HHsearch alignment for GI: 254780502 and conserved domain: TIGR02505

>TIGR02505 RTPR ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent; InterPro: IPR013345 This entry represents a group of adenosylcobalamin (AdoCbl or coenzymeB12)-dependent ribonucleotide reductases (RNR) related to the characterised species from Lactococcus leichmannii . RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. This model identifies NrdJ enzymes only in cyanobacteria, Lactococcus and certain bacteriophages. A separate model (IPR013344 from INTERPRO) identifies a larger group of divergent B12-dependent RNR's.; GO: 0000166 nucleotide binding, 0008998 ribonucleoside-triphosphate reductase activity, 0016960 class II ribonucleotide reductase activity, 0031419 cobalamin binding.
Probab=100.00  E-value=1.8e-33  Score=267.19  Aligned_cols=435  Identities=21%  Similarity=0.254  Sum_probs=285.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHH---HHC---CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---------------
Q ss_conf             47664135899998999998---510---544410124431112000127876428899999989---------------
Q gi|254780502|r  375 TVPDDLYGIFGALQENAMLA---KYS---GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND---------------  433 (954)
Q Consensus       375 ~v~Dsl~~I~~~~~~~a~is---k~g---gGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~---------------  433 (954)
T Consensus       209 ~~~Dsr~GWv~A~~~L~~~~f~~~~a~r~~~l~lDlS~vRp~G~~LkGFGG~AsGp~~L~~~~~~v~~iL~rCareGeqy  288 (827)
T TIGR02505       209 VVEDSREGWVKAVALLIDLHFDEQVADRKRKLVLDLSDVRPAGEKLKGFGGTASGPVPLAKMLTEVAEILSRCAREGEQY  288 (827)
T ss_pred             ECCCHHHHHHHHHHHHHHHCCHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             51711889999999998621531168870568886514241266101266445673889999999999840331003456


Q ss_pred             -------------------HHHHHHCCCCCCCCEEEEEECC----------------------CCCHHHHHHHCCCCCCH
Q ss_conf             -------------------9999740466677247898356----------------------78899997302578730
Q gi|254780502|r  434 -------------------TAVAVNQGGKRKGAVCAYLETW----------------------HIDVEEFLDLRKNTGDD  472 (954)
Q Consensus       434 -------------------~~~~v~QgG~RrGA~~~~l~~w----------------------H~Di~eFl~~k~n~G~~  472 (954)
T Consensus       289 r~~~g~~LT~~d~~~i~~~~a~~vvAGnvRRSA~~al~~~~dlaaaeakenlWqqdaeGnWrid~~~~~~~~~~~~~~~h  368 (827)
T TIGR02505       289 RKKSGGRLTSVDALDIVNLIAKIVVAGNVRRSAEMALFSADDLAAAEAKENLWQQDAEGNWRIDPEVEAFKIAKKKRVYH  368 (827)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf             66516501477899999887320234882355898730477777777766443104567733271279999887541121


Q ss_pred             HHHHHCCCHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHH
Q ss_conf             23320232020348799998521287478710114441001344-37899877875210488605778668899999999
Q gi|254780502|r  473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK-EFEIAYENYERQADRGEIKVFRKISAVALWRKMLT  551 (954)
Q Consensus       473 ~~r~~~~~~av~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~d~~g~-~fe~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~  551 (954)
T Consensus       369 ~-W~~~~~v~~--~~--r-----------------kqfhsGeGaiqf--a~~~l~~~~--~~~~~~~~~~~~~~~~~~~~  422 (827)
T TIGR02505       369 R-WASNNSVEV--DS--R-----------------KQFHSGEGAIQF--AFSALARSK--ADLLETEEVKQLRLDLALSE  422 (827)
T ss_pred             C-CCCCCEEHH--HH--H-----------------HHHCCCCCHHHH--HHHHHCCCC--CCCCCCCCHHHHHHHHCCCC
T ss_conf             1-236650010--10--1-----------------232046524453--245521367--88555420133432201688


Q ss_pred             HHHHHCCCEEEEECHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHHHH
Q ss_conf             998828812783311202221246670340467520013665443321112554068625434-4798885589999999
Q gi|254780502|r  552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVR  630 (954)
Q Consensus       552 ~~~etG~P~i~f~D~~N~~~p~~~~g~I~~sNlC~Ei~l~~~~~e~~vCnL~SiNL~~~v~~~-~~D~~~l~~~v~~avr  630 (954)
T Consensus       423 G~~~~G~~~~~~~~~~~~~~~~~rlG-~~G~NPCgEI~L~~~~p----CNL~ev~~~~~~~~~~ktdy~dl~~af~laar  497 (827)
T TIGR02505       423 GKIVNGEWLQTDSSLEDAGEAEERLG-VKGTNPCGEILLANKEP----CNLAEVNLLAFEEDKEKTDYVDLERAFKLAAR  497 (827)
T ss_pred             CCCCCCCCCCCCCCHHHCCCCCCCCC-EEECCCCEEEECCCCCC----CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             85103776543457545276755420-34258750455678897----54444337650267776462669999999999


Q ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC-----CCCC----CH--------HHHHHHHHHHHHHHHH
Q ss_conf             97653112100018888864433100021111889999729-----6323----37--------8899999999998577
Q gi|254780502|r  631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH-----IPYA----SP--------EAVEIADESMEFISFH  693 (954)
Q Consensus       631 ~LDnVId~n~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~g-----i~Y~----S~--------ea~~~~~~i~e~i~~~  693 (954)
T Consensus       498 ~~~R~t-~~~~~~e~~re~~~~nrriGvs~~G~~dfL~~~~GnrvvT~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  576 (827)
T TIGR02505       498 FVARLT-FSRLEDEISREVLAKNRRIGVSFTGVADFLVLAGGNRVVTAFKDDFENERVELTEVRAFDKREAKFLKRMKKI  576 (827)
T ss_pred             HHHHHH-HHHCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             998876-3110353678899718911542203899999735750664101104788744444677631489999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             99978987531177887667812138762446630055225334540210272899999998412044301107743687
Q gi|254780502|r  694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA  773 (954)
Q Consensus       694 a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S  773 (954)
T Consensus       577 v~~A~~~ys~~l~~--------------------------------------------------~~p~~~ttv~PsGT~s  606 (827)
T TIGR02505       577 VVKAAEDYSDELEL--------------------------------------------------PLPVKVTTVKPSGTIS  606 (827)
T ss_pred             HHHHHHHHHHHCCC--------------------------------------------------CCCCCCEECCCCCCCC
T ss_conf             87899999975278--------------------------------------------------8885520137777310


Q ss_pred             HHHC------CCCCCCCCCHHEEEEECCCCCEEEECH---HHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCH-----
Q ss_conf             7838------898847560120345326761366465---89998998589868999999851996277644886-----
Q gi|254780502|r  774 NICG------VSQSIDPSYQNLYVKSNMSGDFTVVNS---FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-----  839 (954)
Q Consensus       774 ~i~g------~s~gIEP~~a~~y~r~~~~G~~~~vn~---~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~-----  839 (954)
T Consensus       607 kl~GteeWGe~~eG~H~~~~~yli~rI~---F~~~Dpdqfl~~~~~~a~GY~v~~~~y~~~-~~~~lv~~P~kPrCs~~~  682 (827)
T TIGR02505       607 KLAGTEEWGEVSEGIHPPLGKYLIRRIR---FSKSDPDQFLLATALKAAGYTVEEDQYDKE-EQSVLVDIPVKPRCSETL  682 (827)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHCCC---CCCCCCHHHHHHHHHHHCCCEECCCCCCCC-CCEEEEECCCCCCCCCCC
T ss_conf             1478753367888723568888863043---331773478879999718986524643457-664787448888676434


Q ss_pred             ----------HHHHHCCCH-HCCCHHHHHHHHHHHC-CHHCCCEEEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf             ----------788650522-2068899999998520-6300523204754899989999999999972
Q gi|254780502|r  840 ----------DLKKIHATA-FEIDPMWLIESASRRQ-KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM  895 (954)
Q Consensus       840 ----------~~k~~f~ta-~ei~~~~~i~~~a~~Q-~~IDqsiS~tl~~~~~t~~~i~~~y~~Aw~~  895 (954)
T Consensus       683 Ve~~~~~~~~~~~~~~~~~iN~~S~~~ql~~y~~~Qt~w~~~~vS~Ti~~~~~e~~~v~~~l~~~~D~  750 (827)
T TIGR02505       683 VEFPAEVVGADNPDIEEVEINTLSALAQLAFYALLQTTWADNAVSATIELDPDEVEAVEEALRQARDN  750 (827)
T ss_pred             CCHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHCCCC
T ss_conf             55023432136776011212268999999999999998762031344664622014799999850011