Query gi|254780499|ref|YP_003064912.1| hypothetical protein CLIBASIA_01930 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 167
No_of_seqs 126 out of 658
Neff 8.0
Searched_HMMs 13730
Date Wed Jun 1 10:09:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780499.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xdza_ c.66.1.20 (A:) Glucose 10.1 33 0.0024 12.4 0.4 13 146-158 224-236 (239)
2 d1ur6b_ g.44.1.1 (B:) Not-4 N- 8.4 30 0.0022 12.6 -0.4 11 73-83 1-11 (52)
3 d1zy9a1 b.30.5.11 (A:1-177) Al 7.4 55 0.004 11.1 3.3 30 43-73 16-45 (177)
4 d1x3ha2 g.39.1.3 (A:43-74) Leu 6.6 55 0.004 11.2 0.2 11 74-84 1-11 (32)
5 d1wiga2 g.39.1.3 (A:33-73) Act 6.2 54 0.0039 11.2 0.0 10 75-84 2-11 (41)
6 d1zfoa_ g.39.1.4 (A:) LASP-1 { 5.8 64 0.0046 10.8 0.2 10 73-82 3-12 (30)
7 d1iyma_ g.44.1.1 (A:) EL5 RING 5.8 54 0.0039 11.2 -0.2 12 73-84 6-17 (55)
8 d1pbya2 a.3.1.7 (A:86-165) Qui 5.7 24 0.0018 13.1 -2.0 16 71-86 11-26 (80)
9 d1ut1a_ b.2.3.6 (A:) DraA/Afim 5.4 72 0.0052 10.5 3.5 25 63-87 8-32 (140)
10 d1bora_ g.44.1.1 (A:) Acute pr 5.4 64 0.0047 10.8 0.0 14 73-86 7-20 (56)
No 1
>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}
Probab=10.05 E-value=33 Score=12.36 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 8878899870345
Q gi|254780499|r 146 NPYPKKEGITFSN 158 (167)
Q Consensus 146 P~yPr~~g~~~~~ 158 (167)
.-|||++|+..-.
T Consensus 224 ~~yPR~~g~p~k~ 236 (239)
T d1xdza_ 224 KKYPRKPGTPNKS 236 (239)
T ss_dssp TTCSCSTTHHHHS
T ss_pred CCCCCCCCCCCCC
T ss_conf 7799999987888
No 2
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.36 E-value=30 Score=12.61 Aligned_cols=11 Identities=36% Similarity=0.785 Sum_probs=8.0
Q ss_pred ECCEEECCCCE
Q ss_conf 12013333220
Q gi|254780499|r 73 QSCVITLEPLL 83 (167)
Q Consensus 73 ~~C~rcL~pv~ 83 (167)
++|.+||+++.
T Consensus 1 leCpICl~~~~ 11 (52)
T d1ur6b_ 1 VECPLCMEPLE 11 (52)
T ss_dssp CEETTTTEECC
T ss_pred CCCCCCCHHHH
T ss_conf 99958782351
No 3
>d1zy9a1 b.30.5.11 (A:1-177) Alpha-galactosidase GalA N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=7.36 E-value=55 Score=11.14 Aligned_cols=30 Identities=10% Similarity=0.237 Sum_probs=23.7
Q ss_pred CCCEEEEEEEEEECCCCEEEEEEEEEEEEEE
Q ss_conf 7434799999998278829999999999981
Q gi|254780499|r 43 SVESWCADVKLSVWKKVGVRMSGNLYATIIQ 73 (167)
Q Consensus 43 ~i~~l~~~~~l~~~~~~~v~v~G~i~a~v~~ 73 (167)
.-+..++.+.+.... .||.++|++.|.+..
T Consensus 16 ~~~n~t~~~~~e~I~-~G~ki~g~vkGk~~~ 45 (177)
T d1zy9a1 16 KEKNFTVEFAVEKIH-LGWKISGRVKGSPGR 45 (177)
T ss_dssp ECSSEEEEEEEEEET-TEEEEEEEEEECCCE
T ss_pred ECCCEEEEEEEEECC-CCCEEEEEECCCCCE
T ss_conf 047569999986302-551899998574555
No 4
>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.63 E-value=55 Score=11.17 Aligned_cols=11 Identities=9% Similarity=0.202 Sum_probs=8.3
Q ss_pred CCEEECCCCEE
Q ss_conf 20133332203
Q gi|254780499|r 74 SCVITLEPLLS 84 (167)
Q Consensus 74 ~C~rcL~pv~~ 84 (167)
.|..|.+||+.
T Consensus 1 VC~~C~~PF~~ 11 (32)
T d1x3ha2 1 VCGDCFTSFST 11 (32)
T ss_dssp BCSSSCCBSCS
T ss_pred CCCCCCCCCCC
T ss_conf 95735795899
No 5
>d1wiga2 g.39.1.3 (A:33-73) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.24 E-value=54 Score=11.20 Aligned_cols=10 Identities=20% Similarity=0.265 Sum_probs=6.6
Q ss_pred CEEECCCCEE
Q ss_conf 0133332203
Q gi|254780499|r 75 CVITLEPLLS 84 (167)
Q Consensus 75 C~rcL~pv~~ 84 (167)
|+||-+.|..
T Consensus 2 C~rC~~mF~E 11 (41)
T d1wiga2 2 CVRCGQMFAE 11 (41)
T ss_dssp CSSSCCCCCS
T ss_pred CCHHHCCCCC
T ss_conf 1133153455
No 6
>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}
Probab=5.84 E-value=64 Score=10.80 Aligned_cols=10 Identities=10% Similarity=0.182 Sum_probs=6.7
Q ss_pred ECCEEECCCC
Q ss_conf 1201333322
Q gi|254780499|r 73 QSCVITLEPL 82 (167)
Q Consensus 73 ~~C~rcL~pv 82 (167)
..|+||...|
T Consensus 3 ~~CaRC~k~V 12 (30)
T d1zfoa_ 3 PNCARCGKIV 12 (30)
T ss_dssp CBCSSSCSBC
T ss_pred CCCCCCCCCC
T ss_conf 7432347720
No 7
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=5.77 E-value=54 Score=11.21 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=9.3
Q ss_pred ECCEEECCCCEE
Q ss_conf 120133332203
Q gi|254780499|r 73 QSCVITLEPLLS 84 (167)
Q Consensus 73 ~~C~rcL~pv~~ 84 (167)
..|.+||+++..
T Consensus 6 ~~C~ICl~~~~~ 17 (55)
T d1iyma_ 6 VECAVCLAELED 17 (55)
T ss_dssp CCCTTTCCCCCT
T ss_pred CCCEEECCCCCC
T ss_conf 998497900107
No 8
>d1pbya2 a.3.1.7 (A:86-165) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=5.75 E-value=24 Score=13.12 Aligned_cols=16 Identities=13% Similarity=0.086 Sum_probs=8.5
Q ss_pred EEECCEEECCCCEEEE
Q ss_conf 9812013333220344
Q gi|254780499|r 71 IIQSCVITLEPLLSEV 86 (167)
Q Consensus 71 v~~~C~rcL~pv~~~i 86 (167)
+++.|.||-.--...+
T Consensus 11 ~~~mCaRCHS~aR~aL 26 (80)
T d1pbya2 11 MTQTCGRCHSYARVAL 26 (80)
T ss_dssp HHHHHSSSSCTHHHHT
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999985410578988
No 9
>d1ut1a_ b.2.3.6 (A:) DraA/Afimbrial adhesin Afa-III {Escherichia coli [TaxId: 562]}
Probab=5.39 E-value=72 Score=10.51 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=19.8
Q ss_pred EEEEEEEEEEECCEEECCCCEEEEE
Q ss_conf 9999999998120133332203447
Q gi|254780499|r 63 MSGNLYATIIQSCVITLEPLLSEVE 87 (167)
Q Consensus 63 v~G~i~a~v~~~C~rcL~pv~~~i~ 87 (167)
-+|..+-+|+-+|.+.+..+.....
T Consensus 8 tTGt~~LtVTEeC~V~V~~~t~t~~ 32 (140)
T d1ut1a_ 8 TTGTTKLTVTEKCQVRVGDLTVAKT 32 (140)
T ss_dssp EEEEEEEEEECSSEEEESSCCCEEE
T ss_pred CCCCEEEEEEEEEEEEECCCCCEEE
T ss_conf 6660899981386799756401001
No 10
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.37 E-value=64 Score=10.78 Aligned_cols=14 Identities=7% Similarity=-0.038 Sum_probs=10.1
Q ss_pred ECCEEECCCCEEEE
Q ss_conf 12013333220344
Q gi|254780499|r 73 QSCVITLEPLLSEV 86 (167)
Q Consensus 73 ~~C~rcL~pv~~~i 86 (167)
+.|.+|++.+..++
T Consensus 7 l~C~IC~~~~~~p~ 20 (56)
T d1bora_ 7 LRCQQCQAEAKCPK 20 (56)
T ss_dssp SSCSSSCSSCBCCS
T ss_pred CCCCCCCCCCCCCE
T ss_conf 89840294158978
Done!