RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780498|ref|YP_003064911.1| putative glycerol-3-phosphate acyltransferase PlsX [Candidatus Liberibacter asiaticus str. psy62] (364 letters) >gnl|CDD|180021 PRK05331, PRK05331, putative phosphate acyltransferase; Provisional. Length = 334 Score = 411 bits (1058), Expect = e-115 Identities = 141/334 (42%), Positives = 217/334 (64%), Gaps = 3/334 (0%) Query: 14 TISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHC 73 I++D MGGD G ++ GA + L+ HP + ++ GD + P+L P LKER H Sbjct: 3 KIAIDAMGGDFGPEVVVPGALQALKEHPDLEIILVGDEEKIKPLLAKKPDLKERIEIVHA 62 Query: 74 EVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISG 133 I MD++P+ ALRR ++ SSM A+E VK+ +A + V+AGNTGAL+A A L R+ G Sbjct: 63 SEVIGMDDKPSQALRRKKD-SSMRVALELVKEGEADACVSAGNTGALMAAALFVLGRLPG 121 Query: 134 VDRPSLAAFWPTVKGK-CIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN 192 +DRP+LAA PTVKG ++LD+GA + H+VQ +++GS +A +V GI P +GLLN Sbjct: 122 IDRPALAAILPTVKGGGTVLLDLGANVDCKPEHLVQFAVMGSVYAEAVLGIENPRVGLLN 181 Query: 193 VGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKAA 252 +G EEIKGN++++E+ LL+ + + G +E DI KG DV+V +GF GN+A+K + Sbjct: 182 IGEEEIKGNELVKEAYELLK-AADSSINFIGNVEGRDILKGTADVVVCDGFVGNVALKTS 240 Query: 253 EGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGH 312 EG + I +L++ L +LLS++G LL+K +L+ +K+ DPR + G VLLG++G+V+K H Sbjct: 241 EGTAKMILSLLKEELKSSLLSKLGALLLKPALKRLKKKLDPREYGGAVLLGLNGIVIKSH 300 Query: 313 GSSDAKSIFNVLGIAHNMSQNGFIDMVKDDMQRV 346 GSSDAK+ N + A +N + + + ++ V Sbjct: 301 GSSDAKAFANAIRQAKEAVENNVPERIAERLEEV 334 >gnl|CDD|129286 TIGR00182, plsX, fatty acid/phospholipid synthesis protein PlsX. This protein of fatty acid/phospholipid biosynthesis, called PlsX after the member in Streptococcus pneumoniae, is proposed to be a phosphate acyltransferase that partners with PlsY (TIGR00023) in a two-step 1-acylglycerol-3-phosphate biosynthesis pathway alternative to the one-step PlsB (EC 2.3.1.15) pathway. Length = 322 Score = 246 bits (631), Expect = 5e-66 Identities = 118/321 (36%), Positives = 192/321 (59%), Gaps = 7/321 (2%) Query: 21 GGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMD 80 GGD ++I G K+ A+ + ++ GD P LD P + H + I M Sbjct: 1 GGDHAPSEVIDGVLKYASANQDLHIILVGDKDAIEPHLDKLP---KNITIIHAQSVIEMT 57 Query: 81 ERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLA 140 + P A+RR N SSM A+ VK+ +A +V++AGN+GAL+ +A L L RI G+DRP+L Sbjct: 58 DTPVRAIRRKVN-SSMQLAMNLVKEGRADAVISAGNSGALMGLALLRLGRIKGIDRPALM 116 Query: 141 AFWPTV-KGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLNVGTEEIK 199 PTV ++LDVGA + ++VQ +++GS +++ V G++ P +GLLN+GTE+ K Sbjct: 117 TLLPTVNGDWFVLLDVGANVDCKPKYLVQFALMGSVYSKKVLGVDSPRVGLLNIGTEDNK 176 Query: 200 GNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKAAEGAVRHI 259 GND+ +E+ +LL+ + + G +EA D+ G DV+V +GF+GN+ +K EG + I Sbjct: 177 GNDLHKETFQLLKED--PNINFIGNVEARDLLDGVCDVLVCDGFTGNVVLKTMEGVAKTI 234 Query: 260 SGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKS 319 +L+ TL S++ L +K L+ +K+ FD N+ G VL G++ LV+K HGSSD+++ Sbjct: 235 LSILKDEYKSTLRSKLAALFLKPILKSLKQKFDYANYGGAVLFGLNKLVIKSHGSSDSRA 294 Query: 320 IFNVLGIAHNMSQNGFIDMVK 340 F+ + AH ++ I+ +K Sbjct: 295 FFSAIRQAHEAVKSQVINRIK 315 >gnl|CDD|172371 PRK13845, PRK13845, putative glycerol-3-phosphate acyltransferase PlsX; Provisional. Length = 437 Score = 174 bits (443), Expect = 3e-44 Identities = 114/332 (34%), Positives = 189/332 (56%), Gaps = 13/332 (3%) Query: 15 ISLDLMGGDLGARDLILGASKFLEAHP-RIRFLMYGDAKVCLPI-LDSHPLLKERSCFHH 72 +++D MGGD ++ G + + P I+F+ + L LL++ H Sbjct: 97 VAVDGMGGDYAPGPILEGCLQAISRLPLNIKFVGEIEKVKEAAEALGLEELLEKAIDAGH 156 Query: 73 CEV-----SIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLC 127 E+ SI MDE A A+R+ ++ +S+ A++ VKK +A +V +AGN+GA++A A Sbjct: 157 LELIASGPSIGMDEE-ATAVRKKKD-ASINVAMDLVKKGKALAVYSAGNSGAMMASAIFR 214 Query: 128 LSRISGVDRPSLAAFWPTV-KGK-CIILDVGATIGSTVSHMVQLSILGSFFARSVAGINC 185 L R+ G+DRP++ A +PT G+ ++LDVGA + S++ Q ++LG+ ++R V + Sbjct: 215 LGRLKGIDRPAIGALFPTKDPGQPVLVLDVGANMDCKPSYLHQFALLGNIYSRDVLQVKK 274 Query: 186 PSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSG 245 P IGLLN+G EE KGND+ ++ LL E F + G E D+ G DV+V +GF+G Sbjct: 275 PRIGLLNIGEEECKGNDLSLKTFELLSEE--KRFHFAGNCEGRDVLSGDFDVVVCDGFTG 332 Query: 246 NIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVD 305 N+ +K E + VL+ L R ++G ++ +L+ +K+ D G +LLGV+ Sbjct: 333 NVLLKFLESVGSVLLDVLRAELPRGRRGKVGSAFLRSNLKRIKKRLDHAEHGGALLLGVN 392 Query: 306 GLVVKGHGSSDAKSIFNVLGIAHNMSQNGFID 337 G+ V GHGSS A S+ + L +AH+ + +G +D Sbjct: 393 GICVIGHGSSKALSVVSALRLAHSAASHGVMD 424 >gnl|CDD|139906 PRK13846, PRK13846, putative glycerol-3-phosphate acyltransferase PlsX; Provisional. Length = 316 Score = 152 bits (385), Expect = 1e-37 Identities = 98/340 (28%), Positives = 170/340 (50%), Gaps = 33/340 (9%) Query: 15 ISLDLMGGD---LGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFH 71 I +DLMGGD L +++ + + F ++ ++V IL + PL Sbjct: 5 IGIDLMGGDHSPLVVWEVLGDVLLSSSSEQPVEFTVFASSEVHHQILSNSPL-SRSPRII 63 Query: 72 HCEVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRI 131 E ++M++ P A+R+ SSM ++ +++++ + ++ GNT AL+ +AR + Sbjct: 64 TAEDFVSMEDSPLAAIRKKS--SSMALGLDYLQEDKLDAFISTGNTAALVTLARAKIPMF 121 Query: 132 SGVDRPSLAAFWPTVKGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLL 191 V RP+L PT++G +ILDVGA + MV + +G + + + P++GLL Sbjct: 122 PAVPRPALLVSVPTMRGFAVILDVGANVSVNPEEMVGFARMGLAYRQCLGSNQPPTLGLL 181 Query: 192 NVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKA 251 N+G+EE KG + +++ R+LR AF G IE+ D+ G VD++VT+GF+GNI +K Sbjct: 182 NIGSEERKGTEAHRQTFRMLRETFGSAF--LGNIESGDVFSGKVDIVVTDGFTGNIFLKT 239 Query: 252 AEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKG 311 AEG + +L L + +K D + G ++ G+ LV+K Sbjct: 240 AEGVFDFLRHILGDKLEKD----------------IKRQLDYTIYPGSIVCGLSKLVIKC 283 Query: 312 HGSSDAKSIFNVLGIAHNMSQNGFIDMVKDDM-QRVRDSL 350 HG + S+F GI+ G ID+ + + R+ L Sbjct: 284 HGKACGTSLFG--GIS------GSIDLARARVCSRILSRL 315 >gnl|CDD|185101 PRK15179, PRK15179, Vi polysaccharide biosynthesis protein TviE; Provisional. Length = 694 Score = 28.8 bits (64), Expect = 2.2 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 4/28 (14%) Query: 33 ASKFLEAHPRIRFLMYGDAKVCLPILDS 60 A +F +HP++RF+M G P+L+S Sbjct: 539 AQRFAASHPKVRFIMVGGG----PLLES 562 >gnl|CDD|181128 PRK07810, PRK07810, O-succinylhomoserine sulfhydrylase; Provisional. Length = 403 Score = 28.9 bits (65), Expect = 2.4 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 7/29 (24%) Query: 34 SKFLEAHPRIRFLMYGDAKVCLPILDSHP 62 ++FLE HP +R++ Y P L SHP Sbjct: 281 AEFLEGHPAVRWVRY-------PFLPSHP 302 >gnl|CDD|181680 PRK09182, PRK09182, DNA polymerase III subunit epsilon; Validated. Length = 294 Score = 28.4 bits (64), Expect = 2.7 Identities = 14/31 (45%), Positives = 17/31 (54%) Query: 119 ALIAMARLCLSRISGVDRPSLAAFWPTVKGK 149 ALIA A L ++ +G DRP L F P K Sbjct: 116 ALIAPADLIIAHNAGFDRPFLERFSPVFATK 146 >gnl|CDD|185010 PRK15050, PRK15050, 2-aminoethylphosphonate transport system permease PhnU; Provisional. Length = 296 Score = 28.0 bits (63), Expect = 3.4 Identities = 9/55 (16%), Positives = 19/55 (34%) Query: 123 MARLCLSRISGVDRPSLAAFWPTVKGKCIILDVGATIGSTVSHMVQLSILGSFFA 177 + R+ L ++G LA + + + T+ + +LG A Sbjct: 43 LVRVVLQSLTGEHGLGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGVLLA 97 >gnl|CDD|181101 PRK07742, PRK07742, phosphate butyryltransferase; Validated. Length = 299 Score = 28.1 bits (63), Expect = 4.0 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 16/73 (21%) Query: 44 RFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRRGRNVSSMWRAIEAV 103 RF +YG+ + +L+E + I + A+A A++AV Sbjct: 42 RFRLYGNQEKI------MGMLQEHGLQTSEHIEIIHAQSSAEAAE---------LAVKAV 86 Query: 104 KKNQAASVVTAGN 116 + + A V+ GN Sbjct: 87 RNGE-ADVLMKGN 98 >gnl|CDD|168292 PRK05906, PRK05906, lipid A biosynthesis lauroyl acyltransferase; Provisional. Length = 454 Score = 27.8 bits (62), Expect = 4.4 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 15/68 (22%) Query: 218 AFKYKGFIEANDIAK--------GFVDVIVTEGFSGN----IAIKAAEGAVRHISG--VL 263 AF K F E IA+ F++++ E +G+ IAI +E A V Sbjct: 65 AFPEKSFAERYQIARQSVQHVIITFLELLAVEKLAGHIDELIAIATSEDAPEGFFPEEVS 124 Query: 264 -QKSLNRT 270 Q+ L T Sbjct: 125 SQQELEHT 132 >gnl|CDD|180316 PRK05939, PRK05939, hypothetical protein; Provisional. Length = 397 Score = 27.7 bits (62), Expect = 5.1 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 7/32 (21%) Query: 31 LGASKFLEAHPRIRFLMYGDAKVCLPILDSHP 62 L ++FLEAHP++ A+V P L SHP Sbjct: 275 LALAQFLEAHPKV-------ARVYYPGLASHP 299 >gnl|CDD|152500 pfam12065, DUF3545, Protein of unknown function (DUF3545). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important. Length = 59 Score = 26.9 bits (60), Expect = 7.5 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 2/24 (8%) Query: 81 ERPADALRRGRNVSSMWRAIEAVK 104 ERP + + + WR IEA+K Sbjct: 13 ERPRRS--KSKPKKRKWREIEAIK 34 >gnl|CDD|183789 PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed. Length = 285 Score = 26.8 bits (60), Expect = 8.0 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 9/70 (12%) Query: 120 LIAMARLCLSRISGVDRP--SLAAFWPTVKGKCIILDVGATIGSTVSHMVQLSILGSFFA 177 I M L ++ + +P L F+PT+ G +L ++ +S +V L I+GS Sbjct: 2 DILMKFLAYFKLMRLHKPIGILLVFFPTLFG---LLLASHSLLPDISLLV-LFIIGSVLM 57 Query: 178 RSVAG--INC 185 RS AG IN Sbjct: 58 RS-AGCIIND 66 >gnl|CDD|106964 PHA00652, PHA00652, hypothetical protein. Length = 128 Score = 27.0 bits (59), Expect = 8.9 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Query: 100 IEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKCIILDVGATI 159 I A K NQ + + A A +AM R L ++G+ +P + +I +VG + Sbjct: 57 IVAGKSNQVSKLYAAD---AGLAMLRFWLRFLAGIQKPHAMTPHQVETAQVLIAEVGRIL 113 Query: 160 GSTVSHM 166 GS ++ + Sbjct: 114 GSWIARV 120 >gnl|CDD|132512 TIGR03472, HpnI, hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopanoid biosynthesis locus was described consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and another radical SAM enzyme (ZMO0874), HpnH. Although discontinuous in Z. mobilis, we continue the gene symbol sequence with HpnIJKL. Hopanoids are known to feature polar glycosyl head groups in many organisms. Length = 373 Score = 27.0 bits (60), Expect = 9.1 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 11/63 (17%) Query: 87 LRRGRNVSSMWRAIEA--VKKNQAASVVTA-------GNTGALIAMARLCLSRISGVDRP 137 L RGR V W + A + N SV+ A GA +A+ R L I G+ Sbjct: 162 LYRGRPVPGFWSRLGAMGINHNFLPSVMVARALGRARFCFGATMALRRATLEAIGGL--A 219 Query: 138 SLA 140 +LA Sbjct: 220 ALA 222 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.138 0.402 Gapped Lambda K H 0.267 0.0696 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,852,705 Number of extensions: 383847 Number of successful extensions: 700 Number of sequences better than 10.0: 1 Number of HSP's gapped: 688 Number of HSP's successfully gapped: 19 Length of query: 364 Length of database: 5,994,473 Length adjustment: 95 Effective length of query: 269 Effective length of database: 3,941,713 Effective search space: 1060320797 Effective search space used: 1060320797 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.2 bits)