Query         gi|254780499|ref|YP_003064912.1| hypothetical protein CLIBASIA_01930 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 167
No_of_seqs    126 out of 658
Neff          8.0 
Searched_HMMs 33803
Date          Wed Jun  1 17:06:59 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780499.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1gax_A Valrs, valyl-tRNA synt  27.7      17 0.00051   16.1   0.3   15   72-86     29-43  (44)
  2 >2elx_A Zinc finger protein 40   9.7      50  0.0015   13.6  -0.8   14   74-87      9-22  (35)
  3 >1o65_A Hypothetical protein Y   8.4      95  0.0028   12.0   0.1   54   29-82     74-136 (193)
  4 >1oru_A YUAD protein; structur   7.8   1E+02   0.003   11.9   0.1   56   27-82     72-136 (195)
  5 >2d8t_A Dactylidin, ring finge   7.2      87  0.0026   12.2  -0.5   18   72-89     15-32  (41)
  6 >1gjw_A Maltodextrin glycosylt   6.7 1.5E+02  0.0043   11.0   0.5   15    3-17      1-15  (94)
  7 >3i99_A UDP-N-acetylenolpyruvo   6.7 1.3E+02   0.004   11.2   0.2   14  143-156    24-37  (38)
  8 >1zfo_A LAsp-1; LIM domain, zi   5.9 1.5E+02  0.0045   10.9   0.2   11   72-82      3-13  (31)
  9 >1es6_A Matrix protein VP40; b   5.7 1.6E+02  0.0048   10.7   0.2   30   57-86     29-58  (62)
 10 >1i4o_C X-linked IAP, baculovi   5.6 1.7E+02  0.0051   10.6   0.3   11  148-158    35-45  (141)

No 1  
>>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} (A:172-195,A:337-356)
Probab=27.66  E-value=17  Score=16.15  Aligned_cols=15  Identities=13%  Similarity=0.357  Sum_probs=12.0

Q ss_pred             EECCEEECCCCEEEE
Q ss_conf             812013333220344
Q gi|254780499|r   72 IQSCVITLEPLLSEV   86 (167)
Q Consensus        72 ~~~C~rcL~pv~~~i   86 (167)
                      ...|+||-.|+++.|
T Consensus        29 latcsrcgtpieyai   43 (44)
T 1gax_A           29 LATCSRCGTPIEYAI   43 (44)
T ss_dssp             CEEETTTCSBCCEEE
T ss_pred             CCCCCCCCCCEEEEC
T ss_conf             564345798402211


No 2  
>>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:)
Probab=9.71  E-value=50  Score=13.56  Aligned_cols=14  Identities=21%  Similarity=0.648  Sum_probs=11.0

Q ss_pred             CCEEECCCCEEEEE
Q ss_conf             20133332203447
Q gi|254780499|r   74 SCVITLEPLLSEVE   87 (167)
Q Consensus        74 ~C~rcL~pv~~~i~   87 (167)
                      .|+.||+-|...|.
T Consensus         9 VCa~ClkKFVSsiR   22 (35)
T 2elx_A            9 VCALCLKKFVSSIR   22 (35)
T ss_dssp             ECSSSCCEESSHHH
T ss_pred             EHHHHHHHHHHHHH
T ss_conf             18999999999998


No 3  
>>1o65_A Hypothetical protein YIIM; structural genomics, unknown function; 2.33A {Escherichia coli} (A:1-193)
Probab=8.39  E-value=95  Score=12.02  Aligned_cols=54  Identities=6%  Similarity=-0.057  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHCC----CCCCCEEEEEEEEE---ECC--CCEEEEEEEEEEEEEECCEEECCCC
Q ss_conf             999999998618----98743479999999---827--8829999999999981201333322
Q gi|254780499|r   29 SLDCKKLAEQLG----VMSVESWCADVKLS---VWK--KVGVRMSGNLYATIIQSCVITLEPL   82 (167)
Q Consensus        29 ~~~~~~la~~~~----v~~i~~l~~~~~l~---~~~--~~~v~v~G~i~a~v~~~C~rcL~pv   82 (167)
                      .+.+..+++++.    ......+...+-+.   +..  .+..+-=|.+.-.+++.|.||-.+-
T Consensus        74 ~~sl~~l~~~~~~~~~~~~~~rfr~Nivv~G~~~~~~~~g~~l~iG~~~l~v~~~~~rC~~~~  136 (193)
T 1o65_A           74 REHYLYWAREFPEQAELFVAPAFGENLSTDGLTESNVYMGDIFRWGEALIQVSQPRSPCYKLN  136 (193)
T ss_dssp             THHHHHHHHHCGGGGGGCSTTTTCCSEEESSCCTTTCBTTCEEEETTEEEEEEEECCCCTHHH
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCHHHCCCCCEEEECCEEEEEECCCCCCCHHH
T ss_conf             878999999845155666877652788846868878676778965878999970665521699


No 4  
>>1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Bacillus subtilis} (A:)
Probab=7.80  E-value=1e+02  Score=11.87  Aligned_cols=56  Identities=16%  Similarity=0.078  Sum_probs=32.8

Q ss_pred             CCHHHHHHHHHHCCCCC--CCEEEEEEEEEE---CCCC---EEEEEE-EEEEEEEECCEEECCCC
Q ss_conf             39999999998618987--434799999998---2788---299999-99999981201333322
Q gi|254780499|r   27 ADSLDCKKLAEQLGVMS--VESWCADVKLSV---WKKV---GVRMSG-NLYATIIQSCVITLEPL   82 (167)
Q Consensus        27 ~~~~~~~~la~~~~v~~--i~~l~~~~~l~~---~~~~---~v~v~G-~i~a~v~~~C~rcL~pv   82 (167)
                      .+.+.+..++++++-..  ...+...+-+.-   +..+   ..+.-| .+.-.+++.|.||-.+-
T Consensus        72 ~s~~sl~~l~~~~~~~~v~~~rfR~Nivv~G~~~~~e~~~g~~~~iG~~v~l~v~~~~~rC~~~~  136 (195)
T 1oru_A           72 VSIEECNEIALKXGVPRILPEWLGANVAVSGXPDLTSLKEGSRIIFPSGAALLCEGENDPCIQPG  136 (195)
T ss_dssp             EEHHHHHHHHHHHTCSCCCGGGGTCSEEEESCTTGGGCCTTCEEECTTSCEEEEEEECCCCHHHH
T ss_pred             CCHHHHHHHHHHCCCCCCCHHHCCCEEEEECCCCHHHCCCCCEEEECCCEEEEEECCCCCCCCHH
T ss_conf             05999999998749865882233584999467637766756359973768999813778731511


No 5  
>>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:1-41)
Probab=7.23  E-value=87  Score=12.24  Aligned_cols=18  Identities=22%  Similarity=0.433  Sum_probs=13.9

Q ss_pred             EECCEEECCCCEEEEEEE
Q ss_conf             812013333220344788
Q gi|254780499|r   72 IQSCVITLEPLLSEVEDT   89 (167)
Q Consensus        72 ~~~C~rcL~pv~~~i~~~   89 (167)
                      ..+|.+||++-.+++...
T Consensus        15 ~~eC~vCLq~cv~P~~lP   32 (41)
T 2d8t_A           15 VPECAICLQTCVHPVSLP   32 (41)
T ss_dssp             CCBCSSSSSBCSSEEEET
T ss_pred             CCCCCEECCCCCCEEEEC
T ss_conf             987971690129808808


No 6  
>>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} (A:216-309)
Probab=6.74  E-value=1.5e+02  Score=10.96  Aligned_cols=15  Identities=20%  Similarity=0.476  Sum_probs=10.7

Q ss_pred             CCCCCEEEEEHHHCC
Q ss_conf             879820899987567
Q gi|254780499|r    3 NHSNYSYPVSVQAVF   17 (167)
Q Consensus         3 ~~~~fs~~I~i~~l~   17 (167)
                      +.|+|-+.|.++++.
T Consensus         1 EHPdWFYWI~vdel~   15 (94)
T 1gjw_A            1 EHPDWFYWIKVEELA   15 (94)
T ss_dssp             TCGGGSCCEEGGGST
T ss_pred             HCCCCCCCCCCCCCC
T ss_conf             677743235566556


No 7  
>>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} (A:239-276)
Probab=6.65  E-value=1.3e+02  Score=11.19  Aligned_cols=14  Identities=21%  Similarity=0.622  Sum_probs=10.3

Q ss_pred             HCCCCCCCCCCCCC
Q ss_conf             73888788998703
Q gi|254780499|r  143 IAINPYPKKEGITF  156 (167)
Q Consensus       143 LalP~yPr~~g~~~  156 (167)
                      =.+|-||..+|+++
T Consensus        24 p~~p~yp~~dgvKl   37 (38)
T 3i99_A           24 PDVVAYPAEQGVKV   37 (38)
T ss_dssp             TTCCEECCSSSEEE
T ss_pred             CCCCCCHHCCCCCC
T ss_conf             76642101134432


No 8  
>>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} (A:)
Probab=5.94  E-value=1.5e+02  Score=10.86  Aligned_cols=11  Identities=9%  Similarity=0.081  Sum_probs=7.3

Q ss_pred             EECCEEECCCC
Q ss_conf             81201333322
Q gi|254780499|r   72 IQSCVITLEPL   82 (167)
Q Consensus        72 ~~~C~rcL~pv   82 (167)
                      ...|+||...|
T Consensus         3 n~~CaRC~k~V   13 (31)
T 1zfo_A            3 NPNCARCGKIV   13 (31)
T ss_dssp             CCBCSSSCSBC
T ss_pred             CCCCCCCCCCC
T ss_conf             86412247720


No 9  
>>1es6_A Matrix protein VP40; beta sandwich, anti-parallel strands, beta sheet, helix, viral protein; 2.00A {Ebola virus SP} (A:165-196,A:267-296)
Probab=5.72  E-value=1.6e+02  Score=10.73  Aligned_cols=30  Identities=27%  Similarity=0.305  Sum_probs=22.6

Q ss_pred             CCCEEEEEEEEEEEEEECCEEECCCCEEEE
Q ss_conf             788299999999999812013333220344
Q gi|254780499|r   57 KKVGVRMSGNLYATIIQSCVITLEPLLSEV   86 (167)
Q Consensus        57 ~~~~v~v~G~i~a~v~~~C~rcL~pv~~~i   86 (167)
                      ++.+-.-.|.++..++|.|.-|-.|-..+.
T Consensus        29 gkkgpis~gdltmvitqdcd~chspas~p~   58 (62)
T 1es6_A           29 GKKGPVAPGDLTMVITQDCDTCHSPASLPA   58 (62)
T ss_dssp             ----CTTTTCCEEEEEESCCCCSCTTCCC-
T ss_pred             CCCCCCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf             777678987547997167665578545753


No 10 
>>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis/hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A (C:)
Probab=5.58  E-value=1.7e+02  Score=10.60  Aligned_cols=11  Identities=18%  Similarity=0.540  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCC
Q ss_conf             78899870345
Q gi|254780499|r  148 YPKKEGITFSN  158 (167)
Q Consensus       148 yPr~~g~~~~~  158 (167)
                      |||+||..++.
T Consensus        35 ~~~~p~m~~~~   45 (141)
T 1i4o_C           35 YPRNPAMYSEE   45 (141)
T ss_pred             CCCCCCHHHHH
T ss_conf             35894122367


Done!