Query gi|254780501|ref|YP_003064914.1| hypothetical protein CLIBASIA_01940 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 31 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 20:34:39 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780501.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3aap_A Ectonucleoside triphosp 10.4 1.1E+02 0.0048 14.5 2.0 15 8-22 4-18 (353) 2 2fz0_A R-snare NYV1P, V-snare 10.3 70 0.0029 15.5 0.9 23 1-23 1-23 (149) 3 3cj1_A Ectonucleoside triphosp 10.0 1.3E+02 0.0054 14.3 2.2 17 6-22 33-49 (456) 4 2dao_A Transcription factor ET 5.5 1.3E+02 0.0054 14.3 0.4 14 14-27 3-16 (118) 5 1msi_A Type III antifreeze pro 5.2 1.9E+02 0.0081 13.5 1.1 15 16-30 51-65 (70) 6 1s7i_A Hypothetical protein PA 4.5 2.2E+02 0.0093 13.2 1.0 16 1-16 7-22 (124) 7 3kde_C Transposable element P 4.3 1.5E+02 0.0063 13.9 0.1 14 17-30 23-36 (77) 8 1rd5_A Tryptophan synthase alp 3.6 2.6E+02 0.011 12.9 0.8 18 5-23 168-185 (262) 9 1ujp_A Tryptophan synthase alp 3.6 2.2E+02 0.0092 13.2 0.4 18 5-23 169-186 (271) 10 1geq_A Tryptophan synthase alp 3.4 3.1E+02 0.013 12.5 1.1 19 5-24 158-176 (248) No 1 >3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A* Probab=10.35 E-value=1.1e+02 Score=14.50 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=10.7 Q ss_pred EEEEECCCCCCCEEE Q ss_conf 997513588651120 Q gi|254780501|r 8 YLNIAQKGSTGSRIL 22 (31) Q Consensus 8 ylniaqkgstgsril 22 (31) |.-|-.-||||||+- T Consensus 4 ~~VViDAGSTGtRv~ 18 (353) T 3aap_A 4 CIAVIDAGSTGSRLH 18 (353) T ss_dssp EEEEEEECSSCEEEE T ss_pred EEEEEECCCCCCEEE T ss_conf 899997999987589 No 2 >2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae} Probab=10.32 E-value=70 Score=15.46 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=19.9 Q ss_pred CCEEEEEEEEEECCCCCCCEEEH Q ss_conf 94557999975135886511203 Q gi|254780501|r 1 MKYFGLIYLNIAQKGSTGSRILW 23 (31) Q Consensus 1 mkyfgliylniaqkgstgsrilw 23 (31) ||-|.+-|+.+-|.|++-|+-.- T Consensus 1 MK~fnvSYvEvi~~g~~~sscy~ 23 (149) T 2fz0_A 1 MKRFNVSYVEVIKNGETISSCFQ 23 (149) T ss_dssp CCCCCCSEEEEEESSSCCCEEEC T ss_pred CCCCCEEEEEEEECCEEEEEEEC T ss_conf 97451589999959836522101 No 3 >3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A* Probab=10.02 E-value=1.3e+02 Score=14.26 Aligned_cols=17 Identities=24% Similarity=0.385 Sum_probs=12.5 Q ss_pred EEEEEEECCCCCCCEEE Q ss_conf 99997513588651120 Q gi|254780501|r 6 LIYLNIAQKGSTGSRIL 22 (31) Q Consensus 6 liylniaqkgstgsril 22 (31) +-|--+-.-||||||+. T Consensus 33 ~~Y~VViDAGSTGSRvh 49 (456) T 3cj1_A 33 LKYGIVLDAGSSHTSMF 49 (456) T ss_dssp EEEEEEEEECSSCEEEE T ss_pred CCEEEEEECCCCCCEEE T ss_conf 63899998578988689 No 4 >2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=5.50 E-value=1.3e+02 Score=14.28 Aligned_cols=14 Identities=43% Similarity=1.042 Sum_probs=9.3 Q ss_pred CCCCCCEEEHHHHH Q ss_conf 58865112032540 Q gi|254780501|r 14 KGSTGSRILWEEIK 27 (31) Q Consensus 14 kgstgsrilweeik 27 (31) -|+.|.++|||=+. T Consensus 3 ~~~~g~~~Lw~FL~ 16 (118) T 2dao_A 3 SGSSGCRLLWDYVY 16 (118) T ss_dssp CCCCCCCCHHHHHH T ss_pred CCCCCCEEHHHHHH T ss_conf 89998684999999 No 5 >1msi_A Type III antifreeze protein isoform HPLC 12; multigene family, thermal hysteresis; 1.25A {Macrozoarces americanus} SCOP: b.85.1.1 Probab=5.15 E-value=1.9e+02 Score=13.46 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=11.5 Q ss_pred CCCCEEEHHHHHCCC Q ss_conf 865112032540377 Q gi|254780501|r 16 STGSRILWEEIKNAS 30 (31) Q Consensus 16 stgsrilweeiknas 30 (31) ..+..|+|+.++|-| T Consensus 51 ~~d~~I~~dmik~~~ 65 (70) T 1msi_A 51 PLGTTLMPDMVKGYA 65 (70) T ss_dssp CTTCBCCGGGBTTCC T ss_pred CCCCCCCHHHHHHHH T ss_conf 896872899985032 No 6 >1s7i_A Hypothetical protein PA1349; structural genomics, protein structure initiative, MCSG, PSI, midwest center for structural genomics; 1.80A {Pseudomonas aeruginosa} SCOP: d.58.4.9 Probab=4.50 E-value=2.2e+02 Score=13.19 Aligned_cols=16 Identities=44% Similarity=0.750 Sum_probs=11.6 Q ss_pred CCEEEEEEEEEECCCC Q ss_conf 9455799997513588 Q gi|254780501|r 1 MKYFGLIYLNIAQKGS 16 (31) Q Consensus 1 mkyfgliylniaqkgs 16 (31) |||+-|||-+-..-.+ T Consensus 7 Mkyllli~~~~~~~~~ 22 (124) T 1s7i_A 7 MKYLCLIYFDEAKLAA 22 (124) T ss_dssp EEEEEEEEECGGGSSS T ss_pred CCEEEEEEECCCCCCC T ss_conf 7389999968112456 No 7 >3kde_C Transposable element P transposase; THAP domain, DNA-binding domain, zinc-finger, beta-alpha- beta, P-element transposase; HET: BRU; 1.74A {Drosophila melanogaster} Probab=4.31 E-value=1.5e+02 Score=13.95 Aligned_cols=14 Identities=36% Similarity=0.513 Sum_probs=9.8 Q ss_pred CCCEEEHHHHHCCC Q ss_conf 65112032540377 Q gi|254780501|r 17 TGSRILWEEIKNAS 30 (31) Q Consensus 17 tgsrilweeiknas 30 (31) .+-|-|||++-.-| T Consensus 23 ~~KRkLWe~sLgcs 36 (77) T 3kde_C 23 AIKRKLWEQSLGCS 36 (77) T ss_dssp HHHHHHHHHHHTSC T ss_pred HHHHHHHHHHHCCC T ss_conf 88899999861877 No 8 >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol- phosphate, lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A Probab=3.62 E-value=2.6e+02 Score=12.86 Aligned_cols=18 Identities=39% Similarity=0.748 Sum_probs=13.2 Q ss_pred EEEEEEEECCCCCCCEEEH Q ss_conf 7999975135886511203 Q gi|254780501|r 5 GLIYLNIAQKGSTGSRILW 23 (31) Q Consensus 5 gliylniaqkgstgsrilw 23 (31) |.||+ ++..|.||++... T Consensus 168 gfIY~-vs~~GvTG~~~~~ 185 (262) T 1rd5_A 168 GFVYL-VSVNGVTGPRANV 185 (262) T ss_dssp SCEEE-ECSSCCBCTTSCB T ss_pred CEEEE-ECCCCCCCCCCCC T ss_conf 62786-3034642212212 No 9 >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus HB8} SCOP: c.1.2.4 PDB: 1wxj_A* Probab=3.60 E-value=2.2e+02 Score=13.21 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=12.4 Q ss_pred EEEEEEEECCCCCCCEEEH Q ss_conf 7999975135886511203 Q gi|254780501|r 5 GLIYLNIAQKGSTGSRILW 23 (31) Q Consensus 5 gliylniaqkgstgsrilw 23 (31) |.||+ ++..|.||+|-.. T Consensus 169 gFiY~-vs~~GvTG~~~~~ 186 (271) T 1ujp_A 169 GFVYA-VSVTGVTGMRERL 186 (271) T ss_dssp SCEEE-ECC---------- T ss_pred CEEEE-EECCCCCCCCCCC T ss_conf 70788-4036777766555 No 10 >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, X-RAY analysis, stability, calorimetry lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A Probab=3.44 E-value=3.1e+02 Score=12.51 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=13.6 Q ss_pred EEEEEEEECCCCCCCEEEHH Q ss_conf 79999751358865112032 Q gi|254780501|r 5 GLIYLNIAQKGSTGSRILWE 24 (31) Q Consensus 5 gliylniaqkgstgsrilwe 24 (31) |.||+ +++.|-||+|-... T Consensus 158 gfiY~-vs~~GvTG~~~~~~ 176 (248) T 1geq_A 158 GFVYL-VSLYGTTGAREEIP 176 (248) T ss_dssp SEEEE-ECCC-------CCC T ss_pred CEEEE-ECCCCCCCCCCCCC T ss_conf 71798-41455578775432 Done!