RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780498|ref|YP_003064911.1| putative glycerol-3-phosphate
acyltransferase PlsX [Candidatus Liberibacter asiaticus str. psy62]
(364 letters)
>gnl|CDD|30765 COG0416, PlsX, Fatty acid/phospholipid biosynthesis enzyme [Lipid
metabolism].
Length = 338
Score = 355 bits (913), Expect = 1e-98
Identities = 137/338 (40%), Positives = 218/338 (64%), Gaps = 5/338 (1%)
Query: 14 TISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHP-LLKERSCFHH 72
I++D MGGD G ++ GA + LE HP + ++ GD P+L P LL+ER H
Sbjct: 3 KIAIDAMGGDHGPEVVVPGALQALEEHPDLEIILVGDEDKIEPLLAKAPKLLRERIEIVH 62
Query: 73 CEVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRIS 132
E I MD++P+ ALR+ + SSM A++ VK+ +A + V+AGNTGAL+A+A L L RI
Sbjct: 63 AEEVIEMDDKPSQALRKKKG-SSMRVALDLVKEGKADACVSAGNTGALMALALLKLGRIK 121
Query: 133 GVDRPSLAAFWPTV-KGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLL 191
G+DRP+LA PT+ GK ++LDVGA + H+VQ +++GS +A V GI P +GLL
Sbjct: 122 GIDRPALATLLPTIDGGKTVVLDVGANVDCKPEHLVQFALMGSAYAEKVLGIKNPRVGLL 181
Query: 192 NVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKA 251
N+GTEEIKGN++++E+ LL+ + G +E DI G VDV+VT+GF+GN+ +K
Sbjct: 182 NIGTEEIKGNELVKEAYELLKET--PLINFIGNVEGRDILDGTVDVVVTDGFTGNVVLKT 239
Query: 252 AEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKG 311
AEG + I +L++ + +L S++G LL+K +L+ +K+ DP + G VLLG++G+V+K
Sbjct: 240 AEGTAKFILSLLKEEIKSSLKSKLGALLLKPALKRLKKKLDPSEYGGAVLLGLNGIVIKS 299
Query: 312 HGSSDAKSIFNVLGIAHNMSQNGFIDMVKDDMQRVRDS 349
HGS+DA++ + + A+ M ++ ++ ++++
Sbjct: 300 HGSADARAFASAIRQAYEMVKSQVPQRIEARLEKLLAL 337
>gnl|CDD|111407 pfam02504, FA_synthesis, Fatty acid synthesis protein. The plsX
gene is part of the bacterial fab gene cluster which
encodes several key fatty acid biosynthetic enzymes. The
exact function of the plsX protein in fatty acid
synthesis is unknown.
Length = 322
Score = 281 bits (720), Expect = 3e-76
Identities = 128/326 (39%), Positives = 202/326 (61%), Gaps = 6/326 (1%)
Query: 14 TISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHC 73
I++D MGGD G +++ G ++ + ++ GD P++ L + + H
Sbjct: 2 RIAIDAMGGDHGPLEVVKGVLLAAKSAQDLDIVLVGDKDAIDPLVKEAELNSKLTIVHAE 61
Query: 74 EVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISG 133
V I M++ P A+R+ + SSM AI+ VK+ +A + V+AGNTGAL+A+A L L RI G
Sbjct: 62 GV-IEMEDTPLAAIRKKK--SSMAVAIDLVKEGEADAAVSAGNTGALMALAMLRLGRIKG 118
Query: 134 VDRPSLAAFWPTVKGKC-IILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN 192
+ RP+L PTV GK ++LDVGA + +VQ +++GS +A+S+ GI+ P +GLLN
Sbjct: 119 ITRPALGTELPTVNGKFTVLLDVGANVDCKPKELVQFALMGSVYAQSLLGIDSPRVGLLN 178
Query: 193 VGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKAA 252
+G EE+KGND+ +++ +LL+ + + G +E DI G VDVIV +GF+GN+ +K A
Sbjct: 179 IGEEEVKGNDLHKQTFKLLKAT--PGYNFLGNVEGRDILDGVVDVIVCDGFTGNVILKTA 236
Query: 253 EGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGH 312
EG + I +L+ L R+ LS++G LL+ K+L+ +K+ FD + + G VLLG+ GLV+K H
Sbjct: 237 EGVAKFIGSILKDELKRSKLSKLGALLLSKALKRLKKKFDYKEYGGAVLLGLSGLVIKSH 296
Query: 313 GSSDAKSIFNVLGIAHNMSQNGFIDM 338
GS+D +IF + A + Q G I
Sbjct: 297 GSADKTAIFAAIRQAIELVQTGVIVR 322
>gnl|CDD|133079 cd03868, M14_CPD_I, The first carboxypeptidase (CP)-like domain of
Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD
differs from all other metallocarboxypeptidases in that
it contains multiple CP-like domains. CPD belongs to the
N/E-like subfamily of the M14 family of
metallocarboxypeptidases (MCPs).The M14 family are
zinc-binding CPs which hydrolyze single, C-terminal
amino acids from polypeptide chains, and have a
recognition site for the free C-terminal carboxyl group,
which is a key determinant of specificity. CPD is a
single-chain protein containing a signal peptide, three
tandem repeats of CP-like domains separated by short
bridge regions, followed by a transmembrane domain, and
a C-terminal cytosolic tail. The first two CP-like
domains of CPD contain all of the essential active site
and substrate-binding residues, the third CP-like domain
lacks critical residues necessary for enzymatic activity
and is inactive towards standard CP substrates. Domain I
is optimally active at pH 6.3-7.5 and prefers substrates
with C-terminal Arg, whereas domain II is active at pH
5.0-6.5 and prefers substrates with C-terminal Lys. CPD
functions in the processing of proteins that transit the
secretory pathway, and is present in all vertebrates as
well as Drosophila. It is broadly distributed in all
tissue types. Within cells, CPD is present in the trans
Golgi network and immature secretory vesicles, but is
excluded from mature vesicles. It is thought to play a
role in the processing of proteins that are initially
processed by furin or related endopeptidases present in
the trans Golgi network, such as growth factors and
receptors. CPD is implicated in the pathogenesis of
lupus erythematosus (LE), it is regulated by TGF-beta in
various cell types of murine and human origin and is
significantly down-regulated in CD14 positive cells
isolated from patients with LE. As down -regulation of
CPD leads to down-modulation of TGF-beta, CPD may have a
role in a positive feedback loop.
Length = 372
Score = 28.8 bits (65), Expect = 2.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 300 VLLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQNGF 335
V +GV G V G+ + V GI HN++ F
Sbjct: 294 VHIGVKGFVRDASGNPIEDATIMVAGIDHNVTTAKF 329
>gnl|CDD|33287 COG3484, COG3484, Predicted proteasome-type protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 255
Score = 28.0 bits (62), Expect = 4.4
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 7 LQGGNVDTISLDLMGGDLGARD----LILGASKFLEAHPRIRFLMYGDAKVCLPILD 59
L+ +D L+GG + LI F++A P FL G+ K PILD
Sbjct: 103 LEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGETKYGKPILD 159
>gnl|CDD|39061 KOG3857, KOG3857, KOG3857, Alcohol dehydrogenase, class IV [Energy
production and conversion].
Length = 465
Score = 26.9 bits (59), Expect = 8.7
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 85 DALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGAL 120
D ++ V S+ A+E KK S V G A
Sbjct: 105 DKVQPEPTVGSVTAALEFAKKKNFDSFVAIGGGSAH 140
>gnl|CDD|33821 COG4063, MtrA, Tetrahydromethanopterin S-methyltransferase, subunit
A [Coenzyme metabolism].
Length = 238
Score = 26.8 bits (59), Expect = 9.1
Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 22/163 (13%)
Query: 134 VDRPSLAAFWPTVKGKCIILDVGATIGSTV--SHMVQLSILGSFFARSVAGINCPSIGLL 191
V++ A WP V+G ++ D + + SH+ + + A I P
Sbjct: 2 VEKKEPAEGWPIVRGDYVVGDPESPVAVVTLASHIEDPPL------EAGAAIAGPC-KTE 54
Query: 192 NVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKA 251
N+G E++ N + + R L CGA + +G I + + G I
Sbjct: 55 NLGIEKVIANVISNPNIRFLV--VCGA-EVQGHITGQSM-----KALHANGVDDKGRIIG 106
Query: 252 AEGAVRHISGVLQKSLNR-----TLLSRIGCLLIKKSLREVKE 289
A GA+ +I + +++ R L+ I + +V+E
Sbjct: 107 ATGAIPYIENIPDEAVERFQQQVELVDLIDVEDPDEITAKVEE 149
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.138 0.402
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,184,802
Number of extensions: 222027
Number of successful extensions: 465
Number of sequences better than 10.0: 1
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 13
Length of query: 364
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 269
Effective length of database: 4,210,882
Effective search space: 1132727258
Effective search space used: 1132727258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)