Query gi|254780501|ref|YP_003064914.1| hypothetical protein CLIBASIA_01940 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 31
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Sun May 29 23:03:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780501.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00836 FERM_C The FERM_C doma 28.8 23 0.00057 18.7 0.8 22 10-31 27-48 (92)
2 KOG1385 consensus 19.5 72 0.0018 16.4 1.9 16 7-22 67-82 (453)
3 COG1786 Swiveling domain assoc 13.8 90 0.0023 15.9 1.2 25 5-29 51-76 (131)
4 PRK06328 type III secretion sy 12.2 55 0.0014 16.9 -0.3 23 1-25 1-23 (223)
5 pfam01150 GDA1_CD39 GDA1/CD39 9.8 2.1E+02 0.0053 14.3 2.0 16 7-22 9-24 (424)
6 pfam10483 Hap2_elong Histone a 9.6 1.2E+02 0.0029 15.5 0.6 13 12-24 271-286 (286)
7 pfam09380 FERM_C FERM C-termin 8.8 1.3E+02 0.0033 15.2 0.6 21 11-31 18-38 (85)
8 TIGR02070 mono_pep_trsgly mono 7.3 1.9E+02 0.0047 14.5 0.9 10 7-16 151-160 (228)
9 cd04724 Tryptophan_synthase_al 7.2 2.7E+02 0.0069 13.8 1.7 18 5-23 154-171 (242)
10 pfam03317 ELF ELF protein. Thi 7.2 1E+02 0.0026 15.7 -0.5 11 19-29 248-258 (284)
No 1
>cd00836 FERM_C The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs) , the tryosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Probab=28.83 E-value=23 Score=18.66 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=16.7
Q ss_pred EEECCCCCCCEEEHHHHHCCCC
Q ss_conf 7513588651120325403779
Q gi|254780501|r 10 NIAQKGSTGSRILWEEIKNASF 31 (31)
Q Consensus 10 niaqkgstgsrilweeiknasf 31 (31)
.|-+.+..-.++.|.+|++.||
T Consensus 27 ~vy~~~~~~~~f~W~~I~kisf 48 (92)
T cd00836 27 LVYDDGTPINEFPWPEIRKISF 48 (92)
T ss_pred EEEECCCEEEEEECHHEEEEEE
T ss_conf 9995998889985313159997
No 2
>KOG1385 consensus
Probab=19.50 E-value=72 Score=16.37 Aligned_cols=16 Identities=44% Similarity=0.644 Sum_probs=12.5
Q ss_pred EEEEEECCCCCCCEEE
Q ss_conf 9997513588651120
Q gi|254780501|r 7 IYLNIAQKGSTGSRIL 22 (31)
Q Consensus 7 iylniaqkgstgsril 22 (31)
-|--|-.-||||||+.
T Consensus 67 ~Y~iiiDAGSTGsRvH 82 (453)
T KOG1385 67 QYAIIIDAGSTGTRVH 82 (453)
T ss_pred EEEEEEECCCCCCEEE
T ss_conf 8999996688862589
No 3
>COG1786 Swiveling domain associated with predicted aconitase [Energy production and conversion]
Probab=13.79 E-value=90 Score=15.95 Aligned_cols=25 Identities=44% Similarity=0.585 Sum_probs=16.9
Q ss_pred EEEEEEEECCCCC-CCEEEHHHHHCC
Q ss_conf 7999975135886-511203254037
Q gi|254780501|r 5 GLIYLNIAQKGST-GSRILWEEIKNA 29 (31)
Q Consensus 5 gliylniaqkgst-gsrilweeikna 29 (31)
|-|..--.-|||| ||-+||+-++|.
T Consensus 51 Gkilv~P~grGStvGSyVl~~l~~~G 76 (131)
T COG1786 51 GKILVFPGGRGSTVGSYVLYELAKNG 76 (131)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 13999508987650289999999849
No 4
>PRK06328 type III secretion system protein; Validated
Probab=12.19 E-value=55 Score=16.91 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=15.9
Q ss_pred CCEEEEEEEEEECCCCCCCEEEHHH
Q ss_conf 9455799997513588651120325
Q gi|254780501|r 1 MKYFGLIYLNIAQKGSTGSRILWEE 25 (31)
Q Consensus 1 mkyfgliylniaqkgstgsrilwee 25 (31)
||+|.|||-.- .-..|+++|--+
T Consensus 1 ~~~~~~~~~~~--~~~P~~~vl~ae 23 (223)
T PRK06328 1 MKFFSLIFKDQ--EVVPNKKVLSPE 23 (223)
T ss_pred CCCHHHHCCCC--CCCCCCCCCCHH
T ss_conf 95123311771--228642415799
No 5
>pfam01150 GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) family.
Probab=9.83 E-value=2.1e+02 Score=14.29 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=11.7
Q ss_pred EEEEEECCCCCCCEEE
Q ss_conf 9997513588651120
Q gi|254780501|r 7 IYLNIAQKGSTGSRIL 22 (31)
Q Consensus 7 iylniaqkgstgsril 22 (31)
-|--+-.-||||||+-
T Consensus 9 ~Y~VViDAGSTGsRvh 24 (424)
T pfam01150 9 KYGVVIDAGSSGTRLH 24 (424)
T ss_pred EEEEEEECCCCCCEEE
T ss_conf 0899998888987689
No 6
>pfam10483 Hap2_elong Histone acetylation protein 2. Hap2 is one of three histone acetyltransferases proteins that, in yeasts, are found associated with elongating forms of RNA polymerase II (Elongator). The Haps can be isolated in two forms, as a six-subunit complex with Elongator and as a complex of the three proteins on their own. The role of the Hap complex in transcription is still speculative, being possibly to keep the HAT activity of free Elongator in check, allowing histone acetylation only in the presence of a transcribing polymerase, or the interaction with Haps might render Elongator susceptible to modifications thereby altering its activity.
Probab=9.55 E-value=1.2e+02 Score=15.45 Aligned_cols=13 Identities=46% Similarity=0.849 Sum_probs=8.8
Q ss_pred ECCC---CCCCEEEHH
Q ss_conf 1358---865112032
Q gi|254780501|r 12 AQKG---STGSRILWE 24 (31)
Q Consensus 12 aqkg---stgsrilwe 24 (31)
||++ ..|.||++|
T Consensus 271 AQ~~~g~~~GG~IlYe 286 (286)
T pfam10483 271 AQEGLGGGEGGAIVYE 286 (286)
T ss_pred HCCCCCCCCCCEEEEC
T ss_conf 2145689987415419
No 7
>pfam09380 FERM_C FERM C-terminal PH-like domain.
Probab=8.83 E-value=1.3e+02 Score=15.23 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=14.1
Q ss_pred EECCCCCCCEEEHHHHHCCCC
Q ss_conf 513588651120325403779
Q gi|254780501|r 11 IAQKGSTGSRILWEEIKNASF 31 (31)
Q Consensus 11 iaqkgstgsrilweeiknasf 31 (31)
|.+.+..-....|.+|.|-||
T Consensus 18 Vy~~~~~~~~f~W~~I~kisf 38 (85)
T pfam09380 18 VYQDNNKINTFPWSEIRKISF 38 (85)
T ss_pred EEECCCEEEEEECCCCEEEEE
T ss_conf 998999899985775439997
No 8
>TIGR02070 mono_pep_trsgly monofunctional biosynthetic peptidoglycan transglycosylase; InterPro: IPR011812 This family is one of the transglycosylases involved in the late stages of peptidoglycan biosynthesis. Members tend to be small, about 240 amino acids in length, and consist almost entirely of a domain, which describes transglycosylases. Species with this protein will have several other transglycosylases as well. All species with this protein are proteobacteria that produce murein (peptidoglycan).; GO: 0016763 transferase activity transferring pentosyl groups, 0009252 peptidoglycan biosynthetic process, 0009274 peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=7.30 E-value=1.9e+02 Score=14.53 Aligned_cols=10 Identities=40% Similarity=0.757 Sum_probs=8.1
Q ss_pred EEEEEECCCC
Q ss_conf 9997513588
Q gi|254780501|r 7 IYLNIAQKGS 16 (31)
Q Consensus 7 iylniaqkgs 16 (31)
||||+++=|+
T Consensus 151 vYLNs~EwG~ 160 (228)
T TIGR02070 151 VYLNSVEWGN 160 (228)
T ss_pred EEEEEEEECC
T ss_conf 1110101665
No 9
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=7.23 E-value=2.7e+02 Score=13.77 Aligned_cols=18 Identities=39% Similarity=0.789 Sum_probs=13.9
Q ss_pred EEEEEEEECCCCCCCEEEH
Q ss_conf 7999975135886511203
Q gi|254780501|r 5 GLIYLNIAQKGSTGSRILW 23 (31)
Q Consensus 5 gliylniaqkgstgsrilw 23 (31)
|.+|+ ++.+|.||++-.+
T Consensus 154 gfiY~-vs~~GvTG~~~~~ 171 (242)
T cd04724 154 GFIYY-VSRTGVTGARTEL 171 (242)
T ss_pred CEEEE-EECCCCCCCCCCC
T ss_conf 84999-8577777877556
No 10
>pfam03317 ELF ELF protein. This is a family of hypothetical proteins from cereal crops.
Probab=7.20 E-value=1e+02 Score=15.74 Aligned_cols=11 Identities=64% Similarity=1.159 Sum_probs=8.1
Q ss_pred CEEEHHHHHCC
Q ss_conf 11203254037
Q gi|254780501|r 19 SRILWEEIKNA 29 (31)
Q Consensus 19 srilweeikna 29 (31)
.||+||||..|
T Consensus 248 q~i~w~~i~ka 258 (284)
T pfam03317 248 QNILWEEIEKA 258 (284)
T ss_pred HHHHHHHHHHH
T ss_conf 98778874688
Done!