Query         gi|254780500|ref|YP_003064913.1| hypothetical protein CLIBASIA_01935 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 159
No_of_seqs    128 out of 302
Neff          5.3 
Searched_HMMs 33803
Date          Wed Jun  1 17:00:39 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780500.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2pxg_A Outer membrane protein  99.8 2.1E-19 6.3E-24  136.8   6.4  108   30-146     1-111 (118)
  2 >3d4e_A Putative beta-lactamas  97.7 5.7E-05 1.7E-09   50.0   5.4   71   41-120   103-174 (179)
  3 >3gmv_X Beta-lactamase inhibit  97.6 0.00013 3.8E-09   47.9   5.8   96   44-154     3-102 (156)
  4 >3gmv_X Beta-lactamase inhibit  96.0  0.0093 2.7E-07   36.7   4.5   76   43-125    78-155 (156)
  5 >3gmx_B BLP; 2-layer alpha/bet  95.6  0.0049 1.5E-07   38.4   1.7   34   44-77      4-37  (154)
  6 >2g2u_B BLIP, beta-lactamase i  94.9   0.031 9.1E-07   33.6   4.0   30   43-72      3-32  (165)
  7 >3d4e_A Putative beta-lactamas  93.1   0.066 1.9E-06   31.6   2.7   42   45-86     33-74  (179)
  8 >3gmx_B BLP; 2-layer alpha/bet  92.5    0.38 1.1E-05   27.0   6.0   72   43-126    76-154 (154)
  9 >2v26_A Myosin VI; calmodulin-  41.4      25 0.00074   16.1   3.5   50   59-132   102-153 (195)
 10 >1wlg_A Flagellar HOOK protein  28.7      41  0.0012   14.8   2.8   60   60-127    53-116 (157)
 11 >3a69_A Flagellar HOOK protein  27.2      43  0.0013   14.6   2.7   60   60-127    52-115 (153)
 12 >1br2_A Myosin; muscle protein  26.4      45  0.0013   14.6   3.5   52   57-132   147-200 (324)
 13 >1ojj_A Endoglucanase I; hydro  22.3      54  0.0016   14.1   3.7   32  106-137   267-300 (402)
 14 >2ovw_A Endoglucanase I; glyco  21.5      56  0.0016   14.0   3.7   31  107-137   268-300 (411)

No 1  
>>2pxg_A Outer membrane protein; two layer alpha/beta plait, two layer sandwich architecture; NMR {Xanthomonas axonopodis PV} (A:)
Probab=99.78  E-value=2.1e-19  Score=136.84  Aligned_cols=108  Identities=16%  Similarity=0.090  Sum_probs=90.8

Q ss_pred             HCCCCCC---CEECCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCHHCCCCEEEEEEE
Q ss_conf             4355542---1013500387888640489999999998378521224467753048887210000000101211113578
Q gi|254780500|r   30 VDYHVSY---GSISGASLDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIV  106 (159)
Q Consensus        30 ~~~c~~~---~~~~G~~id~~~i~~i~~g~tk~~V~~~LG~Ps~~~~f~~n~~~~~YYi~~k~~~~~~af~~pkvier~V  106 (159)
                      |++|...   ...|||.++++++++|++||||+||..+||+|++.+.|++++   |||+.+...      ..+++.++++
T Consensus         1 Ls~Cs~~y~~~~~qG~~~~~~~l~~i~~Gmtk~qV~~lLGtP~~~~~f~~~~---W~Yv~~~~~------~~~~~~~~~~   71 (118)
T 2pxg_A            1 MAGSGIIYKQPIYQGNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDPFHAQR---WDYTSTQRV------DRLARTEIKN   71 (118)
T ss_dssp             CCCCCCCCCCCCCTTSTTTSSSTTTTCCCSCHHHHHHHHTSCCCCCTTTCCC---EEEEEEETT------CSSSSCEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCE---EEEEEEEEC------CCCCEEEEEE
T ss_conf             9755650146567677489999976058999999999848986337757861---799999964------8985258999


Q ss_pred             EEEEECCCCCEEEEEECCCCCCCEECCCCCCCCCCCCHHH
Q ss_conf             9999989986843211043456140345415888852243
Q gi|254780500|r  107 LKITFGEKGVVSSVSMERLPNRRFNPNPHTIPAPIQTADG  146 (159)
Q Consensus       107 l~I~FD~~g~V~nI~~~~L~dg~~~~~~~~~~~~~~~~~~  146 (159)
                      ++|+||++++|+....+.+++++.++..++.|..+.....
T Consensus        72 i~v~Fd~~~~v~~~~~~~~~~~~~i~~~~~~tp~~~~~~~  111 (118)
T 2pxg_A           72 FTVFFENEQVVRWEGDYFPSQDEQLAKAAPKQFGRNLARD  111 (118)
T ss_dssp             EEEEESSSSEEEEEECSSSCCCCCSSCSSCCCCSCCCSCC
T ss_pred             EEEEECCCCEEEEECCCCCCCHHHHHHCCHHHHHCCCCHH
T ss_conf             9999899989988788788712443011402210214123


No 2  
>>3d4e_A Putative beta-lactamase inhibitor protein; NP_721579.1, structural genomics, joint center for structural genomics, JCSG; 1.40A {Streptococcus mutans} (A:)
Probab=97.73  E-value=5.7e-05  Score=50.02  Aligned_cols=71  Identities=13%  Similarity=0.134  Sum_probs=48.7

Q ss_pred             CCCCCHHHHHHHCCCCCHHHHHHHHCCCCCC-CCCCCCCCCEEEEEEEEEECCCHHCCCCEEEEEEEEEEEECCCCCEEE
Q ss_conf             5003878886404899999999983785212-244677530488872100000001012111135789999989986843
Q gi|254780500|r   41 GASLDMSAISLVSQGSSRSHVIESLGSPSFS-ILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVSS  119 (159)
Q Consensus        41 G~~id~~~i~~i~~g~tk~~V~~~LG~Ps~~-~~f~~n~~~~~YYi~~k~~~~~~af~~pkvier~Vl~I~FD~~g~V~n  119 (159)
                      -..++.+..++|++|||++||..+||+|... ..+..+.|.+-|....         ...-+-+...+.|+||+.+++.-
T Consensus       103 ~q~lt~~~f~~i~~Gmt~~eV~~~lG~P~~~s~~~~~~~~~~v~~w~~---------~~~g~~~~~~~~v~F~~~~vv~k  173 (179)
T 3d4e_A          103 EAKIGKEDYDELKIGESYKKIVEKLGEPDVLSQSXSSDKEEXQTVWSS---------GIKTKSSSATIELYFENGLLKNK  173 (179)
T ss_dssp             CCCBCHHHHHHCCTTCBHHHHHHHHCCCSEEEEEECSSCEEEEEEECS---------SBCSSCTTCEEEEEEETTEEEEE
T ss_pred             CCCCCHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCCEEEEEEEC---------CCCCCCCCCEEEEEEECCEEEEE
T ss_conf             653499999740689989999998379973467631885136999832---------76778887369999969928882


Q ss_pred             E
Q ss_conf             2
Q gi|254780500|r  120 V  120 (159)
Q Consensus       120 I  120 (159)
                      -
T Consensus       174 t  174 (179)
T 3d4e_A          174 T  174 (179)
T ss_dssp             E
T ss_pred             H
T ss_conf             0


No 3  
>>3gmv_X Beta-lactamase inhibitory protein BLIP-I; 2-layer alpha/beta sandwich, protein binding; HET: TAM; 1.80A {Streptomyces exfoliatus} PDB: 3gmw_B (X:)
Probab=97.61  E-value=0.00013  Score=47.91  Aligned_cols=96  Identities=11%  Similarity=0.008  Sum_probs=66.1

Q ss_pred             CCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCHHCCCCEEEEEEEEEEEECCCCCEEEEEEC
Q ss_conf             38788864048999999999837852122446775304888721000000010121111357899999899868432110
Q gi|254780500|r   44 LDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVSSVSME  123 (159)
Q Consensus        44 id~~~i~~i~~g~tk~~V~~~LG~Ps~~~~f~~n~~~~~YYi~~k~~~~~~af~~pkvier~Vl~I~FD~~g~V~nI~~~  123 (159)
                      +..+..++|++|||.+||.++||.|...+.+..+....|+|..+..             ...-..+.|+++|.|......
T Consensus         3 it~enf~kIk~Gmt~~eV~~ilG~p~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~ngkv~~k~~~   69 (156)
T 3gmv_X            3 FSAEKYEQIQFGMTFDEVWEIGGGEAACDTGGVIGDSILCFTESGD-------------YAPYGGFSFTDEGELWSKRNE   69 (156)
T ss_dssp             CCHHHHHHCCTTCBHHHHHHHHTHHHHEECSGGGTTSEEEESSSST-------------TCCEEEEEECTTSBEEEEEEE
T ss_pred             CCHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCC-------------CCCEEEEEECCCCEEEEEEEC
T ss_conf             4778763101378799999985898766536778605789885489-------------974799998269758763002


Q ss_pred             CCCCCCEECCC----CCCCCCCCCHHHHHHHHHCC
Q ss_conf             43456140345----41588885224389998533
Q gi|254780500|r  124 RLPNRRFNPNP----HTIPAPIQTADGFLRRLLNP  154 (159)
Q Consensus       124 ~L~dg~~~~~~----~~~~~~~~~~~~fl~~l~~~  154 (159)
                      +|+.++.-.++    .++..+-.-+  =.++++|.
T Consensus        70 gl~~~~~~~it~~~f~~i~~Gmty~--eV~~~lG~  102 (156)
T 3gmv_X           70 YLYKAKTPSVKLSHYNRTALGMTEA--QLWAAVPK  102 (156)
T ss_dssp             SSSCCSSCCCCHHHHTTCCTTCBHH--HHHHHSCG
T ss_pred             CCCCCCCCCCCHHHHHHHHCCCCHH--HHHHHHCC
T ss_conf             4335887635799975450488599--99987189


No 4  
>>3gmv_X Beta-lactamase inhibitory protein BLIP-I; 2-layer alpha/beta sandwich, protein binding; HET: TAM; 1.80A {Streptomyces exfoliatus} PDB: 3gmw_B (X:)
Probab=96.03  E-value=0.0093  Score=36.71  Aligned_cols=76  Identities=11%  Similarity=-0.008  Sum_probs=47.3

Q ss_pred             CCCHHHHHHHCCCCCHHHHHHHHCCCC--CCCCCCCCCCCEEEEEEEEEECCCHHCCCCEEEEEEEEEEEECCCCCEEEE
Q ss_conf             038788864048999999999837852--122446775304888721000000010121111357899999899868432
Q gi|254780500|r   43 SLDMSAISLVSQGSSRSHVIESLGSPS--FSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVSSV  120 (159)
Q Consensus        43 ~id~~~i~~i~~g~tk~~V~~~LG~Ps--~~~~f~~n~~~~~YYi~~k~~~~~~af~~pkvier~Vl~I~FD~~g~V~nI  120 (159)
                      .+..+..++|+.|||.+||.++||.|.  ....+.++....|-+.++...+     .. .--+.-.+-|+|.+ |.|.+.
T Consensus        78 ~it~~~f~~i~~Gmty~eV~~~lG~~~~~~~~~~~~~~~~~~~~~~~iy~w-----~~-~~~~~~~~~v~F~d-gkv~~k  150 (156)
T 3gmv_X           78 SVKLSHYNRTALGMTEAQLWAAVPKDSCVSQGESYPNWPAKTGFEEKYYCA-----AA-TGLFPPSASFHLTD-GVLTYR  150 (156)
T ss_dssp             CCCHHHHTTCCTTCBHHHHHHHSCGGGEEEEEEECTTTTSCTTCEEEEEEE-----SS-SSSSCCEEEEEEET-TEEEEE
T ss_pred             CCCHHHHHHHHCCCCHHHHHHHHCCCCCEECCCCCCCCCCCCCEEEEEEEC-----CC-CCCCCCEEEEEEEC-CCEEEE
T ss_conf             357999754504885999998718997310001344556677606899972-----54-67758627999858-816353


Q ss_pred             EECCC
Q ss_conf             11043
Q gi|254780500|r  121 SMERL  125 (159)
Q Consensus       121 ~~~~L  125 (159)
                      +..+|
T Consensus       151 sq~~L  155 (156)
T 3gmv_X          151 YQRSL  155 (156)
T ss_dssp             EEESC
T ss_pred             EECCC
T ss_conf             10167


No 5  
>>3gmx_B BLP; 2-layer alpha/beta sandwich, protein binding; 1.05A {Streptomyces clavuligerus} PDB: 3gmy_A (B:)
Probab=95.63  E-value=0.0049  Score=38.37  Aligned_cols=34  Identities=12%  Similarity=0.053  Sum_probs=28.6

Q ss_pred             CCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf             3878886404899999999983785212244677
Q gi|254780500|r   44 LDMSAISLVSQGSSRSHVIESLGSPSFSILHNGN   77 (159)
Q Consensus        44 id~~~i~~i~~g~tk~~V~~~LG~Ps~~~~f~~n   77 (159)
                      +..+..++|+.|||.+||.++||.|+-.+.....
T Consensus         4 it~e~y~kIk~GMt~~eV~~ilG~~~~~~~~~~~   37 (154)
T 3gmx_B            4 FTPERYNKIQFGMDRTLVWQLAGADQSCSDQVER   37 (154)
T ss_dssp             CCHHHHHHCCTTCBHHHHHHHHTHHHHEEECSSC
T ss_pred             CCHHHHCCCHHCCCHHHHHHHHCCHHHCCCCCCE
T ss_conf             6877730121044599999862622002456655


No 6  
>>2g2u_B BLIP, beta-lactamase inhibitory protein; protein-protein complex, SHV-1, hydrolase/hydrolase inhibitor complex; 1.60A {Streptomyces clavuligerus} (B:)
Probab=94.92  E-value=0.031  Score=33.59  Aligned_cols=30  Identities=13%  Similarity=0.293  Sum_probs=25.3

Q ss_pred             CCCHHHHHHHCCCCCHHHHHHHHCCCCCCC
Q ss_conf             038788864048999999999837852122
Q gi|254780500|r   43 SLDMSAISLVSQGSSRSHVIESLGSPSFSI   72 (159)
Q Consensus        43 ~id~~~i~~i~~g~tk~~V~~~LG~Ps~~~   72 (159)
                      -++.+..++|+.|||.++|.++||.|...+
T Consensus         3 kit~e~y~kIk~GMty~eV~~ilG~e~~~s   32 (165)
T 2g2u_B            3 VMTGAKFTQIQFGMTRQQVLDIAGAENCET   32 (165)
T ss_dssp             SCCHHHHHHSCTTCBHHHHHHHHCGGGEEC
T ss_pred             CCCHHHHHCCCCCCCHHHHHHHHCCCCCCC
T ss_conf             047888614037898999999868986556


No 7  
>>3d4e_A Putative beta-lactamase inhibitor protein; NP_721579.1, structural genomics, joint center for structural genomics, JCSG; 1.40A {Streptococcus mutans} (A:)
Probab=93.07  E-value=0.066  Score=31.61  Aligned_cols=42  Identities=19%  Similarity=0.125  Sum_probs=29.3

Q ss_pred             CHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             878886404899999999983785212244677530488872
Q gi|254780500|r   45 DMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVS   86 (159)
Q Consensus        45 d~~~i~~i~~g~tk~~V~~~LG~Ps~~~~f~~n~~~~~YYi~   86 (159)
                      ..+...++++|||.++|.++||+|..+.....+.-..|-|..
T Consensus        33 ~~~~~~~~k~Gst~~eV~~~~G~P~~~~~~~~~g~~~~~Y~w   74 (179)
T 3d4e_A           33 VTTDQNHFSGGTSIEQLKQWFGDPNKSEQRNAGNITLDSYTW   74 (179)
T ss_dssp             CCCCTTTCCSSCCHHHHHHHHCSCSEEEEEEETTEEEEEEEE
T ss_pred             EEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEE
T ss_conf             631122688877899999985898641013679878898752


No 8  
>>3gmx_B BLP; 2-layer alpha/beta sandwich, protein binding; 1.05A {Streptomyces clavuligerus} PDB: 3gmy_A (B:)
Probab=92.51  E-value=0.38  Score=26.99  Aligned_cols=72  Identities=19%  Similarity=0.227  Sum_probs=46.5

Q ss_pred             CCCHHHHHHHCCCCCHHHHHHHHCCCCCCCCC-------CCCCCCEEEEEEEEEECCCHHCCCCEEEEEEEEEEEECCCC
Q ss_conf             03878886404899999999983785212244-------67753048887210000000101211113578999998998
Q gi|254780500|r   43 SLDMSAISLVSQGSSRSHVIESLGSPSFSILH-------NGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKG  115 (159)
Q Consensus        43 ~id~~~i~~i~~g~tk~~V~~~LG~Ps~~~~f-------~~n~~~~~YYi~~k~~~~~~af~~pkvier~Vl~I~FD~~g  115 (159)
                      -++.+..++|+.|||-+||.++||.|...+.-       ....|...+|.-.....           ..--+.++|. +|
T Consensus        76 ~it~~~y~~i~~GmTY~eV~~ilG~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~~~-----------~g~~~~~tF~-ng  143 (154)
T 3gmx_B           76 TMRLATYNKTQTGMTEAQFWAAVPSDTCSALAEQYPNWPATNGNLREYVCPSKAER-----------FAPSAYFTFT-DG  143 (154)
T ss_dssp             CCCHHHHTTCCTTCBHHHHHHHSCGGGCEEEEEECTTTTSCTTCEEEEEEESSSST-----------TCCEEEEEEE-TT
T ss_pred             CEEEECCCCEECCCCHHHHHHHCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCC-----------CCCCEEEEEE-CC
T ss_conf             12701113100142286753226775144556537788544685357861220265-----------5771389984-46


Q ss_pred             CEEEEEECCCC
Q ss_conf             68432110434
Q gi|254780500|r  116 VVSSVSMERLP  126 (159)
Q Consensus       116 ~V~nI~~~~L~  126 (159)
                      .|.+.+..+|+
T Consensus       144 klt~K~q~gL~  154 (154)
T 3gmx_B          144 KLTSRSQSQLP  154 (154)
T ss_dssp             EEEEEEESSCC
T ss_pred             EEEEEEECCCC
T ss_conf             58740003688


No 9  
>>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 2vb6_A* 2vas_A* (A:81-241,A:442-459,A:657-672)
Probab=41.39  E-value=25  Score=16.06  Aligned_cols=50  Identities=28%  Similarity=0.306  Sum_probs=33.6

Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCHHCCCCEEEEEEEEEEEECCCCCEE--EEEECCCCCCCEEC
Q ss_conf             999998378521224467753048887210000000101211113578999998998684--32110434561403
Q gi|254780500|r   59 SHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVS--SVSMERLPNRRFNP  132 (159)
Q Consensus        59 ~~V~~~LG~Ps~~~~f~~n~~~~~YYi~~k~~~~~~af~~pkvier~Vl~I~FD~~g~V~--nI~~~~L~dg~~~~  132 (159)
                      +.|++.+|...+.  .|+|        ++|.              -+.+.|.||+.|.+.  .|..|.||.-|++.
T Consensus       102 ~~ILEAFGNAkT~--~N~N--------SSRf--------------Gk~~~L~Fd~~g~I~Ga~I~~yLLEKSRVv~  153 (195)
T 2v26_A          102 NPLLEAFGNAKTV--RNNN--------SSRF--------------GKFVEIHFNEKSSVVGGFVSHYLLEKSRICV  153 (195)
T ss_dssp             HHHHHHHHEECCS--SCTT--------EECS--------------EEEEEEEECTTSCEEEEEEEEECCCCGGGTC
T ss_pred             HHHHHHHCCCCCC--CCCC--------CCCH--------------HHEEEEEECCCCCEEEEEEEECCCCCCEEEE
T ss_conf             8999985377889--9987--------1361--------------2166789868996745799831566714662


No 10 
>>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} (A:62-218)
Probab=28.67  E-value=41  Score=14.80  Aligned_cols=60  Identities=15%  Similarity=0.145  Sum_probs=34.9

Q ss_pred             HHHHHHCCCCCCCC----CCCCCCCEEEEEEEEEECCCHHCCCCEEEEEEEEEEEECCCCCEEEEEECCCCC
Q ss_conf             99998378521224----467753048887210000000101211113578999998998684321104345
Q gi|254780500|r   60 HVIESLGSPSFSIL----HNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVSSVSMERLPN  127 (159)
Q Consensus        60 ~V~~~LG~Ps~~~~----f~~n~~~~~YYi~~k~~~~~~af~~pkvier~Vl~I~FD~~g~V~nI~~~~L~d  127 (159)
                      .|..-||.|.....    -.+|.|++++++.....        .....----.+.||..|.+.+.....+.-
T Consensus        53 tvyDSlG~~h~v~~~f~k~~~n~W~~~~~~~~~~~--------~~~~~~~~gtl~Fd~~G~l~~~~~~~~~~  116 (157)
T 1wlg_A           53 TVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPA--------ATAPTTASTTLKFNENGILESGGTVNITT  116 (157)
T ss_dssp             EEECTTCCEEEEEEEEEEEETTEEEEEEEETTCTT--------CCCCCSCSEEEEECTTSBEEECCEEEEEC
T ss_pred             EEECCCCCCCCCEEEEEECCCCCCCEEECCCCCCC--------CCCCCCCEEEEEECCCCCCCCCCCEECCC
T ss_conf             63113786311003322115643303650356655--------55764420257505675213454100023


No 11 
>>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp} (A:133-285)
Probab=27.21  E-value=43  Score=14.65  Aligned_cols=60  Identities=15%  Similarity=0.145  Sum_probs=34.0

Q ss_pred             HHHHHHCCCCCCCC----CCCCCCCEEEEEEEEEECCCHHCCCCEEEEEEEEEEEECCCCCEEEEEECCCCC
Q ss_conf             99998378521224----467753048887210000000101211113578999998998684321104345
Q gi|254780500|r   60 HVIESLGSPSFSIL----HNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVSSVSMERLPN  127 (159)
Q Consensus        60 ~V~~~LG~Ps~~~~----f~~n~~~~~YYi~~k~~~~~~af~~pkvier~Vl~I~FD~~g~V~nI~~~~L~d  127 (159)
                      .|..-||.++.-..    -.+|.|++.+++.....        ..-.--.--.|+||..|.+.+..-..+.-
T Consensus        52 tvYDSlG~~h~l~~~f~k~~~n~W~~~~~~~~~~~--------~~~~~~~~~ti~Fd~~G~l~~~~~~~~~~  115 (153)
T 3a69_A           52 TVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPA--------ATAPTTASTTLKFNENGILESGGTVNITT  115 (153)
T ss_dssp             EEECTTCCEEEEEEEEEEEETTEEEEEEEETTCTT--------CCCCCSCSEEEEECTTSBEEECCEEEEEC
T ss_pred             EEECCCCCEEEEEEEEEEEECCCCEEEEECCCCCC--------CCCCCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf             99837896046555777620243215640345545--------55554442047504554324555311234


No 12 
>>1br2_A Myosin; muscle protein; HET: ADP; 2.90A {Gallus gallus} (A:79-279,A:454-532,A:676-719)
Probab=26.39  E-value=45  Score=14.56  Aligned_cols=52  Identities=19%  Similarity=0.291  Sum_probs=38.1

Q ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCHHCCCCEEEEEEEEEEEECCCCCEE--EEEECCCCCCCEEC
Q ss_conf             99999998378521224467753048887210000000101211113578999998998684--32110434561403
Q gi|254780500|r   57 SRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVS--SVSMERLPNRRFNP  132 (159)
Q Consensus        57 tk~~V~~~LG~Ps~~~~f~~n~~~~~YYi~~k~~~~~~af~~pkvier~Vl~I~FD~~g~V~--nI~~~~L~dg~~~~  132 (159)
                      .-+.|++.+|...|.  .|+|        ++|.              -+.+.+.||++|.+.  .+..|.||--|++-
T Consensus       147 ~~n~iLEAFGNAkT~--~N~N--------SSRf--------------Gk~~~l~f~~~g~i~Ga~i~~ylLEksRVv~  200 (324)
T 1br2_A          147 QANPILEAFGNAKTV--KNDN--------SSRF--------------GKFIRINFDVTGYIVGANIETYLLEKSRAIR  200 (324)
T ss_dssp             THHHHHHHHHEECCS--SCTT--------EESS--------------EEEEEEEECTTSCEEEEEEEEECCCGGGGTC
T ss_pred             HHHHHHHHCCCCCCC--CCCC--------CCCC--------------CEEEEEEECCCCCEEEEEEEEEECCCCEEEE
T ss_conf             874599871887667--7998--------5772--------------0001157658895767799973135743565


No 13 
>>1ojj_A Endoglucanase I; hydrolase, cellulose degradation, glycosynthase; HET: BGC GAL GLC NAG; 1.4A {Humicola insolens} (A:)
Probab=22.30  E-value=54  Score=14.08  Aligned_cols=32  Identities=9%  Similarity=0.100  Sum_probs=25.9

Q ss_pred             EEEEEE--CCCCCEEEEEECCCCCCCEECCCCCC
Q ss_conf             899999--89986843211043456140345415
Q gi|254780500|r  106 VLKITF--GEKGVVSSVSMERLPNRRFNPNPHTI  137 (159)
Q Consensus       106 Vl~I~F--D~~g~V~nI~~~~L~dg~~~~~~~~~  137 (159)
                      -++-.|  |+.|.|+.|.|+=.+||++++.+...
T Consensus       267 TVVTQF~~~~~G~L~eIrR~YVQ~GkvI~n~~~~  300 (402)
T 1ojj_A          267 TVVTQFLANRRGKLEKIHRFYVQDGKVIESFYTN  300 (402)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEETTEEECCCCCC
T ss_pred             EEEEEEECCCCCCEEEEEEEEEECCEEECCCCCC
T ss_conf             9999887389987105569986799993388655


No 14 
>>2ovw_A Endoglucanase I; glycosyl hydrolase, complexed with cellobiose, glycosylated protein; HET: NAG CBI; 2.30A {Fusarium oxysporum} (A:)
Probab=21.53  E-value=56  Score=13.99  Aligned_cols=31  Identities=6%  Similarity=0.148  Sum_probs=25.6

Q ss_pred             EEEEE--CCCCCEEEEEECCCCCCCEECCCCCC
Q ss_conf             99999--89986843211043456140345415
Q gi|254780500|r  107 LKITF--GEKGVVSSVSMERLPNRRFNPNPHTI  137 (159)
Q Consensus       107 l~I~F--D~~g~V~nI~~~~L~dg~~~~~~~~~  137 (159)
                      ++-.|  |+.|.|+.|.|+=.+||++++.+...
T Consensus       268 VVTQF~t~~~G~L~eIrR~YVQ~GkvI~n~~~~  300 (411)
T 2ovw_A          268 VTSQFVANKQGDLIELHRHYIQDNKVIESAVVN  300 (411)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEETTEEEECCCCC
T ss_pred             EEEEEEECCCCCEEEEEEEEEECCEEECCCCCC
T ss_conf             997887089854689989996399995688756


Done!