HHsearch alignment for GI: 254780502 and conserved domain: PRK00464
>PRK00464 nrdR transcriptional regulator NrdR; Validated.
Probab=96.23 E-value=0.036 Score=34.97 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=50.7
Q ss_pred CCEEEEECCCCEECCCHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHHC----CCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 42289805997602598999999999851666689999---999897303----78988899999999999987441877
Q gi|254780502|r 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI---VLSETYKNM----YDGLSESDLETALIFSSRTLIEKEPN 215 (954)
Q Consensus 143 ~~l~V~krDG~~e~~d~~ki~~~i~~ac~gL~~v~~~~---i~~~~~~~l----ydgitt~el~~~li~aA~~Li~~ePd 215 (954)
T Consensus 47 ~~l~VvKrdg~re~Fdr~Kl~~gi~~A~~KR-pv~~~~ie~~v~~Ie~~l~~~~~~EI~S~~IGe~Vm~~Lk~l--D~VA 123 (149)
T PRK00464 47 VPPLVIKKDGRREPFDREKLLRGLLRACEKR-PVSSEQIEAAVSRIERQLRASGEREVPSKEIGELVMEELKKL--DEVA 123 (149)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC--CCEE
T ss_conf 2657994599877777999999999996389-989999999999999999983888755999999999988620--9310
Q ss_pred HHHHHH
Q ss_conf 146779
Q gi|254780502|r 216 YAKVTA 221 (954)
Q Consensus 216 y~~vAa 221 (954)
T Consensus 124 YvRFAS 129 (149)
T PRK00464 124 YVRFAS 129 (149)
T ss_pred EHHHHH
T ss_conf 000245