RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780498|ref|YP_003064911.1| putative glycerol-3-phosphate
acyltransferase PlsX [Candidatus Liberibacter asiaticus str. psy62]
(364 letters)
>gnl|CDD|180021 PRK05331, PRK05331, putative phosphate acyltransferase;
Provisional.
Length = 334
Score = 411 bits (1058), Expect = e-115
Identities = 141/334 (42%), Positives = 217/334 (64%), Gaps = 3/334 (0%)
Query: 14 TISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHC 73
I++D MGGD G ++ GA + L+ HP + ++ GD + P+L P LKER H
Sbjct: 3 KIAIDAMGGDFGPEVVVPGALQALKEHPDLEIILVGDEEKIKPLLAKKPDLKERIEIVHA 62
Query: 74 EVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISG 133
I MD++P+ ALRR ++ SSM A+E VK+ +A + V+AGNTGAL+A A L R+ G
Sbjct: 63 SEVIGMDDKPSQALRRKKD-SSMRVALELVKEGEADACVSAGNTGALMAAALFVLGRLPG 121
Query: 134 VDRPSLAAFWPTVKGK-CIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN 192
+DRP+LAA PTVKG ++LD+GA + H+VQ +++GS +A +V GI P +GLLN
Sbjct: 122 IDRPALAAILPTVKGGGTVLLDLGANVDCKPEHLVQFAVMGSVYAEAVLGIENPRVGLLN 181
Query: 193 VGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKAA 252
+G EEIKGN++++E+ LL+ + + G +E DI KG DV+V +GF GN+A+K +
Sbjct: 182 IGEEEIKGNELVKEAYELLK-AADSSINFIGNVEGRDILKGTADVVVCDGFVGNVALKTS 240
Query: 253 EGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGH 312
EG + I +L++ L +LLS++G LL+K +L+ +K+ DPR + G VLLG++G+V+K H
Sbjct: 241 EGTAKMILSLLKEELKSSLLSKLGALLLKPALKRLKKKLDPREYGGAVLLGLNGIVIKSH 300
Query: 313 GSSDAKSIFNVLGIAHNMSQNGFIDMVKDDMQRV 346
GSSDAK+ N + A +N + + + ++ V
Sbjct: 301 GSSDAKAFANAIRQAKEAVENNVPERIAERLEEV 334
>gnl|CDD|129286 TIGR00182, plsX, fatty acid/phospholipid synthesis protein PlsX.
This protein of fatty acid/phospholipid biosynthesis,
called PlsX after the member in Streptococcus
pneumoniae, is proposed to be a phosphate
acyltransferase that partners with PlsY (TIGR00023) in a
two-step 1-acylglycerol-3-phosphate biosynthesis pathway
alternative to the one-step PlsB (EC 2.3.1.15) pathway.
Length = 322
Score = 246 bits (631), Expect = 5e-66
Identities = 118/321 (36%), Positives = 192/321 (59%), Gaps = 7/321 (2%)
Query: 21 GGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMD 80
GGD ++I G K+ A+ + ++ GD P LD P + H + I M
Sbjct: 1 GGDHAPSEVIDGVLKYASANQDLHIILVGDKDAIEPHLDKLP---KNITIIHAQSVIEMT 57
Query: 81 ERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLA 140
+ P A+RR N SSM A+ VK+ +A +V++AGN+GAL+ +A L L RI G+DRP+L
Sbjct: 58 DTPVRAIRRKVN-SSMQLAMNLVKEGRADAVISAGNSGALMGLALLRLGRIKGIDRPALM 116
Query: 141 AFWPTV-KGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLNVGTEEIK 199
PTV ++LDVGA + ++VQ +++GS +++ V G++ P +GLLN+GTE+ K
Sbjct: 117 TLLPTVNGDWFVLLDVGANVDCKPKYLVQFALMGSVYSKKVLGVDSPRVGLLNIGTEDNK 176
Query: 200 GNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKAAEGAVRHI 259
GND+ +E+ +LL+ + + G +EA D+ G DV+V +GF+GN+ +K EG + I
Sbjct: 177 GNDLHKETFQLLKED--PNINFIGNVEARDLLDGVCDVLVCDGFTGNVVLKTMEGVAKTI 234
Query: 260 SGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKS 319
+L+ TL S++ L +K L+ +K+ FD N+ G VL G++ LV+K HGSSD+++
Sbjct: 235 LSILKDEYKSTLRSKLAALFLKPILKSLKQKFDYANYGGAVLFGLNKLVIKSHGSSDSRA 294
Query: 320 IFNVLGIAHNMSQNGFIDMVK 340
F+ + AH ++ I+ +K
Sbjct: 295 FFSAIRQAHEAVKSQVINRIK 315
>gnl|CDD|172371 PRK13845, PRK13845, putative glycerol-3-phosphate acyltransferase
PlsX; Provisional.
Length = 437
Score = 174 bits (443), Expect = 3e-44
Identities = 114/332 (34%), Positives = 189/332 (56%), Gaps = 13/332 (3%)
Query: 15 ISLDLMGGDLGARDLILGASKFLEAHP-RIRFLMYGDAKVCLPI-LDSHPLLKERSCFHH 72
+++D MGGD ++ G + + P I+F+ + L LL++ H
Sbjct: 97 VAVDGMGGDYAPGPILEGCLQAISRLPLNIKFVGEIEKVKEAAEALGLEELLEKAIDAGH 156
Query: 73 CEV-----SIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLC 127
E+ SI MDE A A+R+ ++ +S+ A++ VKK +A +V +AGN+GA++A A
Sbjct: 157 LELIASGPSIGMDEE-ATAVRKKKD-ASINVAMDLVKKGKALAVYSAGNSGAMMASAIFR 214
Query: 128 LSRISGVDRPSLAAFWPTV-KGK-CIILDVGATIGSTVSHMVQLSILGSFFARSVAGINC 185
L R+ G+DRP++ A +PT G+ ++LDVGA + S++ Q ++LG+ ++R V +
Sbjct: 215 LGRLKGIDRPAIGALFPTKDPGQPVLVLDVGANMDCKPSYLHQFALLGNIYSRDVLQVKK 274
Query: 186 PSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSG 245
P IGLLN+G EE KGND+ ++ LL E F + G E D+ G DV+V +GF+G
Sbjct: 275 PRIGLLNIGEEECKGNDLSLKTFELLSEE--KRFHFAGNCEGRDVLSGDFDVVVCDGFTG 332
Query: 246 NIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVD 305
N+ +K E + VL+ L R ++G ++ +L+ +K+ D G +LLGV+
Sbjct: 333 NVLLKFLESVGSVLLDVLRAELPRGRRGKVGSAFLRSNLKRIKKRLDHAEHGGALLLGVN 392
Query: 306 GLVVKGHGSSDAKSIFNVLGIAHNMSQNGFID 337
G+ V GHGSS A S+ + L +AH+ + +G +D
Sbjct: 393 GICVIGHGSSKALSVVSALRLAHSAASHGVMD 424
>gnl|CDD|139906 PRK13846, PRK13846, putative glycerol-3-phosphate acyltransferase
PlsX; Provisional.
Length = 316
Score = 152 bits (385), Expect = 1e-37
Identities = 98/340 (28%), Positives = 170/340 (50%), Gaps = 33/340 (9%)
Query: 15 ISLDLMGGD---LGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFH 71
I +DLMGGD L +++ + + F ++ ++V IL + PL
Sbjct: 5 IGIDLMGGDHSPLVVWEVLGDVLLSSSSEQPVEFTVFASSEVHHQILSNSPL-SRSPRII 63
Query: 72 HCEVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRI 131
E ++M++ P A+R+ SSM ++ +++++ + ++ GNT AL+ +AR +
Sbjct: 64 TAEDFVSMEDSPLAAIRKKS--SSMALGLDYLQEDKLDAFISTGNTAALVTLARAKIPMF 121
Query: 132 SGVDRPSLAAFWPTVKGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLL 191
V RP+L PT++G +ILDVGA + MV + +G + + + P++GLL
Sbjct: 122 PAVPRPALLVSVPTMRGFAVILDVGANVSVNPEEMVGFARMGLAYRQCLGSNQPPTLGLL 181
Query: 192 NVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKA 251
N+G+EE KG + +++ R+LR AF G IE+ D+ G VD++VT+GF+GNI +K
Sbjct: 182 NIGSEERKGTEAHRQTFRMLRETFGSAF--LGNIESGDVFSGKVDIVVTDGFTGNIFLKT 239
Query: 252 AEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKG 311
AEG + +L L + +K D + G ++ G+ LV+K
Sbjct: 240 AEGVFDFLRHILGDKLEKD----------------IKRQLDYTIYPGSIVCGLSKLVIKC 283
Query: 312 HGSSDAKSIFNVLGIAHNMSQNGFIDMVKDDM-QRVRDSL 350
HG + S+F GI+ G ID+ + + R+ L
Sbjct: 284 HGKACGTSLFG--GIS------GSIDLARARVCSRILSRL 315
>gnl|CDD|185101 PRK15179, PRK15179, Vi polysaccharide biosynthesis protein TviE;
Provisional.
Length = 694
Score = 28.8 bits (64), Expect = 2.2
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 33 ASKFLEAHPRIRFLMYGDAKVCLPILDS 60
A +F +HP++RF+M G P+L+S
Sbjct: 539 AQRFAASHPKVRFIMVGGG----PLLES 562
>gnl|CDD|181128 PRK07810, PRK07810, O-succinylhomoserine sulfhydrylase;
Provisional.
Length = 403
Score = 28.9 bits (65), Expect = 2.4
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 7/29 (24%)
Query: 34 SKFLEAHPRIRFLMYGDAKVCLPILDSHP 62
++FLE HP +R++ Y P L SHP
Sbjct: 281 AEFLEGHPAVRWVRY-------PFLPSHP 302
>gnl|CDD|181680 PRK09182, PRK09182, DNA polymerase III subunit epsilon; Validated.
Length = 294
Score = 28.4 bits (64), Expect = 2.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 119 ALIAMARLCLSRISGVDRPSLAAFWPTVKGK 149
ALIA A L ++ +G DRP L F P K
Sbjct: 116 ALIAPADLIIAHNAGFDRPFLERFSPVFATK 146
>gnl|CDD|185010 PRK15050, PRK15050, 2-aminoethylphosphonate transport system
permease PhnU; Provisional.
Length = 296
Score = 28.0 bits (63), Expect = 3.4
Identities = 9/55 (16%), Positives = 19/55 (34%)
Query: 123 MARLCLSRISGVDRPSLAAFWPTVKGKCIILDVGATIGSTVSHMVQLSILGSFFA 177
+ R+ L ++G LA + + + T+ + +LG A
Sbjct: 43 LVRVVLQSLTGEHGLGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGVLLA 97
>gnl|CDD|181101 PRK07742, PRK07742, phosphate butyryltransferase; Validated.
Length = 299
Score = 28.1 bits (63), Expect = 4.0
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 16/73 (21%)
Query: 44 RFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRRGRNVSSMWRAIEAV 103
RF +YG+ + +L+E + I + A+A A++AV
Sbjct: 42 RFRLYGNQEKI------MGMLQEHGLQTSEHIEIIHAQSSAEAAE---------LAVKAV 86
Query: 104 KKNQAASVVTAGN 116
+ + A V+ GN
Sbjct: 87 RNGE-ADVLMKGN 98
>gnl|CDD|168292 PRK05906, PRK05906, lipid A biosynthesis lauroyl acyltransferase;
Provisional.
Length = 454
Score = 27.8 bits (62), Expect = 4.4
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 15/68 (22%)
Query: 218 AFKYKGFIEANDIAK--------GFVDVIVTEGFSGN----IAIKAAEGAVRHISG--VL 263
AF K F E IA+ F++++ E +G+ IAI +E A V
Sbjct: 65 AFPEKSFAERYQIARQSVQHVIITFLELLAVEKLAGHIDELIAIATSEDAPEGFFPEEVS 124
Query: 264 -QKSLNRT 270
Q+ L T
Sbjct: 125 SQQELEHT 132
>gnl|CDD|180316 PRK05939, PRK05939, hypothetical protein; Provisional.
Length = 397
Score = 27.7 bits (62), Expect = 5.1
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 7/32 (21%)
Query: 31 LGASKFLEAHPRIRFLMYGDAKVCLPILDSHP 62
L ++FLEAHP++ A+V P L SHP
Sbjct: 275 LALAQFLEAHPKV-------ARVYYPGLASHP 299
>gnl|CDD|152500 pfam12065, DUF3545, Protein of unknown function (DUF3545). This
family of proteins is functionally uncharacterized. This
protein is found in bacteria. Proteins in this family
are typically between 60 to 77 amino acids in length.
This protein has two completely conserved residues (R
and L) that may be functionally important.
Length = 59
Score = 26.9 bits (60), Expect = 7.5
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 81 ERPADALRRGRNVSSMWRAIEAVK 104
ERP + + + WR IEA+K
Sbjct: 13 ERPRRS--KSKPKKRKWREIEAIK 34
>gnl|CDD|183789 PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed.
Length = 285
Score = 26.8 bits (60), Expect = 8.0
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 120 LIAMARLCLSRISGVDRP--SLAAFWPTVKGKCIILDVGATIGSTVSHMVQLSILGSFFA 177
I M L ++ + +P L F+PT+ G +L ++ +S +V L I+GS
Sbjct: 2 DILMKFLAYFKLMRLHKPIGILLVFFPTLFG---LLLASHSLLPDISLLV-LFIIGSVLM 57
Query: 178 RSVAG--INC 185
RS AG IN
Sbjct: 58 RS-AGCIIND 66
>gnl|CDD|106964 PHA00652, PHA00652, hypothetical protein.
Length = 128
Score = 27.0 bits (59), Expect = 8.9
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 100 IEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKCIILDVGATI 159
I A K NQ + + A A +AM R L ++G+ +P + +I +VG +
Sbjct: 57 IVAGKSNQVSKLYAAD---AGLAMLRFWLRFLAGIQKPHAMTPHQVETAQVLIAEVGRIL 113
Query: 160 GSTVSHM 166
GS ++ +
Sbjct: 114 GSWIARV 120
>gnl|CDD|132512 TIGR03472, HpnI, hopanoid biosynthesis associated glycosyl
transferase protein HpnI. This family of genes include
a glycosyl transferase, group 2 domain (pfam00535) which
are responsible, generally for the transfer of
nucleotide-diphosphate sugars to substrates such as
polysaccharides and lipids. The member of this clade
from Acidithiobacillus ferrooxidans ATCC 23270
(AFE_0974) is found in the same locus as squalene-hopene
cyclase (SHC, TIGR01507) and other genes associated with
the biosynthesis of hopanoid natural products.
Similarly, in Ralstonia eutropha JMP134 (Reut_B4902)
this gene is adjacent to HpnAB, IspH and HpnH
(TIGR03470), although SHC itself is elsewhere in the
genome. Notably, this gene (here named HpnI) and three
others form a conserved set (HpnIJKL) which occur in a
subset of all genomes containing the SHC enzyme. This
relationship was discerned using the method of partial
phylogenetic profiling. This group includes Zymomonas
mobilis, the organism where the initial hopanoid
biosynthesis locus was described consisting of the genes
HpnA-E and SHC (HpnF). Continuing past SHC are found a
phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and
another radical SAM enzyme (ZMO0874), HpnH. Although
discontinuous in Z. mobilis, we continue the gene symbol
sequence with HpnIJKL. Hopanoids are known to feature
polar glycosyl head groups in many organisms.
Length = 373
Score = 27.0 bits (60), Expect = 9.1
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 87 LRRGRNVSSMWRAIEA--VKKNQAASVVTA-------GNTGALIAMARLCLSRISGVDRP 137
L RGR V W + A + N SV+ A GA +A+ R L I G+
Sbjct: 162 LYRGRPVPGFWSRLGAMGINHNFLPSVMVARALGRARFCFGATMALRRATLEAIGGL--A 219
Query: 138 SLA 140
+LA
Sbjct: 220 ALA 222
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.138 0.402
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,852,705
Number of extensions: 383847
Number of successful extensions: 700
Number of sequences better than 10.0: 1
Number of HSP's gapped: 688
Number of HSP's successfully gapped: 19
Length of query: 364
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 269
Effective length of database: 3,941,713
Effective search space: 1060320797
Effective search space used: 1060320797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)