RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780499|ref|YP_003064912.1| hypothetical protein
CLIBASIA_01930 [Candidatus Liberibacter asiaticus str. psy62]
         (167 letters)



>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM
           {Methylobacillus flagellatus [TaxId: 405]}
          Length = 395

 Score = 26.5 bits (58), Expect = 1.3
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 5/43 (11%)

Query: 119 EPDILPFSEDGV-IDIGAVIADFTAIAINPYPKKEGITFSNIY 160
              +L FS+    +D GA I +  A  I     K    F  ++
Sbjct: 204 RSGLLRFSDSEKMVDCGASIGESLAGLIGVTKGK----FERVW 242


>d1vpsa_ b.121.6.1 (A:) Polyomavirus coat proteins {Murine
           polyomavirus, strain small-plaque 16 [TaxId: 10634]}
          Length = 285

 Score = 24.1 bits (52), Expect = 6.6
 Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 6   NYSYPVSVQAVFSTPMNLKLKADSLDCKKLA--EQLGVMSVESWCAD 50
            Y     V     T  ++  K   L+    A  ++ G+  VE W  D
Sbjct: 153 KYKEEGVVTIKTITKKDMVNKDQVLNPISKAKLDKDGMYPVEIWHPD 199


>d1sva1_ b.121.6.1 (1:) Polyomavirus coat proteins {Simian virus 40,
           Sv40 [TaxId: 10633]}
          Length = 348

 Score = 23.7 bits (51), Expect = 8.3
 Identities = 10/45 (22%), Positives = 16/45 (35%)

Query: 6   NYSYPVSVQAVFSTPMNLKLKADSLDCKKLAEQLGVMSVESWCAD 50
           NY      Q V      +  +  + D K + ++     VE W  D
Sbjct: 154 NYRTKYPAQTVTPKNATVDSQQMNTDHKAVLDKDNAYPVECWVPD 198


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0559    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 612,673
Number of extensions: 26626
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 5
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.0 bits)