RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780500|ref|YP_003064913.1| hypothetical protein
CLIBASIA_01935 [Candidatus Liberibacter asiaticus str. psy62]
         (159 letters)



>d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease,
           catalytic domain {Klebsiella aerogenes [TaxId: 28451]}
          Length = 385

 Score = 26.2 bits (58), Expect = 1.4
 Identities = 8/38 (21%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 30  VDYHVSY-GSISGASLDMSAISLVSQGSSRSHVIESLG 66
           + + V   G++ G++     ++ +SQ ++ + V E L 
Sbjct: 288 IAHEVGMFGAL-GSARHHCRLTFLSQAAAANGVAERLN 324


>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 147

 Score = 25.1 bits (54), Expect = 2.7
 Identities = 7/48 (14%), Positives = 17/48 (35%)

Query: 53  SQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPK 100
           S    +   +  L  P   ++H G+   +      + KW  +   + +
Sbjct: 6   SGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQ 53


>d2hrva_ b.47.1.4 (A:) 2A cysteine proteinase {Human rhinovirus 2
           [TaxId: 12130]}
          Length = 139

 Score = 24.6 bits (54), Expect = 4.3
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 83  YYVSQKKKWFPVKFLSPKIME 103
           YY   K ++FP+   S    E
Sbjct: 59  YYCKHKNRYFPITVTSHDWYE 79


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0705    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 597,240
Number of extensions: 25539
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 3
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.7 bits)