Query gi|254780501|ref|YP_003064914.1| hypothetical protein CLIBASIA_01940 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 31
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 20:34:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780501.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aap_A Ectonucleoside triphosp 10.4 1.1E+02 0.0048 14.5 2.0 15 8-22 4-18 (353)
2 2fz0_A R-snare NYV1P, V-snare 10.3 70 0.0029 15.5 0.9 23 1-23 1-23 (149)
3 3cj1_A Ectonucleoside triphosp 10.0 1.3E+02 0.0054 14.3 2.2 17 6-22 33-49 (456)
4 2dao_A Transcription factor ET 5.5 1.3E+02 0.0054 14.3 0.4 14 14-27 3-16 (118)
5 1msi_A Type III antifreeze pro 5.2 1.9E+02 0.0081 13.5 1.1 15 16-30 51-65 (70)
6 1s7i_A Hypothetical protein PA 4.5 2.2E+02 0.0093 13.2 1.0 16 1-16 7-22 (124)
7 3kde_C Transposable element P 4.3 1.5E+02 0.0063 13.9 0.1 14 17-30 23-36 (77)
8 1rd5_A Tryptophan synthase alp 3.6 2.6E+02 0.011 12.9 0.8 18 5-23 168-185 (262)
9 1ujp_A Tryptophan synthase alp 3.6 2.2E+02 0.0092 13.2 0.4 18 5-23 169-186 (271)
10 1geq_A Tryptophan synthase alp 3.4 3.1E+02 0.013 12.5 1.1 19 5-24 158-176 (248)
No 1
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*
Probab=10.35 E-value=1.1e+02 Score=14.50 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=10.7
Q ss_pred EEEEECCCCCCCEEE
Q ss_conf 997513588651120
Q gi|254780501|r 8 YLNIAQKGSTGSRIL 22 (31)
Q Consensus 8 ylniaqkgstgsril 22 (31)
|.-|-.-||||||+-
T Consensus 4 ~~VViDAGSTGtRv~ 18 (353)
T 3aap_A 4 CIAVIDAGSTGSRLH 18 (353)
T ss_dssp EEEEEEECSSCEEEE
T ss_pred EEEEEECCCCCCEEE
T ss_conf 899997999987589
No 2
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=10.32 E-value=70 Score=15.46 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=19.9
Q ss_pred CCEEEEEEEEEECCCCCCCEEEH
Q ss_conf 94557999975135886511203
Q gi|254780501|r 1 MKYFGLIYLNIAQKGSTGSRILW 23 (31)
Q Consensus 1 mkyfgliylniaqkgstgsrilw 23 (31)
||-|.+-|+.+-|.|++-|+-.-
T Consensus 1 MK~fnvSYvEvi~~g~~~sscy~ 23 (149)
T 2fz0_A 1 MKRFNVSYVEVIKNGETISSCFQ 23 (149)
T ss_dssp CCCCCCSEEEEEESSSCCCEEEC
T ss_pred CCCCCEEEEEEEECCEEEEEEEC
T ss_conf 97451589999959836522101
No 3
>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A*
Probab=10.02 E-value=1.3e+02 Score=14.26 Aligned_cols=17 Identities=24% Similarity=0.385 Sum_probs=12.5
Q ss_pred EEEEEEECCCCCCCEEE
Q ss_conf 99997513588651120
Q gi|254780501|r 6 LIYLNIAQKGSTGSRIL 22 (31)
Q Consensus 6 liylniaqkgstgsril 22 (31)
+-|--+-.-||||||+.
T Consensus 33 ~~Y~VViDAGSTGSRvh 49 (456)
T 3cj1_A 33 LKYGIVLDAGSSHTSMF 49 (456)
T ss_dssp EEEEEEEEECSSCEEEE
T ss_pred CCEEEEEECCCCCCEEE
T ss_conf 63899998578988689
No 4
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=5.50 E-value=1.3e+02 Score=14.28 Aligned_cols=14 Identities=43% Similarity=1.042 Sum_probs=9.3
Q ss_pred CCCCCCEEEHHHHH
Q ss_conf 58865112032540
Q gi|254780501|r 14 KGSTGSRILWEEIK 27 (31)
Q Consensus 14 kgstgsrilweeik 27 (31)
-|+.|.++|||=+.
T Consensus 3 ~~~~g~~~Lw~FL~ 16 (118)
T 2dao_A 3 SGSSGCRLLWDYVY 16 (118)
T ss_dssp CCCCCCCCHHHHHH
T ss_pred CCCCCCEEHHHHHH
T ss_conf 89998684999999
No 5
>1msi_A Type III antifreeze protein isoform HPLC 12; multigene family, thermal hysteresis; 1.25A {Macrozoarces americanus} SCOP: b.85.1.1
Probab=5.15 E-value=1.9e+02 Score=13.46 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=11.5
Q ss_pred CCCCEEEHHHHHCCC
Q ss_conf 865112032540377
Q gi|254780501|r 16 STGSRILWEEIKNAS 30 (31)
Q Consensus 16 stgsrilweeiknas 30 (31)
..+..|+|+.++|-|
T Consensus 51 ~~d~~I~~dmik~~~ 65 (70)
T 1msi_A 51 PLGTTLMPDMVKGYA 65 (70)
T ss_dssp CTTCBCCGGGBTTCC
T ss_pred CCCCCCCHHHHHHHH
T ss_conf 896872899985032
No 6
>1s7i_A Hypothetical protein PA1349; structural genomics, protein structure initiative, MCSG, PSI, midwest center for structural genomics; 1.80A {Pseudomonas aeruginosa} SCOP: d.58.4.9
Probab=4.50 E-value=2.2e+02 Score=13.19 Aligned_cols=16 Identities=44% Similarity=0.750 Sum_probs=11.6
Q ss_pred CCEEEEEEEEEECCCC
Q ss_conf 9455799997513588
Q gi|254780501|r 1 MKYFGLIYLNIAQKGS 16 (31)
Q Consensus 1 mkyfgliylniaqkgs 16 (31)
|||+-|||-+-..-.+
T Consensus 7 Mkyllli~~~~~~~~~ 22 (124)
T 1s7i_A 7 MKYLCLIYFDEAKLAA 22 (124)
T ss_dssp EEEEEEEEECGGGSSS
T ss_pred CCEEEEEEECCCCCCC
T ss_conf 7389999968112456
No 7
>3kde_C Transposable element P transposase; THAP domain, DNA-binding domain, zinc-finger, beta-alpha- beta, P-element transposase; HET: BRU; 1.74A {Drosophila melanogaster}
Probab=4.31 E-value=1.5e+02 Score=13.95 Aligned_cols=14 Identities=36% Similarity=0.513 Sum_probs=9.8
Q ss_pred CCCEEEHHHHHCCC
Q ss_conf 65112032540377
Q gi|254780501|r 17 TGSRILWEEIKNAS 30 (31)
Q Consensus 17 tgsrilweeiknas 30 (31)
.+-|-|||++-.-|
T Consensus 23 ~~KRkLWe~sLgcs 36 (77)
T 3kde_C 23 AIKRKLWEQSLGCS 36 (77)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHCCC
T ss_conf 88899999861877
No 8
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol- phosphate, lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=3.62 E-value=2.6e+02 Score=12.86 Aligned_cols=18 Identities=39% Similarity=0.748 Sum_probs=13.2
Q ss_pred EEEEEEEECCCCCCCEEEH
Q ss_conf 7999975135886511203
Q gi|254780501|r 5 GLIYLNIAQKGSTGSRILW 23 (31)
Q Consensus 5 gliylniaqkgstgsrilw 23 (31)
|.||+ ++..|.||++...
T Consensus 168 gfIY~-vs~~GvTG~~~~~ 185 (262)
T 1rd5_A 168 GFVYL-VSVNGVTGPRANV 185 (262)
T ss_dssp SCEEE-ECSSCCBCTTSCB
T ss_pred CEEEE-ECCCCCCCCCCCC
T ss_conf 62786-3034642212212
No 9
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus HB8} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=3.60 E-value=2.2e+02 Score=13.21 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=12.4
Q ss_pred EEEEEEEECCCCCCCEEEH
Q ss_conf 7999975135886511203
Q gi|254780501|r 5 GLIYLNIAQKGSTGSRILW 23 (31)
Q Consensus 5 gliylniaqkgstgsrilw 23 (31)
|.||+ ++..|.||+|-..
T Consensus 169 gFiY~-vs~~GvTG~~~~~ 186 (271)
T 1ujp_A 169 GFVYA-VSVTGVTGMRERL 186 (271)
T ss_dssp SCEEE-ECC----------
T ss_pred CEEEE-EECCCCCCCCCCC
T ss_conf 70788-4036777766555
No 10
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, X-RAY analysis, stability, calorimetry lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=3.44 E-value=3.1e+02 Score=12.51 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=13.6
Q ss_pred EEEEEEEECCCCCCCEEEHH
Q ss_conf 79999751358865112032
Q gi|254780501|r 5 GLIYLNIAQKGSTGSRILWE 24 (31)
Q Consensus 5 gliylniaqkgstgsrilwe 24 (31)
|.||+ +++.|-||+|-...
T Consensus 158 gfiY~-vs~~GvTG~~~~~~ 176 (248)
T 1geq_A 158 GFVYL-VSLYGTTGAREEIP 176 (248)
T ss_dssp SEEEE-ECCC-------CCC
T ss_pred CEEEE-ECCCCCCCCCCCCC
T ss_conf 71798-41455578775432
Done!