RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780499|ref|YP_003064912.1| hypothetical protein
CLIBASIA_01930 [Candidatus Liberibacter asiaticus str. psy62]
         (167 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl reductase,
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 2006

 Score = 34.1 bits (78), Expect = 0.015
 Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 37/173 (21%)

Query: 3    NHSNYSYPVSV-QAVFSTPMNLKLKADSLDCKKLAEQLGVMSVESWCADVKL---SVWKK 58
            NH   +Y  S+   V + P+NL +       K++ E    M  E+   D KL    ++K+
Sbjct: 1651 NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFET-IVDGKLKTEKIFKE 1709

Query: 59   VGVRMS--------GNLYAT-IIQSCVITLEPLLSEVEDTLGCIFVPSSSKFLYPNGDTS 109
            +    +        G L AT   Q  +  +E   +  ED      +P+ + F    G + 
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQFTQPALTLMEK--AAFEDLKSKGLIPADATFA---GHSL 1764

Query: 110  GKKNVVVIREPDILPFSEDGVIDI----GAVI-----------ADFTAIAINP 147
            G+    +    D++  S + ++++    G  +           +++  IAINP
Sbjct: 1765 GEY-AALASLADVM--SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP 1814



 Score = 29.5 bits (66), Expect = 0.41
 Identities = 5/42 (11%), Positives = 13/42 (30%), Gaps = 8/42 (19%)

Query: 66  NLYATIIQSCVITLEPLLSE-VEDTLGCIFVPSSSKFLYPNG 106
             Y  ++   +      LSE +            ++ ++  G
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRT-------TLDAEKVFTQG 212



 Score = 26.1 bits (57), Expect = 4.6
 Identities = 14/87 (16%), Positives = 22/87 (25%), Gaps = 20/87 (22%)

Query: 83  LSEVEDTLGCIFVPSS-----SKFLY----------PNGDTSGKKNVVVIREPDILPFSE 127
           L E  +       P++      KFL                      +   E   L    
Sbjct: 41  LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL---- 96

Query: 128 DGVIDIGAVIADFTAIAINPYPKKEGI 154
           +G  DI A+ A           K + +
Sbjct: 97  EG-NDIHALAAKLLQENDTTLVKTKEL 122


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.8 bits (63), Expect = 0.70
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 6/33 (18%)

Query: 14 QAVFSTPMNLKLKADSLDCKKLAEQLGV-MSVE 45
          QA+     +LKL AD  D    A  L +  ++E
Sbjct: 20 QALKKLQASLKLYAD--DS---APALAIKATME 47


>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, joint
           center for structural genomics, JCSG; 2.15A
           {Methylobacillus flagellatus KT} SCOP: c.66.1.56
          Length = 409

 Score = 27.6 bits (61), Expect = 1.6
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 5/43 (11%)

Query: 119 EPDILPFSEDGV-IDIGAVIADFTAIAINPYPKKEGITFSNIY 160
              +L FS+    +D GA I +  A  I     K    F  ++
Sbjct: 218 RSGLLRFSDSEKMVDCGASIGESLAGLIGVTKGK----FERVW 256


>3o0w_A Calreticulin; jelly roll fold, chaperone, carbohydrate binding,
           calcium BI; HET: MAN GLC; 1.95A {Mus musculus} PDB:
           3o0v_A* 3o0x_A*
          Length = 273

 Score = 26.6 bits (58), Expect = 2.7
 Identities = 9/66 (13%), Positives = 19/66 (28%), Gaps = 6/66 (9%)

Query: 101 FLYPNGDTSGKKNVVVIREPDILPFSEDGVIDIGAVIADFTAIAINPYPKKEGITFSNIY 160
               +G      + +  +     P +     D       F  + ++ +  K G  F N  
Sbjct: 175 SQVESGSLEDDWDFLPPKGSGSGPDANIYAYD------SFAVLGLDLWQVKSGTIFDNFL 228

Query: 161 DTDQLK 166
            T+   
Sbjct: 229 ITNDEA 234


>3hlc_A Transesterase, LOVD; alpha/beta hydrolase fold, transferase; HET:
           PG4; 2.00A {Aspergillus terreus} PDB: 3hld_A* 3hlf_A*
           3hle_A* 3hlg_A* 3hlb_A 3hl9_A
          Length = 432

 Score = 26.2 bits (56), Expect = 3.6
 Identities = 6/36 (16%), Positives = 11/36 (30%)

Query: 110 GKKNVVVIREPDILPFSEDGVIDIGAVIADFTAIAI 145
           G + V       + P   D    + +     T I +
Sbjct: 70  GARTVRRDENNQLPPLQVDTPCRLASATKLLTTIMV 105


>3nxg_A Major capsid protein VP1; beta-sandwich jelly roll, viral protein;
           1.95A {Jc polyomavirus} PDB: 3nxd_C 3bwr_A* 3bwq_A*
          Length = 272

 Score = 25.8 bits (56), Expect = 5.1
 Identities = 8/46 (17%), Positives = 16/46 (34%)

Query: 5   SNYSYPVSVQAVFSTPMNLKLKADSLDCKKLAEQLGVMSVESWCAD 50
            NY        +F     ++ +  + + K   ++     VE W  D
Sbjct: 141 FNYRTKYPDGTIFPKNATVQSQVMNTEHKAYLDKNKAYPVECWVPD 186


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl
            reductase, beta-ketoacyl synthase, dehydratase; 4.00A
            {Saccharomyces cerevisiae}
          Length = 1688

 Score = 25.5 bits (55), Expect = 6.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 97   SSSKFLYPNGDTSGKKNVVVIREPDILPFSED 128
            SS K+  PN +   +K  +V RE  I  + E+
Sbjct: 1235 SSVKYASPNLNMKYRKRQLVTREAQIKDWVEN 1266


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.317    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0539    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,411,922
Number of extensions: 60790
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 11
Length of query: 167
Length of database: 5,693,230
Length adjustment: 85
Effective length of query: 82
Effective length of database: 3,632,490
Effective search space: 297864180
Effective search space used: 297864180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)