RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780498|ref|YP_003064911.1| putative glycerol-3-phosphate acyltransferase PlsX [Candidatus Liberibacter asiaticus str. psy62] (364 letters) >1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} (A:) Length = 345 Score = 186 bits (473), Expect = 3e-48 Identities = 108/340 (31%), Positives = 180/340 (52%), Gaps = 7/340 (2%) Query: 14 TISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHC 73 I++D GGD + +I G K +EA + + GD L + R H Sbjct: 4 RIAVDAXGGDHAPKAVIDGVIKGIEAFDDLHITLVGDKTTIESHLTTTSD---RITVLHA 60 Query: 74 EVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISG 133 + I + P A+RR +N S + A + V +N+A + ++AGNTGAL + RI G Sbjct: 61 DEVIEPTDEPVRAVRRKKNSSXVLXA-QEVAENRADACISAGNTGALXTAGLFIVGRIKG 119 Query: 134 VDRPSLAAFWPTVKGKC-IILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN 192 +DRP+LA PTV G ++LDVGA + + H+VQ +I GS +++ V G+ P +GLLN Sbjct: 120 IDRPALAPTLPTVSGDGFLLLDVGANVDAKPEHLVQYAIXGSVYSQQVRGVTSPRVGLLN 179 Query: 193 VGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKAA 252 VGTE+ KGN++ +++ ++L+ F G +EA D+ DV+VT+GF+GN+ +K Sbjct: 180 VGTEDKKGNELTKQTFQILKETANINFI--GNVEARDLLDDVADVVVTDGFTGNVTLKTL 237 Query: 253 EGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGH 312 EG+ I + TL S++ ++K L+E K + N+ G L G+ V+K H Sbjct: 238 EGSALSIFKXXRDVXTSTLTSKLAAAVLKPKLKEXKXKXEYSNYGGASLFGLKAPVIKAH 297 Query: 313 GSSDAKSIFNVLGIAHNMSQNGFIDMVKDDMQRVRDSLLD 352 GSSD+ ++F + A +++++++ + Sbjct: 298 GSSDSNAVFRAIRQAREXVSQNVAALIQEEVKEEKTDEEG 337 >1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} (A:1-119,A:283-336) Length = 173 Score = 123 bits (311), Expect = 3e-29 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 5/123 (4%) Query: 11 NVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCF 70 N I++D GGD + ++ G + P I F +YG + + Sbjct: 2 NAXKIAVDAXGGDNAPQAIVEGVXLAKQDFPDIEFQLYGKEAEIKKYITDE----KNITI 57 Query: 71 HHCEVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSR 130 H + IA D+ P A+RR + +S A +AVK +A ++ +AGNTGAL+A + R Sbjct: 58 IHTDEKIASDDEPVKAIRRKKT-ASXVLAAQAVKNGEADAIFSAGNTGALLAAGLFIVGR 116 Query: 131 ISG 133 I Sbjct: 117 IKN 119 Score = 58.5 bits (142), Expect = 1e-09 Identities = 9/52 (17%), Positives = 21/52 (40%) Query: 293 PRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQNGFIDMVKDDMQ 344 G VL G+ V+K HG++ ++ + H + + + + + Sbjct: 118 KNKHGGAVLFGLKAPVIKTHGATGPDAVRYTIRQIHTXLETQVVPQLVEYYE 169 >1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} (A:120-228) Length = 109 Score = 119 bits (300), Expect = 6e-28 Identities = 39/111 (35%), Positives = 61/111 (54%), Gaps = 5/111 (4%) Query: 134 VDRPSLAAFWPTV---KGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGL 190 V+RP L + P LD+GA + H+VQ ++LGSF+A V + P +GL Sbjct: 1 VERPGLXSTLPVXGEPDKGFDXLDLGANADNKPEHLVQYAVLGSFYAEKVRNVQNPRVGL 60 Query: 191 LNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTE 241 LN GTEE KG+++ +++ LL + G +EA ++ G DV+VT+ Sbjct: 61 LNNGTEETKGSELTKKAFELLAA--DETINFVGNVEARELLNGVADVVVTD 109 >1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, PTB, nysgxrc; 2.40A {Enterococcus faecalis V583} (A:95-246) Length = 152 Score = 69.2 bits (169), Expect = 8e-13 Identities = 12/142 (8%), Positives = 37/142 (26%), Gaps = 21/142 (14%) Query: 130 RISGVDRPSLAAFWPTVKGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPS-- 187 + ++ ++ D I T + ++++ A+ + + Sbjct: 2 NKPILSHVAMVELPA--GKTFLLTDCAMNIAPTQATLIEIVENAKEVAQKLGLHHPKIAL 59 Query: 188 IGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDI--------------AKG 233 + ++ + + +E + G + + G Sbjct: 60 LSAAENFNPKMPSSVLAKEVTAHFNDQQE--ATVFGPLSLDLATSEEAVAHKRYSGPIMG 117 Query: 234 FVDVIV-TEGFSGNIAIKAAEG 254 D++V GN K+ Sbjct: 118 DADILVVPTIDVGNCLYKSLTL 139 >2iwb_A Methicillin resistance MECR1 protein; antibiotic resistance, bacterial antibiotic resistance, methicillin resistance, beta-lactamic antibiotics, MRSA; 1.8A {Staphylococcus aureus} PDB: 2iwc_A* 2iwd_A* (A:) Length = 246 Score = 29.9 bits (66), Expect = 0.53 Identities = 3/30 (10%), Positives = 7/30 (23%) Query: 96 MWRAIEAVKKNQAASVVTAGNTGALIAMAR 125 + + K + V+ A Sbjct: 12 LNQLAPYFKGFDGSFVLYNEREQAYSIYNE 41 >3equ_A PBP-2, penicillin-binding protein 2; class B transpeptidase, cell division, cell inner membrane, cell membrane, cell shape; HET: SEP; 2.40A {Neisseria gonorrhoeae} PDB: 3eqv_A* (A:201-258,A:446-542) Length = 155 Score = 28.0 bits (62), Expect = 2.2 Identities = 8/29 (27%), Positives = 15/29 (51%) Query: 96 MWRAIEAVKKNQAASVVTAGNTGALIAMA 124 + +A+E + VV TG ++A+A Sbjct: 12 LNKAVEYHQAKAGTVVVLDARTGEILALA 40 >3isg_A Penicillinase, beta-lactamase OXA-1; hydrolase, lysine carboxylation, antibiotic resistance, plasmid, transposable element; HET: KCX DRW; 1.40A {Escherichia coli} PDB: 1m6k_A* (A:) Length = 251 Score = 27.7 bits (60), Expect = 2.3 Identities = 5/26 (19%), Positives = 10/26 (38%) Query: 99 AIEAVKKNQAASVVTAGNTGALIAMA 124 A + + ++ +T A IA Sbjct: 8 ASPLFEGTEGCFLLYDASTNAEIAQF 33 >1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance, cell WALL, transmembrane; 2.4A {Streptococcus pneumoniae} (A:218-271,A:475-578) Length = 158 Score = 27.2 bits (60), Expect = 3.5 Identities = 7/29 (24%), Positives = 12/29 (41%) Query: 96 MWRAIEAVKKNQAASVVTAGNTGALIAMA 124 M E VK + + + TG ++A Sbjct: 12 MDAFQEKVKGKYMTATLVSAKTGEILATT 40 >1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} (A:166-228) Length = 63 Score = 26.9 bits (59), Expect = 3.7 Identities = 10/30 (33%), Positives = 19/30 (63%) Query: 308 VVKGHGSSDAKSIFNVLGIAHNMSQNGFID 337 ++ G SSD S+F+++ H +S+ F+D Sbjct: 6 IIGGXTSSDPFSVFSIIDRYHKISREEFVD 35 >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* (A:91-332) Length = 242 Score = 26.7 bits (57), Expect = 5.3 Identities = 11/71 (15%), Positives = 18/71 (25%) Query: 20 MGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAM 79 DL ++ G LP +L ++A+ Sbjct: 107 TVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAI 166 Query: 80 DERPADALRRG 90 R A+A G Sbjct: 167 LRRCAEAAGSG 177 >2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* (A:1-170,A:356-394) Length = 209 Score = 26.0 bits (57), Expect = 7.5 Identities = 10/36 (27%), Positives = 16/36 (44%) Query: 245 GNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLI 280 G I K A + LQ L+R ++RI ++ Sbjct: 120 GIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRML 155 >3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth factor, FGF-2 regulation; 2.30A {Homo sapiens} (A:) Length = 113 Score = 26.0 bits (57), Expect = 8.2 Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 3/28 (10%) Query: 55 LPILDSH---PLLKERSCFHHCEVSIAM 79 +PIL S P CFHH E + Sbjct: 76 IPILQSRFIAPAASLGFCFHHAESDSST 103 >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} (A:261-398) Length = 138 Score = 25.5 bits (55), Expect = 9.8 Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 4/66 (6%) Query: 35 KFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRRGRNVS 94 +FL P++ + Y L + L +++ ++ + R + Sbjct: 18 EFLARQPQVELIHY----PGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQ 73 Query: 95 SMWRAI 100 RA+ Sbjct: 74 LFSRAV 79 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.322 0.138 0.402 Gapped Lambda K H 0.267 0.0425 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,657,190 Number of extensions: 116324 Number of successful extensions: 333 Number of sequences better than 10.0: 1 Number of HSP's gapped: 326 Number of HSP's successfully gapped: 19 Length of query: 364 Length of database: 4,956,049 Length adjustment: 90 Effective length of query: 274 Effective length of database: 1,913,599 Effective search space: 524326126 Effective search space used: 524326126 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 55 (25.7 bits)