RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780498|ref|YP_003064911.1| putative glycerol-3-phosphate acyltransferase PlsX [Candidatus Liberibacter asiaticus str. psy62] (364 letters) >gnl|CDD|30765 COG0416, PlsX, Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]. Length = 338 Score = 355 bits (913), Expect = 1e-98 Identities = 137/338 (40%), Positives = 218/338 (64%), Gaps = 5/338 (1%) Query: 14 TISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHP-LLKERSCFHH 72 I++D MGGD G ++ GA + LE HP + ++ GD P+L P LL+ER H Sbjct: 3 KIAIDAMGGDHGPEVVVPGALQALEEHPDLEIILVGDEDKIEPLLAKAPKLLRERIEIVH 62 Query: 73 CEVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRIS 132 E I MD++P+ ALR+ + SSM A++ VK+ +A + V+AGNTGAL+A+A L L RI Sbjct: 63 AEEVIEMDDKPSQALRKKKG-SSMRVALDLVKEGKADACVSAGNTGALMALALLKLGRIK 121 Query: 133 GVDRPSLAAFWPTV-KGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLL 191 G+DRP+LA PT+ GK ++LDVGA + H+VQ +++GS +A V GI P +GLL Sbjct: 122 GIDRPALATLLPTIDGGKTVVLDVGANVDCKPEHLVQFALMGSAYAEKVLGIKNPRVGLL 181 Query: 192 NVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKA 251 N+GTEEIKGN++++E+ LL+ + G +E DI G VDV+VT+GF+GN+ +K Sbjct: 182 NIGTEEIKGNELVKEAYELLKET--PLINFIGNVEGRDILDGTVDVVVTDGFTGNVVLKT 239 Query: 252 AEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKG 311 AEG + I +L++ + +L S++G LL+K +L+ +K+ DP + G VLLG++G+V+K Sbjct: 240 AEGTAKFILSLLKEEIKSSLKSKLGALLLKPALKRLKKKLDPSEYGGAVLLGLNGIVIKS 299 Query: 312 HGSSDAKSIFNVLGIAHNMSQNGFIDMVKDDMQRVRDS 349 HGS+DA++ + + A+ M ++ ++ ++++ Sbjct: 300 HGSADARAFASAIRQAYEMVKSQVPQRIEARLEKLLAL 337 >gnl|CDD|111407 pfam02504, FA_synthesis, Fatty acid synthesis protein. The plsX gene is part of the bacterial fab gene cluster which encodes several key fatty acid biosynthetic enzymes. The exact function of the plsX protein in fatty acid synthesis is unknown. Length = 322 Score = 281 bits (720), Expect = 3e-76 Identities = 128/326 (39%), Positives = 202/326 (61%), Gaps = 6/326 (1%) Query: 14 TISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHC 73 I++D MGGD G +++ G ++ + ++ GD P++ L + + H Sbjct: 2 RIAIDAMGGDHGPLEVVKGVLLAAKSAQDLDIVLVGDKDAIDPLVKEAELNSKLTIVHAE 61 Query: 74 EVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISG 133 V I M++ P A+R+ + SSM AI+ VK+ +A + V+AGNTGAL+A+A L L RI G Sbjct: 62 GV-IEMEDTPLAAIRKKK--SSMAVAIDLVKEGEADAAVSAGNTGALMALAMLRLGRIKG 118 Query: 134 VDRPSLAAFWPTVKGKC-IILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN 192 + RP+L PTV GK ++LDVGA + +VQ +++GS +A+S+ GI+ P +GLLN Sbjct: 119 ITRPALGTELPTVNGKFTVLLDVGANVDCKPKELVQFALMGSVYAQSLLGIDSPRVGLLN 178 Query: 193 VGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKAA 252 +G EE+KGND+ +++ +LL+ + + G +E DI G VDVIV +GF+GN+ +K A Sbjct: 179 IGEEEVKGNDLHKQTFKLLKAT--PGYNFLGNVEGRDILDGVVDVIVCDGFTGNVILKTA 236 Query: 253 EGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGH 312 EG + I +L+ L R+ LS++G LL+ K+L+ +K+ FD + + G VLLG+ GLV+K H Sbjct: 237 EGVAKFIGSILKDELKRSKLSKLGALLLSKALKRLKKKFDYKEYGGAVLLGLSGLVIKSH 296 Query: 313 GSSDAKSIFNVLGIAHNMSQNGFIDM 338 GS+D +IF + A + Q G I Sbjct: 297 GSADKTAIFAAIRQAIELVQTGVIVR 322 >gnl|CDD|133079 cd03868, M14_CPD_I, The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at pH 6.3-7.5 and prefers substrates with C-terminal Arg, whereas domain II is active at pH 5.0-6.5 and prefers substrates with C-terminal Lys. CPD functions in the processing of proteins that transit the secretory pathway, and is present in all vertebrates as well as Drosophila. It is broadly distributed in all tissue types. Within cells, CPD is present in the trans Golgi network and immature secretory vesicles, but is excluded from mature vesicles. It is thought to play a role in the processing of proteins that are initially processed by furin or related endopeptidases present in the trans Golgi network, such as growth factors and receptors. CPD is implicated in the pathogenesis of lupus erythematosus (LE), it is regulated by TGF-beta in various cell types of murine and human origin and is significantly down-regulated in CD14 positive cells isolated from patients with LE. As down -regulation of CPD leads to down-modulation of TGF-beta, CPD may have a role in a positive feedback loop. Length = 372 Score = 28.8 bits (65), Expect = 2.2 Identities = 12/36 (33%), Positives = 17/36 (47%) Query: 300 VLLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQNGF 335 V +GV G V G+ + V GI HN++ F Sbjct: 294 VHIGVKGFVRDASGNPIEDATIMVAGIDHNVTTAKF 329 >gnl|CDD|33287 COG3484, COG3484, Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]. Length = 255 Score = 28.0 bits (62), Expect = 4.4 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%) Query: 7 LQGGNVDTISLDLMGGDLGARD----LILGASKFLEAHPRIRFLMYGDAKVCLPILD 59 L+ +D L+GG + LI F++A P FL G+ K PILD Sbjct: 103 LEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGETKYGKPILD 159 >gnl|CDD|39061 KOG3857, KOG3857, KOG3857, Alcohol dehydrogenase, class IV [Energy production and conversion]. Length = 465 Score = 26.9 bits (59), Expect = 8.7 Identities = 11/36 (30%), Positives = 15/36 (41%) Query: 85 DALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGAL 120 D ++ V S+ A+E KK S V G A Sbjct: 105 DKVQPEPTVGSVTAALEFAKKKNFDSFVAIGGGSAH 140 >gnl|CDD|33821 COG4063, MtrA, Tetrahydromethanopterin S-methyltransferase, subunit A [Coenzyme metabolism]. Length = 238 Score = 26.8 bits (59), Expect = 9.1 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 22/163 (13%) Query: 134 VDRPSLAAFWPTVKGKCIILDVGATIGSTV--SHMVQLSILGSFFARSVAGINCPSIGLL 191 V++ A WP V+G ++ D + + SH+ + + A I P Sbjct: 2 VEKKEPAEGWPIVRGDYVVGDPESPVAVVTLASHIEDPPL------EAGAAIAGPC-KTE 54 Query: 192 NVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKA 251 N+G E++ N + + R L CGA + +G I + + G I Sbjct: 55 NLGIEKVIANVISNPNIRFLV--VCGA-EVQGHITGQSM-----KALHANGVDDKGRIIG 106 Query: 252 AEGAVRHISGVLQKSLNR-----TLLSRIGCLLIKKSLREVKE 289 A GA+ +I + +++ R L+ I + +V+E Sbjct: 107 ATGAIPYIENIPDEAVERFQQQVELVDLIDVEDPDEITAKVEE 149 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.322 0.138 0.402 Gapped Lambda K H 0.267 0.0709 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,184,802 Number of extensions: 222027 Number of successful extensions: 465 Number of sequences better than 10.0: 1 Number of HSP's gapped: 457 Number of HSP's successfully gapped: 13 Length of query: 364 Length of database: 6,263,737 Length adjustment: 95 Effective length of query: 269 Effective length of database: 4,210,882 Effective search space: 1132727258 Effective search space used: 1132727258 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.2 bits)