RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780499|ref|YP_003064912.1| hypothetical protein
CLIBASIA_01930 [Candidatus Liberibacter asiaticus str. psy62]
         (167 letters)



>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics,
           joint center for structural genomics, JCSG; 2.15A
           {Methylobacillus flagellatus KT} (A:213-409)
          Length = 197

 Score = 26.4 bits (57), Expect = 2.2
 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 119 EPDILPFSEDGV-IDIGAVIADFTAIAINPYPKKEG 153
              +L FS+    +D GA I +  A  I     K  
Sbjct: 6   RSGLLRFSDSEKXVDCGASIGESLAGLIGVTKGKFE 41


>3bwr_A Capsid protein VP1; SV40, GM1, viral receptor, viral
           attachment, ganglioside, polyomaviruses, late protein,
           nucleus, virion, viral protein; HET: SIA GAL NGA BGC;
           2.25A {Simian virus 40} PDB: 3bwq_A* (A:)
          Length = 272

 Score = 26.3 bits (58), Expect = 2.5
 Identities = 10/45 (22%), Positives = 16/45 (35%)

Query: 6   NYSYPVSVQAVFSTPMNLKLKADSLDCKKLAEQLGVMSVESWCAD 50
           NY      Q V      +  +  + D K + ++     VE W  D
Sbjct: 142 NYRTKYPAQTVTPKNATVDSQQMNTDHKAVLDKDNAYPVECWVPD 186


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 25.9 bits (57), Expect = 3.2
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 17/42 (40%)

Query: 35 LAEQLGVMSVESWCADVKLSVWKKVGVRMSGNLYATIIQSCV 76
          LA+   VMS+ES   +V   V+ + G+ M         Q  V
Sbjct: 2  LAD---VMSIES-LVEV---VFYR-GMTM---------QVAV 26


>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A
           {Thermotoga maritima} (A:1-65,A:173-219)
          Length = 112

 Score = 25.5 bits (56), Expect = 3.5
 Identities = 7/23 (30%), Positives = 10/23 (43%)

Query: 114 VVVIREPDILPFSEDGVIDIGAV 136
              +R  D+  +   GV DIG  
Sbjct: 42  CFXVRPFDVPTYLVHGVADIGFC 64


>1sva_1 Simian virus 40; virus coat protein, icosahedral virus;
           3.10A {Simian virus 40} (1:1-321)
          Length = 321

 Score = 25.5 bits (56), Expect = 4.0
 Identities = 10/45 (22%), Positives = 16/45 (35%)

Query: 6   NYSYPVSVQAVFSTPMNLKLKADSLDCKKLAEQLGVMSVESWCAD 50
           NY      Q V      +  +  + D K + ++     VE W  D
Sbjct: 167 NYRTKYPAQTVTPKNATVDSQQMNTDHKAVLDKDNAYPVECWVPD 211


>1ve4_A ATP phosphoribosyltransferase; riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics; 1.20A {Thermus thermophilus}
           (A:1-91,A:178-206)
          Length = 120

 Score = 25.1 bits (55), Expect = 5.0
 Identities = 7/30 (23%), Positives = 15/30 (50%)

Query: 107 DTSGKKNVVVIREPDILPFSEDGVIDIGAV 136
              G   ++ +R  D+  + + G+ +IG V
Sbjct: 42  GKEGGVALLELRNKDVPIYVDLGIAEIGVV 71


>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain,
           alternative splicing, cell adhesion, disease mutation,
           glycoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB:
           3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* (B:614-690)
          Length = 77

 Score = 24.7 bits (54), Expect = 6.1
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 76  VITLEPLLSEVEDTLGCIFVPSSS---KFLYPNGDTSGKKNVVVIREPD 121
           + +++ L    +D + C +        +F Y   D+SGK  + V+ EP+
Sbjct: 26  IESVKELKDTGKDAVNCTYKNEDDCVVRFQY-YEDSSGKSILYVVEEPE 73


>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine
           biosynthesis, hiszg, allosteric, evolution; 2.90A
           {Lactococcus lactis} (E:1-90,E:178-208)
          Length = 121

 Score = 24.7 bits (54), Expect = 7.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 107 DTSGKKNVVVIREPDILPFSEDGVIDIGAV 136
            T     ++  +  D++ F E G++DIG V
Sbjct: 39  KTKDDLQIIFGKPNDVITFLEHGIVDIGFV 68


>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His
           biosynthesis, PRPP, structural genomics, PSI, protein
           structure initiative; HET: AMP HIS; 1.80A {Mycobacterium
           tuberculosis H37RV} (A:1-106,A:200-231)
          Length = 138

 Score = 24.4 bits (53), Expect = 8.4
 Identities = 6/23 (26%), Positives = 9/23 (39%)

Query: 114 VVVIREPDILPFSEDGVIDIGAV 136
              +R  DI  +   G +D G  
Sbjct: 65  FFFLRPKDIAIYVGSGELDFGIT 87


>1sid_A Polyomavirus coat protein VP1; icosahedral virus; HET: SIA
           GAL BGC; 3.65A {Mouse polyomavirus} (A:1-342)
          Length = 342

 Score = 24.4 bits (53), Expect = 8.5
 Identities = 9/42 (21%), Positives = 18/42 (42%)

Query: 9   YPVSVQAVFSTPMNLKLKADSLDCKKLAEQLGVMSVESWCAD 50
             V+++ +    M  K +  +   K   ++ G+  VE W  D
Sbjct: 189 GVVTIKTITKKDMVNKDQVLNPISKAKLDKDGMYPVEIWHPD 230


>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis,
           glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia
           coli} (A:1-100,A:194-224)
          Length = 131

 Score = 24.3 bits (53), Expect = 9.2
 Identities = 8/30 (26%), Positives = 17/30 (56%)

Query: 107 DTSGKKNVVVIREPDILPFSEDGVIDIGAV 136
             +   +++ +R+ DI     DGV+D+G +
Sbjct: 43  AENMPIDILRVRDDDIPGLVMDGVVDLGII 72


>2vd3_A ATP phosphoribosyltransferase; metal-binding,
           glycosyltransferase, HISG, cytoplasm, histidine,
           magnesium; HET: HIS; 2.45A {Methanobacterium
           thermoautotrophicum} (A:1-90,A:185-213)
          Length = 119

 Score = 24.3 bits (53), Expect = 9.5
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 114 VVVIREPDILPFSEDGVIDIGAV 136
           V+  R  DI  F  DG  D+G  
Sbjct: 49  VMFSRAADIPEFVADGAADLGIT 71


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.317    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,230,282
Number of extensions: 51471
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 15
Length of query: 167
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 85
Effective length of database: 2,184,039
Effective search space: 185643315
Effective search space used: 185643315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)