HHsearch alignment for GI: 254780502 and conserved domain: PRK07562
>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated.
Probab=100.00 E-value=0 Score=1059.02 Aligned_cols=567 Identities=25% Similarity=0.404 Sum_probs=480.5
Q ss_pred CHHHHHHHHHHHHHC--CC---CCCHHHHHHHHH----HHHHCCCCCCCCHHHHHHC-----------------------
Q ss_conf 889999999965416--45---453689999999----9974330358611222100-----------------------
Q gi|254780502|r 316 MPQAFFMRVAMGLAL--KE---TEKEKRAVEFYN----LLSSFHFMCSTPTLFNSGT----------------------- 363 (954)
Q Consensus 316 ~pQ~~~mrVA~~la~--~e---~~~~~~~~~~Y~----~ls~~~~~~atPtl~Nagt----------------------- 363 (954)
T Consensus 105 s~~q~~~r~~~~~~~wg~~~gyf~~~~da~~f~~e~~~~l~~q~~a~nsp~wfn~gl~~~ygi~g~~~g~~~~d~~~~~~ 184 (1177)
T PRK07562 105 SAKQVFDRLAGCWTYWGWKGGYFDSEEDARAFYDELRYMLATQMVAPNSPQWFNTGLHWAYGIDGPGQGHFYVDPKTGKL 184 (1177)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHCCCCCCCCCCEEECCCCCCE
T ss_conf 09999999999999887637830788899999999999999745278998327867401016667777733225655721
Q ss_pred -------CCCCCCCCCCCCCCCCH---HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf -------22223211025476641---35899998999998510544410124431112000127876428899999989
Q gi|254780502|r 364 -------RHPQLSSCFLTTVPDDL---YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 (954)
Q Consensus 364 -------~~~qlsSCfl~~v~Dsl---~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~ 433 (954)
T Consensus 185 ~~~~~~y~~pq~~acfi~sv~d~l~~~~~i~~~~~~ea~~fk~GsG~G~nfS~lR~~~e~lsg-GG~aSGPvSFMki~D~ 263 (1177)
T PRK07562 185 TKSKSAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGTNFSNLRGEGEKLSG-GGKSSGLMSFLKIGDR 263 (1177)
T ss_pred ECCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHH
T ss_conf 115762337776546788523334475409999998665431577367362113678885789-9866860789999898
Q ss_pred HHHHHHCCC-CCCCCEEEEEECCCCCHHHHHHHCCCC---------C----------------------C---HHHHH--
Q ss_conf 999974046-667724789835678899997302578---------7----------------------3---02332--
Q gi|254780502|r 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNT---------G----------------------D---DRRRT-- 476 (954)
Q Consensus 434 ~~~~v~QgG-~RrGA~~~~l~~wH~Di~eFl~~k~n~---------G----------------------~---~~~r~-- 476 (954)
T Consensus 264 aa~aIKsGG~tRRaAkM~iL~vDHPDIeeFI~~K~~EE~Kv~aLv~g~~~~~~~l~~i~~a~~~~~~~~~~~fDp~~n~~ 343 (1177)
T PRK07562 264 AAGAIKSGGTTRRAAKMVIVDIDHPDIEEFIDWKVKEEQKVASLVTGSKINSKHLKAIMKACVNCEGSGDDCFDPAKNPA 343 (1177)
T ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 77599737976664415774488864899987610211225766400077899999999987414433112357311667
Q ss_pred ---------------------------------------------------HCCCHHHCCCHHHHHHHHCCCCEEEEECC
Q ss_conf ---------------------------------------------------02320203487999985212874787101
Q gi|254780502|r 477 ---------------------------------------------------HDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 (954)
Q Consensus 477 ---------------------------------------------------~~~~~av~i~D~Fm~~v~~~~~w~Lf~P~ 505 (954)
T Consensus 344 l~~~i~~A~~~~vp~~~i~rv~~~~~qG~~~i~f~~yd~~~~~eay~tv~gqN~N~SV~vtD~FM~AVe~D~~~~L~~r~ 423 (1177)
T PRK07562 344 LKREIKAAKKALVPENYIKRVIQLARQGYTDIDFPTYDTDWDSEAYLTVSGQNSNNSVRVTDEFLRAVENDGDWNLTART 423 (1177)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECHHHHHHHHCCCCCEEEECC
T ss_conf 88999987750572777777777653155434543335666753124540102563386079999998659960358668
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCEEEECCCC
Q ss_conf 14441001344378998778752104886057786688999999999988288127833112022212466703404675
Q gi|254780502|r 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 (954)
Q Consensus 506 ~~~~L~d~~g~~fe~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~sNlC 585 (954)
T Consensus 424 ~---------------------------G~v~ktv~AreLw~kI~~aAW~~gDPGl~F~dtIN~wht~p~~G~I~aTNPC 476 (1177)
T PRK07562 424 D---------------------------GKVAKTLKARDLWEKIGYAAWASADPGLQFNTTINDWHTCPASGRIRASNPC 476 (1177)
T ss_pred C---------------------------CCEEEEEEHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECCCC
T ss_conf 9---------------------------8542586599999999999986289850651113254788877855533687
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 200136654433211125540686254--344798885589999999976531121000188888644331000211118
Q gi|254780502|r 586 TEITLNSSSEETAVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 (954)
Q Consensus 586 ~Ei~l~~~~~e~~vCnL~SiNL~~~v~--~~~~D~~~l~~~v~~avr~LDnVId~n~yp~~~~~~~~~~~R~iGlGv~Gl 663 (954)
T Consensus 477 sE~~lld~~a----CNLgSiNL~~fv~~~~g~fD~e~l~~avrl~t~~LDi~V~~a~fP~~eIa~~s~~~R~iGLG~~gl 552 (1177)
T PRK07562 477 SEYMFLDDTA----CNLASLNLLTFRDEETGRFDVEAYEHACRLWTVVLEISVLMAQFPSKEIAELSYEFRTLGLGYANI 552 (1177)
T ss_pred CCCCCCCCCC----CCCCEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCH
T ss_conf 6767788763----021313499760377880649999999999999998630122498099999874220347320469
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHC------------CCC-CHHHHHCCH
Q ss_conf 8999972963233788999999999985779997898753117788766781213------------876-244663005
Q gi|254780502|r 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ------------GVF-PIDSIGLLA 730 (954)
Q Consensus 664 ad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~------------G~~-~~d~~~~~~ 730 (954)
T Consensus 553 adlLm~lGipYDS~egrala~~i~a~mt~~Ay~~SaelA~e~G~Fp~y~~n~~~mlrViR~hr~aa~~~~~~ye~l~~~P 632 (1177)
T PRK07562 553 GGLLMTMGIPYDSPEGRAICGALSAIMTGVAYATSAEMAKELGPFPGYAKNADHMLRVIRNHRRAAHGESEGYEGLSVNP 632 (1177)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99999749987999999999999999999999999999997589865224189999998765544304654433234566
Q ss_pred HHCCCCCCC-----CHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC-CCCCCCCCHHEEEEECC-CCCEEEEC
Q ss_conf 522533454-----021027289999999841204430110774368778388-98847560120345326-76136646
Q gi|254780502|r 731 EVRDELAMN-----RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVN 803 (954)
Q Consensus 731 ~~~~~~~~~-----~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~-s~gIEP~~a~~y~r~~~-~G~~~~vn 803 (954)
T Consensus 633 ~~ld~~~~p~~~l~~~a~~~wd~al~~Gek~G~RNAq~TvIAPTGTIslimdcdSsGIEP~FALvk~kkl~gGg~~kivN 712 (1177)
T PRK07562 633 VPLDHANCPDADLVAHAKAAWDKALELGEKHGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIIN 712 (1177)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHEECCCCCEEEEEC
T ss_conf 44652338628899999988999998777633210036763477852566437877768640566410004784367632
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHC--C-----------------------------------------------------
Q ss_conf 589998998589868999999851--9-----------------------------------------------------
Q gi|254780502|r 804 SFLVNELKQRDLWDEAMISDLKYH--D----------------------------------------------------- 828 (954)
Q Consensus 804 ~~l~~~l~~~g~~~~~~~~~i~~~--~----------------------------------------------------- 828 (954)
T Consensus 713 ~~v~~aL~~LgY~~~~i~~i~~y~~g~gsl~~~p~i~~~~l~~~Gf~~~~i~~ve~~l~~~fdI~~~fn~w~lGe~f~~~ 792 (1177)
T PRK07562 713 RAVPEALRTLGYSESQIAEIEAYAVGHGTLNGAPGINHSTLKAKGFTDEKIEKVEAALPSAFDIKFAFNKWTLGEDFCKD 792 (1177)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHCCCHHHHH
T ss_conf 67799999759977999999999850674037864368999875987889999987403334310013300125145564
Q ss_pred -------------------------------------CCCCCCCCCCHHHHHHCCCHHC--------CCHHHHHHHHHHH
Q ss_conf -------------------------------------9627764488678865052220--------6889999999852
Q gi|254780502|r 829 -------------------------------------GSIGNIERIPDDLKKIHATAFE--------IDPMWLIESASRR 863 (954)
Q Consensus 829 -------------------------------------Gsv~~i~~ip~~~k~~f~ta~e--------i~~~~~i~~~a~~ 863 (954)
T Consensus 793 ~lg~~~e~l~d~~fd~L~~lG~s~~ei~aan~~v~G~mtiegaP~Lk~ehl~VFdcA~~cg~~G~R~is~e~Hv~MqAA~ 872 (1177)
T PRK07562 793 TLGITAEQLNDPGFDLLEALGFSKKDIEAANDHVCGAMTLEGAPHLKAEHLPVFDCANPCGKIGKRYLSVESHIRMMAAA 872 (1177)
T ss_pred HCCCCHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 21888888437556789870888889988765503666315776667888878865010133564234899999999997
Q ss_pred CCHHCCCEEEEEEC-CCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-HHHHHH
Q ss_conf 06300523204754-8999899999999999729867979658841-111210
Q gi|254780502|r 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKS 914 (954)
Q Consensus 864 Q~~IDqsiS~tl~~-~~~t~~~i~~~y~~Aw~~GlKt~yy~R~~s~-~~~ek~ 914 (954)
T Consensus 873 QpfidgAISKTINmP~~ATvEDv~~aY~~aw~lGlKgitvYRDGSKlsQpL~~ 925 (1177)
T PRK07562 873 QPFISGAISKTINMPNEATVEDCKNAYLLSWKLALKANALYRDGSKLSQPLNS 925 (1177)
T ss_pred HHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
T ss_conf 77606876215769898999999999999998387557875168744564542