HHsearch alignment for GI: 254780500 and conserved domain: PRK11251
>PRK11251 DNA-binding transcriptional activator OsmE; Provisional.
Probab=97.48 E-value=0.00043 Score=45.10 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCHHCCC
Q ss_conf 99999999998435554210135003878886404899999999983785212244677530488872100000001012
Q gi|254780500|r 19 KALFIIVIGLVVDYHVSYGSISGASLDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLS 98 (159)
Q Consensus 19 k~i~~~l~~~~~~~c~~~~~~~G~~id~~~i~~i~~g~tk~~V~~~LG~Ps~~~~f~~n~~~~~YYi~~k~~~~~~af~~ 98 (159)
T Consensus 4 ~~l~aaa~~~~LaGCt~~d~~~~~~~-ePlVkdV~~GMT~qqV~~igG~Pss~~~~~~~~GtC~~Yi-----------L~ 71 (109)
T PRK11251 4 GILSAAAVLTMLAGCTAYDRNPVQYV-EPVVKDVKKGMTRQQVLQIGGKPSSEVSMIHARGTCQTYI-----------LG 71 (109)
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHC-CHHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCCCCCEEE-----------EE
T ss_conf 58899999999971447767813431-5069888747579999985499864178860785220037-----------32
Q ss_pred CEEEEEEEEEEEECCCCCEEEEEECCCC
Q ss_conf 1111357899999899868432110434
Q gi|254780500|r 99 PKIMEYIVLKITFGEKGVVSSVSMERLP 126 (159)
Q Consensus 99 pkvier~Vl~I~FD~~g~V~nI~~~~L~ 126 (159)
T Consensus 72 ~~dGk~q~YfVsfD~tG~V~~~GF~TC~ 99 (109)
T PRK11251 72 NRDGKAQTYFVSFDDTGHVDNSGFQTCA 99 (109)
T ss_pred CCCCCEEEEEEEECCCCCCCCCCHHHHH
T ss_conf 4689615579997789858351220588