RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780499|ref|YP_003064912.1| hypothetical protein CLIBASIA_01930 [Candidatus Liberibacter asiaticus str. psy62] (167 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 34.1 bits (78), Expect = 0.015 Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 37/173 (21%) Query: 3 NHSNYSYPVSV-QAVFSTPMNLKLKADSLDCKKLAEQLGVMSVESWCADVKL---SVWKK 58 NH +Y S+ V + P+NL + K++ E M E+ D KL ++K+ Sbjct: 1651 NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFET-IVDGKLKTEKIFKE 1709 Query: 59 VGVRMS--------GNLYAT-IIQSCVITLEPLLSEVEDTLGCIFVPSSSKFLYPNGDTS 109 + + G L AT Q + +E + ED +P+ + F G + Sbjct: 1710 INEHSTSYTFRSEKGLLSATQFTQPALTLMEK--AAFEDLKSKGLIPADATFA---GHSL 1764 Query: 110 GKKNVVVIREPDILPFSEDGVIDI----GAVI-----------ADFTAIAINP 147 G+ + D++ S + ++++ G + +++ IAINP Sbjct: 1765 GEY-AALASLADVM--SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP 1814 Score = 29.5 bits (66), Expect = 0.41 Identities = 5/42 (11%), Positives = 13/42 (30%), Gaps = 8/42 (19%) Query: 66 NLYATIIQSCVITLEPLLSE-VEDTLGCIFVPSSSKFLYPNG 106 Y ++ + LSE + ++ ++ G Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRT-------TLDAEKVFTQG 212 Score = 26.1 bits (57), Expect = 4.6 Identities = 14/87 (16%), Positives = 22/87 (25%), Gaps = 20/87 (22%) Query: 83 LSEVEDTLGCIFVPSS-----SKFLY----------PNGDTSGKKNVVVIREPDILPFSE 127 L E + P++ KFL + E L Sbjct: 41 LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL---- 96 Query: 128 DGVIDIGAVIADFTAIAINPYPKKEGI 154 +G DI A+ A K + + Sbjct: 97 EG-NDIHALAAKLLQENDTTLVKTKEL 122 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 28.8 bits (63), Expect = 0.70 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 6/33 (18%) Query: 14 QAVFSTPMNLKLKADSLDCKKLAEQLGV-MSVE 45 QA+ +LKL AD D A L + ++E Sbjct: 20 QALKKLQASLKLYAD--DS---APALAIKATME 47 >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, joint center for structural genomics, JCSG; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 Length = 409 Score = 27.6 bits (61), Expect = 1.6 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 5/43 (11%) Query: 119 EPDILPFSEDGV-IDIGAVIADFTAIAINPYPKKEGITFSNIY 160 +L FS+ +D GA I + A I K F ++ Sbjct: 218 RSGLLRFSDSEKMVDCGASIGESLAGLIGVTKGK----FERVW 256 >3o0w_A Calreticulin; jelly roll fold, chaperone, carbohydrate binding, calcium BI; HET: MAN GLC; 1.95A {Mus musculus} PDB: 3o0v_A* 3o0x_A* Length = 273 Score = 26.6 bits (58), Expect = 2.7 Identities = 9/66 (13%), Positives = 19/66 (28%), Gaps = 6/66 (9%) Query: 101 FLYPNGDTSGKKNVVVIREPDILPFSEDGVIDIGAVIADFTAIAINPYPKKEGITFSNIY 160 +G + + + P + D F + ++ + K G F N Sbjct: 175 SQVESGSLEDDWDFLPPKGSGSGPDANIYAYD------SFAVLGLDLWQVKSGTIFDNFL 228 Query: 161 DTDQLK 166 T+ Sbjct: 229 ITNDEA 234 >3hlc_A Transesterase, LOVD; alpha/beta hydrolase fold, transferase; HET: PG4; 2.00A {Aspergillus terreus} PDB: 3hld_A* 3hlf_A* 3hle_A* 3hlg_A* 3hlb_A 3hl9_A Length = 432 Score = 26.2 bits (56), Expect = 3.6 Identities = 6/36 (16%), Positives = 11/36 (30%) Query: 110 GKKNVVVIREPDILPFSEDGVIDIGAVIADFTAIAI 145 G + V + P D + + T I + Sbjct: 70 GARTVRRDENNQLPPLQVDTPCRLASATKLLTTIMV 105 >3nxg_A Major capsid protein VP1; beta-sandwich jelly roll, viral protein; 1.95A {Jc polyomavirus} PDB: 3nxd_C 3bwr_A* 3bwq_A* Length = 272 Score = 25.8 bits (56), Expect = 5.1 Identities = 8/46 (17%), Positives = 16/46 (34%) Query: 5 SNYSYPVSVQAVFSTPMNLKLKADSLDCKKLAEQLGVMSVESWCAD 50 NY +F ++ + + + K ++ VE W D Sbjct: 141 FNYRTKYPDGTIFPKNATVQSQVMNTEHKAYLDKNKAYPVECWVPD 186 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 25.5 bits (55), Expect = 6.8 Identities = 11/32 (34%), Positives = 17/32 (53%) Query: 97 SSSKFLYPNGDTSGKKNVVVIREPDILPFSED 128 SS K+ PN + +K +V RE I + E+ Sbjct: 1235 SSVKYASPNLNMKYRKRQLVTREAQIKDWVEN 1266 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.317 0.134 0.393 Gapped Lambda K H 0.267 0.0539 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,411,922 Number of extensions: 60790 Number of successful extensions: 160 Number of sequences better than 10.0: 1 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 11 Length of query: 167 Length of database: 5,693,230 Length adjustment: 85 Effective length of query: 82 Effective length of database: 3,632,490 Effective search space: 297864180 Effective search space used: 297864180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (24.6 bits)