HHsearch alignment for GI: 254780500 and conserved domain: pfam04355
>pfam04355 SmpA_OmlA SmpA / OmlA family. Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in maintaining the structural integrity of the cell envelope. Lipid attachment site is a conserved N terminal cysteine residue. Sometimes found adjacent to the OmpA domain (pfam00691).
Probab=99.62 E-value=1.8e-15 Score=113.52 Aligned_cols=71 Identities=24% Similarity=0.408 Sum_probs=62.0
Q ss_pred CCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCHHCCCCEEEEEEEEEEEECCCCCEEEE
Q ss_conf 50038788864048999999999837852122446775304888721000000010121111357899999899868432
Q gi|254780500|r 41 GASLDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVSSV 120 (159)
Q Consensus 41 G~~id~~~i~~i~~g~tk~~V~~~LG~Ps~~~~f~~n~~~~~YYi~~k~~~~~~af~~pkvier~Vl~I~FD~~g~V~nI 120 (159)
T Consensus 1 Gn~~~~~~l~~l~~Gmtk~QV~~lLGtP~~~~~f~~~~W---~Yi~~~~~-------~~~~~~~~~l~v~Fd~~~~v~~~ 70 (71)
T pfam04355 1 GNYVTQEDVDQLKPGMTKEQVRYLLGTPSLEDTFGPNTW---YYVYNFRR-------GGGAVEQQVLAVYFDDDGLVRNI 70 (71)
T ss_pred CCCCCHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCE---EEEEEEEE-------CCCCEEEEEEEEEECCCCEEEEC
T ss_conf 972899999751799999999987089621177678617---99999972-------89825999999998399788621
Q ss_pred E
Q ss_conf 1
Q gi|254780500|r 121 S 121 (159)
Q Consensus 121 ~ 121 (159)
T Consensus 71 ~ 71 (71)
T pfam04355 71 G 71 (71)
T ss_pred C
T ss_conf 9