HHsearch alignment for GI: 254780502 and conserved domain: PRK06406
>PRK06406 ribonucleotide-diphosphate reductase subunit alpha; Validated.
Probab=100.00 E-value=0 Score=1614.70 Aligned_cols=749 Identities=30% Similarity=0.475 Sum_probs=622.6
Q ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 64698028973224867999999999987048776432107999999999999999850667898521145489999998
Q gi|254780502|r 28 GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLM 107 (954)
Q Consensus 28 ~m~ViKRnG~vv~Fd~~KI~~AI~KAFlav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~VE~~LM 107 (954)
T Consensus 4 ~~~ViKRdG~~e~fd~~KI~~AI~kA~~~~~~~~~-------~~~~~l~~~V~~~l----~~~~~~~ve~IqD~Ve~~Lm 72 (770)
T PRK06406 4 IKEVVKRDGTVVPFEKEKITMAIYKAMLSVKNGSM-------EDAEKLADKVVDRL----KSDERPTVERIQDTVEDVLM 72 (770)
T ss_pred CCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHHC----CCCCCCCHHHHHHHHHHHHH
T ss_conf 66387889962675889999999999985359988-------77999999999850----46899989999999999998
Q ss_pred HCC-----CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 612-----089999988909999999987642100002344228980599760259899999999985166668999999
Q gi|254780502|r 108 QSG-----HHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182 (954)
Q Consensus 108 ~~g-----~~~VAkaYILYRe~Ra~~R~~~~~~~~~~~~~~~l~V~krDG~~e~~d~~ki~~~i~~ac~gL~~v~~~~i~ 182 (954)
T Consensus 73 ~~~~~~~~~~~vAk~yiLyRe~r~~~r~~~~~~~~~-----------~d~---~~------------------------- 113 (770)
T PRK06406 73 TSKINGKDFTDVAKSYILYREKRRAIREEKELIGVK-----------DDL---KL------------------------- 113 (770)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------CCH---HH-------------------------
T ss_conf 768766669999999999999999877776764344-----------420---21-------------------------
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98973037898889999999999998744187714677999999999986210033310110446777547888998665
Q gi|254780502|r 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 (954)
Q Consensus 183 ~~~~~~lydgitt~el~~~li~aA~~Li~~ePdy~~vAaRlll~~l~kev~~~~~~~~~~~~~~~~~~~y~~~f~~~i~~ 262 (954)
T Consensus 114 --------------~~~~~~~l~~ryl~~d~~~~~~e~~~~l~~rva~~~~~~-------------e~~~d--~~~~~~~ 164 (770)
T PRK06406 114 --------------TLNAVKVLEARYLLKDEDGKIIETPRQMFRRVASHIGII-------------EALYD--YRRYKKT 164 (770)
T ss_pred --------------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-------------HHHHH--HHHHHHH
T ss_conf --------------078999888755101788667886999999999876567-------------76666--8889886
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCCCEEECHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 57--6778777751773999997641210112898999999997621-14892753889999999965416454536899
Q gi|254780502|r 263 GV--KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 (954)
Q Consensus 263 G~--~~~~i~~~l~~~dl~~L~~~Id~~RD~~F~Y~Gl~tL~~rYll-k~~~~~~E~pQ~~~mrVA~~la~~e~~~~~~~ 339 (954)
T Consensus 165 ~~~~~~~~~~~~~~~~~--------------------~~-~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 220 (770)
T PRK06406 165 GKIPENAEVIGKVSRTQ--------------------EE-VLRRAFDYMKEDGILEGTFEEFMDFI---KTKGTSANEYI 220 (770)
T ss_pred HHHHHHHHHHHHCCHHH--------------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_conf 56455367764303426--------------------99-99999876401036666899999999---85135478899
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999997433035861122210022223211025476641358999989999985105444101244311120001278
Q gi|254780502|r 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 (954)
Q Consensus 340 ~~~Y~~ls~~~~~~atPtl~Nagt~~~qlsSCfl~~v~Dsl~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~G 419 (954)
T Consensus 221 ~~fy~~~s~~~f~~aTPtl~Nagt~~~qlsSCFl~~v~Dsl~~I~~~~~~~A~isK~GGGiG~~~s~lR~~Gs~I~gt~G 300 (770)
T PRK06406 221 NKFEEVMSSLDFVPNSPTLMNAGTKLGQLSACFVLPVGDSIEDIFETLKNTALIHKSGGGTGFSFSRLRPKDDIVGSTKG 300 (770)
T ss_pred HHHHHHHHCCCEECCCCCEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 99999997392115997302089988776415707888788999999999999960578244212345889880289898
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCHHHHHHCCCHHHCCCHHHHHHHHCCCCE
Q ss_conf 76428899999989999974046667724789835678899997302578730233202320203487999985212874
Q gi|254780502|r 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 (954)
Q Consensus 420 ~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~wH~Di~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~~~~w 499 (954)
T Consensus 301 ~ssG~vpfmkv~d~t~~~v~QgG~RrGA~~~yL~~~HpDI~eFl~~K~~---~~~~~~~~n~sv~i~D~Fm~~v~~d~~~ 377 (770)
T PRK06406 301 VASGPVSFMKIFDVTTDVIKQGGKRRGANMGILNYNHPDIMEFILSKDS---ENKVLSNFNISVGVTDEFFEKLDNDDYV 377 (770)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHCCCC---CCCCCCCCCCCEEECHHHHHHHHCCCCE
T ss_conf 0687001999999999999817998776589971785469999973488---6441003786100278999999769875
Q ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCEE
Q ss_conf 78710114441001344378998778752104886057786688999999999988288127833112022212466703
Q gi|254780502|r 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 (954)
Q Consensus 500 ~Lf~P~~~~~L~d~~g~~fe~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I 579 (954)
T Consensus 378 ~L~~p~~---------------------------~~~~k~i~AreLw~~Il~~~~etG~P~i~F~D~~N~~np~~~~G~I 430 (770)
T PRK06406 378 DLKNPRT---------------------------KKVVKRIKASEIWDAIIDQAWKTADPGLIFLDEINRKNPVKNVGDI 430 (770)
T ss_pred EEECCCC---------------------------CCEEEEEEHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCE
T ss_conf 7430677---------------------------6145566799999999999998789816754653111865566766
Q ss_pred EECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 40467520013665443321112554068625434-47988855899999999765311210001888886443310002
Q gi|254780502|r 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 (954)
Q Consensus 580 ~~sNlC~Ei~l~~~~~e~~vCnL~SiNL~~~v~~~-~~D~~~l~~~v~~avr~LDnVId~n~yp~~~~~~~~~~~R~iGl 658 (954)
T Consensus 431 ~~SNlC~E~~l~~~~~----CNLgSINL~~~v~~~~~~D~~~l~~~v~~avR~LDnVID~n~yP~~~~~~~n~~~R~IGL 506 (770)
T PRK06406 431 ESTNPCGEQPLLPYES----CNLGSINLSKYVVDGKDIDFDRLRETVWIATRFLDDVIDANKFPVEQIKKVTRMTRKIGL 506 (770)
T ss_pred EECCCCCCCCCCCCCC----CCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 7257876737899886----403510198885577657899999999999999887630543888999999886487367
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCC
Q ss_conf 11118899997296323378899999999998577999789875311778876678121387624466300552253345
Q gi|254780502|r 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 (954)
Q Consensus 659 Gv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~ 738 (954)
T Consensus 507 GvmGlad~L~~~gi~Y~S~ea~~~~~~i~e~I~~~A~~aS~eLAkErG~fp~f~gS~w~~-------------------- 566 (770)
T PRK06406 507 GVMGFADMLIKLEIPYNSWEALEIGEKVMSFINDESHKASQRLAEERGVFPAWYGSEWEK-------------------- 566 (770)
T ss_pred CCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH--------------------
T ss_conf 752089999975986089999999999999999999999999999868998877773345--------------------
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCC-CEEEECHHHHHHHHHCCCCC
Q ss_conf 40210272899999998412044301107743687783889884756012034532676-13664658999899858986
Q gi|254780502|r 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWD 817 (954)
Q Consensus 739 ~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G-~~~~vn~~l~~~l~~~g~~~ 817 (954)
T Consensus 567 ---------------~~~~~RNs~llaIAPTgSiS~i~G~S~gIEP~fa~~y~r~~~~G~~~~~vn~~l~~~l~~~g~~~ 631 (770)
T PRK06406 567 ---------------EGIKMRNSTTTTIAPTGTISIIAGCSSSIEPIFALAFVRHVLNGQELLEVNPLFEEKTRKLGLYS 631 (770)
T ss_pred ---------------CCCCEECCCEEEECCCCHHHHHCCCCCCCCCCHHHHHHEECCCCCEEEEECHHHHHHHHHCCCCC
T ss_conf ---------------15340214203468973077760787775713455642002578513664777899999818981
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEEC-CCCCHHHHHHHHHHHHHCC
Q ss_conf 899999985199627764488678865052220688999999985206300523204754-8999899999999999729
Q gi|254780502|r 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMG 896 (954)
Q Consensus 818 ~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~-~~~t~~~i~~~y~~Aw~~G 896 (954)
T Consensus 632 ~~~~~~i~~-~Gsv~~i~-lp~~~k~~f~TA~eI~~~~~V~~~A~~Qk~IDqaiSktln~p~~~t~~dv~~~Y~~Aw~~G 709 (770)
T PRK06406 632 EELMRKVAE-TGNLENID-INEEIKKIFVTAHEIDPQWHVLMQATFQRYCDSGVSKTINMPSDATREDIARAYRMAKDLH 709 (770)
T ss_pred HHHHHHHHH-CCCCCCCC-CCHHHHHHCCCHHHCCHHHHHHHHHHHCCCCHHHHCCCEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 999999974-79845688-9867897583297599899999998866762376618462489899999999999999958
Q ss_pred CCEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 8679796588411112101244443211123455555543234542236-888500
Q gi|254780502|r 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECE 951 (954)
Q Consensus 897 lKt~yy~R~~s~~~~ek~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~Ce 951 (954)
T Consensus 710 lKgit~yRdgSk~~qvl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~c~ 764 (770)
T PRK06406 710 CKGITVYRDKSKTVQVLTAGTDETKKKEEKEVIE-LVTKMPDKYLKIDSTFDPACP 764 (770)
T ss_pred CCEEEEEECCCCCHHHEECCCCCCHHHHHHHHHH-HHHHCCHHHHHCCCCCCCCCC
T ss_conf 9979999688757332202544300244442446-887433776400467799998