RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780498|ref|YP_003064911.1| putative glycerol-3-phosphate
acyltransferase PlsX [Candidatus Liberibacter asiaticus str. psy62]
(364 letters)
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural
genomics, unknown function; HET: MSE; 2.95A {Bacillus
subtilis} SCOP: c.77.1.4
Length = 345
Score = 250 bits (640), Expect = 3e-67
Identities = 109/333 (32%), Positives = 187/333 (56%), Gaps = 7/333 (2%)
Query: 14 TISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHC 73
I++D MGGD + +I G K +EA + + GD L + +R H
Sbjct: 4 RIAVDAMGGDHAPKAVIDGVIKGIEAFDDLHITLVGDKTTIESHLTTTS---DRITVLHA 60
Query: 74 EVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISG 133
+ I + P A+RR + SSM + V +N+A + ++AGNTGAL+ + RI G
Sbjct: 61 DEVIEPTDEPVRAVRR-KKNSSMVLMAQEVAENRADACISAGNTGALMTAGLFIVGRIKG 119
Query: 134 VDRPSLAAFWPTVKGK-CIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN 192
+DRP+LA PTV G ++LDVGA + + H+VQ +I+GS +++ V G+ P +GLLN
Sbjct: 120 IDRPALAPTLPTVSGDGFLLLDVGANVDAKPEHLVQYAIMGSVYSQQVRGVTSPRVGLLN 179
Query: 193 VGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKAA 252
VGTE+ KGN++ +++ ++L+ + G +EA D+ DV+VT+GF+GN+ +K
Sbjct: 180 VGTEDKKGNELTKQTFQILKETA--NINFIGNVEARDLLDDVADVVVTDGFTGNVTLKTL 237
Query: 253 EGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGH 312
EG+ I +++ + TL S++ ++K L+E+K + N+ G L G+ V+K H
Sbjct: 238 EGSALSIFKMMRDVMTSTLTSKLAAAVLKPKLKEMKMKMEYSNYGGASLFGLKAPVIKAH 297
Query: 313 GSSDAKSIFNVLGIAHNMSQNGFIDMVKDDMQR 345
GSSD+ ++F + A M +++++++
Sbjct: 298 GSSDSNAVFRAIRQAREMVSQNVAALIQEEVKE 330
>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural
genomics, enterococcus faecalis V583, PSI, protein
structure initiative; HET: MSE; 2.26A {Enterococcus
faecalis} SCOP: c.77.1.4
Length = 336
Score = 239 bits (611), Expect = 7e-64
Identities = 102/335 (30%), Positives = 175/335 (52%), Gaps = 11/335 (3%)
Query: 14 TISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHC 73
I++D MGGD + ++ G + P I F +YG + + H
Sbjct: 5 KIAVDAMGGDNAPQAIVEGVMLAKQDFPDIEFQLYGKEAEIKKYITDE----KNITIIHT 60
Query: 74 EVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISG 133
+ IA D+ P A+RR + +SM A +AVK +A ++ +AGNTGAL+A + RI
Sbjct: 61 DEKIASDDEPVKAIRRKKT-ASMVLAAQAVKNGEADAIFSAGNTGALLAAGLFIVGRIKN 119
Query: 134 VDRPSLAAFWPTVKGKC---IILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGL 190
V+RP L + P + +LD+GA + H+VQ ++LGSF+A V + P +GL
Sbjct: 120 VERPGLMSTLPVMGEPDKGFDMLDLGANADNKPEHLVQYAVLGSFYAEKVRNVQNPRVGL 179
Query: 191 LNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIK 250
LN GTEE KG+++ +++ LL + G +EA ++ G DV+VT+GF+GN +K
Sbjct: 180 LNNGTEETKGSELTKKAFELL--AADETINFVGNVEARELLNGVADVVVTDGFTGNAVLK 237
Query: 251 AAEGAVRHISGVLQKS-LNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVV 309
+ EG ++ +L+ + L+ + ++G LL+K +L +K+ D G VL G+ V+
Sbjct: 238 SIEGTAMNMMSLLKTAILSEGVKGKMGALLLKNALHGMKDEMDYSKHGGAVLFGLKAPVI 297
Query: 310 KGHGSSDAKSIFNVLGIAHNMSQNGFIDMVKDDMQ 344
K HG++ ++ + H M + + + + +
Sbjct: 298 KTHGATGPDAVRYTIRQIHTMLETQVVPQLVEYYE 332
>1yco_A Branched-chain phosphotransacylase; structural genomics, protein
structure initiative, PSI, PTB, nysgxrc; 2.40A
{Enterococcus faecalis V583}
Length = 279
Score = 71.0 bits (173), Expect = 3e-13
Identities = 34/236 (14%), Positives = 64/236 (27%), Gaps = 24/236 (10%)
Query: 94 SSMWRAIEAVKKNQAASVVTAG-NTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKCII 152
+ A+ V QA ++ T L+ ++ S A GK +
Sbjct: 56 AVAQEAVSLVATGQAQILLKGIIQTHTLLKEMLKSEHQLKNKPILSHVAMVELPAGKTFL 115
Query: 153 L-DVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLL 211
L D I T + ++++ A+ + G++ P I LL+ + +
Sbjct: 116 LTDCAMNIAPTQATLIEIVENAKEVAQKL-GLHHPKIALLSAAENFNPKMPSSVLAKEVT 174
Query: 212 RGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKAAEGAVRHISGVLQKSLNRTL 271
F A +
Sbjct: 175 AHFNDQQEA--------------------TVFGPLSLDLATSEEAVAHKRYSGPIMGDAD 214
Query: 272 LSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIA 327
+ + + + L + F GG ++G VV S +S F+ L A
Sbjct: 215 ILVVPTIDVGNCLYKSLTLFGHAK-VGGTIVGTKVPVVLTSRSDSTESKFHSLRFA 269
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 40.3 bits (94), Expect = 7e-04
Identities = 58/382 (15%), Positives = 110/382 (28%), Gaps = 159/382 (41%)
Query: 22 GDLGARDLILGA------SKFL---EAHPRIRFLMYGDAKVCLPILDSHPLLKE----RS 68
+G D +L + +L + H L + L+K ++
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALA---------AKLLQENDTTLVKTKELIKN 125
Query: 69 CFHHCEVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTA----GNT------- 117
++ +RP ++ S+++RA V + A +V GNT
Sbjct: 126 YITARIMA----KRP----FDKKSNSALFRA---VGEGNA-QLVAIFGGQGNTDDYFEEL 173
Query: 118 -----------GALIAMARLCLSRISGVDRPSLAAFWPTVKGKCIILDV-----GATIGS 161
G LI + LS + + +G L++ + +
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELI-RTTLDAEKVFT--QG----LNILEWLENPS--N 224
Query: 162 T--VSHMVQLSILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAF 219
T +++ S+ I+CP IG++ + + +L + LR GA
Sbjct: 225 TPDKDYLL-----------SIP-ISCPLIGVIQLAHYVVTAK-LLGFTPGELRSYLKGAT 271
Query: 220 KY-KGFIEANDIAKGFVDVIVT--EGFSGNIAIKA------------------------- 251
+ +G + A IA E F + KA
Sbjct: 272 GHSQGLVTAVAIA------ETDSWESFFVS-VRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 252 ------AEG------AVRHIS-GVLQK---SLNRTL--LSRIGCLLIKKSLREVKEGFDP 293
EG ++ +++ +Q N L ++ L+ G
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN--------G--A 374
Query: 294 RNFNGGVLLGVDGLVVKGHGSS 315
+N VV G S
Sbjct: 375 KNL-----------VVSGPPQS 385
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.7 bits (73), Expect = 0.14
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 12/32 (37%)
Query: 33 ASKFLEAHPRIRFLMYGDAKVCLPILDSHPLL 64
A K L+A ++ +Y D DS P L
Sbjct: 21 ALKKLQA--SLK--LYAD--------DSAPAL 40
Score = 32.3 bits (72), Expect = 0.19
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 32/59 (54%)
Query: 101 EAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKCIILDVGATI 159
+A+KK QA+ + A ++ P+LA +K AT+
Sbjct: 20 QALKKLQASLKLYADDSA------------------PALA-----IK---------ATM 46
Score = 31.5 bits (70), Expect = 0.34
Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 28/48 (58%)
Query: 204 LQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKA 251
LQ S +L Y A+D A +AIKA
Sbjct: 25 LQASLKL----------Y-----ADDSAPA-------------LAIKA 44
Score = 31.1 bits (69), Expect = 0.44
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 66 ERSCFHHCEVSIAM---DERPADALRRGRNVSSM 96
E+ + S+ + D PA A++ ++M
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK-----ATM 46
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 26.4 bits (57), Expect = 9.8
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 136 RPSLAAFWPTVKGKCIILDVGATIGSTVSHMVQL 169
+ L + P KG +LD+G G + +
Sbjct: 29 KARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE 62
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.138 0.402
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,035,348
Number of extensions: 138664
Number of successful extensions: 404
Number of sequences better than 10.0: 1
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 14
Length of query: 364
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 270
Effective length of database: 3,414,294
Effective search space: 921859380
Effective search space used: 921859380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.0 bits)