Query gi|254780499|ref|YP_003064912.1| hypothetical protein CLIBASIA_01930 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 167 No_of_seqs 126 out of 658 Neff 8.0 Searched_HMMs 33803 Date Wed Jun 1 17:06:59 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780499.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1gax_A Valrs, valyl-tRNA synt 27.7 17 0.00051 16.1 0.3 15 72-86 29-43 (44) 2 >2elx_A Zinc finger protein 40 9.7 50 0.0015 13.6 -0.8 14 74-87 9-22 (35) 3 >1o65_A Hypothetical protein Y 8.4 95 0.0028 12.0 0.1 54 29-82 74-136 (193) 4 >1oru_A YUAD protein; structur 7.8 1E+02 0.003 11.9 0.1 56 27-82 72-136 (195) 5 >2d8t_A Dactylidin, ring finge 7.2 87 0.0026 12.2 -0.5 18 72-89 15-32 (41) 6 >1gjw_A Maltodextrin glycosylt 6.7 1.5E+02 0.0043 11.0 0.5 15 3-17 1-15 (94) 7 >3i99_A UDP-N-acetylenolpyruvo 6.7 1.3E+02 0.004 11.2 0.2 14 143-156 24-37 (38) 8 >1zfo_A LAsp-1; LIM domain, zi 5.9 1.5E+02 0.0045 10.9 0.2 11 72-82 3-13 (31) 9 >1es6_A Matrix protein VP40; b 5.7 1.6E+02 0.0048 10.7 0.2 30 57-86 29-58 (62) 10 >1i4o_C X-linked IAP, baculovi 5.6 1.7E+02 0.0051 10.6 0.3 11 148-158 35-45 (141) No 1 >>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} (A:172-195,A:337-356) Probab=27.66 E-value=17 Score=16.15 Aligned_cols=15 Identities=13% Similarity=0.357 Sum_probs=12.0 Q ss_pred EECCEEECCCCEEEE Q ss_conf 812013333220344 Q gi|254780499|r 72 IQSCVITLEPLLSEV 86 (167) Q Consensus 72 ~~~C~rcL~pv~~~i 86 (167) ...|+||-.|+++.| T Consensus 29 latcsrcgtpieyai 43 (44) T 1gax_A 29 LATCSRCGTPIEYAI 43 (44) T ss_dssp CEEETTTCSBCCEEE T ss_pred CCCCCCCCCCEEEEC T ss_conf 564345798402211 No 2 >>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:) Probab=9.71 E-value=50 Score=13.56 Aligned_cols=14 Identities=21% Similarity=0.648 Sum_probs=11.0 Q ss_pred CCEEECCCCEEEEE Q ss_conf 20133332203447 Q gi|254780499|r 74 SCVITLEPLLSEVE 87 (167) Q Consensus 74 ~C~rcL~pv~~~i~ 87 (167) .|+.||+-|...|. T Consensus 9 VCa~ClkKFVSsiR 22 (35) T 2elx_A 9 VCALCLKKFVSSIR 22 (35) T ss_dssp ECSSSCCEESSHHH T ss_pred EHHHHHHHHHHHHH T ss_conf 18999999999998 No 3 >>1o65_A Hypothetical protein YIIM; structural genomics, unknown function; 2.33A {Escherichia coli} (A:1-193) Probab=8.39 E-value=95 Score=12.02 Aligned_cols=54 Identities=6% Similarity=-0.057 Sum_probs=30.5 Q ss_pred HHHHHHHHHHCC----CCCCCEEEEEEEEE---ECC--CCEEEEEEEEEEEEEECCEEECCCC Q ss_conf 999999998618----98743479999999---827--8829999999999981201333322 Q gi|254780499|r 29 SLDCKKLAEQLG----VMSVESWCADVKLS---VWK--KVGVRMSGNLYATIIQSCVITLEPL 82 (167) Q Consensus 29 ~~~~~~la~~~~----v~~i~~l~~~~~l~---~~~--~~~v~v~G~i~a~v~~~C~rcL~pv 82 (167) .+.+..+++++. ......+...+-+. +.. .+..+-=|.+.-.+++.|.||-.+- T Consensus 74 ~~sl~~l~~~~~~~~~~~~~~rfr~Nivv~G~~~~~~~~g~~l~iG~~~l~v~~~~~rC~~~~ 136 (193) T 1o65_A 74 REHYLYWAREFPEQAELFVAPAFGENLSTDGLTESNVYMGDIFRWGEALIQVSQPRSPCYKLN 136 (193) T ss_dssp THHHHHHHHHCGGGGGGCSTTTTCCSEEESSCCTTTCBTTCEEEETTEEEEEEEECCCCTHHH T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCHHHCCCCCEEEECCEEEEEECCCCCCCHHH T ss_conf 878999999845155666877652788846868878676778965878999970665521699 No 4 >>1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Bacillus subtilis} (A:) Probab=7.80 E-value=1e+02 Score=11.87 Aligned_cols=56 Identities=16% Similarity=0.078 Sum_probs=32.8 Q ss_pred CCHHHHHHHHHHCCCCC--CCEEEEEEEEEE---CCCC---EEEEEE-EEEEEEEECCEEECCCC Q ss_conf 39999999998618987--434799999998---2788---299999-99999981201333322 Q gi|254780499|r 27 ADSLDCKKLAEQLGVMS--VESWCADVKLSV---WKKV---GVRMSG-NLYATIIQSCVITLEPL 82 (167) Q Consensus 27 ~~~~~~~~la~~~~v~~--i~~l~~~~~l~~---~~~~---~v~v~G-~i~a~v~~~C~rcL~pv 82 (167) .+.+.+..++++++-.. ...+...+-+.- +..+ ..+.-| .+.-.+++.|.||-.+- T Consensus 72 ~s~~sl~~l~~~~~~~~v~~~rfR~Nivv~G~~~~~e~~~g~~~~iG~~v~l~v~~~~~rC~~~~ 136 (195) T 1oru_A 72 VSIEECNEIALKXGVPRILPEWLGANVAVSGXPDLTSLKEGSRIIFPSGAALLCEGENDPCIQPG 136 (195) T ss_dssp EEHHHHHHHHHHHTCSCCCGGGGTCSEEEESCTTGGGCCTTCEEECTTSCEEEEEEECCCCHHHH T ss_pred CCHHHHHHHHHHCCCCCCCHHHCCCEEEEECCCCHHHCCCCCEEEECCCEEEEEECCCCCCCCHH T ss_conf 05999999998749865882233584999467637766756359973768999813778731511 No 5 >>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:1-41) Probab=7.23 E-value=87 Score=12.24 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=13.9 Q ss_pred EECCEEECCCCEEEEEEE Q ss_conf 812013333220344788 Q gi|254780499|r 72 IQSCVITLEPLLSEVEDT 89 (167) Q Consensus 72 ~~~C~rcL~pv~~~i~~~ 89 (167) ..+|.+||++-.+++... T Consensus 15 ~~eC~vCLq~cv~P~~lP 32 (41) T 2d8t_A 15 VPECAICLQTCVHPVSLP 32 (41) T ss_dssp CCBCSSSSSBCSSEEEET T ss_pred CCCCCEECCCCCCEEEEC T ss_conf 987971690129808808 No 6 >>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} (A:216-309) Probab=6.74 E-value=1.5e+02 Score=10.96 Aligned_cols=15 Identities=20% Similarity=0.476 Sum_probs=10.7 Q ss_pred CCCCCEEEEEHHHCC Q ss_conf 879820899987567 Q gi|254780499|r 3 NHSNYSYPVSVQAVF 17 (167) Q Consensus 3 ~~~~fs~~I~i~~l~ 17 (167) +.|+|-+.|.++++. T Consensus 1 EHPdWFYWI~vdel~ 15 (94) T 1gjw_A 1 EHPDWFYWIKVEELA 15 (94) T ss_dssp TCGGGSCCEEGGGST T ss_pred HCCCCCCCCCCCCCC T ss_conf 677743235566556 No 7 >>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} (A:239-276) Probab=6.65 E-value=1.3e+02 Score=11.19 Aligned_cols=14 Identities=21% Similarity=0.622 Sum_probs=10.3 Q ss_pred HCCCCCCCCCCCCC Q ss_conf 73888788998703 Q gi|254780499|r 143 IAINPYPKKEGITF 156 (167) Q Consensus 143 LalP~yPr~~g~~~ 156 (167) =.+|-||..+|+++ T Consensus 24 p~~p~yp~~dgvKl 37 (38) T 3i99_A 24 PDVVAYPAEQGVKV 37 (38) T ss_dssp TTCCEECCSSSEEE T ss_pred CCCCCCHHCCCCCC T ss_conf 76642101134432 No 8 >>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} (A:) Probab=5.94 E-value=1.5e+02 Score=10.86 Aligned_cols=11 Identities=9% Similarity=0.081 Sum_probs=7.3 Q ss_pred EECCEEECCCC Q ss_conf 81201333322 Q gi|254780499|r 72 IQSCVITLEPL 82 (167) Q Consensus 72 ~~~C~rcL~pv 82 (167) ...|+||...| T Consensus 3 n~~CaRC~k~V 13 (31) T 1zfo_A 3 NPNCARCGKIV 13 (31) T ss_dssp CCBCSSSCSBC T ss_pred CCCCCCCCCCC T ss_conf 86412247720 No 9 >>1es6_A Matrix protein VP40; beta sandwich, anti-parallel strands, beta sheet, helix, viral protein; 2.00A {Ebola virus SP} (A:165-196,A:267-296) Probab=5.72 E-value=1.6e+02 Score=10.73 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=22.6 Q ss_pred CCCEEEEEEEEEEEEEECCEEECCCCEEEE Q ss_conf 788299999999999812013333220344 Q gi|254780499|r 57 KKVGVRMSGNLYATIIQSCVITLEPLLSEV 86 (167) Q Consensus 57 ~~~~v~v~G~i~a~v~~~C~rcL~pv~~~i 86 (167) ++.+-.-.|.++..++|.|.-|-.|-..+. T Consensus 29 gkkgpis~gdltmvitqdcd~chspas~p~ 58 (62) T 1es6_A 29 GKKGPVAPGDLTMVITQDCDTCHSPASLPA 58 (62) T ss_dssp ----CTTTTCCEEEEEESCCCCSCTTCCC- T ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCC T ss_conf 777678987547997167665578545753 No 10 >>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis/hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A (C:) Probab=5.58 E-value=1.7e+02 Score=10.60 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=0.0 Q ss_pred CCCCCCCCCCC Q ss_conf 78899870345 Q gi|254780499|r 148 YPKKEGITFSN 158 (167) Q Consensus 148 yPr~~g~~~~~ 158 (167) |||+||..++. T Consensus 35 ~~~~p~m~~~~ 45 (141) T 1i4o_C 35 YPRNPAMYSEE 45 (141) T ss_pred CCCCCCHHHHH T ss_conf 35894122367 Done!