Query gi|254780500|ref|YP_003064913.1| hypothetical protein CLIBASIA_01935 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 159
No_of_seqs 128 out of 302
Neff 5.3
Searched_HMMs 13730
Date Wed Jun 1 09:59:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780500.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3ckma1 c.93.1.1 (A:257-573) Y 55.9 4 0.00029 18.5 2.8 26 108-133 291-317 (317)
2 d2g2ub1 d.98.1.1 (B:1-165) bet 37.2 11 0.00084 15.8 2.7 26 43-68 3-28 (165)
3 d1bcoa1 b.48.1.1 (A:481-560) m 18.0 25 0.0018 13.8 1.6 27 105-132 49-75 (80)
4 d1uw4a_ d.58.7.4 (A:) RNA proc 16.7 29 0.0021 13.3 3.6 52 50-117 7-58 (91)
5 d1kk8a2 c.37.1.9 (A:1-28,A:77- 15.0 32 0.0023 13.1 3.2 65 59-154 175-243 (789)
6 d1ojja_ b.29.1.10 (A:) Cellobi 12.4 38 0.0028 12.6 3.5 29 107-135 268-298 (399)
7 d1br2a2 c.37.1.9 (A:80-789) My 10.6 44 0.0032 12.3 3.5 67 57-154 147-217 (710)
8 d1ijwc_ a.4.1.2 (C:) HIN recom 10.5 44 0.0032 12.2 2.5 24 47-70 13-36 (47)
9 d2mysa2 c.37.1.9 (A:4-33,A:80- 8.8 51 0.0037 11.8 3.3 68 58-154 176-245 (794)
10 d3ovwa_ b.29.1.10 (A:) Cellobi 8.7 52 0.0038 11.8 2.5 26 112-137 275-300 (400)
No 1
>d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=55.93 E-value=4 Score=18.48 Aligned_cols=26 Identities=8% Similarity=0.081 Sum_probs=18.2
Q ss_pred EEEECCCCCEE-EEEECCCCCCCEECC
Q ss_conf 99998998684-321104345614034
Q gi|254780500|r 108 KITFGEKGVVS-SVSMERLPNRRFNPN 133 (159)
Q Consensus 108 ~I~FD~~g~V~-nI~~~~L~dg~~~~~ 133 (159)
.++||++|.+. ....+..+||+++|+
T Consensus 291 ~~~fd~~G~~~r~~~~~~~~~G~~vp~ 317 (317)
T d3ckma1 291 ILSADTNCNVERDMTWYQYQDGAIVPV 317 (317)
T ss_dssp EEEECTTCBEEEECEEEEEETTEEEEC
T ss_pred EEEECCCCCEEECCEEEEEECCEEEEC
T ss_conf 899999998822416999989999689
No 2
>d2g2ub1 d.98.1.1 (B:1-165) beta-lactamase-inhibitor protein, BLIP {Streptomyces clavuligerus [TaxId: 1901]}
Probab=37.15 E-value=11 Score=15.76 Aligned_cols=26 Identities=15% Similarity=0.341 Sum_probs=22.6
Q ss_pred CCCHHHHHHHCCCCCHHHHHHHHCCC
Q ss_conf 03878886404899999999983785
Q gi|254780500|r 43 SLDMSAISLVSQGSSRSHVIESLGSP 68 (159)
Q Consensus 43 ~id~~~i~~i~~g~tk~~V~~~LG~P 68 (159)
.+..+...+|+-||++.+|.++.|--
T Consensus 3 ~~T~ek~~qiQFGMt~~qV~~i~Gae 28 (165)
T d2g2ub1 3 VMTGAKFTQIQFGMTRQQVLDIAGAE 28 (165)
T ss_dssp SCCHHHHHHSCTTCBHHHHHHHHCGG
T ss_pred CCCHHHHCCEEECCCHHHHHHHHCCC
T ss_conf 14777731121044599999862632
No 3
>d1bcoa1 b.48.1.1 (A:481-560) mu transposase, C-terminal domain {Bacteriophage mu [TaxId: 10677]}
Probab=18.05 E-value=25 Score=13.76 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=21.6
Q ss_pred EEEEEEECCCCCEEEEEECCCCCCCEEC
Q ss_conf 7899999899868432110434561403
Q gi|254780500|r 105 IVLKITFGEKGVVSSVSMERLPNRRFNP 132 (159)
Q Consensus 105 ~Vl~I~FD~~g~V~nI~~~~L~dg~~~~ 132 (159)
+-+.+.||..++-+.|-.|.+ ||+++-
T Consensus 49 ~~V~vryDp~Dl~~~V~Vy~~-dG~fiC 75 (80)
T d1bcoa1 49 KKVVVRFDPQQLHSTVYCYTL-DGRFIC 75 (80)
T ss_dssp SEEEEEECGGGTTTEEEEECT-TSCEEE
T ss_pred CEEEEEECHHHCCCEEEEEEC-CCCEEE
T ss_conf 989999996898885999948-997999
No 4
>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.71 E-value=29 Score=13.33 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=32.4
Q ss_pred HHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCHHCCCCEEEEEEEEEEEECCCCCE
Q ss_conf 64048999999999837852122446775304888721000000010121111357899999899868
Q gi|254780500|r 50 SLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVV 117 (159)
Q Consensus 50 ~~i~~g~tk~~V~~~LG~Ps~~~~f~~n~~~~~YYi~~k~~~~~~af~~pkvier~Vl~I~FD~~g~V 117 (159)
-.|.+++|.++..+.|| |. .++++|||..-+.. .+|..-.| .-|.|.+..-+
T Consensus 7 RrLPP~Lte~~F~~~l~-~~-------~~~d~~~f~~Gk~s------~~~~~~SR--AYi~F~~~~~v 58 (91)
T d1uw4a_ 7 RRLPPTLTKEQLQEHLQ-PM-------PEHDYFEFFSNDTS------LYPHMYAR--AYINFKNQEDI 58 (91)
T ss_dssp EEECTTCCHHHHHHHHC-SC-------CCEEEEEEEESCCS------STTCCCEE--EEEEESSSHHH
T ss_pred ECCCCCCCHHHHHHHHC-CC-------CCEEEEEEECCCCC------CCCCCCEE--EEEEECCHHHH
T ss_conf 36979899999999857-76-------74589988589867------89974458--99986899999
No 5
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=15.05 E-value=32 Score=13.07 Aligned_cols=65 Identities=20% Similarity=0.361 Sum_probs=41.8
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCHHCCCCEEEEEEEEEEEECCCCCEE--EEEECCCCCCCEECCCCC
Q ss_conf 999998378521224467753048887210000000101211113578999998998684--321104345614034541
Q gi|254780500|r 59 SHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVS--SVSMERLPNRRFNPNPHT 136 (159)
Q Consensus 59 ~~V~~~LG~Ps~~~~f~~n~~~~~YYi~~k~~~~~~af~~pkvier~Vl~I~FD~~g~V~--nI~~~~L~dg~~~~~~~~ 136 (159)
+.|.+.+|...|. .|+| ++| |. +.+.+.||+.|.+. .|..|-||-.|++.-
T Consensus 175 npiLEAFGNAkT~--~N~N--------SSR-------FG-------k~~~l~f~~~g~i~ga~i~~yLLEksRvv~~--- 227 (789)
T d1kk8a2 175 NPVLEAYGNAKTT--RNNN--------SSR-------FG-------KFIRIHFGPTGKIAGADIETYLLEKSRVTYQ--- 227 (789)
T ss_dssp HHHHHHHHEECCS--SCTT--------EES-------SE-------EEEEEEECTTSSEEEEEEEEECCCGGGGTCC---
T ss_pred HHHHHHCCCCCCC--CCCC--------CCC-------CC-------EEEEEEECCCCCCCCCEEEEECCCCCEEEEC---
T ss_conf 6899855356788--9896--------477-------23-------5679898899977454027864877504632---
Q ss_pred CCCCCCCHH--HHHHHHHCC
Q ss_conf 588885224--389998533
Q gi|254780500|r 137 IPAPIQTAD--GFLRRLLNP 154 (159)
Q Consensus 137 ~~~~~~~~~--~fl~~l~~~ 154 (159)
+..|. -+|-||+..
T Consensus 228 ----~~gErnfHIFY~ll~G 243 (789)
T d1kk8a2 228 ----QSAERNYHIFYQICSN 243 (789)
T ss_dssp ----CTTCCSBHHHHHHTSC
T ss_pred ----CCCCCHHHHHHHHHCC
T ss_conf ----6544206999999828
No 6
>d1ojja_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Humicola insolens, Cel7b [TaxId: 34413]}
Probab=12.42 E-value=38 Score=12.62 Aligned_cols=29 Identities=7% Similarity=0.114 Sum_probs=23.5
Q ss_pred EEEEE--CCCCCEEEEEECCCCCCCEECCCC
Q ss_conf 99999--899868432110434561403454
Q gi|254780500|r 107 LKITF--GEKGVVSSVSMERLPNRRFNPNPH 135 (159)
Q Consensus 107 l~I~F--D~~g~V~nI~~~~L~dg~~~~~~~ 135 (159)
++-.| |+.|.|+.|.|+=.++|++++.+.
T Consensus 268 VVTQF~~~~~G~LteIrR~YVQ~GkvI~n~~ 298 (399)
T d1ojja_ 268 VVTQFLANRRGKLEKIHRFYVQDGKVIESFY 298 (399)
T ss_dssp EEEEEEECTTSCEEEEEEEEEETTEEECCCC
T ss_pred EEEEEECCCCCCEEEEEEEEEECCEEECCCC
T ss_conf 9978873899765799999987999935876
No 7
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=10.63 E-value=44 Score=12.26 Aligned_cols=67 Identities=18% Similarity=0.293 Sum_probs=41.8
Q ss_pred CHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCHHCCCCEEEEEEEEEEEECCCCCEE--EEEECCCCCCCEECCC
Q ss_conf 99999998378521224467753048887210000000101211113578999998998684--3211043456140345
Q gi|254780500|r 57 SRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVS--SVSMERLPNRRFNPNP 134 (159)
Q Consensus 57 tk~~V~~~LG~Ps~~~~f~~n~~~~~YYi~~k~~~~~~af~~pkvier~Vl~I~FD~~g~V~--nI~~~~L~dg~~~~~~ 134 (159)
.-+.|.+.+|...|. .|+| ++| . =+.+.+.||..|.+. .|..|.||-.|++.
T Consensus 147 ~~n~iLeaFGnakT~--~N~N--------SSR---f-----------gk~~~l~f~~~g~i~ga~i~~ylLEksRv~~-- 200 (710)
T d1br2a2 147 QANPILEAFGNAKTV--KNDN--------SSR---F-----------GKFIRINFDVTGYIVGANIETYLLEKSRAIR-- 200 (710)
T ss_dssp THHHHHHHHHEECCS--SCTT--------EES---S-----------EEEEEEEECTTSCEEEEEEEEECCCGGGGTC--
T ss_pred HHHHHHHHHCCCCCC--CCCC--------CCC---C-----------CEEEEEEECCCCCEEEEEEEEECCCCCEEEE--
T ss_conf 877899970897668--9998--------777---4-----------2234468758994887899971024744567--
Q ss_pred CCCCCCCCCHH--HHHHHHHCC
Q ss_conf 41588885224--389998533
Q gi|254780500|r 135 HTIPAPIQTAD--GFLRRLLNP 154 (159)
Q Consensus 135 ~~~~~~~~~~~--~fl~~l~~~ 154 (159)
.+..|. -+|-||+..
T Consensus 201 -----~~~~ErnfHIFY~ll~G 217 (710)
T d1br2a2 201 -----QAKDERTFHIFYYLIAG 217 (710)
T ss_dssp -----CCTTCCCBHHHHHHHHH
T ss_pred -----ECCCCCCCEEHHHHHCC
T ss_conf -----45899851339998818
No 8
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=10.49 E-value=44 Score=12.23 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=19.0
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCC
Q ss_conf 888640489999999998378521
Q gi|254780500|r 47 SAISLVSQGSSRSHVIESLGSPSF 70 (159)
Q Consensus 47 ~~i~~i~~g~tk~~V~~~LG~Ps~ 70 (159)
.....+..|.++.+|...+|..-.
T Consensus 13 ~a~~l~~~G~s~~~iA~~~gVSr~ 36 (47)
T d1ijwc_ 13 QISRLLEKGHPRQQLAIIFGIGVS 36 (47)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHH
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHH
T ss_conf 999999889979999999796999
No 9
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=8.82 E-value=51 Score=11.85 Aligned_cols=68 Identities=19% Similarity=0.374 Sum_probs=42.4
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCHHCCCCEEEEEEEEEEEECCCCCEE--EEEECCCCCCCEECCCC
Q ss_conf 9999998378521224467753048887210000000101211113578999998998684--32110434561403454
Q gi|254780500|r 58 RSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVS--SVSMERLPNRRFNPNPH 135 (159)
Q Consensus 58 k~~V~~~LG~Ps~~~~f~~n~~~~~YYi~~k~~~~~~af~~pkvier~Vl~I~FD~~g~V~--nI~~~~L~dg~~~~~~~ 135 (159)
-+.|++.+|...|. .|+| ++| | -+.+.+.||..|.+. .|..|.||-.|++.-.
T Consensus 176 ~npiLEAFGNAkT~--~N~N--------SSR-------F-------gk~~~l~f~~~g~i~ga~i~~ylLEksRv~~~~- 230 (794)
T d2mysa2 176 ANPLLEAFGNAKTV--RNDN--------SSR-------F-------GKFIRIHFGATGKLASADIETYLLEKSRVTFQL- 230 (794)
T ss_dssp HHHHHHHHHEECCS--SCSS--------EEC-------S-------EEEEEEEECSSSSEEECCEEEECCCGGGGTCCC-
T ss_pred HHHHHHHHCCCCCC--CCCC--------HHH-------H-------HEEEEEEECCCCCEEEEEEEEEECCCCEEEECC-
T ss_conf 62699985487556--6687--------201-------1-------101366777999786689999853785377347-
Q ss_pred CCCCCCCCHHHHHHHHHCC
Q ss_conf 1588885224389998533
Q gi|254780500|r 136 TIPAPIQTADGFLRRLLNP 154 (159)
Q Consensus 136 ~~~~~~~~~~~fl~~l~~~ 154 (159)
++-..=-+|-||+.+
T Consensus 231 ----~gErnfHIFYqll~g 245 (794)
T d2mysa2 231 ----PAERSYHIFYQIMSN 245 (794)
T ss_dssp ----TTCCCBHHHHHHTTC
T ss_pred ----CCCCCHHHHHHHHCC
T ss_conf ----654419999999839
No 10
>d3ovwa_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Fusarium oxysporum [TaxId: 5507]}
Probab=8.69 E-value=52 Score=11.81 Aligned_cols=26 Identities=4% Similarity=0.086 Sum_probs=21.7
Q ss_pred CCCCCEEEEEECCCCCCCEECCCCCC
Q ss_conf 89986843211043456140345415
Q gi|254780500|r 112 GEKGVVSSVSMERLPNRRFNPNPHTI 137 (159)
Q Consensus 112 D~~g~V~nI~~~~L~dg~~~~~~~~~ 137 (159)
|+.|.|+.|.|+=.++|++++.+...
T Consensus 275 ~~~G~L~eIrR~YVQ~GkvI~n~~~~ 300 (400)
T d3ovwa_ 275 NKQGDLIELHRHYIQDNKVIESAVVN 300 (400)
T ss_dssp CTTSCEEEEEEEEEETTEEEECCCCC
T ss_pred CCCCCEEEEEEEEEECCEEECCCCCC
T ss_conf 89853689989996099996688756
Done!