RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780500|ref|YP_003064913.1| hypothetical protein
CLIBASIA_01935 [Candidatus Liberibacter asiaticus str. psy62]
(159 letters)
>gnl|CDD|151839 pfam11399, DUF3192, Protein of unknown function (DUF3192). Some
members in this family of proteins are annotated as
lipoproteins however this cannot be confirmed.
Length = 102
Score = 31.4 bits (72), Expect = 0.10
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 49 ISLVSQGSSRSHVIESLGSPSFS--ILHNGNRSQSFYYVSQKKK 90
I+ +S G S+ V+ LG+ FS + + Q +Y +Q K
Sbjct: 28 IAKLSLGQSKDQVLTLLGTADFSEAKTKDDKQYQVLFYRTQHVK 71
>gnl|CDD|151949 pfam11512, Atu4866, Agrobacterium tumefaciens protein Atu4866.
Atu4866 is a protein with unknown function from
Agrobacterium tumefaciens however the structure has been
determined. Atu4866 adopts a streptavidin-like fold and
has a beta-barrel/sandwich which is formed by eight
antiparallel beta-strands. Atu4866 has a potential
ligand-binding site where is has a stretch of conserved
residues on the surface.
Length = 78
Score = 28.1 bits (63), Expect = 0.93
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 143 TADGFLRRLLNPNGR 157
TADG +R L PNGR
Sbjct: 12 TADGRIRHELLPNGR 26
>gnl|CDD|184916 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 584
Score = 26.8 bits (59), Expect = 2.9
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
Query: 78 RSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVV 117
RS++ +Y P + L P+ M ++ +I E VV
Sbjct: 166 RSRTHHY--------PFRLLPPRTMRALIARICEQEGVVV 197
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate
lyase/N-acetylglutamate synthase; Provisional.
Length = 614
Score = 26.7 bits (59), Expect = 3.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 56 SSRSHVIESLGSPSFSILH 74
S R HV+E + S S+LH
Sbjct: 230 SDRDHVMELMSVASISMLH 248
>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases. This family
consists of L-diaminobutyric acid transaminases. This
general designation covers both 2.6.1.76
(diaminobutyrate-2-oxoglutarate transaminase, which uses
glutamate as the amino donor in DABA biosynthesis), and
2.6.1.46 (diaminobutyrate--pyruvate transaminase, which
uses alanine as the amino donor). Most members with
known function are 2.6.1.76, and at least some
annotations as 2.6.1.46 in current databases at time of
model revision are incorrect. A distinct branch of this
family contains examples of 2.6.1.76 nearly all of which
are involved in ectoine biosynthesis. A related enzyme
is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also
called GABA transaminase. These enzymes all are
pyridoxal phosphate-containing class III
aminotransferase.
Length = 442
Score = 26.5 bits (58), Expect = 3.6
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 14 KLSFNKALFIIVIGLVVDYHVSYGSISGASLDMSAISLVSQGSSRSHVI 62
K +F +AL I+ +DY + + SGA +AI L + R++VI
Sbjct: 84 KDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVI 132
>gnl|CDD|102219 PRK06163, PRK06163, hypothetical protein; Provisional.
Length = 202
Score = 25.9 bits (57), Expect = 5.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 51 LVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPV 94
LV++ VI +G+ +F + G R Q+FY + FP+
Sbjct: 22 LVAKLKDEEAVIGGIGNTNFDLWAAGQRPQNFYMLGSMGLAFPI 65
>gnl|CDD|130429 TIGR01362, KDO8P_synth, 3-deoxy-8-phosphooctulonate synthase. In
Gram-negative bacteria, this is the first step in the
biosynthesis of 3-deoxy-D-manno-octulosonate, part of
the oligosaccharide core of lipopolysaccharide.
Length = 258
Score = 25.4 bits (56), Expect = 6.3
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 95 KFLSPKIMEYIVLKITF-GEKGVV 117
+FLSP M+ +V K+ G K ++
Sbjct: 125 QFLSPWDMKNVVEKVLSTGNKNIL 148
>gnl|CDD|178080 PLN02461, PLN02461, Probable pyruvate kinase.
Length = 511
Score = 25.3 bits (56), Expect = 7.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 45 DMSAISLVSQGSSRSHVIESLGSPSFSIL 73
D A+S V +GS V + LG + SIL
Sbjct: 209 DFIALSFVRKGSDLVEVRKVLGEHAKSIL 237
>gnl|CDD|130740 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase. This model
represents a family of bacterial oxidoreductases with
covalently linked FAD, closely related to two different
eukaryotic oxidases, L-gulonolactone oxidase (EC
1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase
(EC 1.1.3.37) from Saccharomyces cerevisiae.
Length = 419
Score = 24.8 bits (54), Expect = 9.2
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 104 YIVLKITFGEKGVVSSVSMERLPNRR 129
Y+ +++ G GV+S V+++ + R
Sbjct: 152 YLAARVSLGALGVISQVTLQTVALFR 177
>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional.
Length = 455
Score = 24.9 bits (55), Expect = 9.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 56 SSRSHVIESLGSPSFSILH 74
S R HV+E L S S++H
Sbjct: 230 SDRDHVLELLSDASISMVH 248
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.137 0.399
Gapped
Lambda K H
0.267 0.0605 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,619,891
Number of extensions: 153432
Number of successful extensions: 323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 18
Length of query: 159
Length of database: 5,994,473
Length adjustment: 86
Effective length of query: 73
Effective length of database: 4,136,185
Effective search space: 301941505
Effective search space used: 301941505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)