HHSEARCH alignment of GI: 254780498 and SCOP domain: d2af4c1

Alignment
>d2af4c1 c.77.1.5 (C:2-333) Phosphotransacetylase Pta {Methanosarcina thermophila [TaxId: 2210]}
Probab=99.95  E-value=4e-25  Score=175.48  Aligned_cols=278  Identities=15%  Similarity=0.171  Sum_probs=206.1

Q ss_pred             CCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHH---HH
Q ss_conf             982399997468777817779999999985799179997898999999862697515579977852017783067---99
Q gi|254780498|r   10 GNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPA---DA   86 (364)
Q Consensus        10 ~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~---~A   86 (364)
                      ++..||.+ +=|-   -+.+++++..+.++. -.+.+|+|++++|+..+++.++  +.++|+++.+.-.. +...   ..
T Consensus        13 ~~~krIvf-~Eg~---D~rvL~Aa~~~~~~g-i~~pILiG~~~~I~~~~~~l~l--~~~~iIdp~~~~~~-~~y~~~~~~   84 (332)
T d2af4c1          13 KLNKTIAL-PETE---DIRTLQAAAKILERG-IADIVLVGNEADIKALAGDLDL--SKAKIVDPKTYEKK-DEYINAFYE   84 (332)
T ss_dssp             HHCCEEEE-CCTT---SHHHHHHHHHHHHHT-SCEEEEESCHHHHHHHHSSCCC--TTSEEECTTSCTTH-HHHHHHHHH
T ss_pred             HCCCEEEE-CCCC---CHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCC--CCCEEECCCCCCHH-HHHHHHHHH
T ss_conf             48998998-6879---989999999999869-9069998799999999985899--86768787421026-789999999


Q ss_pred             HHHCCC----------CHHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHCCCCCCCCCCCHHHCC--CC----CCC
Q ss_conf             971376----------42799999998549953999706--4267888887532255676322001105--58----898
Q gi|254780498|r   87 LRRGRN----------VSSMWRAIEAVKKNQAASVVTAG--NTGALIAMARLCLSRISGVDRPSLAAFW--PT----VKG  148 (364)
Q Consensus        87 lR~kK~----------~SSm~~a~~lvk~g~aDa~VSaG--nTGA~la~a~~~lg~i~Gv~RPala~~~--Pt----~~g  148 (364)
                      +|++|+          ....+.|++||+.|++|++|+..  +|..++..++.++|+.+|..+.+...+|  |+    .++
T Consensus        85 ~r~~KG~~~~~A~~~~~~~~~~a~~mV~~G~aD~lv~G~~~~t~~~lr~~l~~ig~~~~~~~~s~~~i~~~p~~~~~~~~  164 (332)
T d2af4c1          85 LRKHKGITLENAAEIMSDYVYFAVMMAKLGEVDGVVSGAAHSSSDTLRPAVQIVKTAKGAALASAFFIISVPDCEYGSDG  164 (332)
T ss_dssp             HHGGGTCCHHHHHHHTTSHHHHHHHHHHTTSCSEEEECTTSCSHHHHHHHHHHTCBSTTCSCCEEEEEEECTTCCSTBTT
T ss_pred             HHHHCCCCHHHHHHHHCCHHHHHHHHHHCCCCHHEEECCCCCCHHHHHHHHHEEECCCCCCCCCEEEEEECCCCCCCCCC
T ss_conf             87445999999998740025999999976972003413445738876655520103222334652699970344567786


Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE---CCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCC
Q ss_conf             45998613277789899999999999999985689996589984---045555565799999999740245713200234
Q gi|254780498|r  149 KCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN---VGTEEIKGNDVLQESARLLRGECCGAFKYKGFI  225 (364)
Q Consensus       149 ~~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN---iG~E~~KG~~~~kea~~LL~~~~~~~~nF~Gni  225 (364)
                      ..++.||+.|++|++++|+++|...+..++.+ +++.|||+||+   .|+..+.-+..++++.+++++. .+++.+-|-.
T Consensus       165 ~l~~tD~avn~~P~~eqla~Ia~~aa~~~~~~-g~~~PkVAlLS~s~~gs~~~~~~~~~~~a~~~~~~~-~~~~~vdGem  242 (332)
T d2af4c1         165 TFLFADSGMVEMPSVEDVANIAVISAKTFELL-VQDVPKVAMLSYSTKGSAKSKLTEATIASTKLAQEL-APDIAIDGEL  242 (332)
T ss_dssp             EEEEETSSSCSSCCHHHHHHHHHHHHHHHHHH-HCSCCEEEEECSCSTTSCCSHHHHHHHHHHHHHHHH-CTTSEEEEEE
T ss_pred             EEEEECCCCEECCCHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH-CCCCEECCCH
T ss_conf             39984653310876899999999999999861-244550567751256798772046679999998604-8892241520


Q ss_pred             CHH--------------HCCCCCCCEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             554--------------53245683899755-127889999888899999999986322208899999989999999972
Q gi|254780498|r  226 EAN--------------DIAKGFVDVIVTEG-FSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEG  290 (364)
Q Consensus       226 Eg~--------------~i~~g~~DVvV~DG-FtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~  290 (364)
                      -.+              .-+.|.+||+|.-- =+|||.-|...                                    .
T Consensus       243 q~D~Al~~~~a~~k~~~s~v~G~AnvLIfPnl~agNi~yK~l~------------------------------------~  286 (332)
T d2af4c1         243 QVDAAIVPKVAASKAPGSPVAGKANVFIFPDLNCGNIAYKIAQ------------------------------------R  286 (332)
T ss_dssp             CHHHHHCHHHHHHHSTTCSSTTSCCEEECSSHHHHHHHHHHHH------------------------------------H
T ss_pred             HHHHCCCHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHH------------------------------------H
T ss_conf             2422138877874189997789899899488178689999999------------------------------------8


Q ss_pred             CCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             6968708746742161489838899868999999999999960
Q gi|254780498|r  291 FDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQN  333 (364)
Q Consensus       291 ~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~~~~~  333 (364)
                      +---..-|.+|+|++.||+....+++...+.|.+-.+.-..+.
T Consensus       287 ~~~a~~~Gpil~G~~~Pv~~~sR~~s~~~i~~~~alaa~~A~~  329 (332)
T d2af4c1         287 LAKAEAYGPITQGLAKPINDLSRGCSDEDIVGAVAITCVQAAA  329 (332)
T ss_dssp             TSCCEEEEEEEESBSSCEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCEEECCHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             4398487504326899878789999989999999999999874


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Phosphotransacetylase
domain: Phosphotransacetylase Pta
species: Methanosarcina thermophila [TaxId: 2210]