RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780500|ref|YP_003064913.1| hypothetical protein
CLIBASIA_01935 [Candidatus Liberibacter asiaticus str. psy62]
(159 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 40.7 bits (95), Expect = 2e-04
Identities = 37/183 (20%), Positives = 60/183 (32%), Gaps = 72/183 (39%)
Query: 25 VIGLV--VDYHVSYGSISGAS-LDM-SAISLV---SQG--------SSRS---------H 60
+IG++ Y V+ + G + ++ S + SQG + S
Sbjct: 240 LIGVIQLAHYVVT-AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK 298
Query: 61 VIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVS-- 118
I L F I G R + +P L P I+E + E GV S
Sbjct: 299 AITVL----FFI---GVRCY---------EAYPNTSLPPSILED---SLENNE-GVPSPM 338
Query: 119 -SVS-MER-------------LP-NRR-----FN-PNPHTIPAPIQTADGF---LRRLLN 153
S+S + + LP ++ N + P Q+ G LR+
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 154 PNG 156
P+G
Sbjct: 399 PSG 401
Score = 35.7 bits (82), Expect = 0.005
Identities = 31/149 (20%), Positives = 48/149 (32%), Gaps = 63/149 (42%)
Query: 38 SISGAS-------LDMS----------AISLVSQGSSRSHVIESLGSPSFSILHNGNRS- 79
SIS + ++ + ISLV+ +++ V+ G P S L+ N +
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN--GAKNLVVS--GPPQ-S-LYGLNLTL 393
Query: 80 ----------QS---FYYVSQKKKWFPVKFL-------SPKIMEYIVLKITFGEKGVVSS 119
QS F S++K F +FL S +
Sbjct: 394 RKAKAPSGLDQSRIPF---SERKLKFSNRFLPVASPFHSH----LL--------VPASDL 438
Query: 120 VSMERLP--NRRFNPNPHTIPAPIQTADG 146
+ + L N FN IP T DG
Sbjct: 439 I-NKDLVKNNVSFNAKDIQIPV-YDTFDG 465
>2pxg_A Outer membrane protein; two layer alpha/beta plait, two layer
sandwich architecture; NMR {Xanthomonas axonopodis PV}
Length = 118
Score = 40.2 bits (94), Expect = 2e-04
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 10/87 (11%)
Query: 41 GASLDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPK 100
G + +A+ + G S+ V LG+PS + R + Y S ++
Sbjct: 15 GNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDPFHAQR---WDYTSTQRV------DRLA 65
Query: 101 IMEYIVLKITFGEKGVVSSVSMERLPN 127
E + F E V + P+
Sbjct: 66 RTEIKNFTVFF-ENEQVVRWEGDYFPS 91
>2jmb_A AGR_L_42P, hypothetical protein ATU4866; structural genomics,
ontario centre for structural proteomics, OCSP, unknown
function; NMR {Agrobacterium tumefaciens str}
Length = 79
Score = 26.7 bits (59), Expect = 2.2
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 143 TADGFLRRLLNPNGR 157
TADG +R+ L PNGR
Sbjct: 11 TADGRIRQELLPNGR 25
>2p10_A MLL9387 protein; NP_085906.1, hypothetical protein, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 2.15A {Mesorhizobium loti MAFF303099} SCOP:
c.1.12.9
Length = 286
Score = 25.9 bits (57), Expect = 4.0
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 98 SPKIMEYIVLKITFGEKGVVSSVSMERLP 126
+P+ + +L G G + SMERLP
Sbjct: 239 NPEDARF-ILDSCQGCHGFYGASSMERLP 266
>3a98_B Engulfment and cell motility protein 1; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Length = 203
Score = 25.9 bits (56), Expect = 4.3
Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 8/88 (9%)
Query: 8 NNFFFGKLSFNKALFIIVIGLVVDYHVSYGSISGASLDMSAISLVSQGSSRSHVIESLGS 67
+ F++ +LS N + L ++ I V G H+ E
Sbjct: 48 DKFWYCRLSPNHKVLHYGDLEESPQGEVPHDSLQDKLPVADIKAVVTGKDCPHMKEKGAL 107
Query: 68 P--------SFSILHNGNRSQSFYYVSQ 87
+FSIL++ N +F +
Sbjct: 108 KQNKEVLELAFSILYDSNCQLNFIAPDK 135
>1z8r_A Coxsackievirus B4 polyprotein; beta barrel coordinated zinc ION,
hydrolase; NMR {Human coxsackievirus B4}
Length = 166
Score = 25.4 bits (56), Expect = 6.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 83 YYVSQKKKWFPVKFLSPKIME 103
Y+ + K K +PV F P ++E
Sbjct: 79 YFCASKSKHYPVSFEGPGLVE 99
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 25.0 bits (54), Expect = 7.0
Identities = 7/47 (14%), Positives = 16/47 (34%)
Query: 53 SQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSP 99
S + + L P ++H G+ + + KW + +
Sbjct: 6 SGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNV 52
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; 2.20A {Shewanella oneidensis}
Length = 280
Score = 24.7 bits (53), Expect = 9.0
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 116 VVSSVSMERLPNRR-----FNPNPHTIPAPIQTADGFLRRLLN 153
V++ ++ +R +P+P + + TAD +L L
Sbjct: 233 VINPEGTDKTKSRISLPLFLHPHPSVVLSERYTADSYLMERLR 275
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.137 0.399
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,390,776
Number of extensions: 59482
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 10
Length of query: 159
Length of database: 5,693,230
Length adjustment: 85
Effective length of query: 74
Effective length of database: 3,632,490
Effective search space: 268804260
Effective search space used: 268804260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)