RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780498|ref|YP_003064911.1| putative glycerol-3-phosphate acyltransferase PlsX [Candidatus Liberibacter asiaticus str. psy62] (364 letters) >1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4 Length = 345 Score = 250 bits (640), Expect = 3e-67 Identities = 109/333 (32%), Positives = 187/333 (56%), Gaps = 7/333 (2%) Query: 14 TISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHC 73 I++D MGGD + +I G K +EA + + GD L + +R H Sbjct: 4 RIAVDAMGGDHAPKAVIDGVIKGIEAFDDLHITLVGDKTTIESHLTTTS---DRITVLHA 60 Query: 74 EVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISG 133 + I + P A+RR + SSM + V +N+A + ++AGNTGAL+ + RI G Sbjct: 61 DEVIEPTDEPVRAVRR-KKNSSMVLMAQEVAENRADACISAGNTGALMTAGLFIVGRIKG 119 Query: 134 VDRPSLAAFWPTVKGK-CIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN 192 +DRP+LA PTV G ++LDVGA + + H+VQ +I+GS +++ V G+ P +GLLN Sbjct: 120 IDRPALAPTLPTVSGDGFLLLDVGANVDAKPEHLVQYAIMGSVYSQQVRGVTSPRVGLLN 179 Query: 193 VGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKAA 252 VGTE+ KGN++ +++ ++L+ + G +EA D+ DV+VT+GF+GN+ +K Sbjct: 180 VGTEDKKGNELTKQTFQILKETA--NINFIGNVEARDLLDDVADVVVTDGFTGNVTLKTL 237 Query: 253 EGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGH 312 EG+ I +++ + TL S++ ++K L+E+K + N+ G L G+ V+K H Sbjct: 238 EGSALSIFKMMRDVMTSTLTSKLAAAVLKPKLKEMKMKMEYSNYGGASLFGLKAPVIKAH 297 Query: 313 GSSDAKSIFNVLGIAHNMSQNGFIDMVKDDMQR 345 GSSD+ ++F + A M +++++++ Sbjct: 298 GSSDSNAVFRAIRQAREMVSQNVAALIQEEVKE 330 >1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} SCOP: c.77.1.4 Length = 336 Score = 239 bits (611), Expect = 7e-64 Identities = 102/335 (30%), Positives = 175/335 (52%), Gaps = 11/335 (3%) Query: 14 TISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHC 73 I++D MGGD + ++ G + P I F +YG + + H Sbjct: 5 KIAVDAMGGDNAPQAIVEGVMLAKQDFPDIEFQLYGKEAEIKKYITDE----KNITIIHT 60 Query: 74 EVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISG 133 + IA D+ P A+RR + +SM A +AVK +A ++ +AGNTGAL+A + RI Sbjct: 61 DEKIASDDEPVKAIRRKKT-ASMVLAAQAVKNGEADAIFSAGNTGALLAAGLFIVGRIKN 119 Query: 134 VDRPSLAAFWPTVKGKC---IILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGL 190 V+RP L + P + +LD+GA + H+VQ ++LGSF+A V + P +GL Sbjct: 120 VERPGLMSTLPVMGEPDKGFDMLDLGANADNKPEHLVQYAVLGSFYAEKVRNVQNPRVGL 179 Query: 191 LNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIK 250 LN GTEE KG+++ +++ LL + G +EA ++ G DV+VT+GF+GN +K Sbjct: 180 LNNGTEETKGSELTKKAFELL--AADETINFVGNVEARELLNGVADVVVTDGFTGNAVLK 237 Query: 251 AAEGAVRHISGVLQKS-LNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVV 309 + EG ++ +L+ + L+ + ++G LL+K +L +K+ D G VL G+ V+ Sbjct: 238 SIEGTAMNMMSLLKTAILSEGVKGKMGALLLKNALHGMKDEMDYSKHGGAVLFGLKAPVI 297 Query: 310 KGHGSSDAKSIFNVLGIAHNMSQNGFIDMVKDDMQ 344 K HG++ ++ + H M + + + + + Sbjct: 298 KTHGATGPDAVRYTIRQIHTMLETQVVPQLVEYYE 332 >1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, PTB, nysgxrc; 2.40A {Enterococcus faecalis V583} Length = 279 Score = 71.0 bits (173), Expect = 3e-13 Identities = 34/236 (14%), Positives = 64/236 (27%), Gaps = 24/236 (10%) Query: 94 SSMWRAIEAVKKNQAASVVTAG-NTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKCII 152 + A+ V QA ++ T L+ ++ S A GK + Sbjct: 56 AVAQEAVSLVATGQAQILLKGIIQTHTLLKEMLKSEHQLKNKPILSHVAMVELPAGKTFL 115 Query: 153 L-DVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLL 211 L D I T + ++++ A+ + G++ P I LL+ + + Sbjct: 116 LTDCAMNIAPTQATLIEIVENAKEVAQKL-GLHHPKIALLSAAENFNPKMPSSVLAKEVT 174 Query: 212 RGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKAAEGAVRHISGVLQKSLNRTL 271 F A + Sbjct: 175 AHFNDQQEA--------------------TVFGPLSLDLATSEEAVAHKRYSGPIMGDAD 214 Query: 272 LSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIA 327 + + + + L + F GG ++G VV S +S F+ L A Sbjct: 215 ILVVPTIDVGNCLYKSLTLFGHAK-VGGTIVGTKVPVVLTSRSDSTESKFHSLRFA 269 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 40.3 bits (94), Expect = 7e-04 Identities = 58/382 (15%), Positives = 110/382 (28%), Gaps = 159/382 (41%) Query: 22 GDLGARDLILGA------SKFL---EAHPRIRFLMYGDAKVCLPILDSHPLLKE----RS 68 +G D +L + +L + H L + L+K ++ Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALA---------AKLLQENDTTLVKTKELIKN 125 Query: 69 CFHHCEVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTA----GNT------- 117 ++ +RP ++ S+++RA V + A +V GNT Sbjct: 126 YITARIMA----KRP----FDKKSNSALFRA---VGEGNA-QLVAIFGGQGNTDDYFEEL 173 Query: 118 -----------GALIAMARLCLSRISGVDRPSLAAFWPTVKGKCIILDV-----GATIGS 161 G LI + LS + + +G L++ + + Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELI-RTTLDAEKVFT--QG----LNILEWLENPS--N 224 Query: 162 T--VSHMVQLSILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAF 219 T +++ S+ I+CP IG++ + + +L + LR GA Sbjct: 225 TPDKDYLL-----------SIP-ISCPLIGVIQLAHYVVTAK-LLGFTPGELRSYLKGAT 271 Query: 220 KY-KGFIEANDIAKGFVDVIVT--EGFSGNIAIKA------------------------- 251 + +G + A IA E F + KA Sbjct: 272 GHSQGLVTAVAIA------ETDSWESFFVS-VRKAITVLFFIGVRCYEAYPNTSLPPSIL 324 Query: 252 ------AEG------AVRHIS-GVLQK---SLNRTL--LSRIGCLLIKKSLREVKEGFDP 293 EG ++ +++ +Q N L ++ L+ G Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN--------G--A 374 Query: 294 RNFNGGVLLGVDGLVVKGHGSS 315 +N VV G S Sbjct: 375 KNL-----------VVSGPPQS 385 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 32.7 bits (73), Expect = 0.14 Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 12/32 (37%) Query: 33 ASKFLEAHPRIRFLMYGDAKVCLPILDSHPLL 64 A K L+A ++ +Y D DS P L Sbjct: 21 ALKKLQA--SLK--LYAD--------DSAPAL 40 Score = 32.3 bits (72), Expect = 0.19 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 32/59 (54%) Query: 101 EAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKCIILDVGATI 159 +A+KK QA+ + A ++ P+LA +K AT+ Sbjct: 20 QALKKLQASLKLYADDSA------------------PALA-----IK---------ATM 46 Score = 31.5 bits (70), Expect = 0.34 Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 28/48 (58%) Query: 204 LQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKA 251 LQ S +L Y A+D A +AIKA Sbjct: 25 LQASLKL----------Y-----ADDSAPA-------------LAIKA 44 Score = 31.1 bits (69), Expect = 0.44 Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 8/34 (23%) Query: 66 ERSCFHHCEVSIAM---DERPADALRRGRNVSSM 96 E+ + S+ + D PA A++ ++M Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK-----ATM 46 >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 Score = 26.4 bits (57), Expect = 9.8 Identities = 8/34 (23%), Positives = 14/34 (41%) Query: 136 RPSLAAFWPTVKGKCIILDVGATIGSTVSHMVQL 169 + L + P KG +LD+G G + + Sbjct: 29 KARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE 62 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.138 0.402 Gapped Lambda K H 0.267 0.0604 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,035,348 Number of extensions: 138664 Number of successful extensions: 404 Number of sequences better than 10.0: 1 Number of HSP's gapped: 397 Number of HSP's successfully gapped: 14 Length of query: 364 Length of database: 5,693,230 Length adjustment: 94 Effective length of query: 270 Effective length of database: 3,414,294 Effective search space: 921859380 Effective search space used: 921859380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 57 (26.0 bits)