HHsearch results for GI: 254780498 and protein with PDBid: 1yco_A

>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, PTB, nysgxrc; 2.40A {Enterococcus faecalis V583}
Probab=100.00  E-value=0  Score=308.86  Aligned_cols=273  Identities=15%  Similarity=0.126  Sum_probs=211.7

Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHC
Q ss_conf             23999974687778177799999999857-99179997898999999862697515579977852017783067999713
Q gi|254780498|r   12 VDTISLDLMGGDLGARDLILGASKFLEAH-PRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRRG   90 (364)
Q Consensus        12 m~kIAVDaMGGD~~P~~vi~Ga~~al~~~-~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR~k   90 (364)
                      |+||+| ++|+|   ..+++++..++++. .+..|+++|+++.+.        ..+.++|+|+++.              
T Consensus         1 mitiav-a~g~d---~~il~aa~~a~~e~~~~~~li~~~~~~~i~--------~~~~~eii~~~~~--------------   54 (279)
T 1yco_A            1 MITVSI-AGGSQ---PEILQLVKKALKEAEQPLQFIVFDTNENLD--------TENLWKYVHCSDE--------------   54 (279)
T ss_dssp             CEEEEE-ETCCS---HHHHHHHHHHHHHCCSCEEEEEEESSCCCC--------SSCCSEEEECSSH--------------
T ss_pred             CEEEEE-ECCCC---HHHHHHHHHHHHCCCCCCEEEEECHHHCCC--------HHCCCEEECCCCC--------------
T ss_conf             949999-16999---899999999997699886699508043032--------1228969889981--------------


Q ss_pred             CCCHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCC-CEEEEECCCCCCCCHHHHHH
Q ss_conf             7642799999998549953999706-426788888753225567632200110558898-45998613277789899999
Q gi|254780498|r   91 RNVSSMWRAIEAVKKNQAASVVTAG-NTGALIAMARLCLSRISGVDRPSLAAFWPTVKG-KCIILDVGATIGSTVSHMVQ  168 (364)
Q Consensus        91 K~~SSm~~a~~lvk~g~aDa~VSaG-nTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g-~~vllD~GAN~d~~~~~L~q  168 (364)
                        .+|++.|+++|++|++|+++|++ +|+++|..+.+.+++++++.||+.++.||++++ +++|+|+|+|++|+||+|+|
T Consensus        55 --~~~~~~a~~lv~~G~aD~lv~G~~~t~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~D~g~N~~p~~e~L~~  132 (279)
T 1yco_A           55 --AAVAQEAVSLVATGQAQILLKGIIQTHTLLKEMLKSEHQLKNKPILSHVAMVELPAGKTFLLTDCAMNIAPTQATLIE  132 (279)
T ss_dssp             --HHHHHHHHHHHHSTTCSEEEECSSCHHHHHHHHTCTTTCCBCSSSCEEEEEEECSSSCEEEEECSSSCSSCCHHHHHH
T ss_pred             --HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCHHHHHH
T ss_conf             --899999999997699888998988839999999987268899866899999980499579997227872767999999


Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHH
Q ss_conf             99999999998568999658998404555556579999999974024571320023455453245683899755127889
Q gi|254780498|r  169 LSILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIA  248 (364)
Q Consensus       169 fA~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~  248 (364)
                      ||+||+.|+|. ++++.|+|++|+.+.|+.++.+..++++.+++....  .++.++.++.+......++++++.|.+|.+
T Consensus       133 ~a~~~~~~ak~-~g~~~~~v~ll~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~  209 (279)
T 1yco_A          133 IVENAKEVAQK-LGLHHPKIALLSAAENFNPKMPSSVLAKEVTAHFND--QQEATVFGPLSLDLATSEEAVAHKRYSGPI  209 (279)
T ss_dssp             HHHHHHHHHHH-TTCSSCEEEEECSCSSCCTTCHHHHHHHHHHHHHSS--CSSCEEEEEECHHHHHCHHHHHHTTCCSSC
T ss_pred             HHHHHHHHHHH-HCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH--CCCCCCCCCCCCCCCCCHHHHHHHCCCCHH
T ss_conf             99999999998-289999558885135778997079999999998654--354323563111221158888630689645


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             99988889999999998632220889999998999999997269687087467421614898388998689999999999
Q gi|254780498|r  249 IKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAH  328 (364)
Q Consensus       249 LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~  328 (364)
                      .+.....               ++..+   .....+.++.+.|+|.+||| +|||++++|+++||++++++++|+|.+|.
T Consensus       210 ~~~~~~~---------------i~p~l---~a~ni~~K~l~~l~~~~~Gg-~llG~~~pVi~~srs~s~~~i~n~i~lA~  270 (279)
T 1yco_A          210 MGDADIL---------------VVPTI---DVGNCLYKSLTLFGHAKVGG-TIVGTKVPVVLTSRSDSTESKFHSLRFAM  270 (279)
T ss_dssp             SSCCSEE---------------ECSSH---HHHHHHHHHHHHHSCCEEEE-EEESBSSCEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHH---------------HHHHH---HHHHHHHHHHHHCCCCCEEE-EEECCCCCEEECCCCCCHHHHHHHHHHHH
T ss_conf             4234566---------------55568---87789999999718984421-00158985798999999999999999999


Q ss_pred             HHHHCC
Q ss_conf             999607
Q gi|254780498|r  329 NMSQNG  334 (364)
Q Consensus       329 ~~~~~~  334 (364)
                      ..|...
T Consensus       271 ~~v~~~  276 (279)
T 1yco_A          271 RQVHHH  276 (279)
T ss_dssp             HHHHCC
T ss_pred             HHHHHH
T ss_conf             997642