BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780499|ref|YP_003064912.1| hypothetical protein
CLIBASIA_01930 [Candidatus Liberibacter asiaticus str. psy62]
(167 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780499|ref|YP_003064912.1| hypothetical protein CLIBASIA_01930 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 167
Score = 343 bits (879), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 1 MRNHSNYSYPVSVQAVFSTPMNLKLKADSLDCKKLAEQLGVMSVESWCADVKLSVWKKVG 60
MRNHSNYSYPVSVQAVFSTPMNLKLKADSLDCKKLAEQLGVMSVESWCADVKLSVWKKVG
Sbjct: 1 MRNHSNYSYPVSVQAVFSTPMNLKLKADSLDCKKLAEQLGVMSVESWCADVKLSVWKKVG 60
Query: 61 VRMSGNLYATIIQSCVITLEPLLSEVEDTLGCIFVPSSSKFLYPNGDTSGKKNVVVIREP 120
VRMSGNLYATIIQSCVITLEPLLSEVEDTLGCIFVPSSSKFLYPNGDTSGKKNVVVIREP
Sbjct: 61 VRMSGNLYATIIQSCVITLEPLLSEVEDTLGCIFVPSSSKFLYPNGDTSGKKNVVVIREP 120
Query: 121 DILPFSEDGVIDIGAVIADFTAIAINPYPKKEGITFSNIYDTDQLKN 167
DILPFSEDGVIDIGAVIADFTAIAINPYPKKEGITFSNIYDTDQLKN
Sbjct: 121 DILPFSEDGVIDIGAVIADFTAIAINPYPKKEGITFSNIYDTDQLKN 167
>gi|254780916|ref|YP_003065329.1| putative sigma-54-dependent transcription regulator protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 482
Score = 25.0 bits (53), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 100 KFLYPNGDTSGKKNVVVIREPDILPFSEDGVI 131
KF+ NG T +V+ EPD LP + G I
Sbjct: 228 KFIEANGGT------IVLEEPDALPLAVQGRI 253
>gi|254780323|ref|YP_003064736.1| ATP/ADP translocase [Candidatus Liberibacter asiaticus str. psy62]
Length = 491
Score = 24.6 bits (52), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 108 TSGKKNVVVIREPDILPFSEDGVIDIGAVIADF 140
T G V VI E +LPF+ED + + +A F
Sbjct: 355 TGGGFFVFVIFEDALLPFTEDVIKLVPLALAVF 387
>gi|254780299|ref|YP_003064712.1| acyl-CoA dehydrogenase protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 562
Score = 23.9 bits (50), Expect = 1.4, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 82 LLSEVEDTLGCIFVPSSSKFLYPNG 106
+L++VE +GC VP + PNG
Sbjct: 245 MLAQVEGRVGCFLVPRLLEDGSPNG 269
>gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 443
Score = 23.5 bits (49), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 22 NLKLKADSLDCKKLAEQLGV 41
++K+ D + KK A+QLG+
Sbjct: 109 HIKIMGDKITAKKTAQQLGI 128
>gi|254780186|ref|YP_003064599.1| glutaminase [Candidatus Liberibacter asiaticus str. psy62]
Length = 311
Score = 23.5 bits (49), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 55 VWKKVGVRMSGNLYATIIQ 73
+WK+VG SG+ + +I+Q
Sbjct: 81 IWKRVGREPSGSSFDSIVQ 99
>gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter
asiaticus str. psy62]
Length = 467
Score = 22.3 bits (46), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 100 KFLYPNGDTSGKKNVVVIREPDILPFSEDGVIDIGAVIADFTAIAINPYPKKEGITFSNI 159
K L PNG + K N + IL E +DI ++ + +AI+P K + FSN
Sbjct: 58 KILCPNGTKNVKVNTPIAA---ILQEGETA-LDIDKMLLEKPDVAISPSSKNTTLVFSN- 112
Query: 160 YDTDQLKN 167
D D++ +
Sbjct: 113 EDNDKVDH 120
>gi|254781152|ref|YP_003065565.1| hypothetical protein CLIBASIA_05295 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 155
Score = 21.9 bits (45), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 5 SNYSYPVSVQAVFSTPMNL 23
+NYS PV + + P+NL
Sbjct: 107 NNYSAPVDFEKINPNPLNL 125
>gi|254780297|ref|YP_003064710.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62]
Length = 170
Score = 21.9 bits (45), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 107 DTSGKKNVVVIREPDILPFSED 128
D + +KN +V P I+ FS+D
Sbjct: 65 DHAHRKNPMVFINPKIITFSDD 86
>gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
Length = 803
Score = 21.6 bits (44), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 53 LSVWKKVGVRMSGNLYATIIQSCVITLEPLL---SEVEDT-LGCIFVPSSSKF 101
LS W K+ ++ GN+Y + ++ PL+ S DT F+PSS F
Sbjct: 131 LSSWLKLRIKREGNIYEMSFINGILD-NPLVVTGSAGNDTGTEVTFLPSSDIF 182
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,994
Number of Sequences: 1233
Number of extensions: 4179
Number of successful extensions: 12
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 11
length of query: 167
length of database: 328,796
effective HSP length: 68
effective length of query: 99
effective length of database: 244,952
effective search space: 24250248
effective search space used: 24250248
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)