Query gi|254780498|ref|YP_003064911.1| putative glycerol-3-phosphate acyltransferase PlsX [Candidatus Liberibacter asiaticus str. psy62] Match_columns 364 No_of_seqs 153 out of 1524 Neff 5.7 Searched_HMMs 23785 Date Tue May 31 21:37:54 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780498.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1vi1_A Fatty acid/phospholipid 100.0 0 0 843.0 35.2 332 13-350 3-335 (345) 2 1u7n_A Fatty acid/phospholipid 100.0 0 0 825.4 34.7 331 10-347 1-335 (336) 3 1yco_A Branched-chain phosphot 100.0 0 0 308.9 10.3 273 12-334 1-276 (279) 4 1vmi_A Putative phosphate acet 100.0 2.3E-30 9.6E-35 210.0 23.2 288 4-334 18-338 (355) 5 1td9_A Phosphate acetyltransfe 100.0 4.8E-26 2E-30 182.8 25.8 278 7-329 17-326 (329) 6 1r5j_A Putative phosphotransac 99.9 3.9E-25 1.7E-29 177.0 23.5 282 7-332 19-333 (337) 7 2af4_C Phosphate acetyltransfe 99.9 7.9E-25 3.3E-29 175.1 21.4 280 8-333 12-330 (333) 8 1yxo_A 4-hydroxythreonine-4-ph 99.1 8.8E-08 3.7E-12 67.6 20.1 265 13-334 3-327 (328) 9 3lxy_A 4-hydroxythreonine-4-ph 98.8 1.8E-06 7.7E-11 59.3 19.8 268 10-334 6-332 (334) 10 2hi1_A 4-hydroxythreonine-4-ph 98.1 0.0005 2.1E-08 43.9 20.8 265 13-330 7-329 (330) 11 1qgo_A CBIK protein, anaerobic 65.0 6.5 0.00027 18.0 4.0 33 15-47 5-40 (264) 12 2pju_A Propionate catabolism o 61.3 4.8 0.0002 18.8 2.7 178 43-337 14-201 (225) 13 3g5l_A Putative S-adenosylmeth 58.4 3.4 0.00014 19.8 1.5 89 134-246 31-120 (253) 14 1a76_A Flap endonuclease-1 pro 47.9 13 0.00053 16.2 4.0 88 97-214 155-245 (326) 15 1b43_A Protein (FEN-1); nuclea 47.8 12 0.00051 16.3 3.0 96 97-214 155-257 (340) 16 2rdc_A Uncharacterized protein 41.8 16 0.00065 15.6 5.4 58 183-267 2-59 (153) 17 1su8_A CODH 2, carbon monoxide 40.4 16 0.00069 15.4 8.1 86 157-242 199-331 (636) 18 1tjn_A Sirohydrochlorin cobalt 39.3 17 0.00071 15.3 3.8 47 180-226 17-65 (156) 19 3lyh_A Cobalamin (vitamin B12) 38.0 18 0.00075 15.2 4.2 38 150-193 8-45 (126) 20 3gx1_A LIN1832 protein; APC633 36.4 17 0.00073 15.3 2.4 10 120-129 20-29 (130) 21 2f9f_A First mannosyl transfer 35.0 17 0.00071 15.3 2.1 67 186-254 49-117 (177) 22 1z34_A Purine nucleoside phosp 34.3 19 0.0008 15.0 2.3 74 44-120 15-94 (235) 23 3opn_A Putative hemolysin; str 34.1 21 0.00086 14.8 4.3 74 145-243 35-113 (232) 24 3ono_A Ribose/galactose isomer 33.1 21 0.0009 14.7 9.9 92 10-141 1-96 (214) 25 1oao_A CODH, carbon monoxide d 32.8 22 0.00091 14.7 8.7 88 155-242 219-353 (674) 26 2izo_A FEN1, flap structure-sp 30.7 23 0.00098 14.5 4.6 96 97-215 152-255 (346) 27 2kpm_A Uncharacterized protein 28.7 23 0.00095 14.6 1.9 20 281-300 46-65 (105) 28 1su1_A Hypothetical protein YF 28.3 26 0.0011 14.2 4.6 41 6-50 19-61 (208) 29 3gdw_A Sigma-54 interaction do 28.3 26 0.0011 14.2 2.4 10 237-246 67-76 (139) 30 1jqk_A CODH, carbon monoxide d 27.7 26 0.0011 14.1 7.0 87 156-242 202-336 (639) 31 2kzv_A Uncharacterized protein 26.6 28 0.0012 14.0 2.2 19 281-299 33-51 (92) 32 2ja9_A Exosome complex exonucl 25.0 29 0.0012 13.8 2.6 54 284-343 114-170 (175) 33 1q1g_A Uridine phosphorylase p 23.2 32 0.0013 13.6 2.0 74 44-120 20-97 (276) 34 2zkq_e 40S ribosomal protein S 22.8 32 0.0014 13.6 2.1 41 301-341 124-165 (179) 35 1gml_A CCT-gamma; chaperone, c 22.6 33 0.0014 13.5 4.6 65 182-251 24-95 (178) 36 1ass_A Thermosome; chaperonin, 22.1 21 0.00089 14.7 0.7 64 182-250 18-88 (159) 37 1je0_A MTAP;, 5'-methylthioade 21.0 35 0.0015 13.3 2.1 73 44-120 16-93 (236) 38 3i4t_A Diphthine synthase; nia 20.3 36 0.0015 13.3 2.9 35 100-135 90-133 (292) No 1 >1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4 Probab=100.00 E-value=0 Score=843.03 Aligned_cols=332 Identities=33% Similarity=0.597 Sum_probs=321.8 Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCC Q ss_conf 39999746877781777999999998579917999789899999986269751557997785201778306799971376 Q gi|254780498|r 13 DTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRRGRN 92 (364) Q Consensus 13 ~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR~kK~ 92 (364) ||||||+||||++|+++|+|+..|++++|+++|+|||++++|+++++++ .+|++|+||+++|+|+|+|+.|+|+||+ T Consensus 3 irIAvDaMGGD~~P~~vv~Ga~~al~~~~~~~i~LvG~e~~i~~~l~~~---~~ri~iv~a~~vI~m~d~p~~alr~kk~ 79 (345) T 1vi1_A 3 LRIAVDAMGGDHAPKAVIDGVIKGIEAFDDLHITLVGDKTTIESHLTTT---SDRITVLHADEVIEPTDEPVRAVRRKKN 79 (345) T ss_dssp EEEEEESSCSSSTTHHHHHHHHHHHHHCTTEEEEEEECHHHHHTTCCSC---CTTEEEEECCBCCCTTSCHHHHHHHCTT T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHC---CCCEEEEECCCCCCCCCCHHHHHHHCCC T ss_conf 2999980598668088999999999978897699992899999998536---2663899288740589876899884556 Q ss_pred CHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCC-CEEEEECCCCCCCCHHHHHHHHH Q ss_conf 42799999998549953999706426788888753225567632200110558898-45998613277789899999999 Q gi|254780498|r 93 VSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVKG-KCIILDVGATIGSTVSHMVQLSI 171 (364) Q Consensus 93 ~SSm~~a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g-~~vllD~GAN~d~~~~~L~qfA~ 171 (364) ||||+|+++||+|++||+||||||||+|+++++++||+|||+||||+++|||.++ +++|||+|||+||+|++|+|||+ T Consensus 80 -SSm~~a~~lvk~g~ada~VSaGnTGAl~a~a~~~l~~i~gi~RPaia~~~Pt~~g~~~~llD~GAN~d~~p~~L~qFA~ 158 (345) T 1vi1_A 80 -SSMVLMAQEVAENRADACISAGNTGALMTAGLFIVGRIKGIDRPALAPTLPTVSGDGFLLLDVGANVDAKPEHLVQYAI 158 (345) T ss_dssp -BHHHHHHHHHHTTSCSEEEECSCHHHHHHHHHHTTCBCTTCSSCEEECEECCSSSCCEEEECSSSCSSCCHHHHHHHHH T ss_pred -CHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHH T ss_conf -5599999983032467798446438999999987751047555531255456689861797378566779899999999 Q ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHHHHH Q ss_conf 99999998568999658998404555556579999999974024571320023455453245683899755127889999 Q gi|254780498|r 172 LGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKA 251 (364) Q Consensus 172 mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~LKt 251 (364) ||++|+|.++++++|||||||||+|++||++++|+||+||++.. +|||+|||||+|||+|.+||||||||||||+||| T Consensus 159 mGs~yak~~~g~~~PrVgLLNiG~E~~KG~~~~kea~~lL~~~~--~~nf~GnvEg~di~~g~~DVvV~DGFtGNi~LKt 236 (345) T 1vi1_A 159 MGSVYSQQVRGVTSPRVGLLNVGTEDKKGNELTKQTFQILKETA--NINFIGNVEARDLLDDVADVVVTDGFTGNVTLKT 236 (345) T ss_dssp HHHHHHHHTSCCSSCEEEEEESSSSTTCSCHHHHHHHHHHHSCT--TSEEEEEEEGGGGGGTSCSEEECCHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCC--CCCEEEECCCCCCCCCCCEEEEECCCHHHHHHHH T ss_conf 99999999559999947776356656676699999999887518--9615875576656789940999788235999985 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHH Q ss_conf 88889999999998632220889999998999999997269687087467421614898388998689999999999999 Q gi|254780498|r 252 AEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHNMS 331 (364) Q Consensus 252 ~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~~~ 331 (364) +||+++++++++|++++++++++++++++++.|++++++|||++|||||||||||+||||||+|+++||+|||++|.+++ T Consensus 237 ~EG~~~~i~~~lk~~~~~~~~~k~~~ll~~~~l~~l~~~~D~~~~gGA~lLGl~givik~HGsS~~~ai~nAI~~A~~~~ 316 (345) T 1vi1_A 237 LEGSALSIFKMMRDVMTSTLTSKLAAAVLKPKLKEMKMKMEYSNYGGASLFGLKAPVIKAHGSSDSNAVFRAIRQAREMV 316 (345) T ss_dssp HHHHHHHHHHHHHHHHTTTC-------CCHHHHHHHHHHHCGGGSCCEEEETBSSCEEECCTTCCHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHH T ss_conf 52067899999999986548888899987999999997579120799889737810899389999899999999999999 Q ss_pred HCCHHHHHHHHHHHHHHHH Q ss_conf 6070689999999998767 Q gi|254780498|r 332 QNGFIDMVKDDMQRVRDSL 350 (364) Q Consensus 332 ~~~~~~~i~~~~~~~~~~~ 350 (364) +++++++|++++++.++.. T Consensus 317 ~~~l~~~I~~~l~~~~~~~ 335 (345) T 1vi1_A 317 SQNVAALIQEEVKEEKTDE 335 (345) T ss_dssp HTTHHHHHHHHTSHHHHTC T ss_pred HHHHHHHHHHHHHHHCCCC T ss_conf 9668999999997511543 No 2 >1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} SCOP: c.77.1.4 Probab=100.00 E-value=0 Score=825.38 Aligned_cols=331 Identities=31% Similarity=0.551 Sum_probs=317.2 Q ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHH Q ss_conf 98239999746877781777999999998579917999789899999986269751557997785201778306799971 Q gi|254780498|r 10 GNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRR 89 (364) Q Consensus 10 ~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR~ 89 (364) ++.||||||+||||++|+++|+|+..|++++|+++|+|||++++|++++.+ .++++|+||+++|+|||+|+.|+|+ T Consensus 1 s~~ikIavDaMGGD~~P~~~v~Ga~~al~~~~d~~i~LvG~e~~i~~~l~~----~~~i~iv~a~~~I~m~d~p~~alr~ 76 (336) T 1u7n_A 1 SNAMKIAVDAMGGDNAPQAIVEGVMLAKQDFPDIEFQLYGKEAEIKKYITD----EKNITIIHTDEKIASDDEPVKAIRR 76 (336) T ss_dssp ---CEEEEESSCSTTTTHHHHHHHHHHHHHCTTCEEEEEECHHHHHTTCSC----CTTEEEEECSCCCCTTCCHHHHHHH T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHCC----CCCEEEEECCCCCCCCCCHHHHHHH T ss_conf 996299997059866808899999999987889879999699999987521----6882899589754589867899872 Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCC---CCCEEEEECCCCCCCCHHHH Q ss_conf 376427999999985499539997064267888887532255676322001105588---98459986132777898999 Q gi|254780498|r 90 GRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTV---KGKCIILDVGATIGSTVSHM 166 (364) Q Consensus 90 kK~~SSm~~a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~---~g~~vllD~GAN~d~~~~~L 166 (364) ||+ ||||+|+++||+|++||+||||||||+|++++++|||++||+||||+++|||. +++++|||+|||+||+|++| T Consensus 77 kk~-SSm~~a~~lvk~g~ada~VSaGnTGA~~a~~~~~lg~i~gi~RPal~~~~Pt~~~~~~~~~lLD~GAN~d~~~~~L 155 (336) T 1u7n_A 77 KKT-ASMVLAAQAVKNGEADAIFSAGNTGALLAAGLFIVGRIKNVERPGLMSTLPVMGEPDKGFDMLDLGANADNKPEHL 155 (336) T ss_dssp CTT-SHHHHHHHHHHHTSCSEEEESSCHHHHHHHHHHTTCBCTTCSSCEEEEEEECTTCTTCEEEEECSSSCSCCCHHHH T ss_pred CCC-CHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCEEEEECCCCCCCCHHHH T ss_conf 567-5599999998665777799258608899998987614556666643033565678878369998887898899999 Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHH Q ss_conf 99999999999985689996589984045555565799999999740245713200234554532456838997551278 Q gi|254780498|r 167 VQLSILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGN 246 (364) Q Consensus 167 ~qfA~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGN 246 (364) +|||+||++|+|.++++++|||||||||+|++||++++|+||++|+++. .+||+|||||+|||+|.+||||||||||| T Consensus 156 ~qFA~mG~~ya~~~~~i~~PrVgLLNiG~E~~KG~~~~~~a~~lL~~~~--~~nf~G~vEg~di~~G~~DVvV~DGFtGN 233 (336) T 1u7n_A 156 VQYAVLGSFYAEKVRNVQNPRVGLLNNGTEETKGSELTKKAFELLAADE--TINFVGNVEARELLNGVADVVVTDGFTGN 233 (336) T ss_dssp HHHHHHHHHHHHHTTCCSSCCEEEECSCC----CCHHHHHHHHHHHHCT--TSCEEEEECGGGGGGCSCSEEECCHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCC--CCCCEEECCCCCCCCCCCEEEEECCCHHH T ss_conf 9999999999997479989869997157424557599999999974057--86521005635356898549996881379 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHH Q ss_conf 899998888999999999863-2220889999998999999997269687087467421614898388998689999999 Q gi|254780498|r 247 IAIKAAEGAVRHISGVLQKSL-NRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLG 325 (364) Q Consensus 247 i~LKt~EG~~~~~~~~lk~~~-~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~ 325 (364) |+|||+||+++++++.||+++ .+++.++++++++++.|+++++++||++|||||||||||+||||||+|+++||+|||+ T Consensus 234 i~LKt~EG~~~~i~~~lk~~~~~~~~~~k~g~ll~~~~l~~~k~~~D~~~~gGA~lLGv~g~vik~HG~S~~~ai~nAI~ 313 (336) T 1u7n_A 234 AVLKSIEGTAMNMMSLLKTAILSEGVKGKMGALLLKNALHGMKDEMDYSKHGGAVLFGLKAPVIKTHGATGPDAVRYTIR 313 (336) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHTCGGGGCCEEEETBSSCEEECCTTCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCCCCCHHHHHHHHH T ss_conf 99987666899999999987500238999999999999999997679101398789737810897589999899999999 Q ss_pred HHHHHHHCCHHHHHHHHHHHHH Q ss_conf 9999996070689999999998 Q gi|254780498|r 326 IAHNMSQNGFIDMVKDDMQRVR 347 (364) Q Consensus 326 ~a~~~~~~~~~~~i~~~~~~~~ 347 (364) +|.++++++++++|+++++... T Consensus 314 ~a~~~~~~~v~~~i~~~~~~~~ 335 (336) T 1u7n_A 314 QIHTMLETQVVPQLVEYYEGKA 335 (336) T ss_dssp HHHHHHHTTHHHHHHHHHC--- T ss_pred HHHHHHHHCHHHHHHHHHHCCC T ss_conf 9999999687999999986047 No 3 >1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, PTB, nysgxrc; 2.40A {Enterococcus faecalis V583} Probab=100.00 E-value=0 Score=308.86 Aligned_cols=273 Identities=15% Similarity=0.126 Sum_probs=211.7 Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHC Q ss_conf 23999974687778177799999999857-99179997898999999862697515579977852017783067999713 Q gi|254780498|r 12 VDTISLDLMGGDLGARDLILGASKFLEAH-PRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRRG 90 (364) Q Consensus 12 m~kIAVDaMGGD~~P~~vi~Ga~~al~~~-~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR~k 90 (364) |+||+| ++|+| ..+++++..++++. .+..|+++|+++.+. ..+.++|+|+++. T Consensus 1 mitiav-a~g~d---~~il~aa~~a~~e~~~~~~li~~~~~~~i~--------~~~~~eii~~~~~-------------- 54 (279) T 1yco_A 1 MITVSI-AGGSQ---PEILQLVKKALKEAEQPLQFIVFDTNENLD--------TENLWKYVHCSDE-------------- 54 (279) T ss_dssp CEEEEE-ETCCS---HHHHHHHHHHHHHCCSCEEEEEEESSCCCC--------SSCCSEEEECSSH-------------- T ss_pred CEEEEE-ECCCC---HHHHHHHHHHHHCCCCCCEEEEECHHHCCC--------HHCCCEEECCCCC-------------- T ss_conf 949999-16999---899999999997699886699508043032--------1228969889981-------------- Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCC-CEEEEECCCCCCCCHHHHHH Q ss_conf 7642799999998549953999706-426788888753225567632200110558898-45998613277789899999 Q gi|254780498|r 91 RNVSSMWRAIEAVKKNQAASVVTAG-NTGALIAMARLCLSRISGVDRPSLAAFWPTVKG-KCIILDVGATIGSTVSHMVQ 168 (364) Q Consensus 91 K~~SSm~~a~~lvk~g~aDa~VSaG-nTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g-~~vllD~GAN~d~~~~~L~q 168 (364) .+|++.|+++|++|++|+++|++ +|+++|..+.+.+++++++.||+.++.||++++ +++|+|+|+|++|+||+|+| T Consensus 55 --~~~~~~a~~lv~~G~aD~lv~G~~~t~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~D~g~N~~p~~e~L~~ 132 (279) T 1yco_A 55 --AAVAQEAVSLVATGQAQILLKGIIQTHTLLKEMLKSEHQLKNKPILSHVAMVELPAGKTFLLTDCAMNIAPTQATLIE 132 (279) T ss_dssp --HHHHHHHHHHHHSTTCSEEEECSSCHHHHHHHHTCTTTCCBCSSSCEEEEEEECSSSCEEEEECSSSCSSCCHHHHHH T ss_pred --HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCHHHHHH T ss_conf --899999999997699888998988839999999987268899866899999980499579997227872767999999 Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHH Q ss_conf 99999999998568999658998404555556579999999974024571320023455453245683899755127889 Q gi|254780498|r 169 LSILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIA 248 (364) Q Consensus 169 fA~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~ 248 (364) ||+||+.|+|. ++++.|+|++|+.+.|+.++.+..++++.+++.... .++.++.++.+......++++++.|.+|.+ T Consensus 133 ~a~~~~~~ak~-~g~~~~~v~ll~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~ 209 (279) T 1yco_A 133 IVENAKEVAQK-LGLHHPKIALLSAAENFNPKMPSSVLAKEVTAHFND--QQEATVFGPLSLDLATSEEAVAHKRYSGPI 209 (279) T ss_dssp HHHHHHHHHHH-TTCSSCEEEEECSCSSCCTTCHHHHHHHHHHHHHSS--CSSCEEEEEECHHHHHCHHHHHHTTCCSSC T ss_pred HHHHHHHHHHH-HCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH--CCCCCCCCCCCCCCCCCHHHHHHHCCCCHH T ss_conf 99999999998-289999558885135778997079999999998654--354323563111221158888630689645 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHH Q ss_conf 99988889999999998632220889999998999999997269687087467421614898388998689999999999 Q gi|254780498|r 249 IKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAH 328 (364) Q Consensus 249 LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~ 328 (364) .+..... ++..+ .....+.++.+.|+|.+||| +|||++++|+++||++++++++|+|.+|. T Consensus 210 ~~~~~~~---------------i~p~l---~a~ni~~K~l~~l~~~~~Gg-~llG~~~pVi~~srs~s~~~i~n~i~lA~ 270 (279) T 1yco_A 210 MGDADIL---------------VVPTI---DVGNCLYKSLTLFGHAKVGG-TIVGTKVPVVLTSRSDSTESKFHSLRFAM 270 (279) T ss_dssp SSCCSEE---------------ECSSH---HHHHHHHHHHHHHSCCEEEE-EEESBSSCEEECCTTSCHHHHHHHHHHHH T ss_pred HHHHHHH---------------HHHHH---HHHHHHHHHHHHCCCCCEEE-EEECCCCCEEECCCCCCHHHHHHHHHHHH T ss_conf 4234566---------------55568---87789999999718984421-00158985798999999999999999999 Q ss_pred HHHHCC Q ss_conf 999607 Q gi|254780498|r 329 NMSQNG 334 (364) Q Consensus 329 ~~~~~~ 334 (364) ..|... T Consensus 271 ~~v~~~ 276 (279) T 1yco_A 271 RQVHHH 276 (279) T ss_dssp HHHHCC T ss_pred HHHHHH T ss_conf 997642 No 4 >1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structural genomics, JCSG, protein structure initiative, PSI; 2.32A {Escherichia coli} SCOP: c.77.1.5 Probab=100.00 E-value=2.3e-30 Score=210.05 Aligned_cols=288 Identities=14% Similarity=0.129 Sum_probs=219.4 Q ss_pred CCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHH Q ss_conf 31113898239999746877781777999999998579917999789899999986269751557997785201778306 Q gi|254780498|r 4 MDVLQGGNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERP 83 (364) Q Consensus 4 ~~~~~~~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P 83 (364) +.-+...+..||++ +=|-| ..+++++..+.++. -.+.+|+|++++|+..+.+.++..+.++|||+.+...+.|.. T Consensus 18 ~~~~ak~~pkrIvf-~Eged---~rvL~Aa~~~~~eg-ia~PILVG~~~~I~~~~~~~gl~l~~ieIIdp~~~~~~~e~~ 92 (355) T 1vmi_A 18 CRELALRAPARVVF-PDALD---QRVLKAAQYLHQQG-LATPILVANPFELRQFALSHGVAMDGLQVIDPHGNLAMREEF 92 (355) T ss_dssp HHGGGGSCCCEEEE-SCCSS---HHHHHHHHHHHHTT-SCEEEEESCHHHHHHHHHHHTCCCTTCEEECTTSCHHHHHHH T ss_pred HHHHHHHCCCEEEE-CCCCC---HHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHH T ss_conf 99988758998997-18899---89999999999879-957999868999999999779997777897787898999999 Q ss_pred HHHHHHCCC-----------CHHHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHHHCCCCCCCCCCCHHHCC-CCCCC- Q ss_conf 799971376-----------4279999999854995399970--64267888887532255676322001105-58898- Q gi|254780498|r 84 ADALRRGRN-----------VSSMWRAIEAVKKNQAASVVTA--GNTGALIAMARLCLSRISGVDRPSLAAFW-PTVKG- 148 (364) Q Consensus 84 ~~AlR~kK~-----------~SSm~~a~~lvk~g~aDa~VSa--GnTGA~la~a~~~lg~i~Gv~RPala~~~-Pt~~g- 148 (364) ...+.+++. ..+.+.|++||+.|+||++|+. ++|+.++..+..++|+.+|+.+++.+.++ |...+ T Consensus 93 ~~~~~~r~~~~~~~~a~~~~~d~~~~Aa~mV~~G~AD~lv~G~~~tt~~~l~~~~~iiG~~~g~~~~s~~~~m~~~~~~~ 172 (355) T 1vmi_A 93 AHRWLARAGEKTPPDALEKLTDPLMFAAAMVSAGKADVCIAGNLSSTANVLRAGLRIIGLQPGCKTLSSIFLMLPQYSGP 172 (355) T ss_dssp HHHHHHHHGGGCCTTHHHHTTSHHHHHHHHHHTTSCSEEEECSSSCHHHHHHHHHHHTCBCTTCCCCEEEEEEEESSSCC T ss_pred HHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCC T ss_conf 99999984799799999997371777677453676664723776468999999986513576420121245652046873 Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC---CCCCCCCCHHHHHHHHHHHHCCCCCCCEECCC Q ss_conf 459986132777898999999999999999856899965899840---45555565799999999740245713200234 Q gi|254780498|r 149 KCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLNV---GTEEIKGNDVLQESARLLRGECCGAFKYKGFI 225 (364) Q Consensus 149 ~~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLNi---G~E~~KG~~~~kea~~LL~~~~~~~~nF~Gni 225 (364) .+++.|||.|++|++++|+|+|++++.+++.+++++ |||++|+. |+..+--+..+++|.+++++.. +++.+-|-. T Consensus 173 ~l~~aD~~vn~~P~~eqla~Ia~~aa~~a~~l~g~~-PkVAlLS~S~~gs~~~~s~~~~~~a~~~~~~~~-~~~~vdGem 250 (355) T 1vmi_A 173 ALGFADCSVVPQPTAAQLADIALASAETWRAITGEE-PRVAMLSFSSNGSARHPCVANVQQATEIVRERA-PKLVVDGEL 250 (355) T ss_dssp CEEEESSSSCSSCCHHHHHHHHHHHHHHHHHHHSSC-CEEEEECSCSTTSSCSHHHHHHHHHHHHHHHHC-TTSEEEEEE T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCCCCCC T ss_conf 699836766668989999999999999999966999-985521213577988644899999999997228-997214776 Q ss_pred CHHH--------------CCCCCCCEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 5545--------------3245683899755-127889999888899999999986322208899999989999999972 Q gi|254780498|r 226 EAND--------------IAKGFVDVIVTEG-FSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEG 290 (364) Q Consensus 226 Eg~~--------------i~~g~~DVvV~DG-FtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~ 290 (364) -.+- -+.|.+||+|.-. =+|||..|...-+ T Consensus 251 q~D~Al~~~~~~~k~~~s~l~G~AnvLIfPnl~agNi~yK~l~~~----------------------------------- 295 (355) T 1vmi_A 251 QFDAAFVPEVAAQKAPASPLQGKANVMVFPSLEAGNIGYKIAQRL----------------------------------- 295 (355) T ss_dssp CHHHHHCHHHHHHHCTTCTTTTCCSEEECSSHHHHHHHHHHHHHH----------------------------------- T ss_pred CEEEEECHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHH----------------------------------- T ss_conf 312242798886128889778878689968878889999999984----------------------------------- Q ss_pred CCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 69687087467421614898388998689999999999999607 Q gi|254780498|r 291 FDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQNG 334 (364) Q Consensus 291 ~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~~~~~~ 334 (364) -+++.+ |.+|+|++.||+..+.++++..+.|.+-.|.-..+.. T Consensus 296 ~~~~~i-GpiL~G~~~Pv~~~sr~~sv~~i~n~~aiaa~~aq~~ 338 (355) T 1vmi_A 296 GGYRAV-GPLIQGLAAPMHDLSRGCSVQEIIELALVAAVPRQTE 338 (355) T ss_dssp HCEEEE-EEEEESBSSCEEECCTTCCHHHHHHHHHHHHCCC--- T ss_pred CCCEEE-HHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 498387-0777577998898999999999999999999999998 No 5 >1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.75A {Bacillus subtilis} SCOP: c.77.1.5 PDB: 1xco_A Probab=99.96 E-value=4.8e-26 Score=182.76 Aligned_cols=278 Identities=17% Similarity=0.215 Sum_probs=215.2 Q ss_pred CCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHH Q ss_conf 13898239999746877781777999999998579917999789899999986269751557997785201778306799 Q gi|254780498|r 7 LQGGNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADA 86 (364) Q Consensus 7 ~~~~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~A 86 (364) +-.++..||++ +=|- -+.+++++..+.++. -++.+|+|+++.|+..+++.++..+.++|+|+.+.-.. +.+... T Consensus 17 ~~~~~~~rIv~-aeg~---d~~vL~Aa~~~~~~g-i~~PILvG~~~~I~~~a~~lgl~l~~~eIIdp~~~~~~-~~~~~~ 90 (329) T 1td9_A 17 KVAGKDVKIVF-PEGL---DERILEAVSKLAGNK-VLNPIVIGNENEIQAKAKELNLTLGGVKIYDPHTYEGM-EDLVQA 90 (329) T ss_dssp HHTTSCCEEEE-SCTT---CHHHHHHHHHHHHTT-SSEEEEESCHHHHHHHHHTTTBCCTTCEEECTTTCTTH-HHHHHH T ss_pred HHHCCCCEEEE-ECCC---CHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCHHHHH-HHHHHH T ss_conf 98539998997-0879---989999999999869-96899977999999999986998556575172002899-999999 Q ss_pred H---HHCCC---------CHHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEE Q ss_conf 9---71376---------42799999998549953999706--4267888887532255676322001105588984599 Q gi|254780498|r 87 L---RRGRN---------VSSMWRAIEAVKKNQAASVVTAG--NTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKCII 152 (364) Q Consensus 87 l---R~kK~---------~SSm~~a~~lvk~g~aDa~VSaG--nTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g~~vl 152 (364) + |+++. ..+.+.|..+|+.|++|++|+.. +|..++.....+++..+|+.|.+.+..+|+.++.+++ T Consensus 91 ~~~~rk~~g~~~~a~~~~~~~~~~a~~mv~~G~aD~lv~G~~~~~~~~l~~~l~~ig~~~g~~~~s~~~~~~~~~~~l~~ 170 (329) T 1td9_A 91 FVERRKGKATEEQARKALLDENYFGTMLVYKGLADGLVSGAAHSTADTVRPALQIIKTKEGVKKTSGVFIMARGEEQYVF 170 (329) T ss_dssp HHHHTTTSSCHHHHHHHTTSHHHHHHHHHHTTSCSEEEECTTSCHHHHHHHHHHTSCBCTTCCCCEEEEEEEETTEEEEE T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHEECCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEE T ss_conf 99986378809999999887788999989655732211377667099999999631579997257788762268764799 Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC---CCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHH Q ss_conf 86132777898999999999999999856899965899840---455555657999999997402457132002345545 Q gi|254780498|r 153 LDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLNV---GTEEIKGNDVLQESARLLRGECCGAFKYKGFIEAND 229 (364) Q Consensus 153 lD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLNi---G~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~ 229 (364) .||+.|++|+.++|.++|+..+.++| .+|++ |||+||+. |+....=+...+++.++.++. .+++.+-|.+..+- T Consensus 171 tD~~vni~P~~eqla~Ia~~aa~~a~-~lgie-PkVAlLs~s~~~~~~~~s~~~~~~a~~~~~~~-~~~~~vdGpl~~D~ 247 (329) T 1td9_A 171 ADCAINIAPDSQDLAEIAIESANTAK-MFDIE-PRVAMLSFSTKGSAKSDETEKVADAVKIAKEK-APELTLDGEFQFDA 247 (329) T ss_dssp ECSSSCSSCCHHHHHHHHHHHHHHHH-TTTCC-CCEEEECSSSTTSSCSHHHHHHHHHHHHHHHH-CTTSCEEEEECHHH T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHH-HHCCC-CCCCCEECCCCCCCCCHHHHHHHHHHHHHHCC-CCCCEECCCCCHHH T ss_conf 78988749799999999999999999-71669-95500002456798870277899999998651-88866616653876 Q ss_pred C--------------CCCCCCEEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 3--------------2456838997551-278899998888999999999863222088999999899999999726968 Q gi|254780498|r 230 I--------------AKGFVDVIVTEGF-SGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPR 294 (364) Q Consensus 230 i--------------~~g~~DVvV~DGF-tGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~ 294 (364) . ..|.+||+|.-.. +|||..|+. +.+... T Consensus 248 Al~~~~a~~k~~~s~vaG~AnvLi~P~l~agNi~yK~l------------------------------------~~~~~~ 291 (329) T 1td9_A 248 AFVPSVAEKKAPDSEIKGDANVFVFPSLEAGNIGYKIA------------------------------------QRLGNF 291 (329) T ss_dssp HHCHHHHHHHCTTSSCSSCCSEEECSSHHHHHHHHHHH------------------------------------HHTTTC T ss_pred HCCHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHH------------------------------------HHHCCC T ss_conf 53987775308998668979989958817878999999------------------------------------983598 Q ss_pred HCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHH Q ss_conf 70874674216148983889986899999999999 Q gi|254780498|r 295 NFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHN 329 (364) Q Consensus 295 ~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~ 329 (364) +.-|.+|.|.+.||+....++++..+.|.+-.|.- T Consensus 292 ~~~GpIl~G~~~PV~~~sR~~s~~~i~~~~ala~~ 326 (329) T 1td9_A 292 EAVGPILQGLNMPVNDLSRGCNAEDVYNLALITAA 326 (329) T ss_dssp EEEEEEEESBSSCEEECCTTCCHHHHHHHHHHHHH T ss_pred EEECHHHHCCCCCEEECCCCCCHHHHHHHHHHHHH T ss_conf 38743766779987978999999999999999999 No 6 >1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like nucleotide-binding fold, structural genomics, BSGC structure funded by NIH; 2.70A {Streptococcus pyogenes} SCOP: c.77.1.5 Probab=99.95 E-value=3.9e-25 Score=177.02 Aligned_cols=282 Identities=16% Similarity=0.209 Sum_probs=214.8 Q ss_pred CCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHH--H Q ss_conf 13898239999746877781777999999998579917999789899999986269751557997785201778306--7 Q gi|254780498|r 7 LQGGNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERP--A 84 (364) Q Consensus 7 ~~~~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P--~ 84 (364) +-.++..||++ .+---..+++++..+.++. -.+.+|+|++++|+..+++.++..+.++|+|+.+.-..++.. . T Consensus 19 ~~~~~~krIvf----aeg~d~rvL~Aa~~~~~~g-i~~PILvG~~~~I~~~~~~~gl~~~~~eIId~~~~~~~~~~~~~~ 93 (337) T 1r5j_A 19 KILGKNMKIVF----PEGNDERVVRAAARLKFEG-LLEPIILGQSEEVRNLLTKLGFADQDYTIINPNEYADFDKMKEAF 93 (337) T ss_dssp HHTTSCCEEEE----SCSSCHHHHHHHHHHHTTT-SCEEEEBSCHHHHHHHHHHTTCCCSSCCCBCSSSCTTHHHHHHHH T ss_pred HHHHCCCEEEE----ECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHH T ss_conf 98518998998----0879989999999999869-968999779999999999779896675577889768899999999 Q ss_pred HHHHHCCC---------CHHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHCCCCCCCCCCCHHHC--CCCCCCCEE Q ss_conf 99971376---------42799999998549953999706--426788888753225567632200110--558898459 Q gi|254780498|r 85 DALRRGRN---------VSSMWRAIEAVKKNQAASVVTAG--NTGALIAMARLCLSRISGVDRPSLAAF--WPTVKGKCI 151 (364) Q Consensus 85 ~AlR~kK~---------~SSm~~a~~lvk~g~aDa~VSaG--nTGA~la~a~~~lg~i~Gv~RPala~~--~Pt~~g~~v 151 (364) ..+|+++. ....+.|+++|+.|++|++|+.. +|+.++.....+++..++..+..-..+ +|+.++..+ T Consensus 94 ~~~r~~~~~~~~a~~~~~d~~~~a~~mv~~G~aD~lv~G~~~~t~~~l~~~l~~i~~~~~~~~~s~~~~~~~~~~~~~l~ 173 (337) T 1r5j_A 94 VEVRKGKATLEDADKMLRDVNYFGVMLVKMGLADGMVSGAIHSTADTVRPALQIIKTKPGISRTSGVFLMNRENTSERYV 173 (337) T ss_dssp HHHHTTTCCHHHHHHHTTSHHHHHHHHHHTTSCSEEEECSSSCSHHHHHHHHHSSCBCTTCSSCEEEEEEEEGGGTEEEE T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEE T ss_conf 99972688699999986646899999996799865651555573888877898725788874332268885034565279 Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC---CCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHH Q ss_conf 986132777898999999999999999856899965899840---45555565799999999740245713200234554 Q gi|254780498|r 152 ILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLNV---GTEEIKGNDVLQESARLLRGECCGAFKYKGFIEAN 228 (364) Q Consensus 152 llD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLNi---G~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~ 228 (364) +-||+.|++|++++|+++|+....++| .++++ ||||+|+. |+....-....+++.+++++.. +++.+-|..-.+ T Consensus 174 ~tD~avn~~P~~eqla~Ia~~aa~~~r-~~g~e-PkVA~LS~s~~~s~~~~s~~~~~~a~~~~~~~~-~~~~vdGpl~~D 250 (337) T 1r5j_A 174 FADCAINIDPTAQELAEIAVNTAETAK-IFDID-PKIAMLSFSTKGSGKAPQVDKVREATEIATGLN-PDLALDGELQFD 250 (337) T ss_dssp ESCSSSCSSCCHHHHHHHHHHHHHHHH-HTTCC-CCEEEECSCSTTSSCSHHHHHHHHHHHHHHHHC-TTSCEEEEECHH T ss_pred EECCEEECCCCHHHHHHHHHHHHHHHH-HCCCC-CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCCCCCCCHH T ss_conf 721512218399999999999999999-73999-870011023357988556999999999998468-996347874155 Q ss_pred H--------------CCCCCCCEEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCH Q ss_conf 5--------------32456838997551-27889999888899999999986322208899999989999999972696 Q gi|254780498|r 229 D--------------IAKGFVDVIVTEGF-SGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDP 293 (364) Q Consensus 229 ~--------------i~~g~~DVvV~DGF-tGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~ 293 (364) - -+.|.+||+|.-.. +|||..|... .+.. T Consensus 251 ~Al~~~~a~~K~~~s~vaG~AnvLIfP~l~agNi~yK~l~------------------------------------~~~~ 294 (337) T 1r5j_A 251 AAFVPETAAIKAPDSAVAGQANTFVFPDLQSGNIGYKIAQ------------------------------------RLGM 294 (337) T ss_dssp HHHCHHHHHHHSCSCSSTTCCCEEECSSHHHHHHHHHHHH------------------------------------HTTC T ss_pred HHCCHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHH------------------------------------HHCC T ss_conf 5529999997489987789899899188278799999999------------------------------------8349 Q ss_pred HHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHH Q ss_conf 870874674216148983889986899999999999996 Q gi|254780498|r 294 RNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQ 332 (364) Q Consensus 294 ~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~~~~ 332 (364) -..-|.+|+|++.||+....++++..+.|.+-.|.-.++ T Consensus 295 ~~~~Gpil~G~~~Pv~~~SR~~s~~~i~~~~alaa~~A~ 333 (337) T 1r5j_A 295 FDAIGPILQGLNKPVNDLSRGSSAEDIYKLAIITAAQAI 333 (337) T ss_dssp CEEEEEEEESBSSCEEECCTTCCHHHHHHHHHHHHHHHH T ss_pred CCEECHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHH T ss_conf 808831655789987979999999999999999999999 No 7 >2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound PER monomer, acyltransferase; HET: COA; 2.15A {Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A* 2af3_C* Probab=99.94 E-value=7.9e-25 Score=175.09 Aligned_cols=280 Identities=15% Similarity=0.180 Sum_probs=207.2 Q ss_pred CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHH--- Q ss_conf 38982399997468777817779999999985799179997898999999862697515579977852017783067--- Q gi|254780498|r 8 QGGNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPA--- 84 (364) Q Consensus 8 ~~~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~--- 84 (364) ..++..||++ +=|-| ..+++++..+.++. -.+.+|+|++++|+....+.++ +.++|+++.+.-.. +... T Consensus 12 ak~~~krIv~-~egeD---~rvL~Aa~~~~~~g-i~~pILvG~~~~I~~~a~~l~l--~~~eiIdp~~~e~~-~~~~~~~ 83 (333) T 2af4_C 12 AKKLNKTIAL-PETED---IRTLQAAAKILERG-IADIVLVGNEADIKALAGDLDL--SKAKIVDPKTYEKK-DEYINAF 83 (333) T ss_dssp HHHHCCEEEE-CCTTS---HHHHHHHHHHHHHT-SCEEEEESCHHHHHHHHSSCCC--TTSEEECTTSCTTH-HHHHHHH T ss_pred HHHCCCEEEE-CCCCC---HHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCC--CCCEEECCCCCHHH-HHHHHHH T ss_conf 9738998998-28799---89999999999869-9379998799999999985899--86778788652668-9999999 Q ss_pred HHHHHCCC----------CHHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHCCCCCCCCCCCHHHCC--CC----C Q ss_conf 99971376----------42799999998549953999706--4267888887532255676322001105--58----8 Q gi|254780498|r 85 DALRRGRN----------VSSMWRAIEAVKKNQAASVVTAG--NTGALIAMARLCLSRISGVDRPSLAAFW--PT----V 146 (364) Q Consensus 85 ~AlR~kK~----------~SSm~~a~~lvk~g~aDa~VSaG--nTGA~la~a~~~lg~i~Gv~RPala~~~--Pt----~ 146 (364) ..+|++|+ ....+.|++||+.|+||++|+.. +|..++.....++|..+|..+..-..++ |. . T Consensus 84 ~~~r~~kG~~~~~a~~~~~~~~~~a~~mv~~G~aD~lv~G~~~~~~~~l~~~~~~ig~~~g~~~~s~~~i~~~p~~~~~~ 163 (333) T 2af4_C 84 YELRKHKGITLENAAEIMSDYVYFAVMMAKLGEVDGVVSGAAHSSSDTLRPAVQIVKTAKGAALASAFFIISVPDCEYGS 163 (333) T ss_dssp HHHHGGGTCCHHHHHHHTTSHHHHHHHHHHTTSCSEEEECTTSCSHHHHHHHHHHTCBSTTCSCCEEEEEEECTTCCSTB T ss_pred HHHHCCCCCCHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCC T ss_conf 99954479999999988317799999999748766362278888299999999996403774022258999603333577 Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC---CCCCCCCCHHHHHHHHHHHHCCCCCCCEEC Q ss_conf 98459986132777898999999999999999856899965899840---455555657999999997402457132002 Q gi|254780498|r 147 KGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLNV---GTEEIKGNDVLQESARLLRGECCGAFKYKG 223 (364) Q Consensus 147 ~g~~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLNi---G~E~~KG~~~~kea~~LL~~~~~~~~nF~G 223 (364) ++..++.|++.|++|++++|+++|+..+..++. ++++.|||+||+. |+..+.-+...+++.+++++. .+++.+-| T Consensus 164 ~~~l~~tD~~vn~~P~~eqla~Ia~~aa~~~~~-lg~~~PkVAlLS~s~~~s~~~~s~~~~~~a~~~~~~~-~~~~~vdG 241 (333) T 2af4_C 164 DGTFLFADSGMVEMPSVEDVANIAVISAKTFEL-LVQDVPKVAMLSYSTKGSAKSKLTEATIASTKLAQEL-APDIAIDG 241 (333) T ss_dssp TTEEEEETSSSCSSCCHHHHHHHHHHHHHHHHH-HHCSCCEEEEECSCSTTSCCSHHHHHHHHHHHHHHHH-CTTSEEEE T ss_pred CCEEEECCCCCEECCCHHHHHHHHHHHHHHHHH-HCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEC T ss_conf 864896077554590999999999999999998-5563330567750357899980389999999998613-78905715 Q ss_pred CCCHH--------------HCCCCCCCEEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 34554--------------532456838997551-278899998888999999999863222088999999899999999 Q gi|254780498|r 224 FIEAN--------------DIAKGFVDVIVTEGF-SGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVK 288 (364) Q Consensus 224 niEg~--------------~i~~g~~DVvV~DGF-tGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~ 288 (364) ..--+ .-..|.+||+|---. +|||..|.+.- T Consensus 242 plq~D~Al~~e~a~~K~~~s~v~G~AnvLifP~l~agNi~yK~l~~---------------------------------- 287 (333) T 2af4_C 242 ELQVDAAIVPKVAASKAPGSPVAGKANVFIFPDLNCGNIAYKIAQR---------------------------------- 287 (333) T ss_dssp EECHHHHHCHHHHHHHSTTCSSTTSCCEEECSSHHHHHHHHHHHHH---------------------------------- T ss_pred CCHHHHHCCHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHH---------------------------------- T ss_conf 6307665097889854899867898998993880787899999998---------------------------------- Q ss_pred HHCCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHC Q ss_conf 726968708746742161489838899868999999999999960 Q gi|254780498|r 289 EGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQN 333 (364) Q Consensus 289 ~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~~~~~ 333 (364) .-+++.+ |.+|.|++.||+....+++...+.|.+-.+.-.++. T Consensus 288 -~~~~~~~-Gpil~G~~~Pv~~~SR~~s~~~i~~~~ala~~~A~~ 330 (333) T 2af4_C 288 -LAKAEAY-GPITQGLAKPINDLSRGCSDEDIVGAVAITCVQAAA 330 (333) T ss_dssp -TSCCEEE-EEEEESBSSCEEECCTTCCHHHHHHHHHHHHHHHHH T ss_pred -HCCCEEE-CHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHH T ss_conf -5397797-506446899878799999999999999999999985 No 8 >1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural genomics, PSI; 2.01A {Pseudomonas aeruginosa} Probab=99.07 E-value=8.8e-08 Score=67.59 Aligned_cols=265 Identities=15% Similarity=0.168 Sum_probs=158.1 Q ss_pred EEEEEECCC--CCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCC-----------------EEEECC Q ss_conf 399997468--7778177799999999857991799978989999998626975155-----------------799778 Q gi|254780498|r 13 DTISLDLMG--GDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKER-----------------SCFHHC 73 (364) Q Consensus 13 ~kIAVDaMG--GD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~r-----------------i~Ii~a 73 (364) +|||| .|| .--||+.+++. +.+....+++++|+.+.++...+......+. +.+++. T Consensus 3 ~kIaI-T~GDPaGIGpEIilka----~~~~~~~~~vvig~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~l~v~~~ 77 (328) T 1yxo_A 3 LRFAL-TPGEPAGIGPDLCLLL----ARSAQPHPLIAIASRTLLQERAGQLGLAIDLKDVSPAAWPERPAKAGQLYVWDT 77 (328) T ss_dssp CCEEE-ECCSTTSSHHHHHHHH----TTSCCSSCEEEEECHHHHHHHHHHHTCCCEEEECBTTBCCSSCCCTTEEEEEEC T ss_pred CEEEE-ECCCCCHHHHHHHHHH----HHHCCCCCEEEEECHHHHHHHHHHCCCCCCEEECCHHHHHHHCCCCCEEEEECC T ss_conf 60999-8898744689999999----971799998999899999999998499985136681332330267885678536 Q ss_pred CC--CCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHH------HHHCCCCCCCCCCCHHHCCC Q ss_conf 52--0177830679997137642799999998549953999706-426788888------75322556763220011055 Q gi|254780498|r 74 EV--SIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAG-NTGALIAMA------RLCLSRISGVDRPSLAAFWP 144 (364) Q Consensus 74 ~~--vI~mde~P~~AlR~kK~~SSm~~a~~lvk~g~aDa~VSaG-nTGA~la~a------~~~lg~i~Gv~RPala~~~P 144 (364) +. .+.....-..+=+-- -.|+..|++++++|++||+|.+= |--++-..+ +.++...-+..++. |-. T Consensus 78 ~~~~~~~~G~~~~~~g~~~--~~~l~~Av~~~~~g~~~alVT~PInK~~i~~aG~~f~GHTE~la~~~~~~~~~-Mml-- 152 (328) T 1yxo_A 78 PLAAPVRPGQLDRANAAYV--LETLTRAGQGCLDGHFAGMITAPVHKGVINEAGIPFSGHTEFLADLTHTAQVV-MML-- 152 (328) T ss_dssp CCSSCCCTTCCCGGGHHHH--HHHHHHHHHHHHTTSCSEEEECCCCHHHHHHTTCCCCCHHHHHHHHTTCSCCE-EEE-- T ss_pred CCCCCCCCCCCCHHHHHHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCEEHHHHHHHCCCCHH-HHH-- T ss_conf 4456778897498999999--99999999999719754366078278999867998486659877650465347-653-- Q ss_pred CCCCCEE-EE-------ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE----CCCCCCCCCHH---HHHHHH Q ss_conf 8898459-98-------613277789899999999999999985689996589984----04555556579---999999 Q gi|254780498|r 145 TVKGKCI-IL-------DVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN----VGTEEIKGNDV---LQESAR 209 (364) Q Consensus 145 t~~g~~v-ll-------D~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN----iG~E~~KG~~~---~kea~~ 209 (364) .-++..+ ++ |+-.++ +.+.+.+-..+-....+..+++++||++++- -|+.-.-|+|. +.-|-+ T Consensus 153 ~~~~L~V~~~T~HipLk~V~~~i--t~~~I~~~i~~~~~~l~~~~gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PaI~ 230 (328) T 1yxo_A 153 ATRGLRVALATTHLPLREVADAI--SDERLTRVARILHADLRDKFGIAHPRILVCGLNPHAGEGGHLGREEIEVIEPCLE 230 (328) T ss_dssp EETTEEEEESSCSCCHHHHHHHC--CHHHHHHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGTTTTTCSHHHHTHHHHHH T ss_pred CCCCEEEEEEECCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHCCCCCCHHHHHHHHHHH T ss_conf 12504899986058799999876--1778999999999999998088787524624799845528886156898999999 Q ss_pred HHHHCCCCCCCEECCCCHHHCCC----CCCCEEEE---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 97402457132002345545324----56838997---551278899998888999999999863222088999999899 Q gi|254780498|r 210 LLRGECCGAFKYKGFIEANDIAK----GFVDVIVT---EGFSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKK 282 (364) Q Consensus 210 LL~~~~~~~~nF~GniEg~~i~~----g~~DVvV~---DGFtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~ 282 (364) .|++. .++..|..=++-+|. ++.|+||| | .|-|.+|+..- T Consensus 231 ~l~~~---gi~v~GP~paDt~F~~~~~~~~D~vvamYHD--Qglip~K~~~f---------------------------- 277 (328) T 1yxo_A 231 RLRGE---GLDLIGPLPADTLFTPKHLEHCDAVLAMYHD--QGLPVLKYKGF---------------------------- 277 (328) T ss_dssp HHHTT---TCEEEEEECHHHHTSHHHHTTCSEEEESSHH--HHHHHHHHHHT---------------------------- T ss_pred HHHHC---CCCCCCCCCHHHHHHHHCCCCCCEEEEECCC--CCCHHHHHCCC---------------------------- T ss_conf 99876---9877899883788875005787589970210--12314542156---------------------------- Q ss_pred HHHHHHHHCCHHHCCCEEEEEECCE-EEEECC---------CCCHHHHHHHHHHHHHHHHCC Q ss_conf 9999997269687087467421614-898388---------998689999999999999607 Q gi|254780498|r 283 SLREVKEGFDPRNFNGGVLLGVDGL-VVKGHG---------SSDAKSIFNVLGIAHNMSQNG 334 (364) Q Consensus 283 ~l~~~~~~~d~~~~gGa~llGl~g~-vik~HG---------~s~~~a~~~ai~~a~~~~~~~ 334 (364) ..|=-+-|||.=+ +=..|| .++..++.+||++|.++.+++ T Consensus 278 ------------~~~VnvtlGLp~irtS~dHGTa~diag~~~A~~~s~~~Ai~~a~~~~~~r 327 (328) T 1yxo_A 278 ------------GAAVNVTLGLPIIRTSVDHGTALDLAGSGRIDSGSLQVALETAYQMAASR 327 (328) T ss_dssp ------------TSCEEEEESSSSCEEEECSCCCGGGTTTCCCCCHHHHHHHHHHHHHHHHC T ss_pred ------------CCCEEEECCCCEEEECCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHC T ss_conf ------------65379964899667679988336550789899699999999999999715 No 9 >3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD- dependent, metal-binding, NAD, NADP, oxidoreductase, pyridoxine biosynthesis; HET: SUC; 1.70A {Yersinia pestis} PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A Probab=98.85 E-value=1.8e-06 Score=59.28 Aligned_cols=268 Identities=15% Similarity=0.154 Sum_probs=159.3 Q ss_pred CCEEEEEEECCC--CCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCC----------------EEEE Q ss_conf 982399997468--7778177799999999857991799978989999998626975155----------------7997 Q gi|254780498|r 10 GNVDTISLDLMG--GDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKER----------------SCFH 71 (364) Q Consensus 10 ~~m~kIAVDaMG--GD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~r----------------i~Ii 71 (364) .+..|||| .|| .--||+.+++ ++++....+++++|+.+.+....+..+...+. +.++ T Consensus 6 ~~~~rIaI-T~GDPaGIGpEIilk----~~~~~~~~~~iiigd~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~~l~v~ 80 (334) T 3lxy_A 6 NHNNRLVI-TPGEPAGVGPDLAIT----LAQQDWPVELVVCADPALLLARASQLNLPLQLREYQADQPAIAQQAGSLTIL 80 (334) T ss_dssp CCCSEEEE-ECCCTTSSHHHHHHH----HTTSCCSSEEEEEECHHHHHHHHHHTTCCCEEEECCTTSCCCCCCTTEEEEE T ss_pred CCCCCEEE-ECCCCCHHHHHHHHH----HHHCCCCCCEEEEECHHHHHHHHHHCCCCCEEEEECCCCHHHCCCCCCEEEE T ss_conf 69995899-758875417999999----9716799986999899999999997599961788478513221467833540 Q ss_pred CCCCCC--CCC---CHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHH------HHHCCCCCCCCCCCH Q ss_conf 785201--778---30679997137642799999998549953999706-426788888------753225567632200 Q gi|254780498|r 72 HCEVSI--AMD---ERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAG-NTGALIAMA------RLCLSRISGVDRPSL 139 (364) Q Consensus 72 ~a~~vI--~md---e~P~~AlR~kK~~SSm~~a~~lvk~g~aDa~VSaG-nTGA~la~a------~~~lg~i~Gv~RPal 139 (364) +..... ... .....+. -.|+..|++++++|++||+|.+= |-.++-..+ +-+|...-+..++.. T Consensus 81 ~~~~~~~~~~G~~~~~~g~~~-----~~~l~~A~~~~~~g~~daiVT~PInK~~i~~aG~~f~GHTE~la~~~~~~~~~M 155 (334) T 3lxy_A 81 PVKTAVNVVPGKLDVGNSHYV-----VETLAKACDGAISGEFAALVTGPVQKSIINDAGIPFIGHTEFFADRSHCQRVVM 155 (334) T ss_dssp ECCCSSCCCTTCCCGGGHHHH-----HHHHHHHHHHHHHTSSSCEEECCCCHHHHHHTTCCCSCHHHHHHHHHTCSCCEE T ss_pred CCCCCCCCCCCCCCHHHHHHH-----HHHHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHH T ss_conf 012356578897573233899-----999999998853241048997761256676438885873456530027887011 Q ss_pred HHCCCCCCCCEEEE-------ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE----CCCCCCCCCHH---HH Q ss_conf 11055889845998-------613277789899999999999999985689996589984----04555556579---99 Q gi|254780498|r 140 AAFWPTVKGKCIIL-------DVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN----VGTEEIKGNDV---LQ 205 (364) Q Consensus 140 a~~~Pt~~g~~vll-------D~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN----iG~E~~KG~~~---~k 205 (364) +-+ +.+=.++++ |+-. ..+.+.+.+.-..-....+.-+|+++||+|.+- -|+.-.-|+|. +. T Consensus 156 ml~--~~~LrV~lvTtHIpLk~V~~--~It~~~I~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAGE~G~~G~EE~~iI~ 231 (334) T 3lxy_A 156 MLA--TEELRVALATTHLPLLAVPG--AITQASLHEVITILDNDLKTKFGITQPQIYVCGLNPHAGEGGHMGHEEIDTII 231 (334) T ss_dssp EEE--ETTEEEEESSCSCCGGGHHH--HCCHHHHHHHHHHHHHHHHHTSCCSSCCEEEECSSGGGGGGGTTCSHHHHTHH T ss_pred HEE--ECCCEEEEEECCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHH T ss_conf 032--16727999806750888764--24177899999999999998449976648997038986323653057889899 Q ss_pred HHHHHHHHCCCCCCCEECCCCHHHCCC----CCCCEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 999997402457132002345545324----5683899755-12788999988889999999998632220889999998 Q gi|254780498|r 206 ESARLLRGECCGAFKYKGFIEANDIAK----GFVDVIVTEG-FSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLI 280 (364) Q Consensus 206 ea~~LL~~~~~~~~nF~GniEg~~i~~----g~~DVvV~DG-FtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~ 280 (364) -|-+.|++. .++..|..-++-+|. ++.|+|||== =.|-+.+|+.. T Consensus 232 Pai~~~~~~---gi~v~GP~paDt~F~~~~~~~~D~vvamYHDQglip~K~l~--------------------------- 281 (334) T 3lxy_A 232 PALNTLRQQ---GINLIGPLPADTLFQPKYLQHADAVLAMYHDQGLPVLKYQG--------------------------- 281 (334) T ss_dssp HHHHHHHHT---TCCEEEEECHHHHTSHHHHTTCSEEEESSHHHHHHHHHHHH--------------------------- T ss_pred HHHHHHHHC---CCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCHHHHHCC--------------------------- T ss_conf 999999864---99867884807886540015799999776465204342215--------------------------- Q ss_pred HHHHHHHHHHCCHHHCCCEEEEEECCEEE-EEC---------CCCCHHHHHHHHHHHHHHHHCC Q ss_conf 99999999726968708746742161489-838---------8998689999999999999607 Q gi|254780498|r 281 KKSLREVKEGFDPRNFNGGVLLGVDGLVV-KGH---------GSSDAKSIFNVLGIAHNMSQNG 334 (364) Q Consensus 281 ~~~l~~~~~~~d~~~~gGa~llGl~g~vi-k~H---------G~s~~~a~~~ai~~a~~~~~~~ 334 (364) -.-|=-+-|||.=+-. --| |-+++.++.+||+.|.+++++. T Consensus 282 -------------f~~~VnvtlGLp~iRtSpdHGTA~dIagkg~A~~~s~~~Ai~~a~~~~~~r 332 (334) T 3lxy_A 282 -------------FGRAVNITLGLPFIRTSVDHGTALELAATGTADVGSFITALNLAIKMINNS 332 (334) T ss_dssp -------------TTCCEEEEESSSSCEEEESSCCCGGGTTTTCSCCHHHHHHHHHHHHHHHHC T ss_pred -------------CCCCEEEECCCCEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHC T ss_conf -------------776679973899568789987166661789899799999999999999743 No 10 >2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural genomics, PSI-2; 2.30A {Salmonella typhimurium LT2} Probab=98.14 E-value=0.0005 Score=43.94 Aligned_cols=265 Identities=16% Similarity=0.176 Sum_probs=151.6 Q ss_pred EEEEEECCC--CCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCC----------------CCEEEECCC Q ss_conf 399997468--77781777999999998579917999789899999986269751----------------557997785 Q gi|254780498|r 13 DTISLDLMG--GDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLK----------------ERSCFHHCE 74 (364) Q Consensus 13 ~kIAVDaMG--GD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~----------------~ri~Ii~a~ 74 (364) .+|||- || .--||+.+++.... .+.....++++|+.+.++....+.-... ..+.+++.+ T Consensus 7 k~IaIT-~GDPaGIGpEIilKal~~--~~~~~~~~vvig~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~v~d~~ 83 (330) T 2hi1_A 7 KTVAIT-MGDPAGIGPEIIVKALSE--DGLNGAPLVVIGCLATLKRLQAKGITPNVELRAIERVAEARFAPGIIHVIDEP 83 (330) T ss_dssp CCEEEE-CCCTTTTHHHHHHHHHTS--TTTTTCSEEEEECHHHHHHHHHTTSSCCCEEEEESSGGGCCCCTTEEEEEECC T ss_pred CEEEEE-CCCCCHHHHHHHHHHHHC--CCCCCCCEEEEECHHHHHHHHHHCCCCCCEEEECCCHHHHHCCCCEEEEECCC T ss_conf 918998-998627389999999967--35048998999789999999997589995034368866630678815773155 Q ss_pred C----CCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHH------HHHCCCCCCCCCCCHHHCC Q ss_conf 2----0177830679997137642799999998549953999706-426788888------7532255676322001105 Q gi|254780498|r 75 V----SIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAG-NTGALIAMA------RLCLSRISGVDRPSLAAFW 143 (364) Q Consensus 75 ~----vI~mde~P~~AlR~kK~~SSm~~a~~lvk~g~aDa~VSaG-nTGA~la~a------~~~lg~i~Gv~RPala~~~ 143 (364) . .+.....-..+=+-. -.|+..|++++++|++||+|.+= |-.++-.++ +.+|..+-+...+. |.++ T Consensus 84 ~~~~~~~~~G~~~~~~g~~a--~~~l~~A~~~~~~g~~dalVT~PInK~~i~~aG~~f~GHTE~La~~~~~~~~~-Mml~ 160 (330) T 2hi1_A 84 LAQPEALEAGKVQAQAGDLA--YRCVKRATELALRGDVQAIATAPLNKEALHLAGHNYPGHTELLATLTHSRDYA-MVLY 160 (330) T ss_dssp CSCGGGCCTTSCCHHHHHHH--HHHHHHHHHHHHTTSCSEEEECCCCHHHHHHTTCCCSSHHHHHHHHTTCCCCE-EEEE T ss_pred CCCCCCCCCCCCHHHHHHHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHCCCCCHH-HHHC T ss_conf 45564333575305668999--99999999997438861798378447789764899786518877640489716-5413 Q ss_pred CCCCCCEEEE-------ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE----CCCCCCCCCHH---HHHHHH Q ss_conf 5889845998-------613277789899999999999999985689996589984----04555556579---999999 Q gi|254780498|r 144 PTVKGKCIIL-------DVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN----VGTEEIKGNDV---LQESAR 209 (364) Q Consensus 144 Pt~~g~~vll-------D~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN----iG~E~~KG~~~---~kea~~ 209 (364) +.+=+++++ |+-.++ +.+.+.+...+-..+.|. +++.+||++++- -|+.-.-|+|. +.-|-+ T Consensus 161 -~~~LrV~lvTtHIpLkdV~~~i--t~~~I~~~i~l~~~~lk~-~~i~~PrIaV~GLNPHAGE~G~~G~EE~~iI~Pai~ 236 (330) T 2hi1_A 161 -TDKLKVIHVSTHIALRKFLDTL--STARVETVIGIADTFLKR-VGYVKPRIAVAGVNPHAGENGLFGDEETRILTPAIT 236 (330) T ss_dssp -CSSCEEEESCCSSCHHHHHHHC--CHHHHHHHHHHHHHHHHH-TTCSSCEEEEECSSGGGSSTTSCCHHHHHTHHHHHH T ss_pred -CCCCEEEECCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHH-HCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH T ss_conf -7986588524787599998645--177899999999999764-005698546663289975556555677776888999 Q ss_pred HHHHCCCCCCCEECCCCHHHCC----CCCCCEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 9740245713200234554532----45683899755-127889999888899999999986322208899999989999 Q gi|254780498|r 210 LLRGECCGAFKYKGFIEANDIA----KGFVDVIVTEG-FSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSL 284 (364) Q Consensus 210 LL~~~~~~~~nF~GniEg~~i~----~g~~DVvV~DG-FtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l 284 (364) .|++. .++..|..-++-+| .++.|+|||== =.|-+.+|+.. T Consensus 237 ~~~~~---gi~~~GP~paDt~F~~~~~~~~D~vlaMYHDQglip~K~l~------------------------------- 282 (330) T 2hi1_A 237 DARAK---GMDVYGPCPPDTVFLQAYEGQYDMVVAMYHDQGHIPLKLLG------------------------------- 282 (330) T ss_dssp HHHTT---TCEEEEEECHHHHHHHHHTTSCSEEEESSHHHHHHHHHHCC------------------------------- T ss_pred HHHHC---CCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCHHHHHHCC------------------------------- T ss_conf 99975---99888998803788874236999999776464116465335------------------------------- Q ss_pred HHHHHHCCHHHCCCEEEEEECCEEE-EEC---------CCCCHHHHHHHHHHHHHH Q ss_conf 9999726968708746742161489-838---------899868999999999999 Q gi|254780498|r 285 REVKEGFDPRNFNGGVLLGVDGLVV-KGH---------GSSDAKSIFNVLGIAHNM 330 (364) Q Consensus 285 ~~~~~~~d~~~~gGa~llGl~g~vi-k~H---------G~s~~~a~~~ai~~a~~~ 330 (364) -..|=-+-|||.=+.. -.| |.++..++.+||+.|.++ T Consensus 283 ---------f~~~Vn~TlGLp~iRtSpdHGTa~diagk~~a~~~s~~~Ai~~a~~l 329 (330) T 2hi1_A 283 ---------FYDGVNITAGLPFIRTSADHGTAFDIAWTGKAKSESMAVSIKLAMQL 329 (330) T ss_dssp ----------CCSEEEEETSSSEEEEESCCCCTTTTTTTCCCCHHHHHHHHHHHHH T ss_pred ---------CCCCEEEECCCCEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf ---------78777996699935778998716666168989869999999999986 No 11 >1qgo_A CBIK protein, anaerobic cobalamine biosynthetic cobalt chelatase; vitamin B12, metal ION chelation, cobalt precorrin; 2.40A {Salmonella typhimurium LT2} SCOP: c.92.1.2 Probab=65.03 E-value=6.5 Score=17.97 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=18.3 Q ss_pred EEEECCCCCC--CCHHHHHHHHHHHHH-CCCCEEEE Q ss_conf 9997468777--817779999999985-79917999 Q gi|254780498|r 15 ISLDLMGGDL--GARDLILGASKFLEA-HPRIRFLM 47 (364) Q Consensus 15 IAVDaMGGD~--~P~~vi~Ga~~al~~-~~~i~iiL 47 (364) |-+=..|.-+ +.+.++++....+++ .|++.+.. T Consensus 5 illv~~GS~~~~~~~~~i~~~~~~v~~~~pd~~V~~ 40 (264) T 1qgo_A 5 LLVVSFGTSYHDTCEKNIVACERDLAASCPDRDLFR 40 (264) T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHHHTCTTSEEEE T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEE T ss_conf 999978999657799999999999998888991897 No 12 >2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1 Probab=61.27 E-value=4.8 Score=18.82 Aligned_cols=178 Identities=15% Similarity=0.215 Sum_probs=95.8 Q ss_pred CEEEEECCHH---HHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCHHH Q ss_conf 1799978989---9999986269751557997785201778306799971376427999999985499539997064267 Q gi|254780498|r 43 IRFLMYGDAK---VCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGA 119 (364) Q Consensus 43 i~iiLvGdee---~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR~kK~~SSm~~a~~lvk~g~aDa~VSaGnTGA 119 (364) -.+.+++... ..+...+.+.. ...++++...- |..... +-+.+..+..|+++|.|.|++ T Consensus 14 p~i~~~~~srL~~l~~~i~~e~~~-~a~i~v~~~~~-----edav~~------------~~~~~~~~~~DviISRG~ta~ 75 (225) T 2pju_A 14 PVIWTVSVTRLFELFRDISLEFDH-LANITPIQLGF-----EKAVTY------------IRKKLANERCDAIIAAGSNGA 75 (225) T ss_dssp CEEEEECCHHHHHHHHHHHTTTTT-TCEEEEECCCH-----HHHHHH------------HHHHTTTSCCSEEEEEHHHHH T ss_pred CEEEEEEHHHHHHHHHHHHHHHCC-CCEEEEEECCH-----HHHHHH------------HHHHHHCCCCCEEEECCHHHH T ss_conf 889998679999999999997446-75699982747-----899999------------999986499869996856899 Q ss_pred HHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC Q ss_conf 88888753225567632200110558898459986132777898999999999999999856899965899840455555 Q gi|254780498|r 120 LIAMARLCLSRISGVDRPSLAAFWPTVKGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLNVGTEEIK 199 (364) Q Consensus 120 ~la~a~~~lg~i~Gv~RPala~~~Pt~~g~~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLNiG~E~~K 199 (364) ++.-. ++-| ++ .+.++..++++ ++.+. ....+|||+.+.+.- T Consensus 76 ~Ir~~---------~~iP------------VV------eI~vs~~Dil~------aL~~a--~~~~~kIavVgf~~~--- 117 (225) T 2pju_A 76 YLKSR---------LSVP------------VI------LIKPSGYDVLQ------FLAKA--GKLTSSIGVVTYQET--- 117 (225) T ss_dssp HHHTT---------CSSC------------EE------EECCCHHHHHH------HHHHT--TCTTSCEEEEEESSC--- T ss_pred HHHHH---------CCCC------------EE------EEECCHHHHHH------HHHHH--HHHCCCEEEEECCCC--- T ss_conf 99985---------8998------------89------97078768999------99999--975898899937640--- Q ss_pred CCHHHHHHHHHHHHCCCCCCCEECCCCHHHC---C----CCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH Q ss_conf 6579999999974024571320023455453---2----45683899755127889999888899999999986322208 Q gi|254780498|r 200 GNDVLQESARLLRGECCGAFKYKGFIEANDI---A----KGFVDVIVTEGFSGNIAIKAAEGAVRHISGVLQKSLNRTLL 272 (364) Q Consensus 200 G~~~~kea~~LL~~~~~~~~nF~GniEg~~i---~----~g~~DVvV~DGFtGNi~LKt~EG~~~~~~~~lk~~~~~~~~ 272 (364) ....+.--++|.- ++.+.=+-...|+ . ..-+||||.|+.+-+++-+ T Consensus 118 -~~~~~~~~~ll~~----~i~~~~~~~~~e~~~~v~~l~~~G~~vVVG~~~~~~~A~~---------------------- 170 (225) T 2pju_A 118 -IPALVAFQKTFNL----RLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEE---------------------- 170 (225) T ss_dssp -CHHHHHHHHHHTC----CEEEEEESSHHHHHHHHHHHHHTTCCEEEESHHHHHHHHH---------------------- T ss_pred -CHHHHHHHHHHCC----CEEEEEECCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHH---------------------- T ss_conf -3699999999699----4499996688999999999998699799988589999998---------------------- Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHCCHHH Q ss_conf 89999998999999997269687087467421614898388998689999999999999607068 Q gi|254780498|r 273 SRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQNGFID 337 (364) Q Consensus 273 ~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~~~~~~~~~ 337 (364) +|++++.+- |. .++..|+..|.++++.-..+ T Consensus 171 -----------------------------~Gl~~vli~----Sg-eSI~~Ai~~Al~~ar~~~~e 201 (225) T 2pju_A 171 -----------------------------AGMTGIFIY----SA-ATVRQAFSDALDMTRMSLRH 201 (225) T ss_dssp -----------------------------TTSEEEESS----CH-HHHHHHHHHHHHHHHHC--- T ss_pred -----------------------------CCCCEEEEC----CH-HHHHHHHHHHHHHHHHHHHH T ss_conf -----------------------------499789975----88-99999999999999999999 No 13 >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Probab=58.43 E-value=3.4 Score=19.78 Aligned_cols=89 Identities=22% Similarity=0.282 Sum_probs=47.3 Q ss_pred CCCCCHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHH Q ss_conf 63220011055889845998613277789899999999999999985689996589984045555565799999999740 Q gi|254780498|r 134 VDRPSLAAFWPTVKGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRG 213 (364) Q Consensus 134 v~RPala~~~Pt~~g~~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~ 213 (364) ..+|+|...+|..+|.. +||+|.-.--....|++ .| +..+.+++ + . ...++.|-+... T Consensus 31 ~~~~~i~~~lp~~~g~~-VLDiGcG~G~~~~~l~~---~g---~~~v~giD--------~----S--~~~i~~a~~~~~- 88 (253) T 3g5l_A 31 GEWHELKKMLPDFNQKT-VLDLGCGFGWHCIYAAE---HG---AKKVLGID--------L----S--ERMLTEAKRKTT- 88 (253) T ss_dssp HHHHHHHTTCCCCTTCE-EEEETCTTCHHHHHHHH---TT---CSEEEEEE--------S----C--HHHHHHHHHHCC- T ss_pred HHHHHHHHHCCCCCCCE-EEEECCCCCHHHHHHHH---CC---CCEEEEEE--------C----C--CHHHHHHHHHHC- T ss_conf 88999998468789698-99983778499999996---49---99899994--------8----5--065689987403- Q ss_pred CCCCCCCEE-CCCCHHHCCCCCCCEEEECCHHHH Q ss_conf 245713200-234554532456838997551278 Q gi|254780498|r 214 ECCGAFKYK-GFIEANDIAKGFVDVIVTEGFSGN 246 (364) Q Consensus 214 ~~~~~~nF~-GniEg~~i~~g~~DVvV~DGFtGN 246 (364) ...+.|+ +.+|--.+..+..|+|+|-+-... T Consensus 89 --~~~~~~~~~d~~~l~~~~~~fD~V~~~~~l~~ 120 (253) T 3g5l_A 89 --SPVVCYEQKAIEDIAIEPDAYNVVLSSLALHY 120 (253) T ss_dssp --CTTEEEEECCGGGCCCCTTCEEEEEEESCGGG T ss_pred --CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE T ss_conf --44432222222456656755553421111331 No 14 >1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A Probab=47.85 E-value=13 Score=16.17 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=48.7 Q ss_pred HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEEC---CCCCCCCHHHHHHHHHHH Q ss_conf 99999985499539997064267888887532255676322001105588984599861---327778989999999999 Q gi|254780498|r 97 WRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKCIILDV---GATIGSTVSHMVQLSILG 173 (364) Q Consensus 97 ~~a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g~~vllD~---GAN~d~~~~~L~qfA~mG 173 (364) ..+..+.+.|.+|+++| +.+=.+.-.+..++ ..++..+......|. =.....+|+++++||+|| T Consensus 155 aq~a~l~~~g~~d~i~s-~D~Dll~~g~~~vi------------~~~~~~~~~~~~~~~~~~~~~~~~~~~q~id~~il~ 221 (326) T 1a76_A 155 AQASYMAKKGDVWAVVS-QDYDALLYGAPRVV------------RNLTTTKEMPELIELNEVLEDLRISLDDLIDIAIFM 221 (326) T ss_dssp HHHHHHHHTTSSSEEEC-SSSGGGGGTCSEEE------------ESSSSCSSCCEEEEHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHHHHHHCCCEEEEEC-CCCCCCCCCCCEEE------------EECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHEE T ss_conf 99999996598145415-98552135888699------------935766565431014665543025879999878027 Q ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHC Q ss_conf 99999856899965899840455555657999999997402 Q gi|254780498|r 174 SFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGE 214 (364) Q Consensus 174 s~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~ 214 (364) -.-+ ..-|+ |.|| .+.|++|+++. T Consensus 222 g~d~-n~~gi--~giG--------------~k~A~~li~~~ 245 (326) T 1a76_A 222 GTDY-NPGGV--KGIG--------------FKRAYELVRSG 245 (326) T ss_dssp CCTT-STTTT--TTCC--------------HHHHHHHHHHT T ss_pred CCCC-CCCCC--CCCC--------------HHHHHHHHHHC T ss_conf 9645-78899--9424--------------99999999984 No 15 >1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A Probab=47.75 E-value=12 Score=16.28 Aligned_cols=96 Identities=17% Similarity=0.140 Sum_probs=47.2 Q ss_pred HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCC----CCEEEEECC---CCCCCCHHHHHHH Q ss_conf 999999854995399970642678888875322556763220011055889----845998613---2777898999999 Q gi|254780498|r 97 WRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVK----GKCIILDVG---ATIGSTVSHMVQL 169 (364) Q Consensus 97 ~~a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~----g~~vllD~G---AN~d~~~~~L~qf 169 (364) ..+..+.+.|.+|+++| ..+=+++-.+..++..+.-- ... ..+... ...-+.|.- .....+|+++++| T Consensus 155 aq~a~l~~~g~vd~v~s-~D~D~l~~g~~~v~~~l~~~---~~~-~~~~~~~~~~~~~~~~~~~~v~~~lgl~~~q~id~ 229 (340) T 1b43_A 155 AQAAYMAAKGSVYASAS-QDYDSLLFGAPRLVRNLTIT---GKR-KLPGKNVYVEIKPELIILEEVLKELKLTREKLIEL 229 (340) T ss_dssp HHHHHHHHHTSSSEEEC-SSSHHHHTTCSEEEESTTTC---EEE-ECTTSSCEEEECCEEEEHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHHCCCEEEEEE-CCCCHHHCCCCCEEEEEECC---CCC-CCCCCCCCCCCCEEEEEHHHHHHHCCCCHHHHHHH T ss_conf 99999997598589992-37213211466417886757---764-46676653323128972999788639999999899 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHC Q ss_conf 999999999856899965899840455555657999999997402 Q gi|254780498|r 170 SILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGE 214 (364) Q Consensus 170 A~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~ 214 (364) |+||-.-+- .-|+ |.|| .+.|++|+++. T Consensus 230 all~G~dyn-~~gi--~giG--------------~ktA~~li~~~ 257 (340) T 1b43_A 230 AILVGTDYN-PGGI--KGIG--------------LKKALEIVRHS 257 (340) T ss_dssp HHHHCCTTS-TTCS--TTCC--------------HHHHHHHHHTC T ss_pred HHHCCCCCC-CCCC--CCCC--------------HHHHHHHHHHH T ss_conf 997187568-5557--9827--------------99999999995 No 16 >2rdc_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Geobacter sulfurreducens pca} Probab=41.80 E-value=16 Score=15.58 Aligned_cols=58 Identities=14% Similarity=0.133 Sum_probs=45.6 Q ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99965899840455555657999999997402457132002345545324568389975512788999988889999999 Q gi|254780498|r 183 INCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKAAEGAVRHISGV 262 (364) Q Consensus 183 ~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~LKt~EG~~~~~~~~ 262 (364) ...|.-..|+.=+|..||++.+-+-|+.+-.... .--++++.+||+.....+. T Consensus 2 ~~~~~~~v~s~v~~~~k~~e~~m~RyK~v~~i~k---------------------------~Deva~~llE~lIDsat~Y 54 (153) T 2rdc_A 2 MQQPTASVVSYVAEYHKATETTMGRYKKVIEITG---------------------------HDEVAAKLLEGLIDAGTRY 54 (153) T ss_dssp -------------------CCHHHHHHHHHHHHT---------------------------TCHHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------------------CCHHHHHHHHHHHHHHHHH T ss_conf 8775128999999997323999999999998716---------------------------7199999999999999999 Q ss_pred HHHHH Q ss_conf 99863 Q gi|254780498|r 263 LQKSL 267 (364) Q Consensus 263 lk~~~ 267 (364) +.... T Consensus 55 ~~kV~ 59 (153) T 2rdc_A 55 FSKVV 59 (153) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 17 >1su8_A CODH 2, carbon monoxide dehydrogenase 2; nickel, cluster C, oxidoreductase; HET: NFS; 1.10A {Carboxydothermus hydrogenoformans} SCOP: e.26.1.2 PDB: 1su6_A* 1su7_A* 1suf_A* 3i39_X 3b52_X 3b53_X 3b51_X Probab=40.35 E-value=16 Score=15.44 Aligned_cols=86 Identities=13% Similarity=0.232 Sum_probs=51.5 Q ss_pred CCCCCCHHHHHHHHH-----------HHHHHHHHHCCCCCCEEEEEECCCCCCCC-------CH------H---HHHHHH Q ss_conf 277789899999999-----------99999998568999658998404555556-------57------9---999999 Q gi|254780498|r 157 ATIGSTVSHMVQLSI-----------LGSFFARSVAGINCPSIGLLNVGTEEIKG-------ND------V---LQESAR 209 (364) Q Consensus 157 AN~d~~~~~L~qfA~-----------mGs~yak~~~~~~~PrVgLLNiG~E~~KG-------~~------~---~kea~~ 209 (364) -|.|-+|.+|..-++ ++....-.+||.+.|...-.|.|+=+.+. .+ + .++--+ T Consensus 199 tg~d~D~~~l~~~~lr~Glad~~g~~l~~~~~di~fG~P~p~~~~v~lGvl~~~~vnIlv~GH~p~l~~~iv~~~~el~~ 278 (636) T 1su8_A 199 MGCDADAQNLLLGGLRCSLADLAGCYMGTDLADILFGTPAPVVTESNLGVLKADAVNVAVHGHNPVLSDIIVSVSKEMEN 278 (636) T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEESGGGCCTTSEEEEEESSCHHHHHHHHHHHHHTHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHH T ss_conf 18898999999999988852468999999988985589987055135554479986599979983278999999999999 Q ss_pred HHHHCCCCCCCEECCCC-H-----------------HH--CCCCCCCEEEECC Q ss_conf 97402457132002345-5-----------------45--3245683899755 Q gi|254780498|r 210 LLRGECCGAFKYKGFIE-A-----------------ND--IAKGFVDVIVTEG 242 (364) Q Consensus 210 LL~~~~~~~~nF~GniE-g-----------------~~--i~~g~~DVvV~DG 242 (364) ++++.....||.+|-+. + ++ +++|.+|++|.|- T Consensus 279 ~ak~~ga~GI~v~G~cCTg~E~l~r~g~p~~~n~~~~E~~~~tGaiD~~vvD~ 331 (636) T 1su8_A 279 EARAAGATGINVVGICCTGNEVLMRHGIPACTHSVSQEMAMITGALDAMILDY 331 (636) T ss_dssp HHHHTTCSCEEEEEEHHHHHHHHHHHCCCEEECGGGTHHHHHTSCEEEEEECS T ss_pred HHHHCCCCCEEEEEEECCHHHHHHCCCCCCCCCHHHHHHHHCCCCCCEEEEEC T ss_conf 99974899649998715588876215886333758778865678855389855 No 18 >1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, protein structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} SCOP: c.92.1.3 PDB: 2dj5_A Probab=39.31 E-value=17 Score=15.34 Aligned_cols=47 Identities=11% Similarity=-0.008 Sum_probs=22.0 Q ss_pred HCCCCCCEEEEE--ECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCC Q ss_conf 568999658998--40455555657999999997402457132002345 Q gi|254780498|r 180 VAGINCPSIGLL--NVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIE 226 (364) Q Consensus 180 ~~~~~~PrVgLL--NiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniE 226 (364) ++...+.|.||| .-||....+++.+.+-.+.+++......-..||+| T Consensus 17 ~~~~~~mk~gllLvgHGSr~~~~~~~~~~la~~l~~~~~~~~V~~~flE 65 (156) T 1tjn_A 17 LYFQGHMRRGLVIVGHGSQLNHYREVMELHRKRIEESGAFDEVKIAFAA 65 (156) T ss_dssp ------CCEEEEEEECCTTSTTHHHHHHHHHHHHHHHTSSSEEEEEECS T ss_pred CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEE T ss_conf 3267889856999958999878999999999999967899819789876 No 19 >3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Marinobacter aquaeolei} Probab=37.98 E-value=18 Score=15.21 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=18.6 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC Q ss_conf 59986132777898999999999999999856899965899840 Q gi|254780498|r 150 CIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLNV 193 (364) Q Consensus 150 ~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLNi 193 (364) .+++.=|.. +|+.=-+|..+.....+. ++ ...||.|.. T Consensus 8 vllv~HGS~---~~~~~~~~~~la~~l~~~-~~--~v~~~fle~ 45 (126) T 3lyh_A 8 IILLAHGSS---DARWCETFEKLAEPTVES-IE--NAAIAYMEL 45 (126) T ss_dssp EEEEECCCS---CHHHHHHHHHHHHHHHHH-ST--TCEEEESSS T ss_pred EEEEECCCC---CHHHHHHHHHHHHHHHHH-CC--CEEEEEEEC T ss_conf 999978999---878999999999999965-89--847999826 No 20 >3gx1_A LIN1832 protein; APC63308.2, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262} Probab=36.38 E-value=17 Score=15.27 Aligned_cols=10 Identities=20% Similarity=0.295 Sum_probs=3.5 Q ss_pred HHHHHHHHCC Q ss_conf 8888875322 Q gi|254780498|r 120 LIAMARLCLS 129 (364) Q Consensus 120 ~la~a~~~lg 129 (364) +..++.+++| T Consensus 20 l~~~~~~i~G 29 (130) T 3gx1_A 20 MVETVQELLS 29 (130) T ss_dssp HHHHHHHHHT T ss_pred HHHHHHHHCC T ss_conf 9999999749 No 21 >2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein structure initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: c.87.1.8 Probab=34.99 E-value=17 Score=15.34 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=35.5 Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHC--CCCCCCEEEECCHHHHHHHHHHHH Q ss_conf 658998404555556579999999974024571320023455453--245683899755127889999888 Q gi|254780498|r 186 PSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDI--AKGFVDVIVTEGFSGNIAIKAAEG 254 (364) Q Consensus 186 PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i--~~g~~DVvV~DGFtGNi~LKt~EG 254 (364) |.+-|+-+|.... +.. .+...+.+++....++.|.|++...++ +-..+|+.|+=....+.-+...|. T Consensus 49 ~~~~l~ivG~~~~-~~~-~~~~~~~l~~~~~~~V~~~g~~~~~el~~~~~~sd~~i~~s~~e~~~~~~~Ea 117 (177) T 2f9f_A 49 QDEKLYIVGWFSK-GDH-AERYARKIMKIAPDNVKFLGSVSEEELIDLYSRCKGLLCTAKDEDFGLTPIEA 117 (177) T ss_dssp TTSCEEEEBCCCT-TST-HHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHHCSEEEECCSSCCSCHHHHHH T ss_pred CCCCEEEEEECCC-HHH-HHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCHHHHH T ss_conf 8982899985785-569-99999999725899899917899999999986431046774222167269999 No 22 >1z34_A Purine nucleoside phosphorylase; alpha-beta-alpha sandwich, transferase; HET: 2FD; 2.40A {Trichomonas vaginalis} PDB: 1z33_A* 1z35_A* 1z36_A* 1z37_A* 1z38_A* 1z39_A* 2i4t_A* 2isc_A* Probab=34.26 E-value=19 Score=15.02 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=36.8 Q ss_pred EEEEECCHHHHHHHHHHCCCCCCCEEEE-CCCCCCCC----CCHHHHHHHHCCCCHHHHHHHH-HHHCCCCEEEEEECCH Q ss_conf 7999789899999986269751557997-78520177----8306799971376427999999-9854995399970642 Q gi|254780498|r 44 RFLMYGDAKVCLPILDSHPLLKERSCFH-HCEVSIAM----DERPADALRRGRNVSSMWRAIE-AVKKNQAASVVTAGNT 117 (364) Q Consensus 44 ~iiLvGdee~I~~~l~~~~~~~~ri~Ii-~a~~vI~m----de~P~~AlR~kK~~SSm~~a~~-lvk~g~aDa~VSaGnT 117 (364) .++++||+++.+.+.+.+- +..+.+ +--++... +.++...+..+=+..+...+++ +...-.++.++..|.. T Consensus 15 ~vi~~Gdp~Ra~~ia~~~~---~~~~~~~~~r~~~~ytG~~~g~~V~v~~~GiG~~~aa~~~~eLi~~~~~~~iI~~Gta 91 (235) T 1z34_A 15 TVLMCGDPLRAKLIAETYL---ENPKLVNNVRGIQGYTGTYKGKPISVMGHGMGLPSICIYAEELYSTYKVKTIIRVGTC 91 (235) T ss_dssp EEEEESCHHHHHHHHHHHC---EEEEEEECGGGCCEEEEEETTEEEEEEECCSSHHHHHHHHHHHHHTSCCCEEEEEEEE T ss_pred EEEECCCHHHHHHHHHHHC---CCCEEEEEECCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 5996799799999999870---3868953207848999999999999998897889999999999984798489993544 Q ss_pred HHH Q ss_conf 678 Q gi|254780498|r 118 GAL 120 (364) Q Consensus 118 GA~ 120 (364) |++ T Consensus 92 G~l 94 (235) T 1z34_A 92 GAI 94 (235) T ss_dssp EEC T ss_pred CCC T ss_conf 445 No 23 >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} Probab=34.06 E-value=21 Score=14.82 Aligned_cols=74 Identities=22% Similarity=0.306 Sum_probs=41.4 Q ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEC- Q ss_conf 8898459986132777898999999999999999856899965899840455555657999999997402457132002- Q gi|254780498|r 145 TVKGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKG- 223 (364) Q Consensus 145 t~~g~~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~G- 223 (364) ..+|+ +.||+||.+-= |.++++..-.-+|==.-+|... -+.-|++++ .-.++-+ T Consensus 35 ~~~gk-~~lDiGaStGG--------------FTd~lLq~GA~~V~aVDVG~~q---------L~~~lr~d~-rV~~~E~~ 89 (232) T 3opn_A 35 EINGK-TCLDIGSSTGG--------------FTDVMLQNGAKLVYALDVGTNQ---------LAWKIRSDE-RVVVMEQF 89 (232) T ss_dssp CCTTC-EEEEETCTTSH--------------HHHHHHHTTCSEEEEECSSCCC---------CCHHHHTCT-TEEEECSC T ss_pred CCCCC-EEEECCCCCCH--------------HHHHHHHCCCCEEEEEECCCHH---------HHHHHHCCC-CCCCHHHH T ss_conf 86899-89985889858--------------9999998098789999437034---------307774398-70320210 Q ss_pred ---CCCHHHCCCCCCCEEEECC-H Q ss_conf ---3455453245683899755-1 Q gi|254780498|r 224 ---FIEANDIAKGFVDVIVTEG-F 243 (364) Q Consensus 224 ---niEg~~i~~g~~DVvV~DG-F 243 (364) +++..++.....|++|||= | T Consensus 90 n~R~~~~~~~~~~~~Dlvv~DvSF 113 (232) T 3opn_A 90 NFRNAVLADFEQGRPSFTSIDVSF 113 (232) T ss_dssp CGGGCCGGGCCSCCCSEEEECCSS T ss_pred CCCCCCHHHCCCCCCCEEEECCCH T ss_conf 144553333046888789970651 No 24 >3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus} Probab=33.06 E-value=21 Score=14.72 Aligned_cols=92 Identities=18% Similarity=0.096 Sum_probs=46.4 Q ss_pred CCEEEEEEECCCCCCCCHH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHH Q ss_conf 9823999974687778177--79999999985799179997898999999862697515579977852017783067999 Q gi|254780498|r 10 GNVDTISLDLMGGDLGARD--LILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADAL 87 (364) Q Consensus 10 ~~m~kIAVDaMGGD~~P~~--vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~Al 87 (364) ++.||||| .+..+.++.. +++....++.+. ..+++=+|.. +++. ..-+-|-.+ T Consensus 1 ~~~MKIAl-~~d~s~a~kn~~I~~~Lk~~l~~~-G~eV~D~G~~---------------------~e~~-~~~dYpd~a- 55 (214) T 3ono_A 1 SNAMKIAL-MMENSQAAKNAMVAGELNSVAGGL-GHDVFNVGMT---------------------DEND-HHLTYIHLG- 55 (214) T ss_dssp -CCCEEEE-CCCGGGGGGHHHHHHHHHHHHHHT-TCEEEECSCS---------------------STTS-SCCCHHHHH- T ss_pred CCCCEEEE-ECCCCCHHHHHHHHHHHHHHHHHC-CCEEEECCCC---------------------CCCC-CCCCHHHHH- T ss_conf 99827998-557665005589999999999967-9989967899---------------------9988-879877999- Q ss_pred HHCCCCHHHHHHHHHHHCCCCEEEEE-ECC-HHHHHHHHHHHCCCCCCCCCCCHHH Q ss_conf 71376427999999985499539997-064-2678888875322556763220011 Q gi|254780498|r 88 RRGRNVSSMWRAIEAVKKNQAASVVT-AGN-TGALIAMARLCLSRISGVDRPSLAA 141 (364) Q Consensus 88 R~kK~~SSm~~a~~lvk~g~aDa~VS-aGn-TGA~la~a~~~lg~i~Gv~RPala~ 141 (364) ..+..+|.+|++|-.|. ||+ .|..|++- +.||| |.|++. T Consensus 56 ---------~~va~~v~~g~~d~gIl~CGTG~G~siaAN-----K~~GI-raal~~ 96 (214) T 3ono_A 56 ---------IMASILLNSKAVDFVVTGCGTGQGALMSCN-----LHPGV-VCGYCL 96 (214) T ss_dssp ---------HHHHHHHHTTSCSEEEEEESSSHHHHHHHH-----TSTTC-CEEECS T ss_pred ---------HHHHHHHHCCCCCEEEEECCCHHHHHHHHH-----CCCCE-EEEEEC T ss_conf ---------999999967998769996784698999971-----78985-999868 No 25 >1oao_A CODH, carbon monoxide dehydrogenase beta subunit; electron transfer, oxidoreductase, acetyl-COA formation, WOOD/ljungdahl pathway; 1.90A {Moorella thermoacetica} SCOP: e.26.1.2 PDB: 1mjg_A 2z8y_A 3i01_A 3i04_A Probab=32.76 E-value=22 Score=14.68 Aligned_cols=88 Identities=15% Similarity=0.272 Sum_probs=49.7 Q ss_pred CCCCCCCCHHHHHHHHH-----------HHHHHHHHHCCCCCCEEEEEECCCCCCC-------CCH------HH---HHH Q ss_conf 13277789899999999-----------9999999856899965899840455555-------657------99---999 Q gi|254780498|r 155 VGATIGSTVSHMVQLSI-----------LGSFFARSVAGINCPSIGLLNVGTEEIK-------GND------VL---QES 207 (364) Q Consensus 155 ~GAN~d~~~~~L~qfA~-----------mGs~yak~~~~~~~PrVgLLNiG~E~~K-------G~~------~~---kea 207 (364) +-.|.|.+|.+|..-++ ++....-.+||.+.|...-.|.|+=..+ |.+ ++ ++- T Consensus 219 t~tg~d~D~~~l~~~~Lr~Glad~~g~~l~~~~~dilfG~P~p~~v~vnlGvl~~~~vnIlV~GH~p~l~~~iv~~~~el 298 (674) T 1oao_A 219 AHMGMDNDPVNLVFSAIRVALADYTGEHIATDFSDILFGTPQPVVSEANMGVLDPDQVNFVLHGHNPLLSEIIVQAAREM 298 (674) T ss_dssp TSTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEESGGGCCTTSEEEEEESSCHHHHHHHHHHHHHT T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH T ss_conf 86189999999999999987644689999998888745999872770477523689866999899834789999999999 Q ss_pred HHHHHHCCCCCCCEECCC------------------CHH--HCCCCCCCEEEECC Q ss_conf 999740245713200234------------------554--53245683899755 Q gi|254780498|r 208 ARLLRGECCGAFKYKGFI------------------EAN--DIAKGFVDVIVTEG 242 (364) Q Consensus 208 ~~LL~~~~~~~~nF~Gni------------------Eg~--~i~~g~~DVvV~DG 242 (364) -+++|+.....||.+|-+ -.. .+++|.+|++|.|- T Consensus 299 ~~~ak~~ga~GI~v~G~cCTg~Eml~r~g~p~~Gn~~~qE~~i~tGavD~~vvd~ 353 (674) T 1oao_A 299 EGEAKAAGAKGINLVGICCTGNEVLMRQGIPLVTSFASQELAICTGAIDAMCVDV 353 (674) T ss_dssp HHHHHHTTCSCEEEEEEHHHHHHHHHHHCCCEEECGGGHHHHHTTSCCSEEEECS T ss_pred HHHHHHCCCCCEEEEEEECCHHHHHHCCCCCCCCCHHHHHHHHCCCCCCEEEEEC T ss_conf 9999974899549997615588886406998457568778886379864599736 No 26 >2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-binding, excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus} Probab=30.70 E-value=23 Score=14.47 Aligned_cols=96 Identities=13% Similarity=0.084 Sum_probs=50.8 Q ss_pred HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCC----CCCEEEEEC---CCCCCCCHHHHHHH Q ss_conf 99999985499539997064267888887532255676322001105588----984599861---32777898999999 Q gi|254780498|r 97 WRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTV----KGKCIILDV---GATIGSTVSHMVQL 169 (364) Q Consensus 97 ~~a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~----~g~~vllD~---GAN~d~~~~~L~qf 169 (364) ..+..+.+.|.+|+++| +.+-.++-.+..++..+.. ..-. .+|.. ....-.+|. -.....+|+++++| T Consensus 152 a~~a~l~~~g~vd~IiT-~D~D~l~~g~~~v~~~l~~---~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~gi~~~qfid~ 226 (346) T 2izo_A 152 AEAAYLNKLGLSWAAAS-QDYDAILFGAKRLVRNLTI---TGKR-KLPNKDVYVEIKPELIETEILLKKLGITREQLIDI 226 (346) T ss_dssp HHHHHHHHTTSSSEEEC-SSSHHHHTTCSEEEESSCC---------------CCCCCCEEEEHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHHCCCEEEECC-CCCCEEEECCCCCEEEECC---CCCC-CCCCCCCCCCCCEEEECHHHHHHHCCCCHHHHHHH T ss_conf 99999998698566316-9845574048861477426---8974-46775554544406743999999819999999999 Q ss_pred HHHHHHHHHHHCCCC-CCEEEEEECCCCCCCCCHHHHHHHHHHHHCC Q ss_conf 999999999856899-9658998404555556579999999974024 Q gi|254780498|r 170 SILGSFFARSVAGIN-CPSIGLLNVGTEEIKGNDVLQESARLLRGEC 215 (364) Q Consensus 170 A~mGs~yak~~~~~~-~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~ 215 (364) |+|+-.- ++++ -|.|| .+.|++|+++.. T Consensus 227 ~iL~G~d----yn~~gv~giG--------------~ktA~kli~~~~ 255 (346) T 2izo_A 227 GILIGTD----YNPDGIRGIG--------------PERALKIIKKYG 255 (346) T ss_dssp HHHHCCS----SSTTCSTTCC--------------HHHHHHHHHHSS T ss_pred HHHCCCC----CCCCCCCCCC--------------HHHHHHHHHHHC T ss_conf 9845865----6866689837--------------999999999939 No 27 >2kpm_A Uncharacterized protein; methods development, structural genomics, PSI-2, protein structure initiative; NMR {Nitrosomonas europaea} Probab=28.74 E-value=23 Score=14.57 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=12.2 Q ss_pred HHHHHHHHHHCCHHHCCCEE Q ss_conf 99999999726968708746 Q gi|254780498|r 281 KKSLREVKEGFDPRNFNGGV 300 (364) Q Consensus 281 ~~~l~~~~~~~d~~~~gGa~ 300 (364) ...|.+....|||++||-.= T Consensus 46 G~~l~k~~PdFDpRnYG~~k 65 (105) T 2kpm_A 46 GNYLNKLQPDFDSRLYGYKK 65 (105) T ss_dssp HHHHHHHCTTCCGGGTTCSS T ss_pred HHHHHHHCCCCCCCCCCHHH T ss_conf 99998618899961368645 No 28 >1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7 Probab=28.33 E-value=26 Score=14.21 Aligned_cols=41 Identities=12% Similarity=0.210 Sum_probs=27.4 Q ss_pred CCCCCCEEEEEE--ECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 113898239999--746877781777999999998579917999789 Q gi|254780498|r 6 VLQGGNVDTISL--DLMGGDLGARDLILGASKFLEAHPRIRFLMYGD 50 (364) Q Consensus 6 ~~~~~~m~kIAV--DaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGd 50 (364) ..++..||||+| |..|. ...++.+...+.+.+--.++..|| T Consensus 19 ~~~~~~mMki~viSDiHgn----~~ale~vl~~~~~~~~D~ii~lGD 61 (208) T 1su1_A 19 YFQSNAMMKLMFASDIHGS----LPATERVLELFAQSGAQWLVILGD 61 (208) T ss_dssp ------CCEEEEECCCTTB----HHHHHHHHHHHHHHTCSEEEECSC T ss_pred ECCCCCCCEEEEEEECCCC----HHHHHHHHHHHHHCCCCEEEECCC T ss_conf 4177833189999316899----899999999987569988999166 No 29 >3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Enterococcus faecalis V583} Probab=28.28 E-value=26 Score=14.21 Aligned_cols=10 Identities=30% Similarity=0.152 Sum_probs=5.1 Q ss_pred EEEECCHHHH Q ss_conf 8997551278 Q gi|254780498|r 237 VIVTEGFSGN 246 (364) Q Consensus 237 VvV~DGFtGN 246 (364) +|.||=|.|- T Consensus 67 LILtDL~ggt 76 (139) T 3gdw_A 67 LLLTDMGSLN 76 (139) T ss_dssp EEEECSGGGG T ss_pred EEEEECCCCC T ss_conf 9998578873 No 30 >1jqk_A CODH, carbon monoxide dehydrogenase; rossmann fold, oxidoreductase; 2.80A {Rhodospirillum rubrum} SCOP: e.26.1.2 Probab=27.69 E-value=26 Score=14.14 Aligned_cols=87 Identities=10% Similarity=0.221 Sum_probs=48.1 Q ss_pred CCCCCCCHHHHHHHHH-HH----------HHHHHHHCCCCCCEEEEEECCCCCCC-------CCH------HHHHH---- Q ss_conf 3277789899999999-99----------99999856899965899840455555-------657------99999---- Q gi|254780498|r 156 GATIGSTVSHMVQLSI-LG----------SFFARSVAGINCPSIGLLNVGTEEIK-------GND------VLQES---- 207 (364) Q Consensus 156 GAN~d~~~~~L~qfA~-mG----------s~yak~~~~~~~PrVgLLNiG~E~~K-------G~~------~~kea---- 207 (364) -.|.|.+|++|..-++ +| ....-.+||.+.|...-.|.|+=+.+ |.+ ++..+ T Consensus 202 ~~g~d~D~~~l~~~aLr~Glad~~g~~l~~~~~di~fG~P~p~~~~vnlGvl~~~~vnIlV~GH~p~l~~~i~~~~~~~~ 281 (639) T 1jqk_A 202 HVGCDADPTNLILGGLRVAMADLDGSMLATELSDALFGTPQPVVSAANLGVMKRGAVNIAVNGHNPMLSDIICDVAADLR 281 (639) T ss_dssp STTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEESSCCCCTTEEEEEEESSCHHHHHHHHHHHHHTT T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH T ss_conf 43899999999999999885013799999998898659998626514665447898669998998148899999866699 Q ss_pred HHHHHHCCCCCCCEECCCC-HH-------------------HCCCCCCCEEEECC Q ss_conf 9997402457132002345-54-------------------53245683899755 Q gi|254780498|r 208 ARLLRGECCGAFKYKGFIE-AN-------------------DIAKGFVDVIVTEG 242 (364) Q Consensus 208 ~~LL~~~~~~~~nF~GniE-g~-------------------~i~~g~~DVvV~DG 242 (364) .+++++.....||.+|-+. ++ -+++|.+|++|.|- T Consensus 282 ~~~~~~~~a~GI~v~G~cCTg~E~l~r~g~p~~gn~~~~E~~i~tGa~d~ivvd~ 336 (639) T 1jqk_A 282 DEAIAAGAAEGINIIGICCTGHEVMMRHGVPLATNYLSQELPILTGALEAMVVDV 336 (639) T ss_dssp THHHHTTCTTEEEEEEEHHHHHHHHHHSCCCEEECSTTTTHHHHTTCCCEEEECS T ss_pred HHHHHHCCCCCEEEEEEECCHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEC T ss_conf 9999846688618998735547767513873223589887998659986399756 No 31 >2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum} Probab=26.56 E-value=28 Score=14.02 Aligned_cols=19 Identities=37% Similarity=0.648 Sum_probs=12.2 Q ss_pred HHHHHHHHHHCCHHHCCCE Q ss_conf 9999999972696870874 Q gi|254780498|r 281 KKSLREVKEGFDPRNFNGG 299 (364) Q Consensus 281 ~~~l~~~~~~~d~~~~gGa 299 (364) ..-|.+....|||++||-. T Consensus 33 G~~l~k~~PdFDpR~YG~~ 51 (92) T 2kzv_A 33 GSYLAKNDPSFDPRNWGHG 51 (92) T ss_dssp HHHHHHHCTTCCTTTTCSS T ss_pred HHHHHHHCCCCCCCCCCCC T ss_conf 9999873979995106824 No 32 >2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1 Probab=24.99 E-value=29 Score=13.83 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=32.8 Q ss_pred HHHHHHHCCHHHCCCEEEEEECCEEEEECCCC--CHHHHHHHHHHHHHH-HHCCHHHHHHHHH Q ss_conf 99999726968708746742161489838899--868999999999999-9607068999999 Q gi|254780498|r 284 LREVKEGFDPRNFNGGVLLGVDGLVVKGHGSS--DAKSIFNVLGIAHNM-SQNGFIDMVKDDM 343 (364) Q Consensus 284 l~~~~~~~d~~~~gGa~llGl~g~vik~HG~s--~~~a~~~ai~~a~~~-~~~~~~~~i~~~~ 343 (364) ++.+++. ++--+.+|.||-+-+. |.+ +..++.+||..+.+. ...++.+++++-+ T Consensus 114 l~~l~~~-----~~~eI~vG~NG~IWI~-~~~~~~~i~i~~aI~~~~~~~~~~~l~~~v~~~l 170 (175) T 2ja9_A 114 LKVLAAH-----TKFEVAIGLNGKIWVK-CEELSNTLACYRTIMECCQKNDTAAFKDIAKRQF 170 (175) T ss_dssp HHHHHTT-----CCCEEEEETTTEEEEE-CSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHT T ss_pred HHHHHCC-----CCEEEEEECCCEEEEE-CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 9876106-----8979999548289997-7984479999999999987577778999999999 No 33 >1q1g_A Uridine phosphorylase putative; transition state complex, transferase; HET: MTI; 2.02A {Plasmodium falciparum 3D7} SCOP: c.56.2.1 PDB: 1nw4_A* 3fow_A* Probab=23.24 E-value=32 Score=13.62 Aligned_cols=74 Identities=16% Similarity=0.117 Sum_probs=35.4 Q ss_pred EEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCC----CCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCHHH Q ss_conf 799978989999998626975155799778520177----8306799971376427999999985499539997064267 Q gi|254780498|r 44 RFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAM----DERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGA 119 (364) Q Consensus 44 ~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~m----de~P~~AlR~kK~~SSm~~a~~lvk~g~aDa~VSaGnTGA 119 (364) .++++||+.+.+.+. ++ ..+...+.+.-++... .-.|......+=+..|+..+++.+.+-.++.++..|.+|+ T Consensus 20 ~Vl~~GDP~Ra~~ia-~~--le~~~~v~~~R~~~~~tG~ykG~~V~v~~~GmG~psaai~~~eL~~~g~~~iIriGtaGg 96 (276) T 1q1g_A 20 VVLVVGDPGRVDKIK-VV--CDSYVDLAYNREYKSVECHYKGQKFLCVSHGVGSAGCAVCFEELCQNGAKVIIRAGSCGS 96 (276) T ss_dssp EEEEESCHHHHHHHH-TT--SSEEEEEEEETTEEEEEEEETTEEEEEEECCSSHHHHHHHHHHHHTTTCCEEEEEEEEEE T ss_pred EEEECCCHHHHHHHH-HH--HCCCEEEECCCCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 799469979999999-98--188646520387699999998999999835645888999999998629988999354456 Q ss_pred H Q ss_conf 8 Q gi|254780498|r 120 L 120 (364) Q Consensus 120 ~ 120 (364) + T Consensus 97 l 97 (276) T 1q1g_A 97 L 97 (276) T ss_dssp S T ss_pred C T ss_conf 5 No 34 >2zkq_e 40S ribosomal protein S2E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Probab=22.80 E-value=32 Score=13.57 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=22.5 Q ss_pred EEEECCEEEEECCCCCH-HHHHHHHHHHHHHHHCCHHHHHHH Q ss_conf 74216148983889986-899999999999996070689999 Q gi|254780498|r 301 LLGVDGLVVKGHGSSDA-KSIFNVLGIAHNMSQNGFIDMVKD 341 (364) Q Consensus 301 llGl~g~vik~HG~s~~-~a~~~ai~~a~~~~~~~~~~~i~~ 341 (364) +.|+.-+..|++|++.. ..+..|...|-.-.++-......+ T Consensus 124 laGIkDv~~K~~Gst~~~~NvvkAt~~AL~~~~s~~tp~~~~ 165 (179) T 2zkq_e 124 MAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWK 165 (179) T ss_dssp HHTCCCEEEEECSSCCCHHHHHHHHHHHHHHCCC-------- T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHH T ss_conf 679456988713588978899999999999735467988974 No 35 >1gml_A CCT-gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Probab=22.63 E-value=33 Score=13.55 Aligned_cols=65 Identities=28% Similarity=0.261 Sum_probs=35.1 Q ss_pred CCCCCEEEEEECCCCCCCCCHHHH----HH---HHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHHHHH Q ss_conf 899965899840455555657999----99---99974024571320023455453245683899755127889999 Q gi|254780498|r 182 GINCPSIGLLNVGTEEIKGNDVLQ----ES---ARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKA 251 (364) Q Consensus 182 ~~~~PrVgLLNiG~E~~KG~~~~k----ea---~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~LKt 251 (364) .+++|||+|||.+-|..|.....+ .+ ....++. ... +... -..|..-.+|||+|.+=..+.++.. T Consensus 24 ~i~n~kI~ll~~~Le~~k~~~~~~i~i~~~~~l~~~~~~E-~~~--l~~~--v~~I~~~g~~vIi~~~~Id~~a~~~ 95 (178) T 1gml_A 24 YIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQME-EEY--IHQL--CEDIIQLKPDVVITEKGISDLAQHY 95 (178) T ss_dssp EEESCCEEEESSCBSCC--------------CHHHHHHHH-HHH--HHHH--HHHHHTTCCSEEEESSCBCHHHHHH T ss_pred CCCCCEEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHH-HHH--HHHH--HHHHHHCCCCEEEECCCCCHHHHHH T ss_conf 0678779999365454311254379978999999999999-999--9999--9999956997899858779799999 No 36 >1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Probab=22.12 E-value=21 Score=14.72 Aligned_cols=64 Identities=16% Similarity=0.097 Sum_probs=31.7 Q ss_pred CCCCCEEEEEECCCCCCCCCHHHH-------HHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHHHH Q ss_conf 899965899840455555657999-------999997402457132002345545324568389975512788999 Q gi|254780498|r 182 GINCPSIGLLNVGTEEIKGNDVLQ-------ESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIK 250 (364) Q Consensus 182 ~~~~PrVgLLNiG~E~~KG~~~~k-------ea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~LK 250 (364) .+++|||+||+..-|..|-....+ +-.++.++.. +|+-+ --..|..-.+|||+|-+=..+.++. T Consensus 18 ~i~n~kI~ll~~~Le~~k~~~~~~i~v~~~~~l~~~~~~E~----~~i~~-~v~~I~~~g~nvv~~~~~I~d~a~~ 88 (159) T 1ass_A 18 VVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQET----NTFKQ-MVEKIKKSGANVVLCQKGIDDVAQH 88 (159) T ss_dssp EEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHH----HHHHH-HHHHHHHTTCSEEEESSCBCHHHHH T ss_pred CCCCCEEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHH----HHHHH-HHHHHHHCCCEEEEECCCCCHHHHH T ss_conf 72586399992421445332532688589999999999999----99999-9999981597599966874589999 No 37 >1je0_A MTAP;, 5'-methylthioadenosine phosphorylase; alpha-beta protein, transferase; 1.60A {Sulfolobus solfataricus} SCOP: c.56.2.1 PDB: 1jdt_A* 1jdu_A 1jdv_A* 1jdz_A* 1jds_A 1je1_A* 1jp7_A 1jpv_A Probab=20.95 E-value=35 Score=13.33 Aligned_cols=73 Identities=19% Similarity=0.197 Sum_probs=34.1 Q ss_pred EEEEECCHHHHHHHHHHCCCCCCCEEEE-CCCCCC----CCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCHH Q ss_conf 7999789899999986269751557997-785201----77830679997137642799999998549953999706426 Q gi|254780498|r 44 RFLMYGDAKVCLPILDSHPLLKERSCFH-HCEVSI----AMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTG 118 (364) Q Consensus 44 ~iiLvGdee~I~~~l~~~~~~~~ri~Ii-~a~~vI----~mde~P~~AlR~kK~~SSm~~a~~lvk~g~aDa~VSaGnTG 118 (364) .++++||+++.+.+. ++ . +..+++ +.-++. .-+..|...+...-+..|...+++.+..-.++.++..|..| T Consensus 16 ~vi~~Gdp~Ra~~ia-~~--l-d~~~~~~~~r~~~~ytG~~~g~~i~v~~~GiG~~~aa~~~~el~~~g~~~iI~~GtaG 91 (236) T 1je0_A 16 RVLVVGDPGRARLLS-TL--L-QNPKLTNENRGFLVYTGKYNGETVSIATHGIGGPSIAIVLEELAMLGANVFIRYGTTG 91 (236) T ss_dssp EEEEESCHHHHHHHG-GG--S-EEEEEEECGGGCCEEEEEETTEEEEEEECCSSHHHHHHHHHHHHHTTCCEEEEEEEEE T ss_pred EEEECCCHHHHHHHH-HH--C-CCCEEEECCCCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 699579979999999-97--3-8877964148817999999988899996784889999999999974998899970455 Q ss_pred HH Q ss_conf 78 Q gi|254780498|r 119 AL 120 (364) Q Consensus 119 A~ 120 (364) ++ T Consensus 92 ~l 93 (236) T 1je0_A 92 AL 93 (236) T ss_dssp EC T ss_pred CC T ss_conf 67 No 38 >3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica} Probab=20.32 E-value=36 Score=13.25 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=17.8 Q ss_pred HHHHHCCCCEEEEEECCHHH-----HHHH----HHHHCCCCCCCC Q ss_conf 99985499539997064267-----8888----875322556763 Q gi|254780498|r 100 IEAVKKNQAASVVTAGNTGA-----LIAM----ARLCLSRISGVD 135 (364) Q Consensus 100 ~~lvk~g~aDa~VSaGnTGA-----~la~----a~~~lg~i~Gv~ 135 (364) +++.++|++ ++++.|...- .+.. .-.-+.-+|||+ T Consensus 90 ~~~~~~g~v-v~l~~GDP~i~~~~~~~~~~~~~~gi~~eviPGiS 133 (292) T 3i4t_A 90 LEPAKTKNV-ALLVVGDVYGATTHSDIFVRCQKMGIEVKVIHNAS 133 (292) T ss_dssp HHHHTTSEE-EEEESBCHHHHCTTHHHHHHHHHHTCCEEEECCCC T ss_pred HHHHCCCCE-EEEECCCCCCCCHHHHHHHHHHHCCCCEEECCCCC T ss_conf 999748998-99967999888859999999997699289838865 Done!