQGGNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDE 81 (364)
Q Consensus 2 ~~~~~~~~~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde 81 (364)
+++..+..++..||++ +-|. -..+++++..++++. -.+.+|+|++++|+..+++.++..+.++|+|+++.-..++
T Consensus 12 ~~l~~~ak~~~krIv~-~eg~---D~rvL~AA~~~~~eg-ia~pILiG~~~~I~~~a~~~gl~l~~~~Iid~~~~~~~~~ 86 (177)
T 1td9_A 12 STVQEKVAGKDVKIVF-PEGL---DERILEAVSKLAGNK-VLNPIVIGNENEIQAKAKELNLTLGGVKIYDPHTYEGMED 86 (177)
T ss_dssp HHHHHHHTTSCCEEEE-SCTT---CHHHHHHHHHHHHTT-SSEEEEESCHHHHHHHHHTTTBCCTTCEEECTTTCTTHHH
T ss_pred HHHHHHHHCCCCEEEE-ECCC---CHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHH
T ss_conf 9999998539998997-2889---989999999999869-9689997799999999998699845556678763266899
Q ss_pred H--HHHHHHHCCCC---------HHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHCCCCC
Q ss_conf 0--67999713764---------2799999998549953999706--42678888875322556
Q gi|254780498|r 82 R--PADALRRGRNV---------SSMWRAIEAVKKNQAASVVTAG--NTGALIAMARLCLSRIS 132 (364)
Q Consensus 82 ~--P~~AlR~kK~~---------SSm~~a~~lvk~g~aDa~VSaG--nTGA~la~a~~~lg~i~ 132 (364)
- -...+|++|+. ...+.|.+||+.|+||++++.- +|..++.+++.++|+-|
T Consensus 87 ~~~~~~~~r~~KG~~~~a~~~~~dp~~~Aa~mV~~G~aD~~v~G~~~sT~~~Lra~l~iIg~~p 150 (177)
T 1td9_A 87 LVQAFVERRKGKATEEQARKALLDENYFGTMLVYKGLADGLVSGAAHSTADTVRPALQIIKTKE 150 (177)
T ss_dssp HHHHHHHHTTTSSCHHHHHHHTTSHHHHHHHHHHTTSCSEEEECTTSCHHHHHHHHHHTSCBCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCCCHHHCEEEEEECCCCC
T ss_conf 9999887750577299999998644799999886154010463244454332203455225889
No 10
>>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structural genomics, JCSG, protein structure initiative, PSI; 2.32A {Escherichia coli} (A:1-23,A:155-309)
Probab=99.02 E-value=2.7e-09 Score=78.06 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=86.9
Q ss_pred CCCC-CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE---CCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 0558-89845998613277789899999999999999985689996589984---0455555657999999997402457
Q gi|254780498|r 142 FWPT-VKGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN---VGTEEIKGNDVLQESARLLRGECCG 217 (364)
Q Consensus 142 ~~Pt-~~g~~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN---iG~E~~KG~~~~kea~~LL~~~~~~ 217 (364)
.+|. .++..++.|++.|++|++++|++++......++.+ +.++|||++|+ .|++....+...+++.+++++.. +
T Consensus 34 ~~~~~~~~~lf~sD~~in~~P~~eql~dIa~naa~~a~~l-g~~~PkVAlLS~se~gs~~~~st~~~~~a~~~~~~~~-~ 111 (178)
T 1vmi_A 34 XLPQYSGPALGFADCSVVPQPTAAQLADIALASAETWRAI-TGEEPRVAXLSFSSNGSARHPCVANVQQATEIVRERA-P 111 (178)
T ss_dssp EEESSSCCCEEEESSSSCSSCCHHHHHHHHHHHHHHHHHH-HSSCCEEEEECSCSTTSSCSHHHHHHHHHHHHHHHHC-T
T ss_pred ECCCCCCCEEEEECCCCEECCCHHHHHHHHHHHHHHHHHH-CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC-C
T ss_conf 2144556328984454412489999999999899999984-6753310033201567886367899999999998519-8
Q ss_pred CCCEECCCCHHH--------------CCCCCCCEEEECCH-HHHHHHHHH
Q ss_conf 132002345545--------------32456838997551-278899998
Q gi|254780498|r 218 AFKYKGFIEAND--------------IAKGFVDVIVTEGF-SGNIAIKAA 252 (364)
Q Consensus 218 ~~nF~GniEg~~--------------i~~g~~DVvV~DGF-tGNi~LKt~ 252 (364)
++.+-|-+--+- -..|.+||++.--. +|||.-|..
T Consensus 112 ~~~VdGelq~D~Als~e~~~~K~~~s~v~G~AnvLIfPnleagNi~yK~l 161 (178)
T 1vmi_A 112 KLVVDGELQFDAAFVPEVAAQKAPASPLQGKANVXVFPSLEAGNIGYKIA 161 (178)
T ss_dssp TSEEEEEECHHHHHCHHHHHHHCTTCTTTTCCSEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHHHH
T ss_conf 76426773055552777784249999868979889808828879999999
No 11
>>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural genomics, PSI; 2.01A {Pseudomonas aeruginosa} (A:)
Probab=98.94 E-value=3.8e-06 Score=58.23 Aligned_cols=266 Identities=15% Similarity=0.140 Sum_probs=162.3
Q ss_pred EEEEEECCCCC--CCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCC---------------
Q ss_conf 39999746877--7817779999999985799179997898999999862697515579977852---------------
Q gi|254780498|r 13 DTISLDLMGGD--LGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEV--------------- 75 (364)
Q Consensus 13 ~kIAVDaMGGD--~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~--------------- 75 (364)
++||| .||-= -||+.++ +++.+....+++++|+.+.++...+........-.|.+.++
T Consensus 3 ~~iaI-T~GDpaGIGpEIi~----kal~~~~~~~~viiGd~~vL~~~~~~lg~~~~~~~i~~~~~~~~~~~~~~l~~~~~ 77 (328)
T 1yxo_A 3 LRFAL-TPGEPAGIGPDLCL----LLARSAQPHPLIAIASRTLLQERAGQLGLAIDLKDVSPAAWPERPAKAGQLYVWDT 77 (328)
T ss_dssp CCEEE-ECCSTTSSHHHHHH----HHTTSCCSSCEEEEECHHHHHHHHHHHTCCCEEEECBTTBCCSSCCCTTEEEEEEC
T ss_pred CEEEE-ECCCCCHHHHHHHH----HHHHHCCCCCEEEEECHHHHHHHHHHCCCCCCEEECCHHHHHHHHCCCCEEEEECC
T ss_conf 63999-88986164899999----99972799998999899999999998499974346683454443125660243124
Q ss_pred ----CCCCCC-HHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHH------HHCCCCCCCCCCCHHHCC
Q ss_conf ----017783-0679997137642799999998549953999706-4267888887------532255676322001105
Q gi|254780498|r 76 ----SIAMDE-RPADALRRGRNVSSMWRAIEAVKKNQAASVVTAG-NTGALIAMAR------LCLSRISGVDRPSLAAFW 143 (364)
Q Consensus 76 ----vI~mde-~P~~AlR~kK~~SSm~~a~~lvk~g~aDa~VSaG-nTGA~la~a~------~~lg~i~Gv~RPala~~~ 143 (364)
.+.+.. ++... +-. --|+..|++++++|++||+|.+= |..++..++. -.|..+-+..++..+-.-
T Consensus 78 ~~~~~i~~G~~s~~sG-~aa--~~~i~~Av~~~~~g~~dalVT~PInK~al~~aG~~~~GHTE~la~~~~~~~~~mml~~ 154 (328)
T 1yxo_A 78 PLAAPVRPGQLDRANA-AYV--LETLTRAGQGCLDGHFAGXITAPVHKGVINEAGIPFSGHTEFLADLTHTAQVVXXLAT 154 (328)
T ss_dssp CCSSCCCTTCCCGGGH-HHH--HHHHHHHHHHHHTTSCSEEEECCCCHHHHHHTTCCCCCHHHHHHHHTTCSCCEEEEEE
T ss_pred CCCCCCCCCCCCHHHH-HHH--HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHH
T ss_conf 4222346675307777-899--9999999988751875531257220588985599737600887776335423777655
Q ss_pred CCCCCCEEEE--------ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE----CCCCCCCCCHH---HHHHH
Q ss_conf 5889845998--------613277789899999999999999985689996589984----04555556579---99999
Q gi|254780498|r 144 PTVKGKCIIL--------DVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN----VGTEEIKGNDV---LQESA 208 (364)
Q Consensus 144 Pt~~g~~vll--------D~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN----iG~E~~KG~~~---~kea~ 208 (364)
+.-.+.+ |+-. ..+.+.+.++...-....+..+++++|||+.+- -|++-.=|+|. +.-|-
T Consensus 155 ---~~LrV~l~T~HipL~~v~~--~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAGe~G~~G~EE~~iI~PAi 229 (328)
T 1yxo_A 155 ---RGLRVALATTHLPLREVAD--AISDERLTRVARILHADLRDKFGIAHPRILVCGLNPHAGEGGHLGREEIEVIEPCL 229 (328)
T ss_dssp ---TTEEEEESSCSCCHHHHHH--HCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGTTTTTCSHHHHTHHHHH
T ss_pred ---HHEEEEEEEECHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf ---3504567875104767776--64146778999999999998529864312452137200235788640799999999
Q ss_pred HHHHHCCCCCCCEECCCCHHHCCC----CCCCEEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 997402457132002345545324----56838997551-2788999988889999999998632220889999998999
Q gi|254780498|r 209 RLLRGECCGAFKYKGFIEANDIAK----GFVDVIVTEGF-SGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKS 283 (364)
Q Consensus 209 ~LL~~~~~~~~nF~GniEg~~i~~----g~~DVvV~DGF-tGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~ 283 (364)
+.+++. .++-.|.+-++-+|. +..|+|||==- .|=|.+|+.
T Consensus 230 ~~~~~~---gi~~~GP~paDt~F~~~~~~~~D~vvaMYHDQglip~K~l------------------------------- 275 (328)
T 1yxo_A 230 ERLRGE---GLDLIGPLPADTLFTPKHLEHCDAVLAXYHDQGLPVLKYK------------------------------- 275 (328)
T ss_dssp HHHHTT---TCEEEEEECHHHHTSHHHHTTCSEEEESSHHHHHHHHHHH-------------------------------
T ss_pred HHHHHC---CCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCHHHHHC-------------------------------
T ss_conf 999865---9654577782556553002333379996000023355531-------------------------------
Q ss_pred HHHHHHHCCHHHCCCEEEEEECCEEE-EEC---------CCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 99999726968708746742161489-838---------8998689999999999999607
Q gi|254780498|r 284 LREVKEGFDPRNFNGGVLLGVDGLVV-KGH---------GSSDAKSIFNVLGIAHNMSQNG 334 (364)
Q Consensus 284 l~~~~~~~d~~~~gGa~llGl~g~vi-k~H---------G~s~~~a~~~ai~~a~~~~~~~ 334 (364)
+-..|=-+-|||-=+-. .-| |.++..++.+||++|.++.+++
T Consensus 276 ---------~f~~~VnvTlGLP~iRtS~DHGTAfDIAGkg~A~~~S~~~Ai~~A~~~~~~r 327 (328)
T 1yxo_A 276 ---------GFGAAVNVTLGLPIIRTSVDHGTALDLAGSGRIDSGSLQVALETAYQXAASR 327 (328)
T ss_dssp ---------HTTSCEEEEESSSSCEEEECSCCCGGGTTTCCCCCHHHHHHHHHHHHHHHHC
T ss_pred ---------CCCCCEEEECCCCEEEECCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf ---------4676379946998347369976436553789899799999999999999705
No 12
>>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structural genomics, JCSG, protein structure initiative, PSI; 2.32A {Escherichia coli} (A:24-154,A:310-355)
Probab=98.87 E-value=2.3e-08 Score=72.22 Aligned_cols=139 Identities=13% Similarity=0.127 Sum_probs=96.5
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHH-HHHHC
Q ss_conf 23999974687778177799999999857991799978989999998626975155799778520177830679-99713
Q gi|254780498|r 12 VDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPAD-ALRRG 90 (364)
Q Consensus 12 m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~-AlR~k 90 (364)
..||++ +-|.| .-++++|..+.+++ -.+.+|+|+++.|+...++.+++.+.++||++++.-..++-... ..|++
T Consensus 3 pKRIVf-pEgeD---~RVLrAA~~~~~eg-Ia~PILVG~~~~I~~~a~~~gldl~~ieIIDp~~~~~~~~~a~~~~~r~r 77 (177)
T 1vmi_A 3 PARVVF-PDALD---QRVLKAAQYLHQQG-LATPILVANPFELRQFALSHGVAXDGLQVIDPHGNLAXREEFAHRWLARA 77 (177)
T ss_dssp CCEEEE-SCCSS---HHHHHHHHHHHHTT-SCEEEEESCHHHHHHHHHHHTCCCTTCEEECTTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEE-CCCCC---HHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 998997-69899---89999999999879-95899986899999999977989678889899888889999999999985
Q ss_pred CCCH----------HHHHHHHHHHCCCCEEEEEEC---CHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECCC
Q ss_conf 7642----------799999998549953999706---426788888753225567632200110558898459986132
Q gi|254780498|r 91 RNVS----------SMWRAIEAVKKNQAASVVTAG---NTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKCIILDVGA 157 (364)
Q Consensus 91 K~~S----------Sm~~a~~lvk~g~aDa~VSaG---nTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g~~vllD~GA 157 (364)
|+.| ..+.|.+||+.|+||++|+ | +|+.++.+++.++|+.|.-- -|+
T Consensus 78 kg~t~e~A~~~l~dp~yfAamMV~~G~ADglV~-G~~~sTadvLRaaLqiIG~~P~~~-----------------~~~-- 137 (177)
T 1vmi_A 78 GEKTPPDALEKLTDPLXFAAAXVSAGKADVCIA-GNLSSTANVLRAGLRIIGLQPAPX-----------------HDL-- 137 (177)
T ss_dssp GGGCCTTHHHHTTSHHHHHHHHHHTTSCSEEEE-CSSSCHHHHHHHHHHHTCBCTSCE-----------------EEC--
T ss_pred CCCCHHHHHHHHHCCHHHHHHHHHCCCCEEEEC-CCCCCHHHHHHHHHHCCCCCCCCE-----------------EEC--
T ss_conf 799789999998510355434541585026843-654557988887874058777987-----------------978--
Q ss_pred CCCCCHHHHHHHHHHHHH
Q ss_conf 777898999999999999
Q gi|254780498|r 158 TIGSTVSHMVQLSILGSF 175 (364)
Q Consensus 158 N~d~~~~~L~qfA~mGs~ 175 (364)
.--|.-++....|+..+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~ 155 (177)
T 1vmi_A 138 SRGCSVQEIIELALVAAV 155 (177)
T ss_dssp CTTCCHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHH
T ss_conf 999999999999999999
No 13
>>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound PER monomer, acyltransferase; HET: COA; 2.15A {Methanosarcina thermophila} (C:1-143,C:303-333)
Probab=98.86 E-value=1.4e-08 Score=73.63 Aligned_cols=150 Identities=16% Similarity=0.133 Sum_probs=103.1
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCH-
Q ss_conf 3111389823999974687778177799999999857991799978989999998626975155799778520177830-
Q gi|254780498|r 4 MDVLQGGNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDER- 82 (364)
Q Consensus 4 ~~~~~~~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~- 82 (364)
+..+-.++..||++ +-|.| ..+++++..+.++. -.+++|+|+++.|+..+++.++ +.++|+++++.-..++.
T Consensus 8 l~~~ak~~~krIvf-~Eg~D---~rvl~AA~~~~~~g-ia~pILvG~~~~I~~~a~~~~l--~~~eiid~~~~~~~~~~a 80 (174)
T 2af4_C 8 ISERAKKLNKTIAL-PETED---IRTLQAAAKILERG-IADIVLVGNEADIKALAGDLDL--SKAKIVDPKTYEKKDEYI 80 (174)
T ss_dssp HHHHHHHHCCEEEE-CCTTS---HHHHHHHHHHHHHT-SCEEEEESCHHHHHHHHSSCCC--TTSEEECTTSCTTHHHHH
T ss_pred HHHHHHHCCCEEEE-CCCCC---HHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCC--CCCEEECCCCCHHHHHHH
T ss_conf 99999738998998-68799---79999999999869-9169998799999999985899--867787887541568899
Q ss_pred -HHHHHHHCCCCHH----------HHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf -6799971376427----------99999998549953999706--4267888887532255676322001105588984
Q gi|254780498|r 83 -PADALRRGRNVSS----------MWRAIEAVKKNQAASVVTAG--NTGALIAMARLCLSRISGVDRPSLAAFWPTVKGK 149 (364)
Q Consensus 83 -P~~AlR~kK~~SS----------m~~a~~lvk~g~aDa~VSaG--nTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g~ 149 (364)
....+|++|+.|. .+.|.+||+.|+||++|+.- +|..++.+++.++|+.|- |+
T Consensus 81 ~~~~~~r~~KG~t~~~A~~~v~~~~~~a~~mV~~G~aD~~v~G~~~tTa~~lraal~iIg~~pk---p~----------- 146 (174)
T 2af4_C 81 NAFYELRKHKGITLENAAEIMSDYVYFAVMMAKLGEVDGVVSGAAHSSSDTLRPAVQIVKTAKK---PI----------- 146 (174)
T ss_dssp HHHHHHHGGGTCCHHHHHHHTTSHHHHHHHHHHTTSCSEEEECTTSCSHHHHHHHHHHTCBSTS---CE-----------
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHCCCCC---CE-----------
T ss_conf 9999987115999999987542377999999975863102215666648888878875304439---87-----------
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 599861327778989999999999999998
Q gi|254780498|r 150 CIILDVGATIGSTVSHMVQLSILGSFFARS 179 (364)
Q Consensus 150 ~vllD~GAN~d~~~~~L~qfA~mGs~yak~ 179 (364)
-=| .=-|+.++.+.-+.+.++-+..
T Consensus 147 -ndl----srg~~~~di~~~~~it~~qa~~ 171 (174)
T 2af4_C 147 -NDL----SRGCSDEDIVGAVAITCVQAAA 171 (174)
T ss_dssp -EEC----CTTCCHHHHHHHHHHHHHHHHH
T ss_pred -EEC----CCCCCHHHHHHHHHHHHHHHHH
T ss_conf -878----9999989999999999999985
No 14
>>1ptm_A 4-hydroxythreonine-4-phosphate dehydrogenase; crystal strucrure, PDXA, pyridoxal 5'-phosphate biosynthesis, PLP; 1.96A {Escherichia coli} (A:)
Probab=98.84 E-value=1.9e-06 Score=60.18 Aligned_cols=266 Identities=15% Similarity=0.135 Sum_probs=166.6
Q ss_pred EEEEEEECCCCC--CCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCC------------
Q ss_conf 239999746877--781777999999998579917999789899999986269751557997785201------------
Q gi|254780498|r 12 VDTISLDLMGGD--LGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSI------------ 77 (364)
Q Consensus 12 m~kIAVDaMGGD--~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI------------ 77 (364)
..+|+| .||-= -||+.++ +++.+....+++++|+.+.++...+..+... .++.++..+..
T Consensus 4 k~~IaI-T~GDPaGIGPEIi~----kal~~~~~~~~viiGd~~vl~~~~~~lg~~~-~~~~i~~~~~~~~~~~~~i~v~~ 77 (329)
T 1ptm_A 4 TQRVVI-TPGEPAGIGPDLVV----QLAQREWPVELVVCADATLLTNRAAXLGLPL-TLRPYSPNSPAQPQTAGTLTLLP 77 (329)
T ss_dssp CCEEEE-ECCSTTSSHHHHHH----HHTTSCCSSEEEEEECHHHHHHHHHHTTCCC-EEEECCTTSCCCCCCTTEEEEEE
T ss_pred CCEEEE-ECCCCCHHHHHHHH----HHHHCCCCCCEEEEECHHHHHHHHHHCCCCC-EEEECCCCCHHCCCCCCCEEEEC
T ss_conf 985999-73785073799999----9982178998799989999999999849996-27885884110314478037621
Q ss_pred -------CCCC-HHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHH------HHHCCCCCCCCCCCHHHC
Q ss_conf -------7783-0679997137642799999998549953999706-426788888------753225567632200110
Q gi|254780498|r 78 -------AMDE-RPADALRRGRNVSSMWRAIEAVKKNQAASVVTAG-NTGALIAMA------RLCLSRISGVDRPSLAAF 142 (364)
Q Consensus 78 -------~mde-~P~~AlR~kK~~SSm~~a~~lvk~g~aDa~VSaG-nTGA~la~a------~~~lg~i~Gv~RPala~~ 142 (364)
.+.. ++... +-. -.++..|++++++|++||+|.+= |-.++..++ +-+|..+-+..++..+-.
T Consensus 78 ~~~~~~i~~G~~s~~~G-~aa--~~~i~~A~~~~~~g~~daiVT~PI~K~a~~~aG~~f~GHTE~la~~~~~~~~~mml~ 154 (329)
T 1ptm_A 78 VALRAPVTAGQLAVENG-HYV--VETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVXXLA 154 (329)
T ss_dssp CCCSSCCBTTBCCTTHH-HHH--HHHHHHHHHHHHHTSCSEEEECCCCHHHHHHTTCCCCCHHHHHHHHTTCSCCEEEEE
T ss_pred CCCCCCCCCCCCCHHHH-HHH--HHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEEEE
T ss_conf 21346767676513469-999--999999999984386437984773577788558874771066553015787224555
Q ss_pred CCCCCCCEEEE--------ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE----CCCCCCCCCHH---HHHH
Q ss_conf 55889845998--------613277789899999999999999985689996589984----04555556579---9999
Q gi|254780498|r 143 WPTVKGKCIIL--------DVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN----VGTEEIKGNDV---LQES 207 (364)
Q Consensus 143 ~Pt~~g~~vll--------D~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN----iG~E~~KG~~~---~kea 207 (364)
- ..-.+.+ |+-. ..+++.+.+....-....+..+|+++|||+++- -|++-.=|+|. +.-|
T Consensus 155 ~---~~Lrv~l~T~HipL~~V~~--~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAGe~G~~G~EE~~ii~Pa 229 (329)
T 1ptm_A 155 T---EELRVALATTHLPLRDIAD--AITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHXGTEEIDTIIPV 229 (329)
T ss_dssp S---SSCEEEESSCSSCGGGHHH--HCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGGGTTCSHHHHTHHHH
T ss_pred E---CCCEEEEECCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 2---5748999544477899999--8769999999999999999852998871799614898532466651336659999
Q ss_pred HHHHHHCCCCCCCEECCCCHHHCC----CCCCCEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 999740245713200234554532----45683899755-1278899998888999999999863222088999999899
Q gi|254780498|r 208 ARLLRGECCGAFKYKGFIEANDIA----KGFVDVIVTEG-FSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKK 282 (364)
Q Consensus 208 ~~LL~~~~~~~~nF~GniEg~~i~----~g~~DVvV~DG-FtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~ 282 (364)
-+.+++. .++..|.+-++-+| .++.|+|||== =.|=|.+|+.
T Consensus 230 i~~~~~~---g~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQglip~K~l------------------------------ 276 (329)
T 1ptm_A 230 LNELRAQ---GXKLNGPLPADTLFQPKYLDNADAVLAXYHDQGLPVLKYQ------------------------------ 276 (329)
T ss_dssp HHHHHHT---TCEEEEEECHHHHSSHHHHTTCSEEEESSHHHHHHHHHTT------------------------------
T ss_pred HHHHHHC---CCCCCCCCCCCHHHHHHCCCCCCEEEECCHHCCCHHHHEE------------------------------
T ss_conf 9999876---9877899894155654202589889971410044032010------------------------------
Q ss_pred HHHHHHHHCCHHHCCCEEEEEECCEEE-EEC---------CCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 999999726968708746742161489-838---------8998689999999999999607
Q gi|254780498|r 283 SLREVKEGFDPRNFNGGVLLGVDGLVV-KGH---------GSSDAKSIFNVLGIAHNMSQNG 334 (364)
Q Consensus 283 ~l~~~~~~~d~~~~gGa~llGl~g~vi-k~H---------G~s~~~a~~~ai~~a~~~~~~~ 334 (364)
+-..|=.+-|||.=+.. .-| |-+|..++.+||++|.+++++.
T Consensus 277 ----------~f~~gVnvTlGLP~iRTS~DHGTAfdIAGkg~A~~~S~~~Ai~lA~~la~~r 328 (329)
T 1ptm_A 277 ----------GFGRGVNITLGLPFIRTSVDHGTALELAGRGKADVGSFITALNLAIKXIVNT 328 (329)
T ss_dssp ----------CSSSCEEEEESSSSEEEECSSCCCGGGTTSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCCEEEECCCCEEEECCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf ----------4675279954899557789986166650788898699999999999998627
No 15
>>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural genomics, PSI-2; 2.30A {Salmonella typhimurium LT2} (A:)
Probab=98.39 E-value=0.00019 Score=47.51 Aligned_cols=271 Identities=14% Similarity=0.114 Sum_probs=159.4
Q ss_pred CCCCEEEEEEECCCCC--CCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCC-------
Q ss_conf 3898239999746877--7817779999999985799179997898999999862697515579977852017-------
Q gi|254780498|r 8 QGGNVDTISLDLMGGD--LGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIA------- 78 (364)
Q Consensus 8 ~~~~m~kIAVDaMGGD--~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~------- 78 (364)
+..+|.+||| .||-= -||+.+++.... ........++++|+...++...+..... -.++.+...+...
T Consensus 2 ~~~~~~~iaI-T~GDPaGIGPEIi~kala~-~~~~~~~~~vi~g~~~~l~~~~~~~g~~-~~~~~i~~~~~~~~~~g~i~ 78 (330)
T 2hi1_A 2 NAXETKTVAI-TXGDPAGIGPEIIVKALSE-DGLNGAPLVVIGCLATLKRLQAKGITPN-VELRAIERVAEARFAPGIIH 78 (330)
T ss_dssp ---CCCCEEE-ECCCTTTTHHHHHHHHHTS-TTTTTCSEEEEECHHHHHHHHHTTSSCC-CEEEEESSGGGCCCCTTEEE
T ss_pred CCCCCCEEEE-ECCCCCHHHHHHHHHHHHC-CCCCCCCEEEEECHHHHHHHHHHCCCCC-CEEEECCCHHHHHCCCCEEC
T ss_conf 9889990899-8898507389999999967-3504899899978999999999769999-52543476666413442120
Q ss_pred ---CCCHHHHHHHHCCC--------CHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHH------HHHCCCCCCCCCCCHH
Q ss_conf ---78306799971376--------42799999998549953999706-426788888------7532255676322001
Q gi|254780498|r 79 ---MDERPADALRRGRN--------VSSMWRAIEAVKKNQAASVVTAG-NTGALIAMA------RLCLSRISGVDRPSLA 140 (364)
Q Consensus 79 ---mde~P~~AlR~kK~--------~SSm~~a~~lvk~g~aDa~VSaG-nTGA~la~a------~~~lg~i~Gv~RPala 140 (364)
....+...+.-.+. -.++..|++++++|++||+|.+= |-.++..++ +-+|...-|..++..+
T Consensus 79 vi~~~~~~~~~i~~G~~s~~~G~aa~~~i~~A~~~~~~g~~~alVTaPI~K~al~~aG~~f~GhTe~La~~~~~~~~~mm 158 (330)
T 2hi1_A 79 VIDEPLAQPEALEAGKVQAQAGDLAYRCVKRATELALRGDVQAIATAPLNKEALHLAGHNYPGHTELLATLTHSRDYAXV 158 (330)
T ss_dssp EEECCCSCGGGCCTTSCCHHHHHHHHHHHHHHHHHHHTTSCSEEEECCCCHHHHHHTTCCCSSHHHHHHHHTTCCCCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCHHHH
T ss_conf 23454212343222221101237899999998885201322110258630236766288733599999987327854665
Q ss_pred HCCCCCCCCEEEE--------ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE----CCCCCCCCCHH---HH
Q ss_conf 1055889845998--------613277789899999999999999985689996589984----04555556579---99
Q gi|254780498|r 141 AFWPTVKGKCIIL--------DVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN----VGTEEIKGNDV---LQ 205 (364)
Q Consensus 141 ~~~Pt~~g~~vll--------D~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN----iG~E~~KG~~~---~k 205 (364)
-.- .+..+.+ |+-. ..+++.+.+...+-....|. +++++|||+.+- -|++-.=|+|. +.
T Consensus 159 l~~---~~LrV~l~T~HipL~~v~~--~it~~~i~~~i~~~~~~l~~-~gi~~PrIaV~GLNPHAGe~G~~G~EE~~iI~ 232 (330)
T 2hi1_A 159 LYT---DKLKVIHVSTHIALRKFLD--TLSTARVETVIGIADTFLKR-VGYVKPRIAVAGVNPHAGENGLFGDEETRILT 232 (330)
T ss_dssp EEC---SSCEEEESCCSSCHHHHHH--HCCHHHHHHHHHHHHHHHHH-TTCSSCEEEEECSSGGGSSTTSCCHHHHHTHH
T ss_pred HHH---CCCEEEEEEECHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 432---1332466552244788987--54167788889999988653-00458824787516763212312257788899
Q ss_pred HHHHHHHHCCCCCCCEECCCCHHHCC----CCCCCEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999740245713200234554532----45683899755-12788999988889999999998632220889999998
Q gi|254780498|r 206 ESARLLRGECCGAFKYKGFIEANDIA----KGFVDVIVTEG-FSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLI 280 (364)
Q Consensus 206 ea~~LL~~~~~~~~nF~GniEg~~i~----~g~~DVvV~DG-FtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~ 280 (364)
-|-+.+++. .++..|.+-++-+| .++.|.|||== =.|=|.+|+.
T Consensus 233 Pai~~~~~~---g~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQglip~K~l---------------------------- 281 (330)
T 2hi1_A 233 PAITDARAK---GXDVYGPCPPDTVFLQAYEGQYDXVVAXYHDQGHIPLKLL---------------------------- 281 (330)
T ss_dssp HHHHHHHTT---TCEEEEEECHHHHHHHHHTTSCSEEEESSHHHHHHHHHHC----------------------------
T ss_pred HHHHHHHHC---CCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCEEC----------------------------
T ss_conf 999999963---9976799286222430234548889995245434000121----------------------------
Q ss_pred HHHHHHHHHHCCHHHCCCEEEEEECCEEE-EEC---------CCCCHHHHHHHHHHHHHH
Q ss_conf 99999999726968708746742161489-838---------899868999999999999
Q gi|254780498|r 281 KKSLREVKEGFDPRNFNGGVLLGVDGLVV-KGH---------GSSDAKSIFNVLGIAHNM 330 (364)
Q Consensus 281 ~~~l~~~~~~~d~~~~gGa~llGl~g~vi-k~H---------G~s~~~a~~~ai~~a~~~ 330 (364)
.-..|=.+-|||-=+.. .-| |.+++.++.+||++|.++
T Consensus 282 ------------~f~~~VnvtlGLP~iRTS~DHGTAfDIAGkg~A~~~s~~~Ai~lA~~l 329 (330)
T 2hi1_A 282 ------------GFYDGVNITAGLPFIRTSADHGTAFDIAWTGKAKSESXAVSIKLAXQL 329 (330)
T ss_dssp ------------C-CCSEEEEETSSSEEEEESCCCCTTTTTTTCCCCHHHHHHHHHHHHH
T ss_pred ------------CCCCCEEEECCCCEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf ------------467667996599934768997426655068988859999999999985
No 16
>>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, PTB, nysgxrc; 2.40A {Enterococcus faecalis V583} (A:1-94,A:247-279)
Probab=97.06 E-value=0.0013 Score=42.28 Aligned_cols=97 Identities=20% Similarity=0.237 Sum_probs=70.2
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEE-EEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHC
Q ss_conf 2399997468777817779999999985799179-997898999999862697515579977852017783067999713
Q gi|254780498|r 12 VDTISLDLMGGDLGARDLILGASKFLEAHPRIRF-LMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRRG 90 (364)
Q Consensus 12 m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~i-iLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR~k 90 (364)
|+|+||= ...| ..+++++..+.++. -+++ +|+||+++|+.. .+.++|+|+++. .
T Consensus 1 ~krvAVa-~a~D---~~~L~Av~~A~e~g-i~~p~iLvGd~~~I~~~-------a~~~eiI~~~~~-------~------ 55 (127)
T 1yco_A 1 MITVSIA-GGSQ---PEILQLVKKALKEA-EQPLQFIVFDTNENLDT-------ENLWKYVHCSDE-------A------ 55 (127)
T ss_dssp CEEEEEE-TCCS---HHHHHHHHHHHHHC-CSCEEEEEEESSCCCCS-------SCCSEEEECSSH-------H------
T ss_pred CEEEEEC-CCCC---HHHHHHHHHHHHCC-CCCCEEEECCCHHHCCC-------CCCCEEECCCCC-------H------
T ss_conf 9699991-6899---89999999999769-98877994282330630-------028779879995-------9------
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 7642799999998549953999706--4267888887532255676322001
Q gi|254780498|r 91 RNVSSMWRAIEAVKKNQAASVVTAG--NTGALIAMARLCLSRISGVDRPSLA 140 (364)
Q Consensus 91 K~~SSm~~a~~lvk~g~aDa~VSaG--nTGA~la~a~~~lg~i~Gv~RPala 140 (364)
..-..|+++|++|+||.+.- | +|..+|.. +|.+-.|+.-|-+-
T Consensus 56 ---eAA~~AV~lVr~G~Ad~LMK-G~i~T~~lLka---VL~ke~GLk~pvvl 100 (127)
T 1yco_A 56 ---AVAQEAVSLVATGQAQILLK-GIIQTHTLLKE---MLKSEHQLKVPVVL 100 (127)
T ss_dssp ---HHHHHHHHHHHSTTCSEEEE-CSSCHHHHHHH---HTCTTTCCSSCEEE
T ss_pred ---HHHHHHHHHHHCCCCCEEEE-CCCCCHHHHHH---HHHHHCCCCCCEEE
T ss_conf ---99999999997799877975-89894676667---88862367875798
No 17
>>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} (A:1-90,A:180-225)
Probab=84.39 E-value=0.48 Score=26.07 Aligned_cols=64 Identities=11% Similarity=0.127 Sum_probs=36.9
Q ss_pred CEEEEECCHH---HHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf 1799978989---9999986269751557997785201778306799971376427999999985499539997064267
Q gi|254780498|r 43 IRFLMYGDAK---VCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGA 119 (364)
Q Consensus 43 i~iiLvGdee---~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR~kK~~SSm~~a~~lvk~g~aDa~VSaGnTGA 119 (364)
-.+.++|-.. .+......+.- ..++++++... |....++|. .++.+.+|++|+||+.||
T Consensus 14 PrIw~vsiSRL~~l~~~Iapey~~-~A~i~iv~~gF-----edAv~~ir~------------~~~~~~~DviVAAGSNGA 75 (136)
T 2pju_A 14 PVIWTVSVTRLFELFRDISLEFDH-LANITPIQLGF-----EKAVTYIRK------------KLANERCDAIIAAGSNGA 75 (136)
T ss_dssp CEEEEECCHHHHHHHHHHHTTTTT-TCEEEEECCCH-----HHHHHHHHH------------HTTTSCCSEEEEEHHHHH
T ss_pred CEEEEEEHHHHHHHHHHHHHHHCC-CCEEEEEECCH-----HHHHHHHHH------------HHHCCCCCEEEECCHHHH
T ss_conf 889998789999999999987457-75599871747-----899999999------------986499869997966899
Q ss_pred HHHHH
Q ss_conf 88888
Q gi|254780498|r 120 LIAMA 124 (364)
Q Consensus 120 ~la~a 124 (364)
++..-
T Consensus 76 yLr~~ 80 (136)
T 2pju_A 76 YLKSR 80 (136)
T ss_dssp HHHTT
T ss_pred HHHHH
T ss_conf 99985
No 18
>>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} (A:)
Probab=75.18 E-value=5.6 Score=19.36 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=43.5
Q ss_pred CCCCCCEEEEEECCCCCCCCCHHH-HHHHHHHHHCCCCCCCEECCC--CHHHC-------C-CCCCCEEEECCHHH
Q ss_conf 689996589984045555565799-999999740245713200234--55453-------2-45683899755127
Q gi|254780498|r 181 AGINCPSIGLLNVGTEEIKGNDVL-QESARLLRGECCGAFKYKGFI--EANDI-------A-KGFVDVIVTEGFSG 245 (364)
Q Consensus 181 ~~~~~PrVgLLNiG~E~~KG~~~~-kea~~LL~~~~~~~~nF~Gni--Eg~~i-------~-~g~~DVvV~DGFtG 245 (364)
.-..+|||++|++|.|-++-.+.. .--..+|++... +..+.+.+ +..+| + .+.+|+|+|-|=+|
T Consensus 6 ~v~~~prv~ii~tGdE~G~i~D~n~~~l~~~l~~~G~-~v~~~~~v~Dd~~~i~~~i~~~~~~~~~DivittGG~g 80 (172)
T 1mkz_A 6 TEFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGH-HVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTG 80 (172)
T ss_dssp SSCCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTC-EEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCS
T ss_pred CCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCC-EEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCEEE
T ss_conf 7876868999998488887777739999999998599-46665672898899999999987536842898567786
No 19
>>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold, cytoplasm, gluconeogenesis, glycolysis, structural genomics; HET: G6Q; 1.65A {Staphylococcus aureus subsp} PDB: 3ifs_A* (A:1-49,A:223-262,A:387-415)
Probab=64.07 E-value=3.9 Score=20.33 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHCCCCCCCEECCCCHHHCCC
Q ss_conf 7999999997402457132002345545324
Q gi|254780498|r 202 DVLQESARLLRGECCGAFKYKGFIEANDIAK 232 (364)
Q Consensus 202 ~~~kea~~LL~~~~~~~~nF~GniEg~~i~~ 232 (364)
+.++.|++.|.+.....=+|.||||.++|-.
T Consensus 28 ~~V~~ah~~L~~ktGaGnDFLG~~e~~~l~g 58 (118)
T 3ff1_A 28 EIVKSIHKTIHEGTGAGSDFLGNIEAXXIGA 58 (118)
T ss_dssp HHHHHHHHHHHHTCSTTGGGCHCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHCCH
T ss_conf 9999999999826688744467576651468
No 20
>>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} (C:152-231)
Probab=63.12 E-value=5.5 Score=19.37 Aligned_cols=33 Identities=33% Similarity=0.395 Sum_probs=26.9
Q ss_pred ECCCCHHHCCCCCCCEEEECCHHHHHHHHHHHH
Q ss_conf 023455453245683899755127889999888
Q gi|254780498|r 222 KGFIEANDIAKGFVDVIVTEGFSGNIAIKAAEG 254 (364)
Q Consensus 222 ~GniEg~~i~~g~~DVvV~DGFtGNi~LKt~EG 254 (364)
--.-+..||..|..||+|||.=.--.+||-++.
T Consensus 40 ~s~~~~~dip~~~fDVvVTD~sCP~~~lk~a~a 72 (80)
T 1kzy_C 40 HSSAHNKDIALGVFDVVVTDPSCPASVLKCAEA 72 (80)
T ss_dssp ESSSSCCCSCGGGCSEEEECTTCCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 653322224678750899828985899999987
No 21
>>2g4r_A MOGA, molybdopterin biosynthesis MOG protein; anomalous substructure of MOGA, biosynthetic protein; 1.92A {Mycobacterium tuberculosis} (A:)
Probab=62.09 E-value=8.2 Score=18.29 Aligned_cols=62 Identities=19% Similarity=0.073 Sum_probs=39.1
Q ss_pred CCCCEEEEEECCCCCCCCCHH---HHHHHHHHHHCCCCCCCEECCC--CHHHCC------CCCCCEEEECCHHH
Q ss_conf 999658998404555556579---9999999740245713200234--554532------45683899755127
Q gi|254780498|r 183 INCPSIGLLNVGTEEIKGNDV---LQESARLLRGECCGAFKYKGFI--EANDIA------KGFVDVIVTEGFSG 245 (364)
Q Consensus 183 ~~~PrVgLLNiG~E~~KG~~~---~kea~~LL~~~~~~~~nF~Gni--Eg~~i~------~g~~DVvV~DGFtG 245 (364)
+.+|||+++.+|.|-..|... -.--.++|++.. .++.+.+.+ +...|. ...+|+|||-|=+|
T Consensus 1 ~~~~rv~ii~~GdEi~~g~~~d~n~~~l~~~l~~~G-~~v~~~~~v~Dd~~~I~~~i~~~~~~~Dliit~GG~g 73 (160)
T 2g4r_A 1 MSTRSARIVVVSSRAAAGVYTDDCGPIIAGWLEQHG-FSSVQPQVVADGNPVGEALHDAVNAGVDVIITSGGTG 73 (160)
T ss_dssp --CCCEEEEEECHHHHTTSSCCCHHHHHHHHHHHTT-CCCCCCEEECSSHHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred CCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCC-CCCEEEEEECHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 998679999946833048848846999999998779-8102557504176789999999976999999747536
No 22
>>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* (A:233-392)
Probab=60.95 E-value=11 Score=17.52 Aligned_cols=69 Identities=7% Similarity=-0.012 Sum_probs=34.6
Q ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCC----------------------CCCEECCCCHHHC--CCCCCCEEE
Q ss_conf 9965899840455555657999999997402457----------------------1320023455453--245683899
Q gi|254780498|r 184 NCPSIGLLNVGTEEIKGNDVLQESARLLRGECCG----------------------AFKYKGFIEANDI--AKGFVDVIV 239 (364)
Q Consensus 184 ~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~----------------------~~nF~GniEg~~i--~~g~~DVvV 239 (364)
++|+|....--.++.||.+..-++++.|++.... ++.|.|++...++ +-..+||+|
T Consensus 8 ~~~~i~~~g~~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~g~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i 87 (160)
T 2x0d_A 8 KEKIILVYGRPSVKRNAFTLIVEALKIFVQKYDRSNEWKIISVGEKHKDIALGKGIHLNSLGKLTLEDYADLLKRSSIGI 87 (160)
T ss_dssp CCSEEEEEECTTCGGGCHHHHHHHHHHHHHHCTTGGGCEEEEEESCCCCEEEETTEEEEEEESCCHHHHHHHHHHCCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHCCCCCEEEEECCCCHHHHHHHHHHCCEEE
T ss_conf 77479996334653215199999889888736778549999678767544528886299932689999999999649899
Q ss_pred ECCHHHHHHHHHH
Q ss_conf 7551278899998
Q gi|254780498|r 240 TEGFSGNIAIKAA 252 (364)
Q Consensus 240 ~DGFtGNi~LKt~ 252 (364)
+-......-+|..
T Consensus 88 ~~~~~e~~~~~~~ 100 (160)
T 2x0d_A 88 SLXISPHPSYPPL 100 (160)
T ss_dssp CCCSSSSCCSHHH
T ss_pred ECCCCCCCCHHHH
T ss_conf 8325566766899
No 23
>>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus HB8} (A:106-217)
Probab=60.59 E-value=9.1 Score=18.02 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHC
Q ss_conf 2799999998549953999--7064267888887532
Q gi|254780498|r 94 SSMWRAIEAVKKNQAASVV--TAGNTGALIAMARLCL 128 (364)
Q Consensus 94 SSm~~a~~lvk~g~aDa~V--SaGnTGA~la~a~~~l 128 (364)
..++.-..+.++|+...+| |+||||.-+|.+-..+
T Consensus 7 ~A~~~i~~a~~~g~~~~iie~SsGN~g~alA~~a~~~ 43 (112)
T 1x1q_A 7 NTLGQALLARRXGKRRVIAETGAGQHGVSVATVAALF 43 (112)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 9999998776518765110445316779999999976
No 24
>>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate assisted catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* (A:223-410)
Probab=56.59 E-value=13 Score=17.04 Aligned_cols=16 Identities=6% Similarity=0.084 Sum_probs=10.4
Q ss_pred CCCHHHHHHHHHHHHH
Q ss_conf 9986899999999999
Q gi|254780498|r 314 SSDAKSIFNVLGIAHN 329 (364)
Q Consensus 314 ~s~~~a~~~ai~~a~~ 329 (364)
..|..+++.+|.....
T Consensus 153 ~~d~~~~a~~i~~l~~ 168 (188)
T 3c48_A 153 GHSPHAWADALATLLD 168 (188)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHC
T ss_conf 9999999999999986
No 25
>>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} (A:79-187)
Probab=54.10 E-value=14 Score=16.90 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHCCC
Q ss_conf 2799999998549953999--706426788888753225
Q gi|254780498|r 94 SSMWRAIEAVKKNQAASVV--TAGNTGALIAMARLCLSR 130 (364)
Q Consensus 94 SSm~~a~~lvk~g~aDa~V--SaGnTGA~la~a~~~lg~ 130 (364)
...+.-..+.++|....+| |+||||.-++..-..+|.
T Consensus 7 ~a~~~i~~~~~~G~~~~vv~aSsGN~g~alA~~~~~~G~ 45 (109)
T 1v8z_A 7 NAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGM 45 (109)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 479999987651886245201045789999999997388
No 26
>>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} (A:)
Probab=52.25 E-value=15 Score=16.60 Aligned_cols=62 Identities=16% Similarity=0.151 Sum_probs=37.4
Q ss_pred CCCCEEEEEECCCCCCCCCHHHHHH-HHHHHHCCCCCCCEECCCC--HHH-------CC-CCCCCEEEECCHHH
Q ss_conf 9996589984045555565799999-9997402457132002345--545-------32-45683899755127
Q gi|254780498|r 183 INCPSIGLLNVGTEEIKGNDVLQES-ARLLRGECCGAFKYKGFIE--AND-------IA-KGFVDVIVTEGFSG 245 (364)
Q Consensus 183 ~~~PrVgLLNiG~E~~KG~~~~kea-~~LL~~~~~~~~nF~GniE--g~~-------i~-~g~~DVvV~DGFtG 245 (364)
...|||+++++|.|.++=.+..-.. ..+|++... +..+.+-+- ... .. .+.+|+|+|-|=+|
T Consensus 11 ~~~~rv~ii~~GdE~G~~~d~n~~~l~~~l~~~G~-~v~~~~~v~Dd~~~i~~~i~~~~~~~~~dlVittGG~g 83 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGH-KVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTG 83 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTC-EEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCS
T ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCC-EEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 77766999997188887758409999999997799-56786563587999999999875256675899843555
No 27
>>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} (A:)
Probab=48.25 E-value=18 Score=16.21 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=37.7
Q ss_pred CCCCCCEEEEEECCCCCCCCCH---HHHHHHHHHHHCC--CCCCCEECCC--CHH-------HCC-CCCCCEEEECCHHH
Q ss_conf 6899965899840455555657---9999999974024--5713200234--554-------532-45683899755127
Q gi|254780498|r 181 AGINCPSIGLLNVGTEEIKGND---VLQESARLLRGEC--CGAFKYKGFI--EAN-------DIA-KGFVDVIVTEGFSG 245 (364)
Q Consensus 181 ~~~~~PrVgLLNiG~E~~KG~~---~~kea~~LL~~~~--~~~~nF~Gni--Eg~-------~i~-~g~~DVvV~DGFtG 245 (364)
.-...|||+++++|.|-..|.- .-.--..+|++.. ..++.+.+-+ +.. +.. .+.+|+|||-|=+|
T Consensus 10 ~v~~~~rv~ii~~GdEl~~g~i~d~n~~~l~~~l~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlIittGG~g 89 (189)
T 1jlj_A 10 NHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTG 89 (189)
T ss_dssp ---CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 67985789999968787478637775999999998525489379999997897899999999985535887899788667
No 28
>>3k93_A Phage related exonuclease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.15A {Haemophilus somnus 129PT} (A:)
Probab=45.60 E-value=7.8 Score=18.43 Aligned_cols=58 Identities=24% Similarity=0.283 Sum_probs=40.2
Q ss_pred HHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCC--HHHCCCCCCCEEEECC
Q ss_conf 9856899965899840455555657999999997402457132002345--5453245683899755
Q gi|254780498|r 178 RSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIE--ANDIAKGFVDVIVTEG 242 (364)
Q Consensus 178 k~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniE--g~~i~~g~~DVvV~DG 242 (364)
..++|.+. -.| | .+-.||+.+..+|-+|.... ..+.|.-|.| .+++++|.||+.+-+.
T Consensus 47 ~~lfg~~~-f~g--n--KyteKG~~lEeqaI~Lsg~v--rg~~~~KNteRr~Nd~iTGEcDi~~~~~ 106 (223)
T 3k93_A 47 FDLFGYNA-FEG--N--KYTQKGNELEEQAIKLSGVT--RGLALKKNTERRENEFITGECDIYVPSR 106 (223)
T ss_dssp HHHHCCCS-CCC--C--HHHHHHHHTHHHHHHHHHHH--HTCCCCCCCCCEECSSEEECCSEEEGGG
T ss_pred HHHHCCCC-CCC--C--HHHHHHHHCCHHHHHHHHHH--HCCCEEECCEEECCCCEEECCEEEECCC
T ss_conf 89718985-534--1--99885553079999999999--7991475860874861243542487588
No 29
>>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structural protein; 2.41A {Rattus norvegicus} (A:1-21,A:182-334)
Probab=42.60 E-value=21 Score=15.66 Aligned_cols=14 Identities=21% Similarity=0.626 Sum_probs=6.3
Q ss_pred CCCCEEEEEECCCC
Q ss_conf 99965899840455
Q gi|254780498|r 183 INCPSIGLLNVGTE 196 (364)
Q Consensus 183 ~~~PrVgLLNiG~E 196 (364)
...|||+++++|.|
T Consensus 19 ~~~prv~Ii~tGdE 32 (174)
T 2fts_A 19 MTPPVVAVMSTGNE 32 (174)
T ss_dssp HSCCCEEEEEECTT
T ss_pred CCCCEEEEEECCCC
T ss_conf 69910899952776
No 30
>>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} (A:)
Probab=41.80 E-value=11 Score=17.61 Aligned_cols=61 Identities=16% Similarity=0.085 Sum_probs=33.0
Q ss_pred CCCEEEEEECCCCCCCCCHH------HHHH-HHHHHHCCCCCCCEECCCC--H-------HHCCCCCCCEEEECCHHH
Q ss_conf 99658998404555556579------9999-9997402457132002345--5-------453245683899755127
Q gi|254780498|r 184 NCPSIGLLNVGTEEIKGNDV------LQES-ARLLRGECCGAFKYKGFIE--A-------NDIAKGFVDVIVTEGFSG 245 (364)
Q Consensus 184 ~~PrVgLLNiG~E~~KG~~~------~kea-~~LL~~~~~~~~nF~GniE--g-------~~i~~g~~DVvV~DGFtG 245 (364)
.+|||+++.+|.|--.|... ..+. ..+|++.. ....+.+.+. . ++.++..+|+|||-|=+|
T Consensus 4 ~~~rv~ii~tGdEi~~g~~~d~~g~~~~~~~~~~l~~~G-~~~~~~~iv~Dd~~~i~~~l~~~~~~~~DlVittGG~g 80 (167)
T 2g2c_A 4 XHIKSAIIVVSDRISTGTRENKALPLLQRLXSDELQDYS-YELISEVVVPEGYDTVVEAIATALKQGARFIITAGGTG 80 (167)
T ss_dssp CEEEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CE-EEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred CEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 512899999788441577457884899999999999789-37999984174288999999999856999999627766
No 31
>>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} (A:91-175)
Probab=40.52 E-value=23 Score=15.46 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=35.4
Q ss_pred HHHHHHHHHCCHHHCCCEEEEEECCEE-EEECCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 999999972696870874674216148-98388998689999999999999607
Q gi|254780498|r 282 KSLREVKEGFDPRNFNGGVLLGVDGLV-VKGHGSSDAKSIFNVLGIAHNMSQNG 334 (364)
Q Consensus 282 ~~l~~~~~~~d~~~~gGa~llGl~g~v-ik~HG~s~~~a~~~ai~~a~~~~~~~ 334 (364)
+.|+.+.+++-++ +-.|+||-| |+++---+..++.|||..+.......
T Consensus 22 ~iL~~Lgk~~~FE-----IAVG~NGrVWvk~~~~~~tiai~~aI~~~~~~~~~~ 70 (85)
T 2ja9_A 22 PLLKVLAAHTKFE-----VAIGLNGKIWVKCEELSNTLACYRTIMECCQKNDTA 70 (85)
T ss_dssp CHHHHHHTTCCCE-----EEEETTTEEEEECSSHHHHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHCCCCCEE-----EEEECCCEEEEECCCHHHHHHHHHHHHHHHHHCCHH
T ss_conf 1888750368869-----999448289997798357999999999998667676
No 32
>>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, protein folding, ATPase; 2.60A {Thermoplasma acidophilum} (A:214-366)
Probab=39.47 E-value=24 Score=15.36 Aligned_cols=66 Identities=15% Similarity=0.070 Sum_probs=38.5
Q ss_pred CCCCCCEEEEEECCCCCCCCCHH-------HHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHHHHH
Q ss_conf 68999658998404555556579-------999999974024571320023455453245683899755127889999
Q gi|254780498|r 181 AGINCPSIGLLNVGTEEIKGNDV-------LQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKA 251 (364)
Q Consensus 181 ~~~~~PrVgLLNiG~E~~KG~~~-------~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~LKt 251 (364)
-.+++|||+|||..-|..|.... ..+-.++.++.. +|.-+ --+.|.+-.+|||+|.+=..+.+|..
T Consensus 16 k~i~~~kIlll~~~le~~~~e~~~~~~~~~~~~~~~~~~~E~----~~~~~-~v~~I~~~g~~vvi~~~~I~~~al~~ 88 (153)
T 1a6d_A 16 DVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQET----NTFKQ-MVEKIKKSGANVVLCQKGIDDVAQHY 88 (153)
T ss_dssp SEEEEEEEEEECSCBSCCCCSSCCEEEECSTTHHHHHHHHHH----HHHHH-HHHHHHHTTCCEEEESSCBCHHHHHH
T ss_pred CCCCCCEEEEECCHHHHHHHHHHHEEEEECCHHHHHHHHHHH----HHHHH-HHHHHHHCCCCEEEECCCCCHHHHHH
T ss_conf 134655477631201222355541012000014889999986----33234-78999732887899878876389999
No 33
>>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} (A:1-21,A:180-326)
Probab=38.40 E-value=21 Score=15.78 Aligned_cols=63 Identities=17% Similarity=0.234 Sum_probs=31.3
Q ss_pred CCCCCCEEEEEECCCCC-------CCCC---HHHHHHHHHHHHCCCCCCCEECCC--CHHHCC------CCCCCEEEECC
Q ss_conf 68999658998404555-------5565---799999999740245713200234--554532------45683899755
Q gi|254780498|r 181 AGINCPSIGLLNVGTEE-------IKGN---DVLQESARLLRGECCGAFKYKGFI--EANDIA------KGFVDVIVTEG 242 (364)
Q Consensus 181 ~~~~~PrVgLLNiG~E~-------~KG~---~~~kea~~LL~~~~~~~~nF~Gni--Eg~~i~------~g~~DVvV~DG 242 (364)
|.+. |||+++++|.|= .+|. ..-.-...+|++.. .+..+.+-+ +.++|. ...+|+||+-|
T Consensus 19 ~~~r-prV~IistGdElv~~~~~~~~G~i~dsn~~~l~~~L~~~G-~~v~~~~~v~Dd~~~I~~~l~~~~~~~DlVIttG 96 (168)
T 1uz5_A 19 FKIK-PKVAVISTGNEIVPPGNELKPGQIYDINGRALCDAINELG-GEGIFMGVARDDKESLKALIEKAVNVGDVVVISG 96 (168)
T ss_dssp CCCC-CEEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHHHT-SEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEEC
T ss_pred CCCC-CEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 6995-5189995045656889888877414532255566676459-6114310033067776665420332342479725
Q ss_pred HHH
Q ss_conf 127
Q gi|254780498|r 243 FSG 245 (364)
Q Consensus 243 FtG 245 (364)
=+|
T Consensus 97 G~g 99 (168)
T 1uz5_A 97 GAS 99 (168)
T ss_dssp CC-
T ss_pred CCC
T ss_conf 734
No 34
>>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, ATP-binding; 2.30A {Thermoplasma acidophilum} (A:)
Probab=38.03 E-value=25 Score=15.21 Aligned_cols=65 Identities=15% Similarity=0.094 Sum_probs=37.7
Q ss_pred CCCCCCEEEEEECCCCCCCCCHHHH-------HHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHHHH
Q ss_conf 6899965899840455555657999-------999997402457132002345545324568389975512788999
Q gi|254780498|r 181 AGINCPSIGLLNVGTEEIKGNDVLQ-------ESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIK 250 (364)
Q Consensus 181 ~~~~~PrVgLLNiG~E~~KG~~~~k-------ea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~LK 250 (364)
-.+++|||+|||..-|..|...-.+ +-.++.++. . +|.-+ =-..|.+-.+|||+|.+=..+.++.
T Consensus 17 k~i~~~kI~ll~~~l~~~~~~~~~~~~~~~~~~l~~~~~~E-~---~~~~~-~v~~I~~~g~~vVi~~k~I~~~~~~ 88 (159)
T 1ass_A 17 DVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQE-T---NTFKQ-MVEKIKKSGANVVLCQKGIDDVAQH 88 (159)
T ss_dssp SEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHH-H---HHHHH-HHHHHHHTTCSEEEESSCBCHHHHH
T ss_pred CCCCCCEEEEEECCCCCCCCCCCCCEEECCHHHHHHHHHHH-H---HHHHH-HHHHHHCCCCCEEEEECCCCHHHHH
T ss_conf 65168639999254231344456625526999999999999-9---99999-9999860588579960662789999
No 35
>>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} (A:218-368)
Probab=37.33 E-value=26 Score=15.15 Aligned_cols=65 Identities=18% Similarity=0.159 Sum_probs=37.4
Q ss_pred CCCCCCEEEEEECCCCCCCCCH-------HHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHHHH
Q ss_conf 6899965899840455555657-------999999997402457132002345545324568389975512788999
Q gi|254780498|r 181 AGINCPSIGLLNVGTEEIKGND-------VLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIK 250 (364)
Q Consensus 181 ~~~~~PrVgLLNiG~E~~KG~~-------~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~LK 250 (364)
-.+++|||+|||..-|..|... -..+-.++.++.. .-+... -..|.+-.+|||+|.+=..+.++.
T Consensus 15 k~i~n~kI~ll~~~l~~~~~~~~~~~~~~s~~~~~~~~~~E~-~~~~~~----v~~i~~~g~nvvi~~~~I~~~a~~ 86 (151)
T 1q3q_A 15 KRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEE-KMLKDM----VDHIAQTGANVVFVQKGIDDLAQH 86 (151)
T ss_dssp SEESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHH-HHHHHH----HHHHHHHTCCEEEESSCBCHHHHH
T ss_pred CCCCCCEEEECCHHHHHHHHHHCCEEEECCHHHHHHHHHHHH-HHHHHH----HHHHHHCCCCEEEEECCCCHHHHH
T ss_conf 430235012104023332343110233057999999999988-888999----999875376569863575089999
No 36
>>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCSG, PSI-2, midwest center for structural genomics; 2.00A {Thermoplasma acidophilum} (A:)
Probab=35.85 E-value=10 Score=17.72 Aligned_cols=61 Identities=23% Similarity=0.350 Sum_probs=34.6
Q ss_pred CCCEEEEEECCCCCCCCCHHHHHH---HHHHHHCCCCCCCEECCC--CHHHC------CCCCCCEEEECCHHH
Q ss_conf 996589984045555565799999---999740245713200234--55453------245683899755127
Q gi|254780498|r 184 NCPSIGLLNVGTEEIKGNDVLQES---ARLLRGECCGAFKYKGFI--EANDI------AKGFVDVIVTEGFSG 245 (364)
Q Consensus 184 ~~PrVgLLNiG~E~~KG~~~~kea---~~LL~~~~~~~~nF~Gni--Eg~~i------~~g~~DVvV~DGFtG 245 (364)
+.|||+++.+|.|-..|...-... -++|++... .+.+.+.+ +...| ....+|+|+|-|=+|
T Consensus 2 ~~~rv~ii~~GdEl~~G~~~D~n~~~l~~~l~~~G~-~v~~~~~v~D~~~~i~~~l~~~~~~~DliittGG~g 73 (172)
T 3kbq_A 2 NAKNASVITVGNEILKGRTVNTNAAFIGNFLTYHGY-QVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLG 73 (172)
T ss_dssp --CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTC-EEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCS
T ss_pred CCCCEEEEEECCCCCCCEEEEHHHHHHHHHHHHCCC-CEEEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 986689999751151770466199999999998799-177999989849999999999873488999817886
No 37
>>1su8_A CODH 2, carbon monoxide dehydrogenase 2; nickel, cluster C, oxidoreductase; HET: NFS; 1.10A {Carboxydothermus hydrogenoformans} (A:1-25,A:236-408)
Probab=35.82 E-value=27 Score=15.00 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=22.1
Q ss_pred HHHHHHHHHCCCCCCCEECCC-CHHH-------------------CCCCCCCEEEECC
Q ss_conf 999999740245713200234-5545-------------------3245683899755
Q gi|254780498|r 205 QESARLLRGECCGAFKYKGFI-EAND-------------------IAKGFVDVIVTEG 242 (364)
Q Consensus 205 kea~~LL~~~~~~~~nF~Gni-Eg~~-------------------i~~g~~DVvV~DG 242 (364)
++-..++++.....||.+|-+ .++| +++|.+|++|.|-
T Consensus 64 ~el~~~ak~~gakGI~I~G~cCTg~Eml~~~g~p~~G~~~~qe~~i~tG~~d~iVvd~ 121 (198)
T 1su8_A 64 KEMENEARAAGATGINVVGICCTGNEVLMRHGIPACTHSVSQEMAMITGALDAMILDY 121 (198)
T ss_dssp HHTHHHHHHTTCSCEEEEEEHHHHHHHHHHHCCCEEECGGGTHHHHHTSCEEEEEECS
T ss_pred HHHHHHHHHCCCCCEEEEEEECCHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCEEEEC
T ss_conf 9999999974799549998725588876315874012758889864678767389865
No 38
>>1xmx_A Hypothetical protein VC1899; alpha-beta, MCSG, protein structure initiative, structural genomics, PSI, midwest center for structural genomics; 2.10A {Vibrio cholerae} (A:1-141)
Probab=33.57 E-value=30 Score=14.77 Aligned_cols=123 Identities=9% Similarity=-0.012 Sum_probs=57.2
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCH------HHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHH
Q ss_conf 2399997468777817779999999985799179997898------9999998626975155799778520177830679
Q gi|254780498|r 12 VDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDA------KVCLPILDSHPLLKERSCFHHCEVSIAMDERPAD 85 (364)
Q Consensus 12 m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGde------e~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~ 85 (364)
=||+-|=..|.| |..++.++. ++...|+ +++|+..+ +.++..+.+.+..-....+.+..++ ..
T Consensus 2 ~M~vli~~iG~~--~~~~~~~i~-~~~~~~d-~v~li~s~~~~~~~~~l~~~l~~~~~~~~~~~i~d~~d~-------~~ 70 (141)
T 1xmx_A 2 AMAIHVGIIDQD--PVRLVTPLL-DHRTVSR-HIIFIGDHTQTVIYQRLSDVLNKRNISTDFFEIPAGSNT-------SA 70 (141)
T ss_dssp TTEEEEEECCSS--CHHHHHHHH-STTCCCC-EEEEEECGGGHHHHHHHHHHHHHTTCEEEEEECCSSSCH-------HH
T ss_pred CEEEEEEEECCC--CHHHHHHHH-CCCCCCC-EEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCH-------HH
T ss_conf 618999996377--221201755-4789986-799997732588999999999865986179845764477-------99
Q ss_pred HHHHCCCCHHHHHHHHHHHCCCCEEEEE-ECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECC
Q ss_conf 9971376427999999985499539997-0642678888875322556763220011055889845998613
Q gi|254780498|r 86 ALRRGRNVSSMWRAIEAVKKNQAASVVT-AGNTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKCIILDVG 156 (364)
Q Consensus 86 AlR~kK~~SSm~~a~~lvk~g~aDa~VS-aGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g~~vllD~G 156 (364)
..+ -+...++..++...+..|. .|-|-. |..+.+...+.-+. -...+-+.++..++++--
T Consensus 71 ~~~------~i~~~i~~~~~~~~~v~vniTgGtk~-ms~a~~~aa~~~~~----~~~Yv~~~~~~~~~~~p~ 131 (141)
T 1xmx_A 71 IKS------AIRELAETLKARGEEVKFNASCGLRH-RLLSAYEVFRSYHW----PIFVVEPNSDCLCWLYPE 131 (141)
T ss_dssp HHH------HHHHHHHHHHHHTCEEEEECSSSCHH-HHHHHHHHHHHTTC----CEEEECTTTCEEEEEEST
T ss_pred HHH------HHHHHHHHHHHCCCCEEEECCCCHHH-HHHHHHHHHHHCCC----CEEEEECCCCEEEEECCC
T ss_conf 999------99999998651288489982676789-89999999996299----679993798479997788
No 39
>>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, protein folding, ATPase; 2.60A {Thermoplasma acidophilum} (B:216-367)
Probab=33.56 E-value=30 Score=14.77 Aligned_cols=66 Identities=17% Similarity=0.084 Sum_probs=37.8
Q ss_pred CCCCCCEEEEEECCCCCCCCCH-------HHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHHHHH
Q ss_conf 6899965899840455555657-------9999999974024571320023455453245683899755127889999
Q gi|254780498|r 181 AGINCPSIGLLNVGTEEIKGND-------VLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKA 251 (364)
Q Consensus 181 ~~~~~PrVgLLNiG~E~~KG~~-------~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~LKt 251 (364)
-.+++|||++|+..-|..|... -..+-.++.++.. ..+ .. --..|..-.+|||+|.+=..+.++.-
T Consensus 15 k~i~n~kI~ll~~~Le~~k~~~~~~~~~~~~~~~~~~~~~E~-~~~--~~--~v~~I~~~g~~vii~~~~I~~~a~~~ 87 (152)
T 1a6d_B 15 DVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEE-NML--RE--MVDKIKSVGANVVITQKGIDDMAQHY 87 (152)
T ss_dssp SEEEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHH-HHH--HH--HHHHHHHTTCCEEEESSCBCHHHHHH
T ss_pred CCCCCCEEECCCCCHHHHHHHHCCEEECCCCHHHHHHHHHHH-HHH--HH--HHHHHHHHCCEEEECCCCCCHHHHHH
T ss_conf 220011453045411343210001110267347888888777-777--77--77778741554785165610677765
No 40
>>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} (A:1-23,A:178-325)
Probab=32.92 E-value=30 Score=14.70 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=10.8
Q ss_pred HHHHCCCCCCEEEEEECCCC
Q ss_conf 99856899965899840455
Q gi|254780498|r 177 ARSVAGINCPSIGLLNVGTE 196 (364)
Q Consensus 177 ak~~~~~~~PrVgLLNiG~E 196 (364)
-+.+..+..|||+++.+|.|
T Consensus 15 ~~~~~~~~~prv~ii~tGdE 34 (171)
T 1g8l_A 15 NEMLSRVTPVRVALFSTGDE 34 (171)
T ss_dssp HHHHHHCCCCEEEEEEECTT
T ss_pred HHHHHHCCCCEEEEECCCCC
T ss_conf 99996189954899803664
No 41
>>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA; 1.70A {Aquifex aeolicus VF5} PDB: 2qq1_A 2f7w_A 2f7y_A 2fuw_A (A:)
Probab=31.83 E-value=32 Score=14.59 Aligned_cols=62 Identities=18% Similarity=0.152 Sum_probs=33.6
Q ss_pred CCCCEEEEEECCCCCCCCCHH---HHHHHHHHHHCCCCCC--CEECCCC--HH-------HCC-CCCCCEEEECCHHH
Q ss_conf 999658998404555556579---9999999740245713--2002345--54-------532-45683899755127
Q gi|254780498|r 183 INCPSIGLLNVGTEEIKGNDV---LQESARLLRGECCGAF--KYKGFIE--AN-------DIA-KGFVDVIVTEGFSG 245 (364)
Q Consensus 183 ~~~PrVgLLNiG~E~~KG~~~---~kea~~LL~~~~~~~~--nF~GniE--g~-------~i~-~g~~DVvV~DGFtG 245 (364)
.++|||+++.+|.|-..|... -.--.++|++... +. -+.+-+. .. +.. .+.+|+|||-|=+|
T Consensus 3 ~~~~rv~vi~~GdEi~~G~~~d~n~~~l~~~l~~~G~-~v~~i~~~iv~Dd~~~I~~~i~~~~~~~~~dliittGG~g 79 (178)
T 2pbq_A 3 EKKAVIGVVTISDRASKGIYEDISGKAIIDYLKDVII-TPFEVEYRVIPDERDLIEKTLIELADEKGCSLILTTGGTG 79 (178)
T ss_dssp --CCEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBC-SCCEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCC-CCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 7763699999476643688858679999999998279-8748988834867999999999988732861999713445
No 42
>>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} (A:1-23,A:182-322)
Probab=31.76 E-value=30 Score=14.78 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=6.5
Q ss_pred CCCEEEEEECCCCC
Q ss_conf 99658998404555
Q gi|254780498|r 184 NCPSIGLLNVGTEE 197 (364)
Q Consensus 184 ~~PrVgLLNiG~E~ 197 (364)
++|||+++++|.|-
T Consensus 23 ~r~rv~Ii~tGdEl 36 (164)
T 1wu2_A 23 EKPKVGIIITGSEL 36 (164)
T ss_dssp CCCEEEEEEECTTE
T ss_pred CCCCEEEEEECCCC
T ss_conf 98638999405310
No 43
>>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, protein structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} (A:1-130)
Probab=31.64 E-value=32 Score=14.57 Aligned_cols=64 Identities=9% Similarity=-0.011 Sum_probs=41.7
Q ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHH--------CCCCCCCEEEECCH--HHHHH
Q ss_conf 965899840455555657999999997402457132002345545--------32456838997551--27889
Q gi|254780498|r 185 CPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEAND--------IAKGFVDVIVTEGF--SGNIA 248 (364)
Q Consensus 185 ~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~--------i~~g~~DVvV~DGF--tGNi~ 248 (364)
++.|=|+.-|+-...+++.+.+-.+.+++......-+.||+|..+ ...|.-.|+|.==| .|+-+
T Consensus 24 ~~~vilv~HGS~~~~~~~~~~~l~~~l~~~~~~~~v~~~fle~~~P~l~~~ll~~~g~~~v~vvP~fl~~G~H~ 97 (130)
T 1tjn_A 24 RRGLVIVGHGSQLNHYREVMELHRKRIEESGAFDEVKIAFAARKRRPMPDEAIREMNCDIIYVVPLFISYGLHV 97 (130)
T ss_dssp CEEEEEEECCTTSTTHHHHHHHHHHHHHHHTSSSEEEEEECSSSCSSCHHHHHHHCCCSEEEEEECCSSCSHHH
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCEEEEHHHHHHCCCCH
T ss_conf 63899996899987899999999999997679984987542166898299999974998797618877377405
No 44
>>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A (A:109-223)
Probab=31.29 E-value=32 Score=14.53 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=24.4
Q ss_pred HHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHCC
Q ss_conf 799999998549953999--70642678888875322
Q gi|254780498|r 95 SMWRAIEAVKKNQAASVV--TAGNTGALIAMARLCLS 129 (364)
Q Consensus 95 Sm~~a~~lvk~g~aDa~V--SaGnTGA~la~a~~~lg 129 (364)
..+.-..+.++|+-..+| |+||+|.-++.+-..+|
T Consensus 9 a~~~i~~a~~~g~~~~vv~aSsGN~g~AlA~~a~~~G 45 (115)
T 2o2e_A 9 VLGQALLARRMGKTRVIAETGAGQHGVATATACALLG 45 (115)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 9999986775287420024334741379999999759
No 45
>>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} (A:1-176,A:349-376)
Probab=30.58 E-value=33 Score=14.46 Aligned_cols=135 Identities=16% Similarity=0.076 Sum_probs=68.9
Q ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEE--CCHH-HHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHH
Q ss_conf 8982399997468777817779999999985799179997--8989-999998626975155799778520177830679
Q gi|254780498|r 9 GGNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMY--GDAK-VCLPILDSHPLLKERSCFHHCEVSIAMDERPAD 85 (364)
Q Consensus 9 ~~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLv--Gdee-~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~ 85 (364)
+++++||.+= . |.-+-...+.-.+.++++++++++.|+ |-.. .....+....+..+ .. ...+.+..+.
T Consensus 2 ~~~~kKIl~v-t-GTRae~iklaPli~~l~~~~~~e~~lv~TGqH~~~~~~~~~~~~i~~d-~~------l~~~~~~~sl 72 (204)
T 1v4v_A 2 EGGXKRVVLA-F-GTRPEATKXAPVYLALRGIPGLKPLVLLTGQHREQLRQALSLFGIQED-RN------LDVXQERQAL 72 (204)
T ss_dssp --CCEEEEEE-E-CSHHHHHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHTTTCCCS-EE------CCCCSSCCCH
T ss_pred CCCCCEEEEE-E-EHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCCHHCCCCCC-CC------CCCCCCCCCH
T ss_conf 9999889999-8-756869999999999961899988999906874566471224088876-56------7878988889
Q ss_pred HHHHCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECCCC----CCC
Q ss_conf 9971376427999999985499539997064267888887532255676322001105588984599861327----778
Q gi|254780498|r 86 ALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKCIILDVGAT----IGS 161 (364)
Q Consensus 86 AlR~kK~~SSm~~a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g~~vllD~GAN----~d~ 161 (364)
+-.-. ..|..-.+.+.+-+-|.++-.|.|..++++|.--.. .+=+++=+..|-- -++
T Consensus 73 ~~~~~---~~i~~~~~~l~~~~PD~VlV~GDt~~~lA~AlaA~~----------------~~IPvaHieaGlrS~d~~~~ 133 (204)
T 1v4v_A 73 PDLAA---RILPQAARALKEXGADYVLVHGDTLTTFAVAWAAFL----------------EGIPVGHVEAGLRSGNLKEP 133 (204)
T ss_dssp HHHHH---HHHHHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHH----------------TTCCEEEETCCCCCSCTTSS
T ss_pred HHHHH---HHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHH----------------HHHHHHEECCCCCCCCCCCC
T ss_conf 99999---999987766540476523101366431136788987----------------63445111035566665677
Q ss_pred CHHHHHHHHH
Q ss_conf 9899999999
Q gi|254780498|r 162 TVSHMVQLSI 171 (364)
Q Consensus 162 ~~~~L~qfA~ 171 (364)
-||+....++
T Consensus 134 ~pEE~~R~~i 143 (204)
T 1v4v_A 134 FPEEANRRLT 143 (204)
T ss_dssp TTHHHHHHHH
T ss_pred CHHHHHHHHH
T ss_conf 3466655441
No 46
>>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding; HET: ADP; 2.30A {Agrobacterium tumefaciens} (A:260-459)
Probab=28.79 E-value=36 Score=14.26 Aligned_cols=18 Identities=0% Similarity=-0.005 Sum_probs=9.8
Q ss_pred CHHHHHHHHHHHHHHHHC
Q ss_conf 868999999999999960
Q gi|254780498|r 316 DAKSIFNVLGIAHNMSQN 333 (364)
Q Consensus 316 ~~~a~~~ai~~a~~~~~~ 333 (364)
|+.++..||+.+..+.+.
T Consensus 167 d~~~la~ai~~~l~l~~~ 184 (200)
T 1rzu_A 167 TLDGLKQAIRRTVRYYHD 184 (200)
T ss_dssp SHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCCCC
T ss_conf 999999999999837079
No 47
>>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A* (A:1-109,A:247-284)
Probab=27.35 E-value=38 Score=14.11 Aligned_cols=63 Identities=17% Similarity=0.111 Sum_probs=36.2
Q ss_pred CCCEEEEEE-CCCCCCCC-CHHHHHHHHHHHHCCCCCCCEECCCCHH-------HCCCCCCCEEEECCHHHH
Q ss_conf 996589984-04555556-5799999999740245713200234554-------532456838997551278
Q gi|254780498|r 184 NCPSIGLLN-VGTEEIKG-NDVLQESARLLRGECCGAFKYKGFIEAN-------DIAKGFVDVIVTEGFSGN 246 (364)
Q Consensus 184 ~~PrVgLLN-iG~E~~KG-~~~~kea~~LL~~~~~~~~nF~GniEg~-------~i~~g~~DVvV~DGFtGN 246 (364)
+.+||+++- .|.-.-+| ++..-++-+.+++...-.+.|+-++... ++....+|+|++-||.-.
T Consensus 3 ~~~kVa~v~~~g~~~D~sfn~s~~~G~~~~~~~~gi~~~~~e~~~~~~~~~~~~~~a~~g~dlIi~~g~~~~ 74 (147)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAKCKYVTASTDAEYVPSLSAFADENMGLVVACGSFLV 74 (147)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTTCEEEEEECCSGGGHHHHHHHHHHTTCSEEEEESTTTH
T ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 875899998788999877899999999999998598599994599899999999999779998999175434
No 48
>>2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural genomics, chelatase super-family fold, 4Fe-4S iron-sulphur cluster; 1.9A {Deinococcus radiodurans} (A:118-249)
Probab=26.21 E-value=40 Score=13.98 Aligned_cols=41 Identities=22% Similarity=0.125 Sum_probs=17.3
Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHH
Q ss_conf 6589984045555565799999999740245713200234554
Q gi|254780498|r 186 PSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEAN 228 (364)
Q Consensus 186 PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~ 228 (364)
.++|+|=+|-- =.+....+-.+.+++......-.++|.|+.
T Consensus 24 ~~~~vvlvaHG--S~~~~~~~~~~~l~~~~~~~~v~~~~le~~ 64 (132)
T 2jh3_A 24 ADVTLLLLAAR--PGNAALETHAQALRERGQFAGVEVVLESRE 64 (132)
T ss_dssp GGCEEEEEESS--TTCHHHHHHHHHHHHHCCSSEEEEEECCCC
T ss_pred CCEEEEEEECC--CCCCCHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 75499998157--754206999999998468886589998446
No 49
>>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} (A:1-132,A:254-306)
Probab=25.77 E-value=40 Score=13.93 Aligned_cols=158 Identities=20% Similarity=0.255 Sum_probs=92.2
Q ss_pred EEEEEEECCCCCCCCH--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 2399997468777817--77999999998579917999789899999986269751557997785201778306799971
Q gi|254780498|r 12 VDTISLDLMGGDLGAR--DLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRR 89 (364)
Q Consensus 12 m~kIAVDaMGGD~~P~--~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR~ 89 (364)
|+||+|=.-|||- |. .+|.++...+..+ +.+++-+=+= .+-++. +.+.....+.+-..-..+-..+..
T Consensus 2 ~krI~IltsGGda-PGlNa~Ir~vv~~a~~~-g~~v~G~~~G--~~GL~~------~~~~~l~~~~v~~i~~~GGt~Lgt 71 (185)
T 1pfk_A 2 IKKIGVLTSGGDA-PGMNAAIRGVVRSALTE-GLEVMGIYDG--YLGLYE------DRMVQLDRYSVSDMINRGGTFLGS 71 (185)
T ss_dssp CCEEEEEECSSCC-TTHHHHHHHHHHHHHHT-TCEEEEESTH--HHHHHT------TCEEEECSGGGTTCTTCCSCTTCC
T ss_pred CCEEEEECCCCCC-HHHHHHHHHHHHHHHHC-CCEEEEECCC--HHHHCC------CCEEECCHHHHHHHHHCCCCEECC
T ss_conf 8649998658886-77899999999999877-9999999166--788727------986868999997798579972247
Q ss_pred CC-----CCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEEC-CCCCCCCH
Q ss_conf 37-----6427999999985499539997064267888887532255676322001105588984599861-32777898
Q gi|254780498|r 90 GR-----NVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKCIILDV-GATIGSTV 163 (364)
Q Consensus 90 kK-----~~SSm~~a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g~~vllD~-GAN~d~~~ 163 (364)
.| +..-...+++-+++-..|++|-.|--|.+-.+..+.=-.++=|- +.. |.++ |+ |..| +|
T Consensus 72 sR~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~gi~vvg---iPk---TIDN-----Di~GG~P--ta 138 (185)
T 1pfk_A 72 ARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFPCIG---LPG---TIDN-----DIKGGSP--VP 138 (185)
T ss_dssp CCCGGGGSHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHTTCCEEE---EEB---CTTC-----CCTCSCC--CH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEE---EEE---EECC-----CCCCCCC--CH
T ss_conf 788866657788899999997699889993693689999997643674331---211---2227-----9988999--98
Q ss_pred HHHHHHHHHHHHHHHHHC-CCCCCEEEEEE
Q ss_conf 999999999999999856-89996589984
Q gi|254780498|r 164 SHMVQLSILGSFFARSVA-GINCPSIGLLN 192 (364)
Q Consensus 164 ~~L~qfA~mGs~yak~~~-~~~~PrVgLLN 192 (364)
.+-+==.+||..-.+.+. +..+--|+|-+
T Consensus 139 ~DRilat~~G~~Av~~i~~g~~~~mv~~~~ 168 (185)
T 1pfk_A 139 YDRILASRMGAYAIDLLLAGYGGRCVGIQN 168 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 999999999999999997799986999999
No 50
>>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.1A {Escherichia coli} PDB: 1nn4_A (A:1-130)
Probab=25.01 E-value=42 Score=13.84 Aligned_cols=89 Identities=18% Similarity=0.168 Sum_probs=53.1
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHCC
Q ss_conf 23999974687778177799999999857991799978989999998626975155799778520177830679997137
Q gi|254780498|r 12 VDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRRGR 91 (364)
Q Consensus 12 m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR~kK 91 (364)
||||+| |.|++-...-+....+|++. +.+++=+|..+ -+..+-|-.+
T Consensus 1 mmkI~i---gsDhag~~lK~~i~~~L~~~-g~eV~D~G~~~------------------------~~~~dypd~a----- 47 (130)
T 2vvr_A 1 MKKIAF---GCDHVGFILKHEIVAHLVER-GVEVIDKGTWS------------------------SERTDYPHYA----- 47 (130)
T ss_dssp CCEEEE---EECTTGGGGHHHHHHHHHHT-TCEEEECCCCS------------------------SSCCCHHHHH-----
T ss_pred CCEEEE---EECCCHHHHHHHHHHHHHHC-CCEEEECCCCC------------------------CCCCCCCHHH-----
T ss_conf 977999---74870799999999999987-99899659986------------------------7666851788-----
Q ss_pred CCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHC
Q ss_conf 642799999998549953999706426788888753225567632200110
Q gi|254780498|r 92 NVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAF 142 (364)
Q Consensus 92 ~~SSm~~a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~ 142 (364)
....+.|.+|++|--|-..-||.=+..+- -+.||| |.|++.-
T Consensus 48 -----~~va~~v~~~~~~~GIliCGtG~G~~iaA---NKv~GI-rAa~~~d 89 (130)
T 2vvr_A 48 -----SQVALAVAGGEVDGGILICGTGVGISIAA---NKFAGI-RAVVCSE 89 (130)
T ss_dssp -----HHHHHHHHTTSSSEEEEEESSSHHHHHHH---HTSTTC-CEEECSS
T ss_pred -----HHHHHHHHHCCCCEEEEECCCCHHHHHHH---HHCCCC-EEEEECC
T ss_conf -----99999987166532687158754899998---841693-3555406
No 51
>>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} (G:210-289)
Probab=24.42 E-value=23 Score=15.47 Aligned_cols=53 Identities=17% Similarity=0.332 Sum_probs=36.6
Q ss_pred HHHHHHHHCCHHHCCCEEEEEECCEE-EEECCCCCHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 99999972696870874674216148-98388998689999999999999607068999
Q gi|254780498|r 283 SLREVKEGFDPRNFNGGVLLGVDGLV-VKGHGSSDAKSIFNVLGIAHNMSQNGFIDMVK 340 (364)
Q Consensus 283 ~l~~~~~~~d~~~~gGa~llGl~g~v-ik~HG~s~~~a~~~ai~~a~~~~~~~~~~~i~ 340 (364)
.|+.+-+++-++ +-.|+||-| |+++--.+..++.|+|..+..+-..+.-..++
T Consensus 22 vL~~Lgk~~~FE-----IAVG~NGrVWvk~~~~~~tiai~~~i~~~e~~~~~q~~~lv~ 75 (80)
T 2nn6_G 22 IIQEVGKLYPLE-----IVFGMNGRIWVKAKTIQQTLILANILEACEHMTSDQRKQIFS 75 (80)
T ss_dssp HHHHTTCSSSCC-----CEEETTTEEEECCSSHHHHHHHHHHHHHTTSSCTTTHHHHHH
T ss_pred HHHHHHCCCCEE-----EEEECCCEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 688761157868-----999478389982798889999999999876349999999999
No 52
>>2kpm_A Uncharacterized protein; methods development, structural genomics, PSI-2, protein structure initiative; NMR {Nitrosomonas europaea} (A:)
Probab=21.40 E-value=49 Score=13.41 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHCCHHHCCCEE
Q ss_conf 899999999726968708746
Q gi|254780498|r 280 IKKSLREVKEGFDPRNFNGGV 300 (364)
Q Consensus 280 ~~~~l~~~~~~~d~~~~gGa~ 300 (364)
+...|++....|||+.||-.-
T Consensus 45 vg~~L~k~~PdFd~r~YGy~k 65 (105)
T 2kpm_A 45 FGNYLNKLQPDFDSRLYGYKK 65 (105)
T ss_dssp HHHHHHHHCTTCCGGGTTCSS
T ss_pred HHHHHHHHCCCCCCCCCCHHH
T ss_conf 999998718999963367656
No 53
>>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} (A:)
Probab=21.32 E-value=49 Score=13.38 Aligned_cols=15 Identities=7% Similarity=0.127 Sum_probs=9.9
Q ss_pred CCCCEEEEEECCCCC
Q ss_conf 999658998404555
Q gi|254780498|r 183 INCPSIGLLNVGTEE 197 (364)
Q Consensus 183 ~~~PrVgLLNiG~E~ 197 (364)
..+|||+++++|.|-
T Consensus 13 ~~~~rv~ii~~GdE~ 27 (178)
T 2pjk_A 13 PKSLNFYVITISTSR 27 (178)
T ss_dssp CCCCEEEEEEECHHH
T ss_pred CCCCEEEEEEECCCC
T ss_conf 988779999985678
No 54
>>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} (A:44-145)
Probab=21.29 E-value=49 Score=13.38 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHCCCC-E--EEEEECCHHHHHHHHHHHCC
Q ss_conf 279999999854995-3--99970642678888875322
Q gi|254780498|r 94 SSMWRAIEAVKKNQA-A--SVVTAGNTGALIAMARLCLS 129 (364)
Q Consensus 94 SSm~~a~~lvk~g~a-D--a~VSaGnTGA~la~a~~~lg 129 (364)
...+....++++|.. . ..-|+||+|.-++..-..+|
T Consensus 7 ga~~~~~~~~~~g~~~~~vv~aSsGN~g~alA~~a~~~G 45 (102)
T 1o58_A 7 PALFMILDAEKRGLLKNGIVEPTSGNMGIAIAMIGAKRG 45 (102)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEECSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHCC
T ss_conf 999999999975999885796789716788888998759
No 55
>>2o2c_A GPI, glucose-6-phosphate isomerase, glycosomal, PGI, phosphohexose; dimer; HET: G6Q; 1.58A {Trypanosoma brucei brucei} PDB: 2o2d_A* 1q50_A (A:168-342)
Probab=20.65 E-value=39 Score=14.05 Aligned_cols=13 Identities=23% Similarity=0.192 Sum_probs=5.3
Q ss_pred CHHHHHHHHHHCC
Q ss_conf 9899999986269
Q gi|254780498|r 50 DAKVCLPILDSHP 62 (364)
Q Consensus 50 dee~I~~~l~~~~ 62 (364)
|...+...+...+
T Consensus 69 Dp~~~~~~l~~l~ 81 (175)
T 2o2c_A 69 DGTHIAEVLKSID 81 (175)
T ss_dssp SHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHC
T ss_conf 4678999986414
No 56
>>3ddo_A Urdpase, upase, uridine phosphorylase; transferase, cytoplasm, glycosyltransferase; 1.50A {Salmonella typhimurium} PDB: 1ryz_A 1sj9_A* 1y1q_A* 1y1s_A 1y1r_A 1zl2_A* 2hn9_A 1y1t_A* 2hsw_A 2hwu_A* 2pga_A* 2hrd_A 3dps_A 3c74_A* 2qdk_A 2iq5_A 2oec_A* 2i8a_A 2rj3_A 2oxf_A ... (A:)
Probab=20.44 E-value=19 Score=16.04 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=47.6
Q ss_pred EEEEECCHHHHHHHHHHCCCCCCCEEEECCCC-CCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 79997898999999862697515579977852-017783067999713764279999999854995399970642678
Q gi|254780498|r 44 RFLMYGDAKVCLPILDSHPLLKERSCFHHCEV-SIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGAL 120 (364)
Q Consensus 44 ~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~-vI~mde~P~~AlR~kK~~SSm~~a~~lvk~g~aDa~VSaGnTGA~ 120 (364)
..+++|...+..++.+..+............- ...-+..+...++.+-+..+....+..+.+-..+.+++.|.-|++
T Consensus 21 i~ii~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~v~~~~~G~G~~~aa~~~~~L~~~~~~~ii~~G~~G~l 98 (253)
T 3ddo_A 21 LAIVPGDPERVEKIAALMDKPVKLASHREFTSWRAELDGKAVIVCSTGIGGPSTSIAVEELAQLGIRTFLRIGTTGAI 98 (253)
T ss_dssp EEEEESCGGGHHHHHTTSEEEEEEEEETTEEEEEEEETTEEEEEECCCSSHHHHHHHHHHHHHTTCCEEEEEEEECCC
T ss_pred EEEECCCHHHHHHHHHHHCCCEEECCCCCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 899689989999999971776144123884899999999999999678778899999999987099789995565676
No 57
>>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding protein; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} (A:91-173)
Probab=20.36 E-value=52 Score=13.26 Aligned_cols=15 Identities=33% Similarity=0.519 Sum_probs=11.5
Q ss_pred HHHHHHCCCCEEEEE
Q ss_conf 999985499539997
Q gi|254780498|r 99 AIEAVKKNQAASVVT 113 (364)
Q Consensus 99 a~~lvk~g~aDa~VS 113 (364)
-+..||+|++|+++.
T Consensus 47 tvAAVrnGEADAV~a 61 (83)
T 3i6v_A 47 TIAAVRNGEADAVFA 61 (83)
T ss_dssp HHHHHHTTSSSEEEE
T ss_pred HHHHHHCCCCCEEEE
T ss_conf 999997799629997
Done!