HHsearch alignment for GI: 254780502 and conserved domain: COG1327
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription].
Probab=94.77 E-value=0.24 Score=28.84 Aligned_cols=75 Identities=19% Similarity=0.324 Sum_probs=50.1
Q ss_pred CEEEEECCCCEECCCHHHHHHHHHHHHCCCCCCCHHHH---HHHHHHHCC----CCCCHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 22898059976025989999999998516666899999---998973037----89888999999999999874418771
Q gi|254780502|r 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV---LSETYKNMY----DGLSESDLETALIFSSRTLIEKEPNY 216 (954)
Q Consensus 144 ~l~V~krDG~~e~~d~~ki~~~i~~ac~gL~~v~~~~i---~~~~~~~ly----dgitt~el~~~li~aA~~Li~~ePdy 216 (954)
T Consensus 48 ~~~VvKkdg~Re~F~r~Kl~~gl~~A~~KR-pVs~e~ie~~v~~ie~~Lr~~g~~EV~S~~IG~~VM~~Lk~l--D~VAY 124 (156)
T COG1327 48 PLIVVKKDGRREPFDREKLRRGLIRACEKR-PVSSEQIEEAVSHIERQLRSSGEREVPSKEIGELVMEELKKL--DEVAY 124 (156)
T ss_pred CCEEECCCCCCCCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC--CHHHH
T ss_conf 305887589708788899998999998159-999999999999999999866887678899999999999710--50232
Q ss_pred HHHHH
Q ss_conf 46779
Q gi|254780502|r 217 AKVTA 221 (954)
Q Consensus 217 ~~vAa 221 (954)
T Consensus 125 vRFAS 129 (156)
T COG1327 125 VRFAS 129 (156)
T ss_pred HHHHH
T ss_conf 34666