HHsearch alignment for GI: 254780502 and conserved domain: TIGR02505
>TIGR02505 RTPR ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent; InterPro: IPR013345 This entry represents a group of adenosylcobalamin (AdoCbl or coenzymeB12)-dependent ribonucleotide reductases (RNR) related to the characterised species from Lactococcus leichmannii . RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. This model identifies NrdJ enzymes only in cyanobacteria, Lactococcus and certain bacteriophages. A separate model (IPR013344 from INTERPRO) identifies a larger group of divergent B12-dependent RNR's.; GO: 0000166 nucleotide binding, 0008998 ribonucleoside-triphosphate reductase activity, 0016960 class II ribonucleotide reductase activity, 0031419 cobalamin binding.
Probab=100.00 E-value=1.8e-33 Score=267.19 Aligned_cols=435 Identities=21% Similarity=0.254 Sum_probs=285.2
Q ss_pred CCCCCHHHHHHHHHHHHHHH---HHC---CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---------------
Q ss_conf 47664135899998999998---510---544410124431112000127876428899999989---------------
Q gi|254780502|r 375 TVPDDLYGIFGALQENAMLA---KYS---GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND--------------- 433 (954)
Q Consensus 375 ~v~Dsl~~I~~~~~~~a~is---k~g---gGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~--------------- 433 (954)
T Consensus 209 ~~~Dsr~GWv~A~~~L~~~~f~~~~a~r~~~l~lDlS~vRp~G~~LkGFGG~AsGp~~L~~~~~~v~~iL~rCareGeqy 288 (827)
T TIGR02505 209 VVEDSREGWVKAVALLIDLHFDEQVADRKRKLVLDLSDVRPAGEKLKGFGGTASGPVPLAKMLTEVAEILSRCAREGEQY 288 (827)
T ss_pred ECCCHHHHHHHHHHHHHHHCCHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 51711889999999998621531168870568886514241266101266445673889999999999840331003456
Q ss_pred -------------------HHHHHHCCCCCCCCEEEEEECC----------------------CCCHHHHHHHCCCCCCH
Q ss_conf -------------------9999740466677247898356----------------------78899997302578730
Q gi|254780502|r 434 -------------------TAVAVNQGGKRKGAVCAYLETW----------------------HIDVEEFLDLRKNTGDD 472 (954)
Q Consensus 434 -------------------~~~~v~QgG~RrGA~~~~l~~w----------------------H~Di~eFl~~k~n~G~~ 472 (954)
T Consensus 289 r~~~g~~LT~~d~~~i~~~~a~~vvAGnvRRSA~~al~~~~dlaaaeakenlWqqdaeGnWrid~~~~~~~~~~~~~~~h 368 (827)
T TIGR02505 289 RKKSGGRLTSVDALDIVNLIAKIVVAGNVRRSAEMALFSADDLAAAEAKENLWQQDAEGNWRIDPEVEAFKIAKKKRVYH 368 (827)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 66516501477899999887320234882355898730477777777766443104567733271279999887541121
Q ss_pred HHHHHCCCHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHH
Q ss_conf 23320232020348799998521287478710114441001344-37899877875210488605778668899999999
Q gi|254780502|r 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK-EFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 (954)
Q Consensus 473 ~~r~~~~~~av~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~d~~g~-~fe~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~ 551 (954)
T Consensus 369 ~-W~~~~~v~~--~~--r-----------------kqfhsGeGaiqf--a~~~l~~~~--~~~~~~~~~~~~~~~~~~~~ 422 (827)
T TIGR02505 369 R-WASNNSVEV--DS--R-----------------KQFHSGEGAIQF--AFSALARSK--ADLLETEEVKQLRLDLALSE 422 (827)
T ss_pred C-CCCCCEEHH--HH--H-----------------HHHCCCCCHHHH--HHHHHCCCC--CCCCCCCCHHHHHHHHCCCC
T ss_conf 1-236650010--10--1-----------------232046524453--245521367--88555420133432201688
Q ss_pred HHHHHCCCEEEEECHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHHHH
Q ss_conf 998828812783311202221246670340467520013665443321112554068625434-4798885589999999
Q gi|254780502|r 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVR 630 (954)
Q Consensus 552 ~~~etG~P~i~f~D~~N~~~p~~~~g~I~~sNlC~Ei~l~~~~~e~~vCnL~SiNL~~~v~~~-~~D~~~l~~~v~~avr 630 (954)
T Consensus 423 G~~~~G~~~~~~~~~~~~~~~~~rlG-~~G~NPCgEI~L~~~~p----CNL~ev~~~~~~~~~~ktdy~dl~~af~laar 497 (827)
T TIGR02505 423 GKIVNGEWLQTDSSLEDAGEAEERLG-VKGTNPCGEILLANKEP----CNLAEVNLLAFEEDKEKTDYVDLERAFKLAAR 497 (827)
T ss_pred CCCCCCCCCCCCCCHHHCCCCCCCCC-EEECCCCEEEECCCCCC----CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 85103776543457545276755420-34258750455678897----54444337650267776462669999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC-----CCCC----CH--------HHHHHHHHHHHHHHHH
Q ss_conf 97653112100018888864433100021111889999729-----6323----37--------8899999999998577
Q gi|254780502|r 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH-----IPYA----SP--------EAVEIADESMEFISFH 693 (954)
Q Consensus 631 ~LDnVId~n~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~g-----i~Y~----S~--------ea~~~~~~i~e~i~~~ 693 (954)
T Consensus 498 ~~~R~t-~~~~~~e~~re~~~~nrriGvs~~G~~dfL~~~~GnrvvT~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 576 (827)
T TIGR02505 498 FVARLT-FSRLEDEISREVLAKNRRIGVSFTGVADFLVLAGGNRVVTAFKDDFENERVELTEVRAFDKREAKFLKRMKKI 576 (827)
T ss_pred HHHHHH-HHHCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 998876-3110353678899718911542203899999735750664101104788744444677631489999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 99978987531177887667812138762446630055225334540210272899999998412044301107743687
Q gi|254780502|r 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 (954)
Q Consensus 694 a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S 773 (954)
T Consensus 577 v~~A~~~ys~~l~~--------------------------------------------------~~p~~~ttv~PsGT~s 606 (827)
T TIGR02505 577 VVKAAEDYSDELEL--------------------------------------------------PLPVKVTTVKPSGTIS 606 (827)
T ss_pred HHHHHHHHHHHCCC--------------------------------------------------CCCCCCEECCCCCCCC
T ss_conf 87899999975278--------------------------------------------------8885520137777310
Q ss_pred HHHC------CCCCCCCCCHHEEEEECCCCCEEEECH---HHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCH-----
Q ss_conf 7838------898847560120345326761366465---89998998589868999999851996277644886-----
Q gi|254780502|r 774 NICG------VSQSIDPSYQNLYVKSNMSGDFTVVNS---FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD----- 839 (954)
Q Consensus 774 ~i~g------~s~gIEP~~a~~y~r~~~~G~~~~vn~---~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~----- 839 (954)
T Consensus 607 kl~GteeWGe~~eG~H~~~~~yli~rI~---F~~~Dpdqfl~~~~~~a~GY~v~~~~y~~~-~~~~lv~~P~kPrCs~~~ 682 (827)
T TIGR02505 607 KLAGTEEWGEVSEGIHPPLGKYLIRRIR---FSKSDPDQFLLATALKAAGYTVEEDQYDKE-EQSVLVDIPVKPRCSETL 682 (827)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCC---CCCCCCHHHHHHHHHHHCCCEECCCCCCCC-CCEEEEECCCCCCCCCCC
T ss_conf 1478753367888723568888863043---331773478879999718986524643457-664787448888676434
Q ss_pred ----------HHHHHCCCH-HCCCHHHHHHHHHHHC-CHHCCCEEEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf ----------788650522-2068899999998520-6300523204754899989999999999972
Q gi|254780502|r 840 ----------DLKKIHATA-FEIDPMWLIESASRRQ-KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895 (954)
Q Consensus 840 ----------~~k~~f~ta-~ei~~~~~i~~~a~~Q-~~IDqsiS~tl~~~~~t~~~i~~~y~~Aw~~ 895 (954)
T Consensus 683 Ve~~~~~~~~~~~~~~~~~iN~~S~~~ql~~y~~~Qt~w~~~~vS~Ti~~~~~e~~~v~~~l~~~~D~ 750 (827)
T TIGR02505 683 VEFPAEVVGADNPDIEEVEINTLSALAQLAFYALLQTTWADNAVSATIELDPDEVEAVEEALRQARDN 750 (827)
T ss_pred CCHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHCCCC
T ss_conf 55023432136776011212268999999999999998762031344664622014799999850011