RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780499|ref|YP_003064912.1| hypothetical protein
CLIBASIA_01930 [Candidatus Liberibacter asiaticus str. psy62]
         (167 letters)



>gnl|CDD|178323 PLN02721, PLN02721, threonine aldolase.
          Length = 353

 Score = 29.7 bits (67), Expect = 0.37
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 14/62 (22%)

Query: 102 LYPNGDTSGKKNVVVIREPDILPFSEDGVIDIGAVIADFTAIAINP-----YPKKEGITF 156
           LY NG  S    V     P  +  +EDG +D+ A+ A     AI P     +P    I  
Sbjct: 93  LYENGGISTLGGV----HPRTVKNNEDGTMDLDAIEA-----AIRPKGDDHFPTTRLICL 143

Query: 157 SN 158
            N
Sbjct: 144 EN 145


>gnl|CDD|182881 PRK10983, PRK10983, putative inner membrane protein; Provisional.
          Length = 368

 Score = 29.2 bits (66), Expect = 0.52
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 15/56 (26%)

Query: 59  VGVRMSGNLYATI-----IQSCVITLEPLLSEVEDTLGCIFVPSSSKFLYPNGDTS 109
           +G+ +SG  YAT+     I SC++ L PL          + +P+   +LY  GDT+
Sbjct: 231 IGLAISGVPYATLLTVLMILSCLVQLGPLP---------VLIPAII-WLYWTGDTT 276


>gnl|CDD|181029 PRK07560, PRK07560, elongation factor EF-2; Reviewed.
          Length = 731

 Score = 27.1 bits (61), Expect = 2.1
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)

Query: 144 AIN-PYPKKEGITFSNIYD 161
           AI+ P  +K GI F +I D
Sbjct: 209 AISVPMMQKTGIKFKDIID 227


>gnl|CDD|178734 PLN03192, PLN03192, Voltage-dependent potassium channel;
           Provisional.
          Length = 823

 Score = 26.8 bits (59), Expect = 3.2
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 21  MNLKLKADSLDCKKLAEQLGVMSVESWCADVKLSVWKKV 59
           M L+ KA+SL+ ++L +QL     +S C  + L V +KV
Sbjct: 341 MCLRFKAESLNQQQLIDQLPKSICKSICQHLFLPVVEKV 379


>gnl|CDD|162296 TIGR01311, glycerol_kin, glycerol kinase.  This model describes
           glycerol kinase, a member of the FGGY family of
           carbohydrate kinases.
          Length = 493

 Score = 26.0 bits (58), Expect = 4.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 80  EPLLSEVEDTLGCIFVPS 97
           E L   VED  G  FVP+
Sbjct: 327 EALARSVEDNGGVYFVPA 344


>gnl|CDD|183176 PRK11523, PRK11523, DNA-binding transcriptional repressor ExuR;
           Provisional.
          Length = 253

 Score = 26.3 bits (58), Expect = 4.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 33  KKLAEQLGVMSVESWCAD 50
           KKL E +   +V++WC D
Sbjct: 177 KKLHEHIDDRTVDNWCDD 194


>gnl|CDD|185543 PTZ00294, PTZ00294, glycerol kinase-like protein; Provisional.
          Length = 504

 Score = 26.1 bits (58), Expect = 4.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 79  LEPLLSEVEDTLGCIFVPSSSKFLYP 104
           +E L   V+DT G +FVP+ S    P
Sbjct: 333 IEKLARSVKDTGGVVFVPAFSGLFAP 358


>gnl|CDD|129401 TIGR00300, TIGR00300, conserved hypothetical protein TIGR00300.
           All members of the family come from genome projects. A
           partial length search brings in two plant
           lysine-ketoglutarate reductase/saccharopine
           dehydrogenase bifunctional enzymes hitting the
           N-terminal region of the family.
          Length = 407

 Score = 25.9 bits (57), Expect = 5.4
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 107 DTSGKKNVVVIREPDILPFSEDGVIDIGAVIADFTAIAINPYPK 150
           D S  + +V  R+   L      +ID+GAVI +   + +   P+
Sbjct: 45  DPSYARILVSARDHQHLEEILTELIDLGAVIPEIEEVELETAPQ 88


>gnl|CDD|162363 TIGR01444, fkbM_fam, methyltransferase, FkbM family.  Members of
           this family are characterized by two well-conserved
           short regions separated by a variable in both sequence
           and length. The first of the two regions is found in a
           large number of proteins outside this subfamily, a
           number of which have been characterized as
           methyltransferases. One member of the present family,
           FkbM, was shown to be required for a specific
           methylation in the biosynthesis of the immunosuppressant
           FK506 in Streptomyces strain MA6548.
          Length = 143

 Score = 25.7 bits (57), Expect = 6.2
 Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 11/45 (24%)

Query: 130 VIDIGAVIADFTA-----------IAINPYPKKEGITFSNIYDTD 163
           VID+GA I D +            IA  P P    I   N+   +
Sbjct: 2   VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN 46


>gnl|CDD|182684 PRK10734, PRK10734, putative calcium/sodium:proton antiporter;
           Provisional.
          Length = 325

 Score = 25.4 bits (56), Expect = 7.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 122 ILPFSEDGVIDIGAVIADFTAIA 144
           I+P +   VID   V+A++ AI+
Sbjct: 185 IMPMATRMVIDNATVLANYFAIS 207


>gnl|CDD|177437 PHA02614, PHA02614, Major capsid protein VP1; Provisional.
          Length = 363

 Score = 25.3 bits (56), Expect = 7.3
 Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 6/48 (12%)

Query: 5   SNYSYPVSVQAVFSTPMNLKLKADSLDCKKLAEQL--GVMSVESWCAD 50
               YP  V A    P N    A  LD    A+    G   VE WC D
Sbjct: 165 YKTKYPEGVVA----PKNATNTAQVLDPTAKAKLDKDGAYPVECWCPD 208


>gnl|CDD|163526 TIGR03814, Gln_ase, glutaminase A.  This family describes the
          enzyme glutaminase, from a larger family that includes
          serine-dependent beta-lactamases and penicillin-binding
          proteins. Many bacteria have two isozymes. This model
          is based on selected known glutaminases and their
          homologs within prokaryotes, with the exclusion of
          highly-derived (long branch) and architecturally varied
          homologs, so as to achieve conservative assignments. A
          sharp drop in scores occurs below 250, and cutoffs are
          set accordingly. The enzyme converts glutamine to
          glutamate, with the release of ammonia. Members tend to
          be described as glutaminase A (glsA), where B (glsB) is
          unknown and may not be homologous (as in Rhizobium
          etli). Some species have two isozymes that may both be
          designated A (GlsA1 and GlsA2).
          Length = 300

 Score = 25.5 bits (57), Expect = 7.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 55 VWKKVGVRMSGNLYATIIQ 73
          VW++VGV  SG+ + +I+Q
Sbjct: 76 VWERVGVEPSGDPFNSIVQ 94


>gnl|CDD|129581 TIGR00490, aEF-2, translation elongation factor aEF-2.  This model
           represents archaeal elongation factor 2, a protein more
           similar to eukaryotic EF-2 than to bacterial EF-G, both
           in sequence similarity and in sharing with eukaryotes
           the property of having a diphthamide (modified His)
           residue at a conserved position. The diphthamide can be
           ADP-ribosylated by diphtheria toxin in the presence of
           NAD.
          Length = 720

 Score = 25.2 bits (55), Expect = 8.4
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 127 EDGVIDIGAVIADFTAIAINPYPKKEGITFSNIY 160
           EDG +  G+   ++ AI++ P  KK GI F +IY
Sbjct: 194 EDGSVAFGSAYYNW-AISV-PSMKKTGIGFKDIY 225


>gnl|CDD|177932 PLN02295, PLN02295, glycerol kinase.
          Length = 512

 Score = 25.0 bits (55), Expect = 8.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 80  EPLLSEVEDTLGCIFVPSSSKFLYP 104
           E L + V+DT G  FVP+ S    P
Sbjct: 335 EALAATVDDTGGVYFVPAFSGLFAP 359


>gnl|CDD|130351 TIGR01284, alt_nitrog_alph, nitrogenase alpha chain.  This model
           represents the alpha chains of various forms of the
           nitrogen-fixing enzyme nitrogenase: vanadium-iron,
           iron-iron, and molybdenum-iron. Most examples of NifD,
           the molybdenum-iron type nitrogenase alpha chain, are
           excluded from this model and described instead by
           equivalog model TIGR01282. It appears by phylogenetic
           and UPGMA trees that this model represents a distinct
           clade of NifD homologs, in which arose several
           molybdenum-independent forms.
          Length = 457

 Score = 25.2 bits (55), Expect = 9.4
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 86  VEDTLGCIFVPSSSKFLYPNGDTSGKKNV----VVIREPDILPFSEDGVIDIGAVIADFT 141
           +ED LG   V  S+KF + +        V    V+I +P+ L   E  +I+        T
Sbjct: 344 LEDELGMEVVAVSTKFGHEDDYEKIIARVREGTVIIDDPNELELEE--IIEKYKPDIILT 401

Query: 142 AIAINPYPKKEGITFSNIY 160
            I      KK G+ + NI+
Sbjct: 402 GIREGELAKKLGVPYINIH 420


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.317    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0838    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,641,648
Number of extensions: 155483
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 21
Length of query: 167
Length of database: 5,994,473
Length adjustment: 86
Effective length of query: 81
Effective length of database: 4,136,185
Effective search space: 335030985
Effective search space used: 335030985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)